Citrus Sinensis ID: 011452
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| 224127814 | 474 | predicted protein [Populus trichocarpa] | 0.973 | 0.995 | 0.908 | 0.0 | |
| 297736651 | 464 | unnamed protein product [Vitis vinifera] | 0.952 | 0.995 | 0.905 | 0.0 | |
| 225448335 | 482 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.983 | 0.904 | 0.0 | |
| 147825153 | 481 | hypothetical protein VITISV_027347 [Viti | 0.977 | 0.985 | 0.904 | 0.0 | |
| 356516198 | 478 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.991 | 0.883 | 0.0 | |
| 356509116 | 480 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.993 | 0.885 | 0.0 | |
| 357464341 | 484 | hypothetical protein MTR_3g093520 [Medic | 0.989 | 0.991 | 0.892 | 0.0 | |
| 217071708 | 484 | unknown [Medicago truncatula] | 0.989 | 0.991 | 0.890 | 0.0 | |
| 356553007 | 479 | PREDICTED: uncharacterized protein LOC10 | 0.981 | 0.993 | 0.885 | 0.0 | |
| 359486434 | 484 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.979 | 0.892 | 0.0 |
| >gi|224127814|ref|XP_002329184.1| predicted protein [Populus trichocarpa] gi|222870965|gb|EEF08096.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 901 bits (2329), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/481 (90%), Positives = 455/481 (94%), Gaps = 9/481 (1%)
Query: 5 GGGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQ 64
GGGGRRI+ SPRPC+G+RV+AKKR R++ G DGFVNSVKKLQRREI SKRDR+FTMTDAQ
Sbjct: 3 GGGGRRITVSPRPCNGKRVVAKKRGRSFGGGDGFVNSVKKLQRREICSKRDRSFTMTDAQ 62
Query: 65 ERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRET 124
ERFRNIRLQEEYDT+DPKGHC+MVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RET
Sbjct: 63 ERFRNIRLQEEYDTYDPKGHCTMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRET 122
Query: 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184
NQRICFLNVT DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CRSTRIEYIRRG+PDAGF
Sbjct: 123 NQRICFLNVTPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYIRRGQPDAGF 182
Query: 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPG 244
ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI+DKNVQEIKISPG
Sbjct: 183 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIADKNVQEIKISPG 242
Query: 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304
IMLLI TK+SG VPL+ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI
Sbjct: 243 IMLLILTKSSGCVPLEILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 302
Query: 305 LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 364
LDVRNF+LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP
Sbjct: 303 LDVRNFDLTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHP 362
Query: 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424
DCNTNNIYITSDQDLIISYCKADSDDPL+EGNAGSINISNILTGKCLAKI+ASN P EN
Sbjct: 363 DCNTNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNSFPNEN 422
Query: 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484
EC N KKH HASRIRST AEALEDITALFYDE+RNEIYTGNRHGLVHVWS
Sbjct: 423 EC---------GQNSKKHRHASRIRSTAAEALEDITALFYDEERNEIYTGNRHGLVHVWS 473
Query: 485 N 485
N
Sbjct: 474 N 474
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736651|emb|CBI25522.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2295), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/478 (90%), Positives = 449/478 (93%), Gaps = 16/478 (3%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 58
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 59 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 118
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 119 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 178
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 179 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 238
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 239 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 298
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 299 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 358
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427
TNNIYITSDQDLIISYCKADSDDPL+EGNAGSINISNILTGKCLAKI+ASN P ENECS
Sbjct: 359 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECS 418
Query: 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485
C+ H+ ASRIRSTVAEALEDITALFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 419 CT------------HASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 464
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225448335|ref|XP_002266566.1| PREDICTED: uncharacterized protein LOC100263968 isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/483 (90%), Positives = 457/483 (94%), Gaps = 9/483 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 59
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 60 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 119
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 120 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 179
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 180 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 239
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 240 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 299
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 300 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 359
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427
TNNIYITSDQDLIISYCKADSDDPL+EGNAGSINISNILTGKCLAKI+ASN P ENECS
Sbjct: 360 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECS 419
Query: 428 CSGDYSSGSCNV-----KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482
CS ++SS S ++ + H+ ASRIRSTVAEALEDITALFYDE+RNEIYTGNRHGLVHV
Sbjct: 420 CSSNFSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHV 479
Query: 483 WSN 485
WSN
Sbjct: 480 WSN 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147825153|emb|CAN75497.1| hypothetical protein VITISV_027347 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2265), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/483 (90%), Positives = 457/483 (94%), Gaps = 9/483 (1%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 3 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 58
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 59 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 118
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 119 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 178
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 179 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 238
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 239 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 298
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 299 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 358
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427
TNNIYITSDQDLIISYCKADSDDPL+EGNAGSINISNILTGKCLAKI+ASN P ENECS
Sbjct: 359 TNNIYITSDQDLIISYCKADSDDPLSEGNAGSINISNILTGKCLAKIKASNNFPMENECS 418
Query: 428 CSGDYSSGSCNV-----KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482
CS ++SS S ++ + H+ ASRIRSTVAEALEDITALFYDE+RNEIYTGNRHGLVHV
Sbjct: 419 CSSNFSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHV 478
Query: 483 WSN 485
WSN
Sbjct: 479 WSN 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516198|ref|XP_003526783.1| PREDICTED: uncharacterized protein LOC100814724 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/481 (88%), Positives = 445/481 (92%), Gaps = 7/481 (1%)
Query: 7 GGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQER 66
GG+RI+ SPRPC GRR++A K+R DGFVNSVKKLQRREISSKRDRAFTM+DAQER
Sbjct: 3 GGKRITVSPRPCCGRRIVAAKKRPR--ANDGFVNSVKKLQRREISSKRDRAFTMSDAQER 60
Query: 67 FRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ 126
FRNIRLQEEYDTHDPKG SMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQ
Sbjct: 61 FRNIRLQEEYDTHDPKGPSSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQ 120
Query: 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186
RICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRG PDAGFAL
Sbjct: 121 RICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGTPDAGFAL 180
Query: 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 246
FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM
Sbjct: 181 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 240
Query: 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306
LLI+ KAS HVPLKILSIEDGT+LKSF+HLL+RNKKVDFIEQFNEKLLVKQENENLQILD
Sbjct: 241 LLIYAKASSHVPLKILSIEDGTILKSFSHLLYRNKKVDFIEQFNEKLLVKQENENLQILD 300
Query: 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC 366
VR FE TEV R+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC
Sbjct: 301 VRTFEHTEVCRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC 360
Query: 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426
NTNNIYITSDQDLIISYCKADSDD L+EGNAGSIN+SNILTGKCLAKIRASN P +N C
Sbjct: 361 NTNNIYITSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNSC 420
Query: 427 SCSGDYSSGS--CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484
S D SGS CN KK H S+ RSTVAEALEDITALFYDE+RNEIYTGNRHGLVHVWS
Sbjct: 421 S---DNPSGSCCCNSKKRKHGSKTRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWS 477
Query: 485 N 485
N
Sbjct: 478 N 478
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509116|ref|XP_003523298.1| PREDICTED: uncharacterized protein LOC100819305 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2242), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/480 (88%), Positives = 444/480 (92%), Gaps = 3/480 (0%)
Query: 7 GGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQER 66
GGRRI+ SPRPC GRR++A K+R DGFVNSVKKLQRREISSKRDRAFTM+DAQER
Sbjct: 3 GGRRITVSPRPCCGRRIVAAKKRPR--ANDGFVNSVKKLQRREISSKRDRAFTMSDAQER 60
Query: 67 FRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ 126
FRNIRLQEEYDTHDPKG SMVL FLRKRSKIIEIVAARDIVFALAQSGVCAAF RE NQ
Sbjct: 61 FRNIRLQEEYDTHDPKGPSSMVLQFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRENNQ 120
Query: 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186
RICFLNV+ADEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRG PDAGFAL
Sbjct: 121 RICFLNVSADEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGTPDAGFAL 180
Query: 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 246
FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM
Sbjct: 181 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 240
Query: 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306
LLI+ KAS HVPLKILSIEDGTVLKSF+HLL+RNKKVDFIEQFNEKLLVKQENENLQILD
Sbjct: 241 LLIYAKASSHVPLKILSIEDGTVLKSFSHLLYRNKKVDFIEQFNEKLLVKQENENLQILD 300
Query: 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC 366
VR FE TEV R+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC
Sbjct: 301 VRTFEHTEVCRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDC 360
Query: 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426
NTNNIYITSDQDLIISYCKADSDD L+EGNAGSIN+SNILTGKCLAKIRASN P +N C
Sbjct: 361 NTNNIYITSDQDLIISYCKADSDDSLSEGNAGSINVSNILTGKCLAKIRASNSFPVDNNC 420
Query: 427 SCSGDYS-SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485
SCS S S CN KK H S++RSTVAEALEDITALFYDE+RNEIYTGNR GLVHVWSN
Sbjct: 421 SCSDKPSRSYCCNSKKRKHGSKMRSTVAEALEDITALFYDEERNEIYTGNRLGLVHVWSN 480
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464341|ref|XP_003602452.1| hypothetical protein MTR_3g093520 [Medicago truncatula] gi|355491500|gb|AES72703.1| hypothetical protein MTR_3g093520 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/482 (89%), Positives = 448/482 (92%), Gaps = 2/482 (0%)
Query: 6 GGGRRISASPRPCSGRRVL--AKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDA 63
G GRRI+ SPRPC GRRV AKK R DGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3 GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62
Query: 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRE 123
QERFRNIRLQEEYDTHDPKG S+VLPFLRKRSKIIEIVAA+DIVFALAQSGVCAAF RE
Sbjct: 63 QERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRE 122
Query: 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183
TNQRICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRGKPDAG
Sbjct: 123 TNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAG 182
Query: 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243
FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP
Sbjct: 183 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 242
Query: 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303
GIMLLIF KAS HVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENENLQ
Sbjct: 243 GIMLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQ 302
Query: 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 363
ILDVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH
Sbjct: 303 ILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 362
Query: 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAE 423
PDCNTNNIYITSDQDLIISYCKADSDD L EGNAGSIN+SNIL+GKCLAKIRASN P +
Sbjct: 363 PDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKCLAKIRASNSSPMD 422
Query: 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483
++CSC S GSCN +K H S++RSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW
Sbjct: 423 DKCSCCDSSSGGSCNSRKRKHVSKMRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 482
Query: 484 SN 485
SN
Sbjct: 483 SN 484
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|217071708|gb|ACJ84214.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/482 (89%), Positives = 448/482 (92%), Gaps = 2/482 (0%)
Query: 6 GGGRRISASPRPCSGRRVL--AKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDA 63
G GRRI+ SPRPC GRRV AKK R DGFVNSVKKLQRREISSKRDRAF+MTDA
Sbjct: 3 GTGRRITVSPRPCCGRRVRVDAKKTGRGGRTVDGFVNSVKKLQRREISSKRDRAFSMTDA 62
Query: 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRE 123
QERFRNIRLQEEYDTHDPKG S+VLPFLRKRSKIIEIVAA+DIVFALAQSGVCAAF RE
Sbjct: 63 QERFRNIRLQEEYDTHDPKGPSSVVLPFLRKRSKIIEIVAAQDIVFALAQSGVCAAFSRE 122
Query: 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183
TNQRICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRRGKPDAG
Sbjct: 123 TNQRICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRGKPDAG 182
Query: 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243
FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP
Sbjct: 183 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 242
Query: 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303
GI+LLIF KAS HVPLKILSIEDGTVLKSFNHLL+RNKKVDFIEQFNEKLLVKQENENLQ
Sbjct: 243 GIVLLIFAKASSHVPLKILSIEDGTVLKSFNHLLYRNKKVDFIEQFNEKLLVKQENENLQ 302
Query: 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 363
ILDVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH
Sbjct: 303 ILDVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWH 362
Query: 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAE 423
PDCNTNNIYITSDQDLIISYCKADSDD L EGNAGSIN+SNIL+GKCLAKIRASN P +
Sbjct: 363 PDCNTNNIYITSDQDLIISYCKADSDDSLTEGNAGSINVSNILSGKCLAKIRASNSSPMD 422
Query: 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483
++CSC S GSCN +K H S++RSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW
Sbjct: 423 DKCSCCDSSSGGSCNSRKRKHVSKMRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 482
Query: 484 SN 485
SN
Sbjct: 483 SN 484
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356553007|ref|XP_003544850.1| PREDICTED: uncharacterized protein LOC100819178 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2225), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/481 (88%), Positives = 445/481 (92%), Gaps = 5/481 (1%)
Query: 6 GGGRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQE 65
GGGRRI+ SPRPC GRRV+AKKR R DGFVNSVKKLQRREISS RDRAF+MTDAQE
Sbjct: 3 GGGRRITVSPRPCCGRRVVAKKRPR---LVDGFVNSVKKLQRREISSNRDRAFSMTDAQE 59
Query: 66 RFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETN 125
RFRNIRLQEEYDTHDPKG S+VL FLRKRSKIIEIVAARDIVFALAQSGVCAAF RETN
Sbjct: 60 RFRNIRLQEEYDTHDPKGPSSVVLSFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETN 119
Query: 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185
+RICFLNV+ DEVIRSLFYNKNNDSLITVSVYASD++SSL+CRSTRIEYIRR KPDAGFA
Sbjct: 120 ERICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDSYSSLKCRSTRIEYIRRVKPDAGFA 179
Query: 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 245
LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY+MLYSISDKNVQEIKISPGI
Sbjct: 180 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYSMLYSISDKNVQEIKISPGI 239
Query: 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305
MLLIF K+S HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL
Sbjct: 240 MLLIFAKSSSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 299
Query: 306 DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPD 365
DVR FELTEVSR+EFMTPSAFIFLYENQLFLTFRN+TVAVWNFRGELVTSFEDHLLWHPD
Sbjct: 300 DVRTFELTEVSRSEFMTPSAFIFLYENQLFLTFRNQTVAVWNFRGELVTSFEDHLLWHPD 359
Query: 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425
CNTNNIYITSDQDLIISYCKADSDD L+EGN GSIN+SNILTGKCLAKIRASNG P E
Sbjct: 360 CNTNNIYITSDQDLIISYCKADSDDSLSEGN-GSINVSNILTGKCLAKIRASNGFPMVKE 418
Query: 426 -CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484
+ SS +CN K H+SRIRSTVAEALEDITALFYDE+RNEIYTGNRHGLVHVWS
Sbjct: 419 CSCSDDNCSSSACNSGKQKHSSRIRSTVAEALEDITALFYDEERNEIYTGNRHGLVHVWS 478
Query: 485 N 485
N
Sbjct: 479 N 479
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486434|ref|XP_002266694.2| PREDICTED: uncharacterized protein LOC100263968 isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 861 bits (2224), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/485 (89%), Positives = 452/485 (93%), Gaps = 11/485 (2%)
Query: 8 GRRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
G+RIS SPRP SGRRV+AKKR RN DGFVNSVKKLQRREI SKRDR+F+M+DAQERF
Sbjct: 4 GKRISVSPRPGSGRRVVAKKRPRN----DGFVNSVKKLQRREICSKRDRSFSMSDAQERF 59
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RNIRLQEEYDTHDPKGHC++VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAF RETNQR
Sbjct: 60 RNIRLQEEYDTHDPKGHCTLVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFSRETNQR 119
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
ICFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CR+TRIEYIRRGKPDAGFALF
Sbjct: 120 ICFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRTTRIEYIRRGKPDAGFALF 179
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK+VQEIKISPGIML
Sbjct: 180 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKHVQEIKISPGIML 239
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIFTKAS HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 240 LIFTKASSHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 299
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN
Sbjct: 300 RNSELKEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 359
Query: 368 TNNIYITSDQDLIISYCKADSDDPLA--EGNAGSINISNILTGKCLAKIRASNGLPAENE 425
TNNIYITSDQDLIISYCKADSDDP AGSINISNILTGKCLAKI+ASN P ENE
Sbjct: 360 TNNIYITSDQDLIISYCKADSDDPFVCIPLAAGSINISNILTGKCLAKIKASNNFPMENE 419
Query: 426 CSCSGDYSSGSCNV-----KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480
CSCS ++SS S ++ + H+ ASRIRSTVAEALEDITALFYDE+RNEIYTGNRHGLV
Sbjct: 420 CSCSSNFSSSSSSIGGSRKRAHASASRIRSTVAEALEDITALFYDEERNEIYTGNRHGLV 479
Query: 481 HVWSN 485
HVWSN
Sbjct: 480 HVWSN 484
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 485 | ||||||
| TAIR|locus:2080305 | 467 | AT3G54190 "AT3G54190" [Arabido | 0.956 | 0.993 | 0.834 | 1.7e-210 | |
| TAIR|locus:2064201 | 467 | AT2G38630 "AT2G38630" [Arabido | 0.952 | 0.989 | 0.811 | 3e-204 |
| TAIR|locus:2080305 AT3G54190 "AT3G54190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2035 (721.4 bits), Expect = 1.7e-210, P = 1.7e-210
Identities = 398/477 (83%), Positives = 428/477 (89%)
Query: 9 RRISASPRPCSGRRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFR 68
RRI+ASPRPCSGRR++AKKR R DGFVNSVKKLQRREISS++DRAF+++ AQERFR
Sbjct: 4 RRITASPRPCSGRRIVAKKRSRP----DGFVNSVKKLQRREISSRKDRAFSISTAQERFR 59
Query: 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRI 128
N+RL E+YDTHDPKGHC + LPFL KR+K+IEIVAARDIVFALA SGVCAAF RE+N+RI
Sbjct: 60 NMRLVEQYDTHDPKGHCLVALPFLMKRTKVIEIVAARDIVFALAHSGVCAAFSRESNKRI 119
Query: 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188
CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDNFSSL+CRSTRIEYI RG+PDAGFALFE
Sbjct: 120 CFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNFSSLKCRSTRIEYILRGQPDAGFALFE 179
Query: 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248
SESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNYTMLYSISDKNVQEIKISPGIMLL
Sbjct: 180 SESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 239
Query: 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308
IF +A+ HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR
Sbjct: 240 IFKRAASHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 299
Query: 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNT 368
N EL EVSR EFMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCNT
Sbjct: 300 NAELMEVSRAEFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCNT 359
Query: 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEXXX 428
NNIYITSDQDLIISYCKAD++D EGNAGSINISNILTGKCLAKI S+G P ++E
Sbjct: 360 NNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKITPSSGPPKDDESSS 419
Query: 429 XXXXXXXXXNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485
N + R R+ VAEALEDITALFYDE+RNEIYTGNRHGLVHVWSN
Sbjct: 420 S--------NCMGKNSKQR-RNAVAEALEDITALFYDEERNEIYTGNRHGLVHVWSN 467
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| TAIR|locus:2064201 AT2G38630 "AT2G38630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1976 (700.6 bits), Expect = 3.0e-204, P = 3.0e-204
Identities = 388/478 (81%), Positives = 424/478 (88%)
Query: 9 RRISASPRPCSG-RRVLAKKRRRNWAGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERF 67
RRI A+PRPCSG RRV+AKKR R DGFVNSVKKLQRREISS+ DRAF+++ AQERF
Sbjct: 5 RRIIANPRPCSGSRRVIAKKRSRP----DGFVNSVKKLQRREISSRMDRAFSISTAQERF 60
Query: 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR 127
RN+RL E+YDTHDPKG+C + LP L KRSK+IEIVAARDIVFAL SGVCA+F RETN++
Sbjct: 61 RNMRLVEQYDTHDPKGYCLVSLPNLLKRSKVIEIVAARDIVFALTLSGVCASFSRETNKK 120
Query: 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187
+CFLNV+ DEVIRSLFYNKNNDSLITVSVYASDN+SSL+CRSTRIEYI RG+ DAGF LF
Sbjct: 121 VCFLNVSPDEVIRSLFYNKNNDSLITVSVYASDNYSSLKCRSTRIEYILRGQADAGFPLF 180
Query: 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247
ESESLKWPGFVEFDDVNGKVLTYSAQDS+YKVFDLKNY +LYSISDKNVQEIKISPGIML
Sbjct: 181 ESESLKWPGFVEFDDVNGKVLTYSAQDSVYKVFDLKNYALLYSISDKNVQEIKISPGIML 240
Query: 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307
LIF +A+ HVPLKILSIEDGT+LKSF+HLLHRNKKVDFIEQFNEKLLVKQENENLQILDV
Sbjct: 241 LIFKRAASHVPLKILSIEDGTLLKSFHHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 300
Query: 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCN 367
RN EL EVSRT+FMTPSAFIFLYENQLFLTFRNR V+VWNFRGELVTSFEDHLLWHPDCN
Sbjct: 301 RNAELIEVSRTDFMTPSAFIFLYENQLFLTFRNRNVSVWNFRGELVTSFEDHLLWHPDCN 360
Query: 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEXX 427
TNNIYITSDQDLIISYCKAD++D EGNAGSINISNILTGKCLAKI+A+NG P E +
Sbjct: 361 TNNIYITSDQDLIISYCKADTEDQWIEGNAGSINISNILTGKCLAKIKANNGPPKEEDCS 420
Query: 428 XXXXXXXXXXNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485
++SR RS VAEALEDITALFYDE+RNEIYTGNRHGL+HVWSN
Sbjct: 421 SSDL-----------GNSSRRRSAVAEALEDITALFYDEERNEIYTGNRHGLLHVWSN 467
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.135 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 485 467 0.00098 118 3 11 22 0.36 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 618 (66 KB)
Total size of DFA: 280 KB (2147 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.94u 0.11s 39.05t Elapsed: 00:00:02
Total cpu time: 38.94u 0.11s 39.05t Elapsed: 00:00:02
Start: Fri May 10 12:44:42 2013 End: Fri May 10 12:44:44 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_scaffold_125000012 | hypothetical protein (474 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.97 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.97 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| PTZ00421 | 493 | coronin; Provisional | 99.97 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| PTZ00420 | 568 | coronin; Provisional | 99.96 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.95 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.95 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.93 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.93 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.93 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.93 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.92 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.92 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.92 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.91 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.91 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.91 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.91 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.91 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.91 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.91 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.89 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.88 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.88 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.88 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.87 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.87 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.87 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.87 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.87 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.86 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.84 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.84 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.84 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.84 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.83 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.83 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.82 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.81 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.81 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.8 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.8 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.79 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.78 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.76 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.76 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.76 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.76 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.75 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.75 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.73 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.72 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.71 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.71 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.71 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.7 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.69 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.69 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.68 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.67 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.67 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.64 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.63 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.63 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.63 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.62 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.62 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.61 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.61 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.61 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.6 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.59 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.58 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.55 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.55 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.54 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.53 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.52 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.5 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.49 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.49 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.49 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.48 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.47 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.45 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.45 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.44 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.44 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.44 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.43 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.42 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.42 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.42 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.42 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.41 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.41 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.41 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.41 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.41 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.4 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.39 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.38 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.38 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.38 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.36 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.36 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.36 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.32 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.32 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.32 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.3 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.29 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.29 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.29 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.26 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.24 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.22 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.22 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.21 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.17 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.16 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.15 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.09 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.08 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.99 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.97 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.97 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.96 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.96 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.96 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.96 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 98.94 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 98.94 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.93 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.92 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.91 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.87 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 98.85 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.81 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.78 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.78 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.76 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.76 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.74 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.69 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.69 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.69 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 98.67 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.64 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.63 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.62 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.62 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.58 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.57 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.56 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.5 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.5 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.49 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.46 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.44 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.44 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.41 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.34 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.33 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.32 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.29 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.18 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.17 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.16 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 98.12 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.1 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.08 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.06 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.04 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.03 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.96 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.91 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.85 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.83 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.78 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.76 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.75 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.71 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.61 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.6 | |
| PRK10115 | 686 | protease 2; Provisional | 97.59 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 97.57 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.48 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 97.43 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.35 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.33 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.28 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.19 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.14 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.13 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.13 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.08 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.05 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.05 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.01 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 96.96 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.92 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.79 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 96.77 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.63 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 96.61 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.51 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 96.49 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.49 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.45 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.41 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.38 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.37 | |
| PRK10115 | 686 | protease 2; Provisional | 96.36 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 96.35 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.31 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 96.21 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 96.18 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.11 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.99 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.94 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 95.92 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.88 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 95.82 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.82 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.74 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.66 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.61 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.6 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.46 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.32 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 95.31 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 95.19 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.13 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.93 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.8 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.79 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 94.76 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 94.66 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.58 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.27 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 93.94 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 93.75 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 93.69 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.48 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 93.39 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 93.24 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 92.89 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 92.7 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 92.31 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 91.94 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 91.89 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.73 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 91.21 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 91.01 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 90.75 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 90.19 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.35 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 89.27 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 89.12 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 89.11 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 89.03 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 88.94 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.82 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 88.79 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 88.4 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 88.05 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 87.56 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.32 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 87.12 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 86.92 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 86.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 86.68 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 86.5 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.0 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 85.86 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 85.46 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 84.51 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 84.5 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 83.82 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 83.76 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 83.59 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 83.37 | |
| PF07250 | 243 | Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP | 82.89 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 82.44 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 81.64 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 80.9 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 80.9 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 80.7 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 80.51 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-54 Score=438.39 Aligned_cols=321 Identities=13% Similarity=0.198 Sum_probs=289.7
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
-|.++|.++.|+ +..||+||-|.|+|+||..|..++.|..+ |.++|-+|+++|||+.|||++.+ .+|
T Consensus 113 GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg-H~~WVlcvawsPDgk~iASG~~d----------g~I 181 (480)
T KOG0271|consen 113 GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG-HKNWVLCVAWSPDGKKIASGSKD----------GSI 181 (480)
T ss_pred CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC-CccEEEEEEECCCcchhhccccC----------CeE
Confidence 488889999999 89999999999999999999999999988 99999999999999999997743 499
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeC----CCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCC
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPG 244 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~----pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg 244 (485)
+|||..+|+... .+|- +|.+|+..++|-| |..++|||+|.|++|||||+..++|++++.+| .|.+|.+--+
T Consensus 182 ~lwdpktg~~~g-~~l~--gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 182 RLWDPKTGQQIG-RALR--GHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred EEecCCCCCccc-cccc--CcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC
Confidence 999999998732 3333 3678999998853 56889999999999999999999999999764 7999999866
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe-----------------------------------cC
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE-----------------------------------QF 289 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~-----------------------------------~~ 289 (485)
+.+.++ +.|.|||+|+..+|+++.+|+||.|+|+.++.+. +.
T Consensus 259 gliySg---S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~ 335 (480)
T KOG0271|consen 259 GLIYSG---SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDS 335 (480)
T ss_pred ceEEec---CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccC
Confidence 666543 5679999999999999999999999999888761 12
Q ss_pred CCEEEEEeCCCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
+|.|+++++|.|+-+|+.. +.+++..+.||+.-|+.|.||||++++||+| |..|||||.+ |+.+.+|.||-..
T Consensus 336 ~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~---- 411 (480)
T KOG0271|consen 336 GERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAA---- 411 (480)
T ss_pred cceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccce----
Confidence 3579999999999999965 5568999999999999999999999999999 9999999996 9999999999988
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHAS 446 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (485)
|+.|++|.|.++|+|||+ |.|+|+||+.|.|....|.||.+
T Consensus 412 -VYqvawsaDsRLlVS~Sk-----------DsTLKvw~V~tkKl~~DLpGh~D--------------------------- 452 (480)
T KOG0271|consen 412 -VYQVAWSADSRLLVSGSK-----------DSTLKVWDVRTKKLKQDLPGHAD--------------------------- 452 (480)
T ss_pred -eEEEEeccCccEEEEcCC-----------CceEEEEEeeeeeecccCCCCCc---------------------------
Confidence 999999999999999998 79999999999999999999985
Q ss_pred ccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 447 RIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 447 ~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|.++|||+.++||+.|+.+|||.
T Consensus 453 -----------EVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 453 -----------EVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred -----------eEEEEEecCCCceeecCCCceEEEeec
Confidence 899999999999999999999999995
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=391.12 Aligned_cols=282 Identities=14% Similarity=0.123 Sum_probs=254.6
Q ss_pred ecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC-CCeEEEE
Q 011452 132 NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV-NGKVLTY 210 (485)
Q Consensus 132 ~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~Las 210 (485)
+.+.+.+|-.++||+|++.|||+|.. +++++|..+++.+. ..|. +|...+..++|.|. ++..|||
T Consensus 171 Q~gd~rPis~~~fS~ds~~laT~sws----------G~~kvW~~~~~~~~---~~l~-gH~~~v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 171 QVGDTRPISGCSFSRDSKHLATGSWS----------GLVKVWSVPQCNLL---QTLR-GHTSRVGAAVFHPVDSDLNLAT 236 (459)
T ss_pred hccCCCcceeeEeecCCCeEEEeecC----------CceeEeecCCccee---EEEe-ccccceeeEEEccCCCccceee
Confidence 44467789999999999999999864 48999999888652 2344 36677889999977 4889999
Q ss_pred eeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 211 SAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
||.||++|+|++.+-+++..|.+ ..|..|+|+|+|..|.++ +.|.|-+|||++|++++--.+||...+.+++|. |
T Consensus 237 ~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Ta--sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~-~ 313 (459)
T KOG0272|consen 237 ASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTA--SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQ-P 313 (459)
T ss_pred eccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeec--ccccchhhcccccchhhHhhcccccccceeEec-C
Confidence 99999999999999889888865 489999999966666554 467999999999999999999999999999996 7
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
||..+++||.|..-||||+++|.|+.+|.||...|.+|+|||+|..||||+ |+|+||||++ -.+++++.+|.+-
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl---- 389 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL---- 389 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----
Confidence 787777789999999999999999999999999999999999999999999 9999999998 7789999999988
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
|..|.|+| -|++|+|+|. |+|+|||.-.+++|+++|.||++
T Consensus 390 -VS~Vk~~p~~g~fL~Tasy-----------D~t~kiWs~~~~~~~ksLaGHe~-------------------------- 431 (459)
T KOG0272|consen 390 -VSQVKYSPQEGYFLVTASY-----------DNTVKIWSTRTWSPLKSLAGHEG-------------------------- 431 (459)
T ss_pred -hhheEecccCCeEEEEccc-----------CcceeeecCCCcccchhhcCCcc--------------------------
Confidence 99999999 8999999998 79999999999999999999984
Q ss_pred cccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 446 SRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+|+++|||+.|+|+|.|.|+|||.
T Consensus 432 ------------kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 432 ------------KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------ceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999999999999995
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=383.27 Aligned_cols=285 Identities=15% Similarity=0.224 Sum_probs=251.6
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVN 204 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pn 204 (485)
.|-..+.| |.+.|-|+.|+|+|..|||+| .| .|+||||+.+..+ +|+. +|..|+-+|+++ ||
T Consensus 106 rCssS~~G-H~e~Vl~~~fsp~g~~l~tGs----GD------~TvR~WD~~TeTp-----~~t~KgH~~WVlcvaws-PD 168 (480)
T KOG0271|consen 106 RCSSSIAG-HGEAVLSVQFSPTGSRLVTGS----GD------TTVRLWDLDTETP-----LFTCKGHKNWVLCVAWS-PD 168 (480)
T ss_pred eeccccCC-CCCcEEEEEecCCCceEEecC----CC------ceEEeeccCCCCc-----ceeecCCccEEEEEEEC-CC
Confidence 34556777 999999999999999999976 34 5999999876655 5665 678899999998 89
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEE-EEEcC--CcEEEEEEcC-----CceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTML-YSISD--KNVQEIKISP-----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l-~tl~~--~~V~~VafSp-----g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
|+.||||+.|++|++||.++|+++ .+|.+ .+|.+++|-| +..++++++ .|++|+|||+.-|+|+.++.||
T Consensus 169 gk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s--kDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 169 GKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS--KDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred cchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc--CCCCEEEEEccCceEEEEeccC
Confidence 999999999999999999999965 56655 5899999986 455666544 5689999999999999999999
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc-----------CC--------------
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL-----------YE-------------- 331 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs-----------pd-------------- 331 (485)
+..|..|.+- ..+.|.++|.|+|||+|+...|.|.+.|+||..+|+.++.| |-
T Consensus 247 T~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~A 324 (480)
T KOG0271|consen 247 TASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKA 324 (480)
T ss_pred ccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHH
Confidence 9999999983 24677778999999999999999999999999999999988 22
Q ss_pred -----------CcEEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 332 -----------NQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 332 -----------g~llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
+..|+|++ |.|+-||+- . -++++.+.||+.- ||.|+|||||++|||+|. |
T Consensus 325 l~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~l-----Vn~V~fSPd~r~IASaSF-----------D 388 (480)
T KOG0271|consen 325 LERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQAL-----VNHVSFSPDGRYIASASF-----------D 388 (480)
T ss_pred HHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhh-----eeeEEECCCccEEEEeec-----------c
Confidence 34599999 999999998 3 7799999999987 999999999999999999 7
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.+|||||-.|||.|++|+||-. .|+.|++|.|.+.|+|||.|
T Consensus 389 kSVkLW~g~tGk~lasfRGHv~--------------------------------------~VYqvawsaDsRLlVS~SkD 430 (480)
T KOG0271|consen 389 KSVKLWDGRTGKFLASFRGHVA--------------------------------------AVYQVAWSADSRLLVSGSKD 430 (480)
T ss_pred cceeeeeCCCcchhhhhhhccc--------------------------------------eeEEEEeccCccEEEEcCCC
Confidence 9999999999999999999963 89999999999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
.|+|+|+.
T Consensus 431 sTLKvw~V 438 (480)
T KOG0271|consen 431 STLKVWDV 438 (480)
T ss_pred ceEEEEEe
Confidence 99999984
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=376.79 Aligned_cols=265 Identities=16% Similarity=0.142 Sum_probs=237.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
++.||++|.+|++|+|+..+++.+++|.| |.+.|-.+.|+|. +..|||+|+| ++++||++..-.+.+
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~g-H~~~v~~~~fhP~~~~~~lat~s~D----------gtvklw~~~~e~~l~ 255 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRG-HTSRVGAAVFHPVDSDLNLATASAD----------GTVKLWKLSQETPLQ 255 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEec-cccceeeEEEccCCCccceeeeccC----------CceeeeccCCCcchh
Confidence 99999999999999999999999999998 8889999999998 6689998864 499999975544422
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE--EcCCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t--l~~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
-++ +|...+..|+|. |+|++|++++.|.|-||||+.+++++.- .|...|.+|+|.|+|.|++++ +.|..-+
T Consensus 256 ---~l~-gH~~RVs~VafH-PsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tG--GlD~~~R 328 (459)
T KOG0272|consen 256 ---DLE-GHLARVSRVAFH-PSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATG--GLDSLGR 328 (459)
T ss_pred ---hhh-cchhhheeeeec-CCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeecc--Cccchhh
Confidence 223 355667789997 8999999999999999999999996544 455689999999999998774 4678999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
|||+.+|.++..|.||...|.+|+|+ |.|-.|++||.|+|+||||++...++.++.+|.+-|+.|.|+| .|++|+|++
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas 407 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTAS 407 (459)
T ss_pred eeecccCcEEEEecccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcc
Confidence 99999999999999999999999997 5566667789999999999999999999999999999999999 899999999
Q ss_pred -CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 340 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 340 -D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|+|+|||..+ +.++++|.||... |.++.+||||++|+|++. |.|||||.
T Consensus 408 yD~t~kiWs~~~~~~~ksLaGHe~k-----V~s~Dis~d~~~i~t~s~-----------DRT~KLW~ 458 (459)
T KOG0272|consen 408 YDNTVKIWSTRTWSPLKSLAGHEGK-----VISLDISPDSQAIATSSF-----------DRTIKLWR 458 (459)
T ss_pred cCcceeeecCCCcccchhhcCCccc-----eEEEEeccCCceEEEecc-----------Cceeeecc
Confidence 9999999996 9999999999987 999999999999999998 79999995
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=342.92 Aligned_cols=281 Identities=15% Similarity=0.239 Sum_probs=246.4
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
+.+ |...|+.|-|.|+--..+++| +| .++++||..+|++..+ |- +|...+..|+|+ .-|++||+
T Consensus 104 l~g-~r~~vt~v~~hp~~~~v~~as----~d------~tikv~D~~tg~~e~~--Lr--GHt~sv~di~~~-a~Gk~l~t 167 (406)
T KOG0295|consen 104 LAG-HRSSVTRVIFHPSEALVVSAS----ED------ATIKVFDTETGELERS--LR--GHTDSVFDISFD-ASGKYLAT 167 (406)
T ss_pred hhc-cccceeeeeeccCceEEEEec----CC------ceEEEEEccchhhhhh--hh--ccccceeEEEEe-cCccEEEe
Confidence 445 888999999999888777755 45 6999999999998431 22 345567789998 68999999
Q ss_pred eeCCCcEEEeecCC-CeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe
Q 011452 211 SAQDSIYKVFDLKN-YTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (485)
Q Consensus 211 ~s~D~tiKlWdl~~-g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~ 287 (485)
+|.|=.+++||+.+ ++|+.++++ +.|.+|+|=|-+-.+.|+ +.|+|||.|++.||.|+++|.+|...+.-|+-.
T Consensus 168 cSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~--srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~- 244 (406)
T KOG0295|consen 168 CSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSC--SRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVN- 244 (406)
T ss_pred cCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeec--ccccceeEEecccceeEEeccCchHhEEEEEec-
Confidence 99999999999987 678888764 689999999944444443 456999999999999999999999999888865
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC---------------CcEEEEEe-CCcEEEEeCC-C
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE---------------NQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd---------------g~llaS~s-D~TIklWd~~-G 350 (485)
+||..+++++.|.||++|-+.+++|...+++|.+.|.+++|-|+ ||.++++| |+|||+||+. |
T Consensus 245 ~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 245 QDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred CCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC
Confidence 66666666789999999999999999999999999999999653 47999999 9999999996 9
Q ss_pred cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCC
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSG 430 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~ 430 (485)
.|+.||.||..| |.+++|+|-|+||+|+.+ |+|+|+||+++++|+.++++|+.
T Consensus 325 ~cL~tL~ghdnw-----Vr~~af~p~Gkyi~ScaD-----------Dktlrvwdl~~~~cmk~~~ah~h----------- 377 (406)
T KOG0295|consen 325 MCLFTLVGHDNW-----VRGVAFSPGGKYILSCAD-----------DKTLRVWDLKNLQCMKTLEAHEH----------- 377 (406)
T ss_pred eEEEEEecccce-----eeeeEEcCCCeEEEEEec-----------CCcEEEEEeccceeeeccCCCcc-----------
Confidence 999999999999 999999999999999886 89999999999999999999983
Q ss_pred CCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 431 DYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+++.|.-+-.+++|||-|.++|+|.
T Consensus 378 ---------------------------fvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 378 ---------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ---------------------------eeEEEecCCCCceEEeccccceeeeee
Confidence 899999999999999999999999995
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=322.46 Aligned_cols=285 Identities=12% Similarity=0.161 Sum_probs=250.9
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L 208 (485)
++|.| |.+.|.++-|++|.+.|+|+|.|| .+-|||--+..-..+++| ...|+-.+||+ |.|+.+
T Consensus 49 r~LkG-H~~Ki~~~~ws~Dsr~ivSaSqDG----------klIvWDs~TtnK~haipl----~s~WVMtCA~s-PSg~~V 112 (343)
T KOG0286|consen 49 RTLKG-HLNKIYAMDWSTDSRRIVSASQDG----------KLIVWDSFTTNKVHAIPL----PSSWVMTCAYS-PSGNFV 112 (343)
T ss_pred EEecc-cccceeeeEecCCcCeEEeeccCC----------eEEEEEcccccceeEEec----CceeEEEEEEC-CCCCeE
Confidence 57887 888999999999999999988643 777999866554333332 33588899998 899999
Q ss_pred EEeeCCCcEEEeecCCC------eEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 209 TYSAQDSIYKVFDLKNY------TMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g------~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|.|+-|+..-|+++++- .....+.+ ..+.+..|-+++.|+++ ++|.|.-|||+|+|+.+..|.||++-|
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~---SGD~TCalWDie~g~~~~~f~GH~gDV 189 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTG---SGDMTCALWDIETGQQTQVFHGHTGDV 189 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceEec---CCCceEEEEEcccceEEEEecCCcccE
Confidence 99999999999999855 12344544 57999999999999876 456899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
.++++.|.++..+++++-|++.+|||++.+.|.+++.||...|++|.|-|+|.-|+||| |+|.+++|++ .+.+..++.
T Consensus 190 ~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 190 MSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred EEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 99999754788899999999999999999999999999999999999999999999999 9999999997 888888873
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
.. ..+.|++|+||-.|++|..|.. |.++++||..-|+.+.+|.||++
T Consensus 270 -~~--~~~gitSv~FS~SGRlLfagy~-----------d~~c~vWDtlk~e~vg~L~GHeN------------------- 316 (343)
T KOG0286|consen 270 -DS--IICGITSVAFSKSGRLLFAGYD-----------DFTCNVWDTLKGERVGVLAGHEN------------------- 316 (343)
T ss_pred -Cc--ccCCceeEEEcccccEEEeeec-----------CCceeEeeccccceEEEeeccCC-------------------
Confidence 32 3466999999999999999875 79999999999999999999985
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|..+|||--|+|||+|.++|||.
T Consensus 317 -------------------RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 317 -------------------RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred -------------------eeEEEEECCCCcEEEecchhHheeecC
Confidence 899999999999999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=290.18 Aligned_cols=284 Identities=15% Similarity=0.264 Sum_probs=243.3
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
++++.+ |...|.++.|+|+++.|++++. + +.+.+|++..++... .+. .+...+..+.|+ |+++.
T Consensus 2 ~~~~~~-h~~~i~~~~~~~~~~~l~~~~~----~------g~i~i~~~~~~~~~~---~~~-~~~~~i~~~~~~-~~~~~ 65 (289)
T cd00200 2 RRTLKG-HTGGVTCVAFSPDGKLLATGSG----D------GTIKVWDLETGELLR---TLK-GHTGPVRDVAAS-ADGTY 65 (289)
T ss_pred chHhcc-cCCCEEEEEEcCCCCEEEEeec----C------cEEEEEEeeCCCcEE---EEe-cCCcceeEEEEC-CCCCE
Confidence 345665 8889999999999999998763 3 599999998776421 122 233344578997 78899
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
|++++.|++|++||+.+++.+..+.. ..|.+++|+|++.+++++. .|+.|++||+.+++.+..+..|...+..++|
T Consensus 66 l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 143 (289)
T cd00200 66 LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS--RDKTIKVWDVETGKCLTTLRGHTDWVNSVAF 143 (289)
T ss_pred EEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec--CCCeEEEEECCCcEEEEEeccCCCcEEEEEE
Confidence 99999999999999998887777754 4799999998766666644 3589999999999999999988888999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 363 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~ 363 (485)
. +++..+++++.|+.|++||+++++++..+..|...+.++.|+|+++.|++++ |+.|++||++ ++++..+.+|...
T Consensus 144 ~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~- 221 (289)
T cd00200 144 S-PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENG- 221 (289)
T ss_pred c-CcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCc-
Confidence 7 4455555566799999999999999999999999999999999999999988 9999999997 9999999888876
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
+..++|+|++.++++++. |++|++||+.+++++..+.+|..
T Consensus 222 ----i~~~~~~~~~~~~~~~~~-----------~~~i~i~~~~~~~~~~~~~~~~~------------------------ 262 (289)
T cd00200 222 ----VNSVAFSPDGYLLASGSE-----------DGTIRVWDLRTGECVQTLSGHTN------------------------ 262 (289)
T ss_pred ----eEEEEEcCCCcEEEEEcC-----------CCcEEEEEcCCceeEEEccccCC------------------------
Confidence 899999999999999875 69999999999999999998862
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+++|+|+++.|++++.|+.|++|+
T Consensus 263 --------------~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 263 --------------SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------------cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 899999999999999999999999997
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=310.95 Aligned_cols=296 Identities=13% Similarity=0.163 Sum_probs=234.8
Q ss_pred EEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc--ceeeeccccCceEEEEeCC
Q 011452 127 RICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF--ALFESESLKWPGFVEFDDV 203 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~--~lf~~~~~~~~~~V~Fs~p 203 (485)
+.-||++ |.++|..++..+.+ +.|.++| -| .++-+|++..-....|. +.|+. |-..+..|..+ +
T Consensus 7 l~~tl~g-h~d~Vt~la~~~~~~~~l~sas----rD------k~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s-~ 73 (315)
T KOG0279|consen 7 LRGTLEG-HTDWVTALAIKIKNSDILVSAS----RD------KTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLS-S 73 (315)
T ss_pred eeeeecC-CCceEEEEEeecCCCceEEEcc----cc------eEEEEEEeccCccccCceeeeeec-cceEecceEEc-c
Confidence 3447777 88899999999985 4555555 34 68999998443333332 23432 33345568887 7
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC--Ccc
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL--LHR 279 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~--~~~ 279 (485)
||++..|+|.|+++|+||+.+|+....| |...|.+|+|||+..-+++++ .|+||||||+- |.|..++..+ ...
T Consensus 74 dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGS--rDkTiklwnt~-g~ck~t~~~~~~~~W 150 (315)
T KOG0279|consen 74 DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGS--RDKTIKLWNTL-GVCKYTIHEDSHREW 150 (315)
T ss_pred CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCC--Ccceeeeeeec-ccEEEEEecCCCcCc
Confidence 9999999999999999999999876655 556899999998777777654 56999999985 5677777644 577
Q ss_pred eeEEEEEecC-CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQF-NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
|..|.|+|.. +-+|+++|+|+|||+||+++-++...+.||++.+++++|||||.+.+||+ |+.+-|||++ |+.+++|
T Consensus 151 VscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl 230 (315)
T KOG0279|consen 151 VSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL 230 (315)
T ss_pred EEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec
Confidence 8899998543 56788889999999999999999999999999999999999999999999 9999999996 9999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
++. .. |++++|+|+--.|+-+. +.+|||||+.+++|+.+|+----
T Consensus 231 ~a~-~~-----v~sl~fspnrywL~~at------------~~sIkIwdl~~~~~v~~l~~d~~----------------- 275 (315)
T KOG0279|consen 231 EAF-DI-----VNSLCFSPNRYWLCAAT------------ATSIKIWDLESKAVVEELKLDGI----------------- 275 (315)
T ss_pred cCC-Ce-----EeeEEecCCceeEeecc------------CCceEEEeccchhhhhhcccccc-----------------
Confidence 754 33 99999999988887765 47799999999999999875321
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+..+. .. -.-.+|+||+||++|++|-.|+.|++|..
T Consensus 276 g~s~~~--------~~----~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 276 GPSSKA--------GD----PICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred cccccc--------CC----cEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 000000 01 14567999999999999999999999963
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-38 Score=351.07 Aligned_cols=317 Identities=14% Similarity=0.171 Sum_probs=247.4
Q ss_pred CCeEEeeecccCcEEEEeecC----CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC---cccce
Q 011452 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD---AGFAL 186 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~----~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~---~~~~l 186 (485)
+|.|++|+..+-+....+..+ |.+.|.+|+|+|+|+.||+++. | ++++||++...... ...+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~----D------~~I~iwd~~~~~~~~~~~~~~~ 526 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGV----N------KKIKIFECESIIKDGRDIHYPV 526 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeC----C------CEEEEEECCcccccccccccce
Confidence 788999998755544444322 7889999999999999999774 4 59999997432111 00111
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEe
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWd 263 (485)
........+..++|+++++.+||+++.|++|+|||+.+++++.++. ...|++|+|+| ++.++++++ .|++|+|||
T Consensus 527 ~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs--~Dg~v~iWd 604 (793)
T PLN00181 527 VELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS--DDGSVKLWS 604 (793)
T ss_pred EEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc--CCCEEEEEE
Confidence 2211123355789987778999999999999999999999888875 45799999996 666555544 458999999
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CC
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR 341 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~ 341 (485)
+.+|+++.++.++ ..+..+.|.++++..+++++.|++|++||+++++ .+.++.+|...|.++.|+ ++.+|+|++ |+
T Consensus 605 ~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~ 682 (793)
T PLN00181 605 INQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDN 682 (793)
T ss_pred CCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCC
Confidence 9999999999865 5788999987778889999999999999999876 577888999999999997 778899999 99
Q ss_pred cEEEEeCC-------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 342 TVAVWNFR-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 342 TIklWd~~-------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+|+|||++ ++++.+|++|... ++.++|+|+|++||+|+. |++|+||+..+++.+..+
T Consensus 683 ~ikiWd~~~~~~~~~~~~l~~~~gh~~~-----i~~v~~s~~~~~lasgs~-----------D~~v~iw~~~~~~~~~s~ 746 (793)
T PLN00181 683 TLKLWDLSMSISGINETPLHSFMGHTNV-----KNFVGLSVSDGYIATGSE-----------TNEVFVYHKAFPMPVLSY 746 (793)
T ss_pred EEEEEeCCCCccccCCcceEEEcCCCCC-----eeEEEEcCCCCEEEEEeC-----------CCEEEEEECCCCCceEEE
Confidence 99999985 3688999999877 899999999999999997 799999998877655443
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.-....+... . ..+.....|.+|+|+|+|+.|++|+.||+|+||++
T Consensus 747 ~~~~~~~~~~-------------~------------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 747 KFKTIDPVSG-------------L------------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred ecccCCcccc-------------c------------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 2211000000 0 00011137999999999999999999999999984
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=322.29 Aligned_cols=278 Identities=12% Similarity=0.131 Sum_probs=242.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
++++|..|.|- --++|++++|+|+|+||..||++..+|.| |.+.|.+|+|..-|++||++|. | -+++
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrG-Ht~sv~di~~~a~Gk~l~tcSs----D------l~~~ 175 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRG-HTDSVFDISFDASGKYLATCSS----D------LSAK 175 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhc-cccceeEEEEecCccEEEecCC----c------cchh
Confidence 78889999888 66778888999999999999999999998 7778999999999999999885 3 1488
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~ 249 (485)
+||... ....-..+..+++ -+-+|.|- |.|.+|+|++.|.|||.|++.+|-|++++.+ .+|..|+.+-||.|++
T Consensus 176 LWd~~~-~~~c~ks~~gh~h--~vS~V~f~-P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A 251 (406)
T KOG0295|consen 176 LWDFDT-FFRCIKSLIGHEH--GVSSVFFL-PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA 251 (406)
T ss_pred heeHHH-HHHHHHHhcCccc--ceeeEEEE-ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE
Confidence 999522 1111111333333 24579997 7999999999999999999999999999975 5899999998888877
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec---------C-----CCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ---------F-----NEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~---------~-----~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
++ +.|+||++|-+++++|...|++|.+.+..|+|.+. . ++.+.+++.|+|||+||+.+|.|+-+
T Consensus 252 s~--s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 252 SC--SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ec--CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 65 46699999999999999999999999999999641 1 13677789999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
|.||..+|..++|+|.|++|+|+. |+|+++||++ ++|..+++.|... |+++.|..+--+++||+-
T Consensus 330 L~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hf-----vt~lDfh~~~p~VvTGsV-------- 396 (406)
T KOG0295|consen 330 LVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHF-----VTSLDFHKTAPYVVTGSV-------- 396 (406)
T ss_pred EecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcce-----eEEEecCCCCceEEeccc--------
Confidence 999999999999999999999999 9999999996 9999999999988 999999999999999997
Q ss_pred cCCCCeEEEEe
Q 011452 394 EGNAGSINISN 404 (485)
Q Consensus 394 ~~~DgtIklWd 404 (485)
|.++|+|.
T Consensus 397 ---dqt~KvwE 404 (406)
T KOG0295|consen 397 ---DQTVKVWE 404 (406)
T ss_pred ---cceeeeee
Confidence 79999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=329.69 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=248.9
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
..++.+.+...|.++.|+|||+.|++++. + +++++|+...++......+ .++...+..++|+ |+|++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~----~------~~i~~~~~~~~~~~~~~~l--~~h~~~v~~~~fs-~d~~~ 217 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASS----D------GLIRIWKLEGIKSNLLREL--SGHTRGVSDVAFS-PDGSY 217 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccC----C------CcEEEeecccccchhhccc--cccccceeeeEEC-CCCcE
Confidence 34555555778999999999999988764 3 5899999866662000112 2456667789998 89999
Q ss_pred EEEeeCCCcEEEeec-CCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDL-KNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl-~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
|++++.|++|||||+ ..+.+++++.+| .|.+++|+|.+.++++++ .|.+|||||+++|+++.+|++|.+.+..++
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 999999999999999 677899999764 799999999776666654 568999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCe--eEEecccCCCc--eEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRTEFMT--PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~--v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
|. +++..|++++.|++|+|||+.+++ |.+.+.++... ++.+.|+|+|++|+++. |+++++||+. ++++.++.+
T Consensus 296 f~-~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~ 374 (456)
T KOG0266|consen 296 FS-PDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTG 374 (456)
T ss_pred EC-CCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecc
Confidence 96 788899999999999999999999 67888777666 89999999999999999 9999999997 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|.... .| +.+..++++|++|+|++. |++|.+||+.++..++.+.+|..
T Consensus 375 ~~~~~-~~-~~~~~~~~~~~~i~sg~~-----------d~~v~~~~~~s~~~~~~l~~h~~------------------- 422 (456)
T KOG0266|consen 375 HSNLV-RC-IFSPTLSTGGKLIYSGSE-----------DGSVYVWDSSSGGILQRLEGHSK------------------- 422 (456)
T ss_pred cCCcc-ee-EecccccCCCCeEEEEeC-----------CceEEEEeCCccchhhhhcCCCC-------------------
Confidence 98751 24 466677999999999997 79999999999999999999931
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEec--CCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN--RHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs--~DgtVklWd 484 (485)
..|..+.++|..+++++++ .|+.|++|.
T Consensus 423 ------------------~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 423 ------------------AAVSDLSSHPTENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred ------------------CceeccccCCCcCeeeecCcCCCceEEEec
Confidence 1788899999999999999 799999996
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-38 Score=335.12 Aligned_cols=326 Identities=12% Similarity=0.144 Sum_probs=257.3
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
...|..||.-.+|. +-.+|+++-||++++||+..|.++..|.| |.++|.++.|+|+=.+...+| |..| .
T Consensus 101 Ka~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG-~gGvVssl~F~~~~~~~lL~s--g~~D------~ 171 (775)
T KOG0319|consen 101 KAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKG-HGGVVSSLLFHPHWNRWLLAS--GATD------G 171 (775)
T ss_pred hhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecC-CCceEEEEEeCCccchhheee--cCCC------c
Confidence 33467788877777 99999999999999999999999999998 888999999999876633333 4456 7
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCC---
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPG--- 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSpg--- 244 (485)
++++|++.++..- ..++. .|..++.+++|+ +|+..+.|++.|+++-|||+.+++++.+++- ..+.++.+-+.
T Consensus 172 ~v~vwnl~~~~tc--l~~~~-~H~S~vtsL~~~-~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~ 247 (775)
T KOG0319|consen 172 TVRVWNLNDKRTC--LHTMI-LHKSAVTSLAFS-EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG 247 (775)
T ss_pred eEEEEEcccCchH--HHHHH-hhhhheeeeeec-cCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence 9999999766540 11232 366778899998 7999999999999999999999998888863 45666666543
Q ss_pred --ceEEEEEcCCCCeeEEEEecCCCeEEEE--------------------------------------------------
Q 011452 245 --IMLLIFTKASGHVPLKILSIEDGTVLKS-------------------------------------------------- 272 (485)
Q Consensus 245 --~~ll~sss~~~D~tIklWdi~tG~~L~t-------------------------------------------------- 272 (485)
+.++.++++ ++.+++||.++|+++..
T Consensus 248 ~~~~~~~TaG~--~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndE 325 (775)
T KOG0319|consen 248 GKGEYIITAGG--SGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDE 325 (775)
T ss_pred CcceEEEEecC--CceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchh
Confidence 223333332 25777777776665532
Q ss_pred --------------------------------------------------------------------------------
Q 011452 273 -------------------------------------------------------------------------------- 272 (485)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (485)
T Consensus 326 I~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a 405 (775)
T KOG0319|consen 326 ILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVA 405 (775)
T ss_pred heeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhh
Confidence
Q ss_pred -eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---------eEEecccCCCceEEEEEcCCCcEEEEEe-CC
Q 011452 273 -FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR 341 (485)
Q Consensus 273 -l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------~~~~l~gh~~~v~avaFspdg~llaS~s-D~ 341 (485)
.+||.+.+..|+++--....++++|.|.|||+|++...+ +..+.+.|...|++|+.+|+.+++||+| |+
T Consensus 406 ~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDk 485 (775)
T KOG0319|consen 406 QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDK 485 (775)
T ss_pred hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccccc
Confidence 122333333333322112356777888888888887522 2224467999999999999999999999 99
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~ 420 (485)
|.|||+++ ++++.+|.||.-- |++|.|+|..|++|++|. |+|||||.|.|..|++||.||+.
T Consensus 486 taKiW~le~~~l~~vLsGH~RG-----vw~V~Fs~~dq~laT~Sg-----------D~TvKIW~is~fSClkT~eGH~~- 548 (775)
T KOG0319|consen 486 TAKIWDLEQLRLLGVLSGHTRG-----VWCVSFSKNDQLLATCSG-----------DKTVKIWSISTFSCLKTFEGHTS- 548 (775)
T ss_pred ceeeecccCceEEEEeeCCccc-----eEEEEeccccceeEeccC-----------CceEEEEEeccceeeeeecCccc-
Confidence 99999996 9999999999976 999999999999999987 79999999999999999999983
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.-+.|=-+|+.|+|++.||.||||++
T Consensus 549 -------------------------------------aVlra~F~~~~~qliS~~adGliKlWni 576 (775)
T KOG0319|consen 549 -------------------------------------AVLRASFIRNGKQLISAGADGLIKLWNI 576 (775)
T ss_pred -------------------------------------eeEeeeeeeCCcEEEeccCCCcEEEEec
Confidence 7888999999999999999999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=320.84 Aligned_cols=360 Identities=13% Similarity=0.179 Sum_probs=299.3
Q ss_pred ccchhHH-HhhhccccccccccCCCCccc-ccccccccc------cceEEEEEe--cCEEEEEeCCCeEEeeecccCcE-
Q 011452 59 TMTDAQE-RFRNIRLQEEYDTHDPKGHCS-MVLPFLRKR------SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQR- 127 (485)
Q Consensus 59 ~~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~------s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~- 127 (485)
...++|. +|=-+++++..++|..|.... .|+||..+| ..|.+|-++ ..+|+++|.|-++|||.++..+-
T Consensus 101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~ 180 (893)
T KOG0291|consen 101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL 180 (893)
T ss_pred eEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc
Confidence 3445554 455678888889999888877 889987665 469999999 89999999999999999886555
Q ss_pred -EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCCcCc--------------------cc
Q 011452 128 -ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDA--------------------GF 184 (485)
Q Consensus 128 -l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~~~~--------------------~~ 184 (485)
.+.+++ |.+.|-.-||..|...|.++|.|| .+-+|... -++++. ..
T Consensus 181 ~~~~l~g-Hkd~VvacfF~~~~~~l~tvskdG----------~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~ 249 (893)
T KOG0291|consen 181 FTYALNG-HKDYVVACFFGANSLDLYTVSKDG----------ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTH 249 (893)
T ss_pred ceEeccC-CCcceEEEEeccCcceEEEEecCc----------eEEEEEecCCCcccccccccccccccccccccchhhhc
Confidence 666777 888999999999999999999654 66677652 111111 00
Q ss_pred ce-eee-------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEEcC
Q 011452 185 AL-FES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKA 253 (485)
Q Consensus 185 ~l-f~~-------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg~~ll~sss~ 253 (485)
+. |.. +...-+.+.+|. +.-.+||.|=..|...|+.+...++++.++ ++.|..++|+ .|..+|..++.
T Consensus 250 ~~~~~k~~k~~ln~~~~kvtaa~fH-~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~k 328 (893)
T KOG0291|consen 250 KIFWYKTKKHYLNQNSSKVTAAAFH-KGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSK 328 (893)
T ss_pred ceEEEEEEeeeecccccceeeeecc-CCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCc
Confidence 11 110 111234467896 678899999889999999999999999886 6899999999 58888887654
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ 333 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ 333 (485)
-+.+-+|+.++-.-+....+|...+.+++++ |||+.+++|++|+.|||||.++|-|+.++..|+..|.+|.|+..|+
T Consensus 329 --lgQLlVweWqsEsYVlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~ 405 (893)
T KOG0291|consen 329 --LGQLLVWEWQSESYVLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGN 405 (893)
T ss_pred --cceEEEEEeeccceeeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCC
Confidence 3689999998866667777999999999997 7899999999999999999999999999999999999999999999
Q ss_pred EEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 334 LFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 334 llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
.++|+| ||||+.||+ ++..-+||+.-..-+ ...|+..|.|.++..|+.| -=-|.||+++|||++
T Consensus 406 ~llssSLDGtVRAwDlkRYrNfRTft~P~p~Q----fscvavD~sGelV~AG~~d----------~F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 406 VLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQ----FSCVAVDPSGELVCAGAQD----------SFEIFVWSVQTGQLL 471 (893)
T ss_pred EEEEeecCCeEEeeeecccceeeeecCCCcee----eeEEEEcCCCCEEEeeccc----------eEEEEEEEeecCeee
Confidence 999999 999999999 599999998765432 6788999999999988862 346999999999999
Q ss_pred EEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 412 AKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 412 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-.|.||++ +|.+|+|+|+|+.|||||+|+|||+||+
T Consensus 472 DiLsGHEg--------------------------------------PVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 472 DILSGHEG--------------------------------------PVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred ehhcCCCC--------------------------------------cceeeEEccccCeEEeccccceEEEEEe
Confidence 99999984 9999999999999999999999999984
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=327.65 Aligned_cols=320 Identities=16% Similarity=0.182 Sum_probs=259.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~ 166 (485)
|.|.|.++.|+ +..+++++.|.+|-+||..+-++++++.- .+.+-++.+=++ |++++|++..
T Consensus 191 H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~--ye~~E~vv~l~~~~~~~~~~~~TaG~~--------- 259 (775)
T KOG0319|consen 191 HKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL--YESLESVVRLREELGGKGEYIITAGGS--------- 259 (775)
T ss_pred hhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech--hhheeeEEEechhcCCcceEEEEecCC---------
Confidence 56789999999 99999999999999999999999999876 446999999998 8899997743
Q ss_pred eeEEEEeEeccCCcC-----------------------------ccccee------------------------------
Q 011452 167 CRSTRIEYIRRGKPD-----------------------------AGFALF------------------------------ 187 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~-----------------------------~~~~lf------------------------------ 187 (485)
..+++|+...|++. +...+.
T Consensus 260 -g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~ 338 (775)
T KOG0319|consen 260 -GVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESH 338 (775)
T ss_pred -ceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccce
Confidence 37778877655541 000011
Q ss_pred -------------ee---------ccccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCCeEE------EEEcCCcEEE
Q 011452 188 -------------ES---------ESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTML------YSISDKNVQE 238 (485)
Q Consensus 188 -------------~~---------~~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g~~l------~tl~~~~V~~ 238 (485)
+. +|..-+.++. |+ .|-+|||||.|++++||.++++.+. .+.|.+.|-+
T Consensus 339 laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~--~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 339 LAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWS--SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGA 416 (775)
T ss_pred EEEEeCCCceEEEecCCCceEEEeCchhheeeeeecc--cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccce
Confidence 00 0111122333 43 6889999999999999999554432 3345678999
Q ss_pred EEEcC-CceEEEEEcCCCCeeEEEEecCCCeE-----EE----EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 239 IKISP-GIMLLIFTKASGHVPLKILSIEDGTV-----LK----SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 239 VafSp-g~~ll~sss~~~D~tIklWdi~tG~~-----L~----tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
|++|- +-..+++. +.|.|||+|++..-+. .. +-..|...+++|+.+ |.+..++++|.|+|.|||++.
T Consensus 417 va~~~~~asffvsv--S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia-~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 417 VAGSKLGASFFVSV--SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIA-PNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred eeecccCccEEEEe--cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEec-CCCceEEecccccceeeeccc
Confidence 99994 55555554 4569999999865221 12 223567778899986 545555667899999999999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
..++..+|.||.-.||+|.|+|..|++||+| |.|||||.++ ..|++||+||... |.-+.|-.+|+.|+|++.
T Consensus 494 ~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a-----Vlra~F~~~~~qliS~~a- 567 (775)
T KOG0319|consen 494 QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA-----VLRASFIRNGKQLISAGA- 567 (775)
T ss_pred CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce-----eEeeeeeeCCcEEEeccC-
Confidence 9999999999999999999999999999999 9999999996 9999999999976 999999999999999986
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
||-|||||+.|++|+.+|-+|+| .||+|+-+|
T Consensus 568 ----------dGliKlWnikt~eC~~tlD~H~D--------------------------------------rvWaL~~~~ 599 (775)
T KOG0319|consen 568 ----------DGLIKLWNIKTNECEMTLDAHND--------------------------------------RVWALSVSP 599 (775)
T ss_pred ----------CCcEEEEeccchhhhhhhhhccc--------------------------------------eeEEEeecC
Confidence 89999999999999999999985 899999999
Q ss_pred CCCEEEEecCCCcEEEcc
Q 011452 467 DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklWd 484 (485)
++.+++||+.||.|-+|.
T Consensus 600 ~~~~~~tgg~Dg~i~~wk 617 (775)
T KOG0319|consen 600 LLDMFVTGGGDGRIIFWK 617 (775)
T ss_pred ccceeEecCCCeEEEEee
Confidence 999999999999999994
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=270.39 Aligned_cols=276 Identities=17% Similarity=0.236 Sum_probs=237.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|.++|..+.++ +++|++++.||.+++|+..+++.+..+.. |...+.++.|+|+++.|++++. + +.+.
T Consensus 8 h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~----~------~~i~ 76 (289)
T cd00200 8 HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAASADGTYLASGSS----D------KTIR 76 (289)
T ss_pred cCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec-CCcceeEEEECCCCCEEEEEcC----C------CeEE
Confidence 45566666666 79999999999999999999988887776 7778999999999999998764 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~ 249 (485)
+|++..++... .+. .+...+..+.|+ ++++++++++.|+.+++||+.+++++..+.. ..|.+++|+|++.+++
T Consensus 77 i~~~~~~~~~~---~~~-~~~~~i~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 151 (289)
T cd00200 77 LWDLETGECVR---TLT-GHTSYVSSVAFS-PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVA 151 (289)
T ss_pred EEEcCcccceE---EEe-ccCCcEEEEEEc-CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEE
Confidence 99998765521 222 233356689997 6789999998899999999999998888864 4699999999766666
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
++. .|+.|++||+.+++++..+..|...+..++|. +++..+++++.|+.|++||+++++++..+..|...+.+++|+
T Consensus 152 ~~~--~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~ 228 (289)
T cd00200 152 SSS--QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFS-PDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228 (289)
T ss_pred EEc--CCCcEEEEEccccccceeEecCccccceEEEC-CCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEc
Confidence 644 35899999999999999999888889999997 667788888889999999999999999998999999999999
Q ss_pred CCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 330 YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 330 pdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|++.++++++ |++|++||+. ++++..+.+|... +.+++|+|+|++|++++. |++|++|+
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~l~~~~~-----------d~~i~iw~ 289 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS-----VTSLAWSPDGKRLASGSA-----------DGTIRIWD 289 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCc-----EEEEEECCCCCEEEEecC-----------CCeEEecC
Confidence 9999999999 9999999996 9999999988866 999999999999999986 79999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=292.26 Aligned_cols=281 Identities=10% Similarity=0.115 Sum_probs=236.7
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecc-----cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRE-----TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~-----tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL 165 (485)
|...|.+++.. -|+|.+++.|.++-+|++. .|...+-+.| |...|..++.+|||++..++|. |
T Consensus 14 h~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~G-HsH~v~dv~~s~dg~~alS~sw----D---- 84 (315)
T KOG0279|consen 14 HTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTG-HSHFVSDVVLSSDGNFALSASW----D---- 84 (315)
T ss_pred CCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeec-cceEecceEEccCCceEEeccc----c----
Confidence 44566666666 7999999999999999865 4778888888 9999999999999999999885 4
Q ss_pred ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKI 241 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~Vaf 241 (485)
+++++||+..|+. ...|.. |..-+-+|+|+ +|...|+|||.|+||||||.. |.|.|++.. ++|.+|.|
T Consensus 85 --~~lrlWDl~~g~~---t~~f~G-H~~dVlsva~s-~dn~qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WVscvrf 156 (315)
T KOG0279|consen 85 --GTLRLWDLATGES---TRRFVG-HTKDVLSVAFS-TDNRQIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWVSCVRF 156 (315)
T ss_pred --ceEEEEEecCCcE---EEEEEe-cCCceEEEEec-CCCceeecCCCcceeeeeeec-ccEEEEEecCCCcCcEEEEEE
Confidence 5999999999976 345653 66778899998 788899999999999999975 578888863 58999999
Q ss_pred cCC--ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC
Q 011452 242 SPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (485)
Q Consensus 242 Spg--~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh 319 (485)
||. .-+++++ +.|+|||+||+.+-++..+|.||++.+..|+++ |||..+++|+.|+.+-|||++.+++++.+ +|
T Consensus 157 sP~~~~p~Ivs~--s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vS-pDGslcasGgkdg~~~LwdL~~~k~lysl-~a 232 (315)
T KOG0279|consen 157 SPNESNPIIVSA--SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVS-PDGSLCASGGKDGEAMLWDLNEGKNLYSL-EA 232 (315)
T ss_pred cCCCCCcEEEEc--cCCceEEEEccCCcchhhccccccccEEEEEEC-CCCCEEecCCCCceEEEEEccCCceeEec-cC
Confidence 995 5666654 456999999999999999999999999999997 88999999999999999999999999998 68
Q ss_pred CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEee----cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE----DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~----gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
+..|.+++|+|+--.|+.+-+..|||||++ +.++.+|. |......+....++|||+||+.|.+|-.
T Consensus 233 ~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~t--------- 303 (315)
T KOG0279|consen 233 FDIVNSLCFSPNRYWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYT--------- 303 (315)
T ss_pred CCeEeeEEecCCceeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeec---------
Confidence 899999999999888877778889999997 87877664 2211111222469999999999999976
Q ss_pred CCCCeEEEEeCC
Q 011452 395 GNAGSINISNIL 406 (485)
Q Consensus 395 ~~DgtIklWdl~ 406 (485)
|+.|++|.+.
T Consensus 304 --d~~irv~qv~ 313 (315)
T KOG0279|consen 304 --DNVIRVWQVA 313 (315)
T ss_pred --CCcEEEEEee
Confidence 7999999874
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=331.05 Aligned_cols=275 Identities=14% Similarity=0.170 Sum_probs=233.6
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
|+-|+.. ....+.+..||+|+.+||.+= .| -.|++|.+..-++. +|-... . ..
T Consensus 370 c~YT~~n-t~~~v~ca~fSddssmlA~Gf----~d------S~i~~~Sl~p~kl~---~lk~~~------~-------l~ 422 (707)
T KOG0263|consen 370 CMYTFHN-TYQGVTCAEFSDDSSMLACGF----VD------SSVRVWSLTPKKLK---KLKDAS------D-------LS 422 (707)
T ss_pred EEEEEEE-cCCcceeEeecCCcchhhccc----cc------cEEEEEecchhhhc---cccchh------h-------hc
Confidence 3445544 345799999999999887733 33 48889997544441 111111 1 11
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
.+-..+.|-.+..-|........++ |..+|.++.|||+..+|.++|. |.|+|||++.|-.++-.++||..+||.|.
T Consensus 423 ~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSE--D~svRLWsl~t~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 423 NIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSE--DSSVRLWSLDTWSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred cccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccC--CcceeeeecccceeEEEecCCCcceeeEE
Confidence 2233455666777777766666666 4569999999999888888765 58999999999999999999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
|+ |.|-++|++|.|+|.+||...+-..++++.||...|.++.|.|+..++|||| |+||++||+. |..++.|.||...
T Consensus 501 F~-P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~ 579 (707)
T KOG0263|consen 501 FA-PRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP 579 (707)
T ss_pred ec-CCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc
Confidence 97 7899999999999999999999999999999999999999999999999999 9999999995 9999999999988
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.+|+|||+|.+||||+. ||.|+|||+.+|+.+..+.+|++
T Consensus 580 -----V~al~~Sp~Gr~LaSg~e-----------d~~I~iWDl~~~~~v~~l~~Ht~----------------------- 620 (707)
T KOG0263|consen 580 -----VTALAFSPCGRYLASGDE-----------DGLIKIWDLANGSLVKQLKGHTG----------------------- 620 (707)
T ss_pred -----eEEEEEcCCCceEeeccc-----------CCcEEEEEcCCCcchhhhhcccC-----------------------
Confidence 999999999999999987 79999999999999999999984
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|.||.||..||+|+.|.+|+|||.
T Consensus 621 ---------------ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 621 ---------------TIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred ---------------ceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 8999999999999999999999999984
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=319.17 Aligned_cols=238 Identities=19% Similarity=0.326 Sum_probs=211.8
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEec-CCCeE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTV 269 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi-~tG~~ 269 (485)
+-.+.|+ +||+.|++++.|+++++|++.+++ ++.++. ...|.+++|||++.++++++ .|++|||||+ +.|.+
T Consensus 162 v~~~~fs-~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s--~D~tiriwd~~~~~~~ 238 (456)
T KOG0266|consen 162 VTCVDFS-PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS--DDKTLRIWDLKDDGRN 238 (456)
T ss_pred eEEEEEc-CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec--CCceEEEeeccCCCeE
Confidence 4468998 799999999999999999998888 777774 45899999999887777654 4599999999 77799
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
+++|++|...+.+++|+ |++..+++++.|+||||||+++++|++.+.+|.+.|++++|++||++|++++ |++|+|||+
T Consensus 239 ~~~l~gH~~~v~~~~f~-p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~ 317 (456)
T KOG0266|consen 239 LKTLKGHSTYVTSVAFS-PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDL 317 (456)
T ss_pred EEEecCCCCceEEEEec-CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEEC
Confidence 99999999999999998 5568888899999999999999999999999999999999999999999999 999999999
Q ss_pred C-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 349 R-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 349 ~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
. |+ ++.++.++.... .++.+.|+|+|++|++++. |+++++||+..++++.++.+|.+.
T Consensus 318 ~~~~~~~~~~~~~~~~~~---~~~~~~fsp~~~~ll~~~~-----------d~~~~~w~l~~~~~~~~~~~~~~~----- 378 (456)
T KOG0266|consen 318 ETGSKLCLKLLSGAENSA---PVTSVQFSPNGKYLLSASL-----------DRTLKLWDLRSGKSVGTYTGHSNL----- 378 (456)
T ss_pred CCCceeeeecccCCCCCC---ceeEEEECCCCcEEEEecC-----------CCeEEEEEccCCcceeeecccCCc-----
Confidence 6 87 678998887542 2899999999999999987 799999999999999999999730
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+.+..++++|+.|+||+.|+.|++|+.
T Consensus 379 ---------~---------------------~~~~~~~~~~~~~~i~sg~~d~~v~~~~~ 408 (456)
T KOG0266|consen 379 ---------V---------------------RCIFSPTLSTGGKLIYSGSEDGSVYVWDS 408 (456)
T ss_pred ---------c---------------------eeEecccccCCCCeEEEEeCCceEEEEeC
Confidence 0 14566777999999999999999999984
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.77 Aligned_cols=279 Identities=13% Similarity=0.182 Sum_probs=236.6
Q ss_pred CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
=+||++++|.|||+|...||.|.+|++- ++..|+.+...||+..||.+.. ..|||+|+.+++++. ..
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh-~dsqVNrLeiTpdk~~LAaa~~-----------qhvRlyD~~S~np~P-v~ 77 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQH-PDSQVNRLEITPDKKDLAAAGN-----------QHVRLYDLNSNNPNP-VA 77 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEec-CccceeeEEEcCCcchhhhccC-----------CeeEEEEccCCCCCc-ee
Confidence 4799999999999999999999999975 8889999999999999998652 589999999998852 23
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 186 lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
.|+. +.+-+..|.|- .+|+.+.+||.|||+||||+..-.+...+. ...|++|.++|.+.-|+++ +.++-|++||+
T Consensus 78 t~e~-h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~--dqsg~irvWDl 153 (311)
T KOG0315|consen 78 TFEG-HTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISG--DQSGNIRVWDL 153 (311)
T ss_pred EEec-cCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEee--cCCCcEEEEEc
Confidence 4553 55778899996 799999999999999999999977766664 4689999999977766664 45589999999
Q ss_pred CCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe------eEEecccCCCceEEEEEcCCCcEEEE
Q 011452 265 EDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE------LTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 265 ~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~------~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
.+-.|-..+- .-.-.+.+++. .|||.+|++.-.-|+.-+|++-++. +++-++.|+..+....||||+++||+
T Consensus 154 ~~~~c~~~liPe~~~~i~sl~v-~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat 232 (311)
T KOG0315|consen 154 GENSCTHELIPEDDTSIQSLTV-MPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLAT 232 (311)
T ss_pred cCCccccccCCCCCcceeeEEE-cCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEe
Confidence 8765554442 22234556665 3788888888899999999998753 45557889999999999999999999
Q ss_pred Ee-CCcEEEEeCCC--cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 338 FR-NRTVAVWNFRG--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 338 ~s-D~TIklWd~~G--~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+| |.|+|||+.++ ++-..+++|+.| |+..+||.||+||++|+. |+++||||+.+||.++..
T Consensus 233 ~ssdktv~iwn~~~~~kle~~l~gh~rW-----vWdc~FS~dg~YlvTass-----------d~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 233 CSSDKTVKIWNTDDFFKLELVLTGHQRW-----VWDCAFSADGEYLVTASS-----------DHTARLWDLSAGKEVRQY 296 (311)
T ss_pred ecCCceEEEEecCCceeeEEEeecCCce-----EEeeeeccCccEEEecCC-----------CCceeecccccCceeeec
Confidence 99 99999999975 466789999999 999999999999999986 799999999999999999
Q ss_pred cCCC
Q 011452 415 RASN 418 (485)
Q Consensus 415 ~gH~ 418 (485)
.||.
T Consensus 297 ~gh~ 300 (311)
T KOG0315|consen 297 QGHH 300 (311)
T ss_pred CCcc
Confidence 9996
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=310.34 Aligned_cols=336 Identities=14% Similarity=0.152 Sum_probs=271.2
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
++|.+..|- -..||++-.+|...|+.+..=.+|+.|.- .+..|..++||.-|+.||.++. +.+++-+|
T Consensus 266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~---------klgQLlVw 335 (893)
T KOG0291|consen 266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCS---------KLGQLLVW 335 (893)
T ss_pred cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCC---------ccceEEEE
Confidence 778888888 78899999999999999998888998887 4568999999999999998763 23588899
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIF 250 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~s 250 (485)
+.+.... .+-+++|...+.+++++ |||+++|+|+.|+.|||||...|-|+.|+.. ..|..|.|+. |..++++
T Consensus 336 eWqsEsY----VlKQQgH~~~i~~l~YS-pDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 336 EWQSESY----VLKQQGHSDRITSLAYS-PDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred Eeeccce----eeeccccccceeeEEEC-CCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 9866654 22333566777789998 8999999999999999999999999999964 5899999995 6666554
Q ss_pred EcCCCCeeEEEEecCCCeEEEEeecCCccee-EEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 251 ss~~~D~tIklWdi~tG~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+.|+|||.||+..+.+-+||........ +|+- .|.|+.+.+|+ +--.|.+|+++||+++.+|.||.++|..++|
T Consensus 411 ---SLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav-D~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f 486 (893)
T KOG0291|consen 411 ---SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV-DPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSF 486 (893)
T ss_pred ---ecCCeEEeeeecccceeeeecCCCceeeeEEEE-cCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEE
Confidence 4679999999999999999986433333 4443 36688877775 6689999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 329 LYENQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+|++|||+| |+|||+||+ . ...+.+|+--. - |.+++|+|||+-||.+.- ||.|.+||+
T Consensus 487 ~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-d-----vl~vsfrPdG~elaVaTl-----------dgqItf~d~ 549 (893)
T KOG0291|consen 487 SPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-D-----VLAVSFRPDGKELAVATL-----------DGQITFFDI 549 (893)
T ss_pred ccccCeEEeccccceEEEEEeeccCceeeeEeecc-c-----eeEEEEcCCCCeEEEEEe-----------cceEEEEEh
Confidence 99999999999 999999998 3 44677776332 2 899999999999999997 799999999
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.+..+.+|.|-.+. .+.|.+.-..++=+..+. ...+++.||+||+.|.+|+..+.|.|++.
T Consensus 550 ~~~~q~~~IdgrkD~----~~gR~~~D~~ta~~sa~~--------------K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 550 KEAVQVGSIDGRKDL----SGGRKETDRITAENSAKG--------------KTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred hhceeeccccchhhc----cccccccceeehhhcccC--------------CceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 999999889885531 111111111111111111 37899999999999999999999999873
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=296.15 Aligned_cols=317 Identities=13% Similarity=0.127 Sum_probs=261.5
Q ss_pred ccccceEEEEEe--cC-EEEEEeCCCeEEeeecccCcEEEEe-------------ecCCcccEEEEEEeeCCCEEEEEEe
Q 011452 93 RKRSKIIEIVAA--RD-IVFALAQSGVCAAFCRETNQRICFL-------------NVTADEVIRSLFYNKNNDSLITVSV 156 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~-~ias~s~dgtiklW~~~tG~~l~tl-------------~g~~~~~i~sv~~spdg~~Las~S~ 156 (485)
+|.++|..-+.. .+ ++|+++.|-+.|+|++....-+++. ....+.-|.+|+||-+|..||+++.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 355555555554 45 9999999999999998741111110 1112346999999999999999774
Q ss_pred ecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--EEcCC
Q 011452 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDK 234 (485)
Q Consensus 157 d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~--tl~~~ 234 (485)
| +.++||+. .|.+. ..|.. |.+.+.++.++ -.|.+|+|++-|+|+-|||..+|+... +++..
T Consensus 256 ----~------G~~riw~~-~G~l~---~tl~~-HkgPI~slKWn-k~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~ 319 (524)
T KOG0273|consen 256 ----D------GEARIWNK-DGNLI---STLGQ-HKGPIFSLKWN-KKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSA 319 (524)
T ss_pred ----C------cEEEEEec-Cchhh---hhhhc-cCCceEEEEEc-CCCCEEEeccCCccEEEEeccCceEEEeeeeccC
Confidence 4 59999994 67662 23333 56778889997 699999999999999999999998654 45544
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~ 314 (485)
.-.+|.+-.+...+++ +.|+.|.|.-+..-.+.+||.||.+.|..+.|. |.+..|+++|+|+|+|||+...+.+.+
T Consensus 320 ~~lDVdW~~~~~F~ts---~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 320 PALDVDWQSNDEFATS---STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-PTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred CccceEEecCceEeec---CCCceEEEEEecCCCcceeeecccCceEEEEEC-CCCceEEEecCCCeeEeeecCCCcchh
Confidence 4356666666677665 345789999987778999999999999999996 567788888999999999999999999
Q ss_pred ecccCCCceEEEEEcCCC---------cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 315 VSRTEFMTPSAFIFLYEN---------QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 315 ~l~gh~~~v~avaFspdg---------~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
.|.+|...|+.+.+||+| ..+|+++ |.||++||+. |.++.+|.+|+.. |.+|+|||||+|||||
T Consensus 396 ~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~p-----VysvafS~~g~ylAsG 470 (524)
T KOG0273|consen 396 DLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEP-----VYSVAFSPNGRYLASG 470 (524)
T ss_pred hhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCc-----eEEEEecCCCcEEEec
Confidence 999999999999999965 4788888 9999999995 9999999999988 9999999999999999
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
+. ||-|.||++++|+.++.+.+.. .|..|.
T Consensus 471 s~-----------dg~V~iws~~~~~l~~s~~~~~---------------------------------------~Ifel~ 500 (524)
T KOG0273|consen 471 SL-----------DGCVHIWSTKTGKLVKSYQGTG---------------------------------------GIFELC 500 (524)
T ss_pred CC-----------CCeeEeccccchheeEeecCCC---------------------------------------eEEEEE
Confidence 98 7999999999999999998743 789999
Q ss_pred EcCCCCEEEEecCCCcEEEcc
Q 011452 464 YDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+|..|.-+-.|+.|.|=|
T Consensus 501 Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 501 WNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred EcCCCCEEEEEecCCCceEEE
Confidence 999999999888999998755
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=280.70 Aligned_cols=291 Identities=12% Similarity=0.156 Sum_probs=242.9
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCC
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN 148 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg 148 (485)
+|+....++.|..|++++...|+ +..|+|+|+||.+-+||.-|.+..+.+.- +..||...||+|.|
T Consensus 44 ~~~~rr~LkGH~~Ki~~~~ws~D-------------sr~ivSaSqDGklIvWDs~TtnK~haipl-~s~WVMtCA~sPSg 109 (343)
T KOG0286|consen 44 QMRTRRTLKGHLNKIYAMDWSTD-------------SRRIVSASQDGKLIVWDSFTTNKVHAIPL-PSSWVMTCAYSPSG 109 (343)
T ss_pred eeeeEEEecccccceeeeEecCC-------------cCeEEeeccCCeEEEEEcccccceeEEec-CceeEEEEEECCCC
Confidence 45555777788887777777777 89999999999999999999988888876 77899999999999
Q ss_pred CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe
Q 011452 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 149 ~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~ 226 (485)
+.+|.++. |+ .-.|+++...+-+...+.-.. +|.+++....|- +|+++| ++|.|.|+-+||+++|+
T Consensus 110 ~~VAcGGL---dN-------~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~-dD~~il-T~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 110 NFVACGGL---DN-------KCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFL-DDNHIL-TGSGDMTCALWDIETGQ 177 (343)
T ss_pred CeEEecCc---Cc-------eeEEEecccccccccceeeeeecCccceeEEEEEc-CCCceE-ecCCCceEEEEEcccce
Confidence 99998664 33 455666643322111111111 345666678895 577665 56779999999999999
Q ss_pred EEEEEcCC--cEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEE
Q 011452 227 MLYSISDK--NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (485)
Q Consensus 227 ~l~tl~~~--~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIk 303 (485)
.+..+++| .|.+++++| ++...++++ -|.+.||||+..|.+.++|.||..-|.+|.|. |+|.-+++|++|+|+|
T Consensus 178 ~~~~f~GH~gDV~slsl~p~~~ntFvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ff-P~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 178 QTQVFHGHTGDVMSLSLSPSDGNTFVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFF-PSGDAFATGSDDATCR 254 (343)
T ss_pred EEEEecCCcccEEEEecCCCCCCeEEecc--cccceeeeeccCcceeEeecccccccceEEEc-cCCCeeeecCCCceeE
Confidence 99999875 799999999 766666654 45899999999999999999999999999997 7899999999999999
Q ss_pred EEECCCCeeEEecccC--CCceEEEEEcCCCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 304 ILDVRNFELTEVSRTE--FMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh--~~~v~avaFspdg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
++|++..+.+.++... ...|++|+||--|++|..+. |.++-+||. .|+.+..|.||.+. |..|..||||--
T Consensus 255 lyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNR-----vScl~~s~DG~a 329 (343)
T KOG0286|consen 255 LYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENR-----VSCLGVSPDGMA 329 (343)
T ss_pred EEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCe-----eEEEEECCCCcE
Confidence 9999999888887543 34899999999999999998 999999998 69999999999988 999999999999
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 380 IISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+++||. |.++|||.
T Consensus 330 v~TgSW-----------Ds~lriW~ 343 (343)
T KOG0286|consen 330 VATGSW-----------DSTLRIWA 343 (343)
T ss_pred EEecch-----------hHheeecC
Confidence 999998 79999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=292.12 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=250.4
Q ss_pred eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEE
Q 011452 120 FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE 199 (485)
Q Consensus 120 W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~ 199 (485)
|... -++.+.++| |.++|+||++.|-++.++|+|+ | ++++|||+.+|++.. --.++..-+..|+
T Consensus 137 WHap-wKl~rVi~g-HlgWVr~vavdP~n~wf~tgs~----D------rtikIwDlatg~Lkl----tltGhi~~vr~va 200 (460)
T KOG0285|consen 137 WHAP-WKLYRVISG-HLGWVRSVAVDPGNEWFATGSA----D------RTIKIWDLATGQLKL----TLTGHIETVRGVA 200 (460)
T ss_pred ccCc-ceehhhhhh-ccceEEEEeeCCCceeEEecCC----C------ceeEEEEcccCeEEE----eecchhheeeeee
Confidence 5543 566777887 9999999999999999999774 5 799999999999832 1124555566899
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
|| +--.+|-|++.|++||-|||+..+.+...++| .|.+++..|-..++.+++ .|.++||||+.|...+.+|.||.
T Consensus 201 vS-~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 201 VS-KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred ec-ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCC
Confidence 98 67899999999999999999988888887775 899999999555555543 45899999999999999999999
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeC-CCcEEEEe
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF-RGELVTSF 356 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~-~G~ll~tl 356 (485)
..|.+|.|- |.+.+++++|.|.|||+||++.|+...++..|...|.+++..|.-.+|||++-..||-|++ +|+.++.|
T Consensus 278 ~~V~~V~~~-~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 278 NPVASVMCQ-PTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEGEFLQNL 356 (460)
T ss_pred CcceeEEee-cCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCccchhhcc
Confidence 999999996 5677999999999999999999999999999999999999999999999999556999999 59999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.+|..- ++.++...|| ++++|++ .|+|-.||.++|-+-+.++.--. +.|
T Consensus 357 sgh~~i-----intl~~nsD~-v~~~G~d-----------ng~~~fwdwksg~nyQ~~~t~vq-------pGS------- 405 (460)
T KOG0285|consen 357 SGHNAI-----INTLSVNSDG-VLVSGGD-----------NGSIMFWDWKSGHNYQRGQTIVQ-------PGS------- 405 (460)
T ss_pred ccccce-----eeeeeeccCc-eEEEcCC-----------ceEEEEEecCcCccccccccccc-------CCc-------
Confidence 999876 9999999997 5666764 69999999999876665532110 000
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
...| ..|++-+|+..|..|+||..|++||+|.
T Consensus 406 --------------l~sE--agI~as~fDktg~rlit~eadKtIk~~k 437 (460)
T KOG0285|consen 406 --------------LESE--AGIFASCFDKTGSRLITGEADKTIKMYK 437 (460)
T ss_pred --------------cccc--cceeEEeecccCceEEeccCCcceEEEe
Confidence 0011 3899999999999999999999999994
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=312.48 Aligned_cols=278 Identities=11% Similarity=0.117 Sum_probs=226.4
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeeccc----Cc----EEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCC
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRET----NQ----RICFLNVTADEVIRSLFYNKN-NDSLITVSVYASD 160 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t----G~----~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~ 160 (485)
+.+.+.|.+|.|+ +++||+++.|++|++|+..+ +. .+..+. +...|.+++|+|. +..||+++.
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~las~~~---- 553 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA--SRSKLSGICWNSYIKSQVASSNF---- 553 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec--ccCceeeEEeccCCCCEEEEEeC----
Confidence 3478889999999 99999999999999999753 21 223333 3457999999875 778888663
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEE
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEI 239 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~V 239 (485)
| ++++|||+.+++.. ..+. +|...+..|+|++++|.+|++|+.|++|+|||+.+++++.++.. ..|.++
T Consensus 554 D------g~v~lWd~~~~~~~---~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v 623 (793)
T PLN00181 554 E------GVVQVWDVARSQLV---TEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV 623 (793)
T ss_pred C------CeEEEEECCCCeEE---EEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE
Confidence 4 59999999888762 2232 35566789999866899999999999999999999999888864 579999
Q ss_pred EEc-CCceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC------Ce
Q 011452 240 KIS-PGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN------FE 311 (485)
Q Consensus 240 afS-pg~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t------g~ 311 (485)
+|+ +++.++++++ .|++|++||+.+++ .+.++.+|...+..|.|. ++..|++++.|++|+|||+.. ..
T Consensus 624 ~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~~~~ 699 (793)
T PLN00181 624 QFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGINET 699 (793)
T ss_pred EEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCccccCCc
Confidence 996 5555555544 45899999998876 578899999999999995 478899999999999999985 36
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe-------------ecCCCCCCCCCeeEEEECCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-------------EDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl-------------~gH~~~~~~~~v~svafSpD 376 (485)
++..+.+|...++.++|+|++++||+++ |++|+||+.. +..+.++ .+|..+ |++++|+|+
T Consensus 700 ~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-----V~~v~ws~~ 774 (793)
T PLN00181 700 PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQF-----ISSVCWRGQ 774 (793)
T ss_pred ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcE-----EEEEEEcCC
Confidence 7888999999999999999999999999 9999999985 5444332 223323 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
|++|++|+. ||+|+||++
T Consensus 775 ~~~lva~~~-----------dG~I~i~~~ 792 (793)
T PLN00181 775 SSTLVAANS-----------TGNIKILEM 792 (793)
T ss_pred CCeEEEecC-----------CCcEEEEec
Confidence 999999986 799999996
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=309.89 Aligned_cols=330 Identities=12% Similarity=0.105 Sum_probs=247.7
Q ss_pred cccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 86 SMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 86 ~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
..+-.+.+....|.+..|+ +.+||.|-.|..|++|.+. .+.|+.|....+ . . .+=+.|+|-
T Consensus 369 ic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~-p~kl~~lk~~~~-l-~---------~~d~~sad~----- 431 (707)
T KOG0263|consen 369 ICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLT-PKKLKKLKDASD-L-S---------NIDTESADV----- 431 (707)
T ss_pred EEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecc-hhhhccccchhh-h-c---------cccccccch-----
Confidence 3334666778889999999 7899999999999999977 556666665222 1 1 111112111
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKI 241 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~Vaf 241 (485)
...+.|-..+-. ...|. +|.+.+..+.|+ |+.++|+|||.|+|||||.+.+-.++-...+ .+||.|.|
T Consensus 432 -----~~~~~D~~~~~~--~~~L~--GH~GPVyg~sFs-Pd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F 501 (707)
T KOG0263|consen 432 -----DVDMLDDDSSGT--SRTLY--GHSGPVYGCSFS-PDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQF 501 (707)
T ss_pred -----hhhhccccCCce--eEEee--cCCCceeeeeec-ccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEe
Confidence 011112111110 01133 345677789998 7999999999999999999999988765554 58999999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
+|-|...+++ +.|+|.+||+...-+.|+.|.||+.-+..|.|. |...++++||.|+|||+||+.+|..++.+.||..
T Consensus 502 ~P~GyYFata--s~D~tArLWs~d~~~PlRifaghlsDV~cv~FH-PNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~ 578 (707)
T KOG0263|consen 502 APRGYYFATA--SHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFH-PNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKG 578 (707)
T ss_pred cCCceEEEec--CCCceeeeeecccCCchhhhcccccccceEEEC-CcccccccCCCCceEEEEEcCCCcEEEEecCCCC
Confidence 9966665554 456999999999999999999999999999998 5567888899999999999999999999999999
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+|.+++|||+|++||||+ |+.|+|||+. |+++..|.+|.+- |.+|.||.||..||||+. |++
T Consensus 579 ~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t-----i~SlsFS~dg~vLasgg~-----------Dns 642 (707)
T KOG0263|consen 579 PVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT-----IYSLSFSRDGNVLASGGA-----------DNS 642 (707)
T ss_pred ceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc-----eeEEEEecCCCEEEecCC-----------CCe
Confidence 999999999999999999 9999999996 9999999999766 999999999999999987 799
Q ss_pred EEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 400 INISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 400 IklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
|+|||+..-.+.- ..+|-. ...-+.+.++.....+...+-+|.. .|..|-|.--.-.|+.|.
T Consensus 643 V~lWD~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~llgs~~tK~t-----------pv~~l~FtrrNl~L~~g~ 704 (707)
T KOG0263|consen 643 VRLWDLTKVIELL-NLGHIS--TSNSAITQENNASSLLLGSFYTKNT-----------PVVGLHFTRRNLLLAVGP 704 (707)
T ss_pred EEEEEchhhcccc-cccccc--cccccccccCCCCcceeeeeeecCc-----------eEEEEEEeccceeEEecc
Confidence 9999997644441 113321 1112233333333334434433333 888999987666666654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=298.83 Aligned_cols=225 Identities=16% Similarity=0.284 Sum_probs=184.2
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
|.+.+-.+.|+ .++|+|||.|.||+|||++||+++.++- .+.|..+.|+.|.|+ ++ +.|.+|.+||+..-.
T Consensus 236 HtGSVLCLqyd---~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mv--tc--SkDrsiaVWdm~sps 308 (499)
T KOG0281|consen 236 HTGSVLCLQYD---ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMV--TC--SKDRSIAVWDMASPT 308 (499)
T ss_pred CCCcEEeeecc---ceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEE--Ee--cCCceeEEEeccCch
Confidence 34444456664 4688999999999999999999888873 468889999877653 32 345899999876543
Q ss_pred ---EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 269 ---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 269 ---~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+.+.|.||...|..|+|. +.+++++|.|.|||+|++.|+++++++.||.-.|-++ -+.|++++||| |.||+
T Consensus 309 ~it~rrVLvGHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDntIR 383 (499)
T KOG0281|consen 309 DITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNTIR 383 (499)
T ss_pred HHHHHHHHhhhhhheeeeccc---cceEEEecCCceEEEEeccceeeehhhhcccccceeh--hccCeEEEecCCCceEE
Confidence 335677999999999985 4577778999999999999999999999999777554 78999999999 99999
Q ss_pred EEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe---------EEEEe
Q 011452 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK---------CLAKI 414 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk---------~l~tl 414 (485)
|||.+ |.|++.|+||..- |+.|.| |.+.|+||.. ||+||+||+.++. |+.++
T Consensus 384 lwdi~~G~cLRvLeGHEeL-----vRciRF--d~krIVSGaY-----------DGkikvWdl~aaldpra~~~~~Cl~~l 445 (499)
T KOG0281|consen 384 LWDIECGACLRVLEGHEEL-----VRCIRF--DNKRIVSGAY-----------DGKIKVWDLQAALDPRAPASTLCLRTL 445 (499)
T ss_pred EEeccccHHHHHHhchHHh-----hhheee--cCceeeeccc-----------cceEEEEecccccCCcccccchHHHhh
Confidence 99997 9999999999987 899998 6789999987 7999999998764 33344
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|+ +.|..|.|+ -..|+|.+.|.||-+||.
T Consensus 446 v~hs--------------------------------------gRVFrLQFD--~fqIvsssHddtILiWdF 476 (499)
T KOG0281|consen 446 VEHS--------------------------------------GRVFRLQFD--EFQIISSSHDDTILIWDF 476 (499)
T ss_pred hhcc--------------------------------------ceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence 4433 489999995 478999999999999983
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=290.83 Aligned_cols=283 Identities=13% Similarity=0.188 Sum_probs=237.4
Q ss_pred eecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEecc--CCcCcccceeee---------ccccCceEE
Q 011452 131 LNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRR--GKPDAGFALFES---------ESLKWPGFV 198 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~--G~~~~~~~lf~~---------~~~~~~~~V 198 (485)
+.. |...|.+-+|||--+ .|++++ .+ -+.++|++.. +... .+..|.+ ...+-+..+
T Consensus 174 vl~-~~~~V~~~~WnP~~~~llasg~----~~------s~ari~~l~e~~~~~~-~q~~lrh~~~~~~~s~~~nkdVT~L 241 (524)
T KOG0273|consen 174 VLR-HESEVFICAWNPLRDGLLASGS----GD------STARIWNLLENSNIGS-TQLVLRHCIREGGKSVPSNKDVTSL 241 (524)
T ss_pred ecc-CCCceEEEecCchhhhhhhccC----Cc------cceeeeeehhhccccc-hhhhhhhhhhhhcccCCccCCcceE
Confidence 444 788899999999988 777654 34 4888998854 1110 0112222 112345589
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
+++ .+|..||+|+.||.+|+|+ .+|.++.+|.. .+|.+++++..+..+.++ +-|+|+-|||..+|++-+.|..|
T Consensus 242 ~Wn-~~G~~LatG~~~G~~riw~-~~G~l~~tl~~HkgPI~slKWnk~G~yilS~--~vD~ttilwd~~~g~~~q~f~~~ 317 (524)
T KOG0273|consen 242 DWN-NDGTLLATGSEDGEARIWN-KDGNLISTLGQHKGPIFSLKWNKKGTYILSG--GVDGTTILWDAHTGTVKQQFEFH 317 (524)
T ss_pred Eec-CCCCeEEEeecCcEEEEEe-cCchhhhhhhccCCceEEEEEcCCCCEEEec--cCCccEEEEeccCceEEEeeeec
Confidence 997 6999999999999999999 47888888864 589999999644444443 45689999999999999999988
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC-CCcEEE
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF-RGELVT 354 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~-~G~ll~ 354 (485)
...--.|.|. ++..+++++-|+.|+++-+.-..+..++.||.+.|+++-|.|.|.+|+|+| |+|+|||+. ++.++.
T Consensus 318 s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~ 395 (524)
T KOG0273|consen 318 SAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVH 395 (524)
T ss_pred cCCccceEEe--cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchh
Confidence 7776678884 478899999999999999999999999999999999999999999999999 999999998 599999
Q ss_pred EeecCCCCCCCCCeeEEEECCC---------CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 355 SFEDHLLWHPDCNTNNIYITSD---------QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpD---------G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
.|.+|.-. |..+.+||+ |..|++++. |+||++||+..|+|+++|..|+
T Consensus 396 ~l~~Hske-----i~t~~wsp~g~v~~n~~~~~~l~sas~-----------dstV~lwdv~~gv~i~~f~kH~------- 452 (524)
T KOG0273|consen 396 DLQAHSKE-----IYTIKWSPTGPVTSNPNMNLMLASASF-----------DSTVKLWDVESGVPIHTLMKHQ------- 452 (524)
T ss_pred hhhhhccc-----eeeEeecCCCCccCCCcCCceEEEeec-----------CCeEEEEEccCCceeEeeccCC-------
Confidence 99999866 889999996 468888887 7999999999999999999998
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|++|+|||||++|||||.||-|++|+.
T Consensus 453 -------------------------------~pVysvafS~~g~ylAsGs~dg~V~iws~ 481 (524)
T KOG0273|consen 453 -------------------------------EPVYSVAFSPNGRYLASGSLDGCVHIWST 481 (524)
T ss_pred -------------------------------CceEEEEecCCCcEEEecCCCCeeEeccc
Confidence 39999999999999999999999999973
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=300.50 Aligned_cols=278 Identities=14% Similarity=0.195 Sum_probs=230.7
Q ss_pred cceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE-eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 96 s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t-l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
..|..-.+..+.+++++.|+|+++|+..+|+.+.+ +.| |.+.||+++|..-++.|+++|. | +|+++||
T Consensus 209 ~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~~l~G-H~g~V~~l~~~~~~~~lvsgS~----D------~t~rvWd 277 (537)
T KOG0274|consen 209 HVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILTRLVG-HFGGVWGLAFPSGGDKLVSGST----D------KTERVWD 277 (537)
T ss_pred chhhhheeecCeEEecCCCceeEEeecccceEEEeeccC-CCCCceeEEEecCCCEEEEEec----C------CcEEeEe
Confidence 33444444568999999999999999999999998 888 9999999999987889999774 4 6999999
Q ss_pred eccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc
Q 011452 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss 252 (485)
..+|++.. .|. +|...|.-..-.+.++++||.|.|||||++.++.++.++. ...|++|.+. +.+++++ +
T Consensus 278 ~~sg~C~~---~l~----gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-~~~lvsg-s 348 (537)
T KOG0274|consen 278 CSTGECTH---SLQ----GHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-EPLLVSG-S 348 (537)
T ss_pred cCCCcEEE---Eec----CCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-CCEEEEE-e
Confidence 99999832 333 2333332112356788999999999999999999999986 4689999999 5555544 3
Q ss_pred CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcC
Q 011452 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLY 330 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFsp 330 (485)
.|++|++||+.+|+||++|+||.++|.++.|. + ..+++|+.|++||+||+++. +|+.++.+|...|..+ ..
T Consensus 349 --~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~---~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~ 421 (537)
T KOG0274|consen 349 --YDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVD---SENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LL 421 (537)
T ss_pred --cCceEEEEEhhhceeeeeecCCcceEEEEEec---CcceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--cc
Confidence 44799999999999999999999999999764 4 78999999999999999999 9999999999988665 55
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
.++.|+|++ |++||+||.+ |++++++++ |... |..+++. -..+++++. |++++|||+.+
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~-----v~~l~~~--~~~il~s~~-----------~~~~~l~dl~~ 483 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG-----VSALALG--KEEILCSSD-----------DGSVKLWDLRS 483 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCccc-----EEEeecC--cceEEEEec-----------CCeeEEEeccc
Confidence 788899999 9999999996 999999999 4443 7777776 356666665 79999999999
Q ss_pred CeEEEEecCCC
Q 011452 408 GKCLAKIRASN 418 (485)
Q Consensus 408 Gk~l~tl~gH~ 418 (485)
|++..++-.++
T Consensus 484 ~~~~~~l~~~~ 494 (537)
T KOG0274|consen 484 GTLIRTLLSTD 494 (537)
T ss_pred Cchhhhhhhcc
Confidence 99999886655
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=298.86 Aligned_cols=270 Identities=18% Similarity=0.247 Sum_probs=227.2
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce-eeeccccCceEEEEeCCCCeEEEEe
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL-FESESLKWPGFVEFDDVNGKVLTYS 211 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l-f~~~~~~~~~~V~Fs~pnG~~Las~ 211 (485)
+.++..+.+..|. + ..+++++ ++ +++.+|+...|+... . +. +|.+-++.++|. .-+.+|.+|
T Consensus 205 ~~~~~~~~~~q~~-~-~~~~~~s----~~------~tl~~~~~~~~~~i~---~~l~-GH~g~V~~l~~~-~~~~~lvsg 267 (537)
T KOG0274|consen 205 GTDDHVVLCLQLH-D-GFFKSGS----DD------STLHLWDLNNGYLIL---TRLV-GHFGGVWGLAFP-SGGDKLVSG 267 (537)
T ss_pred ccCcchhhhheee-c-CeEEecC----CC------ceeEEeecccceEEE---eecc-CCCCCceeEEEe-cCCCEEEEE
Confidence 3466778888888 3 4566644 55 788999998888622 1 22 466778899995 357899999
Q ss_pred eCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 212 AQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 212 s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
|.|.|+||||+.+|+|.+++.++ .|.++.+-+. ++++ ++.|.|||+|++++|++|+++.+|...|.+|...
T Consensus 268 S~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~~--~~~s--gs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--- 340 (537)
T KOG0274|consen 268 STDKTERVWDCSTGECTHSLQGHTSSVRCLTIDPF--LLVS--GSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--- 340 (537)
T ss_pred ecCCcEEeEecCCCcEEEEecCCCceEEEEEccCc--eEee--ccCCceEEEEeccCcceEEEeccccccEEEEEec---
Confidence 99999999999999999999764 5777776553 3344 3467999999999999999999999999999975
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C-cEEEEeecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G-~ll~tl~gH~~~~~~~ 366 (485)
+..+++++.|++|++||+.+++|+.++.||..+|.+++|.+. +.++||+ |++||+||++ + +|+.+|.+|..-
T Consensus 341 ~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~---- 415 (537)
T KOG0274|consen 341 EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL---- 415 (537)
T ss_pred CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc----
Confidence 678899999999999999999999999999999999988777 8899999 9999999997 6 799999999976
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
|..+. ..+++|+|++. |++||+||+.+|+|+.++.+ |.
T Consensus 416 -v~~l~--~~~~~Lvs~~a-----------D~~Ik~WD~~~~~~~~~~~~~~~--------------------------- 454 (537)
T KOG0274|consen 416 -VSSLL--LRDNFLVSSSA-----------DGTIKLWDAEEGECLRTLEGRHV--------------------------- 454 (537)
T ss_pred -ccccc--cccceeEeccc-----------cccEEEeecccCceeeeeccCCc---------------------------
Confidence 65554 46789999987 79999999999999999999 43
Q ss_pred cccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 446 SRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|+++++. -.++++++.|++|++||+
T Consensus 455 -----------~~v~~l~~~--~~~il~s~~~~~~~l~dl 481 (537)
T KOG0274|consen 455 -----------GGVSALALG--KEEILCSSDDGSVKLWDL 481 (537)
T ss_pred -----------ccEEEeecC--cceEEEEecCCeeEEEec
Confidence 278888887 578999999999999985
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=266.76 Aligned_cols=284 Identities=14% Similarity=0.173 Sum_probs=220.5
Q ss_pred EEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC
Q 011452 127 RICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG 205 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG 205 (485)
.+.++.+ |.+.||+++++|- |..|||+| .| +.++||+...|.--.-.......|.+.+.+|+|+ |.|
T Consensus 6 ~~~~~~g-h~~r~W~~awhp~~g~ilAscg----~D------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-p~g 73 (312)
T KOG0645|consen 6 LEQKLSG-HKDRVWSVAWHPGKGVILASCG----TD------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-PHG 73 (312)
T ss_pred eEEeecC-CCCcEEEEEeccCCceEEEeec----CC------ceEEEEecCCCCcEEEEEeccccchheeeeeeec-CCC
Confidence 3456777 7779999999998 88898866 45 7999999644432110111112466778899998 899
Q ss_pred eEEEEeeCCCcEEEeecCCC--eEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC---eEEEEeecCCc
Q 011452 206 KVLTYSAQDSIYKVFDLKNY--TMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG---TVLKSFNHLLH 278 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g--~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG---~~L~tl~~~~~ 278 (485)
++||++|.|.|+-||.-..+ +|+.+|.+ +.|-+|+||++|.+|++++. |+.|=||.+..+ +|+..|+.|++
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSR--DKSVWiWe~deddEfec~aVL~~Htq 151 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSR--DKSVWIWEIDEDDEFECIAVLQEHTQ 151 (312)
T ss_pred cEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeC--CCeEEEEEecCCCcEEEEeeeccccc
Confidence 99999999999999986644 48888875 58999999986666666554 489999988644 46789999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEE
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~ 354 (485)
-|+-|.|. |..+.|+++|+|+|||+|.-. .-+|.+++.+|..+|++++|.|.|+.|+|++ |+||+||-.. .
T Consensus 152 DVK~V~WH-Pt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~----~ 226 (312)
T KOG0645|consen 152 DVKHVIWH-PTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY----T 226 (312)
T ss_pred cccEEEEc-CCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec----c
Confidence 99999998 556788888999999999866 3479999999999999999999999999999 9999999854 2
Q ss_pred Eeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC------eEEEE-ecCCCCCCCCccc
Q 011452 355 SFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG------KCLAK-IRASNGLPAENEC 426 (485)
Q Consensus 355 tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG------k~l~t-l~gH~~~~~~~~~ 426 (485)
++.+ |... ++.|++- ...|||++. |+.|+|+.-..+ +.+.+ -.+|.
T Consensus 227 ~~~~~~sr~-----~Y~v~W~--~~~IaS~gg-----------D~~i~lf~~s~~~d~p~~~l~~~~~~aHe-------- 280 (312)
T KOG0645|consen 227 DLSGMHSRA-----LYDVPWD--NGVIASGGG-----------DDAIRLFKESDSPDEPSWNLLAKKEGAHE-------- 280 (312)
T ss_pred Ccchhcccc-----eEeeeec--ccceEeccC-----------CCEEEEEEecCCCCCchHHHHHhhhcccc--------
Confidence 2322 3323 7788887 458999987 799999965421 01111 11222
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC-CCEEEEecCCCcEEEccC
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED-RNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-g~~LaSgs~DgtVklWd~ 485 (485)
..|++|.|+|. +..|+||+.||+|++|.+
T Consensus 281 ------------------------------~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l 310 (312)
T KOG0645|consen 281 ------------------------------VDVNSVQWNPKVSNRLASGGDDGIVNFWEL 310 (312)
T ss_pred ------------------------------cccceEEEcCCCCCceeecCCCceEEEEEe
Confidence 38999999995 889999999999999974
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=291.10 Aligned_cols=272 Identities=15% Similarity=0.137 Sum_probs=228.3
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEee
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSA 212 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~s 212 (485)
.-+|..|-|.|+|..|+++|..| ...||.. .. -.|++ +|-..+..++++ +||..++||+
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SG----------EFtLWNg---~~----fnFEtilQaHDs~Vr~m~ws-~~g~wmiSgD 157 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSG----------EFTLWNG---TS----FNFETILQAHDSPVRTMKWS-HNGTWMISGD 157 (464)
T ss_pred ccceeeEEEcCCCceeEeecccc----------cEEEecC---ce----eeHHHHhhhhcccceeEEEc-cCCCEEEEcC
Confidence 34799999999999999988543 6778873 21 01222 344456789998 7999999999
Q ss_pred CCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 213 QDSIYKVFDLKNYTMLYSI---SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl---~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
.|+.||+|+.. -+.++.+ +...|+++|||| |.+++++ ++|++|||||..-.+.-..|.||.--+++|+|. |
T Consensus 158 ~gG~iKyWqpn-mnnVk~~~ahh~eaIRdlafSpnDskF~t~---SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWH-P 232 (464)
T KOG0284|consen 158 KGGMIKYWQPN-MNNVKIIQAHHAEAIRDLAFSPNDSKFLTC---SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWH-P 232 (464)
T ss_pred CCceEEecccc-hhhhHHhhHhhhhhhheeccCCCCceeEEe---cCCCeEEEEeccCCchhheeccCCCCcceeccC-C
Confidence 99999999964 2333333 346899999998 7777765 456899999999999999999998889999998 4
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
.-+.++++|.|.+||+||.++|+|+.++.+|...|.++.|+|++.+|+|+| |.++|+.|++ =+.+.++.+|...
T Consensus 233 ~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd---- 308 (464)
T KOG0284|consen 233 TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD---- 308 (464)
T ss_pred ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh----
Confidence 567788889999999999999999999999999999999999999999999 9999999998 7789999999977
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec-CCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR-ASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|++++++| .-.++.||+. ||.|..|.+..-+.+..+. +|.
T Consensus 309 -v~~~~WhP~~~~lftsgg~-----------Dgsvvh~~v~~~~p~~~i~~AHd-------------------------- 350 (464)
T KOG0284|consen 309 -VTSLTWHPLNESLFTSGGS-----------DGSVVHWVVGLEEPLGEIPPAHD-------------------------- 350 (464)
T ss_pred -heeeccccccccceeeccC-----------CCceEEEeccccccccCCCcccc--------------------------
Confidence 99999999 4567777775 8999999998556665553 343
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..||+|+|+|=|++|+|||.|.+||.|.
T Consensus 351 ------------~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 351 ------------GEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred ------------cceeeeeccccceeEeecCCCcceeeec
Confidence 3899999999999999999999999994
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=270.61 Aligned_cols=286 Identities=13% Similarity=0.148 Sum_probs=242.5
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
+-.+.+ |.+.|+.+.|+|+|..+||++ .| |.|-||.+ .|.+.....+- +|.+.+-.|.|. .||..
T Consensus 40 ~m~l~g-h~geI~~~~F~P~gs~~aSgG----~D------r~I~LWnv-~gdceN~~~lk--gHsgAVM~l~~~-~d~s~ 104 (338)
T KOG0265|consen 40 IMLLPG-HKGEIYTIKFHPDGSCFASGG----SD------RAIVLWNV-YGDCENFWVLK--GHSGAVMELHGM-RDGSH 104 (338)
T ss_pred hhhcCC-CcceEEEEEECCCCCeEeecC----Cc------ceEEEEec-cccccceeeec--cccceeEeeeec-cCCCE
Confidence 333555 888999999999999999854 56 89999995 67765422222 345666678997 79999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
|.|+|.|++++.||+++|++++.+.+ .-|+++.-+. |..++.+++ .|+|+||||+.+-++++++.. .-.+.+|.
T Consensus 105 i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgs--dD~t~kl~D~R~k~~~~t~~~-kyqltAv~ 181 (338)
T KOG0265|consen 105 ILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGS--DDGTLKLWDIRKKEAIKTFEN-KYQLTAVG 181 (338)
T ss_pred EEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecC--CCceEEEEeecccchhhcccc-ceeEEEEE
Confidence 99999999999999999999988764 4688988664 777777654 569999999999999999952 14677999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC----Cc-EEEEeec
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GE-LVTSFED 358 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----G~-ll~tl~g 358 (485)
|. +..++..+++-|+.||+||++.++++.++.||.+.|..+..+|+|..++|-+ |.|+++||++ ++ ||..|+|
T Consensus 182 f~-d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g 260 (338)
T KOG0265|consen 182 FK-DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG 260 (338)
T ss_pred ec-ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec
Confidence 96 6788999999999999999999999999999999999999999999999999 9999999983 44 6999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|..-- .-+....++||++..+..|+. |..+.+||..+-.++.+|.||..
T Consensus 261 ~~hnf-eknlL~cswsp~~~~i~ags~-----------dr~vyvwd~~~r~~lyklpGh~g------------------- 309 (338)
T KOG0265|consen 261 HIHNF-EKNLLKCSWSPNGTKITAGSA-----------DRFVYVWDTTSRRILYKLPGHYG------------------- 309 (338)
T ss_pred chhhh-hhhcceeeccCCCCccccccc-----------cceEEEeecccccEEEEcCCcce-------------------
Confidence 87521 112457899999999999886 79999999888899999999983
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.|..++|+|.-.+|.|++.|++|.|
T Consensus 310 -------------------svn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 310 -------------------SVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred -------------------eEEEeeecCCCcEEEEeccCceeEe
Confidence 8999999999999999999999976
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=291.29 Aligned_cols=226 Identities=17% Similarity=0.304 Sum_probs=194.7
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG 267 (485)
+..+-+..+.+| | ..++||..|+||||||.++..|++.|.+ ..|.++.|.. ++++++ ++|.||++||++||
T Consensus 195 e~skgVYClQYD--D-~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~--rviisG--SSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 195 ENSKGVYCLQYD--D-EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE--RVIVSG--SSDSTVRVWDVNTG 267 (499)
T ss_pred ccCCceEEEEec--c-hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc--eEEEec--CCCceEEEEeccCC
Confidence 445556678886 3 4579999999999999999999998876 4798888864 355654 45589999999999
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
++|+++-||...|..+.|+ +++++++|.|.+|.+||+..- .|.++|.||-..|+.|-|+ .++++|+| |+||
T Consensus 268 e~l~tlihHceaVLhlrf~---ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFS---NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred chhhHHhhhcceeEEEEEe---CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 9999999999999999997 689999999999999999865 3678899999999999775 55999999 9999
Q ss_pred EEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011452 344 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPA 422 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~ 422 (485)
|+|+.+ ++++++|.||.-. + .+.--.|++++|||. |.||||||+..|+||..|+||+.
T Consensus 343 kvW~~st~efvRtl~gHkRG-----I--AClQYr~rlvVSGSS-----------DntIRlwdi~~G~cLRvLeGHEe--- 401 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLNGHKRG-----I--ACLQYRDRLVVSGSS-----------DNTIRLWDIECGACLRVLEGHEE--- 401 (499)
T ss_pred EEEeccceeeehhhhccccc-----c--eehhccCeEEEecCC-----------CceEEEEeccccHHHHHHhchHH---
Confidence 999996 9999999999743 3 233458999999986 89999999999999999999983
Q ss_pred CcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 423 ENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-|.++-|+ .+.|+||..||+|||||+
T Consensus 402 -----------------------------------LvRciRFd--~krIVSGaYDGkikvWdl 427 (499)
T KOG0281|consen 402 -----------------------------------LVRCIRFD--NKRIVSGAYDGKIKVWDL 427 (499)
T ss_pred -----------------------------------hhhheeec--CceeeeccccceEEEEec
Confidence 78899995 578999999999999984
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=275.75 Aligned_cols=357 Identities=14% Similarity=0.166 Sum_probs=266.5
Q ss_pred ccccchhhhhhhcccccccCccc--------ccchhHHHhhhccc------cccc-cccCCCCcccccccccccccceEE
Q 011452 36 DGFVNSVKKLQRREISSKRDRAF--------TMTDAQERFRNIRL------QEEY-DTHDPKGHCSMVLPFLRKRSKIIE 100 (485)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l------~~~~-~~~~~~~~~~~~~~~~~~~s~V~~ 100 (485)
.+..+.|.||-+-|=+....+.| -.+.-.|--+.-++ .-|| .-+.+|.. +..+.|...|-+
T Consensus 35 ~gLs~ivN~ll~se~~~~K~~pFDFLi~gelLRtsL~e~l~~kgiSsE~~leIEYv~~~~aP~p----l~~~~hdDWVSs 110 (423)
T KOG0313|consen 35 YGLSNIVNKLLKSENGFWKPVPFDFLIKGELLRTSLDEHLEEKGISSEEILEIEYVEAITAPKP----LQCFLHDDWVSS 110 (423)
T ss_pred ccHHHHHHHHHhccCCcCCCCcceEEEcceeeeccHHHHHHHcCcChhheeEEEEEEecCCCCc----cccccchhhhhh
Confidence 34556777888877665555544 22233333333332 2233 33444432 222347789999
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCE---EEEEEeecCCCCcccceeEEEEeEecc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS---LITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~---Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
|..+++.|+++++||++++|++. |+++.++.| |.++|.++++-.-++. ++++| .| ++++||-+..
T Consensus 111 v~~~~~~IltgsYDg~~riWd~~-Gk~~~~~~G-ht~~ik~v~~v~~n~~~~~fvsas----~D------qtl~Lw~~~~ 178 (423)
T KOG0313|consen 111 VKGASKWILTGSYDGTSRIWDLK-GKSIKTIVG-HTGPIKSVAWVIKNSSSCLFVSAS----MD------QTLRLWKWNV 178 (423)
T ss_pred hcccCceEEEeecCCeeEEEecC-CceEEEEec-CCcceeeeEEEecCCccceEEEec----CC------ceEEEEEecC
Confidence 99999999999999999999988 999999988 8889998888444444 87766 46 8999999987
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCe
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHV 257 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~ 257 (485)
|..-.....-..+|-..+.+|+-+ ++|..+.|||.|.++|||+..+ +..-++..... .=....+.- .
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~---~rrk~~~~~--------~ 245 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN---RRRKKQKRE--------K 245 (423)
T ss_pred chhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCC-Cccccccccch---hhhhhhhhh--------h
Confidence 776211111111455667788876 7999999999999999999432 22222221100 000011100 1
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEE
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
. ..++..+-+|.||...|.+|.|.+ .+.+.++|+|+|||.||+.+|.++.++.+. ....++..+|...+||+
T Consensus 246 ~-----~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~ 317 (423)
T KOG0313|consen 246 E-----GGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLAS 317 (423)
T ss_pred c-----ccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeee
Confidence 1 136778999999999999999964 788899999999999999999999888655 47899999999999999
Q ss_pred Ee-CCcEEEEeCC---CcE-EEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-E
Q 011452 338 FR-NRTVAVWNFR---GEL-VTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGK-C 410 (485)
Q Consensus 338 ~s-D~TIklWd~~---G~l-l~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~ 410 (485)
|+ |+.|+|||.+ |.. .++|.||.+| |.++.++|-. ..|+|+|. |+|+||||+.+-+ .
T Consensus 318 gssdr~irl~DPR~~~gs~v~~s~~gH~nw-----Vssvkwsp~~~~~~~S~S~-----------D~t~klWDvRS~k~p 381 (423)
T KOG0313|consen 318 GSSDRHIRLWDPRTGDGSVVSQSLIGHKNW-----VSSVKWSPTNEFQLVSGSY-----------DNTVKLWDVRSTKAP 381 (423)
T ss_pred cCCCCceeecCCCCCCCceeEEeeecchhh-----hhheecCCCCceEEEEEec-----------CCeEEEEEeccCCCc
Confidence 99 9999999984 444 5799999999 9999999954 66788887 8999999999888 8
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|.+|.+|.+ .|.++.++. +..|+||+.|++|++..
T Consensus 382 lydI~~h~D--------------------------------------Kvl~vdW~~-~~~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 382 LYDIAGHND--------------------------------------KVLSVDWNE-GGLIVSGGADNKLRIFK 416 (423)
T ss_pred ceeeccCCc--------------------------------------eEEEEeccC-CceEEeccCcceEEEec
Confidence 999999974 899999974 77899999999999863
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=276.60 Aligned_cols=235 Identities=17% Similarity=0.279 Sum_probs=216.2
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG 267 (485)
+|++|+.+|+|+ |-.+.+++||.|+||||||+++|++..++.++ .|.+|+||+-.-++.++. .|+.||-||++..
T Consensus 149 gHlgWVr~vavd-P~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g--edk~VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVD-PGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG--EDKQVKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeC-CCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec--CCCeeEEEechhh
Confidence 589999999998 67899999999999999999999999999874 799999998777777655 4589999999999
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
+.++.+-||++.|..++.. |..+.|++++.|.|+||||+++...+.++.||...|.+|.+-|-.-.++|+| |.||+||
T Consensus 226 kvIR~YhGHlS~V~~L~lh-PTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlW 304 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLH-PTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLW 304 (460)
T ss_pred hhHHHhccccceeEEEecc-ccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEe
Confidence 9999999999999999987 5677899999999999999999999999999999999999998777799999 9999999
Q ss_pred eCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 347 NFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 347 d~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
|+. |+-..++..|.-. |+.++..|.-..+||+|. ..||=|++..|+.++.|.+|+.
T Consensus 305 Dl~agkt~~tlt~hkks-----vral~lhP~e~~fASas~------------dnik~w~~p~g~f~~nlsgh~~------ 361 (460)
T KOG0285|consen 305 DLRAGKTMITLTHHKKS-----VRALCLHPKENLFASASP------------DNIKQWKLPEGEFLQNLSGHNA------ 361 (460)
T ss_pred eeccCceeEeeecccce-----eeEEecCCchhhhhccCC------------ccceeccCCccchhhccccccc------
Confidence 996 9999999999866 999999999999999997 4699999999999999999983
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
-|.+|+...|| .+++|+..|++..||
T Consensus 362 --------------------------------iintl~~nsD~-v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 362 --------------------------------IINTLSVNSDG-VLVSGGDNGSIMFWD 387 (460)
T ss_pred --------------------------------eeeeeeeccCc-eEEEcCCceEEEEEe
Confidence 78899999987 588999999999998
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-31 Score=256.53 Aligned_cols=254 Identities=13% Similarity=0.135 Sum_probs=212.2
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISP 243 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSp 243 (485)
+|||+|...+|++.. .+++ .-.++..++.. ||++.||.++ -..||++|+.+++ .+.++. .++|.+|.|.-
T Consensus 20 hTIRfWqa~tG~C~r---Tiqh-~dsqVNrLeiT-pdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 20 HTIRFWQALTGICSR---TIQH-PDSQVNRLEIT-PDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred ceeeeeehhcCeEEE---EEec-CccceeeEEEc-CCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEEEEEee
Confidence 899999999999943 3443 12456689997 7999999876 6789999999877 466664 57999999997
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-Cc
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MT 322 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~ 322 (485)
+++.+.+++ .|+|+||||+..-.|.+.|.+ ...|..|... |.-.-|+++-.++.|++||+.+..|.+.+..+. ..
T Consensus 94 dgrWMyTgs--eDgt~kIWdlR~~~~qR~~~~-~spVn~vvlh-pnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~ 169 (311)
T KOG0315|consen 94 DGRWMYTGS--EDGTVKIWDLRSLSCQRNYQH-NSPVNTVVLH-PNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTS 169 (311)
T ss_pred cCeEEEecC--CCceEEEEeccCcccchhccC-CCCcceEEec-CCcceEEeecCCCcEEEEEccCCccccccCCCCCcc
Confidence 666666654 569999999999888777774 4788898876 445567777899999999999998887775543 47
Q ss_pred eEEEEEcCCCcEEEEEe-CCcEEEEeCC-C------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 323 PSAFIFLYENQLFLTFR-NRTVAVWNFR-G------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 323 v~avaFspdg~llaS~s-D~TIklWd~~-G------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
|.+++..|||.+|+.+. -|+.-+|++- + +.+..|..|... +....+|||+++||++|.
T Consensus 170 i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~-----il~C~lSPd~k~lat~ss--------- 235 (311)
T KOG0315|consen 170 IQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGH-----ILRCLLSPDVKYLATCSS--------- 235 (311)
T ss_pred eeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccce-----EEEEEECCCCcEEEeecC---------
Confidence 89999999999999998 8999999983 3 245678888877 899999999999999986
Q ss_pred CCCCeEEEEeCCCC-eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE
Q 011452 395 GNAGSINISNILTG-KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT 473 (485)
Q Consensus 395 ~~DgtIklWdl~TG-k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS 473 (485)
|.|+|||++.+- +.-..+++|+ +|||..+||.||++|+|
T Consensus 236 --dktv~iwn~~~~~kle~~l~gh~--------------------------------------rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 236 --DKTVKIWNTDDFFKLELVLTGHQ--------------------------------------RWVWDCAFSADGEYLVT 275 (311)
T ss_pred --CceEEEEecCCceeeEEEeecCC--------------------------------------ceEEeeeeccCccEEEe
Confidence 799999999887 7778899997 39999999999999999
Q ss_pred ecCCCcEEEccC
Q 011452 474 GNRHGLVHVWSN 485 (485)
Q Consensus 474 gs~DgtVklWd~ 485 (485)
||.|+++|+|+.
T Consensus 276 assd~~~rlW~~ 287 (311)
T KOG0315|consen 276 ASSDHTARLWDL 287 (311)
T ss_pred cCCCCceeeccc
Confidence 999999999984
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=287.68 Aligned_cols=233 Identities=15% Similarity=0.228 Sum_probs=208.8
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.+.+|.|. |....+..+-..|.|.|||.++.+++.+++ +.+|++.+|=+ -+.++++ + +|..||+++..|++.+
T Consensus 15 RVKsVd~H-PtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~G-s--DD~~IrVfnynt~ekV 90 (794)
T KOG0276|consen 15 RVKSVDFH-PTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTG-S--DDMQIRVFNYNTGEKV 90 (794)
T ss_pred ceeeeecC-CCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEe-c--CCceEEEEecccceee
Confidence 45589997 677777777889999999999999999986 56899999997 5565554 3 4589999999999999
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEe
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd 347 (485)
++|..|.+.+++|+-+| ..-.+|++|+|-+||+||.+.+ .|.+++.||.+.|..|+|.| |...|||+| |+|||+|.
T Consensus 91 ~~FeAH~DyIR~iavHP-t~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWs 169 (794)
T KOG0276|consen 91 KTFEAHSDYIRSIAVHP-TLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWS 169 (794)
T ss_pred EEeeccccceeeeeecC-CCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEE
Confidence 99999999999999874 4569999999999999999975 78999999999999999987 888999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCC--CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQ--DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG--~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+. -.+..||+||.-- ||.|.+-|-| -+|+||++ |.||||||.+|.+|++||.||.+
T Consensus 170 lgs~~~nfTl~gHekG-----VN~Vdyy~~gdkpylIsgaD-----------D~tiKvWDyQtk~CV~TLeGHt~----- 228 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKG-----VNCVDYYTGGDKPYLISGAD-----------DLTIKVWDYQTKSCVQTLEGHTN----- 228 (794)
T ss_pred cCCCCCceeeeccccC-----cceEEeccCCCcceEEecCC-----------CceEEEeecchHHHHHHhhcccc-----
Confidence 94 8899999999976 9999998866 49999986 79999999999999999999984
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|..+.|+|.=.+|+|||+|||||||..
T Consensus 229 ---------------------------------Nvs~v~fhp~lpiiisgsEDGTvriWhs 256 (794)
T KOG0276|consen 229 ---------------------------------NVSFVFFHPELPIIISGSEDGTVRIWNS 256 (794)
T ss_pred ---------------------------------cceEEEecCCCcEEEEecCCccEEEecC
Confidence 7889999999999999999999999963
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-29 Score=241.23 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=209.5
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+.++++++.|+++++||..+|+++.++.+ +. .+++++|+|+|+.|+.++ ..+ .++.+|++.+|+...
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~-~~-~~~~l~~~~dg~~l~~~~---~~~------~~v~~~d~~~~~~~~-- 67 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPV-GQ-RPRGITLSKDGKLLYVCA---SDS------DTIQVIDLATGEVIG-- 67 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEEC-CC-CCCceEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEE--
Confidence 35788999999999999999999998876 43 378999999999875433 133 589999998887621
Q ss_pred ceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
.+.. ...+..++|+ |+|+.| ++++.|+++++||+.+++++..+. +..+.+++|+|++.+++.+..+ ...+.+|
T Consensus 68 -~~~~--~~~~~~~~~~-~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~-~~~~~~~ 142 (300)
T TIGR03866 68 -TLPS--GPDPELFALH-PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSET-TNMAHFI 142 (300)
T ss_pred -eccC--CCCccEEEEC-CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecC-CCeEEEE
Confidence 1222 1224578897 788766 455679999999999998888876 4568899999977666554432 2467889
Q ss_pred ecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCC-------CceEEEEEcCCCcE
Q 011452 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEF-------MTPSAFIFLYENQL 334 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~-------~~v~avaFspdg~l 334 (485)
|.++++++..+... .....++|+ ++++.|++++ .|++|++||+++++++..+..+. ..+..++|+|||+.
T Consensus 143 d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~ 220 (300)
T TIGR03866 143 DTKTYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKT 220 (300)
T ss_pred eCCCCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCE
Confidence 99999988766422 345678886 6777786664 79999999999998877654321 23456889999998
Q ss_pred EEE-Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 335 FLT-FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 335 laS-~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
++. .. +++|.+||.+ ++++..+..+ .. +..++|+|||++|++++. .+++|++||+.+++++
T Consensus 221 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~-----~~~~~~~~~g~~l~~~~~----------~~~~i~v~d~~~~~~~ 284 (300)
T TIGR03866 221 AFVALGPANRVAVVDAKTYEVLDYLLVG-QR-----VWQLAFTPDEKYLLTTNG----------VSNDVSVIDVAALKVI 284 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEeC-CC-----cceEEECCCCCEEEEEcC----------CCCeEEEEECCCCcEE
Confidence 543 44 7789999996 8887765422 22 789999999999998753 2799999999999999
Q ss_pred EEecCC
Q 011452 412 AKIRAS 417 (485)
Q Consensus 412 ~tl~gH 417 (485)
.+++..
T Consensus 285 ~~~~~~ 290 (300)
T TIGR03866 285 KSIKVG 290 (300)
T ss_pred EEEEcc
Confidence 999764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.4e-31 Score=287.52 Aligned_cols=274 Identities=15% Similarity=0.202 Sum_probs=233.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
....|.+|+|.|---.|+++ |.-+.|.+||-+.|.+.. -|. +|-+.+..|.|. |.+.+++||++|
T Consensus 8 kSsRvKglsFHP~rPwILts----------lHsG~IQlWDYRM~tli~---rFd-eHdGpVRgv~FH-~~qplFVSGGDD 72 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWILTS----------LHSGVIQLWDYRMGTLID---RFD-EHDGPVRGVDFH-PTQPLFVSGGDD 72 (1202)
T ss_pred ccccccceecCCCCCEEEEe----------ecCceeeeehhhhhhHHh---hhh-ccCCccceeeec-CCCCeEEecCCc
Confidence 34578999999998887662 333699999999998733 244 467788899997 899999999999
Q ss_pred CcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 215 SIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
-+||||+.++-+|+++|.+| .|+.+.|++.--.+.|+| +|+||+||+.++++|+..++||.|.|.+.+|. |..+.
T Consensus 73 ykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS--DDQTIrIWNwqsr~~iavltGHnHYVMcAqFh-ptEDl 149 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS--DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFH-PTEDL 149 (1202)
T ss_pred cEEEEEecccceehhhhccccceeEEeeccCCCceEEEcc--CCCeEEEEeccCCceEEEEecCceEEEeeccC-Cccce
Confidence 99999999999999999864 899999998555555554 56999999999999999999999999999998 56778
Q ss_pred EEEEeCCCcEEEEECCCCe-----------------------------eEEecccCCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 293 LLVKQENENLQILDVRNFE-----------------------------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 293 lls~s~D~tIkIWDv~tg~-----------------------------~~~~l~gh~~~v~avaFspdg~llaS~s-D~T 342 (485)
++++|-|.|||+||+..-+ ...++.||.-.|+.++|.|.-.+++||+ |+.
T Consensus 150 IVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq 229 (1202)
T KOG0292|consen 150 IVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ 229 (1202)
T ss_pred EEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce
Confidence 8889999999999986310 1456789999999999999999999999 999
Q ss_pred EEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 343 VAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 343 IklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
||+|-.+ .+ .+-|..||.+. |.++-|.|.+++|+|.|. |++||+||+...+++++++--+
T Consensus 230 VKlWrmnetKaWEvDtcrgH~nn-----Vssvlfhp~q~lIlSnsE-----------DksirVwDm~kRt~v~tfrren- 292 (1202)
T KOG0292|consen 230 VKLWRMNETKAWEVDTCRGHYNN-----VSSVLFHPHQDLILSNSE-----------DKSIRVWDMTKRTSVQTFRREN- 292 (1202)
T ss_pred eeEEEeccccceeehhhhcccCC-----cceEEecCccceeEecCC-----------CccEEEEecccccceeeeeccC-
Confidence 9999995 44 67899999976 999999999999999886 8999999999999999997533
Q ss_pred CCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 420 LPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
+.-|.|+-+|..+.+|.|-..|.+
T Consensus 293 -------------------------------------dRFW~laahP~lNLfAAgHDsGm~ 316 (1202)
T KOG0292|consen 293 -------------------------------------DRFWILAAHPELNLFAAGHDSGMI 316 (1202)
T ss_pred -------------------------------------CeEEEEEecCCcceeeeecCCceE
Confidence 267789999999988877655544
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.8e-30 Score=259.98 Aligned_cols=324 Identities=9% Similarity=0.064 Sum_probs=263.3
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
..|+-|..+++.+...|. ...+|+|+.|-..-||++.+|..++++.+ |.+.|.++.||-||.+|||
T Consensus 58 ~tF~~H~~svFavsl~P~-------------~~l~aTGGgDD~AflW~~~~ge~~~eltg-HKDSVt~~~FshdgtlLAT 123 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPN-------------NNLVATGGGDDLAFLWDISTGEFAGELTG-HKDSVTCCSFSHDGTLLAT 123 (399)
T ss_pred eehhhcCCceEEEEeCCC-------------CceEEecCCCceEEEEEccCCcceeEecC-CCCceEEEEEccCceEEEe
Confidence 457778888888887777 88999999999999999999999999988 7888999999999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~- 232 (485)
+.-+ ..++||...+|... .++++. ..-+..+.+. |-+.+|+.|+.||.+-.|.+.++...+.+.
T Consensus 124 Gdms----------G~v~v~~~stg~~~--~~~~~e--~~dieWl~WH-p~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 124 GDMS----------GKVLVFKVSTGGEQ--WKLDQE--VEDIEWLKWH-PRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred cCCC----------ccEEEEEcccCceE--EEeecc--cCceEEEEec-ccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 5543 48999999888752 233322 3334467786 799999999999999999999866555555
Q ss_pred -CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc-eeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 233 -DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-NKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 233 -~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~-~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
+.++.+=.|.|+|+++..... |+||++||..||+++.++++..+. ...+.+. ..+..++.++.|+.+.+-+..+|
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~--dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~-~~~~~~~~g~~e~~~~~~~~~sg 265 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYD--DGTIIVWNPKTGQPLHKITQAEGLELPCISLN-LAGSTLTKGNSEGVACGVNNGSG 265 (399)
T ss_pred CCCCcccccccCCCceEEEEec--CceEEEEecCCCceeEEecccccCcCCccccc-cccceeEeccCCccEEEEccccc
Confidence 457999999987777766544 589999999999999999843322 3366765 45677777889999999999999
Q ss_pred eeEEecc--------cCCCceEEEE---EcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCC
Q 011452 311 ELTEVSR--------TEFMTPSAFI---FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 311 ~~~~~l~--------gh~~~v~ava---Fspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~ 378 (485)
+.+..++ .|...+.+|. |+..-.++|.|+ ||+|.|||+.-.-++..--|... |..+-|-+ -.
T Consensus 266 KVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~-----V~~l~w~~-t~ 339 (399)
T KOG0296|consen 266 KVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDG-----VTKLKWLN-TD 339 (399)
T ss_pred eEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCc-----eEEEEEcC-cc
Confidence 9887776 4555555554 566778899999 99999999974333333346655 89999998 67
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALED 458 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (485)
+|+++|. +|+||+||..||+|+.++.||+. .
T Consensus 340 ~l~t~c~-----------~g~v~~wDaRtG~l~~~y~GH~~--------------------------------------~ 370 (399)
T KOG0296|consen 340 YLLTACA-----------NGKVRQWDARTGQLKFTYTGHQM--------------------------------------G 370 (399)
T ss_pred hheeecc-----------CceEEeeeccccceEEEEecCch--------------------------------------h
Confidence 8888887 79999999999999999999983 8
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 459 ITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 459 V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|...+++||.+.++|+|.|++.+|.+
T Consensus 371 Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 371 ILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred eeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 99999999999999999999999975
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-29 Score=264.72 Aligned_cols=317 Identities=12% Similarity=0.130 Sum_probs=239.5
Q ss_pred cCEEEEEeCCCeEEeeeccc-CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe--ccCCc-
Q 011452 105 RDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI--RRGKP- 180 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~t-G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~- 180 (485)
|.+||||..+|++|+|+..+ ...|+.-..--.+.|..|.|++|++.|+.++. |.++ ...+-+||- .-|++
T Consensus 71 G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGE-Grer-----fg~~F~~DSG~SvGei~ 144 (603)
T KOG0318|consen 71 GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGE-GRER-----FGHVFLWDSGNSVGEIT 144 (603)
T ss_pred ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEec-Cccc-----eeEEEEecCCCccceee
Confidence 99999999999999999664 33444322224568999999999999988764 4444 234455552 11111
Q ss_pred ------------------------Ccccceeee----------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe
Q 011452 181 ------------------------DAGFALFES----------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 181 ------------------------~~~~~lf~~----------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~ 226 (485)
|.....|+. +|.+.+.+|.|+ |||..+|+.+.|++|-|+|=++|+
T Consensus 145 GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRys-PDG~~Fat~gsDgki~iyDGktge 223 (603)
T KOG0318|consen 145 GHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYS-PDGSRFATAGSDGKIYIYDGKTGE 223 (603)
T ss_pred ccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEEC-CCCCeEEEecCCccEEEEcCCCcc
Confidence 222223331 355667789998 899999999999999999999999
Q ss_pred EEEEEcC-----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe----------------------------
Q 011452 227 MLYSISD-----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF---------------------------- 273 (485)
Q Consensus 227 ~l~tl~~-----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl---------------------------- 273 (485)
.+..|.+ ..|.+|++|||+..+.++++ |.|+||||+.++++.+++
T Consensus 224 ~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa--Dkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~ 301 (603)
T KOG0318|consen 224 KVGELEDSDAHKGSIFALSWSPDSTQFLTVSA--DKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGT 301 (603)
T ss_pred EEEEecCCCCccccEEEEEECCCCceEEEecC--CceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcE
Confidence 9999962 47999999997777766665 489999999999888764
Q ss_pred ---------------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccC------------------
Q 011452 274 ---------------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTE------------------ 319 (485)
Q Consensus 274 ---------------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh------------------ 319 (485)
.||...+.++..+ +++.+|++++.||.|-=||..+|.+-+.. ++|
T Consensus 302 in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 302 INYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTI 380 (603)
T ss_pred EEEecccCCChhheecccccceeEEEEc-CCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEE
Confidence 3444445555554 67788899999999999998876432110 011
Q ss_pred --------------------------------------------------------------CCceEEEEEcCCCcEEEE
Q 011452 320 --------------------------------------------------------------FMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 320 --------------------------------------------------------------~~~v~avaFspdg~llaS 337 (485)
.-.+.++|++||++.+|-
T Consensus 381 g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaV 460 (603)
T KOG0318|consen 381 GWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAV 460 (603)
T ss_pred ecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEE
Confidence 123567889999999999
Q ss_pred Ee-CCcEEEEeCCC-cE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 338 FR-NRTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 338 ~s-D~TIklWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
|. |+.|.|+.+.| ++ ...++.|... +..|+|||||.+||++.. .+.|-+||+++.+....
T Consensus 461 GG~Dgkvhvysl~g~~l~ee~~~~~h~a~-----iT~vaySpd~~yla~~Da-----------~rkvv~yd~~s~~~~~~ 524 (603)
T KOG0318|consen 461 GGQDGKVHVYSLSGDELKEEAKLLEHRAA-----ITDVAYSPDGAYLAAGDA-----------SRKVVLYDVASREVKTN 524 (603)
T ss_pred ecccceEEEEEecCCcccceeeeecccCC-----ceEEEECCCCcEEEEecc-----------CCcEEEEEcccCceecc
Confidence 99 99999999985 43 3356788887 999999999999999865 58999999998876322
Q ss_pred ecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 414 IRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 414 l~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
--+ |+ ..|.+|+||||.+.+||||-|-.|.||+.
T Consensus 525 ~w~FHt--------------------------------------akI~~~aWsP~n~~vATGSlDt~Viiysv 559 (603)
T KOG0318|consen 525 RWAFHT--------------------------------------AKINCVAWSPNNKLVATGSLDTNVIIYSV 559 (603)
T ss_pred eeeeee--------------------------------------eeEEEEEeCCCceEEEeccccceEEEEEc
Confidence 222 43 38999999999999999999999999973
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=276.68 Aligned_cols=277 Identities=14% Similarity=0.195 Sum_probs=230.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
+.+.|.||.|.|---.++. +.| + +++.||+-.+..+- +-|+-. -..+.+..|= +.-..++.||+|
T Consensus 12 rSdRVKsVd~HPtePw~la-~Ly---n------G~V~IWnyetqtmV---ksfeV~-~~PvRa~kfi-aRknWiv~GsDD 76 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWILA-ALY---N------GDVQIWNYETQTMV---KSFEVS-EVPVRAAKFI-ARKNWIVTGSDD 76 (794)
T ss_pred cCCceeeeecCCCCceEEE-eee---c------CeeEEEecccceee---eeeeec-ccchhhheee-eccceEEEecCC
Confidence 6678999999998776654 443 3 68999997665542 234321 1234456665 466789999999
Q ss_pred CcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeecCCcceeEEEEEecCCC
Q 011452 215 SIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
..|||++..|++.+.+++ .+.|++|+.+|..-.+.++| +|.+||+||.+.+ .|.++|+||.|.|..|+|.|-|+.
T Consensus 77 ~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS--DDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~n 154 (794)
T KOG0276|consen 77 MQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS--DDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPN 154 (794)
T ss_pred ceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC--CccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcc
Confidence 999999999999999986 45899999999666666655 4589999999764 578999999999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC--CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp--dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
++++++-|.|||+|.+.+..+..+|.||...|++|.|-| |..+|+||+ |.||||||.+ -.|++||+||..-
T Consensus 155 tFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N----- 229 (794)
T KOG0276|consen 155 TFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN----- 229 (794)
T ss_pred ceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc-----
Confidence 999999999999999999999999999999999999976 456899999 9999999997 7899999999965
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
|+.++|.|.=-+|+|||. |||+|||+-.|=+...+
T Consensus 230 vs~v~fhp~lpiiisgsE-----------DGTvriWhs~Ty~lE~t---------------------------------- 264 (794)
T KOG0276|consen 230 VSFVFFHPELPIIISGSE-----------DGTVRIWNSKTYKLEKT---------------------------------- 264 (794)
T ss_pred ceEEEecCCCcEEEEecC-----------CccEEEecCcceehhhh----------------------------------
Confidence 999999999999999987 89999999776544433
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+.+.++.||+++-.+.+..++.|...|.|-|
T Consensus 265 ----Ln~gleRvW~I~~~k~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 265 ----LNYGLERVWCIAAHKGDGKIAVGFDEGSVTV 295 (794)
T ss_pred ----hhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence 3445679999999999999999988887643
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-31 Score=288.29 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=209.8
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
|++.+ ..+..++|. |.--.+.++-..|+|++||..=|+++..+ |+.+|+.|+|+|.+-+.+|++ +|..||+|+.
T Consensus 5 fEskS-sRvKglsFH-P~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGG--DDykIkVWnY 80 (1202)
T KOG0292|consen 5 FESKS-SRVKGLSFH-PKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGG--DDYKIKVWNY 80 (1202)
T ss_pred hhccc-ccccceecC-CCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecC--CccEEEEEec
Confidence 55532 335689997 78888888889999999999988888877 467999999999988888754 4589999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
.+.+||.||.||++.|+.|.|.. .=--++++|+|.||||||.++++|+.+++||.+.|.+..|.|...+++|+| |.||
T Consensus 81 k~rrclftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred ccceehhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 99999999999999999999973 234789999999999999999999999999999999999999999999999 9999
Q ss_pred EEEeCCCc------------------------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 344 AVWNFRGE------------------------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 344 klWd~~G~------------------------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+|||+.|- ..+.|+||.-- ||-++|.|.--+|+||++
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRG-----VNwaAfhpTlpliVSG~D-------- 226 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRG-----VNWAAFHPTLPLIVSGAD-------- 226 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccc-----cceEEecCCcceEEecCC--------
Confidence 99995431 12468888765 999999999999999986
Q ss_pred cCCCCeEEEEeCCCCe--EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 394 EGNAGSINISNILTGK--CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 394 ~~~DgtIklWdl~TGk--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
|..||||....-+ .+-|.+||.+ .|++|-|+|.-..|
T Consensus 227 ---DRqVKlWrmnetKaWEvDtcrgH~n--------------------------------------nVssvlfhp~q~lI 265 (1202)
T KOG0292|consen 227 ---DRQVKLWRMNETKAWEVDTCRGHYN--------------------------------------NVSSVLFHPHQDLI 265 (1202)
T ss_pred ---cceeeEEEeccccceeehhhhcccC--------------------------------------CcceEEecCcccee
Confidence 7999999976444 5778899985 79999999999999
Q ss_pred EEecCCCcEEEccC
Q 011452 472 YTGNRHGLVHVWSN 485 (485)
Q Consensus 472 aSgs~DgtVklWd~ 485 (485)
.|.|+|++|||||.
T Consensus 266 lSnsEDksirVwDm 279 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDM 279 (1202)
T ss_pred EecCCCccEEEEec
Confidence 99999999999984
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-31 Score=276.30 Aligned_cols=288 Identities=14% Similarity=0.203 Sum_probs=243.4
Q ss_pred CcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeeccccCceEEEEeC
Q 011452 125 NQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDD 202 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~ 202 (485)
-+.++++.| |...|.++-|.| -+.+|.+++. | ..++||++.. |++. ..|. +|...+..+.|+
T Consensus 204 kk~~~~~~g-H~kgvsai~~fp~~~hLlLS~gm----D------~~vklW~vy~~~~~l---rtf~-gH~k~Vrd~~~s- 267 (503)
T KOG0282|consen 204 KKLSHNLSG-HTKGVSAIQWFPKKGHLLLSGGM----D------GLVKLWNVYDDRRCL---RTFK-GHRKPVRDASFN- 267 (503)
T ss_pred HhheeeccC-CccccchhhhccceeeEEEecCC----C------ceEEEEEEecCccee---hhhh-cchhhhhhhhcc-
Confidence 456778888 888999999999 8999988664 4 5999999955 6663 2344 355667789998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc--eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~--~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~ 279 (485)
.+|..+.|+|.|+++|+||++||+++..++ +..+.+|+|.|++ +++++. .|+.|+.||+.+|+.++.+..|++.
T Consensus 268 ~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~kvvqeYd~hLg~ 344 (503)
T KOG0282|consen 268 NCGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGKVVQEYDRHLGA 344 (503)
T ss_pred ccCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccchHHHHHHHhhhhh
Confidence 799999999999999999999999999998 5678999999844 555543 4589999999999999999999999
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC----CcEE
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----GELV 353 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----G~ll 353 (485)
+..|.|. ++|.+.+++++|++++||+.+.+-.++.. ..+.....++...|++..++.=+ |+-|-|.... -...
T Consensus 345 i~~i~F~-~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkk 423 (503)
T KOG0282|consen 345 ILDITFV-DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKK 423 (503)
T ss_pred eeeeEEc-cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHh
Confidence 9999998 67999999999999999999988765543 33444667888999999999999 9999999863 2345
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
..|+||... .+ -..|.|||||.+|+||+. ||.+.+||..|-+++.++++|+
T Consensus 424 K~feGh~va--Gy-s~~v~fSpDG~~l~SGds-----------dG~v~~wdwkt~kl~~~lkah~--------------- 474 (503)
T KOG0282|consen 424 KRFEGHSVA--GY-SCQVDFSPDGRTLCSGDS-----------DGKVNFWDWKTTKLVSKLKAHD--------------- 474 (503)
T ss_pred hhhcceecc--Cc-eeeEEEcCCCCeEEeecC-----------CccEEEeechhhhhhhccccCC---------------
Confidence 689999865 33 357999999999999986 7999999999999999999997
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd 484 (485)
+.+..+.|+|-- ..+||++.||.||+|+
T Consensus 475 -----------------------~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 -----------------------QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -----------------------cceEEEEecCCCcceeEecccCceeEecC
Confidence 288999999965 5799999999999997
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-31 Score=265.98 Aligned_cols=290 Identities=16% Similarity=0.205 Sum_probs=242.5
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-----cceeeeccccCceEEEEeC
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDD 202 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-----~~lf~~~~~~~~~~V~Fs~ 202 (485)
-+++..+...-+.+..|||||++|+++|+|| -+.+|+..+|++... +.-|-. .-..+..+.||
T Consensus 205 ~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDG----------FiEVWny~~GKlrKDLkYQAqd~fMM-md~aVlci~FS- 272 (508)
T KOG0275|consen 205 ARSIKFGQKSHVECARFSPDGQYLVSGSVDG----------FIEVWNYTTGKLRKDLKYQAQDNFMM-MDDAVLCISFS- 272 (508)
T ss_pred hhheecccccchhheeeCCCCceEeeccccc----------eeeeehhccchhhhhhhhhhhcceee-cccceEEEeec-
Confidence 3445555666688999999999999988754 788999999998422 222221 12345578998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
-|...||+|++||.||||.+.+|.|+..+. ...|.++.|| ++..++++ +.|.|+||--+..|++|+.|+||..
T Consensus 273 RDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~---sfD~tvRiHGlKSGK~LKEfrGHsS 349 (508)
T KOG0275|consen 273 RDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA---SFDQTVRIHGLKSGKCLKEFRGHSS 349 (508)
T ss_pred ccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc---cccceEEEeccccchhHHHhcCccc
Confidence 799999999999999999999999998884 5689999999 56666643 5679999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCCCcEEE
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~G~ll~ 354 (485)
.+..+.|. ++|..+++++.|+|||+|+..+.+|+.+++ +..-.|++|+..|- -..++.+. .+||-|-|++|+.++
T Consensus 350 yvn~a~ft-~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVr 428 (508)
T KOG0275|consen 350 YVNEATFT-DDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVR 428 (508)
T ss_pred cccceEEc-CCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEe
Confidence 99999996 789999999999999999999999999974 45568999987664 45677777 999999999999999
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
+|..-.-. .+-.-+.+.||.|++|-+.+. |+.+.-+++.+|++-.++.-|+.
T Consensus 429 sfsSGkRE--gGdFi~~~lSpkGewiYcigE-----------D~vlYCF~~~sG~LE~tl~VhEk--------------- 480 (508)
T KOG0275|consen 429 SFSSGKRE--GGDFINAILSPKGEWIYCIGE-----------DGVLYCFSVLSGKLERTLPVHEK--------------- 480 (508)
T ss_pred eeccCCcc--CCceEEEEecCCCcEEEEEcc-----------CcEEEEEEeecCceeeeeecccc---------------
Confidence 99743321 122457788999999988765 89999999999999999999972
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|-.++-+|-.+.|||=|+||++|||.
T Consensus 481 -----------------------dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 -----------------------DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred -----------------------cccccccCcccchhhhhcccchhhhcC
Confidence 788999999999999999999999995
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=271.48 Aligned_cols=345 Identities=13% Similarity=0.092 Sum_probs=252.4
Q ss_pred CccccchhhhhhhcccccccCcccccchhHHHhhhccccccccccCCCCcccccccccccc-cc----eEEEEEe--cCE
Q 011452 35 FDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKR-SK----IIEIVAA--RDI 107 (485)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-s~----V~~i~~s--~~~ 107 (485)
-++..-.++-+|-|-.....+++..- |+-=-.+.|-.-..+.+.|.. ++..+|.... ++ |..|... |..
T Consensus 35 VDy~s~v~~~~~nR~~~~~~d~~~~~---p~~~~~~~~~pp~~~~~dp~~-~~~tKf~h~s~NKvkc~V~~v~WtPeGRR 110 (464)
T KOG0284|consen 35 VDYNSPVCNYRQNRRWQYDRDRALLQ---PDSSYIIDLVPPSLYLDDPSS-AFTTKFVHTSSNKVKCPVNVVRWTPEGRR 110 (464)
T ss_pred cCCCcHHHHHHHHHhhcccccccccC---CCchhhhcccChhhccCCccc-ccccceEeccccccccceeeEEEcCCCce
Confidence 45566666667766655554554321 111122333322333333332 3335554433 34 4445555 899
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
|++|+++|-..|||.. .=...++...|+..|+++.++++|..++|++. + ..||+|+...... +.+
T Consensus 111 Lltgs~SGEFtLWNg~-~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~----g------G~iKyWqpnmnnV----k~~ 175 (464)
T KOG0284|consen 111 LLTGSQSGEFTLWNGT-SFNFETILQAHDSPVRTMKWSHNGTWMISGDK----G------GMIKYWQPNMNNV----KII 175 (464)
T ss_pred eEeecccccEEEecCc-eeeHHHHhhhhcccceeEEEccCCCEEEEcCC----C------ceEEecccchhhh----HHh
Confidence 9999999999999942 22223456679999999999999999998553 3 6999999643332 234
Q ss_pred eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~ 265 (485)
...+-..+..|+|+ |+...++++|.|++|||||...++.-..|. +-.|.+|+++|..-|+++++. |.+|||||..
T Consensus 176 ~ahh~eaIRdlafS-pnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk--DnlVKlWDpr 252 (464)
T KOG0284|consen 176 QAHHAEAIRDLAFS-PNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK--DNLVKLWDPR 252 (464)
T ss_pred hHhhhhhhheeccC-CCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC--CceeEeecCC
Confidence 33233456799999 566777899999999999998888655554 457999999997777766554 4799999999
Q ss_pred CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-CCcE
Q 011452 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRTV 343 (485)
Q Consensus 266 tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s-D~TI 343 (485)
+|+||.++.+|.+.|.+|.|. +.+..||++|.|.++|++|+++-+.+.++++|...|++++++|= -.+|.|++ |+.|
T Consensus 253 Sg~cl~tlh~HKntVl~~~f~-~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv 331 (464)
T KOG0284|consen 253 SGSCLATLHGHKNTVLAVKFN-PNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV 331 (464)
T ss_pred CcchhhhhhhccceEEEEEEc-CCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce
Confidence 999999999999999999997 66789999999999999999998889999999999999999984 45677777 9999
Q ss_pred EEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CCCeEEEEecCCC
Q 011452 344 AVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI-LTGKCLAKIRASN 418 (485)
Q Consensus 344 klWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~TGk~l~tl~gH~ 418 (485)
..|.+. -+.+-.++ +|..- |+++++.|=|.+|++|+. |.|+|.|.- ..|+-.+..-++.
T Consensus 332 vh~~v~~~~p~~~i~~AHd~~-----iwsl~~hPlGhil~tgsn-----------d~t~rfw~r~rp~d~~~~~~~~~ 393 (464)
T KOG0284|consen 332 VHWVVGLEEPLGEIPPAHDGE-----IWSLAYHPLGHILATGSN-----------DRTVRFWTRNRPGDKNADDVGLS 393 (464)
T ss_pred EEEeccccccccCCCcccccc-----eeeeeccccceeEeecCC-----------CcceeeeccCCCCCccccccccc
Confidence 999996 44444443 56544 999999999999999886 899999974 2344444444433
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=264.40 Aligned_cols=285 Identities=12% Similarity=0.188 Sum_probs=233.7
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeee--ccccCceEEEEeCCCC
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFES--ESLKWPGFVEFDDVNG 205 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG 205 (485)
.+|.- |.+-||=+.||+||++|||+|.| .|+-||.+ ..+++ +|..+ +|...+.++.|| ||.
T Consensus 218 qil~~-htdEVWfl~FS~nGkyLAsaSkD----------~Taiiw~v~~d~~~----kl~~tlvgh~~~V~yi~wS-PDd 281 (519)
T KOG0293|consen 218 QILQD-HTDEVWFLQFSHNGKYLASASKD----------STAIIWIVVYDVHF----KLKKTLVGHSQPVSYIMWS-PDD 281 (519)
T ss_pred hhHhh-CCCcEEEEEEcCCCeeEeeccCC----------ceEEEEEEecCcce----eeeeeeecccCceEEEEEC-CCC
Confidence 35555 77779999999999999998843 48889988 34442 33332 344556688998 788
Q ss_pred eEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-ccee
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNK 281 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~ 281 (485)
++|++|+.|..+++||+.+|.+.+..+ +..|.++++.||+..+++++ .|.+|-.||+ +|.++..-++-. ..+.
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs--~dr~i~~wdl-Dgn~~~~W~gvr~~~v~ 358 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGS--PDRTIIMWDL-DGNILGNWEGVRDPKVH 358 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecC--CCCcEEEecC-CcchhhcccccccceeE
Confidence 999999999999999999999887775 35799999999888888865 4589999997 888888777521 3467
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
.++.. +||.++++...|..|+|++.++..++.....| ..+.++..|-||++++.-= +.+|.+||++ .++++.+.||
T Consensus 359 dlait-~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Gh 436 (519)
T KOG0293|consen 359 DLAIT-YDGKYVLLVTVDKKIRLYNREARVDRGLISEE-QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGH 436 (519)
T ss_pred EEEEc-CCCcEEEEEecccceeeechhhhhhhcccccc-CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcc
Confidence 88864 78999999999999999999998887655444 4799999999999999887 9999999996 8899999999
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
...+.- |.+..=--|.++|||||. |+.|+||+..+|+.+++|.||..
T Consensus 437 kq~~fi--IrSCFgg~~~~fiaSGSE-----------D~kvyIWhr~sgkll~~LsGHs~-------------------- 483 (519)
T KOG0293|consen 437 KQGHFI--IRSCFGGGNDKFIASGSE-----------DSKVYIWHRISGKLLAVLSGHSK-------------------- 483 (519)
T ss_pred cccceE--EEeccCCCCcceEEecCC-----------CceEEEEEccCCceeEeecCCcc--------------------
Confidence 875422 555444457799999987 79999999999999999999972
Q ss_pred cccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.|.+|+++|.. .++||||.|||||+|.+
T Consensus 484 ------------------~vNcVswNP~~p~m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 484 ------------------TVNCVSWNPADPEMFASASDDGTIRIWGP 512 (519)
T ss_pred ------------------eeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence 89999999966 56999999999999963
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=269.05 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=189.6
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-------------E--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-------------I--SDKNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-------------l--~~~~V~~VafSp-g~~ll~sss~~~D~tIkl 261 (485)
..++ +|+..+++++.+.....|+...|..+.. + |...|.+|+|+| ++.++++++ .|++|+|
T Consensus 26 ~~~~-~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS--~DgtIkI 102 (493)
T PTZ00421 26 STAL-WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS--EDGTIMG 102 (493)
T ss_pred cccc-CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe--CCCEEEE
Confidence 3454 5667777788888888888766554321 2 345799999999 665555554 4589999
Q ss_pred EecCCC-------eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 262 LSIEDG-------TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 262 Wdi~tG-------~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
||+.++ +++.+|.+|...+..|+|++..+..|++++.|++|+|||+++++++..+.+|...|.+++|+|+|++
T Consensus 103 Wdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~l 182 (493)
T PTZ00421 103 WGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSL 182 (493)
T ss_pred EecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCE
Confidence 999876 3578899999999999998433467888899999999999999999999999999999999999999
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-CL 411 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l 411 (485)
|+|++ |++|+|||++ |+++.++.+|... .+..+.|.|++.+|++++.+ .+.|++|+|||+.+.+ ++
T Consensus 183 Latgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~G~s-------~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 183 LCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITLGCS-------KSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEEecC-------CCCCCeEEEEeCCCCCCce
Confidence 99999 9999999996 9999999999754 14578899999999887642 2357999999998654 45
Q ss_pred EEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC-CCcEEEccC
Q 011452 412 AKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR-HGLVHVWSN 485 (485)
Q Consensus 412 ~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~-DgtVklWd~ 485 (485)
.++..|.. ..+....|+||++.|++|+. |++||+||+
T Consensus 252 ~~~~~d~~-------------------------------------~~~~~~~~d~d~~~L~lggkgDg~Iriwdl 289 (493)
T PTZ00421 252 STVDLDQS-------------------------------------SALFIPFFDEDTNLLYIGSKGEGNIRCFEL 289 (493)
T ss_pred eEeccCCC-------------------------------------CceEEEEEcCCCCEEEEEEeCCCeEEEEEe
Confidence 44443331 15667899999999999884 999999984
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-30 Score=273.58 Aligned_cols=278 Identities=16% Similarity=0.210 Sum_probs=228.4
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceE-EEEeCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF-VEFDDVN 204 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~pn 204 (485)
++-|.+.| |+.-|+.|+..+.. .|+++| .| +++++|.-+.++... ...|+ ++.+++.. ++|.+.+
T Consensus 5 ~ls~~l~g-H~~DVr~v~~~~~~-~i~s~s----Rd------~t~~vw~~~~~~~l~-~~~~~-~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 5 KLSHELEG-HKSDVRAVAVTDGV-CIISGS----RD------GTVKVWAKKGKQYLE-THAFE-GPKGFIANSICYAESD 70 (745)
T ss_pred eeEEEecc-CccchheeEecCCe-EEeecC----CC------CceeeeeccCccccc-ceecc-cCcceeeccceecccc
Confidence 45577877 77779999988866 577755 44 699999954444422 12233 24555544 6775445
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~ 282 (485)
+-.|..|+.|.+|-||.+.+...+++|.+| +|.++.+--++.++ ++ +-|.|+|+|-+ |++..++.+|+..||+
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~i-Sg--SWD~TakvW~~--~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLI-SG--SWDSTAKVWRI--GELVYSLQGHTASVWA 145 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceE-ec--ccccceEEecc--hhhhcccCCcchheee
Confidence 556889999999999999999999999764 79999877666654 43 45699999985 7899999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC
Q 011452 283 VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 361 (485)
Q Consensus 283 V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~ 361 (485)
|++.+ .+++++||.|+|||||.- +++++++.||++.|+.+++.|++. |+|++ ||.|++|+++|+++..+.||+.
T Consensus 146 v~~l~--e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn 220 (745)
T KOG0301|consen 146 VASLP--ENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTN 220 (745)
T ss_pred eeecC--CCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccce
Confidence 99874 349999999999999986 899999999999999999999987 66888 9999999999999999999999
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
. |.++...++++.|+|++. |+|+|||+. ++|++.|+=..
T Consensus 221 ~-----vYsis~~~~~~~Ivs~gE-----------DrtlriW~~--~e~~q~I~lPt----------------------- 259 (745)
T KOG0301|consen 221 F-----VYSISMALSDGLIVSTGE-----------DRTLRIWKK--DECVQVITLPT----------------------- 259 (745)
T ss_pred E-----EEEEEecCCCCeEEEecC-----------CceEEEeec--CceEEEEecCc-----------------------
Confidence 8 999998899999999986 899999996 49999996432
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
-.||++.+=++|. ||+|+.||.||||.
T Consensus 260 ---------------tsiWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 260 ---------------TSIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred ---------------cceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 2789999999997 77889999999994
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.1e-30 Score=250.63 Aligned_cols=292 Identities=15% Similarity=0.212 Sum_probs=229.1
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
|+| |+-++.-|-||.+|++|.|++.| .++.+|+-..|+... .+. +|.+.+|++..| -+.+.|++
T Consensus 6 l~G-HERplTqiKyN~eGDLlFscaKD----------~~~~vw~s~nGerlG---ty~-GHtGavW~~Did-~~s~~liT 69 (327)
T KOG0643|consen 6 LQG-HERPLTQIKYNREGDLLFSCAKD----------STPTVWYSLNGERLG---TYD-GHTGAVWCCDID-WDSKHLIT 69 (327)
T ss_pred ccc-CccccceEEecCCCcEEEEecCC----------CCceEEEecCCceee---eec-CCCceEEEEEec-CCcceeee
Confidence 566 99999999999999999998853 488899987888632 121 577888899887 58899999
Q ss_pred eeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC---CeeEEEEecC-------CCeEEEEeecCCcc
Q 011452 211 SAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG---HVPLKILSIE-------DGTVLKSFNHLLHR 279 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~---D~tIklWdi~-------tG~~L~tl~~~~~~ 279 (485)
||.|.++||||+++|++++++. +..|..+.|++++.++..+.+.. -..|-+.|++ .-+++..+..+...
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~sk 149 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSK 149 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccc
Confidence 9999999999999999999998 56899999998666655544432 2578899988 44446666655555
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+..+-|. |-++.|+++.+|+.|.+||+++| +.++.-+-|...|+.+.|+||..+|+|+| |.|-||||++ -++++|+
T Consensus 150 it~a~Wg-~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 150 ITSALWG-PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeeeec-ccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 6666665 67899999999999999999998 45666678999999999999999999999 9999999996 8999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC-CCCcCCCC--eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-PLAEGNAG--SINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d-~~~~~~Dg--tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
.--. .||+.+|+|-.+.++-|+..+.-| -.+..+.| -.|.+++-..+.+..++||=
T Consensus 229 ~te~------PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF--------------- 287 (327)
T KOG0643|consen 229 TTER------PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF--------------- 287 (327)
T ss_pred eecc------cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc---------------
Confidence 8643 389999999999999887521111 00001111 13444444455666666764
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.+|.+|||+|||+-.+||++||.|||-
T Consensus 288 -----------------------GPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 288 -----------------------GPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred -----------------------cCcceeEECCCCcccccCCCCceEEEE
Confidence 399999999999999999999999983
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-29 Score=267.51 Aligned_cols=297 Identities=14% Similarity=0.144 Sum_probs=248.8
Q ss_pred eCCCeEEeeeccc-CcE------E--EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 112 AQSGVCAAFCRET-NQR------I--CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 112 s~dgtiklW~~~t-G~~------l--~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
-.+.++.++.++. +.. + -++.| |.+-||++.+|.|+..|+|++ . ..++||+..++++.
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~G-HR~dVRsl~vS~d~~~~~Sga----~-------~SikiWn~~t~kci- 407 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGG-HRSDVRSLCVSSDSILLASGA----G-------ESIKIWNRDTLKCI- 407 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeecc-chhheeEEEeecCceeeeecC----C-------CcEEEEEccCccee-
Confidence 5567777877664 222 1 13444 888899999999998777744 2 48999999889983
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
..++. +++-...|- |.+++++.|...|.+.|+|+....++-++. +..||+|+.+|++.-.+++++ |+|||
T Consensus 408 --RTi~~---~y~l~~~Fv-pgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa--DktVk 479 (888)
T KOG0306|consen 408 --RTITC---GYILASKFV-PGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA--DKTVK 479 (888)
T ss_pred --EEecc---ccEEEEEec-CCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC--CcEEE
Confidence 23444 356678896 799999999999999999999999888875 678999999998887777665 58999
Q ss_pred EEecC-----CCeEEEEeec-------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 261 ILSIE-----DGTVLKSFNH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 261 lWdi~-----tG~~L~tl~~-------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+||.+ .|..-+.|.- ....+.+|.++ ||+..|+++=-|.|++|+-+.+-+..-.|-||.-+|.++-.
T Consensus 480 fWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S-pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDI 558 (888)
T KOG0306|consen 480 FWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS-PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDI 558 (888)
T ss_pred EEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc-CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEec
Confidence 99863 1332222221 23456789987 67777777779999999999999999999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|||+++++|+| |++||+|-++ |.|-++|-+|.+. |.+|.|-|+-.+..|+++ |+.||=||-.
T Consensus 559 S~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDS-----vm~V~F~P~~~~FFt~gK-----------D~kvKqWDg~ 622 (888)
T KOG0306|consen 559 SPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDS-----VMSVQFLPKTHLFFTCGK-----------DGKVKQWDGE 622 (888)
T ss_pred cCCcCeEEeccCCCceEEeccccchhhhhhhcccCc-----eeEEEEcccceeEEEecC-----------cceEEeechh
Confidence 99999999999 9999999999 9999999999987 999999999999999988 7999999988
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.-+++++|.+|.. .|++++.+|+|.+++|+|.|.+||+|.
T Consensus 623 kFe~iq~L~~H~~--------------------------------------ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 623 KFEEIQKLDGHHS--------------------------------------EVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred hhhhheeeccchh--------------------------------------eeeeeEEcCCCCeEEeccCCceeEeee
Confidence 8899999999972 899999999999999999999999995
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=245.79 Aligned_cols=233 Identities=15% Similarity=0.249 Sum_probs=201.5
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.+..|.|. .||++..+++.|+|||||+...|.++++.. +++|.+++.+- +.+++ + ..+|+.+.+||++||+
T Consensus 17 qgaV~avryN-~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~-s--~GgDk~v~vwDV~TGk 92 (307)
T KOG0316|consen 17 QGAVRAVRYN-VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFA-S--CGGDKAVQVWDVNTGK 92 (307)
T ss_pred ccceEEEEEc-cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccc-c--CCCCceEEEEEcccCe
Confidence 3556789997 899999999999999999999999998875 67999999994 55554 3 3566999999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC--CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t--g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
.++.|.+|.+.+..|.|.+ +...+++++.|.++|+||.++ .++++++..-.+.|.++... +..+++|| |||++.
T Consensus 93 v~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRt 169 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRT 169 (307)
T ss_pred eeeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEE
Confidence 9999999999999999974 345677789999999999886 47899998888999999764 56789999 999999
Q ss_pred EeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 346 WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 346 Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+|++ |++.-..-||. |++|.|||||+....+|. |+||||-|-.|||+|+..+||.+-
T Consensus 170 ydiR~G~l~sDy~g~p-------it~vs~s~d~nc~La~~l-----------~stlrLlDk~tGklL~sYkGhkn~---- 227 (307)
T KOG0316|consen 170 YDIRKGTLSSDYFGHP-------ITSVSFSKDGNCSLASSL-----------DSTLRLLDKETGKLLKSYKGHKNM---- 227 (307)
T ss_pred EEeecceeehhhcCCc-------ceeEEecCCCCEEEEeec-----------cceeeecccchhHHHHHhcccccc----
Confidence 9997 99988888886 999999999999999998 799999999999999999999840
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+ .=....|+.--..++|||+||.|.+||+
T Consensus 228 ----------------------------e----ykldc~l~qsdthV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 228 ----------------------------E----YKLDCCLNQSDTHVFSGSEDGKVYFWDL 256 (307)
T ss_pred ----------------------------e----eeeeeeecccceeEEeccCCceEEEEEe
Confidence 1 1223567777788999999999999985
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-29 Score=245.69 Aligned_cols=279 Identities=10% Similarity=0.104 Sum_probs=226.6
Q ss_pred cccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcE--EEEeecCCcccEEEEEEeeCCCEEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR--ICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~--l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
+...|...++.+-|.|. |..+|+++.|+.|-||+.. |.| .-++++ |.+.|..|-|++||..|.
T Consensus 42 ~l~gh~geI~~~~F~P~-------------gs~~aSgG~Dr~I~LWnv~-gdceN~~~lkg-HsgAVM~l~~~~d~s~i~ 106 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPD-------------GSCFASGGSDRAIVLWNVY-GDCENFWVLKG-HSGAVMELHGMRDGSHIL 106 (338)
T ss_pred hcCCCcceEEEEEECCC-------------CCeEeecCCcceEEEEecc-ccccceeeecc-ccceeEeeeeccCCCEEE
Confidence 33445555555555555 9999999999999999965 554 335666 999999999999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl 231 (485)
++|. | ++++.||+++|+.. +.+ ++..-+..+.=...+-+++.|++.|+|+||||+.+..+++++
T Consensus 107 S~gt----D------k~v~~wD~~tG~~~-----rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 107 SCGT----D------KTVRGWDAETGKRI-----RKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred EecC----C------ceEEEEecccceee-----ehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc
Confidence 9774 4 69999999999983 332 222322233322234578899999999999999988888888
Q ss_pred cC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-
Q 011452 232 SD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN- 309 (485)
Q Consensus 232 ~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t- 309 (485)
.. ..+.+|.|.+.+.-.+++. =|+.||+||+..+.++.++.||.+.|..+..+ +.|..+++-+.|.|+++||++-
T Consensus 172 ~~kyqltAv~f~d~s~qv~sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls-~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 172 ENKYQLTAVGFKDTSDQVISGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLS-RYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred ccceeEEEEEecccccceeecc--ccCceeeeccccCcceEEeecccCceeeEEec-cCCCccccccccceEEEEEeccc
Confidence 64 5899999997544445543 34789999999999999999999999999886 7899999999999999999983
Q ss_pred ---CeeEEecccCCC----ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 310 ---FELTEVSRTEFM----TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 310 ---g~~~~~l~gh~~----~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..|+.++.||.. ..-..++||+++.+..++ |+.+-+||.. -.+++-|.||.+. |+.++|.|...+|
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gs-----vn~~~Fhp~e~ii 323 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGS-----VNEVDFHPTEPII 323 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCccee-----EEEeeecCCCcEE
Confidence 467889888754 334578999999999999 9999999997 5899999999987 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEE
Q 011452 381 ISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIkl 402 (485)
.|++. |.||.|
T Consensus 324 ls~~s-----------dk~i~l 334 (338)
T KOG0265|consen 324 LSCSS-----------DKTIYL 334 (338)
T ss_pred EEecc-----------CceeEe
Confidence 99986 799877
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-28 Score=239.33 Aligned_cols=230 Identities=14% Similarity=0.190 Sum_probs=195.0
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC---CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~---g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
+...+++|+|.|.-|.+|||||.|++||+|++.. ..|...+ |...|++||+||.+++|+++| .|.|+-||.=
T Consensus 13 h~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS--FD~t~~Iw~k 90 (312)
T KOG0645|consen 13 HKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS--FDATVVIWKK 90 (312)
T ss_pred CCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee--ccceEEEeec
Confidence 4455779999843388999999999999999984 4566666 346899999999777777755 5689999986
Q ss_pred CCC--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 265 EDG--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 265 ~tG--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
++| +|+.+|+||...|++|+|+ .+|.+|++.+.|+.|=||.+..+ +|..+|.+|+..|.-|+|.|-..+|+|+|
T Consensus 91 ~~~efecv~~lEGHEnEVK~Vaws-~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S 169 (312)
T KOG0645|consen 91 EDGEFECVATLEGHENEVKCVAWS-ASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS 169 (312)
T ss_pred CCCceeEEeeeeccccceeEEEEc-CCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec
Confidence 654 6899999999999999997 67899999999999999999854 68889999999999999999999999999
Q ss_pred -CCcEEEEeCC----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 340 -NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 340 -D~TIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
|.|||+|... -+|+++|.+|..- |++++|.|+|+.|+|++. |+||+||-..+ .+
T Consensus 170 YDnTIk~~~~~~dddW~c~~tl~g~~~T-----VW~~~F~~~G~rl~s~sd-----------D~tv~Iw~~~~-----~~ 228 (312)
T KOG0645|consen 170 YDNTIKVYRDEDDDDWECVQTLDGHENT-----VWSLAFDNIGSRLVSCSD-----------DGTVSIWRLYT-----DL 228 (312)
T ss_pred cCCeEEEEeecCCCCeeEEEEecCccce-----EEEEEecCCCceEEEecC-----------CcceEeeeecc-----Cc
Confidence 9999999874 3599999999876 999999999999999986 79999997542 33
Q ss_pred cC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 415 RA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 415 ~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+ |. +.++.|++. .-.|+||+.|+.|+|..
T Consensus 229 ~~~~s--------------------------------------r~~Y~v~W~--~~~IaS~ggD~~i~lf~ 259 (312)
T KOG0645|consen 229 SGMHS--------------------------------------RALYDVPWD--NGVIASGGGDDAIRLFK 259 (312)
T ss_pred chhcc--------------------------------------cceEeeeec--ccceEeccCCCEEEEEE
Confidence 32 21 378889998 45799999999999863
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=259.18 Aligned_cols=258 Identities=12% Similarity=0.152 Sum_probs=190.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcc----cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSS----LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~st----L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
.|+...+++|+..+++++ .+|-- ..+...-++.-..|++....+++. +|...+..|+|+|.|+++||+||.
T Consensus 22 ~i~~~~~~~d~~~~~~~n----~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~-GH~~~V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACN----DRFIAVPWQQLGSTAVLKHTDYGKLASNPPILL-GQEGPIIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeEC----CceEEEEEecCCceEEeeccccccCCCCCceEe-CCCCCEEEEEEcCCCCCEEEEEeC
Confidence 355666666655555544 22100 001122233334565543334454 366778899998438999999999
Q ss_pred CCcEEEeecCCCe-------EEEEEc--CCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 214 DSIYKVFDLKNYT-------MLYSIS--DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 214 D~tiKlWdl~~g~-------~l~tl~--~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
|++|+|||+.++. ++.++. ...|..|+|+|. ..++++++ .|++|+|||+++|+++.++.+|...+.+|
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs--~DgtVrIWDl~tg~~~~~l~~h~~~V~sl 174 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG--ADMVVNVWDVERGKAVEVIKCHSDQITSL 174 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe--CCCEEEEEECCCCeEEEEEcCCCCceEEE
Confidence 9999999997652 455664 458999999984 33444443 45899999999999999999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc-eEEEEEcCCCcEEEEE----e-CCcEEEEeCC--CcEEEE
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT-PSAFIFLYENQLFLTF----R-NRTVAVWNFR--GELVTS 355 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~-v~avaFspdg~llaS~----s-D~TIklWd~~--G~ll~t 355 (485)
+|+ |++..|++++.|++|+|||+++++++..+.+|... +..+.|.|++.+++++ + |++|+|||++ .+.+.+
T Consensus 175 a~s-pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~ 253 (493)
T PTZ00421 175 EWN-LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYST 253 (493)
T ss_pred EEE-CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeE
Confidence 997 67888889999999999999999999999899764 4467899998888764 3 7899999995 456666
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+..|.. ..+....|+||+++|++++.. |++|++||+.+++++..+...
T Consensus 254 ~~~d~~----~~~~~~~~d~d~~~L~lggkg----------Dg~Iriwdl~~~~~~~~~~~~ 301 (493)
T PTZ00421 254 VDLDQS----SALFIPFFDEDTNLLYIGSKG----------EGNIRCFELMNERLTFCSSYS 301 (493)
T ss_pred eccCCC----CceEEEEEcCCCCEEEEEEeC----------CCeEEEEEeeCCceEEEeecc
Confidence 554432 126678899999999998752 799999999999988876543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=249.08 Aligned_cols=319 Identities=13% Similarity=0.136 Sum_probs=248.1
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEee--cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~--g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
=|.+|.|+ |..+|+.+.||++-+||=++|+.++.|. .+|.+.|.+|+|+||++.++|+|+| +++||
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD----------kt~KI 261 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD----------KTIKI 261 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC----------ceEEE
Confidence 37778888 9999999999999999999999999986 2489999999999999999999964 59999
Q ss_pred eEeccCCcCcccc------------eeee---------------------------ccccCceEEEEeCCCCeEEEEeeC
Q 011452 173 EYIRRGKPDAGFA------------LFES---------------------------ESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 173 w~i~~G~~~~~~~------------lf~~---------------------------~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
||+.++++...++ ||+. +|.+.+.++.-+ |||++|-|||.
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~-~d~~~i~Sgsy 340 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVS-PDGKTIYSGSY 340 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEc-CCCCEEEeecc
Confidence 9998877632111 2221 244445567776 79999999999
Q ss_pred CCcEEEeecCCCeEEE---EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE------------------
Q 011452 214 DSIYKVFDLKNYTMLY---SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS------------------ 272 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~---tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t------------------ 272 (485)
||.|-=||..+|..-. ..|.+.|..++-+..+.+.+.+ .|.++|+-+++.+..-+.
T Consensus 341 DG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g---~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~ 417 (603)
T KOG0318|consen 341 DGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG---WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDG 417 (603)
T ss_pred CceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe---cCCeEEEEecccCcccccceeecCCCceeEEEcCCC
Confidence 9999999998887432 3466789999988755555553 456899887743222111
Q ss_pred -------------eecCC--------cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEc
Q 011452 273 -------------FNHLL--------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFL 329 (485)
Q Consensus 273 -------------l~~~~--------~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFs 329 (485)
|+.+. -....|+++ |++...++|++|+.|+|+.+..+++.+ .+..|...|+.|+||
T Consensus 418 ~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~-~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 418 GTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS-PDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred CEEEEEecCcEEEEecCCcceeeccccccceEEEc-CCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 11110 012356665 778889999999999999999876543 356799999999999
Q ss_pred CCCcEEEEEe-CCcEEEEeCC-CcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 330 YENQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 330 pdg~llaS~s-D~TIklWd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
||+.+||++. .+.|-+||++ .+.... +.=|+.. |+.|++|||.+++|+||. |-+|-||++.
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtak-----I~~~aWsP~n~~vATGSl-----------Dt~Viiysv~ 560 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAK-----INCVAWSPNNKLVATGSL-----------DTNVIIYSVK 560 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceecceeeeeeee-----EEEEEeCCCceEEEeccc-----------cceEEEEEcc
Confidence 9999999999 9999999996 665433 3338776 999999999999999998 7999999996
Q ss_pred C-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 407 T-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 407 T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. .+.+....+|. ..|++|.|- |-.+|+|.+.|-.||+|..
T Consensus 561 kP~~~i~iknAH~--------------------------------------~gVn~v~wl-de~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 561 KPAKHIIIKNAHL--------------------------------------GGVNSVAWL-DESTVVSSGQDANIKVWNV 601 (603)
T ss_pred ChhhheEeccccc--------------------------------------cCceeEEEe-cCceEEeccCcceeEEecc
Confidence 4 45555555665 269999995 5578999999999999973
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=257.96 Aligned_cols=282 Identities=15% Similarity=0.207 Sum_probs=227.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
|.+.|..|-|-++.++|++++ .| +.|++|++.-++.+.-..|- +.++.+..++|+ ++++.+.+++.|
T Consensus 174 h~gev~~v~~l~~sdtlatgg----~D------r~Ik~W~v~~~k~~~~~tLa--Gs~g~it~~d~d-~~~~~~iAas~d 240 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGG----SD------RIIKLWNVLGEKSELISTLA--GSLGNITSIDFD-SDNKHVIAASND 240 (459)
T ss_pred cccccceeEEccCcchhhhcc----hh------hhhhhhhcccchhhhhhhhh--ccCCCcceeeec-CCCceEEeecCC
Confidence 888899999999999999955 45 79999998666643212222 245667789998 677777788899
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 215 SIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
+++++|++.+++++.||.+ +.|.+++|.-+...++++ +.|.|||+||+..+.|.++.-- ......|... +..
T Consensus 241 ~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsg--s~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~---~~~ 314 (459)
T KOG0288|consen 241 KNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSG--SADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS---ISD 314 (459)
T ss_pred Cceeeeeccchhhhhhhcccccceeeehhhccccceeec--cccchhhhhhhhhhheeccccc-cccccceEec---cee
Confidence 9999999999999988865 589999999655546664 4569999999999999998752 1344555543 233
Q ss_pred EEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeE
Q 011452 293 LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (485)
Q Consensus 293 lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~s 370 (485)
++++-.|++||.||++++.+......|. .|.++..+++|..|+|++ |.|+++-|++ -+..++|..-... ..+.++.
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k-~asDwtr 392 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK-CASDWTR 392 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc-cccccce
Confidence 4455699999999999999999888776 999999999999999999 9999999998 4556666532221 1112578
Q ss_pred EEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 371 IYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 371 vafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
+.|||||.|+|.||. ||+|+||++.||||...+.....+
T Consensus 393 vvfSpd~~YvaAGS~-----------dgsv~iW~v~tgKlE~~l~~s~s~------------------------------ 431 (459)
T KOG0288|consen 393 VVFSPDGSYVAAGSA-----------DGSVYIWSVFTGKLEKVLSLSTSN------------------------------ 431 (459)
T ss_pred eEECCCCceeeeccC-----------CCcEEEEEccCceEEEEeccCCCC------------------------------
Confidence 999999999999987 799999999999999999875421
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|++++|+|-|..|++++.++.|.+|.
T Consensus 432 ------~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 432 ------AAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred ------cceEEEEEcCCCchhhcccCCcceEecC
Confidence 1799999999999999999999999994
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=223.49 Aligned_cols=258 Identities=14% Similarity=0.172 Sum_probs=193.2
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
.++.+|++.+|++.. .|.. ...+..++|+ |||+.| ++++.|++|++||+.+++.+..+. +..+..++|+|++
T Consensus 11 ~~v~~~d~~t~~~~~---~~~~--~~~~~~l~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 11 NTISVIDTATLEVTR---TFPV--GQRPRGITLS-KDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred CEEEEEECCCCceEE---EEEC--CCCCCceEEC-CCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 599999998887632 3432 1235679998 788865 677889999999999999887775 3457789999865
Q ss_pred e-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC-CcEEEEECCCCeeEEecccCCCce
Q 011452 246 M-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQILDVRNFELTEVSRTEFMTP 323 (485)
Q Consensus 246 ~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D-~tIkIWDv~tg~~~~~l~gh~~~v 323 (485)
. +++++. .|++|++||+++++++..+..+ .....++|+ |++..+++++.+ ..+.+||..+++++..+... ..+
T Consensus 85 ~~l~~~~~--~~~~l~~~d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~ 159 (300)
T TIGR03866 85 KILYIANE--DDNLVTVIDIETRKVLAEIPVG-VEPEGMAVS-PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD-QRP 159 (300)
T ss_pred CEEEEEcC--CCCeEEEEECCCCeEEeEeeCC-CCcceEEEC-CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC-CCc
Confidence 5 444432 4579999999999999888742 345678886 678888888765 46788899999887654322 356
Q ss_pred EEEEEcCCCcEEE-EEe-CCcEEEEeCC-CcEEEEeecCCCC-CCCC-CeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 324 SAFIFLYENQLFL-TFR-NRTVAVWNFR-GELVTSFEDHLLW-HPDC-NTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 324 ~avaFspdg~lla-S~s-D~TIklWd~~-G~ll~tl~gH~~~-~~~~-~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
..++|+|||++|+ ++. |++|++||++ ++++.+++.+... ++.+ ....++|+|||++++.+.. .++
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~----------~~~ 229 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG----------PAN 229 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC----------CCC
Confidence 7899999999874 555 9999999996 8888877644211 0111 1246899999998765543 157
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec-CC
Q 011452 399 SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RH 477 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~D 477 (485)
+|.+||+.+++.+..+..+. .+++++|+|||+.|++++ .+
T Consensus 230 ~i~v~d~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~g~~l~~~~~~~ 270 (300)
T TIGR03866 230 RVAVVDAKTYEVLDYLLVGQ---------------------------------------RVWQLAFTPDEKYLLTTNGVS 270 (300)
T ss_pred eEEEEECCCCcEEEEEEeCC---------------------------------------CcceEEECCCCCEEEEEcCCC
Confidence 89999999999887764322 678899999999999875 69
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
++|++||.
T Consensus 271 ~~i~v~d~ 278 (300)
T TIGR03866 271 NDVSVIDV 278 (300)
T ss_pred CeEEEEEC
Confidence 99999984
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-28 Score=260.10 Aligned_cols=278 Identities=14% Similarity=0.122 Sum_probs=232.9
Q ss_pred ccccccceEEEEEec-CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 91 FLRKRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 91 ~~~~~s~V~~i~~s~-~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
++-||+.|+.+.++. .++...+-.+.+++|++.|++||+|+.- +-+-+..|=|.+.+|+++- .. +.
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~---~y~l~~~Fvpgd~~Iv~G~----k~------Ge 435 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC---GYILASKFVPGDRYIVLGT----KN------GE 435 (888)
T ss_pred eccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc---ccEEEEEecCCCceEEEec----cC------Cc
Confidence 466999999999993 3333333467899999999999999854 3689999999999988744 33 56
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-----CCeE--EEEE------c-CCc
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-----NYTM--LYSI------S-DKN 235 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-----~g~~--l~tl------~-~~~ 235 (485)
+.+.|+..+.+....+ .|-+.+|+++-+ ||++.+++||.|.|||+||.+ .|+. ..++ . .+.
T Consensus 436 l~vfdlaS~~l~Eti~----AHdgaIWsi~~~-pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~dd 510 (888)
T KOG0306|consen 436 LQVFDLASASLVETIR----AHDGAIWSISLS-PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDD 510 (888)
T ss_pred eEEEEeehhhhhhhhh----ccccceeeeeec-CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEecccc
Confidence 7788887777643222 245677899997 799999999999999999964 1322 1222 2 368
Q ss_pred EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 236 VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 236 V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
|.+|++||++++|+.+ --|.|+||+-+.|-+.--+|=||--+|.+++.+ ||...++++|.|++||||-++=|.|.+.
T Consensus 511 vL~v~~Spdgk~LaVs--LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS-~DSklivTgSADKnVKiWGLdFGDCHKS 587 (888)
T KOG0306|consen 511 VLCVSVSPDGKLLAVS--LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS-PDSKLIVTGSADKNVKIWGLDFGDCHKS 587 (888)
T ss_pred EEEEEEcCCCcEEEEE--eccCeEEEEEecceeeeeeecccccceeEEecc-CCcCeEEeccCCCceEEeccccchhhhh
Confidence 9999999988887764 356899999999988888888999999999976 7777778889999999999999999999
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+-+|++.|.+|-|.|+..+|.|++ |+.||-||-+ =+++++|.+|... |+.++.+|+|.+++|+|.
T Consensus 588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~e-----v~cLav~~~G~~vvs~sh-------- 654 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSE-----VWCLAVSPNGSFVVSSSH-------- 654 (888)
T ss_pred hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchhe-----eeeeEEcCCCCeEEeccC--------
Confidence 999999999999999999999999 9999999996 8999999999987 999999999999999987
Q ss_pred cCCCCeEEEEeC
Q 011452 394 EGNAGSINISNI 405 (485)
Q Consensus 394 ~~~DgtIklWdl 405 (485)
|.+||+|.-
T Consensus 655 ---D~sIRlwE~ 663 (888)
T KOG0306|consen 655 ---DKSIRLWER 663 (888)
T ss_pred ---CceeEeeec
Confidence 799999983
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-29 Score=243.04 Aligned_cols=276 Identities=13% Similarity=0.195 Sum_probs=233.6
Q ss_pred cccceEEEEEe-----cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA-----RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s-----~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
|.-||.+++|+ |=+|+|++.||.--|-+-+||--|-|+.| |.+.||+-.+++|.-.-|++++ | -
T Consensus 13 htrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeg-hkgavw~~~l~~na~~aasaaa----d------f 81 (334)
T KOG0278|consen 13 HTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEG-HKGAVWSATLNKNATRAASAAA----D------F 81 (334)
T ss_pred CCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeec-cCcceeeeecCchhhhhhhhcc----c------c
Confidence 45568888888 88999999999999999999999999998 9999999999999887777665 4 4
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll 248 (485)
+.++|+..+|... .-|++.| -+..|+|+ .|..+|.+|++++.+||+|++..+
T Consensus 82 takvw~a~tgdel---hsf~hkh--ivk~~af~-~ds~~lltgg~ekllrvfdln~p~---------------------- 133 (334)
T KOG0278|consen 82 TAKVWDAVTGDEL---HSFEHKH--IVKAVAFS-QDSNYLLTGGQEKLLRVFDLNRPK---------------------- 133 (334)
T ss_pred hhhhhhhhhhhhh---hhhhhhh--eeeeEEec-ccchhhhccchHHHhhhhhccCCC----------------------
Confidence 7889999999862 2455433 35689998 799999999999999999986411
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
...+.+.+|.+.++.|-|. ..+..+|++.+|+||||||.+||...+++. -.+.|.++-.
T Consensus 134 -------------------App~E~~ghtg~Ir~v~wc-~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEv 192 (334)
T KOG0278|consen 134 -------------------APPKEISGHTGGIRTVLWC-HEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEV 192 (334)
T ss_pred -------------------CCchhhcCCCCcceeEEEe-ccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceee
Confidence 1345567788888888886 346788888999999999999999999885 3458999999
Q ss_pred cCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 329 LYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 329 spdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
++||++|..+--++|+.||.. =+++++++- + |+|.+..++|+-..++.|.. |..+.-+|..|
T Consensus 193 s~dG~ilTia~gssV~Fwdaksf~~lKs~k~---P---~nV~SASL~P~k~~fVaGge-----------d~~~~kfDy~T 255 (334)
T KOG0278|consen 193 SQDGRILTIAYGSSVKFWDAKSFGLLKSYKM---P---CNVESASLHPKKEFFVAGGE-----------DFKVYKFDYNT 255 (334)
T ss_pred ccCCCEEEEecCceeEEeccccccceeeccC---c---cccccccccCCCceEEecCc-----------ceEEEEEeccC
Confidence 999998888778999999995 667776643 2 66999999999999998875 89999999999
Q ss_pred CeEEEEe-cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKI-RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+..+ +||-+ +|.+|.|||||...||||+|||||||.
T Consensus 256 geEi~~~nkgh~g--------------------------------------pVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 256 GEEIGSYNKGHFG--------------------------------------PVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred CceeeecccCCCC--------------------------------------ceEEEEECCCCceeeccCCCceEEEEE
Confidence 9999886 78762 999999999999999999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=259.22 Aligned_cols=228 Identities=11% Similarity=0.096 Sum_probs=178.8
Q ss_pred eeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCe--------EEEEeecCCcc
Q 011452 211 SAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGT--------VLKSFNHLLHR 279 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~--------~L~tl~~~~~~ 279 (485)
|+.+++|+||++.....+.++.+ ..|.+|+|+|. +.++++++ .|++|+|||+.++. ++.++.+|...
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS--~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~ 127 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGS--EDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK 127 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCCccccccccceEEeecCCCc
Confidence 67899999999877777777764 58999999984 44555544 45899999998753 35578899999
Q ss_pred eeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 280 NKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 280 ~~~V~f~~~~~~~l-ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+..|+|+ |++..+ ++++.|++|+|||+++++.+..+. |...|.+++|+|+|++|++++ |++|+|||++ |+++.++
T Consensus 128 V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 128 ISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 9999997 556655 567899999999999998877775 567899999999999999999 9999999996 9999999
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
.+|........++...|+||+++|+|++.+ ..++++|+|||+.+ ++++.++..+..
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d-------~~~~R~VkLWDlr~~~~pl~~~~ld~~---------------- 262 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFS-------KNNMREMKLWDLKNTTSALVTMSIDNA---------------- 262 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcC-------CCCccEEEEEECCCCCCceEEEEecCC----------------
Confidence 999864111113444578999999998863 11236899999984 788877754431
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+......++|..+++|+.|++||+|+.
T Consensus 263 ----------~----------~~L~p~~D~~tg~l~lsGkGD~tIr~~e~ 292 (568)
T PTZ00420 263 ----------S----------APLIPHYDESTGLIYLIGKGDGNCRYYQH 292 (568)
T ss_pred ----------c----------cceEEeeeCCCCCEEEEEECCCeEEEEEc
Confidence 0 14444555667999999999999999974
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-26 Score=251.79 Aligned_cols=255 Identities=12% Similarity=0.080 Sum_probs=190.1
Q ss_pred EeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcC-cc----c
Q 011452 111 LAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD-AG----F 184 (485)
Q Consensus 111 ~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~-~~----~ 184 (485)
|+.+++++||+..+...+.++.+ |...|.+|+|+|+ ++.|||+|. | ++++||+++.+... .. .
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLASgS~----D------gtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILASGSE----D------LTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEEEEeC----C------CeEEEEECCCCCccccccccce
Confidence 66789999999888888888887 8889999999997 789999774 4 59999999765321 00 0
Q ss_pred ceeeeccccCceEEEEeCCCCeE-EEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~-Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
..+. .|...+..|+|+ |++.. ||+++.|++|+|||+.+++.++++. ...|.+++|+|++.++++++ .|++|+||
T Consensus 119 ~~L~-gH~~~V~sVaf~-P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s--~D~~IrIw 194 (568)
T PTZ00420 119 CILK-GHKKKISIIDWN-PMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC--VGKHMHII 194 (568)
T ss_pred EEee-cCCCcEEEEEEC-CCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe--cCCEEEEE
Confidence 1122 345667799998 67764 6899999999999999999887774 46799999999777776654 45899999
Q ss_pred ecCCCeEEEEeecCCcceeEEEEE----ecCCCEEEEEeCCC----cEEEEECCC-CeeEEecc--cCCCceEEEEEcCC
Q 011452 263 SIEDGTVLKSFNHLLHRNKKVDFI----EQFNEKLLVKQENE----NLQILDVRN-FELTEVSR--TEFMTPSAFIFLYE 331 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~~V~f~----~~~~~~lls~s~D~----tIkIWDv~t-g~~~~~l~--gh~~~v~avaFspd 331 (485)
|+.+|+++.++.+|.+.+....+. .++++.|++++.|+ +|+|||+++ ++++.+.. .+...+..+.++++
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 999999999999998765433221 26778899987664 899999995 66666543 23334444556778
Q ss_pred CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 332 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
|.+|++|+ |++|++|++. +. +..|...... ..+.+++|.|+.-+=+.-|
T Consensus 275 g~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~---~p~~g~~f~Pkr~~dv~~c 325 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSC---SPFRSFGFLPKQICDVYKC 325 (568)
T ss_pred CCEEEEEECCCeEEEEEccCCc-EEeecccccC---CCccceEEccccccCchhh
Confidence 99999999 9999999996 54 3434322211 1268999999865444444
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-26 Score=231.34 Aligned_cols=246 Identities=15% Similarity=0.215 Sum_probs=202.6
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
|.. ....+.+++|+ ++|+.|+++++|.+++|+|..+|+.+.++.. ..|.-+.|......++.++...|.|||..++
T Consensus 10 f~~-~~~~i~sl~fs-~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl 87 (311)
T KOG1446|consen 10 FRE-TNGKINSLDFS-DDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSL 87 (311)
T ss_pred ccc-CCCceeEEEec-CCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEe
Confidence 443 34567899998 7999999999999999999999999999975 4899999995444555666667899999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
.+-+.|+.|.||...|.++.-+ |-++..++++.|+|||+||++..+|+-.+. ......+||.|+|-+||.+. ...|
T Consensus 88 ~dNkylRYF~GH~~~V~sL~~s-P~~d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 88 HDNKYLRYFPGHKKRVNSLSVS-PKDDTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred ecCceEEEcCCCCceEEEEEec-CCCCeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEEecCCCeE
Confidence 9999999999999999999986 567999999999999999999999877763 33455688999999999999 5599
Q ss_pred EEEeCC---CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011452 344 AVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 344 klWd~~---G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~ 420 (485)
||+|++ ...-.+|.=... ..+..+.|.|||||++|+-+.. .+-|.|-|.-+|..+.++.+|.+.
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~--~~~ew~~l~FS~dGK~iLlsT~-----------~s~~~~lDAf~G~~~~tfs~~~~~ 231 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDN--DEAEWTDLEFSPDGKSILLSTN-----------ASFIYLLDAFDGTVKSTFSGYPNA 231 (311)
T ss_pred EEEEecccCCCCceeEccCCC--CccceeeeEEcCCCCEEEEEeC-----------CCcEEEEEccCCcEeeeEeeccCC
Confidence 999984 345555532211 1133589999999999998775 688999999999999999998741
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+ .. -+.+|+|||+.+.+|+.||+|++|+.
T Consensus 232 -------------------------~~---------~~-~~a~ftPds~Fvl~gs~dg~i~vw~~ 261 (311)
T KOG1446|consen 232 -------------------------GN---------LP-LSATFTPDSKFVLSGSDDGTIHVWNL 261 (311)
T ss_pred -------------------------CC---------cc-eeEEECCCCcEEEEecCCCcEEEEEc
Confidence 00 12 35789999999999999999999974
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=245.95 Aligned_cols=286 Identities=17% Similarity=0.216 Sum_probs=224.3
Q ss_pred EEeeecccCcEEEEeecCCcccEEEEEEeeCC--CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNN--DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 117 iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg--~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
.+-|+..+--.+. ..|+ .|.+|.|||.- +..++.| -.+.|.+...-.....+.-|. .-
T Consensus 11 ~~~w~~~~~~~~~---ke~~-~vssl~fsp~~P~d~aVt~S------------~rvqly~~~~~~~~k~~srFk----~~ 70 (487)
T KOG0310|consen 11 IRYWRQETFPPVH---KEHN-SVSSLCFSPKHPYDFAVTSS------------VRVQLYSSVTRSVRKTFSRFK----DV 70 (487)
T ss_pred chhhhhhcccccc---cccC-cceeEecCCCCCCceEEecc------------cEEEEEecchhhhhhhHHhhc----cc
Confidence 3456655333222 2244 79999999943 2223433 356676654433322122232 23
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
+.++.|- .||++||.|...|.|||+|.++-..|..+ |+.+|..+.|+| ++++++++ ++|+.+|+||+.++.+..
T Consensus 71 v~s~~fR-~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~--sDd~v~k~~d~s~a~v~~ 147 (487)
T KOG0310|consen 71 VYSVDFR-SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSG--SDDKVVKYWDLSTAYVQA 147 (487)
T ss_pred eeEEEee-cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEec--CCCceEEEEEcCCcEEEE
Confidence 4589997 69999999999999999997764455555 467999999998 77777665 456999999999999977
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR- 349 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~- 349 (485)
.+.+|.+.|.+.++++..+..+++||+||+||+||.++. ..+..+ .|..+|..+.|.|.|+++||++...||+||+.
T Consensus 148 ~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~ 226 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLTT 226 (487)
T ss_pred EecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEecC
Confidence 999999999999999765667777899999999999987 555555 58889999999999999999998899999995
Q ss_pred -CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccc
Q 011452 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 -G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~ 428 (485)
|+++..+..|.-. |.++.+..|++.|+|++- |+-||++|+.+-|.+..+.=.
T Consensus 227 G~qll~~~~~H~Kt-----VTcL~l~s~~~rLlS~sL-----------D~~VKVfd~t~~Kvv~s~~~~----------- 279 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKT-----VTCLRLASDSTRLLSGSL-----------DRHVKVFDTTNYKVVHSWKYP----------- 279 (487)
T ss_pred Cceehhhhhcccce-----EEEEEeecCCceEeeccc-----------ccceEEEEccceEEEEeeecc-----------
Confidence 6788888878765 999999999999999997 799999998877887776542
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEE
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.+|-+++.+||++.+|-|-.||.|-
T Consensus 280 ----------------------------~pvLsiavs~dd~t~viGmsnGlv~ 304 (487)
T KOG0310|consen 280 ----------------------------GPVLSIAVSPDDQTVVIGMSNGLVS 304 (487)
T ss_pred ----------------------------cceeeEEecCCCceEEEecccceee
Confidence 2899999999999999999999874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=230.44 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=214.4
Q ss_pred EEEEEeeCCC-E--EEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCC
Q 011452 140 RSLFYNKNND-S--LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDS 215 (485)
Q Consensus 140 ~sv~~spdg~-~--Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~ 215 (485)
+||-|||.=+ . +|++..||-.+ ++.+-|-++.+++- ...+.+ +...-...|++++....+++.++.||
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G-----~G~L~ile~~~~~g---i~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDG 83 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAG-----NGRLFILEVTDPKG---IQECQSYDTEDGLFDVAWSENHENQVIAASGDG 83 (311)
T ss_pred ceeEecccccchhheeehhhccccc-----CceEEEEecCCCCC---eEEEEeeecccceeEeeecCCCcceEEEEecCc
Confidence 7899999732 2 34444343222 35566666543332 233333 11122346899876667778888899
Q ss_pred cEEEeecCCC-eEEEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 216 IYKVFDLKNY-TMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 216 tiKlWdl~~g-~~l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
++||||+.-. ..+..++ ..+|.+|.+++ ...++++ +-|+|||||+..-++-++||+||...|..++|+|-.+
T Consensus 84 SLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~ 160 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTS---SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIP 160 (311)
T ss_pred eEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEee---ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCC
Confidence 9999996532 3566664 35899999996 4445544 4669999999999999999999999999999998778
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEc-CCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCC
Q 011452 291 EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs-pdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~ 366 (485)
..+++.|.|+++||||++..-....+..|...+.+.-|+ ++-..|+|++ |++||.||++ ...+..|.||...
T Consensus 161 nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A---- 236 (311)
T KOG0277|consen 161 NLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA---- 236 (311)
T ss_pred CeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----
Confidence 888889999999999999643333377899899999997 6788899999 9999999996 7789999999988
Q ss_pred CeeEEEECCC-CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 367 NTNNIYITSD-QDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 367 ~v~svafSpD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|+.|.|||. -.+|||+|. |=|+||||.+.+ -|+.+..-|+
T Consensus 237 -VRkvk~Sph~~~lLaSasY-----------DmT~riw~~~~~ds~~e~~~~Ht-------------------------- 278 (311)
T KOG0277|consen 237 -VRKVKFSPHHASLLASASY-----------DMTVRIWDPERQDSAIETVDHHT-------------------------- 278 (311)
T ss_pred -EEEEecCcchhhHhhhccc-----------cceEEecccccchhhhhhhhccc--------------------------
Confidence 999999996 478999987 799999998744 3555555554
Q ss_pred ccccccchhcccCCeEEEEEcC-CCCEEEEecCCCcEEEcc
Q 011452 445 ASRIRSTVAEALEDITALFYDE-DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fsp-Dg~~LaSgs~DgtVklWd 484 (485)
+.|..+.||+ +...+|+.+.|+++.||+
T Consensus 279 ------------EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 279 ------------EFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ------------eEEeccccccccCceeeecccccceeeec
Confidence 4888888888 567899999999999997
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=222.93 Aligned_cols=277 Identities=12% Similarity=0.180 Sum_probs=227.1
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+..+|..+.|. |.+.++.+.|.|+||||...|-+|+|-.+ |..-|..++.+.|+-.+++++ .| +.+.
T Consensus 16 ~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-hG~EVlD~~~s~Dnskf~s~G----gD------k~v~ 84 (307)
T KOG0316|consen 16 AQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-HGHEVLDAALSSDNSKFASCG----GD------KAVQ 84 (307)
T ss_pred cccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecC-CCceeeeccccccccccccCC----CC------ceEE
Confidence 67889999998 99999999999999999999999999988 777799999999999998855 45 7999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~ss 251 (485)
+||+.+||.+. -|. +|...+..|.|. .+..+++|||.|.++|+||-.+-.
T Consensus 85 vwDV~TGkv~R---r~r-gH~aqVNtV~fN-eesSVv~SgsfD~s~r~wDCRS~s------------------------- 134 (307)
T KOG0316|consen 85 VWDVNTGKVDR---RFR-GHLAQVNTVRFN-EESSVVASGSFDSSVRLWDCRSRS------------------------- 134 (307)
T ss_pred EEEcccCeeee---ecc-cccceeeEEEec-CcceEEEeccccceeEEEEcccCC-------------------------
Confidence 99999999853 344 367778899997 588999999999999999964311
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
-.||++.| .....+.+|... +..+++||.|||+|.+|++.|++..-.-|| +|+++.||+|
T Consensus 135 ----~ePiQild-----------ea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~sDy~g~--pit~vs~s~d 194 (307)
T KOG0316|consen 135 ----FEPIQILD-----------EAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--PITSVSFSKD 194 (307)
T ss_pred ----CCccchhh-----------hhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeehhhcCC--cceeEEecCC
Confidence 02333333 223566666653 456778899999999999999988777676 6999999999
Q ss_pred CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 332 NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|+..+.++ |.|++|-|-+ ||+++++.||....+ -...+|+..-..++|||. ||.|.+||+..+.
T Consensus 195 ~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~ey---kldc~l~qsdthV~sgSE-----------DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEY---KLDCCLNQSDTHVFSGSE-----------DGKVYFWDLVDET 260 (307)
T ss_pred CCEEEEeeccceeeecccchhHHHHHhccccccee---eeeeeecccceeEEeccC-----------CceEEEEEeccce
Confidence 99999999 9999999996 999999999987522 234567777788899886 8999999999999
Q ss_pred EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 410 CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 410 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.+.+++.|.. --|++|+|.|--..+.++.. +.+.+|
T Consensus 261 ~~sk~~~~~~-------------------------------------v~v~dl~~hp~~~~f~~A~~-~~~~~~ 296 (307)
T KOG0316|consen 261 QISKLSVVST-------------------------------------VIVTDLSCHPTMDDFITATG-HGDLFW 296 (307)
T ss_pred eeeeeccCCc-------------------------------------eeEEeeecccCccceeEecC-Cceece
Confidence 9999988762 14899999998888877753 334455
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-27 Score=238.35 Aligned_cols=304 Identities=10% Similarity=0.073 Sum_probs=232.8
Q ss_pred hhhccccccccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcE---EEEeecCCcccEEE
Q 011452 67 FRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQR---ICFLNVTADEVIRS 141 (485)
Q Consensus 67 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~---l~tl~g~~~~~i~s 141 (485)
|.++-|-..+.+++....+.-.--+--|..+|+=+.|| |.+|||+|.|.|+-+|.+.--.. ..|+.+ |...|--
T Consensus 196 ldsvsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvg-h~~~V~y 274 (519)
T KOG0293|consen 196 LDSVSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVG-HSQPVSY 274 (519)
T ss_pred cchhhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeec-ccCceEE
Confidence 33344444444444444332222223378899999999 99999999999999999765444 778888 7778999
Q ss_pred EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEee
Q 011452 142 LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (485)
Q Consensus 142 v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd 221 (485)
|.||||..+|++++.+ ..+++||+.+|.+ +.++.+.+-..+-++++- |||+.+++||.|+++--||
T Consensus 275 i~wSPDdryLlaCg~~----------e~~~lwDv~tgd~---~~~y~~~~~~S~~sc~W~-pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 275 IMWSPDDRYLLACGFD----------EVLSLWDVDTGDL---RHLYPSGLGFSVSSCAWC-PDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred EEECCCCCeEEecCch----------HheeeccCCcchh---hhhcccCcCCCcceeEEc-cCCceeEecCCCCcEEEec
Confidence 9999999999997742 3589999999998 446665433455678896 8999999999999999999
Q ss_pred cCCCeEEEEEcCC---cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC
Q 011452 222 LKNYTMLYSISDK---NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE 298 (485)
Q Consensus 222 l~~g~~l~tl~~~---~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~ 298 (485)
+ +|+.+....+- .|+++|+++||+.+.... .|..|++.+.++-.+......+ +.+.+...+ -++...++.=.
T Consensus 341 l-Dgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~--~d~~i~l~~~e~~~dr~lise~-~~its~~iS-~d~k~~LvnL~ 415 (519)
T KOG0293|consen 341 L-DGNILGNWEGVRDPKVHDLAITYDGKYVLLVT--VDKKIRLYNREARVDRGLISEE-QPITSFSIS-KDGKLALVNLQ 415 (519)
T ss_pred C-CcchhhcccccccceeEEEEEcCCCcEEEEEe--cccceeeechhhhhhhcccccc-CceeEEEEc-CCCcEEEEEcc
Confidence 7 56777777754 499999998666655543 4589999999987776555433 567777765 44555555569
Q ss_pred CCcEEEEECCCCeeEEecccCCCceE--EEEEcC-CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEE
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPS--AFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~--avaFsp-dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf 373 (485)
+.+|++||++...+++...||...-. .-+|-. +..++|||| |+.|.||+.. |+++..|.||..- ||.|++
T Consensus 416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~-----vNcVsw 490 (519)
T KOG0293|consen 416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKT-----VNCVSW 490 (519)
T ss_pred cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcce-----eeEEec
Confidence 99999999998888777778865322 234654 448899999 9999999995 9999999999965 999999
Q ss_pred CC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 374 TS-DQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 374 Sp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+| |-..+||||+ |||||||-..
T Consensus 491 NP~~p~m~ASasD-----------DgtIRIWg~~ 513 (519)
T KOG0293|consen 491 NPADPEMFASASD-----------DGTIRIWGPS 513 (519)
T ss_pred CCCCHHHhhccCC-----------CCeEEEecCC
Confidence 99 5577889886 8999999753
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=242.48 Aligned_cols=274 Identities=13% Similarity=0.118 Sum_probs=219.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
|+.+|-.|.|- .++||+++.|..|++|+...++ ++.+|-| ....|.++.|.++|..++.+|. | ..
T Consensus 174 h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaG-s~g~it~~d~d~~~~~~iAas~----d------~~ 242 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAG-SLGNITSIDFDSDNKHVIAASN----D------KN 242 (459)
T ss_pred cccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhc-cCCCcceeeecCCCceEEeecC----C------Cc
Confidence 44444444444 6999999999999999988666 6778877 5668999999999999988663 4 58
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLL 248 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll 248 (485)
.+||++-.+++.. .+. +|..-+..+.|.- ..-.+++|+.|.|||+||+....|..++. +..+.+|..++ ...
T Consensus 243 ~r~Wnvd~~r~~~---TLs-GHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~--~~~ 315 (459)
T KOG0288|consen 243 LRLWNVDSLRLRH---TLS-GHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI--SDV 315 (459)
T ss_pred eeeeeccchhhhh---hhc-ccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccccccccceEecc--eee
Confidence 9999998777632 222 2444455677752 22338999999999999999999998874 67888888873 333
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC----CceE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF----MTPS 324 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~----~~v~ 324 (485)
+| +..|++||.||+.++.+..+...+ +.+.+|+.+ +++-.+++++.|.|+++.|+++.+..+++.... ...+
T Consensus 316 ~S--gH~DkkvRfwD~Rs~~~~~sv~~g-g~vtSl~ls-~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwt 391 (459)
T KOG0288|consen 316 IS--GHFDKKVRFWDIRSADKTRSVPLG-GRVTSLDLS-MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWT 391 (459)
T ss_pred ee--cccccceEEEeccCCceeeEeecC-cceeeEeec-cCCeEEeeecCCCceeeeecccccEEEEeeccccccccccc
Confidence 33 467799999999999999999875 589999986 677888889999999999999999988875421 2378
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
.+.||||+.++|+|| ||.|+||++. |+|...+...... ..|.+++|+|-|..|++++. ++.+.|
T Consensus 392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~---~aI~s~~W~~sG~~Llsadk-----------~~~v~l 457 (459)
T KOG0288|consen 392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN---AAITSLSWNPSGSGLLSADK-----------QKAVTL 457 (459)
T ss_pred eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC---cceEEEEEcCCCchhhcccC-----------CcceEe
Confidence 899999999999999 9999999995 9998877654321 12899999999999999987 799999
Q ss_pred E
Q 011452 403 S 403 (485)
Q Consensus 403 W 403 (485)
|
T Consensus 458 W 458 (459)
T KOG0288|consen 458 W 458 (459)
T ss_pred c
Confidence 9
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=246.69 Aligned_cols=279 Identities=14% Similarity=0.210 Sum_probs=217.3
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE--eecCCcccEEE-EEEe
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF--LNVTADEVIRS-LFYN 145 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t--l~g~~~~~i~s-v~~s 145 (485)
.++|.++...|+.-+--++..+ +-.|+++|+|||+|+|+-..++.+-+ +.+ |.+.|.. +.|-
T Consensus 3 ~Y~ls~~l~gH~~DVr~v~~~~--------------~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~-~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 3 QYKLSHELEGHKSDVRAVAVTD--------------GVCIISGSRDGTVKVWAKKGKQYLETHAFEG-PKGFIANSICYA 67 (745)
T ss_pred cceeEEEeccCccchheeEecC--------------CeEEeecCCCCceeeeeccCcccccceeccc-Ccceeeccceec
Confidence 4666777777766543333222 46799999999999999775665553 344 6667766 8886
Q ss_pred e-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC
Q 011452 146 K-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 224 (485)
Q Consensus 146 p-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~ 224 (485)
+ ++-.|.+++ -| .++-+|..-.+.+. ..|+++ ..-+-+++.. .++. |+|||.|.|+|||- .
T Consensus 68 e~~~~~l~~g~----~D------~~i~v~~~~~~~P~--~~LkgH--~snVC~ls~~-~~~~-~iSgSWD~TakvW~--~ 129 (745)
T KOG0301|consen 68 ESDKGRLVVGG----MD------TTIIVFKLSQAEPL--YTLKGH--KSNVCSLSIG-EDGT-LISGSWDSTAKVWR--I 129 (745)
T ss_pred cccCcceEeec----cc------ceEEEEecCCCCch--hhhhcc--ccceeeeecC-CcCc-eEecccccceEEec--c
Confidence 4 555577755 44 57778886555552 234444 3445567654 4565 89999999999996 6
Q ss_pred CeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcE
Q 011452 225 YTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 225 g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tI 302 (485)
++|.+++.+| .||+|++=|.+.++++ +.|++||||. .|+++++|.||++-|+.+++.+ +..+++++.|+.|
T Consensus 130 ~~l~~~l~gH~asVWAv~~l~e~~~vTg---saDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~--~~~flScsNDg~I 202 (745)
T KOG0301|consen 130 GELVYSLQGHTASVWAVASLPENTYVTG---SADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLD--DSHFLSCSNDGSI 202 (745)
T ss_pred hhhhcccCCcchheeeeeecCCCcEEec---cCcceeeecc--CCchhhhhccchhheeeeEEec--CCCeEeecCCceE
Confidence 7888888765 7999999998877655 4569999998 5899999999999999999973 5689999999999
Q ss_pred EEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 303 QILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 303 kIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
|+||+ +|+++....||+..|+++...+++++++|++ |+|++||+.. +|++.++=- ...||++.+-++|++++
T Consensus 203 r~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~-e~~q~I~lP-----ttsiWsa~~L~NgDIvv 275 (745)
T KOG0301|consen 203 RLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD-ECVQVITLP-----TTSIWSAKVLLNGDIVV 275 (745)
T ss_pred EEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC-ceEEEEecC-----ccceEEEEEeeCCCEEE
Confidence 99999 7999999999999999999888999999999 9999999977 888877622 22389999999999777
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 382 SYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
-+| ||-||||...
T Consensus 276 g~S------------DG~VrVfT~~ 288 (745)
T KOG0301|consen 276 GGS------------DGRVRVFTVD 288 (745)
T ss_pred ecc------------CceEEEEEec
Confidence 655 7999999865
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=233.91 Aligned_cols=253 Identities=14% Similarity=0.179 Sum_probs=198.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PG 244 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg 244 (485)
..+.|+|++.=.+-+...-|. |-.|+.+|.-. ++.|.+|+.||++||||+ .|++.+++. ...|.+++.- ++
T Consensus 83 ~~leIEYv~~~~aP~pl~~~~--hdDWVSsv~~~---~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n 156 (423)
T KOG0313|consen 83 EILEIEYVEAITAPKPLQCFL--HDDWVSSVKGA---SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKN 156 (423)
T ss_pred heeEEEEEEecCCCCcccccc--chhhhhhhccc---CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecC
Confidence 377888874322211111222 34577777653 688999999999999997 567666664 5678876665 43
Q ss_pred ce--EEEEEcCCCCeeEEEEecCCCeEE----EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC---------
Q 011452 245 IM--LLIFTKASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN--------- 309 (485)
Q Consensus 245 ~~--ll~sss~~~D~tIklWdi~tG~~L----~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t--------- 309 (485)
.. +++++ +.|+|++||-++-|+.. +.-+||-..|.+|+-. +++.+++++|+|.+|+||+..+
T Consensus 157 ~~~~~fvsa--s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~-~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~ 233 (423)
T KOG0313|consen 157 SSSCLFVSA--SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVD-SSGTRFCSGSWDTMLKIWSVETDEEDELESS 233 (423)
T ss_pred CccceEEEe--cCCceEEEEEecCchhhhhHHhHhcccccceeEEEec-CCCCeEEeecccceeeecccCCCcccccccc
Confidence 33 33333 56799999999888753 3345898899999865 6788999999999999999332
Q ss_pred ----------------CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEE
Q 011452 310 ----------------FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNI 371 (485)
Q Consensus 310 ----------------g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sv 371 (485)
+.++-++.||...|.+|.|++ ...+.|+| |.|||.||+. |.++.++.+... .++|
T Consensus 234 s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks------l~~i 306 (423)
T KOG0313|consen 234 SNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS------LNCI 306 (423)
T ss_pred chhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc------eeEe
Confidence 235677899999999999999 56677888 9999999996 999999987653 6899
Q ss_pred EECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe---EEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 372 YITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK---CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 372 afSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk---~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
..+|.-++||+||. |.-|||||-.+|. ..++|.||++
T Consensus 307 ~~~~~~~Ll~~gss-----------dr~irl~DPR~~~gs~v~~s~~gH~n----------------------------- 346 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS-----------DRHIRLWDPRTGDGSVVSQSLIGHKN----------------------------- 346 (423)
T ss_pred ecccccceeeecCC-----------CCceeecCCCCCCCceeEEeeecchh-----------------------------
Confidence 99999999999987 7999999998864 4578999984
Q ss_pred ccchhcccCCeEEEEEcCCCC-EEEEecCCCcEEEccC
Q 011452 449 RSTVAEALEDITALFYDEDRN-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~-~LaSgs~DgtVklWd~ 485 (485)
+|.+|.++|... +|+|||.|+++||||.
T Consensus 347 ---------wVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 347 ---------WVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred ---------hhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 999999999775 5999999999999984
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.9e-26 Score=228.83 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=234.2
Q ss_pred cccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.+++++.+.. .-++ -|..+|.++.|+ |.+||+|.-+|.+++|...+|..-+.+-. .-+-|-=+++.|-+..|+
T Consensus 90 lW~~~~ge~~--~elt--gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~WHp~a~ill 164 (399)
T KOG0296|consen 90 LWDISTGEFA--GELT--GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLKWHPRAHILL 164 (399)
T ss_pred EEEccCCcce--eEec--CCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEEecccccEEE
Confidence 4566666521 1123 388899999999 99999999999999999999999988864 333466789999999998
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
.++. | ..+-.|.|..+.. .++|.. +......=+|. |+||.++++..|+||++||+++|+.++.+.
T Consensus 165 AG~~----D------GsvWmw~ip~~~~---~kv~~G-h~~~ct~G~f~-pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 165 AGST----D------GSVWMWQIPSQAL---CKVMSG-HNSPCTCGEFI-PDGKRILTGYDDGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred eecC----C------CcEEEEECCCcce---eeEecC-CCCCccccccc-CCCceEEEEecCceEEEEecCCCceeEEec
Confidence 7664 4 5889999987433 245553 33333345787 789999999999999999999999999987
Q ss_pred C---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--------cCCcceeEEEEEecCCC--EEEEEeCC
Q 011452 233 D---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--------HLLHRNKKVDFIEQFNE--KLLVKQEN 299 (485)
Q Consensus 233 ~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--------~~~~~~~~V~f~~~~~~--~lls~s~D 299 (485)
+ ..-..+.++-.+.+++.++ .++.+++-+..+|+++..++ .+.+.+.+|.|++..-. ..++|+-|
T Consensus 230 ~~e~~~~~~~~~~~~~~~~~~g~--~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vd 307 (399)
T KOG0296|consen 230 QAEGLELPCISLNLAGSTLTKGN--SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVD 307 (399)
T ss_pred ccccCcCCccccccccceeEecc--CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccccc
Confidence 3 3567788886666666644 45899999999999999888 45556668888643221 23446899
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
|+|-|||+.+..++... .|...|..+.|.+ -.+|++++ ||+|++||.+ |+|+.++.||+.. |..++++||+
T Consensus 308 G~i~iyD~a~~~~R~~c-~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~-----Il~f~ls~~~ 380 (399)
T KOG0296|consen 308 GTIAIYDLAASTLRHIC-EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMG-----ILDFALSPQK 380 (399)
T ss_pred ceEEEEecccchhheec-cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchh-----eeEEEEcCCC
Confidence 99999999998888777 4777899999999 66677777 9999999997 9999999999988 9999999999
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
++++++|. |++.+|+++.
T Consensus 381 ~~vvT~s~-----------D~~a~VF~v~ 398 (399)
T KOG0296|consen 381 RLVVTVSD-----------DNTALVFEVP 398 (399)
T ss_pred cEEEEecC-----------CCeEEEEecC
Confidence 99999996 7999999864
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=236.62 Aligned_cols=278 Identities=13% Similarity=0.133 Sum_probs=233.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeec-------CCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNV-------TADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g-------~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
+.|-|.+..|+ ||+|+++|.||-+.+||--+|+.-+.|.- -++..|.++.||.|.++||++|. |
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsq----D--- 284 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQ----D--- 284 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCc----C---
Confidence 45667777777 99999999999999999999997554421 15678999999999999999775 4
Q ss_pred cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEc
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKIS 242 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafS 242 (485)
+.|++|.|++|++. .-|...|.+-+.++.|| .|+..+.|+|.|.|+||--+++|+|+..+.++ .|+++.|+
T Consensus 285 ---GkIKvWri~tG~Cl---RrFdrAHtkGvt~l~FS-rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft 357 (508)
T KOG0275|consen 285 ---GKIKVWRIETGQCL---RRFDRAHTKGVTCLSFS-RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFT 357 (508)
T ss_pred ---CcEEEEEEecchHH---HHhhhhhccCeeEEEEc-cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEc
Confidence 58999999999994 34655566667799998 67888889999999999999999999988764 79999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeec--CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-- 318 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~--~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-- 318 (485)
++|..+++++ .|+|||+|+..|++|+.||+- ..-.+.+|-..|-..+.++++...+||-|-+++ |+..+.+..
T Consensus 358 ~dG~~iisaS--sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGk 434 (508)
T KOG0275|consen 358 DDGHHIISAS--SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGK 434 (508)
T ss_pred CCCCeEEEec--CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCC
Confidence 8777777755 458999999999999999983 234567888777778999999999999999998 777776632
Q ss_pred -CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 319 -EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 319 -h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
+.+..-+.+.||-|..+-..+ |+.+--+.+. |++-++|.-|.-- |-.++-.|.+.+||||+.
T Consensus 435 REgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkd-----vIGl~HHPHqNllAsYsE---------- 499 (508)
T KOG0275|consen 435 REGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKD-----VIGLTHHPHQNLLASYSE---------- 499 (508)
T ss_pred ccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeeccccc-----ccccccCcccchhhhhcc----------
Confidence 344555667999999999888 9998888884 9999999999866 889999999999999997
Q ss_pred CCCeEEEEe
Q 011452 396 NAGSINISN 404 (485)
Q Consensus 396 ~DgtIklWd 404 (485)
||++|||.
T Consensus 500 -DgllKLWk 507 (508)
T KOG0275|consen 500 -DGLLKLWK 507 (508)
T ss_pred -cchhhhcC
Confidence 79999994
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.9e-26 Score=241.20 Aligned_cols=269 Identities=14% Similarity=0.122 Sum_probs=226.8
Q ss_pred EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEee
Q 011452 142 LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (485)
Q Consensus 142 v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd 221 (485)
+.+|..| .||.+.. ..+.||+-.+|+. ..|+..+ ...+.+|.++ ++|.+||.|-.+++|.|||
T Consensus 183 ldWss~n-~laValg-----------~~vylW~~~s~~v---~~l~~~~-~~~vtSv~ws-~~G~~LavG~~~g~v~iwD 245 (484)
T KOG0305|consen 183 LDWSSAN-VLAVALG-----------QSVYLWSASSGSV---TELCSFG-EELVTSVKWS-PDGSHLAVGTSDGTVQIWD 245 (484)
T ss_pred hhcccCC-eEEEEec-----------ceEEEEecCCCce---EEeEecC-CCceEEEEEC-CCCCEEEEeecCCeEEEEe
Confidence 3456444 5666552 6899999988886 3466653 3567799998 7999999999999999999
Q ss_pred cCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecCCCEEEEEe
Q 011452 222 LKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 222 l~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
.++.+.+.++.. ..|-++++.. ..++++ +.|+.|..+|+..++.+.. +.+|...|-.+.|+ +|+.++++|+
T Consensus 246 ~~~~k~~~~~~~~h~~rvg~laW~~--~~lssG--sr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws-~d~~~lASGg 320 (484)
T KOG0305|consen 246 VKEQKKTRTLRGSHASRVGSLAWNS--SVLSSG--SRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS-PDGNQLASGG 320 (484)
T ss_pred hhhccccccccCCcCceeEEEeccC--ceEEEe--cCCCcEEEEEEecchhhhhhhhcccceeeeeEEC-CCCCeeccCC
Confidence 998887776644 5799999993 344443 4568999999999888776 88999999999997 7889999999
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEE
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sva 372 (485)
.|+.+.|||....+.+..+.+|...|.|++|+| ...+||||+ |++||+||.. |+++.+..... .|.+|.
T Consensus 321 nDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs------QVcsL~ 394 (484)
T KOG0305|consen 321 NDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS------QVCSLI 394 (484)
T ss_pred CccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC------ceeeEE
Confidence 999999999998899999999999999999998 667888885 9999999995 99998876543 289999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccch
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTV 452 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (485)
|+|..+-|+++-. -.++-|.||+..+-+.++.+.||+.
T Consensus 395 Wsk~~kEi~sthG---------~s~n~i~lw~~ps~~~~~~l~gH~~--------------------------------- 432 (484)
T KOG0305|consen 395 WSKKYKELLSTHG---------YSENQITLWKYPSMKLVAELLGHTS--------------------------------- 432 (484)
T ss_pred EcCCCCEEEEecC---------CCCCcEEEEeccccceeeeecCCcc---------------------------------
Confidence 9999988888653 2457899999999999999999983
Q ss_pred hcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 453 AEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 453 ~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|..|+.||||..|+||+.|.|+|+|+.
T Consensus 433 -----RVl~la~SPdg~~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 433 -----RVLYLALSPDGETIVTGAADETLRFWNL 460 (484)
T ss_pred -----eeEEEEECCCCCEEEEecccCcEEeccc
Confidence 8999999999999999999999999974
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-25 Score=212.53 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=229.3
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe------EeccCCcCcccc---eeee--ccccCc
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE------YIRRGKPDAGFA---LFES--ESLKWP 195 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw------~i~~G~~~~~~~---lf~~--~~~~~~ 195 (485)
++.+|.- ...||+|+|.|+|...|.+|. - +|.+|. +++.+..-+-++ +|+. -+.+.+
T Consensus 25 ~i~~l~d--sqairav~fhp~g~lyavgsn----s------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsi 92 (350)
T KOG0641|consen 25 AINILED--SQAIRAVAFHPAGGLYAVGSN----S------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSI 92 (350)
T ss_pred EEEEecc--hhheeeEEecCCCceEEeccC----C------ceEEEEccccccCcccccccccCCCeEEeeeccccCccE
Confidence 4555543 457999999999999988764 2 355554 333333211122 4443 255667
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-------EEEEEcCCcEEEEEEc--C--CceEEEEEcCCCCeeEEEEec
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSISDKNVQEIKIS--P--GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-------~l~tl~~~~V~~VafS--p--g~~ll~sss~~~D~tIklWdi 264 (485)
..++++ |.|++||+||.|++||+--.+.-+ +.+..|+..|++++|- | ++.+|+++.+ +|..|.+=|-
T Consensus 93 yc~~ws-~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc 170 (350)
T KOG0641|consen 93 YCTAWS-PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDC 170 (350)
T ss_pred EEEEec-CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeec
Confidence 789998 899999999999999997665433 3466678899999998 3 7888887654 6789999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-------CCCceEEEEEcCCCcEEEE
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-------EFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-------h~~~v~avaFspdg~llaS 337 (485)
.+|+.++.+.||++++.++.- -.+-.+++++.|+|||.||++-..|+.++.. +...|.+|+..|.|++|+|
T Consensus 171 ~~g~~~~a~sghtghilalys--wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s 248 (350)
T KOG0641|consen 171 GRGQGFHALSGHTGHILALYS--WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS 248 (350)
T ss_pred CCCCcceeecCCcccEEEEEE--ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence 999999999999999988764 3366777789999999999999999988743 2357999999999999999
Q ss_pred Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 338 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 338 ~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+- |....|+|++ |..++.|--|... |+.|.|||.-.||.++|. |..|||=|++ |.+-+.|.
T Consensus 249 g~~dssc~lydirg~r~iq~f~phsad-----ir~vrfsp~a~yllt~sy-----------d~~ikltdlq-gdla~el~ 311 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRMIQRFHPHSAD-----IRCVRFSPGAHYLLTCSY-----------DMKIKLTDLQ-GDLAHELP 311 (350)
T ss_pred ccCCCceEEEEeeCCceeeeeCCCccc-----eeEEEeCCCceEEEEecc-----------cceEEEeecc-cchhhcCc
Confidence 99 9999999998 8899999999877 999999999999999998 7999999976 65433331
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
- -.++|+-..+-.+-|.|..--.+|.|.|+|+.||-
T Consensus 312 ~---------------------------------~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa 347 (350)
T KOG0641|consen 312 I---------------------------------MVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWA 347 (350)
T ss_pred e---------------------------------EEEEeccCceEEEEecCccceeeeccCcceEEEec
Confidence 1 01122223566789999999999999999999995
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=250.75 Aligned_cols=242 Identities=14% Similarity=0.177 Sum_probs=195.5
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC--------------------------------C---e--------
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--------------------------------Y---T-------- 226 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~--------------------------------g---~-------- 226 (485)
.|-+.|++..|| +||++||+|++|+.||||.+.. . .
T Consensus 265 ah~gaIw~mKFS-~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFS-HDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeC-CCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 356778899998 8999999999999999998766 0 0
Q ss_pred ---E------EEEE----------cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe
Q 011452 227 ---M------LYSI----------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (485)
Q Consensus 227 ---~------l~tl----------~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~ 287 (485)
+ ...| |...|.++.+|.++.||++ +.|+|||||++..-+||++|. |..-|.+|+|.|
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSS---SMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnP 419 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSS---SMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNP 419 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCCeeEec---cccccEEeecCCCcceeeEEe-cCCeeEEEEecc
Confidence 0 0111 1236999999999999976 577999999999999999998 578899999999
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC-cEEEEeecCCC--C-
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-ELVTSFEDHLL--W- 362 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G-~ll~tl~gH~~--~- 362 (485)
-|+.++++|+-|+-||||++...+......-| .-|+|++|.|||+..+-|+ +|.+++++.+| +++..+.=|.. .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk 498 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK 498 (712)
T ss_pred cCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence 99999999999999999999988877666555 6899999999999999999 99999999985 45554432211 0
Q ss_pred CCCCCeeEEEECCCCC--EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 363 HPDCNTNNIYITSDQD--LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 363 ~~~~~v~svafSpDG~--~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
.....|.++.|.|..- +|++. +|.-|||.|+.+-+++.+|+|+.+.
T Consensus 499 ~~~~rITG~Q~~p~~~~~vLVTS------------nDSrIRI~d~~~~~lv~KfKG~~n~-------------------- 546 (712)
T KOG0283|consen 499 KQGKRITGLQFFPGDPDEVLVTS------------NDSRIRIYDGRDKDLVHKFKGFRNT-------------------- 546 (712)
T ss_pred ccCceeeeeEecCCCCCeEEEec------------CCCceEEEeccchhhhhhhcccccC--------------------
Confidence 0112389999987443 77764 3799999999888999999998741
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+ ..+ .-.|++||+.|++||+|.-|.||++
T Consensus 547 -----~----------SQ~-~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 547 -----S----------SQI-SASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred -----C----------cce-eeeEccCCCEEEEeecCceEEEEeC
Confidence 0 033 4689999999999999999999985
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-26 Score=227.67 Aligned_cols=295 Identities=13% Similarity=0.188 Sum_probs=225.2
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec------------cCCcCcccceeee--ccc
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR------------RGKPDAGFALFES--ESL 192 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~------------~G~~~~~~~lf~~--~~~ 192 (485)
.-++|.. |..++|.-+|||||..+|++|+|. .|+|.|++ .|...+..++..+ +|.
T Consensus 104 Et~ylt~-HK~~cR~aafs~DG~lvATGsaD~----------SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~ 172 (430)
T KOG0640|consen 104 ETKYLTS-HKSPCRAAAFSPDGSLVATGSADA----------SIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHV 172 (430)
T ss_pred ceEEEee-cccceeeeeeCCCCcEEEccCCcc----------eEEEeehhhhhhhcchhhhccCCcccCCceEeehhhcc
Confidence 3456766 888999999999999999988754 67777764 3444444455554 355
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..+..++|. |...+|+|||.|+|||+||...-. ....+. .++|.+|.|+|+|.++..+. .+.+++|+|++|-+
T Consensus 173 devn~l~FH-Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--dHp~~rlYdv~T~Q 249 (430)
T KOG0640|consen 173 DEVNDLDFH-PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--DHPTLRLYDVNTYQ 249 (430)
T ss_pred Ccccceeec-chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--CCCceeEEecccee
Confidence 566689997 789999999999999999986433 234444 37899999999554444322 34799999999999
Q ss_pred EEEEee---cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCC-ceEEEEEcCCCcEEEEEe-CCc
Q 011452 269 VLKSFN---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFM-TPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 269 ~L~tl~---~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~-~v~avaFspdg~llaS~s-D~T 342 (485)
|..+-+ +|.+.+..|.++ +.+...+++|.||.|||||=-+++|++++ +.|.+ .|-+..|..+|++++|++ |.+
T Consensus 250 cfvsanPd~qht~ai~~V~Ys-~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~ 328 (430)
T KOG0640|consen 250 CFVSANPDDQHTGAITQVRYS-STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDST 328 (430)
T ss_pred EeeecCcccccccceeEEEec-CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcce
Confidence 987765 788889999997 44666667899999999999999999987 34654 788888999999999999 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec-CCCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR-ASNGL 420 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~-gH~~~ 420 (485)
||||.+. |.++..+.|-...--..--....|....+|++.-.. ..+++--||-.|+..++.+. ||++
T Consensus 329 vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE----------as~slcsWdaRtadr~~l~slgHn~- 397 (430)
T KOG0640|consen 329 VKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE----------ASNSLCSWDARTADRVALLSLGHNG- 397 (430)
T ss_pred eeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEcccc----------ccCceeeccccchhhhhhcccCCCC-
Confidence 9999994 999999887522100000123456666677776432 13678889999987776653 6763
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+.+.-||.+.-..|+|.|-.+|.|-
T Consensus 398 -------------------------------------a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 398 -------------------------------------AVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred -------------------------------------CceEEEeCCCCCceeeecccceeeeee
Confidence 888999999999999999999999993
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=249.17 Aligned_cols=231 Identities=14% Similarity=0.212 Sum_probs=199.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-----EEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-----MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG- 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-----~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG- 267 (485)
.+--|.|+|++|-+|+.|++||+|+... +. ++.++ |.+||++++..-.+..++|+| .|-|||+|+.+.+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S--sDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS--SDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec--CCceEEEeecccCc
Confidence 3445678999999999999999999753 11 24444 346999999997665566655 4589999999988
Q ss_pred -eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee----------EEecc-cCCCceEEEEEcCCCcEE
Q 011452 268 -TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL----------TEVSR-TEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 268 -~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~----------~~~l~-gh~~~v~avaFspdg~ll 335 (485)
-|+.++..|.+.|.+++..++.++..++||-|+.|.|||+.+|.. ...+. |+...|+++|-.+.|..|
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~i 186 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTII 186 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEE
Confidence 689999999999999999888888899999999999999998832 12233 899999999999999999
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++|+ .+-+++||.+ ++.+..|.||+.- |+.|.+++||..++|+|. ||||||||+...+|++|
T Consensus 187 vsGgtek~lr~wDprt~~kimkLrGHTdN-----Vr~ll~~dDGt~~ls~sS-----------DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 187 VSGGTEKDLRLWDPRTCKKIMKLRGHTDN-----VRVLLVNDDGTRLLSASS-----------DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred EecCcccceEEeccccccceeeeeccccc-----eEEEEEcCCCCeEeecCC-----------CceEEeeeccccceeee
Confidence 9999 9999999996 9999999999965 999999999999999986 89999999999999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
+..|.+ .||++.-+|+=+.+|+|++||.|..=
T Consensus 251 ~~vH~e--------------------------------------~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 251 YIVHKE--------------------------------------GVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred EEeccC--------------------------------------ceEEEeeCCCcceEEecCCCCcEEec
Confidence 999983 89999999999999999999998653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-27 Score=242.49 Aligned_cols=291 Identities=12% Similarity=0.111 Sum_probs=235.1
Q ss_pred cccccCCCCcccccccccccccceEEEEEe---cCEEEEEeCCCeEEeeeccc-CcEEEEeecCCcccEEEEEEeeCCCE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAA---RDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDS 150 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t-G~~l~tl~g~~~~~i~sv~~spdg~~ 150 (485)
.+.+|-|+-+.+. .+- |.-.|.+|-|. +-.|+|++.|+.|+||+... +.|++|+.| |..+|+++.||++|..
T Consensus 197 ~~rc~~Pkk~~~~-~~g--H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~g-H~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 197 EERCYLPKKLSHN-LSG--HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKG-HRKPVRDASFNNCGTS 272 (503)
T ss_pred cceeeccHhheee-ccC--CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhc-chhhhhhhhccccCCe
Confidence 6667777766655 344 77788888887 89999999999999999877 899999998 9999999999999999
Q ss_pred EEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEE
Q 011452 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLY 229 (485)
Q Consensus 151 Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~ 229 (485)
+.|+| .| +.++|||.++|++.. -|..+ .-+..|.|. |++ .++..|..|+.|+.||..+++.++
T Consensus 273 fLS~s----fD------~~lKlwDtETG~~~~---~f~~~--~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvq 336 (503)
T KOG0282|consen 273 FLSAS----FD------RFLKLWDTETGQVLS---RFHLD--KVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQ 336 (503)
T ss_pred eeeee----cc------eeeeeeccccceEEE---EEecC--CCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHH
Confidence 99977 67 899999999999832 34432 345689997 555 888889999999999999999776
Q ss_pred EEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 230 SIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 230 tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
..- -..|.+|.|=|++...+++++ |++++||+...+-.++-.. .++|....|... |.+..+++-+.|+.|-|+.
T Consensus 337 eYd~hLg~i~~i~F~~~g~rFissSD--dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~-P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 337 EYDRHLGAILDITFVDEGRRFISSSD--DKSVRIWENRIPVPIKNIADPEMHTMPCLTLH-PNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHhhhhheeeeEEccCCceEeeecc--CccEEEEEcCCCccchhhcchhhccCcceecC-CCCCeehhhccCceEEEEe
Confidence 653 358999999997777777654 4899999999888776554 334555677765 5455555557999999998
Q ss_pred CCCC---eeEEecccCCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC-CC
Q 011452 307 VRNF---ELTEVSRTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-QD 378 (485)
Q Consensus 307 v~tg---~~~~~l~gh~~--~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-G~ 378 (485)
+... ...+.++||.. ..-.+.|||||.+|+||. ||.+-+||.. -+++.+|..|... +.++.|.|. -.
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~-----ci~v~wHP~e~S 488 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQP-----CIGVDWHPVEPS 488 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcc-----eEEEEecCCCcc
Confidence 6642 34566788864 445578999999999999 9999999996 9999999999766 778999995 46
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.+|+++. ||.||+||
T Consensus 489 kvat~~w-----------~G~Ikiwd 503 (503)
T KOG0282|consen 489 KVATCGW-----------DGLIKIWD 503 (503)
T ss_pred eeEeccc-----------CceeEecC
Confidence 7888877 79999996
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-25 Score=221.52 Aligned_cols=322 Identities=14% Similarity=0.189 Sum_probs=230.9
Q ss_pred cccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCC
Q 011452 84 HCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN 161 (485)
Q Consensus 84 ~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d 161 (485)
-+.+.--+.-|+..|+.|++. +.++.++|-|.|.+||.+++|.||.+..| |.+.|+||.|+|.+++++++|. |
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~G-H~GSVNsikfh~s~~L~lTaSG----D 211 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTG-HTGSVNSIKFHNSGLLLLTASG----D 211 (481)
T ss_pred eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecc-cccceeeEEeccccceEEEccC----C
Confidence 344444556678889999988 77999999999999999999999999988 8999999999999999999884 3
Q ss_pred CcccceeEEEEeEe----ccCCcCcccceeeeccccCceEEEEeCCCCeEEE-E-eeCCCcEEEeecCCCeEEEEEcC--
Q 011452 162 FSSLRCRSTRIEYI----RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT-Y-SAQDSIYKVFDLKNYTMLYSISD-- 233 (485)
Q Consensus 162 ~stL~~~t~~lw~i----~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~La-s-~s~D~tiKlWdl~~g~~l~tl~~-- 233 (485)
.+..||.. +..+.++ ...+.. ...++-++.+..-+- + .++..|||+ .+..|.+
T Consensus 212 ------~taHIW~~av~~~vP~~~a-----~~~hSs-EeE~e~sDe~~~d~d~~~~sD~~tiRv-------Pl~~ltgH~ 272 (481)
T KOG0300|consen 212 ------ETAHIWKAAVNWEVPSNNA-----PSDHSS-EEEEEHSDEHNRDTDSSEKSDGHTIRV-------PLMRLTGHR 272 (481)
T ss_pred ------cchHHHHHhhcCcCCCCCC-----CCCCCc-hhhhhcccccccccccccccCCceeee-------eeeeeeccc
Confidence 47778862 1111111 000000 001221111111110 0 122235543 3444444
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCC-e
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNF-E 311 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg-~ 311 (485)
..|.+..+-.|+.-+++++ .|.|.-|||+|+|+++..|.||.+...-+.-.| .++|++. +.|-|.||||.+-. .
T Consensus 273 ~vV~a~dWL~gg~Q~vTaS--WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~ 348 (481)
T KOG0300|consen 273 AVVSACDWLAGGQQMVTAS--WDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQ 348 (481)
T ss_pred cceEehhhhcCcceeeeee--ccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcc
Confidence 4566666665666666654 558999999999999999999988777665442 6777775 79999999999943 3
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
...++.||++.|.++.|.-|-+ ++|+| |+|||+||++ ...+.|+.-.. . +|-|+++.-+..||---+
T Consensus 349 sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS-~-----~NRvavs~g~~iIAiPhD--- 418 (481)
T KOG0300|consen 349 SVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDS-P-----ANRVAVSKGHPIIAIPHD--- 418 (481)
T ss_pred eeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCC-c-----cceeEeecCCceEEeccC---
Confidence 4677899999999999998876 77888 9999999995 66788876543 2 799999998888887542
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
...|||+|+. |+.|+.|.-.+ +.+ | -.-|++++|.++-
T Consensus 419 --------NRqvRlfDln-G~RlaRlPrts----------Rqg----------H-------------rRMV~c~AW~eeh 456 (481)
T KOG0300|consen 419 --------NRQVRLFDLN-GNRLARLPRTS----------RQG----------H-------------RRMVTCCAWLEEH 456 (481)
T ss_pred --------CceEEEEecC-CCccccCCccc----------ccc----------c-------------ceeeeeeeccccC
Confidence 5789999965 99888886321 000 1 0379999999876
Q ss_pred C--EEEEecCCCcEEEccC
Q 011452 469 N--EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 469 ~--~LaSgs~DgtVklWd~ 485 (485)
. -|.|++.|..|-=|.+
T Consensus 457 p~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 457 PACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred cccccccccccceeeeeEe
Confidence 4 5899999999999963
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=211.59 Aligned_cols=275 Identities=16% Similarity=0.176 Sum_probs=219.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|.-|+.+|-+. ||.|++.+.|.+..+|=-..|++|-|..| |.+.||++..+-+.+.|+|+|+ | .+++
T Consensus 9 HERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G-HtGavW~~Did~~s~~liTGSA----D------~t~k 77 (327)
T KOG0643|consen 9 HERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG-HTGAVWCCDIDWDSKHLITGSA----D------QTAK 77 (327)
T ss_pred CccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC-CCceEEEEEecCCcceeeeccc----c------ceeE
Confidence 34455555555 99999999999999999878999999998 9999999999999999999886 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-----CCCcEEEeecC-------CCeEEEEEc--CCcEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-----QDSIYKVFDLK-------NYTMLYSIS--DKNVQ 237 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-----~D~tiKlWdl~-------~g~~l~tl~--~~~V~ 237 (485)
|||+++||..+ +|.. -..+..|+|+ ++|.+++.+. .-+.|-++|+. .-++++.+. +..+.
T Consensus 78 LWDv~tGk~la---~~k~--~~~Vk~~~F~-~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 78 LWDVETGKQLA---TWKT--NSPVKRVDFS-FGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred EEEcCCCcEEE---Eeec--CCeeEEEeec-cCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999832 3443 3456689998 6887776664 35789999987 344566664 46788
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE-EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVL-KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L-~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
.+-++|-+..++++ ..|+.|.+||+++|+++ .+-+.|.+.+..+.|+ ++...++++|.|.|-||||+.+-+++++.
T Consensus 152 ~a~Wg~l~~~ii~G--he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s-~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGPLGETIIAG--HEDGSISIYDARTGKELVDSDEEHSSKINDLQFS-RDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecccCCEEEEe--cCCCcEEEEEcccCceeeechhhhcccccccccc-CCcceEEecccCccceeeeccceeeEEEe
Confidence 99999944445553 45589999999999665 5557888999999997 78899999999999999999999999999
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe--CC-C------------cEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN--FR-G------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~s-D~TIklWd--~~-G------------~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
.... +|++.+++|-...++-++ ..---+=. .+ | |.+....||-.+ +|+|||+|||+.-
T Consensus 229 ~te~-PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGP-----INsvAfhPdGksY 302 (327)
T KOG0643|consen 229 TTER-PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGP-----INSVAFHPDGKSY 302 (327)
T ss_pred eecc-cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccC-----cceeEECCCCccc
Confidence 7665 899999999888777665 22111111 11 3 346678899988 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+||+. ||.|||--.
T Consensus 303 sSGGE-----------DG~VR~h~F 316 (327)
T KOG0643|consen 303 SSGGE-----------DGYVRLHHF 316 (327)
T ss_pred ccCCC-----------CceEEEEEe
Confidence 98875 899999644
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=210.21 Aligned_cols=298 Identities=14% Similarity=0.117 Sum_probs=238.1
Q ss_pred hhHHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeec-CCcccEE
Q 011452 62 DAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIR 140 (485)
Q Consensus 62 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g-~~~~~i~ 140 (485)
..++.|| .++++|..+.++..++-. |..||++|.|+++++|+++.++++..++. +|...|-
T Consensus 7 ~~~~l~~-----r~~~~~~~~v~Sv~wn~~-------------g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svd 68 (313)
T KOG1407|consen 7 KFKSLKR-----RELQGHVQKVHSVAWNCD-------------GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVD 68 (313)
T ss_pred chhhhhh-----HHhhhhhhcceEEEEccc-------------CceeeecccCCceEEEEecchhhhhhhcccCCCcchh
Confidence 3455555 566777766666665555 99999999999999999998876665533 3666778
Q ss_pred EEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEE
Q 011452 141 SLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (485)
Q Consensus 141 sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKl 219 (485)
-+.+.| +.+.++++|+ | ++|++||+++||+.+ +.+..+-...+.++ |+|++++.+..|..|-.
T Consensus 69 ql~w~~~~~d~~atas~----d------k~ir~wd~r~~k~~~-----~i~~~~eni~i~ws-p~g~~~~~~~kdD~it~ 132 (313)
T KOG1407|consen 69 QLCWDPKHPDLFATASG----D------KTIRIWDIRSGKCTA-----RIETKGENINITWS-PDGEYIAVGNKDDRITF 132 (313)
T ss_pred hheeCCCCCcceEEecC----C------ceEEEEEeccCcEEE-----EeeccCcceEEEEc-CCCCEEEEecCcccEEE
Confidence 888865 4678888774 3 599999999999832 22223333468887 78999999999999999
Q ss_pred eecCCCeEEEEEcC-CcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe
Q 011452 220 FDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 220 Wdl~~g~~l~tl~~-~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
.|..+++.+.+.+. -.|.++.|+ ++.+...+.+ -++|.|.+-..-+.+++++.|...-..|.|. |+|.++++|+
T Consensus 133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~G---lG~v~ILsypsLkpv~si~AH~snCicI~f~-p~GryfA~Gs 208 (313)
T KOG1407|consen 133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNG---LGCVEILSYPSLKPVQSIKAHPSNCICIEFD-PDGRYFATGS 208 (313)
T ss_pred EEecccceeehhcccceeeeeeecCCCCEEEEecC---CceEEEEeccccccccccccCCcceEEEEEC-CCCceEeecc
Confidence 99999988777764 479999999 6777665532 3799999999889999999988777899996 8899999999
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.|-.+-|||++.--|.+.+.-+.-.|..+.||+||++|||+| |.-|-|=+++ |..+.... |... .++||+.|
T Consensus 209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~-----t~tVAWHP 282 (313)
T KOG1407|consen 209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-CEGP-----TFTVAWHP 282 (313)
T ss_pred ccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-ccCC-----ceeEEecC
Confidence 999999999999999999999999999999999999999999 9999999996 99888775 3444 79999999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
..-+||=+|.|...| ..-+.|++||+-+
T Consensus 283 k~~LLAyA~ddk~~d--~~reag~vKiFG~ 310 (313)
T KOG1407|consen 283 KRPLLAYACDDKDGD--SNREAGTVKIFGL 310 (313)
T ss_pred CCceeeEEecCCCCc--cccccceeEEecC
Confidence 999999888632112 0113478888754
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-25 Score=214.73 Aligned_cols=285 Identities=16% Similarity=0.180 Sum_probs=213.7
Q ss_pred CcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecC-CcccEEEEEEeeCCCE-EEEEEeecCC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVT-ADEVIRSLFYNKNNDS-LITVSVYASD 160 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~-~~~~i~sv~~spdg~~-Las~S~d~~~ 160 (485)
.++.-|+||+-.|=. ++.++.+ -+.-.|++-+-++..++.|..++.+ -++.+..|++|++.+. +++++. |
T Consensus 11 GysvqfSPf~~nrLa---vAt~q~y--Gl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G---D 82 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLA---VATAQHY--GLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG---D 82 (311)
T ss_pred cceeEecccccchhh---eeehhhc--ccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec---C
Confidence 456777888544422 2222221 2334677778776546655554443 3457999999998654 555553 3
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEE
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQE 238 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~ 238 (485)
++++|||. +.+..-...|+ ||-.-+.+|.++..+++.++++|.|+|||||+..-++-+.|+.++ -|..
T Consensus 83 -------GSLrl~d~--~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~ 152 (311)
T KOG0277|consen 83 -------GSLRLFDL--TMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQ 152 (311)
T ss_pred -------ceEEEecc--CCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEE
Confidence 49999994 33322123454 466677789998889999999999999999999888888888764 5999
Q ss_pred EEEcC-CceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEe
Q 011452 239 IKISP-GIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEV 315 (485)
Q Consensus 239 VafSp-g~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~ 315 (485)
.+||| ..-+++++ ++|++++|||+.. |+.+. +..|...+.+.+|+-.+...|++++.|++||+||+++- ..+-.
T Consensus 153 a~~sp~~~nlfas~--Sgd~~l~lwdvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~e 229 (311)
T KOG0277|consen 153 AAFSPHIPNLFASA--SGDGTLRLWDVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFE 229 (311)
T ss_pred EecCCCCCCeEEEc--cCCceEEEEEecCCCceeE-EEeccceeEeecccccCCcEEEecCCCceEEEEehhhcccccee
Confidence 99998 44444443 4569999999864 66655 88888888999998655555556789999999999974 46777
Q ss_pred cccCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-C-cEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCC
Q 011452 316 SRTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDD 390 (485)
Q Consensus 316 l~gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d 390 (485)
+.||.-.|..|.|||- -.+|||++ |-|++|||.. + .++.+.+-|+.. |..+.+|+ ++.++||.+.
T Consensus 230 L~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEF-----v~g~Dws~~~~~~vAs~gW----- 299 (311)
T KOG0277|consen 230 LNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEF-----VCGLDWSLFDPGQVASTGW----- 299 (311)
T ss_pred ecCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceE-----EeccccccccCceeeeccc-----
Confidence 8999999999999995 46788999 9999999996 4 377888888877 88898888 6789999988
Q ss_pred CCCcCCCCeEEEEe
Q 011452 391 PLAEGNAGSINISN 404 (485)
Q Consensus 391 ~~~~~~DgtIklWd 404 (485)
|++++||+
T Consensus 300 ------De~l~Vw~ 307 (311)
T KOG0277|consen 300 ------DELLYVWN 307 (311)
T ss_pred ------ccceeeec
Confidence 79999998
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=229.07 Aligned_cols=265 Identities=12% Similarity=0.150 Sum_probs=216.6
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
+++.+....+.||+-.+|+...-... +.+.|.||.|+++|+.||.+- .+ +++.|||+.+.+.. .-+
T Consensus 190 ~laValg~~vylW~~~s~~v~~l~~~-~~~~vtSv~ws~~G~~LavG~----~~------g~v~iwD~~~~k~~---~~~ 255 (484)
T KOG0305|consen 190 VLAVALGQSVYLWSASSGSVTELCSF-GEELVTSVKWSPDGSHLAVGT----SD------GTVQIWDVKEQKKT---RTL 255 (484)
T ss_pred eEEEEecceEEEEecCCCceEEeEec-CCCceEEEEECCCCCEEEEee----cC------CeEEEEehhhcccc---ccc
Confidence 44555677899999999984432223 367899999999999999854 44 69999998655542 112
Q ss_pred eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-E--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-I--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-l--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi 264 (485)
...|...++.+++. +.+|.+|+.|+.|..+|+...+.+.. + |...|-.+++++++..+++ ++.|+.+.|||.
T Consensus 256 ~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lAS--GgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 256 RGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLAS--GGNDNVVFIWDG 330 (484)
T ss_pred cCCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeecc--CCCccceEeccC
Confidence 21145677889984 68999999999999999988775433 4 4568999999987777765 457799999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE-e--
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF-R-- 339 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~-s-- 339 (485)
.+-+.++++..|...|+.++|.|-..+.||+|+ .|++|++||+.+|+++...-.. ..|.+++|++..+-|+++ +
T Consensus 331 ~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-sQVcsL~Wsk~~kEi~sthG~s 409 (484)
T KOG0305|consen 331 LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-SQVCSLIWSKKYKELLSTHGYS 409 (484)
T ss_pred CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-CceeeEEEcCCCCEEEEecCCC
Confidence 888899999999999999999987788888863 9999999999999999887544 489999999988655554 4
Q ss_pred CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 340 D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
+..|.||+.. =+++..|.||... |..++.||||+.|++|+. |.|+|+|++-..
T Consensus 410 ~n~i~lw~~ps~~~~~~l~gH~~R-----Vl~la~SPdg~~i~t~a~-----------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 410 ENQITLWKYPSMKLVAELLGHTSR-----VLYLALSPDGETIVTGAA-----------DETLRFWNLFDE 463 (484)
T ss_pred CCcEEEEeccccceeeeecCCcce-----eEEEEECCCCCEEEEecc-----------cCcEEeccccCC
Confidence 8899999994 8899999999987 999999999999999987 799999998753
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-25 Score=231.11 Aligned_cols=231 Identities=15% Similarity=0.140 Sum_probs=193.5
Q ss_pred cCceEEEEeC--CCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 193 KWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 193 ~~~~~V~Fs~--pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..+.++.|+| |..-. +++| -.+.|++..+-..+.++. ...|.++.|-.||.||+++. ..+-|||+|+.+..
T Consensus 27 ~~vssl~fsp~~P~d~a-Vt~S--~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD--~sG~V~vfD~k~r~ 101 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFA-VTSS--VRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD--ESGHVKVFDMKSRV 101 (487)
T ss_pred CcceeEecCCCCCCceE-Eecc--cEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC--CcCcEEEeccccHH
Confidence 4567899985 22222 3333 478899988777667665 46899999998888887743 44899999988777
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVW 346 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklW 346 (485)
.|..|..|++++..+.|.++++..++++++|+.+|+||+.+...+..+.||++.|.+.+++|... +++||+ ||+||+|
T Consensus 102 iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 102 ILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 89999999999999999988777777789999999999999998668899999999999999766 889999 9999999
Q ss_pred eCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCC
Q 011452 347 NFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAE 423 (485)
Q Consensus 347 d~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~ 423 (485)
|.+ +..+.+|. |..+ |.+|.|-|.|.+|||++. +.||+||+.+|. .+..+..|.
T Consensus 182 DtR~~~~~v~eln-hg~p-----Ve~vl~lpsgs~iasAgG------------n~vkVWDl~~G~qll~~~~~H~----- 238 (487)
T KOG0310|consen 182 DTRSLTSRVVELN-HGCP-----VESVLALPSGSLIASAGG------------NSVKVWDLTTGGQLLTSMFNHN----- 238 (487)
T ss_pred EeccCCceeEEec-CCCc-----eeeEEEcCCCCEEEEcCC------------CeEEEEEecCCceehhhhhccc-----
Confidence 995 67888885 6655 999999999999999985 789999998664 455444476
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|+||.|..|++.|+|||-|+.||++|
T Consensus 239 ---------------------------------KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 239 ---------------------------------KTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred ---------------------------------ceEEEEEeecCCceEeecccccceEEEE
Confidence 2899999999999999999999999987
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-22 Score=188.54 Aligned_cols=322 Identities=17% Similarity=0.284 Sum_probs=241.4
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCc-EEEEeecCCcccEEEEEE-eeCCCEEEEEEeecCCCCcccc
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-RICFLNVTADEVIRSLFY-NKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-~l~tl~g~~~~~i~sv~~-spdg~~Las~S~d~~~d~stL~ 166 (485)
...+...|..+.+. +..++.++.|+.+.+|+...+. .+..+.+.+...+..+.+ ++++..++... +..+
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d----- 133 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLAS--SSLD----- 133 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEecc--CCCC-----
Confidence 34567778888888 8899999999999999988776 777777644446888888 88888444432 2224
Q ss_pred eeEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC-CCcEEEeecCCCeEEEEEcC--CcEEEEEEc
Q 011452 167 CRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD--KNVQEIKIS 242 (485)
Q Consensus 167 ~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~-D~tiKlWdl~~g~~l~tl~~--~~V~~VafS 242 (485)
.++.+|++.. +... ..+. .+...+..++|+ |+++.+++++. |+++++|++.++..+.++.+ ..|..++|+
T Consensus 134 -~~~~~~~~~~~~~~~---~~~~-~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 207 (466)
T COG2319 134 -GTVKLWDLSTPGKLI---RTLE-GHSESVTSLAFS-PDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFS 207 (466)
T ss_pred -ccEEEEEecCCCeEE---EEEe-cCcccEEEEEEC-CCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEc
Confidence 5899999765 3331 1122 234455689998 79999999986 99999999998888887764 689999999
Q ss_pred CCce-EEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEecccC
Q 011452 243 PGIM-LLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL-TEVSRTE 319 (485)
Q Consensus 243 pg~~-ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~-~~~l~gh 319 (485)
|.+. ++++ .+.|++|++||..+++++. .+.+|.... -..|. +++..+++++.|+++++||+..... +..+.+|
T Consensus 208 ~~~~~~~~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 208 PDGGLLIAS--GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFS-PDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred CCcceEEEE--ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeEC-CCCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 8665 4444 3456899999999999999 688876664 33565 5566777789999999999997664 5555788
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+.++.|.|++..+++++ |+++++||.. +....... .|... +..+.|+|++..++.+..
T Consensus 284 ~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------- 348 (466)
T COG2319 284 SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP-----VSSLSFSPDGSLLVSGGS---------- 348 (466)
T ss_pred CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc-----eEEEEECCCCCEEEEeec----------
Confidence 99999999999999999987 9999999996 66565555 77654 889999545456666532
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE-e
Q 011452 396 NAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT-G 474 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS-g 474 (485)
.|+.+++|++.+.........+. .+..+.|++ ...+++ +
T Consensus 349 ~d~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~-~~~~~~~~ 388 (466)
T COG2319 349 DDGTIRLWDLRTGKPLKTLEGHS---------------------------------------NVLSVSFSP-DGRVVSSG 388 (466)
T ss_pred CCCcEEeeecCCCceeEEecCCc---------------------------------------eEEEEEECC-CCCEEEEe
Confidence 26999999998877333333321 378899999 555555 7
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
+.++.+.+|+
T Consensus 389 ~~~~~~~~~~ 398 (466)
T COG2319 389 STDGTVRLWD 398 (466)
T ss_pred cCCCceEEEe
Confidence 9999999997
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-24 Score=223.71 Aligned_cols=274 Identities=15% Similarity=0.213 Sum_probs=213.0
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC------------cccceeee--ccccCceEE
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD------------AGFALFES--ESLKWPGFV 198 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~------------~~~~lf~~--~~~~~~~~V 198 (485)
+.|.-.|.+|+++||+..+.++|-++ ++-=|++.+|+-+ .+.++-.. .|.+++..+
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g----------~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~ 208 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDG----------TILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL 208 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCc----------ceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE
Confidence 44778899999999999999988543 5556777777642 11222222 356667789
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
+.| +||++||+|+.|+-|.|||..+.+.++++.+ +.|.+++|-.|---+.+++ .|.+||+|+++.-..+.||=||
T Consensus 209 avS-~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s--~Drsvkvw~~~~~s~vetlyGH 285 (479)
T KOG0299|consen 209 AVS-SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS--ADRSVKVWSIDQLSYVETLYGH 285 (479)
T ss_pred EEc-CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee--cCCceEEEehhHhHHHHHHhCC
Confidence 998 7999999999999999999999999988865 5899999995433334433 4589999999988888999999
Q ss_pred CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE
Q 011452 277 LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 353 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll 353 (485)
+..+..|+-. .-++.++. +.|.|+|||++ ..+...++++|...+-+++|-.+.. |+||| ||.|.||++. -+.+
T Consensus 286 qd~v~~IdaL--~reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~H-fvsGSdnG~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 286 QDGVLGIDAL--SRERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDEH-FVSGSDNGSIALWSLLKKKPL 361 (479)
T ss_pred ccceeeechh--cccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecccc-eeeccCCceEEEeeecccCce
Confidence 9999999864 35788875 59999999999 4667778899999999999977665 78999 9999999995 6665
Q ss_pred EEee-cCC-----------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEecCCCCC
Q 011452 354 TSFE-DHL-----------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKIRASNGL 420 (485)
Q Consensus 354 ~tl~-gH~-----------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl~gH~~~ 420 (485)
.+.. .|. .| |++||..|..+++||||. +|.||||-+.+| +.+.-|..-.
T Consensus 362 f~~~~AHgv~~~~~~~~~~~W-----itsla~i~~sdL~asGS~-----------~G~vrLW~i~~g~r~i~~l~~ls-- 423 (479)
T KOG0299|consen 362 FTSRLAHGVIPELDPVNGNFW-----ITSLAVIPGSDLLASGSW-----------SGCVRLWKIEDGLRAINLLYSLS-- 423 (479)
T ss_pred eEeeccccccCCccccccccc-----eeeeEecccCceEEecCC-----------CCceEEEEecCCccccceeeecc--
Confidence 5433 222 26 899999999999999997 799999999887 2222221111
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
+...|++|+|+++|+.|+.|-
T Consensus 424 ----------------------------------~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 424 ----------------------------------LVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ----------------------------------cccEEEEEEEccCCCEEEEec
Confidence 013999999999999777663
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.9e-24 Score=206.91 Aligned_cols=276 Identities=13% Similarity=0.163 Sum_probs=225.9
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~ 207 (485)
+++ |...|.||+||-+|..||++| .| +++.+|.+..+++ +++. ++...+..+.+++++-..
T Consensus 16 ~~~-~~~~v~Sv~wn~~g~~lasgs----~d------ktv~v~n~e~~r~-----~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 16 LQG-HVQKVHSVAWNCDGTKLASGS----FD------KTVSVWNLERDRF-----RKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred hhh-hhhcceEEEEcccCceeeecc----cC------CceEEEEecchhh-----hhhhcccCCCcchhhheeCCCCCcc
Confidence 444 677899999999999999966 44 6999999977755 2332 233445567899999999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
+++++.|++|++||...+++...+. +.++ -+.+|| |+..++.. .|.-|-..|+.+-+.+++.+.. -.+..+.
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~---kdD~it~id~r~~~~~~~~~~~-~e~ne~~ 154 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGN---KDDRITFIDARTYKIVNEEQFK-FEVNEIS 154 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEec---CcccEEEEEecccceeehhccc-ceeeeee
Confidence 9999999999999999999988875 3344 467886 55555543 3357788888887777766521 3456788
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
|. .++..+......|+|.|...-.-+.++.+..|.....++.|+|+|++||+|+ |-.+.|||++ --|++.+.-|.-+
T Consensus 155 w~-~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwp 233 (313)
T KOG1407|consen 155 WN-NSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWP 233 (313)
T ss_pred ec-CCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCc
Confidence 87 5677777788889999999999999999999999999999999999999999 9999999996 8899999988755
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|+.|.||-||++|||||. |-.|-|=+++||.-+..++- +.
T Consensus 234 -----VRTlSFS~dg~~lASaSE-----------Dh~IDIA~vetGd~~~eI~~-~~----------------------- 273 (313)
T KOG1407|consen 234 -----VRTLSFSHDGRMLASASE-----------DHFIDIAEVETGDRVWEIPC-EG----------------------- 273 (313)
T ss_pred -----eEEEEeccCcceeeccCc-----------cceEEeEecccCCeEEEeec-cC-----------------------
Confidence 999999999999999987 79999999999999998853 31
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCC---------CcEEEc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH---------GLVHVW 483 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D---------gtVklW 483 (485)
.-.+|+|+|....||=+..| |+||+.
T Consensus 274 ---------------~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 274 ---------------PTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred ---------------CceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence 66789999999999988754 577765
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=224.60 Aligned_cols=291 Identities=16% Similarity=0.210 Sum_probs=211.6
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCc-----EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-----~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
-|.++++. |-.+++||.|-+|++||.+ |. -.+.|.......|+|+.|||.|++|..+|. . -+
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg---~-------aq 237 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG---S-------AQ 237 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecc-cccccchhhhccCcccccccceeeecCCCCeEEEEec---C-------cc
Confidence 35556665 9999999999999999987 54 355677766778999999999999998773 2 27
Q ss_pred EEEeEeccCCc-------Ccccc-eeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEE
Q 011452 170 TRIEYIRRGKP-------DAGFA-LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEI 239 (485)
Q Consensus 170 ~~lw~i~~G~~-------~~~~~-lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~V 239 (485)
++|.| +.|.. |+++. +..+ +|..-+...+|.|-+-..+.++|.|+|+|+||+.+-+ .+..|...
T Consensus 238 akl~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k----- 311 (641)
T KOG0772|consen 238 AKLLD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK----- 311 (641)
T ss_pred eeEEc-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-----
Confidence 78888 67764 12211 1111 2333233567876666677788888888888887543 12222100
Q ss_pred EEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEec
Q 011452 240 KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---LTEVS 316 (485)
Q Consensus 240 afSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---~~~~l 316 (485)
| +. +.--.+..++|+ +++..++++..||.|++||..+.. -..+-
T Consensus 312 ---~---------------------~~--------g~Rv~~tsC~~n-rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk 358 (641)
T KOG0772|consen 312 ---P---------------------AG--------GKRVPVTSCAWN-RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVK 358 (641)
T ss_pred ---c---------------------CC--------CcccCceeeecC-CCcchhhhcccCCceeeeecCCcccccceEee
Confidence 0 00 100123467775 666666777899999999985432 23444
Q ss_pred ccCCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 317 RTEFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 317 ~gh~~--~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
..|.. .+++|+|||||++|||=+ |.++||||++ .++|.+.+|-...-+ -.+++||||.++|++|...+..+
T Consensus 359 ~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~---~tdc~FSPd~kli~TGtS~~~~~- 434 (641)
T KOG0772|consen 359 DAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFP---GTDCCFSPDDKLILTGTSAPNGM- 434 (641)
T ss_pred eccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCC---CCccccCCCceEEEecccccCCC-
Confidence 57877 999999999999999999 9999999995 889998887655422 35789999999999998644332
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 392 LAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
..|++-++|-.|=+.+++|--.+ ..|-.+.|+|-=+.|
T Consensus 435 ----~~g~L~f~d~~t~d~v~ki~i~~--------------------------------------aSvv~~~WhpkLNQi 472 (641)
T KOG0772|consen 435 ----TAGTLFFFDRMTLDTVYKIDIST--------------------------------------ASVVRCLWHPKLNQI 472 (641)
T ss_pred ----CCceEEEEeccceeeEEEecCCC--------------------------------------ceEEEEeecchhhhe
Confidence 35789999999999999885433 267889999999999
Q ss_pred EEecCCCcEEEc
Q 011452 472 YTGNRHGLVHVW 483 (485)
Q Consensus 472 aSgs~DgtVklW 483 (485)
.-|+.||++||+
T Consensus 473 ~~gsgdG~~~vy 484 (641)
T KOG0772|consen 473 FAGSGDGTAHVY 484 (641)
T ss_pred eeecCCCceEEE
Confidence 999999999986
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=237.33 Aligned_cols=289 Identities=12% Similarity=0.112 Sum_probs=222.5
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc----CCc-Ccc--cceeee-ccccCceEEEEe
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR----GKP-DAG--FALFES-ESLKWPGFVEFD 201 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~----G~~-~~~--~~lf~~-~~~~~~~~V~Fs 201 (485)
++-++++..|.||..+|||..+||++. ..| ..+.||.... -+. +.- ..|++. .|.+.+..|.|+
T Consensus 7 ~wv~H~~~~IfSIdv~pdg~~~aTgGq--~~d------~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPDGVKFATGGQ--VLD------GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFS 78 (942)
T ss_pred cccccCCeeEEEEEecCCceeEecCCc--ccc------ccceeeccccccchhhhhhcccchhheeeccccCceeEEEEC
Confidence 344556678999999999999998662 123 3555887510 000 000 113333 466667789998
Q ss_pred CCCCeEEEEeeCCCcEEEeecCC------------------CeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKN------------------YTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~------------------g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
|||++||+||+|+.|-||.... .++..++ |...|.+|++||++.++++.+ .|++|-|
T Consensus 79 -~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s--~DnsVii 155 (942)
T KOG0973|consen 79 -PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS--LDNSVII 155 (942)
T ss_pred -CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec--ccceEEE
Confidence 8999999999999999999772 1134445 456899999999888887765 5689999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC------ceEEEEEcCCCcEE
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM------TPSAFIFLYENQLF 335 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~------~v~avaFspdg~ll 335 (485)
||..+.++++++++|+..|+.|.|- |-|.++++-++|+||+||++.+-.+.+...+++. ....+.|||||++|
T Consensus 156 wn~~tF~~~~vl~~H~s~VKGvs~D-P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 156 WNAKTFELLKVLRGHQSLVKGVSWD-PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred EccccceeeeeeecccccccceEEC-CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCee
Confidence 9999999999999999999999995 6788888889999999999887777777666554 45667889999999
Q ss_pred EEEe--CC---cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC-----CCC------------EEEEEecCCCCCCC
Q 011452 336 LTFR--NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-----DQD------------LIISYCKADSDDPL 392 (485)
Q Consensus 336 aS~s--D~---TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-----DG~------------~LaS~s~d~~~d~~ 392 (485)
+|.. ++ +|.|-+-. .+.-.+|-||... +.-++|+| ..+ .+|+||.
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p-----~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq------- 302 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP-----VEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ------- 302 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeeeeecCCCc-----eEEEEeChHHhccccccCCccCCCcceEEEEEecC-------
Confidence 9985 44 89998885 6777899999988 88999998 122 5667665
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
|++|-||+...-+.+..+ |+- .+ ..|..++|+|||-.|.
T Consensus 303 ----DrSlSVW~T~~~RPl~vi--~~l-----------------------f~------------~SI~DmsWspdG~~Lf 341 (942)
T KOG0973|consen 303 ----DRSLSVWNTALPRPLFVI--HNL-----------------------FN------------KSIVDMSWSPDGFSLF 341 (942)
T ss_pred ----CccEEEEecCCCCchhhh--hhh-----------------------hc------------CceeeeeEcCCCCeEE
Confidence 899999997666665444 431 00 2789999999999999
Q ss_pred EecCCCcEEEc
Q 011452 473 TGNRHGLVHVW 483 (485)
Q Consensus 473 Sgs~DgtVklW 483 (485)
-+|.||+|.+-
T Consensus 342 acS~DGtV~~i 352 (942)
T KOG0973|consen 342 ACSLDGTVALI 352 (942)
T ss_pred EEecCCeEEEE
Confidence 99999999874
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=216.03 Aligned_cols=290 Identities=13% Similarity=0.114 Sum_probs=215.3
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
.|++.-.++|++. ++.+.+.| |.+.||-|+--.--..+.++|+ | +|.+||.+++|++.. .
T Consensus 126 rivssFk~~t~~~------~lvre~~G-HkDGiW~Vaa~~tqpi~gtASA----D------hTA~iWs~Esg~CL~---~ 185 (481)
T KOG0300|consen 126 RIVSSFKDGTVKF------RLVRELEG-HKDGIWHVAADSTQPICGTASA----D------HTARIWSLESGACLA---T 185 (481)
T ss_pred hheeeecCCceeE------eehhhhcc-cccceeeehhhcCCcceeeccc----c------cceeEEeecccccee---e
Confidence 3555556666432 23344555 8889999998776667777665 5 799999999999932 1
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC----CCeEE--EEEcCCcEEEEEEcC-CceEEEEEcCCCC-ee
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTML--YSISDKNVQEIKISP-GIMLLIFTKASGH-VP 258 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~----~g~~l--~tl~~~~V~~VafSp-g~~ll~sss~~~D-~t 258 (485)
+ .+|.+.+.+|+|+ +.|.+++++|.|+|..||... ..+.. ...++ =.++.-|+ +..-.-+ +...| .|
T Consensus 186 Y-~GH~GSVNsikfh-~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSs--EeE~e~sDe~~~d~d~-~~~sD~~t 260 (481)
T KOG0300|consen 186 Y-TGHTGSVNSIKFH-NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSS--EEEEEHSDEHNRDTDS-SEKSDGHT 260 (481)
T ss_pred e-cccccceeeEEec-cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCc--hhhhhccccccccccc-ccccCCce
Confidence 2 2577788899997 799999999999999999732 11100 00110 00111121 1111111 11112 46
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
|++ +|..|++|...+...+|. ..+++++++++|.|..|||+++|+.++.|.||....+-+.-.|..++++|+
T Consensus 261 iRv-------Pl~~ltgH~~vV~a~dWL-~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTs 332 (481)
T KOG0300|consen 261 IRV-------PLMRLTGHRAVVSACDWL-AGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTS 332 (481)
T ss_pred eee-------eeeeeeccccceEehhhh-cCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEe
Confidence 654 788999999999998986 457888889999999999999999999999999999999999999999999
Q ss_pred e-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEe
Q 011452 339 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl 414 (485)
| |.|.+||||+ =.-+..|.||+.. |.++.|.-| +.++|||+ |.|||+||+.+= ..|+||
T Consensus 333 SrDtTFRLWDFReaI~sV~VFQGHtdt-----VTS~vF~~d-d~vVSgSD-----------DrTvKvWdLrNMRsplATI 395 (481)
T KOG0300|consen 333 SRDTTFRLWDFREAIQSVAVFQGHTDT-----VTSVVFNTD-DRVVSGSD-----------DRTVKVWDLRNMRSPLATI 395 (481)
T ss_pred ccCceeEeccchhhcceeeeecccccc-----eeEEEEecC-CceeecCC-----------CceEEEeeeccccCcceee
Confidence 9 9999999996 4468899999987 999999887 56899886 799999999763 467888
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+-.+ .+.-|+.+--+.+||---....|||+|+
T Consensus 396 RtdS---------------------------------------~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 396 RTDS---------------------------------------PANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred ecCC---------------------------------------ccceeEeecCCceEEeccCCceEEEEec
Confidence 7643 5666777777777777777778888773
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-21 Score=186.51 Aligned_cols=302 Identities=16% Similarity=0.283 Sum_probs=225.0
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC-cCcccce
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK-PDAGFAL 186 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~-~~~~~~l 186 (485)
......+..+..+...+ ..+. .|...|.++.|++.+..++.++ .+ ..+.+|+...+. . ...
T Consensus 42 ~~~~~~~~~~~~~~~~~----~~~~-~~~~~i~~~~~~~~~~~~~~~~----~d------~~~~~~~~~~~~~~---~~~ 103 (466)
T COG2319 42 LLALLSDSLVSLPDLSS----LLLR-GHEDSITSIAFSPDGELLLSGS----SD------GTIKLWDLDNGEKL---IKS 103 (466)
T ss_pred EEeecccccccccccch----heee-eccceEEEEEECCCCcEEEEec----CC------CcEEEEEcCCCcee---EEE
Confidence 33444444555554332 1233 3778999999999999988866 33 589999986664 2 112
Q ss_pred eeeccccCceEEEE-eCCCCe-EEEEeeC-CCcEEEeecCC-CeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 187 FESESLKWPGFVEF-DDVNGK-VLTYSAQ-DSIYKVFDLKN-YTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 f~~~~~~~~~~V~F-s~pnG~-~Las~s~-D~tiKlWdl~~-g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
+.......+..+.+ + +++. +++..+. |+++++||+.+ +.....+. ...|..++|+|++..++..+. .|.+++
T Consensus 104 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~ 181 (466)
T COG2319 104 LEGLHDSSVSKLALSS-PDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS-LDGTIK 181 (466)
T ss_pred EeccCCCceeeEEEEC-CCcceEEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC-CCCceE
Confidence 22211112334444 4 5776 6666555 99999999987 66665554 568999999997755544332 479999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEE-ecccCCCceEEEEEcCCCcEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~-~l~gh~~~v~avaFspdg~llaS~ 338 (485)
+|++.+++.+.++.+|...+..++|+ |++..++++ +.|++|++||..+++++. .+.+|...+ --.|+|++.+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 259 (466)
T COG2319 182 LWDLRTGKPLSTLAGHTDPVSSLAFS-PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASG 259 (466)
T ss_pred EEEcCCCceEEeeccCCCceEEEEEc-CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEe
Confidence 99999999999999999999999998 666645555 899999999999999988 788998875 33899999989988
Q ss_pred e-CCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 339 R-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 339 s-D~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+ |+++++|+.. .. ++..+.+|..+ |..+.|+|++..+++++. |+++++||+.++.......
T Consensus 260 ~~d~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~~~~~-----------d~~~~~~~~~~~~~~~~~~ 323 (466)
T COG2319 260 SSDGTIRLWDLRSSSSLLRTLSGHSSS-----VLSVAFSPDGKLLASGSS-----------DGTVRLWDLETGKLLSSLT 323 (466)
T ss_pred cCCCcEEEeeecCCCcEEEEEecCCcc-----EEEEEECCCCCEEEEeeC-----------CCcEEEEEcCCCceEEEee
Confidence 8 9999999996 33 36666788666 999999999999999765 6889999999988887776
Q ss_pred --CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe-cCCCcEEEccC
Q 011452 416 --ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG-NRHGLVHVWSN 485 (485)
Q Consensus 416 --gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg-s~DgtVklWd~ 485 (485)
+|.. .|..+.|.|++..++.+ ..|+.+++|+.
T Consensus 324 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 358 (466)
T COG2319 324 LKGHEG--------------------------------------PVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358 (466)
T ss_pred ecccCC--------------------------------------ceEEEEECCCCCEEEEeecCCCcEEeeec
Confidence 6651 58888885453566666 78899999973
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-24 Score=232.58 Aligned_cols=244 Identities=15% Similarity=0.153 Sum_probs=192.8
Q ss_pred EEEEe-eCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc--Cc-ccceeeeccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 141 SLFYN-KNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DA-GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 141 sv~~s-pdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~--~~-~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
++-.+ |++++|.|++.| .++++|++..-.- .. ...-+++ |..|+..++.- -+|+.|.|+|.|-|
T Consensus 29 ~Lq~da~~~ryLfTgGRD----------g~i~~W~~~~d~~~~s~~~~asme~-HsDWVNDiiL~-~~~~tlIS~SsDtT 96 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD----------GIIRLWSVTQDSNEPSTPYIASMEH-HSDWVNDIILC-GNGKTLISASSDTT 96 (735)
T ss_pred hccccCCCCceEEecCCC----------ceEEEeccccccCCcccchhhhhhh-hHhHHhhHHhh-cCCCceEEecCCce
Confidence 33343 456679997754 4999999733221 11 1234444 67888887775 58999999999999
Q ss_pred EEEeecCCC--eEEEEEc--CCcEEEEEE-cCCceEEEEEcCCCCeeEEEEecCCC--eEEEEee---------cCCcce
Q 011452 217 YKVFDLKNY--TMLYSIS--DKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDG--TVLKSFN---------HLLHRN 280 (485)
Q Consensus 217 iKlWdl~~g--~~l~tl~--~~~V~~Vaf-Spg~~ll~sss~~~D~tIklWdi~tG--~~L~tl~---------~~~~~~ 280 (485)
||||+...+ -|+.+|. .+.|.++|+ -++.-+++++ +-|+.|.|||+++| +++.+|+ |+-..+
T Consensus 97 VK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSg--GLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~si 174 (735)
T KOG0308|consen 97 VKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASG--GLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSI 174 (735)
T ss_pred EEEeecccCcchhHhhhhcccchheeeeecccCceeEEec--CCCccEEEEEccCcchhhhhhccccccccCCCCCccce
Confidence 999998866 4777774 468999999 5788887764 56799999999999 5555553 444556
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
+++|-. +.+..+++|+-.+-||+||.++++.+.-++||++.|.++..++||+.++|+| |+||||||+. .+|++|+.-
T Consensus 175 YSLA~N-~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 175 YSLAMN-QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred eeeecC-CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 677754 4344555678999999999999999999999999999999999999999999 9999999995 899999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEec
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIR 415 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~ 415 (485)
|... ||+++-+|+=+.+.||+. ||.|..=|+.+ .+|...++
T Consensus 254 H~e~-----VWaL~~~~sf~~vYsG~r-----------d~~i~~Tdl~n~~~~tlick 295 (735)
T KOG0308|consen 254 HKEG-----VWALQSSPSFTHVYSGGR-----------DGNIYRTDLRNPAKSTLICK 295 (735)
T ss_pred ccCc-----eEEEeeCCCcceEEecCC-----------CCcEEecccCCchhheEeec
Confidence 9876 999999999999999876 79999888887 45554444
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-25 Score=222.79 Aligned_cols=278 Identities=13% Similarity=0.132 Sum_probs=219.6
Q ss_pred EEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 129 CFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
+.|.| |.+.|.+++=+|+- .++||+|. | +.++||++.+..+ +..|+. |.+-+..+.++ + .-
T Consensus 60 ~~L~g-HrdGV~~lakhp~~ls~~aSGs~----D------G~VkiWnlsqR~~---~~~f~A-H~G~V~Gi~v~--~-~~ 121 (433)
T KOG0268|consen 60 GSLDG-HRDGVSCLAKHPNKLSTVASGSC----D------GEVKIWNLSQREC---IRTFKA-HEGLVRGICVT--Q-TS 121 (433)
T ss_pred hhccc-cccccchhhcCcchhhhhhcccc----C------ceEEEEehhhhhh---hheeec-ccCceeeEEec--c-cc
Confidence 34545 78889999999987 66777664 4 5999999977766 335554 55666778886 3 45
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcCC-cEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
+.++++|+|||+|-+.. ..++++.++ .+..|.-+- +...+++ + ..|-|||.+.-.++.+|+--.+.+.+|.|
T Consensus 122 ~~tvgdDKtvK~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTc-G----e~i~IWD~~R~~Pv~smswG~Dti~svkf 195 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATC-G----EQIDIWDEQRDNPVSSMSWGADSISSVKF 195 (433)
T ss_pred eEEecCCcceeeeeccC-Ccceeeecccccccccccccccccccc-C----ceeeecccccCCccceeecCCCceeEEec
Confidence 67889999999998754 588888764 567777764 4454443 2 47999999988999999855677889999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLW 362 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~ 362 (485)
++--...|++++.|++|-|+|++++.+++-.. -.+..+.++|+|++--|++++ |..+-.+|++ -+.+....||...
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsA 274 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSA 274 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhccccee
Confidence 86444455556799999999999998766542 456889999999999999999 9999999996 7789999999988
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.+|.|||-|+-++|||. |.||||+.+..|..--+. |+
T Consensus 275 -----V~dVdfsptG~Efvsgsy-----------DksIRIf~~~~~~SRdiY--ht------------------------ 312 (433)
T KOG0268|consen 275 -----VMDVDFSPTGQEFVSGSY-----------DKSIRIFPVNHGHSRDIY--HT------------------------ 312 (433)
T ss_pred -----EEEeccCCCcchhccccc-----------cceEEEeecCCCcchhhh--hH------------------------
Confidence 999999999999999998 799999998744322111 22
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
++- +.|.+|.||-|.++|+|||.|+.||||.
T Consensus 313 -kRM----------q~V~~Vk~S~Dskyi~SGSdd~nvRlWk 343 (433)
T KOG0268|consen 313 -KRM----------QHVFCVKYSMDSKYIISGSDDGNVRLWK 343 (433)
T ss_pred -hhh----------heeeEEEEeccccEEEecCCCcceeeee
Confidence 111 3899999999999999999999999995
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-23 Score=222.52 Aligned_cols=321 Identities=15% Similarity=0.149 Sum_probs=240.0
Q ss_pred ccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 95 ~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+++|.++.|. .-++|++...|.+.+||++.-+++..+.-.|.+.|...-|-|.-..|++++.| + .|+.+
T Consensus 244 ~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D---n--Slk~~--- 315 (910)
T KOG1539|consen 244 WGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD---N--SLKVW--- 315 (910)
T ss_pred ccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC---C--ceeEE---
Confidence 5899999999 45667777779999999996666666666688899999999988888887653 2 23322
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEe----------------------------------------
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS---------------------------------------- 211 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~---------------------------------------- 211 (485)
+.|-.+|-+ ...-+..+|...|.++.|-..+|..+.|+
T Consensus 316 vfD~~dg~p--R~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~ 393 (910)
T KOG1539|consen 316 VFDSGDGVP--RLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL 393 (910)
T ss_pred EeeCCCCcc--hheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence 223122211 00011112323333333332333333333
Q ss_pred -------------------------eCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC-CceEEEEEcCCCCe
Q 011452 212 -------------------------AQDSIYKVFDLKNYTM-LYSIS-------DKNVQEIKISP-GIMLLIFTKASGHV 257 (485)
Q Consensus 212 -------------------------s~D~tiKlWdl~~g~~-l~tl~-------~~~V~~VafSp-g~~ll~sss~~~D~ 257 (485)
-.+...+.|++.+.+. .++|. +..+.+|++|+ |+.-+++.+. +
T Consensus 394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~---G 470 (910)
T KOG1539|consen 394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK---G 470 (910)
T ss_pred cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC---C
Confidence 4455566666655443 44443 14788999997 7777766544 6
Q ss_pred eEEEEecCCCeEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 258 PLKILSIEDGTVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 258 tIklWdi~tG~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|-+++++.|-..++| ..|...+..|+.- .-+..+++++.||-++.||..++.++..++- ...+..+.......+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D-~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l-~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVD-GTNRLLVSAGADGILKFWDFKKKVLKKSLRL-GSSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEec-CCCceEEEccCcceEEEEecCCcceeeeecc-CCCcceeeeeehhhh
Confidence 9999999999999999 4777888888752 3466788889999999999999998877642 235677778888999
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
||.+. |-.|.+.|.. -+.++.|.||.+. +++..|||||++|+|+|+ |+|||+||+.||+|+-
T Consensus 549 ~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr-----itd~~FS~DgrWlisasm-----------D~tIr~wDlpt~~lID 612 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVTRKVVREFWGHGNR-----ITDMTFSPDGRWLISASM-----------DSTIRTWDLPTGTLID 612 (910)
T ss_pred hhhhcCceeEEEEEchhhhhhHHhhccccc-----eeeeEeCCCCcEEEEeec-----------CCcEEEEeccCcceee
Confidence 99998 8899999995 8899999999988 999999999999999998 7999999999999998
Q ss_pred EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC-CcEEEccC
Q 011452 413 KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH-GLVHVWSN 485 (485)
Q Consensus 413 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D-gtVklWd~ 485 (485)
-|.-.. ..++|.|||+|..|||...| .-|.+|.|
T Consensus 613 ~~~vd~---------------------------------------~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 613 GLLVDS---------------------------------------PCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred eEecCC---------------------------------------cceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 874322 77899999999999999999 67999976
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-25 Score=240.60 Aligned_cols=219 Identities=13% Similarity=0.252 Sum_probs=191.6
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
..++.++.|+.|..+-||....-.++.++ |...|.+|.|++...|+.+++. ++|||+||++.++.+++|.||+..+
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaagsa--sgtiK~wDleeAk~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSA--SGTIKVWDLEEAKIVRTLTGHLLNI 115 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhccccc--CCceeeeehhhhhhhhhhhccccCc
Confidence 35788999999999999998665555554 5568999999987777766554 4899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
.+|+|+ |.+++.+.++-|..++|||++..-|..+..+|...|..+.|+|||++++++. |.+|||||.. |+++.+|++
T Consensus 116 ~sv~f~-P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 116 TSVDFH-PYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred ceeeec-cceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccc
Confidence 999997 7799998899999999999998899999999999999999999999999999 8999999996 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|... +.++.|.|..-+|++|+. |+||++||++|-+.+-....-
T Consensus 195 ~e~~-----v~sle~hp~e~Lla~Gs~-----------d~tv~f~dletfe~I~s~~~~--------------------- 237 (825)
T KOG0267|consen 195 HEGK-----VQSLEFHPLEVLLAPGSS-----------DRTVRFWDLETFEVISSGKPE--------------------- 237 (825)
T ss_pred cccc-----ccccccCchhhhhccCCC-----------CceeeeeccceeEEeeccCCc---------------------
Confidence 9966 899999999999999886 899999998876655444332
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
+..|.+++|+|||..+++|-.+.
T Consensus 238 -----------------~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 238 -----------------TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred -----------------cCCceeeeecCCceeeecCchhh
Confidence 24899999999999999996543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=209.92 Aligned_cols=240 Identities=14% Similarity=0.170 Sum_probs=191.9
Q ss_pred cccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 011452 90 PFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (485)
Q Consensus 90 ~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~ 167 (485)
.|.-|...|++-... --.-|+++-|=|.|+||..||-.|.++. |...|++++|+.|.+.|.+++ .+
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~--hkhivk~~af~~ds~~lltgg----~e------ 121 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE--HKHIVKAVAFSQDSNYLLTGG----QE------ 121 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh--hhheeeeEEecccchhhhccc----hH------
Confidence 344455556665555 3345788899999999999999999875 677899999999999999965 44
Q ss_pred eEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
+.+||.++.+-+. +.-+- ++.+.+..|.|-. ..+.+.|++.|+|||+||..+|+.+++|. ..+|.++-+|+++
T Consensus 122 kllrvfdln~p~A----pp~E~~ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG 196 (334)
T KOG0278|consen 122 KLLRVFDLNRPKA----PPKEISGHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDG 196 (334)
T ss_pred HHhhhhhccCCCC----CchhhcCCCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCC
Confidence 5788888754443 11111 2445566788874 44566667999999999999999999997 5799999999988
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceE
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPS 324 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~ 324 (485)
.+++.+-+ .+|+.||..+-.+||.++-- -.|.+... .|.-+.+++|++|.-+.-+|..||+.+... .||...|-
T Consensus 197 ~ilTia~g---ssV~Fwdaksf~~lKs~k~P-~nV~SASL-~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVh 271 (334)
T KOG0278|consen 197 RILTIAYG---SSVKFWDAKSFGLLKSYKMP-CNVESASL-HPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVH 271 (334)
T ss_pred CEEEEecC---ceeEEeccccccceeeccCc-cccccccc-cCCCceEEecCcceEEEEEeccCCceeeecccCCCCceE
Confidence 88877554 59999999999999988631 23344444 467789999999999999999999999985 99999999
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-Cc
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GE 351 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ 351 (485)
+|.|+|||.+.|||| ||||+||... |+
T Consensus 272 cVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 272 CVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred EEEECCCCceeeccCCCceEEEEEecCCC
Confidence 999999999999999 9999999986 65
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=213.90 Aligned_cols=268 Identities=13% Similarity=0.142 Sum_probs=212.2
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEe-----------------ecCCcccEEEEEEeeCCCEEE
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFL-----------------NVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl-----------------~g~~~~~i~sv~~spdg~~La 152 (485)
-.|+-+|.+++++ ..+++++|.||+|--|+..+|+-+..+ ...|...|-+++.||||++||
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkyla 218 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLA 218 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEE
Confidence 3466667777777 779999999999999999999955211 114677899999999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
++. .| +.+.||+..+++.. ..|. +|.+.+..++|- ..-.-|-|+|.|++||+|+++.-..+.++.
T Consensus 219 tgg----~d------~~v~Iw~~~t~ehv---~~~~-ghr~~V~~L~fr-~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 219 TGG----RD------RHVQIWDCDTLEHV---KVFK-GHRGAVSSLAFR-KGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred ecC----CC------ceEEEecCcccchh---hccc-ccccceeeeeee-cCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 854 45 68899999998873 3455 366777789996 344567889999999999998766666775
Q ss_pred C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 233 D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 233 ~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
+ ..|.+|....-...++.+ ..|.|++||++.. +..-.|.+|.+.+.+|+|+. ++.+++||+||+|-||++.+.
T Consensus 284 GHqd~v~~IdaL~reR~vtVG--grDrT~rlwKi~e-esqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVG--GRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred CCccceeeechhcccceEEec--cccceeEEEeccc-cceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeeeccc
Confidence 4 578888888777777664 3568999999954 55567888888899999974 688999999999999999988
Q ss_pred eeEEecc-c-----------CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C----cEEEEeecCCCCCCCCCeeEEE
Q 011452 311 ELTEVSR-T-----------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 311 ~~~~~l~-g-----------h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G----~ll~tl~gH~~~~~~~~v~sva 372 (485)
+++.+.+ . +..||++++..|...+||||| ||-||||-++ | +++..+. -..+ ||+|+
T Consensus 359 kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~Gf-----VNsl~ 432 (479)
T KOG0299|consen 359 KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGF-----VNSLA 432 (479)
T ss_pred CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccE-----EEEEE
Confidence 8766541 1 223999999999999999999 9999999995 6 4566554 2334 99999
Q ss_pred ECCCCCEEEEEec
Q 011452 373 ITSDQDLIISYCK 385 (485)
Q Consensus 373 fSpDG~~LaS~s~ 385 (485)
|+++|+.|+.|..
T Consensus 433 f~~sgk~ivagiG 445 (479)
T KOG0299|consen 433 FSNSGKRIVAGIG 445 (479)
T ss_pred EccCCCEEEEecc
Confidence 9999998887753
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=217.39 Aligned_cols=322 Identities=13% Similarity=0.185 Sum_probs=248.1
Q ss_pred eEEEEEe--cCEEEEEeCCCeEEeeeccc----CcEEEEeecCCcccEEEEEEee------CC-----CEEEEEEeecCC
Q 011452 98 IIEIVAA--RDIVFALAQSGVCAAFCRET----NQRICFLNVTADEVIRSLFYNK------NN-----DSLITVSVYASD 160 (485)
Q Consensus 98 V~~i~~s--~~~ias~s~dgtiklW~~~t----G~~l~tl~g~~~~~i~sv~~sp------dg-----~~Las~S~d~~~ 160 (485)
-++.+|. .+-|.....|..+.+||+.. |++-..| +|...||+|--=| .. .-.+|+|. |
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~l--yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs---D 401 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSML--YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS---D 401 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccceeeee--eccceeeeeccccccccCcccccCCccceeEecC---C
Confidence 3556666 89999999999999999764 5655444 6888999987654 11 12567673 4
Q ss_pred CCcccceeEEEEeEeccC---Cc------------------------Ccccceeee------ccccCceEEEEeCCCCeE
Q 011452 161 NFSSLRCRSTRIEYIRRG---KP------------------------DAGFALFES------ESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G---~~------------------------~~~~~lf~~------~~~~~~~~V~Fs~pnG~~ 207 (485)
+ |||||++.-+ +. +++..+|.. +...-+.+|+.+ ||||.
T Consensus 402 ~-------TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vS-p~gqh 473 (1080)
T KOG1408|consen 402 G-------TIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVS-PDGQH 473 (1080)
T ss_pred C-------cEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEEC-CCcce
Confidence 4 9999998442 21 122234443 112224468998 89999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-C--CceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCccee
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-P--GIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRNK 281 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafS-p--g~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~~ 281 (485)
||+|..-|++||+||.+-+.+..+ |..+|.++.|| | +.+||++++ .|.-|.++|+..-- +++|+.+|...+.
T Consensus 474 LAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssIT 551 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSIT 551 (1080)
T ss_pred ecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhccccccee
Confidence 999999999999999876655444 56689999999 7 778887755 55899999986543 4689999999999
Q ss_pred EEEEEecCC-CEEEEEeCCCcEEEEECCC-CeeEEecccC----CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE
Q 011452 282 KVDFIEQFN-EKLLVKQENENLQILDVRN-FELTEVSRTE----FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 353 (485)
Q Consensus 282 ~V~f~~~~~-~~lls~s~D~tIkIWDv~t-g~~~~~l~gh----~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll 353 (485)
+|.|...+. -++++++.|+.|-.=-.+. +.-....++| ..+++.++.-|..+++++++ |+.|+|+|++ |+++
T Consensus 552 svKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~ 631 (1080)
T KOG1408|consen 552 SVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV 631 (1080)
T ss_pred EEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence 999976442 5778888998886543331 1111122222 23788899999999999999 9999999997 9999
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
++|+|.... ++..-.|...|.|-|||+.|. |.|+-+.|.-+|+|+++..||.
T Consensus 632 k~FKgs~~~--eG~lIKv~lDPSgiY~atScs-----------dktl~~~Df~sgEcvA~m~GHs--------------- 683 (1080)
T KOG1408|consen 632 KSFKGSRDH--EGDLIKVILDPSGIYLATSCS-----------DKTLCFVDFVSGECVAQMTGHS--------------- 683 (1080)
T ss_pred eeecccccC--CCceEEEEECCCccEEEEeec-----------CCceEEEEeccchhhhhhcCcc---------------
Confidence 999986543 233678999999999999997 7999999999999999999997
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|+.|-|.+|-+.|+|.|.||-|-||.+
T Consensus 684 -----------------------E~VTG~kF~nDCkHlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 684 -----------------------EAVTGVKFLNDCKHLISVSGDGCIFVWKL 712 (1080)
T ss_pred -----------------------hheeeeeecccchhheeecCCceEEEEEC
Confidence 49999999999999999999999999974
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=218.47 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=230.6
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCc---------------------E-
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ---------------------R- 127 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~---------------------~- 127 (485)
+..-.+.+.|..++++..|..+.. ..-+|||+|+|.+||||.+.-+- .
T Consensus 181 f~~v~el~GH~DWIrsl~f~~~~~----------~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l 250 (764)
T KOG1063|consen 181 FARVAELEGHTDWIRSLAFARLGG----------DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMIL 250 (764)
T ss_pred eeEEEEeeccchhhhhhhhhccCC----------CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeee
Confidence 344466677777777776665511 13479999999999999976433 2
Q ss_pred --EE------EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee----cccc--
Q 011452 128 --IC------FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES----ESLK-- 193 (485)
Q Consensus 128 --l~------tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~----~~~~-- 193 (485)
+. ++.-+|+++|+||-++|.+..|.++|+| .+.-||... -. .-+|.. +..+
T Consensus 251 ~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaD----------ksmiiW~pd-~~----tGiWv~~vRlGe~gg~ 315 (764)
T KOG1063|consen 251 EEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASAD----------KSMIIWKPD-EN----TGIWVDVVRLGEVGGS 315 (764)
T ss_pred eeEEEEEehhhhhcCcccceEEEEEccchhhheecccC----------cceEEEecC-Cc----cceEEEEEEeeccccc
Confidence 22 3444599999999999999888898864 377778631 11 002221 0011
Q ss_pred C--ceEEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce--EEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 194 W--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT--MLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 194 ~--~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~--~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
. -+..-|+ ||+..+.+-+.-|-.++|--++ .. ++..+++ +.|.+|+++|.|.++.+.+ .|+|-||+---
T Consensus 316 a~GF~g~lw~-~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs--~DQTTRlFa~w- 391 (764)
T KOG1063|consen 316 AGGFWGGLWS-PNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS--LDQTTRLFARW- 391 (764)
T ss_pred ccceeeEEEc-CCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec--cccceeeeccc-
Confidence 1 1135687 7999888899999999998332 22 2233344 5899999999555555544 56999997643
Q ss_pred Ce-----EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---------------------------------
Q 011452 267 GT-----VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--------------------------------- 308 (485)
Q Consensus 267 G~-----~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~--------------------------------- 308 (485)
|+ ++..=+-|.+-..+++|.. .+-+++++.+.+-+|+++.-
T Consensus 392 g~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS 470 (764)
T KOG1063|consen 392 GRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS 470 (764)
T ss_pred ccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc
Confidence 22 2222334666677888863 23445555555555655431
Q ss_pred ----------CCe----eEE-----------------------------ecccCCCceEEEEEcCCCcEEEEEe-CC---
Q 011452 309 ----------NFE----LTE-----------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NR--- 341 (485)
Q Consensus 309 ----------tg~----~~~-----------------------------~l~gh~~~v~avaFspdg~llaS~s-D~--- 341 (485)
+|. +.+ -+-||...|++++.+|+|+++||++ -.
T Consensus 471 nKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~e 550 (764)
T KOG1063|consen 471 NKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKE 550 (764)
T ss_pred CCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCcc
Confidence 111 111 1237889999999999999999997 33
Q ss_pred --cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe----EEEEe
Q 011452 342 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK----CLAKI 414 (485)
Q Consensus 342 --TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk----~l~tl 414 (485)
-|+||+.. -..++.|++|.+- |..++|||||++|+|.|. |.|+.||+.+.+. ..+.+
T Consensus 551 hAvI~lw~t~~W~~~~~L~~HsLT-----VT~l~FSpdg~~LLsvsR-----------DRt~sl~~~~~~~~~e~~fa~~ 614 (764)
T KOG1063|consen 551 HAVIRLWNTANWLQVQELEGHSLT-----VTRLAFSPDGRYLLSVSR-----------DRTVSLYEVQEDIKDEFRFACL 614 (764)
T ss_pred ceEEEEEeccchhhhheecccceE-----EEEEEECCCCcEEEEeec-----------CceEEeeeeecccchhhhhccc
Confidence 68999996 6777889999988 999999999999999998 7999999875322 12224
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.|+ +-||+..|+||++.+||+|+|++|+||.
T Consensus 615 k~Ht--------------------------------------RIIWdcsW~pde~~FaTaSRDK~VkVW~ 646 (764)
T KOG1063|consen 615 KAHT--------------------------------------RIIWDCSWSPDEKYFATASRDKKVKVWE 646 (764)
T ss_pred cccc--------------------------------------eEEEEcccCcccceeEEecCCceEEEEe
Confidence 4454 4899999999999999999999999996
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.2e-22 Score=196.44 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=220.4
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
..+|.+|.|+ |+.+++.++|-+++|+|..+|+++++++- +.-.|..+-|-.....++.+|. +.|+ ++|.
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~s-kkyG~~~~~Fth~~~~~i~sSt-k~d~-------tIry 84 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINS-KKYGVDLACFTHHSNTVIHSST-KEDD-------TIRY 84 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeec-ccccccEEEEecCCceEEEccC-CCCC-------ceEE
Confidence 5678888898 99999999999999999999999999986 5556888888666666776664 3344 7777
Q ss_pred eEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEc
Q 011452 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss 252 (485)
-++.+.+. ...|. +|-.-+.+++-+| -+....|+|-|+|||+||++.-+|..-++-..-..+||.|.|.+++.+.
T Consensus 85 Lsl~dNky---lRYF~-GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 85 LSLHDNKY---LRYFP-GHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEeecCce---EEEcC-CCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEec
Confidence 77777776 34565 4667778899985 5578899999999999999988877666533334589999888887766
Q ss_pred CCCCeeEEEEecCC--CeEEEEeec---CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc---eE
Q 011452 253 ASGHVPLKILSIED--GTVLKSFNH---LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT---PS 324 (485)
Q Consensus 253 ~~~D~tIklWdi~t--G~~L~tl~~---~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~---v~ 324 (485)
.. ..|||.|+.. ..+-.+|.- -..+...+.|+ ++|..||.+...+.+.|.|.=+|..++++.+|... +-
T Consensus 160 ~~--~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 160 GS--ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-PDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred CC--CeEEEEEecccCCCCceeEccCCCCccceeeeEEc-CCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 54 4999999863 234455542 23456699997 78999999999999999999999999998877543 35
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
..+|+||++.+++++ ||+|-+|+++ |+.+..+.+ |... +..+.|.|---.+||+| ..+.
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~-----~~~~~fnP~~~mf~sa~-------------s~l~ 298 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGP-----VSCVRFNPRYAMFVSAS-------------SNLV 298 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCC-----ccccccCCceeeeeecC-------------ceEE
Confidence 678999999999999 9999999996 999999999 5555 67788999988888875 5788
Q ss_pred EEeC
Q 011452 402 ISNI 405 (485)
Q Consensus 402 lWdl 405 (485)
+|=.
T Consensus 299 fw~p 302 (311)
T KOG1446|consen 299 FWLP 302 (311)
T ss_pred EEec
Confidence 8843
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=219.73 Aligned_cols=230 Identities=16% Similarity=0.196 Sum_probs=174.7
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-E---EEE---cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-L---YSI---SDKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l---~tl---~~~~V~~VafSp-g~~ll~sss~~~D~tIklWd 263 (485)
.+-+.+++|+ |+|-.++|||-|.+||+||++.-.. + ..| ..|.|++++||| +.++|+.+.. -.+||+|
T Consensus 167 tk~Vsal~~D-p~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqakl~D 242 (641)
T KOG0772|consen 167 TKIVSALAVD-PSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAKLLD 242 (641)
T ss_pred ceEEEEeeec-CCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---cceeEEc
Confidence 3456678997 7999999999999999999975432 1 222 258999999997 6666655332 4899999
Q ss_pred cCCCeEEEEe-------------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecc-----cCCCceE
Q 011452 264 IEDGTVLKSF-------------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSR-----TEFMTPS 324 (485)
Q Consensus 264 i~tG~~L~tl-------------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~-----gh~~~v~ 324 (485)
- +|..+..| +||...+.+..|.|..-+.+|++++|+|+||||+.+.+ .++++. +--..|.
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 5 66665443 46777778889986666889999999999999998653 445542 3345788
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcEE----EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~ll----~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+.+|+|||++||++. ||.|.+|+..+.-+ ..=..|... ..|.+|.||+||++|+|-+. |++
T Consensus 322 sC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g---~~Itsi~FS~dg~~LlSRg~-----------D~t 387 (641)
T KOG0772|consen 322 SCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG---QDITSISFSYDGNYLLSRGF-----------DDT 387 (641)
T ss_pred eeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC---CceeEEEeccccchhhhccC-----------CCc
Confidence 899999999999999 99999999743322 223456542 23899999999999999876 799
Q ss_pred EEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 400 INISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 400 IklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
+|||||.. .|||.+..+-.+. -.-+.++||||.+.|+||..
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~------------------------------------~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTP------------------------------------FPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred eeeeeccccccchhhhcCCCcc------------------------------------CCCCccccCCCceEEEeccc
Confidence 99999965 5778777665420 14456899999999999974
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-22 Score=221.73 Aligned_cols=244 Identities=14% Similarity=0.113 Sum_probs=188.3
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-----------------------C--------C
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-----------------------G--------K 179 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-----------------------G--------~ 179 (485)
++..|++.||++-||+||++||+|+. | +.++||-|.. + +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGe----D------~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~ 331 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGE----D------GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEK 331 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCC----C------ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccc
Confidence 44469999999999999999999764 4 5999998855 0 0
Q ss_pred c------------------Ccccceeee-------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-C
Q 011452 180 P------------------DAGFALFES-------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D 233 (485)
Q Consensus 180 ~------------------~~~~~lf~~-------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~ 233 (485)
. ......|.. +|..-+..+++| ...+|.|+|.|+|||||++..-+||.+|. .
T Consensus 332 ~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hn 409 (712)
T KOG0283|consen 332 ISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFSHN 409 (712)
T ss_pred ccccccccccccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEecC
Confidence 0 000011111 244445567887 35688899999999999999999999995 5
Q ss_pred CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 011452 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL 312 (485)
Q Consensus 234 ~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~ 312 (485)
+.|.+|+|+| |..+.+++ +-|+.||||+|.+-++..-.. ...-|.+|.|. |+|+..++|+.+|.+++|+...-++
T Consensus 410 dfVTcVaFnPvDDryFiSG--SLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~-PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISG--SLDGKVRLWSISDKKVVDWND-LRDLITAVCYS-PDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred CeeEEEEecccCCCcEeec--ccccceEEeecCcCeeEeehh-hhhhheeEEec-cCCceEEEEEeccEEEEEEccCCeE
Confidence 7899999998 55555553 567999999998866654333 23678899997 7799999999999999999997766
Q ss_pred EEecc---------cCCCceEEEEEcCCCc--EEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 313 TEVSR---------TEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 313 ~~~l~---------gh~~~v~avaFspdg~--llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..... .|. .|+.+-|.|... +|+|..|..|+|+|.+ -+++..|.|+.... .=....|++||++|
T Consensus 486 ~~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~---SQ~~Asfs~Dgk~I 561 (712)
T KOG0283|consen 486 VSDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS---SQISASFSSDGKHI 561 (712)
T ss_pred EEeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC---cceeeeEccCCCEE
Confidence 44431 133 799999976544 7888779999999995 88999999987652 22578999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+|. |.-|.||+.
T Consensus 562 Vs~se-----------Ds~VYiW~~ 575 (712)
T KOG0283|consen 562 VSASE-----------DSWVYIWKN 575 (712)
T ss_pred EEeec-----------CceEEEEeC
Confidence 99996 799999997
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=201.30 Aligned_cols=298 Identities=13% Similarity=0.149 Sum_probs=212.1
Q ss_pred EEeeecccCcEE-----EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecc
Q 011452 117 CAAFCRETNQRI-----CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (485)
Q Consensus 117 iklW~~~tG~~l-----~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~ 191 (485)
.+-|+.++.+.. .+|.+ |...|.+++||.||+.|||++ +| |+|+||++++=...+-.-+-..-.
T Consensus 63 ~~~~k~~q~~f~Hpl~~~~LKg-H~~~vt~~~FsSdGK~lat~~----~D------r~Ir~w~~~DF~~~eHr~~R~nve 131 (420)
T KOG2096|consen 63 NDQWKAKQPTFVHPLNVSVLKG-HKKEVTDVAFSSDGKKLATIS----GD------RSIRLWDVRDFENKEHRCIRQNVE 131 (420)
T ss_pred hhhhcccCCCcccchhhhhhhc-cCCceeeeEEcCCCceeEEEe----CC------ceEEEEecchhhhhhhhHhhcccc
Confidence 445655544432 35666 888899999999999999988 45 799999985411100000111224
Q ss_pred ccCceEEEEeCCCCe-EEEEeeCCCcEEEeecC---CCeEEEE-Ec----------CCcEEEEEEcCCceEEEEEcCCCC
Q 011452 192 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLK---NYTMLYS-IS----------DKNVQEIKISPGIMLLIFTKASGH 256 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~---~g~~l~t-l~----------~~~V~~VafSpg~~ll~sss~~~D 256 (485)
..||..|.|. ||-+ ++++.....++.++-+. .|..-++ ++ .-.|..+-+-.++..+.+++ .|
T Consensus 132 ~dhpT~V~Fa-pDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas--~d 208 (420)
T KOG2096|consen 132 YDHPTRVVFA-PDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS--LD 208 (420)
T ss_pred CCCceEEEEC-CCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec--CC
Confidence 5688899998 5654 55666777888888764 2332211 11 12456666667777777655 45
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEE-----ecccCCCceEEEEE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTE-----VSRTEFMTPSAFIF 328 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~-----~l~gh~~~v~avaF 328 (485)
.+|-||++. |+.|.++...+..+...+.+ |+|..+++++.---|++|.+- .|+..+ .|.||+..|.+++|
T Consensus 209 t~i~lw~lk-Gq~L~~idtnq~~n~~aavS-P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aF 286 (420)
T KOG2096|consen 209 TKICLWDLK-GQLLQSIDTNQSSNYDAAVS-PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAF 286 (420)
T ss_pred CcEEEEecC-CceeeeeccccccccceeeC-CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeee
Confidence 899999997 99999998655555566654 788888888999999999853 344332 36899999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC-----Cc---EEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR-----GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~-----G~---ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
||+.+.++|.| ||++||||.+ |+ +++++. -|..- ..---++.||.|+.||-+..
T Consensus 287 sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag---~~p~RL~lsP~g~~lA~s~g------------ 351 (420)
T KOG2096|consen 287 SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAG---SEPVRLELSPSGDSLAVSFG------------ 351 (420)
T ss_pred CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcC---CCceEEEeCCCCcEEEeecC------------
Confidence 99999999999 9999999964 22 333331 11111 01126999999999998764
Q ss_pred CeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 398 GSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.+|+++.-++|+-+-+++. |. ..|.+++|+|||++|||.+
T Consensus 352 s~l~~~~se~g~~~~~~e~~h~--------------------------------------~~Is~is~~~~g~~~atcG- 392 (420)
T KOG2096|consen 352 SDLKVFASEDGKDYPELEDIHS--------------------------------------TTISSISYSSDGKYIATCG- 392 (420)
T ss_pred CceEEEEcccCccchhHHHhhc--------------------------------------CceeeEEecCCCcEEeeec-
Confidence 6899999999987777654 43 3899999999999999997
Q ss_pred CCcEEEcc
Q 011452 477 HGLVHVWS 484 (485)
Q Consensus 477 DgtVklWd 484 (485)
|..|+|-.
T Consensus 393 dr~vrv~~ 400 (420)
T KOG2096|consen 393 DRYVRVIR 400 (420)
T ss_pred ceeeeeec
Confidence 66677654
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-22 Score=224.06 Aligned_cols=281 Identities=12% Similarity=0.133 Sum_probs=219.7
Q ss_pred cccccc-eEEEEEe--cCEEEEEe--CCCeEEeeeccc------------CcEEEEeecCCcccEEEEEEeeCCCEEEEE
Q 011452 92 LRKRSK-IIEIVAA--RDIVFALA--QSGVCAAFCRET------------NQRICFLNVTADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 92 ~~~~s~-V~~i~~s--~~~ias~s--~dgtiklW~~~t------------G~~l~tl~g~~~~~i~sv~~spdg~~Las~ 154 (485)
+.|... |.+|... +..+|+++ .|+.+++|+.+. -+.||++.. |...|.+|.|+|||++||++
T Consensus 9 v~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~-h~~sv~CVR~S~dG~~lAsG 87 (942)
T KOG0973|consen 9 VNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDD-HDGSVNCVRFSPDGSYLASG 87 (942)
T ss_pred cccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeecc-ccCceeEEEECCCCCeEeec
Confidence 334333 4555555 89999999 999999998662 346788876 99999999999999999985
Q ss_pred EeecCCCCcccceeEEEEeEeccCCcCcccceeee-----------------ccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 155 SVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-----------------ESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 155 S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----------------~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
| || +.+-||.... . .....|.. +|-.-+-.|+++ ||+.+|||+|-|++|
T Consensus 88 S----DD------~~v~iW~~~~-~--~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Ws-p~~~~lvS~s~DnsV 153 (942)
T KOG0973|consen 88 S----DD------RLVMIWERAE-I--GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWS-PDDSLLVSVSLDNSV 153 (942)
T ss_pred c----Cc------ceEEEeeecc-c--CCcccccccccccccceeeEEEEEecCCCccceeccC-CCccEEEEecccceE
Confidence 5 78 8999999542 1 11122321 133334468998 799999999999999
Q ss_pred EEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc------ceeEEEEEecC
Q 011452 218 KVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH------RNKKVDFIEQF 289 (485)
Q Consensus 218 KlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~------~~~~V~f~~~~ 289 (485)
-|||..+.+++.++.+| .|-.|.|-|=|+++++.+ +|+|||+|.+.+-.+.++++++-. +...+.|+ ||
T Consensus 154 iiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWS-PD 230 (942)
T KOG0973|consen 154 IIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWS-PD 230 (942)
T ss_pred EEEccccceeeeeeecccccccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccC-CC
Confidence 99999999988888654 799999999666666655 459999999888778888875543 23478886 88
Q ss_pred CCEEEEE----eCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-----CCc------------EEEEEe-CCcEEEEe
Q 011452 290 NEKLLVK----QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-----ENQ------------LFLTFR-NRTVAVWN 347 (485)
Q Consensus 290 ~~~lls~----s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-----dg~------------llaS~s-D~TIklWd 347 (485)
|++|++. +.-.++.|.+-.+-+.-..|.||...+..++|+| ..+ .+|+|+ |++|-||+
T Consensus 231 G~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~ 310 (942)
T KOG0973|consen 231 GHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWN 310 (942)
T ss_pred cCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEe
Confidence 9999885 3557999999999999999999999999999987 111 678889 99999999
Q ss_pred CC-CcEE---EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 348 FR-GELV---TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 348 ~~-G~ll---~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.- -+.+ +.|-++. |.++.+||||-.|.-+|. ||+|.+..++..
T Consensus 311 T~~~RPl~vi~~lf~~S-------I~DmsWspdG~~LfacS~-----------DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 311 TALPRPLFVIHNLFNKS-------IVDMSWSPDGFSLFACSL-----------DGTVALIHFEEK 357 (942)
T ss_pred cCCCCchhhhhhhhcCc-------eeeeeEcCCCCeEEEEec-----------CCeEEEEEcchH
Confidence 83 4432 2333443 999999999999999987 799999988753
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.2e-22 Score=204.62 Aligned_cols=264 Identities=14% Similarity=0.137 Sum_probs=218.8
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
...+++|+.|.++-++|..+++.|.++.| |.-.|.+|-|+|+.+.++++|++ ..++||.+..-..-
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad----------~~i~vws~~~~s~~--- 296 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASAD----------EIIRVWSVPLSSEP--- 296 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCc----------ceEEeeccccccCc---
Confidence 47899999999999999999999999988 88899999999999999998853 48999997544431
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
.+.. -+-..+.++.-. |+|.||.++|.|+++-+-|+.+|.++....+ -.+.+.+|+|||.++.++. .|+.||
T Consensus 297 ~~~~-~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~vk 372 (506)
T KOG0289|consen 297 TSSR-PHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGVVK 372 (506)
T ss_pred cccc-cccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCceEE
Confidence 1111 122334567775 8999999999999999999999998766654 2589999999999887754 558999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~llaS~ 338 (485)
|||+..+..+..|.+|.+.|.+|+|++ |++.++ +.+|+.|+|||++.-+..+++. .....|.++.|-+-|++|+.+
T Consensus 373 iwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 373 IWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 999999999999999999999999985 666555 5799999999999887766653 334479999999999999999
Q ss_pred e-CCcEEEEeC---CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 339 R-NRTVAVWNF---RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 339 s-D~TIklWd~---~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+ |=+|-+.+- +..++..+..|... .+.|.|..+-++|+++|+ |...||.-
T Consensus 451 g~~l~Vy~~~k~~k~W~~~~~~~~~sg~-----st~v~Fg~~aq~l~s~sm-----------d~~l~~~a 504 (506)
T KOG0289|consen 451 GSDLQVYICKKKTKSWTEIKELADHSGL-----STGVRFGEHAQYLASTSM-----------DAILRLYA 504 (506)
T ss_pred cceeEEEEEecccccceeeehhhhcccc-----cceeeecccceEEeeccc-----------hhheEEee
Confidence 7 777777774 36788899999866 789999999999999998 67777764
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-23 Score=208.70 Aligned_cols=299 Identities=15% Similarity=0.190 Sum_probs=220.9
Q ss_pred cccccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEec-CEEEEEeCCCeEEeeecccCcEEEEeecC
Q 011452 56 RAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVT 134 (485)
Q Consensus 56 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~-~~ias~s~dgtiklW~~~tG~~l~tl~g~ 134 (485)
||..++---++|-.==+ ...+.|..-++|.+-.|. . ..+||||.||.|+|||+.+-+|+.++..
T Consensus 43 RALNAtKleR~fakPFv-~~L~gHrdGV~~lakhp~-------------~ls~~aSGs~DG~VkiWnlsqR~~~~~f~A- 107 (433)
T KOG0268|consen 43 RALNATKLERVFAKPFV-GSLDGHRDGVSCLAKHPN-------------KLSTVASGSCDGEVKIWNLSQRECIRTFKA- 107 (433)
T ss_pred HHhhhHHHHHHhhccch-hhccccccccchhhcCcc-------------hhhhhhccccCceEEEEehhhhhhhheeec-
Confidence 45566666666665322 445899998888888777 3 4799999999999999999999999876
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
|++.|+.|.+.. ...++++ +| +|++.|-+ .|.+.. .+-.. .+--+....+ +.+.|+|++
T Consensus 108 H~G~V~Gi~v~~--~~~~tvg----dD------KtvK~wk~-~~~p~~---tilg~s~~~gIdh~~~----~~~FaTcGe 167 (433)
T KOG0268|consen 108 HEGLVRGICVTQ--TSFFTVG----DD------KTVKQWKI-DGPPLH---TILGKSVYLGIDHHRK----NSVFATCGE 167 (433)
T ss_pred ccCceeeEEecc--cceEEec----CC------cceeeeec-cCCcce---eeeccccccccccccc----cccccccCc
Confidence 999999999988 4556765 56 79999996 554311 11111 1111112222 346677774
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
.|-|||..--..+.++. .+.|.+|+|+|.-.-+.++ ..+|+.|-|+|+.++++|+...- .-+...|.|+| ..-
T Consensus 168 --~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas-~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnP-eaf 242 (433)
T KOG0268|consen 168 --QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS-CASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNP-EAF 242 (433)
T ss_pred --eeeecccccCCccceeecCCCceeEEecCCCcchheee-eccCCceEEEecccCCccceeee-eccccceecCc-ccc
Confidence 58899987666666665 5789999999933322221 23568999999999999987652 24567899985 566
Q ss_pred EEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCe
Q 011452 292 KLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v 368 (485)
.+.++++|.++-.+|++. .+.+.+..+|...|..|.|||-|+-|+||| |+||+|+.++ |.---.. |+-- ...|
T Consensus 243 nF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY--htkR--Mq~V 318 (433)
T KOG0268|consen 243 NFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY--HTKR--MQHV 318 (433)
T ss_pred ceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh--hHhh--hhee
Confidence 777789999999999997 457888899999999999999999999999 9999999996 5432221 1110 1128
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
..|.+|-|.++|+|||+ |+.||||-..--+
T Consensus 319 ~~Vk~S~Dskyi~SGSd-----------d~nvRlWka~Ase 348 (433)
T KOG0268|consen 319 FCVKYSMDSKYIISGSD-----------DGNVRLWKAKASE 348 (433)
T ss_pred eEEEEeccccEEEecCC-----------Ccceeeeecchhh
Confidence 99999999999999996 7999999754333
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=196.57 Aligned_cols=229 Identities=14% Similarity=0.182 Sum_probs=178.7
Q ss_pred CCCeEEEEeeCCCcEEEeecCC-C--eEEEEEcC--CcEEEEEEc-C-CceEEEEEcCCCCeeEEEEecCCCeEE--EEe
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKN-Y--TMLYSISD--KNVQEIKIS-P-GIMLLIFTKASGHVPLKILSIEDGTVL--KSF 273 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~-g--~~l~tl~~--~~V~~VafS-p-g~~ll~sss~~~D~tIklWdi~tG~~L--~tl 273 (485)
--|+.||+++.|++|||+.+.+ + +++.+|.+ .+|+.|+|- | -|.+|+++ +.|+.|-||.-++|+-- ..+
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc--sYDgkVIiWke~~g~w~k~~e~ 98 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC--SYDGKVIIWKEENGRWTKAYEH 98 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe--ecCceEEEEecCCCchhhhhhh
Confidence 3599999999999999999974 3 46777765 589999999 7 44455554 46799999998888543 455
Q ss_pred ecCCcceeEEEEEecCCCE-EEEEeCCCcEEEEECCCC-e--eEEecccCCCceEEEEEcCC---C-----------cEE
Q 011452 274 NHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNF-E--LTEVSRTEFMTPSAFIFLYE---N-----------QLF 335 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~-lls~s~D~tIkIWDv~tg-~--~~~~l~gh~~~v~avaFspd---g-----------~ll 335 (485)
..|...+.+|+|.|-.-+. |+.++.||+|.|.+.++. . ..+....|...|++|.+.|- | +.|
T Consensus 99 ~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krl 178 (299)
T KOG1332|consen 99 AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRL 178 (299)
T ss_pred hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCccccccee
Confidence 6788889999997543344 445689999999998865 2 23445679999999999886 6 679
Q ss_pred EEEe-CCcEEEEeCC-C--cEEEEeecCCCCCCCCCeeEEEECCCC----CEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 336 LTFR-NRTVAVWNFR-G--ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G--~ll~tl~gH~~~~~~~~v~svafSpDG----~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
+|++ |.+||||+++ + ++-.+|++|.+| |+.||+.|.- .+|||+|. ||++-||-..
T Consensus 179 vSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw-----VRDVAwaP~~gl~~s~iAS~Sq-----------Dg~viIwt~~- 241 (299)
T KOG1332|consen 179 VSGGCDNLVKIWKFDSDSWKLERTLEGHKDW-----VRDVAWAPSVGLPKSTIASCSQ-----------DGTVIIWTKD- 241 (299)
T ss_pred eccCCccceeeeecCCcchhhhhhhhhcchh-----hhhhhhccccCCCceeeEEecC-----------CCcEEEEEec-
Confidence 9999 9999999996 4 466789999999 9999999964 78999987 7999999753
Q ss_pred CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.....+. ..+++|-..|+.+.||+.|+.|+-++.|+.|.||.
T Consensus 242 -~e~e~wk~---------------------------------tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 242 -EEYEPWKK---------------------------------TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred -CccCcccc---------------------------------cccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 11111110 11222334899999999999999999999999994
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-22 Score=203.30 Aligned_cols=232 Identities=14% Similarity=0.189 Sum_probs=198.3
Q ss_pred ceEEEEeCCCC--eEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 195 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 195 ~~~V~Fs~pnG--~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++..+|+ +.. ..+.+|+.|.++-++|-...+.+.++.|+ .|.+|.|+|+...+++++. |..|+||+..+..+-
T Consensus 220 pgi~ald-~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSa--d~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 220 PGITALD-IIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASA--DEIIRVWSVPLSSEP 296 (506)
T ss_pred CCeeEEe-ecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCC--cceEEeeccccccCc
Confidence 4456665 344 57788999999999999999999888875 6999999998888887654 489999999888888
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
....-|...|..+... |.|++|++++.|++.-.-|+++|.++..-.. -...+.+.+|.|||-+|+++. |+.|||||
T Consensus 297 ~~~~~h~~~V~~ls~h-~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwd 375 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLH-PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWD 375 (506)
T ss_pred cccccccccceeeeec-cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEE
Confidence 8888888888888875 7899999999999999999999998776543 234689999999999999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
+. +.-+..|.||... |.+|+|+-+|-+||+++. |+.|+|||+.--+..++|.-.+.
T Consensus 376 lks~~~~a~Fpght~~-----vk~i~FsENGY~Lat~ad-----------d~~V~lwDLRKl~n~kt~~l~~~------- 432 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP-----VKAISFSENGYWLATAAD-----------DGSVKLWDLRKLKNFKTIQLDEK------- 432 (506)
T ss_pred cCCccccccCCCCCCc-----eeEEEeccCceEEEEEec-----------CCeEEEEEehhhcccceeecccc-------
Confidence 95 8899999999988 999999999999999996 78899999986666677754331
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..|.+|.|++-|+.|+.++.|=+|++.
T Consensus 433 ------------------------------~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 433 ------------------------------KEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred ------------------------------ccceeEEEcCCCCeEEeecceeEEEEE
Confidence 168899999999999999988887764
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=206.42 Aligned_cols=304 Identities=14% Similarity=0.163 Sum_probs=239.8
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
|+.|++.|-++|||+.+|+.++++++ +...|.++-=+|==+-+|.+- .+ ++|-|.+++.++.. .-|
T Consensus 175 IvvGs~~G~lql~Nvrt~K~v~~f~~-~~s~IT~ieqsPaLDVVaiG~----~~------G~ViifNlK~dkil---~sF 240 (910)
T KOG1539|consen 175 IVVGSSQGRLQLWNVRTGKVVYTFQE-FFSRITAIEQSPALDVVAIGL----EN------GTVIIFNLKFDKIL---MSF 240 (910)
T ss_pred EEEeecCCcEEEEEeccCcEEEEecc-cccceeEeccCCcceEEEEec----cC------ceEEEEEcccCcEE---EEE
Confidence 67799999999999999999999998 557899999999877666643 45 69999999998872 245
Q ss_pred eeccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEE-
Q 011452 188 ESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKIL- 262 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklW- 262 (485)
++. .+.+..++|. .||. +||+|..-|.+-+|||+.-+++..+. ...|....|-|+.-++.+++.| +.+|+|
T Consensus 241 k~d-~g~VtslSFr-tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D--nSlk~~v 316 (910)
T KOG1539|consen 241 KQD-WGRVTSLSFR-TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD--NSLKVWV 316 (910)
T ss_pred Ecc-ccceeEEEec-cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC--CceeEEE
Confidence 442 4567789997 5775 56777777999999999887765553 4578889999999888886654 788888
Q ss_pred -ecCCC--eEEEEeecCCcceeEEEEEe----------------------------------------------------
Q 011452 263 -SIEDG--TVLKSFNHLLHRNKKVDFIE---------------------------------------------------- 287 (485)
Q Consensus 263 -di~tG--~~L~tl~~~~~~~~~V~f~~---------------------------------------------------- 287 (485)
|..+| ..|+.=.||..+-..|.|..
T Consensus 317 fD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p 396 (910)
T KOG1539|consen 317 FDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLP 396 (910)
T ss_pred eeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCC
Confidence 54444 23443334433322222210
Q ss_pred -------------------------------------------------------------cCCCEEEEEeCCCcEEEEE
Q 011452 288 -------------------------------------------------------------QFNEKLLVKQENENLQILD 306 (485)
Q Consensus 288 -------------------------------------------------------------~~~~~lls~s~D~tIkIWD 306 (485)
+.|..-++|...|+|-++|
T Consensus 397 ~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN 476 (910)
T KOG1539|consen 397 PIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN 476 (910)
T ss_pred cceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEE
Confidence 1111244556789999999
Q ss_pred CCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCCEE
Q 011452 307 VRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 307 v~tg~~~~~l---~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~~L 380 (485)
+++|.....+ ..|.+.|..++.---+++++|++ ||-+|.||+. ..++.++. +|. +..+..+....++
T Consensus 477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~-------~~~iv~hr~s~l~ 549 (910)
T KOG1539|consen 477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSS-------ITGIVYHRVSDLL 549 (910)
T ss_pred cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCC-------cceeeeeehhhhh
Confidence 9999988888 47999999999999999999999 9999999996 77777775 332 5677778888899
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
|.++. |=.|++.|+.|-+.++.|.||++ .|+
T Consensus 550 a~~~d-----------df~I~vvD~~t~kvvR~f~gh~n--------------------------------------rit 580 (910)
T KOG1539|consen 550 AIALD-----------DFSIRVVDVVTRKVVREFWGHGN--------------------------------------RIT 580 (910)
T ss_pred hhhcC-----------ceeEEEEEchhhhhhHHhhcccc--------------------------------------cee
Confidence 99886 78999999999999999999985 899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEccC
Q 011452 461 ALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 461 sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++|||||+.|+|++.|++||+||+
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEec
Confidence 9999999999999999999999995
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-23 Score=223.05 Aligned_cols=218 Identities=12% Similarity=0.234 Sum_probs=181.1
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~ 286 (485)
.++....+-..|+||.+. ++.|...|...++-..+..++.+ ..|..+-||.+..-.++..|.+|...+.+|.|.
T Consensus 6 ~~m~~~~~t~Lr~~~~~~----~~~hsaav~~lk~~~s~r~~~~G--g~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~ 79 (825)
T KOG0267|consen 6 FLMKTKRATKLRVWDTRE----FVAHSAAVGCLKIRKSSRSLVTG--GEDEKVNLWAIGKPNAITSLTGHESPIESLTFD 79 (825)
T ss_pred ccceeeeeeccccccchh----hhhhhhhhceeeeeccceeeccC--CCceeeccccccCCchhheeeccCCcceeeecC
Confidence 344444556678888543 22244456666654444444443 244677799987767788899999999999997
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHP 364 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~ 364 (485)
. +...|++|+.|+|||+||+..++.+++|.||...+.+|.|+|-+.++|+++ |.-+++||.+ -.|.+++.+|..-
T Consensus 80 ~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v-- 156 (825)
T KOG0267|consen 80 T-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRV-- 156 (825)
T ss_pred c-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcce--
Confidence 3 344555567999999999999999999999999999999999999999999 9999999997 7799999998755
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
|+.+.|+|||.+++++.. |++|||||+..|+.+.+|++|+.
T Consensus 157 ---v~~l~lsP~Gr~v~~g~e-----------d~tvki~d~~agk~~~ef~~~e~------------------------- 197 (825)
T KOG0267|consen 157 ---VDVLRLSPDGRWVASGGE-----------DNTVKIWDLTAGKLSKEFKSHEG------------------------- 197 (825)
T ss_pred ---eEEEeecCCCceeeccCC-----------cceeeeecccccccccccccccc-------------------------
Confidence 899999999999999875 79999999999999999999983
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|.|+|---.|++||.|+||++||+
T Consensus 198 -------------~v~sle~hp~e~Lla~Gs~d~tv~f~dl 225 (825)
T KOG0267|consen 198 -------------KVQSLEFHPLEVLLAPGSSDRTVRFWDL 225 (825)
T ss_pred -------------cccccccCchhhhhccCCCCceeeeecc
Confidence 7888999999999999999999999985
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.8e-22 Score=205.27 Aligned_cols=282 Identities=13% Similarity=0.098 Sum_probs=225.3
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCC
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVN 204 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pn 204 (485)
+.+|+ |.++|-.+.+|-..+.+-|++ . +.|+|||| .+.-+. .++-+. ..-.++.++... ||
T Consensus 413 ~~tL~--HGEvVcAvtIS~~trhVyTgG-----k------gcVKVWdi-s~pg~k-~PvsqLdcl~rdnyiRSckL~-pd 476 (705)
T KOG0639|consen 413 INTLA--HGEVVCAVTISNPTRHVYTGG-----K------GCVKVWDI-SQPGNK-SPVSQLDCLNRDNYIRSCKLL-PD 476 (705)
T ss_pred hhhhc--cCcEEEEEEecCCcceeEecC-----C------CeEEEeec-cCCCCC-CccccccccCcccceeeeEec-CC
Confidence 45554 789999999999999988855 2 69999998 222211 121111 123566788886 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEE--EEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTML--YSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l--~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|+.|..|+.-.|+-||||..-+.. ..+. +-..+++++|||.+++.++- .|+.|.|||+++..+++.|+||++..
T Consensus 477 grtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 477 GRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeec--cCCcEEEEEcccceeeecccCCCCCc
Confidence 999999999999999999876642 2222 34688999999999887654 45899999999999999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecC
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDH 359 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH 359 (485)
.+|+.+ .+|.+|-+|+-|+|||.||++++..++.- .-...|.++-..|.+..||.|- ++.|.|-..+|...+-|.-|
T Consensus 555 scIdis-~dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlh 632 (705)
T KOG0639|consen 555 SCIDIS-KDGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLH 632 (705)
T ss_pred eeEEec-CCCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccc
Confidence 999976 78999999999999999999988755421 1134788888899999999999 99998888888877777666
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
.. | |.++-|.+-|++.+|.++ |+-++.|..--|..+...+..+
T Consensus 633 eS----c-VLSlKFa~cGkwfvStGk-----------DnlLnawrtPyGasiFqskE~S--------------------- 675 (705)
T KOG0639|consen 633 ES----C-VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSKESS--------------------- 675 (705)
T ss_pred cc----E-EEEEEecccCceeeecCc-----------hhhhhhccCccccceeeccccC---------------------
Confidence 54 4 899999999999999988 7999999877777766555432
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+...|-|.++|||||-|+...|+.
T Consensus 676 ------------------sVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 676 ------------------SVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred ------------------cceeeeeccCceEEEecCCCcceEEEE
Confidence 789999999999999999998777664
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-21 Score=192.31 Aligned_cols=278 Identities=11% Similarity=0.122 Sum_probs=221.1
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecc---------------c--C-cEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRE---------------T--N-QRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~---------------t--G-~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
|.++++.-+|+ |..+|+||-|-.||+.|.+ + + -.|+||-- |.+.|..|.|.|-...||+
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYD-H~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYD-HVDEVNDLDFHPRETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhh-ccCcccceeecchhheEEe
Confidence 78889999999 9999999999999999987 1 1 35888887 7778999999999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~ 232 (485)
+|. | .+++|.|+..-....+++.|+. ...+.+++|. |.|.+|+-|.+-.++||+|++|++|..+- +
T Consensus 190 ~sr----D------~tvKlFDfsK~saKrA~K~~qd--~~~vrsiSfH-PsGefllvgTdHp~~rlYdv~T~QcfvsanP 256 (430)
T KOG0640|consen 190 GSR----D------NTVKLFDFSKTSAKRAFKVFQD--TEPVRSISFH-PSGEFLLVGTDHPTLRLYDVNTYQCFVSANP 256 (430)
T ss_pred ccC----C------CeEEEEecccHHHHHHHHHhhc--cceeeeEeec-CCCceEEEecCCCceeEEeccceeEeeecCc
Confidence 774 3 5999999844333445667775 2345699997 89999999999999999999999987654 2
Q ss_pred ----CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCC-cceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 233 ----DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLL-HRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 233 ----~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
...|.+|.+|+.+.+.+++| .|+-|||||--.++|+.+|. .|. ..+-+..|. -++.++|+++.|.++|||.
T Consensus 257 d~qht~ai~~V~Ys~t~~lYvTaS--kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ft-kn~kyiLsSG~DS~vkLWE 333 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTGSLYVTAS--KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFT-KNGKYILSSGKDSTVKLWE 333 (430)
T ss_pred ccccccceeEEEecCCccEEEEec--cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEc-cCCeEEeecCCcceeeeee
Confidence 35799999998666666655 45899999999999999996 332 346678885 5678899999999999999
Q ss_pred CCCCeeEEecccC-----CCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEe-ecCCCCCCCCCeeEEEECCCC
Q 011452 307 VRNFELTEVSRTE-----FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 307 v~tg~~~~~l~gh-----~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl-~gH~~~~~~~~v~svafSpDG 377 (485)
+.+|+++++..|- +..-...+|.....+++.-. -+.+--||.+ +..+..+ -||... ++-|.-||.+
T Consensus 334 i~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a-----~R~i~HSP~~ 408 (430)
T KOG0640|consen 334 ISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGA-----VRWIVHSPVE 408 (430)
T ss_pred ecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCC-----ceEEEeCCCC
Confidence 9999999987553 22233345777777666554 5567789996 6554443 378877 8999999999
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
--.+++|. |-.+|.|-
T Consensus 409 p~FmTcsd-----------D~raRFWy 424 (430)
T KOG0640|consen 409 PAFMTCSD-----------DFRARFWY 424 (430)
T ss_pred Cceeeecc-----------cceeeeee
Confidence 99999986 79999995
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-21 Score=189.36 Aligned_cols=234 Identities=12% Similarity=0.169 Sum_probs=181.2
Q ss_pred eeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc---eEEEEEcCCCCeeE
Q 011452 186 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI---MLLIFTKASGHVPL 259 (485)
Q Consensus 186 lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~---~ll~sss~~~D~tI 259 (485)
+|.. .|...+.+||- +|.++||||.|-||+|+|+..-..+.++. ...|.++.|.|.- .|+++ +.|+.|
T Consensus 36 lF~~~aH~~sitavAV---s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~---sdDG~i 109 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAV---SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSG---SDDGHI 109 (362)
T ss_pred cccccccccceeEEEe---cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeee---cCCCcE
Confidence 4543 24455556775 58999999999999999999888777774 5689999999644 55543 345899
Q ss_pred EEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~llaS 337 (485)
-+|+....+++++|+.|.+.|..|+.. | .++|+.+ +.|+.+|+||+-+|+--.+++ .|. ...|.|+|.|..|+-
T Consensus 110 ~iw~~~~W~~~~slK~H~~~Vt~lsiH-P-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~--at~v~w~~~Gd~F~v 185 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKAHKGQVTDLSIH-P-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK--ATLVSWSPQGDHFVV 185 (362)
T ss_pred EEEEcCCeEEeeeecccccccceeEec-C-CCceEEEEcCCceeeeehhhcCccceeeccCCc--ceeeEEcCCCCEEEE
Confidence 999999999999999999999999987 4 4566665 999999999999887533332 233 344889999999998
Q ss_pred EeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 338 FRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 338 ~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
..-+.|-||.++ ..+...++... . +..+-|- ++.+|+.|.. |+.|++||-.++.++..+.+
T Consensus 186 ~~~~~i~i~q~d~A~v~~~i~~~~-r-----~l~~~~l-~~~~L~vG~d-----------~~~i~~~D~ds~~~~~~~~A 247 (362)
T KOG0294|consen 186 SGRNKIDIYQLDNASVFREIENPK-R-----ILCATFL-DGSELLVGGD-----------NEWISLKDTDSDTPLTEFLA 247 (362)
T ss_pred EeccEEEEEecccHhHhhhhhccc-c-----ceeeeec-CCceEEEecC-----------CceEEEeccCCCccceeeec
Confidence 886679999996 66655554331 1 2333332 5667777764 79999999999999999999
Q ss_pred CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE--EcCCCCEEEEecCCCcEEEccC
Q 011452 417 SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF--YDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 417 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~--fspDg~~LaSgs~DgtVklWd~ 485 (485)
|.+ .|-+++ -.|++.+|+|+|.||.|+|||+
T Consensus 248 H~~--------------------------------------RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~ 280 (362)
T KOG0294|consen 248 HEN--------------------------------------RVKDIASYTNPEHEYLVTASSDGFIKVWDI 280 (362)
T ss_pred chh--------------------------------------heeeeEEEecCCceEEEEeccCceEEEEEc
Confidence 984 455554 4789999999999999999984
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-20 Score=177.12 Aligned_cols=240 Identities=13% Similarity=0.169 Sum_probs=191.7
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CCeE--------E--EEEc-CCcEEEEEEcCCceEEEEEcCCC
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTM--------L--YSIS-DKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g~~--------l--~tl~-~~~V~~VafSpg~~ll~sss~~~ 255 (485)
..+.+|+|. |+|.+-|-||..+|.||-... .+.. + .+-| ...|.++++||.+.|++++ ++
T Consensus 33 qairav~fh-p~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatg--sn 109 (350)
T KOG0641|consen 33 QAIRAVAFH-PAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATG--SN 109 (350)
T ss_pred hheeeEEec-CCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEec--CC
Confidence 456799997 899999999999999987532 1111 1 1111 2479999999988887775 46
Q ss_pred CeeEEEEecCCCeEE-----EEeecCCcceeEEEEEec--CCCEEEEE-e-CCCcEEEEECCCCeeEEecccCCCceEEE
Q 011452 256 HVPLKILSIEDGTVL-----KSFNHLLHRNKKVDFIEQ--FNEKLLVK-Q-ENENLQILDVRNFELTEVSRTEFMTPSAF 326 (485)
Q Consensus 256 D~tIklWdi~tG~~L-----~tl~~~~~~~~~V~f~~~--~~~~lls~-s-~D~tIkIWDv~tg~~~~~l~gh~~~v~av 326 (485)
|++||+.-...-+|- ..|+-|.+.+..++|.+. .++.||++ + .|..|-|=|..+|+..+.+.||++.|-++
T Consensus 110 dk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilal 189 (350)
T KOG0641|consen 110 DKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILAL 189 (350)
T ss_pred CceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEE
Confidence 699999865544443 357778899999999632 24556654 3 88999999999999999999999999887
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
++-+|-+|+|++ |.||+.||++ ..|+.++...- .--....|.+|+..|.|++|+||-. |.+--|
T Consensus 190 -yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~-----------dssc~l 257 (350)
T KOG0641|consen 190 -YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA-----------DSSCML 257 (350)
T ss_pred -EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC-----------CCceEE
Confidence 889999999999 9999999998 88999875321 1101123899999999999999876 688899
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+||.-|+.++.+..|+. .|++|-|||--.+|.|+|.|..|||
T Consensus 258 ydirg~r~iq~f~phsa--------------------------------------dir~vrfsp~a~yllt~syd~~ikl 299 (350)
T KOG0641|consen 258 YDIRGGRMIQRFHPHSA--------------------------------------DIRCVRFSPGAHYLLTCSYDMKIKL 299 (350)
T ss_pred EEeeCCceeeeeCCCcc--------------------------------------ceeEEEeCCCceEEEEecccceEEE
Confidence 99999999999999972 8999999999999999999999998
Q ss_pred ccC
Q 011452 483 WSN 485 (485)
Q Consensus 483 Wd~ 485 (485)
=|+
T Consensus 300 tdl 302 (350)
T KOG0641|consen 300 TDL 302 (350)
T ss_pred eec
Confidence 653
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-20 Score=184.45 Aligned_cols=291 Identities=16% Similarity=0.275 Sum_probs=206.2
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
|+.+|.++.+. |++++||+-||.+.+||++.- ..+.++ .|+. ++.
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~------t~~e~s------------~li~--------------k~~ 89 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNA------TDYEAS------------GLIA--------------KHK 89 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccc------cchhhc------------ccee--------------hee
Confidence 78889888888 999999999999999997721 111111 1111 121
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC---Cce
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP---GIM 246 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp---g~~ 246 (485)
-+ +..... ..|.-.+..+-+=|-|.-.++|+|.|.|+||||..|-+....+. ...|.+-+.|| ...
T Consensus 90 c~--v~~~h~--------~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHc 159 (397)
T KOG4283|consen 90 CI--VAKQHE--------NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHC 159 (397)
T ss_pred ee--ccccCC--------ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcce
Confidence 11 111110 11111122222224455578999999999999999988888887 56899999998 234
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-eeEEec--------
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNF-ELTEVS-------- 316 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg-~~~~~l-------- 316 (485)
|++.+- .|..|+|-|+..|.+-++|.||.+.|.+|.|+ |..+.+|+ ++.|++||+||++.- -|..++
T Consensus 160 LiA~gt--r~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws-p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~ 236 (397)
T KOG4283|consen 160 LIAAGT--RDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS-PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRP 236 (397)
T ss_pred EEEEec--CCCcEEEEeccCCcceeeeccccCceEEEEec-cCceeEEEecCCCceEEEEEeecccceeEEeecccCccC
Confidence 544433 34899999999999999999999999999998 55666666 589999999999864 344443
Q ss_pred ------ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcE-EEEee--cCCCCCCCCCeeEEEEC---CCCCEEEE
Q 011452 317 ------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL-VTSFE--DHLLWHPDCNTNNIYIT---SDQDLIIS 382 (485)
Q Consensus 317 ------~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~l-l~tl~--gH~~~~~~~~v~svafS---pDG~~LaS 382 (485)
..|...|+.++|+.||..+++.. |..+++|+.. |+- +..+- -|.. ..+.+|. -+....+-
T Consensus 237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~------~~~~~~~~~~~~s~vfv~ 310 (397)
T KOG4283|consen 237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQ------TTSFAVHIQSMDSDVFVL 310 (397)
T ss_pred ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccc------cccceEEEeecccceEEE
Confidence 45778899999999999999999 9999999985 652 11110 0110 1122221 11111111
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
- .+|+++-|.++..|..+.-+.+|- ..|.+.
T Consensus 311 ~-----------p~~~~lall~~~sgs~ir~l~~h~--------------------------------------k~i~c~ 341 (397)
T KOG4283|consen 311 F-----------PNDGSLALLNLLEGSFVRRLSTHL--------------------------------------KRINCA 341 (397)
T ss_pred E-----------ecCCeEEEEEccCceEEEeeeccc--------------------------------------ceeeEE
Confidence 1 136899999999999999999994 378899
Q ss_pred EEcCCCCEEEEecCCCcEEEcc
Q 011452 463 FYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVklWd 484 (485)
+|-||=+++++|+.|+.|..|.
T Consensus 342 ~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 342 AYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred eecCchhhhhccccCCcccccc
Confidence 9999999999999999998884
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-20 Score=200.55 Aligned_cols=316 Identities=16% Similarity=0.179 Sum_probs=228.1
Q ss_pred EEEEEeCCCeEEeeecccC--cEEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCc-C-
Q 011452 107 IVFALAQSGVCAAFCRETN--QRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKP-D- 181 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG--~~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~- 181 (485)
.+|.++.+..+.++.-.++ ++++.|.| |.++|++|+|+..+. .+..+| ++.| +.||||.|.-+.. +
T Consensus 161 lla~Ggs~~~v~~~s~~~d~f~~v~el~G-H~DWIrsl~f~~~~~~~~~laS--~SQD------~yIRiW~i~~~~~~~~ 231 (764)
T KOG1063|consen 161 LLACGGSKFVVDLYSSSADSFARVAELEG-HTDWIRSLAFARLGGDDLLLAS--SSQD------RYIRIWRIVLGDDEDS 231 (764)
T ss_pred EEEecCcceEEEEeccCCcceeEEEEeec-cchhhhhhhhhccCCCcEEEEe--cCCc------eEEEEEEEEecCCccc
Confidence 4566777777777764433 46788888 899999999998876 333333 4567 8999998854441 0
Q ss_pred ----------cccceee------------e---ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC--eEEEEE---
Q 011452 182 ----------AGFALFE------------S---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSI--- 231 (485)
Q Consensus 182 ----------~~~~lf~------------~---~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g--~~l~tl--- 231 (485)
.-.+.|. . +|-.|+.+|.+. |.|..|.|+|.|+++-+|...+- -=+-++
T Consensus 232 ~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~-p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlG 310 (764)
T KOG1063|consen 232 NEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWH-PEGLDLLSASADKSMIIWKPDENTGIWVDVVRLG 310 (764)
T ss_pred cccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEc-cchhhheecccCcceEEEecCCccceEEEEEEee
Confidence 0011111 1 466789999997 78988899999999999986543 222222
Q ss_pred --cC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-C--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 232 --SD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIED-G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 232 --~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+ ..-++.-|+|++..+++.+. .+-.++|-.++ + ..+....||...|+.|++. |.|+.|++.|-|.|-||
T Consensus 311 e~gg~a~GF~g~lw~~n~~~ii~~g~--~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~-psGeflLsvs~DQTTRl 387 (764)
T KOG1063|consen 311 EVGGSAGGFWGGLWSPNSNVIIAHGR--TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD-PSGEFLLSVSLDQTTRL 387 (764)
T ss_pred cccccccceeeEEEcCCCCEEEEecc--cCcEEEEeccCccceeeccccccccccceeeeec-CCCCEEEEeccccceee
Confidence 22 35889999986544444333 37899998333 2 2344567999999999996 78999999999999999
Q ss_pred EECCCCe----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC-------------------------------
Q 011452 305 LDVRNFE----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF------------------------------- 348 (485)
Q Consensus 305 WDv~tg~----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~------------------------------- 348 (485)
.-....+ .+....-|.....+++|-+..-.|+|+. ...+|+++.
T Consensus 388 Fa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaL 467 (764)
T KOG1063|consen 388 FARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPAL 467 (764)
T ss_pred ecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccc
Confidence 8766221 2223344777889999999777788988 677788861
Q ss_pred -------------CCcE----EE-----------------------------EeecCCCCCCCCCeeEEEECCCCCEEEE
Q 011452 349 -------------RGEL----VT-----------------------------SFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 349 -------------~G~l----l~-----------------------------tl~gH~~~~~~~~v~svafSpDG~~LaS 382 (485)
+|+. .. .|-||... |.++++||+|++|||
T Consensus 468 GLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE-----v~~l~~s~~gnliAS 542 (764)
T KOG1063|consen 468 GLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE-----VYALAISPTGNLIAS 542 (764)
T ss_pred cccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee-----EEEEEecCCCCEEee
Confidence 0111 11 13355443 999999999999999
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
+|++..- +---|+||+..+-+.++.|++|+ ..|+-+
T Consensus 543 aCKS~~~------ehAvI~lw~t~~W~~~~~L~~Hs--------------------------------------LTVT~l 578 (764)
T KOG1063|consen 543 ACKSSLK------EHAVIRLWNTANWLQVQELEGHS--------------------------------------LTVTRL 578 (764)
T ss_pred hhhhCCc------cceEEEEEeccchhhhheecccc--------------------------------------eEEEEE
Confidence 9984211 12469999999888889999997 289999
Q ss_pred EEcCCCCEEEEecCCCcEEEcc
Q 011452 463 FYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVklWd 484 (485)
+|||||++|+|.|+|.|+.||.
T Consensus 579 ~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 579 AFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred EECCCCcEEEEeecCceEEeee
Confidence 9999999999999999999995
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-20 Score=195.95 Aligned_cols=272 Identities=17% Similarity=0.153 Sum_probs=211.1
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 215 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ 215 (485)
-..|.|+|||.+...||.+= .+ ..+.||.++.+=+. .+.+....-.++.+++|. +|..|-|.+.++
T Consensus 25 Ps~I~slA~s~kS~~lAvsR----t~------g~IEiwN~~~~w~~--~~vi~g~~drsIE~L~W~--e~~RLFS~g~sg 90 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR----TD------GNIEIWNLSNNWFL--EPVIHGPEDRSIESLAWA--EGGRLFSSGLSG 90 (691)
T ss_pred ccceEEEEEeccCCceeeec----cC------CcEEEEccCCCcee--eEEEecCCCCceeeEEEc--cCCeEEeecCCc
Confidence 34699999999999988633 23 49999998765442 123333334567789997 456677888899
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEE--eecCCcceeEEEEEecCC
Q 011452 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS--FNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~t--l~~~~~~~~~V~f~~~~~ 290 (485)
+|--||+.+++.++.+. +..||+++++| +..+++++ .|+-+.+.++..++.... |.--.+++.+|+|. +++
T Consensus 91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~-~~~ 166 (691)
T KOG2048|consen 91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN-PTG 166 (691)
T ss_pred eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEec-CCc
Confidence 99999999999999886 67899999999 55555552 346899999998887643 33334788899997 677
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEe-------c-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 291 EKLLVKQENENLQILDVRNFELTEV-------S-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~-------l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
-+|++|+.|+-||+||+.++..+.. + ++..--||+|.|..|++ ||||. -|+|+.||.. |.+++++..|.
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~gTLiqS~~~h~ 245 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFGTLIQSHSCHD 245 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCcchhhhhhhhh
Confidence 8899999999999999999987662 1 23556899999999987 56665 9999999996 99999999998
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe----cCCCCCCCCcccccCCCCCCCC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI----RASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl----~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.- |.+++.+++++++.|++. |+.|-.....+++--... ..|.
T Consensus 246 ad-----Vl~Lav~~~~d~vfsaGv-----------d~~ii~~~~~~~~~~wv~~~~r~~h~------------------ 291 (691)
T KOG2048|consen 246 AD-----VLALAVADNEDRVFSAGV-----------DPKIIQYSLTTNKSEWVINSRRDLHA------------------ 291 (691)
T ss_pred cc-----eeEEEEcCCCCeEEEccC-----------CCceEEEEecCCccceeeeccccCCc------------------
Confidence 76 999999999999999987 677766666655331111 1232
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.+|.+++..++ .|+||+.|.++-+
T Consensus 292 --------------------hdvrs~av~~~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 292 --------------------HDVRSMAVIEN--ALISGGRDFTLAI 315 (691)
T ss_pred --------------------ccceeeeeecc--eEEecceeeEEEE
Confidence 28999999998 9999999998864
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=196.22 Aligned_cols=231 Identities=13% Similarity=0.173 Sum_probs=180.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeE----------EEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----------LYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~----------l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklW 262 (485)
.+..-|.|-.++|+.+..+.|-|||.....- -.+|. ...=.++.+++ .+.||++ +.|.+|.+|
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~---~~d~~i~lw 205 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSG---SDDHTICLW 205 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeec---cCCCcEEEE
Confidence 3445577888999999999999999764321 12343 33456688886 5666654 456899999
Q ss_pred ecCCCeE-------EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC--CCeeEEecccCCCceEEEEEcC-CC
Q 011452 263 SIEDGTV-------LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR--NFELTEVSRTEFMTPSAFIFLY-EN 332 (485)
Q Consensus 263 di~tG~~-------L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~--tg~~~~~l~gh~~~v~avaFsp-dg 332 (485)
|+..... ...|.+|...|..|+|.+.+...+.+.++|+.+.|||++ +.++..+..+|...|++++|+| ++
T Consensus 206 di~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~ 285 (422)
T KOG0264|consen 206 DINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNE 285 (422)
T ss_pred eccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCC
Confidence 9975433 356789999999999986666666667999999999999 6677888899999999999987 66
Q ss_pred cEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCE-EEEEecCCCCCCCCcCCCCeEEEEeCCC-
Q 011452 333 QLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDL-IISYCKADSDDPLAEGNAGSINISNILT- 407 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~-LaS~s~d~~~d~~~~~~DgtIklWdl~T- 407 (485)
.+|||+| |+||+|||++ .+.+.+|++|... |..|.|||+-+. |||++ .|+.++|||+..
T Consensus 286 ~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de-----v~~V~WSPh~etvLASSg-----------~D~rl~vWDls~i 349 (422)
T KOG0264|consen 286 FILATGSADKTVALWDLRNLNKPLHTFEGHEDE-----VFQVEWSPHNETVLASSG-----------TDRRLNVWDLSRI 349 (422)
T ss_pred ceEEeccCCCcEEEeechhcccCceeccCCCcc-----eEEEEeCCCCCceeEecc-----------cCCcEEEEecccc
Confidence 7888999 9999999996 7899999999987 999999998755 55544 489999999853
Q ss_pred Ce-------------EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEE
Q 011452 408 GK-------------CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYT 473 (485)
Q Consensus 408 Gk-------------~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaS 473 (485)
|+ ++.+=-||. ..|....|+|+.. +|+|
T Consensus 350 g~eq~~eda~dgppEllF~HgGH~--------------------------------------~kV~DfsWnp~ePW~I~S 391 (422)
T KOG0264|consen 350 GEEQSPEDAEDGPPELLFIHGGHT--------------------------------------AKVSDFSWNPNEPWTIAS 391 (422)
T ss_pred ccccChhhhccCCcceeEEecCcc--------------------------------------cccccccCCCCCCeEEEE
Confidence 21 123333444 2788899999886 5899
Q ss_pred ecCCCcEEEcc
Q 011452 474 GNRHGLVHVWS 484 (485)
Q Consensus 474 gs~DgtVklWd 484 (485)
.++|+.++||+
T Consensus 392 vaeDN~LqIW~ 402 (422)
T KOG0264|consen 392 VAEDNILQIWQ 402 (422)
T ss_pred ecCCceEEEee
Confidence 99999999996
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-20 Score=182.60 Aligned_cols=274 Identities=17% Similarity=0.172 Sum_probs=208.2
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
|+..+.+.|-+|-|+|.++.|+.+|+|| +++++++..-.+ ...|.++ ..+...+|- |-..+++
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDg----------slrlYdv~~~~l---~~~~~~~--~plL~c~F~--d~~~~~~ 70 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDG----------SLRLYDVPANSL---KLKFKHG--APLLDCAFA--DESTIVT 70 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccC----------cEEEEeccchhh---hhheecC--Cceeeeecc--CCceEEE
Confidence 4555788999999999999888888654 888999855544 2245542 345578995 4567788
Q ss_pred eeCCCcEEEeecCCCeEEEEE-cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 211 SAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
|+-|++||+.|+.+++...-. |+..|++|.+++..-.++++ +.|++||+||..+-.+.-++. ...+|.-....
T Consensus 71 G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsg--sWD~~ik~wD~R~~~~~~~~d----~~kkVy~~~v~ 144 (323)
T KOG1036|consen 71 GGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISG--SWDKTIKFWDPRNKVVVGTFD----QGKKVYCMDVS 144 (323)
T ss_pred eccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEc--ccCccEEEEeccccccccccc----cCceEEEEecc
Confidence 999999999999999876655 46799999999733333443 466999999987633444443 33355544455
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C----cEEEEeecCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLL 361 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G----~ll~tl~gH~~ 361 (485)
+.+|++|..|..+.+||+++-..-... ..-...+.+|++.|++.=++.+| ||-|.+=.++ - +....|..|..
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~ 224 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRL 224 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeec
Confidence 899999999999999999986542221 23456899999999999999999 9999887775 4 34668888876
Q ss_pred CCCC----CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 362 WHPD----CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 362 ~~~~----~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
-..+ -.||+|+|+|=-+++|||+. ||-|.+||+.+.|-+..|..-.
T Consensus 225 ~~~~~~~~yPVNai~Fhp~~~tfaTgGs-----------DG~V~~Wd~~~rKrl~q~~~~~------------------- 274 (323)
T KOG1036|consen 225 SEKDTEIIYPVNAIAFHPIHGTFATGGS-----------DGIVNIWDLFNRKRLKQLAKYE------------------- 274 (323)
T ss_pred ccCCceEEEEeceeEeccccceEEecCC-----------CceEEEccCcchhhhhhccCCC-------------------
Confidence 4322 13899999999999999875 8999999999999888885543
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
..|-+++|+-||..||.|+.
T Consensus 275 -------------------~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 275 -------------------TSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred -------------------CceEEEEeccCCCeEEEEec
Confidence 16899999999999999974
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.4e-21 Score=203.85 Aligned_cols=292 Identities=15% Similarity=0.146 Sum_probs=214.6
Q ss_pred cccCCCCcccccccccccccceEEEEEe-------------cCEEEEEeCCCeEEeeecccC---cEEE-----------
Q 011452 77 DTHDPKGHCSMVLPFLRKRSKIIEIVAA-------------RDIVFALAQSGVCAAFCRETN---QRIC----------- 129 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~s~V~~i~~s-------------~~~ias~s~dgtiklW~~~tG---~~l~----------- 129 (485)
|.-|++-..+. .-+|-|.+-|++|.-- ..-+.+.|.|+|||||+++.+ +.++
T Consensus 352 DvrD~~kvgk~-~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki 430 (1080)
T KOG1408|consen 352 DVRDVNKVGKC-SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKI 430 (1080)
T ss_pred eccccccccce-eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcC
Confidence 33344333333 3455677777766431 466889999999999998841 2111
Q ss_pred -----------------------EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 130 -----------------------FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 130 -----------------------tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
.+-. ....||+|+.|||||.||++- +|+++++.++..=.+ .+
T Consensus 431 ~y~d~~~q~~~d~~~~~fdka~~s~~d-~r~G~R~~~vSp~gqhLAsGD----------r~GnlrVy~Lq~l~~----~~ 495 (1080)
T KOG1408|consen 431 PYEDSTQQIMHDASAGIFDKALVSTCD-SRFGFRALAVSPDGQHLASGD----------RGGNLRVYDLQELEY----TC 495 (1080)
T ss_pred ccccCchhhhhhccCCcccccchhhcC-cccceEEEEECCCcceecccC----------ccCceEEEEehhhhh----hh
Confidence 0011 122499999999999998722 357899988754333 22
Q ss_pred eeeccccCceEEEEeCCC--CeEEEEeeCCCcEEEeecC-CCeEEEEEcC--CcEEEEEEcC--CceEEEEEcCCCCeeE
Q 011452 187 FESESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLK-NYTMLYSISD--KNVQEIKISP--GIMLLIFTKASGHVPL 259 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pn--G~~Las~s~D~tiKlWdl~-~g~~l~tl~~--~~V~~VafSp--g~~ll~sss~~~D~tI 259 (485)
|-..|-..+-.++|+.|+ .++|||+|.|+.|.|+|++ +|.++.|+.+ ..|.+|+|-- ++..++++.+| +.|
T Consensus 496 ~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD--ksi 573 (1080)
T KOG1408|consen 496 FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD--KSI 573 (1080)
T ss_pred heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc--hhh
Confidence 332344456688998664 5899999999999999997 7889999965 4799999993 45777777665 343
Q ss_pred EEEecCC----CeEEEEeecCCc-----ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---CCCceEEEE
Q 011452 260 KILSIED----GTVLKSFNHLLH-----RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---EFMTPSAFI 327 (485)
Q Consensus 260 klWdi~t----G~~L~tl~~~~~-----~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---h~~~v~ava 327 (485)
. ++... |.. |.-|.+ ..+.++. .|.-+.+++++.|.+|||+|+++|+..+.++| |.+..-.|.
T Consensus 574 m-Fr~~qk~~~g~~---f~r~t~t~~ktTlYDm~V-dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~ 648 (1080)
T KOG1408|consen 574 M-FRVNQKASSGRL---FPRHTQTLSKTTLYDMAV-DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVI 648 (1080)
T ss_pred h-eehhccccCcee---ccccccccccceEEEeee-CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEE
Confidence 2 22222 322 222222 2345554 35567777889999999999999999998854 777888999
Q ss_pred EcCCCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 328 FLYENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 328 Fspdg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.-|-|-++|++. |+|+.++|+ .|||+.++.||... |..+-|++|-+.|+|.+. ||-|-||.+
T Consensus 649 lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~-----VTG~kF~nDCkHlISvsg-----------DgCIFvW~l 712 (1080)
T KOG1408|consen 649 LDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEA-----VTGVKFLNDCKHLISVSG-----------DGCIFVWKL 712 (1080)
T ss_pred ECCCccEEEEeecCCceEEEEeccchhhhhhcCcchh-----eeeeeecccchhheeecC-----------CceEEEEEC
Confidence 999999999998 999999999 59999999999987 999999999999999987 799999987
Q ss_pred CC
Q 011452 406 LT 407 (485)
Q Consensus 406 ~T 407 (485)
..
T Consensus 713 p~ 714 (1080)
T KOG1408|consen 713 PL 714 (1080)
T ss_pred ch
Confidence 53
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-20 Score=183.08 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=208.0
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L 208 (485)
.+...+++.|-+|+|||.-+.++.++ +.| .++|+|++.. |++.. ... .++-+.+..|+|+ .||..+
T Consensus 21 ev~~pP~DsIS~l~FSP~~~~~~~A~---SWD------~tVR~wevq~~g~~~~-ka~--~~~~~PvL~v~Ws-ddgskV 87 (347)
T KOG0647|consen 21 EVPNPPEDSISALAFSPQADNLLAAG---SWD------GTVRIWEVQNSGQLVP-KAQ--QSHDGPVLDVCWS-DDGSKV 87 (347)
T ss_pred ecCCCcccchheeEeccccCceEEec---ccC------CceEEEEEecCCcccc-hhh--hccCCCeEEEEEc-cCCceE
Confidence 35566888999999999555555333 344 5999999965 66522 111 1344567789998 699999
Q ss_pred EEeeCCCcEEEeecCCCeEEE-EEcCCcEEEEEEcCCce--EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 209 TYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKISPGIM--LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~--ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
.+|+.|+.+|+|||.+++... -.|+..|..+.|=++.. +|+++ +-|+|||.||...-+++.++. +-.+++..+.
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG--SWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv 164 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG--SWDKTLKFWDTRSSNPVATLQ-LPERVYAADV 164 (347)
T ss_pred EeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec--ccccceeecccCCCCeeeeee-ccceeeehhc
Confidence 999999999999999998544 44788999999986443 55554 466999999999999998886 2356666654
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C--cEEEEeecC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--ELVTSFEDH 359 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G--~ll~tl~gH 359 (485)
. ...++++-.|..|.+++++++.... .-..-...+++|+.-+|++.+|-|+ .|.+.|-.++ + +--.+|.-|
T Consensus 165 ~---~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCH 241 (347)
T KOG0647|consen 165 L---YPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCH 241 (347)
T ss_pred c---CceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEe
Confidence 3 3467778899999999999764211 1111234689999999999999999 9999999996 6 455678888
Q ss_pred CCCC---C-CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 360 LLWH---P-DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 360 ~~~~---~-~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
.... + -..||+|+|.|.-..|++++. ||++..||-....-|++.+-|.
T Consensus 242 R~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-----------DGtf~FWDkdar~kLk~s~~~~----------------- 293 (347)
T KOG0647|consen 242 RSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-----------DGTFSFWDKDARTKLKTSETHP----------------- 293 (347)
T ss_pred ccCCCCCCceEEecceEeecccceEEEecC-----------CceEEEecchhhhhhhccCcCC-----------------
Confidence 7311 0 123899999999999999875 8999999977666666666665
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
..|++..|+-+|+++|=+
T Consensus 294 ---------------------qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 294 ---------------------QPITCCSFNRNGSIFAYA 311 (347)
T ss_pred ---------------------CccceeEecCCCCEEEEE
Confidence 389999999999987654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-20 Score=191.32 Aligned_cols=281 Identities=13% Similarity=0.187 Sum_probs=216.1
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc--cCceEEEEeCCCCe-EEEEeeC
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL--KWPGFVEFDDVNGK-VLTYSAQ 213 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~pnG~-~Las~s~ 213 (485)
..|+||-|.|.-+.|++++ .| ++++|+.| +||.+. +.+.-++ -.+...+|. |+|+ .+.+++.
T Consensus 214 ~~I~sv~FHp~~plllvaG----~d------~~lrifqv-DGk~N~---~lqS~~l~~fPi~~a~f~-p~G~~~i~~s~r 278 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAG----LD------GTLRIFQV-DGKVNP---KLQSIHLEKFPIQKAEFA-PNGHSVIFTSGR 278 (514)
T ss_pred CCceEEEecCCCceEEEec----CC------CcEEEEEe-cCccCh---hheeeeeccCccceeeec-CCCceEEEeccc
Confidence 4799999999999999866 45 69999986 888754 2332111 224468897 7998 8999999
Q ss_pred CCcEEEeecCCCeEEE-----EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 214 DSIYKVFDLKNYTMLY-----SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~-----tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
-.-+..|||.+.+... ......+....+||++.+++.++.. +-|.|....|++.+.+|+- .+.+..+.|+ .
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~--G~I~lLhakT~eli~s~Ki-eG~v~~~~fs-S 354 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN--GHIHLLHAKTKELITSFKI-EGVVSDFTFS-S 354 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC--ceEEeehhhhhhhhheeee-ccEEeeEEEe-c
Confidence 9999999999887432 2223467789999744444443333 7999999999999999983 3678899998 5
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-------CcEEEEeecC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVAVWNFR-------GELVTSFEDH 359 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~-~v~avaFspdg~llaS~s-D~TIklWd~~-------G~ll~tl~gH 359 (485)
++..|++++.+|.|-+||+++..|++.+..... .-.+++.|++|++||+|| -|.|-|||.+ -+.+.++..-
T Consensus 355 dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 355 DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 678888899999999999999999998754321 336688899999999999 8999999942 3467777655
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
... |.++.|+||+|+||.+|. ..+.++||=.+.+-..-..+...
T Consensus 435 tt~-----Itsl~Fn~d~qiLAiaS~---------~~knalrLVHvPS~TVFsNfP~~---------------------- 478 (514)
T KOG2055|consen 435 TTA-----ITSLQFNHDAQILAIASR---------VKKNALRLVHVPSCTVFSNFPTS---------------------- 478 (514)
T ss_pred hee-----eeeeeeCcchhhhhhhhh---------ccccceEEEeccceeeeccCCCC----------------------
Confidence 544 999999999999999985 35788999887654333333222
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.-+..|++|+|||.|-+||-|+++|.|+||.+
T Consensus 479 -------------n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 479 -------------NTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred -------------CCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence 112349999999999999999999999999974
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-20 Score=184.89 Aligned_cols=241 Identities=14% Similarity=0.148 Sum_probs=179.1
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.+..++|||...-.|+.+|.|+|||+|++++ |...-.- ++..|.+|+||.++..+.+++ -|+.+|+||+++|+.
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~--~Dk~~k~wDL~S~Q~ 106 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG--CDKQAKLWDLASGQV 106 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec--cCCceEEEEccCCCe
Confidence 3458999965667777899999999999986 5543221 356899999997666666654 458999999999965
Q ss_pred EEEeecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 270 LKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
. .+.-|...++.+.|++.-+ +.|++||+|+|||.||.+...++.++. -...+++... ...+++.+. ++.|.+++
T Consensus 107 ~-~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vyn 182 (347)
T KOG0647|consen 107 S-QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYN 182 (347)
T ss_pred e-eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc--cCceeEEEecCCcEEEEE
Confidence 4 5566889999999986544 356668999999999999998877763 2235555533 344566666 99999999
Q ss_pred CC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC--eEEEEecCCCCCCCC
Q 011452 348 FR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG--KCLAKIRASNGLPAE 423 (485)
Q Consensus 348 ~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG--k~l~tl~gH~~~~~~ 423 (485)
++ +. .....+.-..|+ +++|++-+|++.-|-||- .|.+-|-.+..+ +--.+|+-|..
T Consensus 183 L~n~~te~k~~~SpLk~Q----~R~va~f~d~~~~alGsi-----------EGrv~iq~id~~~~~~nFtFkCHR~---- 243 (347)
T KOG0647|consen 183 LENPPTEFKRIESPLKWQ----TRCVACFQDKDGFALGSI-----------EGRVAIQYIDDPNPKDNFTFKCHRS---- 243 (347)
T ss_pred cCCCcchhhhhcCcccce----eeEEEEEecCCceEeeee-----------cceEEEEecCCCCccCceeEEEecc----
Confidence 96 32 334444444443 899999999988888876 688888888877 55567777762
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+. .. -.-| .|.+|+|+|.-.+|||++.||+.-.||
T Consensus 244 ------~~~------------~~----~~VY---aVNsi~FhP~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 244 ------TNS------------VN----DDVY---AVNSIAFHPVHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ------CCC------------CC----CceE---EecceEeecccceEEEecCCceEEEec
Confidence 110 00 0011 788999999999999999999999998
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=193.96 Aligned_cols=276 Identities=11% Similarity=0.064 Sum_probs=204.6
Q ss_pred EEEEEeCCCe-EEeeecccCcEEEEeecCCcccEEEE-EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 107 IVFALAQSGV-CAAFCRETNQRICFLNVTADEVIRSL-FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 107 ~ias~s~dgt-iklW~~~tG~~l~tl~g~~~~~i~sv-~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
++.+.|.|.. |..||+.||..+-+..++-...=.++ +.++ ++++++.. +=..+.+|.+..-+... +
T Consensus 9 ~~sssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~---------~rp~l~vw~i~k~~~~~-q 76 (476)
T KOG0646|consen 9 VCSSSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQL---------KRPLLHVWEILKKDQVV-Q 76 (476)
T ss_pred EEeccCCCCcceeEEecCCCceeEEecCcccccchhhhhhch--hheeeecc---------cCccccccccCchhhhh-h
Confidence 4555666666 99999999998888877511111111 2222 56665442 22477888873322211 0
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklW 262 (485)
...- -+-+..++-+ |+|-+|+.|..-+.+.+|.+.+|.+|+.++.| .|.+++||.+++.+++++ .|+-|.+|
T Consensus 77 ~~v~---Pg~v~al~s~-n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs--kDg~V~vW 150 (476)
T KOG0646|consen 77 YIVL---PGPVHALASS-NLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS--KDGAVLVW 150 (476)
T ss_pred hccc---ccceeeeecC-CCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC--CCccEEEE
Confidence 0000 1123356655 79999998878999999999999999999764 799999998777777755 56899999
Q ss_pred ecC---------CCeEEEEeecCCcceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC
Q 011452 263 SIE---------DGTVLKSFNHLLHRNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (485)
Q Consensus 263 di~---------tG~~L~tl~~~~~~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg 332 (485)
++- +=+.+..|.+|.-.|..+.... +.+.+|+++|+|.|+|+||+..|.++.+.. -...+.|++..|-.
T Consensus 151 ~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~av~lDpae 229 (476)
T KOG0646|consen 151 LLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIKAVALDPAE 229 (476)
T ss_pred EEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcceeEEEcccc
Confidence 864 3356777888877777665431 235799999999999999999999888763 34589999999999
Q ss_pred cEEEEEe-CCcEEEEeC-----------------CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 333 QLFLTFR-NRTVAVWNF-----------------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~-----------------~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
+.+--|. +|.|-+-++ +++.+..|.||... ..|..++++-||.+|+||+.
T Consensus 230 ~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~---~~ITcLais~DgtlLlSGd~--------- 297 (476)
T KOG0646|consen 230 RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENE---SAITCLAISTDGTLLLSGDE--------- 297 (476)
T ss_pred cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCC---cceeEEEEecCccEEEeeCC---------
Confidence 9998888 998877664 23456789999872 22999999999999999987
Q ss_pred CCCCeEEEEeCCCCeEEEEec
Q 011452 395 GNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~ 415 (485)
||+|.|||+.+.||++++.
T Consensus 298 --dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 298 --DGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred --CCCEEEEecchHHHHHHHh
Confidence 7999999999999999996
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=178.45 Aligned_cols=279 Identities=14% Similarity=0.122 Sum_probs=197.7
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeeccc-----CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET-----NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t-----G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
|...|..+.|+ |..||+.+.|++|+||+++. -++|+. |..-+ --.-|+|.||-..++..-. ..+
T Consensus 85 H~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~d-hpT~V~FapDc~s~vv~~~--~g~----- 155 (420)
T KOG2096|consen 85 HKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYD-HPTRVVFAPDCKSVVVSVK--RGN----- 155 (420)
T ss_pred cCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCC-CceEEEECCCcceEEEEEc--cCC-----
Confidence 66778888888 99999999999999999763 223431 22112 2467999999998876443 333
Q ss_pred eeEEEEeEe---ccCCcCcccc-----eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cE
Q 011452 167 CRSTRIEYI---RRGKPDAGFA-----LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NV 236 (485)
Q Consensus 167 ~~t~~lw~i---~~G~~~~~~~-----lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V 236 (485)
++.++-+ ..|..-.... -|+..+..-+-.+-.- .++++|+|+|.|.+|-||+++ |+.|.++..+ .-
T Consensus 156 --~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 156 --KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred --EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 5555554 3343311000 0111111111123333 589999999999999999998 9999998643 45
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecC---CCeE-----EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIE---DGTV-----LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~---tG~~-----L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
...+.||+|++++++.-- --||+|.+- +|+. ...|+||+..|.+.+|+ ++.+++++.|.||++||||..
T Consensus 232 ~~aavSP~GRFia~~gFT--pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs-n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGFT--PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS-NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred cceeeCCCCcEEEEecCC--CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeC-CCcceeEEEecCCcEEEeecc
Confidence 678999988877765443 459999753 4432 45788999999999997 667888999999999999976
Q ss_pred CC-------eeEEec----ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 309 NF-------ELTEVS----RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 309 tg-------~~~~~l----~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
-. +.+++. ..-...+-.++.+|+|+.||.+...+++++..+ |+-.-+|+.-... | |.+|+|+||
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~---~-Is~is~~~~ 384 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST---T-ISSISYSSD 384 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcC---c-eeeEEecCC
Confidence 21 223222 222345568899999999998888899999996 9988888753222 3 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|++||+++ |..+++.-
T Consensus 385 g~~~atcG------------dr~vrv~~ 400 (420)
T KOG2096|consen 385 GKYIATCG------------DRYVRVIR 400 (420)
T ss_pred CcEEeeec------------ceeeeeec
Confidence 99999987 57888764
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-18 Score=184.33 Aligned_cols=273 Identities=12% Similarity=0.097 Sum_probs=214.7
Q ss_pred CcccccccccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEE-EEeecCCcccEEEEEEeeCCCEEEEEEeecC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYAS 159 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l-~tl~g~~~~~i~sv~~spdg~~Las~S~d~~ 159 (485)
+|.|-|--+ +.++|.+++|+ ...||.+=.||.|.+||+..+-++ .++.|+.+..|-+|+|.+.| .|.|++.
T Consensus 15 vhrcrf~d~--~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~-RLFS~g~--- 88 (691)
T KOG2048|consen 15 VHRCRFVDY--KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG-RLFSSGL--- 88 (691)
T ss_pred EEEEEEEee--eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC-eEEeecC---
Confidence 445556556 88999999999 566999999999999999876644 46778788899999999554 5777664
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----CC
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DK 234 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~~ 234 (485)
+ ..+.-||+.+++. +...+ ..+.+|+++.. |.+..|+-|.+||.+...+..+++..|... ..
T Consensus 89 -s------g~i~EwDl~~lk~-----~~~~d~~gg~IWsiai~-p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s 155 (691)
T KOG2048|consen 89 -S------GSITEWDLHTLKQ-----KYNIDSNGGAIWSIAIN-PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS 155 (691)
T ss_pred -C------ceEEEEecccCce-----eEEecCCCcceeEEEeC-CccceEEeecCCceEEEEecCCceEEEEeecccccc
Confidence 3 4888999999887 33332 23557789997 688899999999999999998888776542 36
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee----c----CCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----H----LLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~----~----~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
.|.+|+|+|.+..+++++ .|+-|++||...|+.++-.. + -.--+|+|.|.. ++.|++|-.-|+|+.||
T Consensus 156 RvLslsw~~~~~~i~~Gs--~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr--d~tI~sgDS~G~V~FWd 231 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGS--IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR--DSTIASGDSAGTVTFWD 231 (691)
T ss_pred eEEEEEecCCccEEEecc--cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee--cCcEEEecCCceEEEEc
Confidence 899999999888555543 45899999999999988211 1 112368999974 67888888999999999
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc---EEE--EeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE---LVT--SFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~---ll~--tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
..+|.+++...-|...|.+++..+++..+.+++ |++|-.+-..+. -+. ....|... |++++..++ .|
T Consensus 232 ~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd-----vrs~av~~~--~l 304 (691)
T KOG2048|consen 232 SIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD-----VRSMAVIEN--AL 304 (691)
T ss_pred ccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc-----ceeeeeecc--eE
Confidence 999999999999999999999999999999999 999888887533 222 23344433 899999888 88
Q ss_pred EEEec
Q 011452 381 ISYCK 385 (485)
Q Consensus 381 aS~s~ 385 (485)
+||+.
T Consensus 305 ~sgG~ 309 (691)
T KOG2048|consen 305 ISGGR 309 (691)
T ss_pred Eecce
Confidence 88876
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=177.30 Aligned_cols=239 Identities=15% Similarity=0.195 Sum_probs=174.4
Q ss_pred eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe----EEEEE--cCCcEEEEEEc-C--CceEEEEEcCCCCe
Q 011452 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSI--SDKNVQEIKIS-P--GIMLLIFTKASGHV 257 (485)
Q Consensus 187 f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~----~l~tl--~~~~V~~VafS-p--g~~ll~sss~~~D~ 257 (485)
|..+|..-+-.|.|| +-|+.+|+||.|++|||||.+..+ +.-.. |+..|+.|.+- | |+.+|+. +.|+
T Consensus 8 i~s~h~DlihdVs~D-~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~c---S~Dr 83 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFD-FYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATC---SYDR 83 (361)
T ss_pred cccCCcceeeeeeec-ccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEE---ecCC
Confidence 333333334589997 799999999999999999976433 33333 45689999998 6 7666654 4669
Q ss_pred eEEEEecC---------CCeEEEEeecCCcceeEEEEEecC-CCEEEEEeCCCcEEEEECCCC------eeEEec-----
Q 011452 258 PLKILSIE---------DGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNF------ELTEVS----- 316 (485)
Q Consensus 258 tIklWdi~---------tG~~L~tl~~~~~~~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg------~~~~~l----- 316 (485)
|++||.=. .-....+|......+..|.|.|.. |=+|++.+.||+|||++.-.- .++..+
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~ 163 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID 163 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence 99999631 123456777666778899998654 445666799999999975432 222222
Q ss_pred --ccCCCceEEEEEcC---CCcEEEEEeCC------cEEEEeCC--C-cE--EEEeecCCCCCCCCCeeEEEECCC----
Q 011452 317 --RTEFMTPSAFIFLY---ENQLFLTFRNR------TVAVWNFR--G-EL--VTSFEDHLLWHPDCNTNNIYITSD---- 376 (485)
Q Consensus 317 --~gh~~~v~avaFsp---dg~llaS~sD~------TIklWd~~--G-~l--l~tl~gH~~~~~~~~v~svafSpD---- 376 (485)
..+.....+|.++| .-++||.|+|. .++||... | ++ +.+|.+|... |.+|+|.|+
T Consensus 164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp-----I~di~wAPn~Gr~ 238 (361)
T KOG2445|consen 164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP-----IRDISWAPNIGRS 238 (361)
T ss_pred CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc-----ceeeeeccccCCc
Confidence 23444667777776 46789998866 99999983 5 43 5689999988 999999996
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--------------------EEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGK--------------------CLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk--------------------~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
-++||.+|+ || |+||++..-. .+..+.+|+
T Consensus 239 y~~lAvA~k-----------Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~------------------ 288 (361)
T KOG2445|consen 239 YHLLAVATK-----------DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHN------------------ 288 (361)
T ss_pred eeeEEEeec-----------Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCC------------------
Confidence 478999998 78 9999987311 112222332
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..||.|.|+--|.+|+|.+.||+||||.
T Consensus 289 --------------------~~VWrv~wNmtGtiLsStGdDG~VRLWk 316 (361)
T KOG2445|consen 289 --------------------GEVWRVRWNMTGTILSSTGDDGCVRLWK 316 (361)
T ss_pred --------------------CceEEEEEeeeeeEEeecCCCceeeehh
Confidence 3899999999999999999999999995
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=189.17 Aligned_cols=313 Identities=13% Similarity=0.140 Sum_probs=232.2
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
|--|.+.|.+|... |+.||+|+.|||+|+|.+.||.|++++.. ++.|+||+|+|.++.=+.+-+.+ .
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~--d~~I~~vaw~P~~~~~vLAvA~~--~------- 464 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF--DSEIRSVAWNPLSDLCVLAVAVG--E------- 464 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee--cceeEEEEecCCCCceeEEEEec--C-------
Confidence 44588889998887 99999999999999999999999999986 66899999999998644433322 2
Q ss_pred EEEEeEeccCCcC---cccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CCeEEEEEcCCcEEEE
Q 011452 169 STRIEYIRRGKPD---AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDKNVQEI 239 (485)
Q Consensus 169 t~~lw~i~~G~~~---~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g~~l~tl~~~~V~~V 239 (485)
.+-|-+..-|.-. .+..+|.. + |+ -...|.++-.|.-. -|-|+..-+...|..|
T Consensus 465 ~~~ivnp~~G~~~e~~~t~ell~~----------~--~~-----~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v 527 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGPTKELLAS----------A--PN-----ESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV 527 (733)
T ss_pred ceEEeCccccchhhhcchhhhhhc----------C--CC-----ccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence 2222222222110 00111211 0 00 01234466677633 1223333357899999
Q ss_pred EEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 240 KIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 240 afS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
.++ .|..|++.+.++....|-|-++..++.+-.|.-.-+.+..|.|.+ .--+|+++ .-..|||||+..+++.+.+..
T Consensus 528 tWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHP-s~p~lfVa-Tq~~vRiYdL~kqelvKkL~t 605 (733)
T KOG0650|consen 528 TWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHP-SKPYLFVA-TQRSVRIYDLSKQELVKKLLT 605 (733)
T ss_pred eeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecC-CCceEEEE-eccceEEEehhHHHHHHHHhc
Confidence 999 577888777777777888888887777767754447788999984 44455554 236799999999998888888
Q ss_pred CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 319 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+|+.++.+|.|.-|+-++ |+.+-.+|++ .+..++|.-|... |++|+|.+-=-+++|||.
T Consensus 606 g~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~a-----vr~Va~H~ryPLfas~sd---------- 670 (733)
T KOG0650|consen 606 GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKA-----VRSVAFHKRYPLFASGSD---------- 670 (733)
T ss_pred CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhh-----hhhhhhccccceeeeecC----------
Confidence 888999999999999999999 9999888986 6789999999877 999999999999999986
Q ss_pred CCCeEEEEe------CCCC---eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 396 NAGSINISN------ILTG---KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 396 ~DgtIklWd------l~TG---k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
||++-|+. +... -.|+.|+||.- .|. ..|..+.|+|
T Consensus 671 -Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~-----------------------~~~-----------~gVLd~~wHP 715 (733)
T KOG0650|consen 671 -DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEK-----------------------TND-----------LGVLDTIWHP 715 (733)
T ss_pred -CCcEEEEeeeeehhhhcCCceEeeeeccCcee-----------------------ecc-----------cceEeecccC
Confidence 79998884 2111 14678889972 111 2788899999
Q ss_pred CCCEEEEecCCCcEEEc
Q 011452 467 DRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklW 483 (485)
.-..|+|++.|||||||
T Consensus 716 ~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 716 RQPWLFSAGADGTIRLF 732 (733)
T ss_pred CCceEEecCCCceEEee
Confidence 99999999999999999
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=176.48 Aligned_cols=205 Identities=15% Similarity=0.102 Sum_probs=160.2
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--E-----EEEE----cC------CcEEEEEEcC--CceEEEEE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--M-----LYSI----SD------KNVQEIKISP--GIMLLIFT 251 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~-----l~tl----~~------~~V~~VafSp--g~~ll~ss 251 (485)
|.+.+.++..++..|+++.||+.|+.|-||||++-. . .... .+ ..|.++-+=| .||+.++
T Consensus 42 HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss- 120 (397)
T KOG4283|consen 42 HGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS- 120 (397)
T ss_pred CCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc-
Confidence 345566788888899999999999999999998644 1 1111 11 2577777776 6776543
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC-CEEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~-~~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
+.|.|+|+||..|-+...+|+- .+.|++-+.+|-.- ..|++ +-.|-.|||=|+++|.+-++|.||.+.|-+|.|+
T Consensus 121 --SFDhtlKVWDtnTlQ~a~~F~m-e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Ws 197 (397)
T KOG4283|consen 121 --SFDHTLKVWDTNTLQEAVDFKM-EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWS 197 (397)
T ss_pred --cccceEEEeecccceeeEEeec-CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEec
Confidence 5679999999999998888872 24565555543322 34555 4589999999999999999999999999999999
Q ss_pred CCCcE-EEEEe-CCcEEEEeCC--CcEEEEeecCCC---------CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 330 YENQL-FLTFR-NRTVAVWNFR--GELVTSFEDHLL---------WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 330 pdg~l-laS~s-D~TIklWd~~--G~ll~tl~gH~~---------~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
|-... |+|++ |++||+||++ --|..+|+.|.. ....+.|+++||++||.+|++.+.
T Consensus 198 p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----------- 266 (397)
T KOG4283|consen 198 PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----------- 266 (397)
T ss_pred cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC-----------
Confidence 98886 56777 9999999996 468899988872 222355899999999999999887
Q ss_pred CCeEEEEeCCCCeE
Q 011452 397 AGSINISNILTGKC 410 (485)
Q Consensus 397 DgtIklWdl~TGk~ 410 (485)
|..+++|+...|+-
T Consensus 267 d~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 267 DDRIRVWNMESGRN 280 (397)
T ss_pred ccceEEeecccCcc
Confidence 78999999998874
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.7e-18 Score=170.96 Aligned_cols=270 Identities=12% Similarity=0.119 Sum_probs=179.7
Q ss_pred EEEEeCCCeEEeeeccc-Cc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCcc
Q 011452 108 VFALAQSGVCAAFCRET-NQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAG 183 (485)
Q Consensus 108 ias~s~dgtiklW~~~t-G~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~ 183 (485)
.++.++|+.|.+|++.+ |+ ++.++.. ......++++|||+.|..++. .+ ..+.+|++. .|++.
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~spd~~~lyv~~~--~~-------~~i~~~~~~~~g~l~-- 71 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVISPDKRHLYVGVR--PE-------FRVLSYRIADDGALT-- 71 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEECCCCCEEEEEEC--CC-------CcEEEEEECCCCceE--
Confidence 44557899999999974 44 5555543 234678999999999877552 22 467778874 45441
Q ss_pred cceeee-ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-Ce---EEEEEcC-CcEEEEEEcCCceEE-EEEcCCC
Q 011452 184 FALFES-ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YT---MLYSISD-KNVQEIKISPGIMLL-IFTKASG 255 (485)
Q Consensus 184 ~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~---~l~tl~~-~~V~~VafSpg~~ll-~sss~~~ 255 (485)
+... .....|..|+|+ |+|+.|.+++ .++.|.+|++++ |. .+..+.+ .....++|+|++..+ ++. ..
T Consensus 72 --~~~~~~~~~~p~~i~~~-~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~--~~ 146 (330)
T PRK11028 72 --FAAESPLPGSPTHISTD-HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPC--LK 146 (330)
T ss_pred --EeeeecCCCCceEEEEC-CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEee--CC
Confidence 1111 123467789998 7998877765 489999999963 42 3344433 357789999866544 443 34
Q ss_pred CeeEEEEecCCCeEEE-------EeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC--CCe--eEEeccc-----
Q 011452 256 HVPLKILSIEDGTVLK-------SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NFE--LTEVSRT----- 318 (485)
Q Consensus 256 D~tIklWdi~tG~~L~-------tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~--tg~--~~~~l~g----- 318 (485)
+.+|.+||+.+...+. ++.. ......++|+ |++.++.+.. .+++|.+||+. +++ .++.+..
T Consensus 147 ~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 147 EDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred CCEEEEEEECCCCcccccCCCceecCC-CCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 5799999998733332 1111 1234578886 7788887876 59999999997 333 3443322
Q ss_pred -CCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 319 -EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 319 -h~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+..++..++|+|||++|.++. +++|.+|+++ ++. .++.+|..... + .+.++|+|||++|+.++.
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~-~-p~~~~~~~dg~~l~va~~-------- 293 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTET-Q-PRGFNIDHSGKYLIAAGQ-------- 293 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccc-c-CCceEECCCCCEEEEEEc--------
Confidence 122445688999999888874 8999999984 432 23444432110 1 468999999999998875
Q ss_pred cCCCCeEEEEeC--CCCeE
Q 011452 394 EGNAGSINISNI--LTGKC 410 (485)
Q Consensus 394 ~~~DgtIklWdl--~TGk~ 410 (485)
.+++|.+|++ .+|..
T Consensus 294 --~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 294 --KSHHISVYEIDGETGLL 310 (330)
T ss_pred --cCCcEEEEEEcCCCCcE
Confidence 2699999987 45653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-17 Score=174.87 Aligned_cols=325 Identities=13% Similarity=0.091 Sum_probs=236.7
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCC--------eEEeeecccCcEEEEeecCCcccEEE
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSG--------VCAAFCRETNQRICFLNVTADEVIRS 141 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dg--------tiklW~~~tG~~l~tl~g~~~~~i~s 141 (485)
=+.|..|-.|..-+.|+..-|+ ...+|+|-..| .+|+||..+=+-|..++. -+..|.+
T Consensus 94 e~~Qr~y~GH~ddikc~~vHPd-------------ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~-f~~GV~~ 159 (626)
T KOG2106|consen 94 ERSQRHYLGHNDDIKCMAVHPD-------------RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGF-FDRGVTC 159 (626)
T ss_pred hhhcccccCCCCceEEEeecCC-------------ceeeccCcccccCCCcCCCeeeecccccceeeeeecc-cccccee
Confidence 3567889999998888888887 34444444444 489999877777777775 4557999
Q ss_pred EEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEe
Q 011452 142 LFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (485)
Q Consensus 142 v~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlW 220 (485)
|+|||- +-.+..+ .|-+.+ +-..+|+.+.+.... ++-.. ..-+...+|.|-+-.++.+++ -+-+-.|
T Consensus 160 vaFsk~~~G~~l~~-vD~s~~------h~lSVWdWqk~~~~~--~vk~s--ne~v~~a~FHPtd~nliit~G-k~H~~Fw 227 (626)
T KOG2106|consen 160 VAFSKINGGSLLCA-VDDSNP------HMLSVWDWQKKAKLG--PVKTS--NEVVFLATFHPTDPNLIITCG-KGHLYFW 227 (626)
T ss_pred eeecccCCCceEEE-ecCCCc------cccchhhchhhhccC--cceec--cceEEEEEeccCCCcEEEEeC-CceEEEE
Confidence 999885 3333333 344455 678899987766522 11111 112335789876777777776 6788999
Q ss_pred ecCCCeEEEEE---c---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEE
Q 011452 221 DLKNYTMLYSI---S---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 221 dl~~g~~l~tl---~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll 294 (485)
++.++.+..+- . ...|.+|.|.+++..++. |++++|-||+..+-+.-++...|.+.+.++... -+++|+
T Consensus 228 ~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg---DS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~l--r~Gtll 302 (626)
T KOG2106|consen 228 TLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG---DSGGNILIWSKGTNRISKQVHAHDGGVFSLCML--RDGTLL 302 (626)
T ss_pred EccCCceEEEeeccccccceEEEEEEEcCCCCEEee---cCCceEEEEeCCCceEEeEeeecCCceEEEEEe--cCccEe
Confidence 99998876443 2 257999999998888876 455899999986666666655788888888764 378999
Q ss_pred EEeCCCcEEEEECC--CCe--------------------------------------eEEecccCCCceEEEEEcCCCcE
Q 011452 295 VKQENENLQILDVR--NFE--------------------------------------LTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 295 s~s~D~tIkIWDv~--tg~--------------------------------------~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|+.|..|-+||-. +-+ ...+..||.+..+.++..|+..+
T Consensus 303 SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q 382 (626)
T KOG2106|consen 303 SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ 382 (626)
T ss_pred ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh
Confidence 99999999999821 110 01112478889999999999999
Q ss_pred EEEEe-CCcEEEEeCCCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 335 FLTFR-NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
|+|++ |++++||| .-+++-+- .+. . +.++.|.|-| .||-|+. .|---+-|.+|...++
T Consensus 383 ~~T~gqdk~v~lW~-~~k~~wt~~~~d--~-----~~~~~fhpsg-~va~Gt~-----------~G~w~V~d~e~~~lv~ 442 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN-DHKLEWTKIIED--P-----AECADFHPSG-VVAVGTA-----------TGRWFVLDTETQDLVT 442 (626)
T ss_pred eeeccCcceEEEcc-CCceeEEEEecC--c-----eeEeeccCcc-eEEEeec-----------cceEEEEecccceeEE
Confidence 99999 99999999 54444332 221 2 6799999999 8888886 5877788888744433
Q ss_pred EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 413 KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 413 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+ |.++ +.++.|.|+|||.+||-||.|+.|.|+.
T Consensus 443 -~--~~d~------------------------------------~~ls~v~ysp~G~~lAvgs~d~~iyiy~ 475 (626)
T KOG2106|consen 443 -I--HTDN------------------------------------EQLSVVRYSPDGAFLAVGSHDNHIYIYR 475 (626)
T ss_pred -E--EecC------------------------------------CceEEEEEcCCCCEEEEecCCCeEEEEE
Confidence 3 4321 3899999999999999999999999874
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.6e-18 Score=191.05 Aligned_cols=239 Identities=12% Similarity=0.102 Sum_probs=182.4
Q ss_pred CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC--CcCcccceeeeccccCceEEEEeCCCCeEEEEe
Q 011452 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG--KPDAGFALFESESLKWPGFVEFDDVNGKVLTYS 211 (485)
Q Consensus 134 ~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~ 211 (485)
.|.+....|.|.|+|+.|.+++.+ +.|++|....- ++. .... +..-+.+++ .++..|++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsd----------g~ir~~~~~sd~e~P~----ti~~-~g~~v~~ia---~~s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSD----------GDIRKWKTNSDEEEPE----TIDI-SGELVSSIA---CYSNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCC----------CceEEeecCCcccCCc----hhhc-cCceeEEEe---ecccceEEe
Confidence 477778999999999999987743 47888875222 110 0000 111122333 345688999
Q ss_pred eCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 212 AQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 212 s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
+.|+||.+....+++.--.|. .-++..++|+-+|..+++++ +|-.|||.+..++...+++++|...|..|.|. |.
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~-p~ 149 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYD-PK 149 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEc-CC
Confidence 999999999998877432221 34789999996555555544 45899999999999999999999999999997 56
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccC--------CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTE--------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh--------~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
++.|++++-||+|+|||++++.+..++.+- ...+..++|+|+|-.||.-. |++||+++.. ++....|.+.
T Consensus 150 ~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 150 GNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred CCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 778888899999999999999998887542 22456678999965555555 9999999996 8888888765
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
... ..+..+.|||+|+|||+++. ||-|-|||++|
T Consensus 230 ~~s---s~~~~~~wsPnG~YiAAs~~-----------~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSS---SKFSDLQWSPNGKYIAASTL-----------DGQILVWNVDT 263 (933)
T ss_pred ccc---cceEEEEEcCCCcEEeeecc-----------CCcEEEEeccc
Confidence 433 22788999999999999987 79999999986
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=184.06 Aligned_cols=245 Identities=14% Similarity=0.157 Sum_probs=182.2
Q ss_pred ecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--------cCCcCcccceeeeccccCceEEEEeCC
Q 011452 132 NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--------RGKPDAGFALFESESLKWPGFVEFDDV 203 (485)
Q Consensus 132 ~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--------~G~~~~~~~lf~~~~~~~~~~V~Fs~p 203 (485)
...|++-|+.+-|-|++..||.+- +.. ..+.|||.. .|++..-..|+.++.-+ ..++|+..
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~---t~~------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg--~glsWn~~ 188 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATK---TSS------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEG--YGLSWNRQ 188 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEec---CCC------CCEEEEEeccCCCcccccccCCCceEEEeecccc--cccccccc
Confidence 345888999999999999887633 222 578899862 12222212455553212 24677655
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeE---------EEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC--CCeEEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTM---------LYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE--DGTVLK 271 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~---------l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~--tG~~L~ 271 (485)
.--.|++++.|++|.+||+..+.. .++.|...|.+|+|+| ...+..+.+ .|+.+.|||+. +-++-+
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCcc
Confidence 555788999999999999985443 2333556899999997 555555544 45899999999 556667
Q ss_pred EeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcE-EEEEe-CCcEEEEe
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWN 347 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~l-laS~s-D~TIklWd 347 (485)
+-..|...+.+|+|. |+++.+++ +|.|+||+|||+++- +++.++.+|...|..|-|||.... |||++ |+.+.|||
T Consensus 267 ~~~ah~~~vn~~~fn-p~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWD 345 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFN-PFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWD 345 (422)
T ss_pred cccccCCceeEEEeC-CCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEe
Confidence 778999999999998 55666555 579999999999984 578999999999999999997765 55556 99999999
Q ss_pred CC--CcE-------------EEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 348 FR--GEL-------------VTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 348 ~~--G~l-------------l~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+. |+. +.+=-||..- |+.+.+.|+--++ +|.+. |+++.||...
T Consensus 346 ls~ig~eq~~eda~dgppEllF~HgGH~~k-----V~DfsWnp~ePW~I~Svae-----------DN~LqIW~~s 404 (422)
T KOG0264|consen 346 LSRIGEEQSPEDAEDGPPELLFIHGGHTAK-----VSDFSWNPNEPWTIASVAE-----------DNILQIWQMA 404 (422)
T ss_pred ccccccccChhhhccCCcceeEEecCcccc-----cccccCCCCCCeEEEEecC-----------CceEEEeecc
Confidence 84 543 4566788877 9999999987554 45443 8999999854
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-19 Score=194.18 Aligned_cols=232 Identities=12% Similarity=0.139 Sum_probs=186.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCC-eEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE---E
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV---L 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g-~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~---L 270 (485)
.|.|+ |+|..|.+++.|+-||+|+..+- +.-.++ ++..|.+++---+ .++++ +.++||.+..+..|+. |
T Consensus 18 ~i~~d-~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~-~f~~~---s~~~tv~~y~fps~~~~~iL 92 (933)
T KOG1274|consen 18 LICYD-PDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN-HFLTG---SEQNTVLRYKFPSGEEDTIL 92 (933)
T ss_pred EEEEc-CCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc-ceEEe---eccceEEEeeCCCCCcccee
Confidence 68997 79999999999999999996554 222233 4567777776544 55544 3458999998887764 5
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
..|+ -.+..++|+ -+|..+++||+|-.|||-++.++....++++|...|.++.|.|.+.+||+++ ||+|++||++
T Consensus 93 ~Rft---lp~r~~~v~-g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 93 ARFT---LPIRDLAVS-GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeee---ccceEEEEe-cCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcc
Confidence 5555 467888987 5677888899999999999999999999999999999999999999999999 9999999996
Q ss_pred -CcEEEEeecCCCC---CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 350 -GELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 350 -G~ll~tl~gH~~~---~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
|.+..+|.+-..- ...-.+.-++|+|+|-.++-.+- |++|++++..+.+.+.+|+....
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-----------d~~Vkvy~r~~we~~f~Lr~~~~------ 231 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-----------DNTVKVYSRKGWELQFKLRDKLS------ 231 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc-----------CCeEEEEccCCceeheeeccccc------
Confidence 9999888763321 00122467899999655555554 79999999999999999988542
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+ .+..++|||.|++||++.-||.|-|||
T Consensus 232 -------------------ss-----------~~~~~~wsPnG~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 232 -------------------SS-----------KFSDLQWSPNGKYIAASTLDGQILVWN 260 (933)
T ss_pred -------------------cc-----------ceEEEEEcCCCcEEeeeccCCcEEEEe
Confidence 01 578899999999999999999999998
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=174.84 Aligned_cols=235 Identities=11% Similarity=0.067 Sum_probs=175.9
Q ss_pred cCEEEEEeCCCeEEeeecccC---cEEEEeecCCcccEEEEEEee--CCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 105 RDIVFALAQSGVCAAFCRETN---QRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG---~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
|..||+.|.|++||+|....+ ++|.+|.| |.++|+-|+|-- .|..|||+| .| +.+-||.-..|+
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~G-h~GPVwqv~wahPk~G~iLAScs----YD------gkVIiWke~~g~ 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTG-HSGPVWKVAWAHPKFGTILASCS----YD------GKVIIWKEENGR 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecC-CCCCeeEEeecccccCcEeeEee----cC------ceEEEEecCCCc
Confidence 899999999999999997653 57889998 999999999944 799999988 45 689999977776
Q ss_pred cCcccceeee-ccccCceEEEEeCCC--CeEEEEeeCCCcEEEeecCCC--eEEEEE---cCCcEEEEEEcCC---ceEE
Q 011452 180 PDAGFALFES-ESLKWPGFVEFDDVN--GKVLTYSAQDSIYKVFDLKNY--TMLYSI---SDKNVQEIKISPG---IMLL 248 (485)
Q Consensus 180 ~~~~~~lf~~-~~~~~~~~V~Fs~pn--G~~Las~s~D~tiKlWdl~~g--~~l~tl---~~~~V~~VafSpg---~~ll 248 (485)
..+ +.+. .|...+.+|+|- |+ |-+||++|.||+|.|.+.++- .....+ |.-.|++|.+.|. +-+.
T Consensus 92 w~k---~~e~~~h~~SVNsV~wa-pheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~ 167 (299)
T KOG1332|consen 92 WTK---AYEHAAHSASVNSVAWA-PHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV 167 (299)
T ss_pred hhh---hhhhhhhcccceeeccc-ccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence 532 2222 244556789996 44 789999999999999998743 222222 3447889998885 2221
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEecccCCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRTEFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~v~av 326 (485)
-. +.. ..-.+|++++.|.+||||+..+++ +-++|++|.++|+.|
T Consensus 168 ~~---------------------------~~~-------~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDV 213 (299)
T KOG1332|consen 168 DQ---------------------------GPA-------AKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDV 213 (299)
T ss_pred cc---------------------------Ccc-------cccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhh
Confidence 00 000 002578889999999999999874 445699999999999
Q ss_pred EEcCCC----cEEEEEe-CCcEEEEeCCC--c-EE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 327 IFLYEN----QLFLTFR-NRTVAVWNFRG--E-LV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 327 aFspdg----~llaS~s-D~TIklWd~~G--~-ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
|+.|.- ..+||+| ||+|-||..+. + -. +.|+.-. +.++.+.||+.|.+|+-++. |
T Consensus 214 AwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~-----~~~w~vSWS~sGn~LaVs~G-----------d 277 (299)
T KOG1332|consen 214 AWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFP-----DVVWRVSWSLSGNILAVSGG-----------D 277 (299)
T ss_pred hhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCC-----cceEEEEEeccccEEEEecC-----------C
Confidence 999865 5699999 99999998742 2 11 1222211 33899999999999998876 7
Q ss_pred CeEEEEe
Q 011452 398 GSINISN 404 (485)
Q Consensus 398 gtIklWd 404 (485)
+.|.||-
T Consensus 278 Nkvtlwk 284 (299)
T KOG1332|consen 278 NKVTLWK 284 (299)
T ss_pred cEEEEEE
Confidence 9999995
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=197.43 Aligned_cols=228 Identities=12% Similarity=0.216 Sum_probs=180.4
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCC---CeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~---g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
|.+..-+.++||+++..|.|-+|||.- .++++.+. ...|..+.|++ --.+++++ +.|++||+||+..-+-..
T Consensus 93 VkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSG--SQDg~vK~~DlR~~~S~~ 170 (839)
T KOG0269|consen 93 VKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISG--SQDGTVKCWDLRSKKSKS 170 (839)
T ss_pred cccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEec--CCCceEEEEeeecccccc
Confidence 444434568999999999999999975 34555664 45799999995 44455554 456999999999988889
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
++.+....++.|.|++-.+.+++++.+.|++++||++. .+|...+..|.+.|.++-++|++.+||||+ |++|||||.+
T Consensus 171 t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 171 TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMT 250 (839)
T ss_pred cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEecc
Confidence 99988888999999977788888899999999999995 467777899999999999999999999999 9999999996
Q ss_pred -Cc--EEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCCc
Q 011452 350 -GE--LVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAEN 424 (485)
Q Consensus 350 -G~--ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~~ 424 (485)
++ .+.+.+ +.. .|..|.|=|+-+ .||+++. ..|-.|+||||.--- .-+++..|++
T Consensus 251 ~~~~~~~~tIn--Tia----pv~rVkWRP~~~~hLAtcsm---------v~dtsV~VWDvrRPYIP~~t~~eH~~----- 310 (839)
T KOG0269|consen 251 DSRAKPKHTIN--TIA----PVGRVKWRPARSYHLATCSM---------VVDTSVHVWDVRRPYIPYATFLEHTD----- 310 (839)
T ss_pred CCCccceeEEe--ecc----eeeeeeeccCccchhhhhhc---------cccceEEEEeeccccccceeeeccCc-----
Confidence 44 333443 222 278899999765 4666665 357899999986321 3467777773
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC-CCCEEEEecCCCcE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE-DRNEIYTGNRHGLV 480 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp-Dg~~LaSgs~DgtV 480 (485)
.|+.++|.. |...|-|+|.|++|
T Consensus 311 ---------------------------------~vt~i~W~~~d~~~l~s~sKD~tv 334 (839)
T KOG0269|consen 311 ---------------------------------SVTGIAWDSGDRINLWSCSKDGTV 334 (839)
T ss_pred ---------------------------------cccceeccCCCceeeEeecCccHH
Confidence 677788876 67789999999987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-19 Score=182.71 Aligned_cols=257 Identities=13% Similarity=0.198 Sum_probs=192.7
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEE--EEEcCCcEEEEEEcCC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTML--YSISDKNVQEIKISPG 244 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l--~tl~~~~V~~VafSpg 244 (485)
+++.+||+++|... --|.....--..+..- .++++|+++. .-.-+-+|.+...... +-.....|.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~---~~ykg~~~a~~~sl~~--l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSL---LQYKGSYLAQAASLTA--LNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCcee---EEecCcccccchhhhh--hchhheeeecccCccccccccCchhhhhhhcccccceeeeecCCC
Confidence 66889999999761 1122110000011111 3456777664 3457889987644322 2333568999999997
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---------CCeeEEe
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---------NFELTEV 315 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---------tg~~~~~ 315 (485)
|.++.++... +.|.||.+.+|++|..+..|-..+..+.|+ .|+..++++|.|+-|.+|++- +-+.+..
T Consensus 93 G~~l~ag~i~--g~lYlWelssG~LL~v~~aHYQ~ITcL~fs-~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~ 169 (476)
T KOG0646|consen 93 GYFLLAGTIS--GNLYLWELSSGILLNVLSAHYQSITCLKFS-DDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI 169 (476)
T ss_pred ceEEEeeccc--CcEEEEEeccccHHHHHHhhccceeEEEEe-CCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence 7777664333 689999999999999999999999999997 678899999999999999764 2357888
Q ss_pred cccCCCceEEEEEcCC--CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 316 l~gh~~~v~avaFspd--g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
+.+|+..|..+-..+. .-+|+|+| |+|||+||+. |.++.++.--. .+.++++.|-+..+..|+.
T Consensus 170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~------ 237 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTE------ 237 (476)
T ss_pred eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCC------
Confidence 9999999999987665 45688999 9999999996 99998876432 2789999999999988876
Q ss_pred CCcCCCCeEEEEeCCC----------------CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 392 LAEGNAGSINISNILT----------------GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 392 ~~~~~DgtIklWdl~T----------------Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+|.|-+-++.+ +..+..+.||.+ .
T Consensus 238 -----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-------------------------~---------- 277 (476)
T KOG0646|consen 238 -----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-------------------------E---------- 277 (476)
T ss_pred -----cceEEeeehhcCCcccccccccccccccceeeeeccccC-------------------------C----------
Confidence 68877666532 234455566653 1
Q ss_pred cCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 456 LEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|++|+++-||..|+||+.||+|.|||.
T Consensus 278 -~~ITcLais~DgtlLlSGd~dg~VcvWdi 306 (476)
T KOG0646|consen 278 -SAITCLAISTDGTLLLSGDEDGKVCVWDI 306 (476)
T ss_pred -cceeEEEEecCccEEEeeCCCCCEEEEec
Confidence 28999999999999999999999999984
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-18 Score=174.20 Aligned_cols=234 Identities=13% Similarity=0.167 Sum_probs=187.6
Q ss_pred ccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC--EEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND--SLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~--~Las~S~d~~~d~stL~~~t~ 170 (485)
-|..+|.+++.++-++||||.|-||++||.++.+.+..|-- |.+.|.++-|.|+-. -|++++ +| +.+
T Consensus 41 aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll~-HagsitaL~F~~~~S~shLlS~s----dD------G~i 109 (362)
T KOG0294|consen 41 AHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILLS-HAGSITALKFYPPLSKSHLLSGS----DD------GHI 109 (362)
T ss_pred ccccceeEEEecceeEeccCCCCcEEEEeccchhhhcceec-cccceEEEEecCCcchhheeeec----CC------CcE
Confidence 47889999999999999999999999999999999998876 888999999999874 577766 55 688
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLL 248 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll 248 (485)
-+|+. |.... ...+. .|.+.+.+++.. |.|++-.|-+.|+++++|||-+|+--+.+. .+.-..|.|+| |..++
T Consensus 110 ~iw~~--~~W~~-~~slK-~H~~~Vt~lsiH-PS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 110 IIWRV--GSWEL-LKSLK-AHKGQVTDLSIH-PSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred EEEEc--CCeEE-eeeec-ccccccceeEec-CCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 89985 33210 11122 244557789996 899999999999999999999998655553 33334499998 44465
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
+..+ .-|-+|-+++-.+...+.- ..++-.+-|. ++++|++|++|++|++||-.+..+...+.+|..+|-++.+
T Consensus 185 v~~~----~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l--~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~ 257 (362)
T KOG0294|consen 185 VSGR----NKIDIYQLDNASVFREIEN-PKRILCATFL--DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIAS 257 (362)
T ss_pred EEec----cEEEEEecccHhHhhhhhc-cccceeeeec--CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEE
Confidence 5533 4789999988777666652 1335566663 4789999999999999999999999999999999999985
Q ss_pred --cCCCcEEEEEe-CCcEEEEeCC
Q 011452 329 --LYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 329 --spdg~llaS~s-D~TIklWd~~ 349 (485)
.|++.+|+|+| ||.|++||++
T Consensus 258 ~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 258 YTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred EecCCceEEEEeccCceEEEEEcc
Confidence 58899999999 9999999996
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.1e-17 Score=166.89 Aligned_cols=263 Identities=11% Similarity=0.143 Sum_probs=175.8
Q ss_pred eEEEEeEecc-CCcCcccceeeeccccCceEEEEeCCCCeEEEEe-eCCCcEEEeecC-CCeE--EEEEc-CCcEEEEEE
Q 011452 168 RSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVFDLK-NYTM--LYSIS-DKNVQEIKI 241 (485)
Q Consensus 168 ~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~-s~D~tiKlWdl~-~g~~--l~tl~-~~~V~~Vaf 241 (485)
+++.+|++.+ |++.. ...+. ....+..++|+ |||++|..+ ..++.|.+|++. +|++ +.++. ......|+|
T Consensus 12 ~~I~~~~~~~~g~l~~-~~~~~--~~~~~~~l~~s-pd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~ 87 (330)
T PRK11028 12 QQIHVWNLNHEGALTL-LQVVD--VPGQVQPMVIS-PDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHIST 87 (330)
T ss_pred CCEEEEEECCCCceee-eeEEe--cCCCCccEEEC-CCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEE
Confidence 5888888853 55421 11222 23456689998 799987554 458999999996 4553 33333 345678999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecC-CCe---EEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEE-
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIE-DGT---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FELTE- 314 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~-tG~---~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t-g~~~~- 314 (485)
+|++..+..+.. .++.|.+|+++ +|. .+..+.++ .+...++|. |++..++++. .+++|.+||+.+ +.+..
T Consensus 88 ~~~g~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~-p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~ 164 (330)
T PRK11028 88 DHQGRFLFSASY-NANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANID-PDNRTLWVPCLKEDRIRLFTLSDDGHLVAQ 164 (330)
T ss_pred CCCCCEEEEEEc-CCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeC-CCCCEEEEeeCCCCEEEEEEECCCCccccc
Confidence 987765555443 35899999996 343 34444432 234567775 6788887765 789999999987 43321
Q ss_pred -----ecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC---Cc--EEEEeecCCC--CCCCCCeeEEEECCCCCEE
Q 011452 315 -----VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GE--LVTSFEDHLL--WHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 315 -----~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~---G~--ll~tl~gH~~--~~~~~~v~svafSpDG~~L 380 (485)
... ....+..++|+|||++|.++. +++|.+|+++ |+ ++.++..+.. ..+. ....+.|+|||++|
T Consensus 165 ~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~i~~~pdg~~l 242 (330)
T PRK11028 165 EPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTR-WAADIHITPDGRHL 242 (330)
T ss_pred CCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCc-cceeEEECCCCCEE
Confidence 111 124578899999999987776 8999999995 33 3555543211 0011 13469999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
..+.. .+++|.+|++.+.....++.+|... . ...+
T Consensus 243 yv~~~----------~~~~I~v~~i~~~~~~~~~~~~~~~-------------------------~----------~~p~ 277 (330)
T PRK11028 243 YACDR----------TASLISVFSVSEDGSVLSFEGHQPT-------------------------E----------TQPR 277 (330)
T ss_pred EEecC----------CCCeEEEEEEeCCCCeEEEeEEEec-------------------------c----------ccCC
Confidence 99865 2689999999654333355555310 0 1345
Q ss_pred EEEEcCCCCEEEEecC-CCcEEEcc
Q 011452 461 ALFYDEDRNEIYTGNR-HGLVHVWS 484 (485)
Q Consensus 461 sl~fspDg~~LaSgs~-DgtVklWd 484 (485)
.++|+|||++|++++. +++|.+|+
T Consensus 278 ~~~~~~dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 278 GFNIDHSGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred ceEECCCCCEEEEEEccCCcEEEEE
Confidence 6899999999998886 99999996
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=180.87 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=164.9
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecccc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~ 193 (485)
+..+.+||.+ |....++.. +...+.++.|||||+.||.+|.+. .+ .++.+|++.+|+.. .+.. ...
T Consensus 183 ~~~i~i~d~d-g~~~~~lt~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~i~i~dl~tg~~~----~l~~-~~g 248 (429)
T PRK01742 183 PYEVRVADYD-GFNQFIVNR-SSQPLMSPAWSPDGSKLAYVSFEN-KK------SQLVVHDLRSGARK----VVAS-FRG 248 (429)
T ss_pred eEEEEEECCC-CCCceEecc-CCCccccceEcCCCCEEEEEEecC-CC------cEEEEEeCCCCceE----EEec-CCC
Confidence 5799999987 655666766 666899999999999999988533 23 57899999888641 1222 112
Q ss_pred CceEEEEeCCCCeEEEEee-CCCcEEEe--ecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-C
Q 011452 194 WPGFVEFDDVNGKVLTYSA-QDSIYKVF--DLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-G 267 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s-~D~tiKlW--dl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G 267 (485)
+...++|+ |||+.|++++ .|+.++|| |+.++++ ..+. ...+.+++|||++..+++.+. .++..+||++.. |
T Consensus 249 ~~~~~~wS-PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~-~~g~~~I~~~~~~~ 325 (429)
T PRK01742 249 HNGAPAFS-PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD-RSGSPQVYRMSASG 325 (429)
T ss_pred ccCceeEC-CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC-CCCCceEEEEECCC
Confidence 34478998 7999888865 68877766 6666654 3343 345788999997765444332 346678886542 2
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
.....+ ++.. ..++|+ |++.+|++.+.++.++ ||+.++++.....++ ...++.|+|||++|+.++ ++.+++|
T Consensus 326 ~~~~~l-~~~~--~~~~~S-pDG~~ia~~~~~~i~~-~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 326 GGASLV-GGRG--YSAQIS-ADGKTLVMINGDNVVK-QDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred CCeEEe-cCCC--CCccCC-CCCCEEEEEcCCCEEE-EECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 222333 3322 346675 7888888877766554 999999876544333 345678999999999999 9988888
Q ss_pred eC---CCcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 347 NF---RGELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 347 d~---~G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.+ +|++++.|.+|... ++.++|||-
T Consensus 399 ~~~~~~G~~~~~l~~~~g~-----~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDGQ-----VKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCCC-----CCCcccCCC
Confidence 75 59999999988765 788899884
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-17 Score=169.80 Aligned_cols=314 Identities=13% Similarity=0.125 Sum_probs=234.4
Q ss_pred ccceEEEEEe----cCEEEEE--eCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 95 RSKIIEIVAA----RDIVFAL--AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 95 ~s~V~~i~~s----~~~ias~--s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
...|..|+|| |..|.+. +.+..+.+||-+.+..+....- .+++|--..|.|-+..|+.. .| . .
T Consensus 154 ~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~-sne~v~~a~FHPtd~nliit--~G--k------~ 222 (626)
T KOG2106|consen 154 DRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKT-SNEVVFLATFHPTDPNLIIT--CG--K------G 222 (626)
T ss_pred cccceeeeecccCCCceEEEecCCCccccchhhchhhhccCccee-ccceEEEEEeccCCCcEEEE--eC--C------c
Confidence 4568889998 6666554 4567888999888887776654 56789999999987766552 22 2 3
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCce
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIM 246 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ 246 (485)
.+-+|+.+.|-+...+.+|+....+++-+|.|. +||++++ |..+|+|-||+..+.+..+.. |+..|.++..--+|+
T Consensus 223 H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~-engdviT-gDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gt 300 (626)
T KOG2106|consen 223 HLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFL-ENGDVIT-GDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGT 300 (626)
T ss_pred eEEEEEccCCceEEEeeccccccceEEEEEEEc-CCCCEEe-ecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCcc
Confidence 677899888888777788987444888899997 7999865 667999999998877766555 456899999888999
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEE-----------------------------------------EeecCCcceeEEEE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLK-----------------------------------------SFNHLLHRNKKVDF 285 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~-----------------------------------------tl~~~~~~~~~V~f 285 (485)
|++. ..|..|-+||- +=+.++ +-.+|....+.++-
T Consensus 301 llSG---gKDRki~~Wd~-~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~ 376 (626)
T KOG2106|consen 301 LLSG---GKDRKIILWDD-NYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT 376 (626)
T ss_pred Eeec---CccceEEeccc-cccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc
Confidence 9873 46689999982 211111 11255666677776
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCC
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWH 363 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~ 363 (485)
. |+.+++++++.|++++||+ . .++ +..+--.+.+.++.|.|-| .+|-|. -|---+-|.+ -.+++.=.+ ...
T Consensus 377 h-ps~~q~~T~gqdk~v~lW~-~-~k~-~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~- 449 (626)
T KOG2106|consen 377 H-PSKNQLLTCGQDKHVRLWN-D-HKL-EWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQ- 449 (626)
T ss_pred C-CChhheeeccCcceEEEcc-C-Cce-eEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCc-
Confidence 5 6678899999999999999 2 222 2222234578899999999 888888 8877788887 445444333 333
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
++.|.|+|||.+||-||. |+.|.|+-+.. |..+....-|..
T Consensus 450 ----ls~v~ysp~G~~lAvgs~-----------d~~iyiy~Vs~~g~~y~r~~k~~g----------------------- 491 (626)
T KOG2106|consen 450 ----LSVVRYSPDGAFLAVGSH-----------DNHIYIYRVSANGRKYSRVGKCSG----------------------- 491 (626)
T ss_pred ----eEEEEEcCCCCEEEEecC-----------CCeEEEEEECCCCcEEEEeeeecC-----------------------
Confidence 899999999999999998 79999999865 444444444431
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|+.|.||+|+++|.|-|-|-.|-.|.
T Consensus 492 --------------s~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 492 --------------SPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred --------------ceeEEeeecCCCceEEeccCceEEEEEc
Confidence 2899999999999999999999998883
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-17 Score=176.82 Aligned_cols=220 Identities=14% Similarity=0.133 Sum_probs=151.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeE--EEEEcCCcEEEEEEc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTM--LYSISDKNVQEIKIS 242 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~--l~tl~~~~V~~VafS 242 (485)
..+.|||. +|.-. +.+.. +...+.++.|+ |||+.||+.+.+ .+|.+||+.+|+. +..+.+ ....++||
T Consensus 184 ~~i~i~d~-dg~~~--~~lt~--~~~~v~~p~wS-PDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g-~~~~~~wS 256 (429)
T PRK01742 184 YEVRVADY-DGFNQ--FIVNR--SSQPLMSPAWS-PDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG-HNGAPAFS 256 (429)
T ss_pred EEEEEECC-CCCCc--eEecc--CCCccccceEc-CCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC-ccCceeEC
Confidence 68889995 45421 12222 22345688998 799999998754 4799999998863 433433 34579999
Q ss_pred CCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEEecccC
Q 011452 243 PGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FELTEVSRTE 319 (485)
Q Consensus 243 pg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t-g~~~~~l~gh 319 (485)
|++. ++.+.+.++...|.+||+.+|++ ..+..+...+..++|+ |++.+|+..+ .+++.+||++.. +...+.+ ++
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wS-pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~ 333 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWS-PDGQSILFTSDRSGSPQVYRMSASGGGASLV-GG 333 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEe-cC
Confidence 9765 44443333323455668877764 5566665667789997 7888888765 688999998753 2222333 44
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
.. ....|+|||+.|+..+ ++.+ +||+. |+.......+. ..++.|+|||++|+.++. +
T Consensus 334 ~~--~~~~~SpDG~~ia~~~~~~i~-~~Dl~~g~~~~lt~~~~-------~~~~~~sPdG~~i~~~s~-----------~ 392 (429)
T PRK01742 334 RG--YSAQISADGKTLVMINGDNVV-KQDLTSGSTEVLSSTFL-------DESPSISPNGIMIIYSST-----------Q 392 (429)
T ss_pred CC--CCccCCCCCCEEEEEcCCCEE-EEECCCCCeEEecCCCC-------CCCceECCCCCEEEEEEc-----------C
Confidence 43 4567999999999888 7655 59996 76543323321 356889999999999986 5
Q ss_pred CeEEEEeC--CCCeEEEEecCCC
Q 011452 398 GSINISNI--LTGKCLAKIRASN 418 (485)
Q Consensus 398 gtIklWdl--~TGk~l~tl~gH~ 418 (485)
+.+++|++ .+|+++++|.+|.
T Consensus 393 g~~~~l~~~~~~G~~~~~l~~~~ 415 (429)
T PRK01742 393 GLGKVLQLVSADGRFKARLPGSD 415 (429)
T ss_pred CCceEEEEEECCCCceEEccCCC
Confidence 77787775 4699999999886
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=185.85 Aligned_cols=296 Identities=14% Similarity=0.111 Sum_probs=194.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcE------EEEeecCCcccEEEEEEeeCCCE-EEEEEeecCCCCcccceeEEEEeEecc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQR------ICFLNVTADEVIRSLFYNKNNDS-LITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~------l~tl~g~~~~~i~sv~~spdg~~-Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
..+||.+.+||-|.|+|..+-+. +.... .|.++|..|.+=| |+. |+++| .| +|+++||+..
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~-aH~nAifDl~wap-ge~~lVsas----GD------sT~r~Wdvk~ 131 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPL-AHKNAIFDLKWAP-GESLLVSAS----GD------STIRPWDVKT 131 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccc-cccceeEeeccCC-CceeEEEcc----CC------ceeeeeeecc
Confidence 58999999999999999764321 34443 4999999999999 665 55544 35 7999999999
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-EEEEEcCCcE----EEEEEcCCceEEEEE
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-MLYSISDKNV----QEIKISPGIMLLIFT 251 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-~l~tl~~~~V----~~VafSpg~~ll~ss 251 (485)
++++.+...++ |.+.+.+++|.+-|--++++|+.|+.|+|||+.- +. .+..+ ...+ ..-. .|..-+.
T Consensus 132 s~l~G~~~~~G--H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~-~~~~~~~~n~~p-tpskp~~--- 204 (720)
T KOG0321|consen 132 SRLVGGRLNLG--HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEF-DNRIYGRHNTAP-TPSKPLK--- 204 (720)
T ss_pred ceeecceeecc--cccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHH-hhhhhccccCCC-CCCchhh---
Confidence 99876554444 4566678999877888999999999999999752 21 11000 0000 0000 1111110
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeE------Eec--ccC---
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNFELT------EVS--RTE--- 319 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~tIkIWDv~tg~~~------~~l--~gh--- 319 (485)
.-++=|-...+ ++. ..|..|.| +|+..|+++|. |++||+||++...+. ... ..|
T Consensus 205 -----kr~~k~kA~s~----ti~---ssvTvv~f--kDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skr 270 (720)
T KOG0321|consen 205 -----KRIRKWKAASN----TIF---SSVTVVLF--KDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKR 270 (720)
T ss_pred -----ccccccccccC----cee---eeeEEEEE--eccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccc
Confidence 11111211111 111 23455666 67888888875 999999999976542 221 223
Q ss_pred CCceEEEEEcCCC-cEEEEEeCCcEEEEeCCCc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYEN-QLFLTFRNRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg-~llaS~sD~TIklWd~~G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
...+.+++.-.-| .++|++.|++|-.||+.+. .+..+.||... ..-..-..|||+++|+||+.
T Consensus 271 s~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~---sf~vks~lSpd~~~l~SgSs---------- 337 (720)
T KOG0321|consen 271 SVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS---SFYVKSELSPDDCSLLSGSS---------- 337 (720)
T ss_pred eeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc---eeeeeeecCCCCceEeccCC----------
Confidence 2234445443333 5556666999999999533 56677777642 11223446999999999987
Q ss_pred CCCeEEEEeCCCCe-EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEE
Q 011452 396 NAGSINISNILTGK-CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYT 473 (485)
Q Consensus 396 ~DgtIklWdl~TGk-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaS 473 (485)
|.-..+|.+.+-+ -+..+.||+ ..|++|.+.|--- -+||
T Consensus 338 -d~~ayiw~vs~~e~~~~~l~Ght--------------------------------------~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 338 -DEQAYIWVVSSPEAPPALLLGHT--------------------------------------REVTTVRWLPSATTPVAT 378 (720)
T ss_pred -CcceeeeeecCccCChhhhhCcc--------------------------------------eEEEEEeeccccCCCcee
Confidence 7899999998754 456677886 2799999977432 3666
Q ss_pred ecCCCcEEEccC
Q 011452 474 GNRHGLVHVWSN 485 (485)
Q Consensus 474 gs~DgtVklWd~ 485 (485)
+|+|-+|+||++
T Consensus 379 cSdD~~~kiW~l 390 (720)
T KOG0321|consen 379 CSDDFRVKIWRL 390 (720)
T ss_pred eccCcceEEEec
Confidence 799999999985
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=167.08 Aligned_cols=258 Identities=13% Similarity=0.127 Sum_probs=180.6
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-cceeeeccccCceEEEEeCCC-CeE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-FALFESESLKWPGFVEFDDVN-GKV 207 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~pn-G~~ 207 (485)
++..+|.+.|.+|.|++-|+.+|++|.| ++++|||...+.-+-. ..-|. .|-+.++.|.+-+|. ||+
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsD----------q~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqv 75 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSD----------QTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQV 75 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCC----------CcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccce
Confidence 5556689999999999999999998853 5999999743332100 00122 234556677775554 999
Q ss_pred EEEeeCCCcEEEeecC--C----Ce---EEEEEcC--CcEEEEEEcC---CceEEEEEcCCCCeeEEEEecCCCeEEE--
Q 011452 208 LTYSAQDSIYKVFDLK--N----YT---MLYSISD--KNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLK-- 271 (485)
Q Consensus 208 Las~s~D~tiKlWdl~--~----g~---~l~tl~~--~~V~~VafSp---g~~ll~sss~~~D~tIklWdi~tG~~L~-- 271 (485)
+|++|.|+|++||.-. + |. ...++.+ ..|.+|.|.| |-++++. +.|++|||++..+--.|.
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~---~aDG~lRIYEA~dp~nLs~W 152 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA---SADGILRIYEAPDPMNLSQW 152 (361)
T ss_pred EEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe---ccCcEEEEEecCCccccccc
Confidence 9999999999999742 1 11 2455554 4799999998 5555544 345899999765432222
Q ss_pred ----Eee-------cCCcceeEEEEEe--cCCCEEEEEeCC-----CcEEEEECC-CC-ee--EEecccCCCceEEEEEc
Q 011452 272 ----SFN-------HLLHRNKKVDFIE--QFNEKLLVKQEN-----ENLQILDVR-NF-EL--TEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 272 ----tl~-------~~~~~~~~V~f~~--~~~~~lls~s~D-----~tIkIWDv~-tg-~~--~~~l~gh~~~v~avaFs 329 (485)
.+. .+...-.+|.+.+ -....|++|+.+ +.++||.-. ++ ++ +..|.+|.+.|++++|.
T Consensus 153 ~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wA 232 (361)
T KOG2445|consen 153 TLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWA 232 (361)
T ss_pred hhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeec
Confidence 222 1223345777752 123456666544 589999754 33 33 45578999999999999
Q ss_pred CC----CcEEEEEe-CCcEEEEeCCC---------------------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 330 YE----NQLFLTFR-NRTVAVWNFRG---------------------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 330 pd----g~llaS~s-D~TIklWd~~G---------------------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
|. -++||+++ || |+||++.+ +++..|.+|... |+.+.|.=-|..|+|.
T Consensus 233 Pn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~-----VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 233 PNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE-----VWRVRWNMTGTILSST 306 (361)
T ss_pred cccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc-----eEEEEEeeeeeEEeec
Confidence 95 57899999 99 99999763 235568888755 9999999999999998
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCC---CCeEEEEecCCC
Q 011452 384 CKADSDDPLAEGNAGSINISNIL---TGKCLAKIRASN 418 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~---TGk~l~tl~gH~ 418 (485)
+. ||.||||... .-+|+..+++..
T Consensus 307 Gd-----------DG~VRLWkany~n~~kC~sv~~~e~ 333 (361)
T KOG2445|consen 307 GD-----------DGCVRLWKANYNNLWKCTSVLKAEG 333 (361)
T ss_pred CC-----------CceeeehhhhhhhhheeeeEEeccC
Confidence 75 8999999632 256888887654
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.4e-18 Score=170.42 Aligned_cols=277 Identities=10% Similarity=0.106 Sum_probs=208.1
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc---ccceeeec-cccCce-----------EEE
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA---GFALFESE-SLKWPG-----------FVE 199 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~---~~~lf~~~-~~~~~~-----------~V~ 199 (485)
+.+...+.-|||||..|.+-|. | ...++|.++.--..+ +...|... ....+. -..
T Consensus 48 p~nf~kgckWSPDGSciL~~se----d------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSE----D------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred chhhhccceeCCCCceEEeecc----c------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccc
Confidence 4445667789999999988664 3 367777764322211 11123221 111111 122
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----C---cEEEEEEcCCceEEEEEcCCCCeeEEEEec-CCCeEE-
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K---NVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTVL- 270 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~---~V~~VafSpg~~ll~sss~~~D~tIklWdi-~tG~~L- 270 (485)
-+.|+-.+.|+++.|.-|++||.-+|++..+++. + .-.+++|||+|..+.++ .-.+||++|+ ..|.--
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG---ykrcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG---YKRCIRVFDTSRPGRDCP 194 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec---ccceEEEeeccCCCCCCc
Confidence 3458889999999999999999999998877763 2 34579999977776653 2379999999 566532
Q ss_pred --EEee----cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc
Q 011452 271 --KSFN----HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT 342 (485)
Q Consensus 271 --~tl~----~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T 342 (485)
.|+. +..+-+..++|+|-+...+++++...++-|+.-..++++.++.||.+.|+-+.|-+||+.|.||+ |-.
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dk 274 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDK 274 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCe
Confidence 1222 22345668999876666788899999999999999999999999999999999999999999998 999
Q ss_pred EEEEeCC--CcEEEEeecCCCCCCCCCeeEEEE--CCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCC
Q 011452 343 VAVWNFR--GELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRAS 417 (485)
Q Consensus 343 IklWd~~--G~ll~tl~gH~~~~~~~~v~svaf--SpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH 417 (485)
|-.||++ ++.|..|+.|..-. + .-|.| -|+|++||||+. ||.|++||+++ |..+..+..|
T Consensus 275 Il~WDiR~~~~pv~~L~rhv~~T-N---QRI~FDld~~~~~LasG~t-----------dG~V~vwdlk~~gn~~sv~~~~ 339 (406)
T KOG2919|consen 275 ILCWDIRYSRDPVYALERHVGDT-N---QRILFDLDPKGEILASGDT-----------DGSVRVWDLKDLGNEVSVTGNY 339 (406)
T ss_pred EEEEeehhccchhhhhhhhccCc-c---ceEEEecCCCCceeeccCC-----------CccEEEEecCCCCCcccccccc
Confidence 9999995 89999999997631 1 23555 689999999976 79999999998 8877777777
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
++ -|.+|+++|-=.++||+|-.
T Consensus 340 sd--------------------------------------~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 340 SD--------------------------------------TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cc--------------------------------------cccceecCcccceeeeccCc
Confidence 63 78889999999999988743
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=194.65 Aligned_cols=193 Identities=12% Similarity=0.182 Sum_probs=160.6
Q ss_pred EEEEEc--CCceEEEEEcCCCCeeEEEEecCC---CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 237 QEIKIS--PGIMLLIFTKASGHVPLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 237 ~~VafS--pg~~ll~sss~~~D~tIklWdi~t---G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
++|+++ ..+.||+++. . +.|-+||+.- -+.|..|+.|...+.+++|++-....|++||.|++||+||++...
T Consensus 91 ~DVkW~~~~~NlIAT~s~-n--G~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~ 167 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCST-N--GVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK 167 (839)
T ss_pred hhcccccchhhhheeecC-C--CcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence 345555 3555555533 3 7899999976 667789999999999999987777888999999999999999999
Q ss_pred eEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 312 LTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
-..++.+....|..|.|+| ++..|+++. .|++++||++ .++...|..|.+. |..+-++|++.+||+|+.
T Consensus 168 S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp-----V~c~nwhPnr~~lATGGR-- 240 (839)
T KOG0269|consen 168 SKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP-----VLCLNWHPNREWLATGGR-- 240 (839)
T ss_pred ccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc-----eEEEeecCCCceeeecCC--
Confidence 9999999999999999998 678899999 9999999995 7788999999988 999999999999999986
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
|++|||||..+++.-..+.-|+. ..|..|.|-|+
T Consensus 241 ---------DK~vkiWd~t~~~~~~~~tInTi-------------------------------------apv~rVkWRP~ 274 (839)
T KOG0269|consen 241 ---------DKMVKIWDMTDSRAKPKHTINTI-------------------------------------APVGRVKWRPA 274 (839)
T ss_pred ---------CccEEEEeccCCCccceeEEeec-------------------------------------ceeeeeeeccC
Confidence 89999999876553322222331 28899999999
Q ss_pred CCE-EEEec--CCCcEEEccC
Q 011452 468 RNE-IYTGN--RHGLVHVWSN 485 (485)
Q Consensus 468 g~~-LaSgs--~DgtVklWd~ 485 (485)
.+. |||.| .|-.|+|||+
T Consensus 275 ~~~hLAtcsmv~dtsV~VWDv 295 (839)
T KOG0269|consen 275 RSYHLATCSMVVDTSVHVWDV 295 (839)
T ss_pred ccchhhhhhccccceEEEEee
Confidence 875 88887 6889999995
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=170.76 Aligned_cols=221 Identities=16% Similarity=0.134 Sum_probs=175.2
Q ss_pred ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCC
Q 011452 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~ 255 (485)
+.|+++...+++.. |...+..++|+|-|..+|||||.|.||+||++.. +.|. . +
T Consensus 66 k~Gr~d~~~P~v~G-Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe--------------------~~l~-~---~- 119 (472)
T KOG0303|consen 66 KTGRMDASYPLVCG-HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPE--------------------NGLT-R---D- 119 (472)
T ss_pred cccccCCCCCCccC-ccccccccccCccCCceeecCCCCceEEEEECCC--------------------cccc-c---C-
Confidence 68888887888874 6777778999988999999999999999999743 2221 0 0
Q ss_pred CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
- + +....|.||+.+|.-|+|.+--..-|++++.|.+|.|||+.||+.+-++. |.+.|+++.|+.||.+|
T Consensus 120 -l--------t-epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l 188 (472)
T KOG0303|consen 120 -L--------T-EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLL 188 (472)
T ss_pred -c--------c-cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCcee
Confidence 0 1 56788999999999999986666788889999999999999999988886 99999999999999999
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC---CeE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT---GKC 410 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T---Gk~ 410 (485)
+|.+ |+.|+|||.+ |+.+..-.+|.+.- -.-+.|-.+|+ |+|.+.+ .-++..|-|||-.. .--
T Consensus 189 ~TtckDKkvRv~dpr~~~~v~e~~~heG~k----~~Raifl~~g~-i~tTGfs-------r~seRq~aLwdp~nl~eP~~ 256 (472)
T KOG0303|consen 189 CTTCKDKKVRVIDPRRGTVVSEGVAHEGAK----PARAIFLASGK-IFTTGFS-------RMSERQIALWDPNNLEEPIA 256 (472)
T ss_pred eeecccceeEEEcCCCCcEeeecccccCCC----cceeEEeccCc-eeeeccc-------cccccceeccCcccccCcce
Confidence 9999 9999999996 99999888888752 23567888999 5555542 34568899998543 223
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec-CCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~DgtVklWd 484 (485)
+++|-..+ .|.==+|+||-++||-++ -|+.||.+.
T Consensus 257 ~~elDtSn---------------------------------------Gvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 257 LQELDTSN---------------------------------------GVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred eEEeccCC---------------------------------------ceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 33443221 677779999999988766 699998764
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.6e-17 Score=162.64 Aligned_cols=239 Identities=10% Similarity=0.128 Sum_probs=176.3
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
.+..|.|+ |.+..|.-+|.|++++|+|+..-++...+. ++++.+.+|-|....+++ +-|+.||+.|+.+|+..+-
T Consensus 15 ~IS~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G---~~dg~vr~~Dln~~~~~~i 90 (323)
T KOG1036|consen 15 GISSVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTG---GLDGQVRRYDLNTGNEDQI 90 (323)
T ss_pred ceeeEEEc-CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEe---ccCceEEEEEecCCcceee
Confidence 45589999 566666666799999999998877766664 689999999998887765 4568999999999998876
Q ss_pred eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 349 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-- 349 (485)
.+ |...+..|.++ +-.+.+++||+|++||+||.++..+..++... ..|.+. +-.|..|+.|. |+.|-+||++
T Consensus 91 gt-h~~~i~ci~~~-~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~-kkVy~~--~v~g~~LvVg~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 91 GT-HDEGIRCIEYS-YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQG-KKVYCM--DVSGNRLVVGTSDRKVLIYDLRNL 165 (323)
T ss_pred cc-CCCceEEEEee-ccCCeEEEcccCccEEEEeccccccccccccC-ceEEEE--eccCCEEEEeecCceEEEEEcccc
Confidence 65 56788999997 55678999999999999999985555554322 255554 55566677766 9999999995
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC----eEEEEecCCCCCCCCcc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG----KCLAKIRASNGLPAENE 425 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG----k~l~tl~gH~~~~~~~~ 425 (485)
.+..+.-+-.... .+++|++-|++.=.|.+|- ||-|-+=.+.+. +--..|+.|-.
T Consensus 166 ~~~~q~reS~lky----qtR~v~~~pn~eGy~~sSi-----------eGRVavE~~d~s~~~~skkyaFkCHr~------ 224 (323)
T KOG1036|consen 166 DEPFQRRESSLKY----QTRCVALVPNGEGYVVSSI-----------EGRVAVEYFDDSEEAQSKKYAFKCHRL------ 224 (323)
T ss_pred cchhhhcccccee----EEEEEEEecCCCceEEEee-----------cceEEEEccCCchHHhhhceeEEeeec------
Confidence 4444322222111 2899999998887888776 687777655554 22345555642
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++.. ...| +|.+++|+|--+++|||+.||.|-+||.
T Consensus 225 -------------~~~~~-------~~~y---PVNai~Fhp~~~tfaTgGsDG~V~~Wd~ 261 (323)
T KOG1036|consen 225 -------------SEKDT-------EIIY---PVNAIAFHPIHGTFATGGSDGIVNIWDL 261 (323)
T ss_pred -------------ccCCc-------eEEE---EeceeEeccccceEEecCCCceEEEccC
Confidence 11111 1112 8999999999999999999999999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.3e-17 Score=167.85 Aligned_cols=281 Identities=10% Similarity=0.101 Sum_probs=213.1
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t 169 (485)
-+.|.+|.|- .++|.+++.||+++||.++ ++.+|..+.. -.-+|.+..|.|+|+ .|++++ -. +-
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~----rr------ky 281 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSG----RR------KY 281 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecc----cc------eE
Confidence 3568889998 9999999999999999876 2346777766 566899999999999 555544 23 56
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIML 247 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~l 247 (485)
...||+.++|..+-.++.+.+ .......+.+ +++++||..+..|-|-|-..+|++++.+++ ...|.+++||. +.+|
T Consensus 282 ~ysyDle~ak~~k~~~~~g~e-~~~~e~FeVS-hd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l 359 (514)
T KOG2055|consen 282 LYSYDLETAKVTKLKPPYGVE-EKSMERFEVS-HDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKEL 359 (514)
T ss_pred EEEeeccccccccccCCCCcc-cchhheeEec-CCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEE
Confidence 778999999885433344433 1233355666 799999999999999999999999999998 45799999994 6555
Q ss_pred EEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEeCCCcEEEEECCC------CeeEEecccC
Q 011452 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQENENLQILDVRN------FELTEVSRTE 319 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s~D~tIkIWDv~t------g~~~~~l~gh 319 (485)
++++ .++.|-+||+..-.|++.|..- +.+. +++. ++++.++++||+-|-|.|||..+ .+++.++..-
T Consensus 360 ~~~~---~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~-S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL 434 (514)
T KOG2055|consen 360 LASG---GTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCI-SLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL 434 (514)
T ss_pred EEEc---CCceEEEEecCCcceEEEEeec-Cccceeeeee-cCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhh
Confidence 5553 3479999999999999999842 3343 4443 36788899999999999999664 3455555555
Q ss_pred CCceEEEEEcCCCcEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 320 FMTPSAFIFLYENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
.-.|+++.|+||+|+||-+| +.++||=.+- -..-..|.... .+-+.|.+++|||.|-+||-|-.
T Consensus 435 tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGNe---------- 502 (514)
T KOG2055|consen 435 TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGNE---------- 502 (514)
T ss_pred heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--CcccceEEEEecCCCceEEeecC----------
Confidence 66899999999999999887 7899988764 33222232111 11233899999999999999986
Q ss_pred CCCeEEEEeCC
Q 011452 396 NAGSINISNIL 406 (485)
Q Consensus 396 ~DgtIklWdl~ 406 (485)
+|.+.||.+.
T Consensus 503 -~grv~l~kL~ 512 (514)
T KOG2055|consen 503 -AGRVHLFKLH 512 (514)
T ss_pred -CCceeeEeec
Confidence 7999999763
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=165.73 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=178.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCC--------CeEE----EEE---cCCcEEEEEEc-------CCceEEEEEcCC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKN--------YTML----YSI---SDKNVQEIKIS-------PGIMLLIFTKAS 254 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~--------g~~l----~tl---~~~~V~~VafS-------pg~~ll~sss~~ 254 (485)
...++ |||.-|.+-+.|.++++|++.. +-+. .++ .+..|.+-.+= |..-|.++++
T Consensus 54 gckWS-PDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss-- 130 (406)
T KOG2919|consen 54 GCKWS-PDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS-- 130 (406)
T ss_pred cceeC-CCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc--
Confidence 45676 8999999999999999999742 1111 111 24455543321 5555555433
Q ss_pred CCeeEEEEecCCCeEEEEee--cCCccee---EEEEEecCCCEEEEEeCCCcEEEEEC-CCCeeEEec-------ccCCC
Q 011452 255 GHVPLKILSIEDGTVLKSFN--HLLHRNK---KVDFIEQFNEKLLVKQENENLQILDV-RNFELTEVS-------RTEFM 321 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~--~~~~~~~---~V~f~~~~~~~lls~s~D~tIkIWDv-~tg~~~~~l-------~gh~~ 321 (485)
.|.+|+|||..||++..++. .|+..+. +++|+ |||++|.+| ...+||+.|+ +.|.-..+. .|...
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs-~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g 208 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFS-PDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG 208 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEec-CCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence 55899999999999999887 4555554 89997 778777665 8899999999 666532222 12366
Q ss_pred ceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 322 TPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 322 ~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
-+.+++|+|-. +++|.++ -+++-|++-. ++++++|-||..- |.-+.|-+||..|.||+.. |-
T Consensus 209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG-----vThL~~~edGn~lfsGaRk----------~d 273 (406)
T KOG2919|consen 209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG-----VTHLQWCEDGNKLFSGARK----------DD 273 (406)
T ss_pred eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC-----eeeEEeccCcCeecccccC----------CC
Confidence 88999999955 4899999 9999999986 8899999999976 9999999999999999984 67
Q ss_pred eEEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 399 SINISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 399 tIklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.|-.||+. .++.|..|..|.+. +| +.|. ....|+|++||||+.|
T Consensus 274 kIl~WDiR~~~~pv~~L~rhv~~----------------------TN------------QRI~-FDld~~~~~LasG~td 318 (406)
T KOG2919|consen 274 KILCWDIRYSRDPVYALERHVGD----------------------TN------------QRIL-FDLDPKGEILASGDTD 318 (406)
T ss_pred eEEEEeehhccchhhhhhhhccC----------------------cc------------ceEE-EecCCCCceeeccCCC
Confidence 89999996 46778889888631 11 1443 5678999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
|.|++||+
T Consensus 319 G~V~vwdl 326 (406)
T KOG2919|consen 319 GSVRVWDL 326 (406)
T ss_pred ccEEEEec
Confidence 99999996
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.8e-17 Score=172.20 Aligned_cols=263 Identities=17% Similarity=0.179 Sum_probs=203.5
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeeccc-Cc--EEEE---eecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRET-NQ--RICF---LNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t-G~--~l~t---l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
|.|..-|.++.++ ...+++++ -|-||+||+.. |. .+.. |+ .++.|||.-+.|||.+|++++. -
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGe----a-- 486 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGE----A-- 486 (705)
T ss_pred hccCcEEEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccc----c--
Confidence 5677889999999 78888886 57899999863 11 1222 33 4678999999999999999663 3
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccC--c--eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKW--P--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQ 237 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~--~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~ 237 (485)
-++.|||+..-.+. ...+ +.. + ..++.+ ||.++.-++-.||.|.||||.+..++..|.+ +.+.
T Consensus 487 ----stlsiWDLAapTpr-----ikae-ltssapaCyALa~s-pDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGas 555 (705)
T KOG0639|consen 487 ----STLSIWDLAAPTPR-----IKAE-LTSSAPACYALAIS-PDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGAS 555 (705)
T ss_pred ----ceeeeeeccCCCcc-----hhhh-cCCcchhhhhhhcC-CccceeeeeccCCcEEEEEcccceeeecccCCCCCce
Confidence 58889998655441 1111 111 1 247787 7999999999999999999999999999976 5799
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~ 317 (485)
+|.+|++|..+=++ .-|.|||-||+.+|..+..... ...|+++-.. |.++.+++|=+++.+-|...... ....+.
T Consensus 556 cIdis~dGtklWTG--GlDntvRcWDlregrqlqqhdF-~SQIfSLg~c-P~~dWlavGMens~vevlh~skp-~kyqlh 630 (705)
T KOG0639|consen 556 CIDISKDGTKLWTG--GLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYC-PTGDWLAVGMENSNVEVLHTSKP-EKYQLH 630 (705)
T ss_pred eEEecCCCceeecC--CCccceeehhhhhhhhhhhhhh-hhhheecccC-CCccceeeecccCcEEEEecCCc-cceeec
Confidence 99999766655553 4579999999999987754321 2567777775 67889999999999999887744 445566
Q ss_pred cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 318 TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 318 gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-|...|-++.|.|-|+.|+|.+ |+-+-.|..- |.-+....... . |.+..+|.|.+||++||.
T Consensus 631 lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~S-s-----VlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 631 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESS-S-----VLSCDISFDDKYIVTGSG 694 (705)
T ss_pred ccccEEEEEEecccCceeeecCchhhhhhccCccccceeeccccC-c-----ceeeeeccCceEEEecCC
Confidence 7889999999999999999999 9999999995 87665544322 2 899999999999999986
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=170.69 Aligned_cols=228 Identities=13% Similarity=0.150 Sum_probs=165.4
Q ss_pred CCeEEEEeeCCCcEEEeecCCCe---EEEEE--------------------cCCcEEEEEEcC-CceEEEEEcCCCCeeE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYT---MLYSI--------------------SDKNVQEIKISP-GIMLLIFTKASGHVPL 259 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~---~l~tl--------------------~~~~V~~VafSp-g~~ll~sss~~~D~tI 259 (485)
-|.++|-|..|..|-||||.=-. ...+| |...|.++++.- -.-+|+|+ +.|+||
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSg--saD~TV 268 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASG--SADKTV 268 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEec--CCCceE
Confidence 47899999999999999986322 11222 112456677773 33344444 456999
Q ss_pred EEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE-EEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL-FLTF 338 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l-laS~ 338 (485)
||||+.+|+|-.++++|...|.+++|.+.-++.||+|+.|+||+|.|.+.-.+....-.-...|..+++.|.... ++.+
T Consensus 269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~ 348 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS 348 (463)
T ss_pred EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence 999999999999999999999999999888899999999999999999942221111112346888888876654 3344
Q ss_pred e-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 339 R-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
. ||+|+-.|.+ |+++.++..|... |.+|.+++.-. +|++++. |++||||++.- ..-...
T Consensus 349 tddG~v~~~D~R~~~~~vwt~~AHd~~-----ISgl~~n~~~p~~l~t~s~-----------d~~Vklw~~~~-~~~~~v 411 (463)
T KOG0270|consen 349 TDDGTVYYFDIRNPGKPVWTLKAHDDE-----ISGLSVNIQTPGLLSTAST-----------DKVVKLWKFDV-DSPKSV 411 (463)
T ss_pred cCCceEEeeecCCCCCceeEEEeccCC-----cceEEecCCCCcceeeccc-----------cceEEEEeecC-CCCccc
Confidence 4 9999999995 9999999999987 99999988654 4555554 89999999752 221222
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~DgtVklWd~ 485 (485)
..|. . -+....+.++.|+-. +||.|+..+.+||||+
T Consensus 412 ~~~~------------------------~-----------~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 412 KEHS------------------------F-----------KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred cccc------------------------c-----------cccceeecccCCCcceEEEecCccceEEEeec
Confidence 2332 0 112456677777764 5888889999999985
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=169.39 Aligned_cols=194 Identities=14% Similarity=0.217 Sum_probs=156.0
Q ss_pred cEEEEEEcC--CceEEEEEcCCCCeeEEEEecCC----------------CeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 235 NVQEIKISP--GIMLLIFTKASGHVPLKILSIED----------------GTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 235 ~V~~VafSp--g~~ll~sss~~~D~tIklWdi~t----------------G~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
.|+-|.-++ +..++++= +.-+.|+|||+.. -++|.++++|...-+.++|++.-.+.|++|
T Consensus 153 ~~NRvr~~~~~~~~~~asw--se~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG 230 (440)
T KOG0302|consen 153 GINRVRVSRLGNEVLCASW--SENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG 230 (440)
T ss_pred ccceeeecccCCcceeeee--cccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC
Confidence 455566664 33343332 2337788888742 346788999988889999997667788888
Q ss_pred eCCCcEEEEECCCCee---EEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC-C---cEEEEeecCCCCCCCCC
Q 011452 297 QENENLQILDVRNFEL---TEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~---~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~-G---~ll~tl~gH~~~~~~~~ 367 (485)
---+.|++|...+|.- ...+.+|+..|..+.+|| +...|||+| |++|+|||++ | .++.+ +.|..-
T Consensus 231 Dc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sD----- 304 (440)
T KOG0302|consen 231 DCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSD----- 304 (440)
T ss_pred ccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCc-----
Confidence 7889999999999865 334678999999999998 566889999 9999999997 6 35655 788765
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC---CeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT---GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T---Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
||-|.|+.+--+||||+. ||+++||||.+ |+.+++++-|..
T Consensus 305 VNVISWnr~~~lLasG~D-----------dGt~~iwDLR~~~~~~pVA~fk~Hk~------------------------- 348 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGD-----------DGTLSIWDLRQFKSGQPVATFKYHKA------------------------- 348 (440)
T ss_pred eeeEEccCCcceeeecCC-----------CceEEEEEhhhccCCCcceeEEeccC-------------------------
Confidence 999999999889999986 79999999964 788999998873
Q ss_pred ccccccchhcccCCeEEEEEcCC-CCEEEEecCCCcEEEccC
Q 011452 445 ASRIRSTVAEALEDITALFYDED-RNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspD-g~~LaSgs~DgtVklWd~ 485 (485)
.|++|.|+|. ...|+.++.|.+|-|||+
T Consensus 349 -------------pItsieW~p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 349 -------------PITSIEWHPHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred -------------CeeEEEeccccCceEEeccCCCcEEEEEe
Confidence 9999999985 467888889999999995
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.2e-17 Score=162.15 Aligned_cols=288 Identities=14% Similarity=0.180 Sum_probs=194.4
Q ss_pred eecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeec-cccCce---EEE-
Q 011452 131 LNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESE-SLKWPG---FVE- 199 (485)
Q Consensus 131 l~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~-~~~~~~---~V~- 199 (485)
+.-.|+..|..++||+- =+..|+++ - ..+.|... .+| +..+++.- .-.+.. .++
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG----~-------~rvtiy~c~~d~----~ir~lq~y~D~d~~Esfytcsw 97 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG----G-------NRVTIYECPGDG----GIRLLQSYADEDHDESFYTCSW 97 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeC----C-------cEEEEEEECCcc----ceeeeeeccCCCCCcceEEEEE
Confidence 44457778999999853 23344433 1 35555543 233 23345431 001111 233
Q ss_pred -EeCCC-CeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 200 -FDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 200 -Fs~pn-G~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
++..+ ..+||-++.-|.|||-|+.++++...+ |++.|++|+|.|.. .|+.++| .|.+||||+|+++.|+..|-
T Consensus 98 ~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S--kD~svRlwnI~~~~Cv~VfG 175 (385)
T KOG1034|consen 98 SYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS--KDHSVRLWNIQTDVCVAVFG 175 (385)
T ss_pred EecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec--CCceEEEEeccCCeEEEEec
Confidence 33222 468899999999999999999987655 67899999999843 4555544 55899999999999999885
Q ss_pred ---cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec----------------------------ccCCCce
Q 011452 275 ---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS----------------------------RTEFMTP 323 (485)
Q Consensus 275 ---~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l----------------------------~gh~~~v 323 (485)
||-++|.+|+|+ .+++++++++.|++|++|++...+..+-+ .-|.+.|
T Consensus 176 G~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred ccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 788889999997 78899999999999999999854321111 1122223
Q ss_pred EEEEEcCCCcEEEEEe-CCcEEEEeC-C-C---------cEEEEeecCCCCCCCCCeeEEEE--CCCCCEEEEEecCCCC
Q 011452 324 SAFIFLYENQLFLTFR-NRTVAVWNF-R-G---------ELVTSFEDHLLWHPDCNTNNIYI--TSDQDLIISYCKADSD 389 (485)
Q Consensus 324 ~avaFspdg~llaS~s-D~TIklWd~-~-G---------~ll~tl~gH~~~~~~~~v~svaf--SpDG~~LaS~s~d~~~ 389 (485)
-++-|. |.+++|=| ++.|-.|-. + + +.-.|.-++-. .+.|.++-|-| .|-++.||.|..
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~gnq---- 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLALGNQ---- 327 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhhccC----
Confidence 333222 67899988 999999987 3 3 32334434433 35676777765 456899998876
Q ss_pred CCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC
Q 011452 390 DPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN 469 (485)
Q Consensus 390 d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~ 469 (485)
-|+|.+||+..-+.. +..-|. |.+. . ..|+..+||.||.
T Consensus 328 -------~g~v~vwdL~~~ep~-~~ttl~------------------~s~~-----~----------~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 328 -------SGKVYVWDLDNNEPP-KCTTLT------------------HSKS-----G----------STVRQTSFSRDGS 366 (385)
T ss_pred -------CCcEEEEECCCCCCc-cCceEE------------------eccc-----c----------ceeeeeeecccCc
Confidence 699999999764432 111111 1011 1 2899999999999
Q ss_pred EEEEecCCCcEEEcc
Q 011452 470 EIYTGNRHGLVHVWS 484 (485)
Q Consensus 470 ~LaSgs~DgtVklWd 484 (485)
+|+--..|++|--||
T Consensus 367 ~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWD 381 (385)
T ss_pred EEEEEeCCCcEEEEE
Confidence 999999999998887
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.7e-17 Score=167.51 Aligned_cols=294 Identities=14% Similarity=0.144 Sum_probs=211.3
Q ss_pred EEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCc-CcccceeeeccccCceEEEEeCCCCe
Q 011452 129 CFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKP-DAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
++.-..+...|.+++|.|--. .|+.|+. |.++|-+|++...+. ..+..+|.. +...+..+.|+|.|-.
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~Gd---------K~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s 248 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGD---------KGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTS 248 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEcc---------CCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChh
Confidence 334445778899999999755 5554442 236999999843333 345667775 5566778999987777
Q ss_pred EEEEeeCCCcEEEeecCCCe--EEEEEcC--CcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeE-EEEeecCCcce
Q 011452 207 VLTYSAQDSIYKVFDLKNYT--MLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV-LKSFNHLLHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~--~l~tl~~--~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~-L~tl~~~~~~~ 280 (485)
.+.++|.|||||+=|++++. +++++.+ ....+..|+ ..+++++.. .-+-.-+||+.++.- ...+.-|...|
T Consensus 249 ~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~---~~G~f~~iD~R~~~s~~~~~~lh~kKI 325 (498)
T KOG4328|consen 249 QIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD---NVGNFNVIDLRTDGSEYENLRLHKKKI 325 (498)
T ss_pred heeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee---cccceEEEEeecCCccchhhhhhhccc
Confidence 78888999999999999765 5677743 356788898 477777652 235788999987654 66666666788
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCe-----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----- 349 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----- 349 (485)
..|++.|..+..||++|-|+|+||||++.-. .+.+ ..|...|.++-|||.+-.|+|-+ |.+|+|||..
T Consensus 326 ~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst-~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~ 404 (498)
T KOG4328|consen 326 TSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLST-LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK 404 (498)
T ss_pred ceeecCCCCchheeecccCcceeeeehhhhcCCCCcceec-ccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc
Confidence 9999998888999999999999999998632 1333 46999999999999988899999 9999999982
Q ss_pred CcEEEEeecCCCCCCC-CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccccc
Q 011452 350 GELVTSFEDHLLWHPD-CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~-~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~ 428 (485)
-+.+.++. |...+-. -..--.+|-||-.+|++|-. -.-|-|.|-..||.+..|-+-..
T Consensus 405 ~~p~~~I~-Hn~~t~RwlT~fKA~W~P~~~li~vg~~-----------~r~IDv~~~~~~q~v~el~~P~~--------- 463 (498)
T KOG4328|consen 405 DEPLGTIP-HNNRTGRWLTPFKAAWDPDYNLIVVGRY-----------PRPIDVFDGNGGQMVCELHDPES--------- 463 (498)
T ss_pred CCccceee-ccCcccccccchhheeCCCccEEEEecc-----------CcceeEEcCCCCEEeeeccCccc---------
Confidence 22333332 3221000 01245678999999999987 35699999877777776643220
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEE-EEEcCCCCEEEEe-cCCCcEEEccC
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITA-LFYDEDRNEIYTG-NRHGLVHVWSN 485 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l~fspDg~~LaSg-s~DgtVklWd~ 485 (485)
..|.+ ..|+|-+..|++| +.-|.|.||-+
T Consensus 464 ----------------------------~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 464 ----------------------------STIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred ----------------------------cccccceeecccccceeccCCccceEEEEec
Confidence 02333 4799999955555 57899999953
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=172.27 Aligned_cols=253 Identities=15% Similarity=0.180 Sum_probs=187.8
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---E--EEEEcCCc---EEEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---M--LYSISDKN---VQEIK 240 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~--l~tl~~~~---V~~Va 240 (485)
+++|||...-..+.-+.-.+.++. +.++.+...|--++|+.+.|+.|++|. +.|+ . +..+.++. |.++.
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t~~pg--~~s~~w~~~n~lvvas~~gdk~~~~~~-K~g~~~~Vp~~~k~~gd~~~Cv~~~s 89 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQTAEPG--DFSFNWQRRNFLVVASMAGDKVMRIKE-KDGKTPEVPRVRKLTGDNAFCVACAS 89 (673)
T ss_pred ceEEeecccccCccccccCCCCCc--ceeeeccccceEEEeecCCceeEEEec-ccCCCCccceeeccccchHHHHhhhh
Confidence 799999843332211111111221 345667644446778888999999998 4444 1 22222332 45555
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC-
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE- 319 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh- 319 (485)
+| +.++++..+ ++|||||++.--+.+.+++|+..|..|.+. -.+++|++.+..|-|-|-.+.++....++...
T Consensus 90 ~S---~y~~sgG~~--~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN-~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 90 QS---LYEISGGQS--GCVKIWDLRAKLIHRFLKDHQSTVTYVDYN-NTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred cc---eeeeccCcC--ceeeehhhHHHHHhhhccCCcceeEEEEec-CCcceeEEeccCCcEEEEecccCccccceecCC
Confidence 55 666665444 899999999877889999999999999997 45789999999999999999999887777544
Q ss_pred CCceEEEEEcCCCcEEEE-Ee-CCcEEEEeCCCc--EEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCc
Q 011452 320 FMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS-~s-D~TIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~ 394 (485)
...|.-+.|+|-.+.|++ ++ ||+|.|||++|. ...-.+.|..+ ...|+|||-+ .+|+|-+.
T Consensus 164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP-----~~gicfspsne~l~vsVG~--------- 229 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAP-----CRGICFSPSNEALLVSVGY--------- 229 (673)
T ss_pred CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCC-----cCcceecCCccceEEEecc---------
Confidence 345667889999887665 56 999999999865 34556789888 6899999965 56677666
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 395 GNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
|+.|.++|+...+...+|.... +.++|+|+|+|-+|+.|
T Consensus 230 --Dkki~~yD~~s~~s~~~l~y~~---------------------------------------Plstvaf~~~G~~L~aG 268 (673)
T KOG4378|consen 230 --DKKINIYDIRSQASTDRLTYSH---------------------------------------PLSTVAFSECGTYLCAG 268 (673)
T ss_pred --cceEEEeecccccccceeeecC---------------------------------------CcceeeecCCceEEEee
Confidence 8999999998777777775532 77899999999999999
Q ss_pred cCCCcEEEccC
Q 011452 475 NRHGLVHVWSN 485 (485)
Q Consensus 475 s~DgtVklWd~ 485 (485)
+..|.|-.+|+
T Consensus 269 ~s~G~~i~YD~ 279 (673)
T KOG4378|consen 269 NSKGELIAYDM 279 (673)
T ss_pred cCCceEEEEec
Confidence 99999988774
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-16 Score=159.36 Aligned_cols=282 Identities=15% Similarity=0.183 Sum_probs=205.9
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
+-+||.-.+ -.++-||+.|..||++-++ +.+-|||.-+-.+ ...|. .|...+-++++| +||+
T Consensus 17 l~~tld~~~---a~~~~Fs~~G~~lAvGc~n----------G~vvI~D~~T~~i---ar~ls-aH~~pi~sl~WS-~dgr 78 (405)
T KOG1273|consen 17 LTHTLDNPL---AECCQFSRWGDYLAVGCAN----------GRVVIYDFDTFRI---ARMLS-AHVRPITSLCWS-RDGR 78 (405)
T ss_pred hceeccCCc---cceEEeccCcceeeeeccC----------CcEEEEEccccch---hhhhh-ccccceeEEEec-CCCC
Confidence 445665433 5789999999999997654 4788999855443 12343 366667789998 7999
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCe--EEEEee-cCCcce
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGT--VLKSFN-HLLHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~--~L~tl~-~~~~~~ 280 (485)
.|.++|.|..|++||+..|.+++.+. ...|+.+.|+| ..+.+++--. ..-.+-++.+++ +|-+=. +.+..+
T Consensus 79 ~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~---~sp~vi~~s~~~h~~Lp~d~d~dln~s 155 (405)
T KOG1273|consen 79 KLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIME---ESPVVIDFSDPKHSVLPKDDDGDLNSS 155 (405)
T ss_pred EeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEec---CCcEEEEecCCceeeccCCCccccccc
Confidence 99999999999999999999999986 67999999998 4444443222 122233333321 111100 111111
Q ss_pred eE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----C--
Q 011452 281 KK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----G-- 350 (485)
Q Consensus 281 ~~-V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~~-----G-- 350 (485)
.+ +.| .+.|+++++|-..|-+-++|..|-+|+..++--. ..|..+.|+-.|+.|+.-+ |++||.++.+ |
T Consensus 156 as~~~f-dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~ 234 (405)
T KOG1273|consen 156 ASHGVF-DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRD 234 (405)
T ss_pred cccccc-cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCcc
Confidence 11 224 3668899999999999999999999988876555 6889999999999999988 9999999863 1
Q ss_pred -cE--EEE---eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 351 -EL--VTS---FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 351 -~l--l~t---l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
+. .+. +-.-..| +.++||.||.|+..++. ..-.+.||.-.+|.+++.|.|..+
T Consensus 235 ~e~e~~~K~qDvVNk~~W------k~ccfs~dgeYv~a~s~----------~aHaLYIWE~~~GsLVKILhG~kg----- 293 (405)
T KOG1273|consen 235 GEVEPEHKLQDVVNKLQW------KKCCFSGDGEYVCAGSA----------RAHALYIWEKSIGSLVKILHGTKG----- 293 (405)
T ss_pred CCcChhHHHHHHHhhhhh------hheeecCCccEEEeccc----------cceeEEEEecCCcceeeeecCCch-----
Confidence 21 111 2223345 67999999999998875 478899999999999999988652
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+..-.|.++|-+..|+|- ..|+|.+|.
T Consensus 294 --------------------------------E~l~DV~whp~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 294 --------------------------------EELLDVNWHPVRPIIASI-ASGVVYIWA 320 (405)
T ss_pred --------------------------------hheeecccccceeeeeec-cCCceEEEE
Confidence 144457899999999998 789999995
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-15 Score=159.68 Aligned_cols=236 Identities=10% Similarity=0.067 Sum_probs=163.1
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.+||.+ |.....+.. +.+.+.+..|||||+.||.++.... + ..+.+|++..|+.. .+... ..+.
T Consensus 180 ~l~~~d~d-g~~~~~lt~-~~~~~~~p~wSPDG~~la~~s~~~g-~------~~i~i~dl~~G~~~---~l~~~--~~~~ 245 (429)
T PRK03629 180 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESG-R------SALVIQTLANGAVR---QVASF--PRHN 245 (429)
T ss_pred eEEEEcCC-CCCCEEeec-CCCceeeeEEcCCCCEEEEEEecCC-C------cEEEEEECCCCCeE---EccCC--CCCc
Confidence 68888877 544455554 4567999999999999998874332 2 47888998888652 22221 1334
Q ss_pred eEEEEeCCCCeEEEEe-eCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC-CeeEEEEecCCCeEE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG-HVPLKILSIEDGTVL 270 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~--tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~-D~tIklWdi~tG~~L 270 (485)
..++|+ |||+.|+.. +.++ .|.+||++++++..... ...+.+.+|||++..+++.+... ...|.++|+.+|+.
T Consensus 246 ~~~~~S-PDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~- 323 (429)
T PRK03629 246 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP- 323 (429)
T ss_pred CCeEEC-CCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-
Confidence 478998 799998875 3344 58899999887644333 24678899999776555544322 12344457777755
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEe-C--CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCc---E
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT---V 343 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s-~--D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~T---I 343 (485)
+.+..+.+....+.|+ |++.+|+..+ . ...|.+||+.+++.......+ ......|+|||+.|+.++ |+. +
T Consensus 324 ~~lt~~~~~~~~~~~S-pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l 400 (429)
T PRK03629 324 QRITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVL 400 (429)
T ss_pred EEeecCCCCccCEEEC-CCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEE
Confidence 3444333445567786 7888888764 3 356889999999865544332 234678999999999988 764 6
Q ss_pred EEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 344 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.+|+++|+..+.|.+|... +...+|||
T Consensus 401 ~~~~~~G~~~~~l~~~~~~-----~~~p~Wsp 427 (429)
T PRK03629 401 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 427 (429)
T ss_pred EEEECCCCCeEECccCCCC-----cCCcccCC
Confidence 7888899999999888765 67788877
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-16 Score=162.48 Aligned_cols=278 Identities=15% Similarity=0.195 Sum_probs=190.2
Q ss_pred ccceEEEEEe----cCEEEEEeCCCeEEeeecccCc----EEEEeecCCcccEEEEEEeeCCCE-EEEEEeecCCCCccc
Q 011452 95 RSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQ----RICFLNVTADEVIRSLFYNKNNDS-LITVSVYASDNFSSL 165 (485)
Q Consensus 95 ~s~V~~i~~s----~~~ias~s~dgtiklW~~~tG~----~l~tl~g~~~~~i~sv~~spdg~~-Las~S~d~~~d~stL 165 (485)
...|.+++|- ..+||+|+..|+|-+||..+.+ .+.-+++ |...|.++-|+|.+.. +.+.| .|
T Consensus 186 ~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~-hs~~Vs~l~F~P~n~s~i~ssS----yD---- 256 (498)
T KOG4328|consen 186 DRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTP-HSGPVSGLKFSPANTSQIYSSS----YD---- 256 (498)
T ss_pred ccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEecc-CCccccceEecCCChhheeeec----cC----
Confidence 4456666666 4899999999999999995322 2333444 8889999999999865 44434 44
Q ss_pred ceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEcCCcEEEEEE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKNVQEIKI 241 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~~~~V~~Vaf 241 (485)
+++++-|+..+.... +.... ...|.....|+..++.+|+ +..=|..-+||+.++.- ...+|...|.+|++
T Consensus 257 --GtiR~~D~~~~i~e~---v~s~~~d~~~fs~~d~~~e~~~vl~-~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~ 330 (498)
T KOG4328|consen 257 --GTIRLQDFEGNISEE---VLSLDTDNIWFSSLDFSAESRSVLF-GDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL 330 (498)
T ss_pred --ceeeeeeecchhhHH---HhhcCccceeeeeccccCCCccEEE-eecccceEEEEeecCCccchhhhhhhcccceeec
Confidence 699999987776532 22220 1122334667654555554 44445899999986552 34456679999999
Q ss_pred cC-CceEEEEEcCCCCeeEEEEecCC--CeE---EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC----CCCe
Q 011452 242 SP-GIMLLIFTKASGHVPLKILSIED--GTV---LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV----RNFE 311 (485)
Q Consensus 242 Sp-g~~ll~sss~~~D~tIklWdi~t--G~~---L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv----~tg~ 311 (485)
.| .-.+++++ +.|+|+||||+.. ++. |.++. |...|.++.|+ |.++.|++.+.|.+|||||. ..-+
T Consensus 331 NP~~p~~laT~--s~D~T~kIWD~R~l~~K~sp~lst~~-HrrsV~sAyFS-Ps~gtl~TT~~D~~IRv~dss~~sa~~~ 406 (498)
T KOG4328|consen 331 NPVCPWFLATA--SLDQTAKIWDLRQLRGKASPFLSTLP-HRRSVNSAYFS-PSGGTLLTTCQDNEIRVFDSSCISAKDE 406 (498)
T ss_pred CCCCchheeec--ccCcceeeeehhhhcCCCCcceeccc-ccceeeeeEEc-CCCCceEeeccCCceEEeecccccccCC
Confidence 99 44444454 4568999999864 222 44554 67889999998 67788999999999999999 3444
Q ss_pred eEEeccc---CCC--ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 312 LTEVSRT---EFM--TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 312 ~~~~l~g---h~~--~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.+.++.+ |.- .+...+|-||-.+++.+. -+-|-|.|-+ |+++..|-+-.... .-.-+.|.|=+..||+|+
T Consensus 407 p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~t---I~~vn~~HP~~~~~~aG~ 483 (498)
T KOG4328|consen 407 PLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESST---IPSVNEFHPMRDTLAAGG 483 (498)
T ss_pred ccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccc---cccceeecccccceeccC
Confidence 4444422 222 234457999999999999 8889999998 67787775443321 112367899999888887
Q ss_pred cCCCCCCCCcCCCCeEEEEe
Q 011452 385 KADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWd 404 (485)
. .-|.|.||-
T Consensus 484 ~----------s~Gki~vft 493 (498)
T KOG4328|consen 484 N----------SSGKIYVFT 493 (498)
T ss_pred C----------ccceEEEEe
Confidence 5 257777774
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=157.78 Aligned_cols=296 Identities=13% Similarity=0.106 Sum_probs=193.4
Q ss_pred CCCcccccccccccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecC
Q 011452 81 PKGHCSMVLPFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYAS 159 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~ 159 (485)
||....+ +.+ +.+.|.++.|- +++|.+|...|.+++|.++|...++.+.+.+...|..+-.-|++. |.+= |.
T Consensus 3 pPdP~fv-LRp--~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~-l~tq---gR 75 (323)
T KOG0322|consen 3 PPDPFFV-LRP--HSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDS-LDTQ---GR 75 (323)
T ss_pred CCCCeeE-ecc--ccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcc-hhhc---CC
Confidence 3444444 445 78889999988 999999999999999999999999999877888999999999854 5442 22
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEEEEeeCCCcEEEeecC-CCeEEEEEc---CC
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DK 234 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~---~~ 234 (485)
| -.+-+|+|.-+... .-..-.+++.+|..|+- ++++ ...|-+. .++..+..| ..
T Consensus 76 d-------~~L~lw~ia~s~~i----~i~Si~~nslgFCrfSl~~~~k----------~~eqll~yp~rgsde~h~~D~g 134 (323)
T KOG0322|consen 76 D-------PLLILWTIAYSAFI----SIHSIVVNSLGFCRFSLVKKPK----------NSEQLLEYPSRGSDETHKQDGG 134 (323)
T ss_pred C-------ceEEEEEccCcceE----EEeeeeccccccccceeccCCC----------cchhheecCCcccchhhhhccC
Confidence 3 47778887544331 01111233334555531 1111 1111111 011011111 11
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE--EEEEecCCC--EEEEEeCCCcEEEEECCCC
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK--VDFIEQFNE--KLLVKQENENLQILDVRNF 310 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~--V~f~~~~~~--~lls~s~D~tIkIWDv~tg 310 (485)
.-..|.+-|+..+. +. +.+.. +.+ ..+. .|++|-+++.+-+||+.++
T Consensus 135 ~~tqv~i~dd~~~~----------------Kl-----------gsvmc~~~~~--~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 135 DTTQVQIADDSERS----------------KL-----------GSVMCQDKDH--ACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred ccceeEccCchhcc----------------cc-----------Cceeeeeccc--cccceEEEEEeccCCeEEEEEccCC
Confidence 11112222211110 01 11111 111 1122 3455669999999999998
Q ss_pred ee----------EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC---CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 311 EL----------TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR---GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 311 ~~----------~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~---G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.. ......|...|.++.|-+--..=++++ +..+-.|+++ |.|-.. .-|...+|. |+.|.|-||
T Consensus 186 ~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~-~e~~lknpG--v~gvrIRpD 262 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIR-KEITLKNPG--VSGVRIRPD 262 (323)
T ss_pred ceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCccccc-ceEEecCCC--ccceEEccC
Confidence 32 222356888999998877666667888 7788899984 444221 113333333 899999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhccc
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
|+.+|+++. |+-||+++.+|++.|+.|+-|.+
T Consensus 263 ~KIlATAGW-----------D~RiRVyswrtl~pLAVLkyHsa------------------------------------- 294 (323)
T KOG0322|consen 263 GKILATAGW-----------DHRIRVYSWRTLNPLAVLKYHSA------------------------------------- 294 (323)
T ss_pred CcEEeeccc-----------CCcEEEEEeccCCchhhhhhhhc-------------------------------------
Confidence 999999998 79999999999999999999973
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 457 EDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|+|+||...+|.||.|++|-||++
T Consensus 295 -gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 295 -GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 8999999999999999999999999985
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.2e-16 Score=172.03 Aligned_cols=304 Identities=12% Similarity=0.137 Sum_probs=209.5
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec--c
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE--S 191 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~--~ 191 (485)
..+|-.||.. ++++ .+.+=+.+-|+|.-..||+ +| ++ -.|.+||.+.|+...+ |..+ .
T Consensus 1049 t~~i~~W~~~------~~~~-n~~~pk~~~~hpf~p~i~~--ad--~r------~~i~vwd~e~~~~l~~---F~n~~~~ 1108 (1387)
T KOG1517|consen 1049 TNPIGNWDQK------FMTG-NNQPPKTLKFHPFEPQIAA--AD--DR------ERIRVWDWEKGRLLNG---FDNGAFP 1108 (1387)
T ss_pred cccccchHHH------HHhc-CCCCCceeeecCCCceeEE--cC--Cc------ceEEEEecccCceecc---ccCCCCC
Confidence 3446677754 3333 3445678899999999987 33 23 4899999998887332 2221 1
Q ss_pred ccCceEEEE-eCCCCeEEEEeeCCCcEEEeecC-C----CeEEEEE---cC----C-cE-EEEEEc-CCceEEEEEcCCC
Q 011452 192 LKWPGFVEF-DDVNGKVLTYSAQDSIYKVFDLK-N----YTMLYSI---SD----K-NV-QEIKIS-PGIMLLIFTKASG 255 (485)
Q Consensus 192 ~~~~~~V~F-s~pnG~~Las~s~D~tiKlWdl~-~----g~~l~tl---~~----~-~V-~~VafS-pg~~ll~sss~~~ 255 (485)
...+..+++ ...|-.+|..|+.||.||||+-. + .+++..+ .+ . .- .=+.+- -.|.|++++.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd--- 1185 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD--- 1185 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC---
Confidence 122334555 23455678889999999999732 2 2333322 21 1 11 223444 3677777632
Q ss_pred CeeEEEEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---eEEecccCCCc--eEEEEEc
Q 011452 256 HVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---LTEVSRTEFMT--PSAFIFL 329 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---~~~~l~gh~~~--v~avaFs 329 (485)
-..|+|||.+.-++.+.+..-+ .-+.++.-....+..+++|-.||.||++|.+... .+.+.+.|+.. |.-+.|-
T Consensus 1186 ~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq 1265 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ 1265 (1387)
T ss_pred eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEee
Confidence 3799999999888888776321 1233333332335677778899999999999754 47778899988 8889898
Q ss_pred CCCcE-EEEEe-CCcEEEEeCCC-cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 330 YENQL-FLTFR-NRTVAVWNFRG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 330 pdg~l-laS~s-D~TIklWd~~G-~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+.|-- |+|++ ||.|++||+++ ...+.++-...|.++..+..+...++-.+||||+. +.|+||++.
T Consensus 1266 ~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------------q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1266 RQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA------------QLIKIYSLS 1333 (1387)
T ss_pred cCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc------------ceEEEEecC
Confidence 86655 99999 99999999986 44444554444544544789999999999999973 899999976
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+..++.+.. |. +-+. ..+.+|+|+|-.-.||.|+.|.+|-|+.
T Consensus 1334 -G~~l~~~k~n~~----F~-----------------~q~~----------gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1334 -GEQLNIIKYNPG----FM-----------------GQRI----------GSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred -hhhhcccccCcc----cc-----------------cCcC----------CCcceeeecchhHhhhhccCCceEEEee
Confidence 999999986642 11 0000 2678999999999999999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-16 Score=154.13 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=188.9
Q ss_pred CCCeEEeee--cccCcEEEEeecCCcccEEEEEEeeCCCEEE-EEEeecCCCCcccce-eEEEEeEeccCCcC-cccc--
Q 011452 113 QSGVCAAFC--RETNQRICFLNVTADEVIRSLFYNKNNDSLI-TVSVYASDNFSSLRC-RSTRIEYIRRGKPD-AGFA-- 185 (485)
Q Consensus 113 ~dgtiklW~--~~tG~~l~tl~g~~~~~i~sv~~spdg~~La-s~S~d~~~d~stL~~-~t~~lw~i~~G~~~-~~~~-- 185 (485)
.|..|.+-. -+.+.+++....+|.+-||.|+-+|..+.|. |+-. +++..++ ..+-||.|+...-. .+.+
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn----~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYN----DTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEe----ccCCCcceeeEEEEecccccCccccchhh
Confidence 344444433 3335555555556788899999999887654 4332 2333322 34668998543221 1111
Q ss_pred ---eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-EEEEc-------CCcEEEEEEcC---CceEEEEE
Q 011452 186 ---LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-------DKNVQEIKISP---GIMLLIFT 251 (485)
Q Consensus 186 ---lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l~tl~-------~~~V~~VafSp---g~~ll~ss 251 (485)
.+.++.++-+..|+|- ||+..||+-. |..|-||+++.+.. ...+. .+...+=++|| +.+++++
T Consensus 114 ~v~~Ldteavg~i~cvew~-Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt- 190 (370)
T KOG1007|consen 114 CVASLDTEAVGKINCVEWE-PNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT- 190 (370)
T ss_pred HhhcCCHHHhCceeeEEEc-CCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-
Confidence 1222455667789996 7999999876 99999999998775 33332 24567788897 6677665
Q ss_pred cCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCE-EEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEE
Q 011452 252 KASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~-lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaF 328 (485)
.|.|+.-||+.|-++...++ .|.+.+..++|.| .-+. |+++++|+-|||||.+. ...++.+.+|.++||+|.|
T Consensus 191 ---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNp-nkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 191 ---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNP-NKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ---CCCcEEEEEccchhhhcchhhhhcceeeeccCCC-CceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 34799999999988888886 6778899999974 4444 44568999999999985 5679999999999999999
Q ss_pred cCC-CcEEEEEe-CCcEEEEeC------------------------------CCcEEEEeecCCCCCCCCCeeEEEECC-
Q 011452 329 LYE-NQLFLTFR-NRTVAVWNF------------------------------RGELVTSFEDHLLWHPDCNTNNIYITS- 375 (485)
Q Consensus 329 spd-g~llaS~s-D~TIklWd~------------------------------~G~ll~tl~gH~~~~~~~~v~svafSp- 375 (485)
.|. .|+++|++ |..|-||.. ...++.+++.|.+. |+.+++|.
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDS-----VY~~aWSsa 341 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDS-----VYALAWSSA 341 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccc-----eEEEeeccC
Confidence 984 67888988 999999962 11235578888877 99999987
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|-=+.||-|. ||-+-|-++.
T Consensus 342 dPWiFASLSY-----------DGRviIs~V~ 361 (370)
T KOG1007|consen 342 DPWIFASLSY-----------DGRVIISSVP 361 (370)
T ss_pred CCeeEEEecc-----------CceEEeecCC
Confidence 4445566665 7888777654
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=160.76 Aligned_cols=185 Identities=15% Similarity=0.217 Sum_probs=148.6
Q ss_pred CCeEEEEeeCCCcEEEeecCC----------------CeEEEEEcCC--cEEEEEEcC--CceEEEEEcCCCCeeEEEEe
Q 011452 204 NGKVLTYSAQDSIYKVFDLKN----------------YTMLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~----------------g~~l~tl~~~--~V~~VafSp--g~~ll~sss~~~D~tIklWd 263 (485)
+..+.|+=|.-|.|+|||+.. .+.+|++.++ .=..+.||| .|.|++. |--..|.+|-
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsG---Dc~~~I~lw~ 240 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSG---DCVKGIHLWE 240 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccC---ccccceEeee
Confidence 667788888899999999742 1236666544 457899998 6667643 3337899999
Q ss_pred cCCCeEE---EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEE
Q 011452 264 IEDGTVL---KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 264 i~tG~~L---~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
..+|.-. ..|.+|...|..++++|-..+-++++|-|++|||||++++ -|+.+ ..|...|+.+.|+.+-.+|||
T Consensus 241 ~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 241 PSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred eccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-eccCCceeeEEccCCcceeee
Confidence 9988754 4688899999999998766677788899999999999998 56666 789999999999998889999
Q ss_pred Ee-CCcEEEEeCC----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 338 FR-NRTVAVWNFR----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 338 ~s-D~TIklWd~~----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+ |||++|||++ |+.+.+|+-|... |.+|.|+|.-.-.+.++ |.|..|-|||+..
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p-----ItsieW~p~e~s~iaas----------g~D~QitiWDlsv 379 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAP-----ITSIEWHPHEDSVIAAS----------GEDNQITIWDLSV 379 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCC-----eeEEEeccccCceEEec----------cCCCcEEEEEeec
Confidence 99 9999999983 7899999999988 99999999544333332 1379999999864
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=160.21 Aligned_cols=276 Identities=11% Similarity=0.090 Sum_probs=196.5
Q ss_pred EEEEeCCCeEEeeecccCcEE-EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 108 VFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l-~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
|-.+|...++||||...-... |.+.....-.+.++-|+..+. |+++|. +.| ..++||. +.|++ ...++
T Consensus 5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~--~gd------k~~~~~~-K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASM--AGD------KVMRIKE-KDGKT-PEVPR 73 (673)
T ss_pred eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeec--CCc------eeEEEec-ccCCC-Cccce
Confidence 344555668999996532211 222222333599999999886 777774 334 5889998 78883 33444
Q ss_pred eeeccccCceE---EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEE
Q 011452 187 FESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 f~~~~~~~~~~---V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIk 260 (485)
.+.....-..+ ..|+ .++.+|++.++||||||+...+...+.+ ..|..|.+.- |-.+| +.+.+ +-|-
T Consensus 74 ~~k~~gd~~~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiA-svs~g--Gdii 146 (673)
T KOG4378|consen 74 VRKLTGDNAFCVACASQS----LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIA-SVSDG--GDII 146 (673)
T ss_pred eeccccchHHHHhhhhcc----eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeE-EeccC--CcEE
Confidence 44311111122 3454 7999999999999999995445566655 4799999994 65555 44554 6788
Q ss_pred EEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCee-EEecccCCCceEEEEEcCCCc-EEE
Q 011452 261 ILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYENQ-LFL 336 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFspdg~-lla 336 (485)
|-.+.|+..-.+|.+.. ..++-+.|+ ++-..||+ .++||+|.|||++.... ......|......|+|+|-+. +|+
T Consensus 147 ih~~~t~~~tt~f~~~sgqsvRll~ys-~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 147 IHGTKTKQKTTTFTIDSGQSVRLLRYS-PSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred EEecccCccccceecCCCCeEEEeecc-cccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99999999888998543 344577887 45555555 58999999999997655 445678999999999999665 556
Q ss_pred EEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEE
Q 011452 337 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAK 413 (485)
Q Consensus 337 S~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~t 413 (485)
|-+ |..|-++|.. .+...+|.-.. + ..+|+|+|+|.+|+.|+. .|.|--+|+.. ...+++
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~-P-----lstvaf~~~G~~L~aG~s-----------~G~~i~YD~R~~k~Pv~v 288 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH-P-----LSTVAFSECGTYLCAGNS-----------KGELIAYDMRSTKAPVAV 288 (673)
T ss_pred EecccceEEEeecccccccceeeecC-C-----cceeeecCCceEEEeecC-----------CceEEEEecccCCCCceE
Confidence 667 9999999996 55555555322 1 578999999999999875 69999999964 567999
Q ss_pred ecCCCC
Q 011452 414 IRASNG 419 (485)
Q Consensus 414 l~gH~~ 419 (485)
+.+|..
T Consensus 289 ~sah~~ 294 (673)
T KOG4378|consen 289 RSAHDA 294 (673)
T ss_pred eeeccc
Confidence 999973
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-14 Score=153.55 Aligned_cols=274 Identities=9% Similarity=0.070 Sum_probs=171.2
Q ss_pred eEEeeecccCcEEEEe--ecCCcccEEEEEE--------------eeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 116 VCAAFCRETNQRICFL--NVTADEVIRSLFY--------------NKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 116 tiklW~~~tG~~l~tl--~g~~~~~i~sv~~--------------spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
.++|||..+|+.|... .+ +.+..|.++. -..+..||.++..+..+ -...++.+||. .|.
T Consensus 120 ~~~l~d~~~~~~~~~~~~~~-~~~~~r~~ah~~~d~i~~~~tg~~g~f~~~ia~v~~~~~~~---~~~~~l~i~D~-~g~ 194 (433)
T PRK04922 120 EYELFDVFKGERLLGLRLTA-PASAMRQAAHQIADAIYEKITGVPGAFWTRIAYVTVSGAGG---AMRYALQVADS-DGY 194 (433)
T ss_pred EEEEEECCCCCEeeceEEEe-CHHHHHHHHHHHHHHHHHHHcCCCCcccceEEEEEEeCCCC---CceEEEEEECC-CCC
Confidence 5899999888876532 22 2221222210 01122455554422211 23357888886 443
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCce-EEEEEcCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIM-LLIFTKAS 254 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~ 254 (485)
.. ..+... -..+.+.+|+ |||+.|++.+.+ ..|.+||+.+|+..... ....+.+++|||++. ++.+.+.+
T Consensus 195 ~~--~~lt~~--~~~v~~p~wS-pDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~ 269 (433)
T PRK04922 195 NP--QTILRS--AEPILSPAWS-PDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD 269 (433)
T ss_pred Cc--eEeecC--CCccccccCC-CCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC
Confidence 21 123322 2234578898 799999998743 47999999988753221 123455789998664 55554444
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCc--EEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~t--IkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
+...|.+||+.+|++. .+..+......++|+ |++.+|+..+ .++. |-++|+.+++..+.. .+.......+||||
T Consensus 270 g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~s-pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~~~~~SpD 346 (433)
T PRK04922 270 GNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWA-PDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNARASVSPD 346 (433)
T ss_pred CCceEEEEECCCCCeE-ECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCccCEEECCC
Confidence 4567999999998754 455554455678896 7888888876 4555 555577777754433 22233456899999
Q ss_pred CcEEEEEe-CC---cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 332 NQLFLTFR-NR---TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 332 g~llaS~s-D~---TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|+.|+..+ ++ .|.+||+. |++. .|... .+ ..+..|+|||++|+..+.. +....|.++++.
T Consensus 347 G~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~-~~-----~~~p~~spdG~~i~~~s~~--------~g~~~L~~~~~~ 411 (433)
T PRK04922 347 GKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPG-SL-----DESPSFAPNGSMVLYATRE--------GGRGVLAAVSTD 411 (433)
T ss_pred CCEEEEEECCCCceeEEEEECCCCCeE-ECCCC-CC-----CCCceECCCCCEEEEEEec--------CCceEEEEEECC
Confidence 99998765 32 69999997 5544 55422 23 4567999999999887751 223568888874
Q ss_pred CCeEEEEecCCC
Q 011452 407 TGKCLAKIRASN 418 (485)
Q Consensus 407 TGk~l~tl~gH~ 418 (485)
|.....+..+.
T Consensus 412 -g~~~~~l~~~~ 422 (433)
T PRK04922 412 -GRVRQRLVSAD 422 (433)
T ss_pred -CCceEEcccCC
Confidence 66677776554
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=151.87 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=123.2
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
..+|.+||...+. ...+. ...|.+.+|||++..+++.+ .+.+..|.+||+.+|+... +..+.+.+..++|+ |++
T Consensus 183 ~~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~S-pDG 259 (433)
T PRK04922 183 RYALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFS-PDG 259 (433)
T ss_pred eEEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceEC-CCC
Confidence 3578999986443 33343 45799999999776555544 3334679999999987643 33333445578886 788
Q ss_pred CEEEEE-eCCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc--EEEEeCC-CcEEEEeecCCCC
Q 011452 291 EKLLVK-QENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--VAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 291 ~~lls~-s~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T--IklWd~~-G~ll~tl~gH~~~ 362 (485)
.+|+.. +.++ .|.+||+.++++.+ +..|......++|+|||+.|+..+ ++. |-++|+. |+. +.+..+...
T Consensus 260 ~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~~ 337 (433)
T PRK04922 260 RRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGNY 337 (433)
T ss_pred CEEEEEEeCCCCceEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCCC
Confidence 888764 4444 69999999998755 445555556789999999888776 455 5555665 543 333322222
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
...++|||||++|+-.+.+ +....|.+||+.+|+.. .|.
T Consensus 338 -----~~~~~~SpDG~~Ia~~~~~--------~~~~~I~v~d~~~g~~~-~Lt 376 (433)
T PRK04922 338 -----NARASVSPDGKKIAMVHGS--------GGQYRIAVMDLSTGSVR-TLT 376 (433)
T ss_pred -----ccCEEECCCCCEEEEEECC--------CCceeEEEEECCCCCeE-ECC
Confidence 3468999999999987641 12347999999988764 443
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.7e-16 Score=166.63 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=155.2
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC--------CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE--------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~--------tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+-|+..+|.|-.--+++++ .|++||||+++ .-+.+.+|.+|.+.|-+|+.. ..++.+.+++.|++||.
T Consensus 294 ~d~ir~l~~~~sep~lit~s--ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 294 DDCIRALAFHPSEPVLITAS--EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHCYSGGIDGTIRC 370 (577)
T ss_pred hhhhhhhhcCCCCCeEEEec--cccchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEEEeeccCceeee
Confidence 35788899997333344443 45899999993 234678999999999999984 56889999999999999
Q ss_pred EECC------CC----eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeec---------------
Q 011452 305 LDVR------NF----ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFED--------------- 358 (485)
Q Consensus 305 WDv~------tg----~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~g--------------- 358 (485)
|++- .. -+..++.||++.||.+++|+..+.|++++ |||+++|+..++...+|..
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss 450 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSS 450 (577)
T ss_pred eccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccc
Confidence 9543 11 35667889999999999999999999999 9999999975332211110
Q ss_pred ---CC---------------------------CC--CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 359 ---HL---------------------------LW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 359 ---H~---------------------------~~--~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|. .. ...+.++-|.-.|.+.+.+++-. |++|++.|..
T Consensus 451 ~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he-----------d~~Ir~~dn~ 519 (577)
T KOG0642|consen 451 RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE-----------DRSIRFFDNK 519 (577)
T ss_pred hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-----------CCceeccccc
Confidence 10 00 00123566667777777777654 7999999999
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+|+.++...+|-+ .|+++++.|+|-+|+||+.|+.|++|.+
T Consensus 520 ~~~~l~s~~a~~~--------------------------------------svtslai~~ng~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 520 TGKILHSMVAHKD--------------------------------------SVTSLAIDPNGPYLMSGSHDGSVRLWKL 560 (577)
T ss_pred ccccchheeeccc--------------------------------------eecceeecCCCceEEeecCCceeehhhc
Confidence 9999999988863 8999999999999999999999999975
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=158.42 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=138.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEE-E
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVL-K 271 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L-~ 271 (485)
++++.-..-.+|||||.|.||||||+.+|++..++. +..|++++|.| ...||++ +.|++|+|-|...-.+. +
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---s~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSG---SYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEec---cccceEEeeeccCccccCc
Confidence 455543345789999999999999999999998885 67999999997 5555543 56799999998731111 1
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeC
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF 348 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~ 348 (485)
..+ ..+.+..|++.+.....++++.+||+|+=.|+|+ |+++.++..|...|+.+.+++.-. +++|++ |++||||++
T Consensus 325 ~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~ 403 (463)
T KOG0270|consen 325 EWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKF 403 (463)
T ss_pred eEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEee
Confidence 111 1256778888754455677778999999999997 499999999999999999887554 577778 999999999
Q ss_pred CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 349 RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 349 ~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.+.--..-..|..- .+...+.++-|+=-.+...+ |..+-++|||+.+..-
T Consensus 404 ~~~~~~~v~~~~~~--~~rl~c~~~~~~~a~~la~G----------G~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 404 DVDSPKSVKEHSFK--LGRLHCFALDPDVAFTLAFG----------GEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCCccccccccc--ccceeecccCCCcceEEEec----------CccceEEEeecccChh
Confidence 53321112223221 11133445555544433332 2357899999876543
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.7e-16 Score=164.56 Aligned_cols=236 Identities=13% Similarity=0.162 Sum_probs=185.0
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc---eEEEEEcCC------------
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI---MLLIFTKAS------------ 254 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~---~ll~sss~~------------ 254 (485)
|.+-+.+++-+ |.|..||||+.|||||||.+.||.|++++. +..|++|+|+|+. .||++....
T Consensus 399 Htg~Vr~iSvd-p~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~ 477 (733)
T KOG0650|consen 399 HTGLVRSISVD-PSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRL 477 (733)
T ss_pred cCCeEEEEEec-CCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchh
Confidence 55556678886 689999999999999999999999999997 6799999999833 233332111
Q ss_pred -----------------CCeeEEEEecCC---Ce--EEEEeecCCcceeEEEEEecCCCEEEEE---eCCCcEEEEECCC
Q 011452 255 -----------------GHVPLKILSIED---GT--VLKSFNHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRN 309 (485)
Q Consensus 255 -----------------~D~tIklWdi~t---G~--~L~tl~~~~~~~~~V~f~~~~~~~lls~---s~D~tIkIWDv~t 309 (485)
.|.++-.|.-.. ++ +-.++ -|-..+..|.|. -.|++|++. +....|-|.++..
T Consensus 478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I-~~~k~i~~vtWH-rkGDYlatV~~~~~~~~VliHQLSK 555 (733)
T KOG0650|consen 478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVI-KHPKSIRQVTWH-RKGDYLATVMPDSGNKSVLIHQLSK 555 (733)
T ss_pred hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEE-ecCCccceeeee-cCCceEEEeccCCCcceEEEEeccc
Confidence 011223454321 11 00112 234567788887 568899885 3667889999998
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
+..+..++--.+.|-++.|.|-.-+|+.++-+.|+|+|+- ++++..|.--.-| |.+++++|.|+-|+.++.
T Consensus 556 ~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kw-----iS~msihp~GDnli~gs~--- 627 (733)
T KOG0650|consen 556 RKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKW-----ISSMSIHPNGDNLILGSY--- 627 (733)
T ss_pred ccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCee-----eeeeeecCCCCeEEEecC---
Confidence 8777777666678999999999999999999999999994 9998888777778 999999999999999987
Q ss_pred CCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 389 DDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
|+.+-.+|+.- -+..++++-|.. .|++|+|++-
T Consensus 628 --------d~k~~WfDldlsskPyk~lr~H~~--------------------------------------avr~Va~H~r 661 (733)
T KOG0650|consen 628 --------DKKMCWFDLDLSSKPYKTLRLHEK--------------------------------------AVRSVAFHKR 661 (733)
T ss_pred --------CCeeEEEEcccCcchhHHhhhhhh--------------------------------------hhhhhhhccc
Confidence 79998889864 367788888873 8999999999
Q ss_pred CCEEEEecCCCcEEEc
Q 011452 468 RNEIYTGNRHGLVHVW 483 (485)
Q Consensus 468 g~~LaSgs~DgtVklW 483 (485)
=..++|||.||+|.|.
T Consensus 662 yPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 662 YPLFASGSDDGTVIVF 677 (733)
T ss_pred cceeeeecCCCcEEEE
Confidence 9999999999999885
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.4e-15 Score=163.08 Aligned_cols=239 Identities=13% Similarity=0.160 Sum_probs=167.7
Q ss_pred EEEEeCC--CCeEEEEeeCCCcEEEeecCCCeEE------EEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 197 FVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTML------YSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~p--nG~~Las~s~D~tiKlWdl~~g~~l------~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
.+.|++. .-.+||-+-.||-|.|+|.+.-... +-. |.+.|.++++-|+.++++++++ |.|+|+||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG--DsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG--DSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--Cceeeeeeecc
Confidence 4667532 3467899999999999997643321 222 4568999999999999998764 58999999999
Q ss_pred CeEEEE--eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-------eEE--------------------ecc
Q 011452 267 GTVLKS--FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-------LTE--------------------VSR 317 (485)
Q Consensus 267 G~~L~t--l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-------~~~--------------------~l~ 317 (485)
+++... +-||+..+.+++|.+.+..-+++|+.|+.|.|||++-.. +.+ ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~k 211 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWK 211 (720)
T ss_pred ceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccc
Confidence 999877 889999999999985545556667899999999987322 111 112
Q ss_pred cCCCceEE---EEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEE------eecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 318 TEFMTPSA---FIFLYENQLFLTFR--NRTVAVWNFR-GELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 318 gh~~~v~a---vaFspdg~llaS~s--D~TIklWd~~-G~ll~t------l~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.|...+.+ +.|.-|..+|||++ |++||+||++ ..+... ..-|.....--.+.++....-|.+|...|.
T Consensus 212 A~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt 291 (720)
T KOG0321|consen 212 AASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT 291 (720)
T ss_pred cccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec
Confidence 34455666 66777888888888 9999999985 333322 111211000111556777777888888887
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCC--eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 386 ADSDDPLAEGNAGSINISNILTG--KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TG--k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
|++|.+||+.+- ..++.+.+|.+ .. -.|- -.
T Consensus 292 -----------D~sIy~ynm~s~s~sP~~~~sg~~~-------------------------~s----------f~vk-s~ 324 (720)
T KOG0321|consen 292 -----------DNSIYFYNMRSLSISPVAEFSGKLN-------------------------SS----------FYVK-SE 324 (720)
T ss_pred -----------CCcEEEEeccccCcCchhhccCccc-------------------------ce----------eeee-ee
Confidence 799999998642 23344444431 11 0222 35
Q ss_pred EcCCCCEEEEecCCCcEEEcc
Q 011452 464 YDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklWd 484 (485)
.|||++.|+||+.|+.+.+|.
T Consensus 325 lSpd~~~l~SgSsd~~ayiw~ 345 (720)
T KOG0321|consen 325 LSPDDCSLLSGSSDEQAYIWV 345 (720)
T ss_pred cCCCCceEeccCCCcceeeee
Confidence 799999999999999999996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-14 Score=151.47 Aligned_cols=207 Identities=16% Similarity=0.188 Sum_probs=143.2
Q ss_pred CcEEEeecCCCeEEE-EEcCCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEE--EEeecCCcceeEEEEEecCC
Q 011452 215 SIYKVFDLKNYTMLY-SISDKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVL--KSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L--~tl~~~~~~~~~V~f~~~~~ 290 (485)
..+.|||.+.+.... +-....+.+.+|||++..+++.+ .+.+..|.+||+.+|+.. ..+. +.+..++|+ ||+
T Consensus 179 ~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~---~~~~~~~~S-PDG 254 (429)
T PRK03629 179 YELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP---RHNGAPAFS-PDG 254 (429)
T ss_pred eeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCC---CCcCCeEEC-CCC
Confidence 478888887655322 22345799999999776555433 334468999999999643 3344 345578886 788
Q ss_pred CEEEEE-eCCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEE--eCCCcEEEEeecCCCCC
Q 011452 291 EKLLVK-QENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWH 363 (485)
Q Consensus 291 ~~lls~-s~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklW--d~~G~ll~tl~gH~~~~ 363 (485)
.+|+.. +.++ .|.+||++++++.+...++ ..+....|+|||+.|+..+ ++..+|| |+.+.....+..+...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~-~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~- 332 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQ- 332 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCC-CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCC-
Confidence 888875 4444 5888999999887665443 4677889999999888776 4566777 5554444455443322
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
.....|||||++|+..+.+ +....|.+||+.+|+. ..|....
T Consensus 333 ----~~~~~~SpDG~~Ia~~~~~--------~g~~~I~~~dl~~g~~-~~Lt~~~------------------------- 374 (429)
T PRK03629 333 ----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGV-QVLTDTF------------------------- 374 (429)
T ss_pred ----ccCEEECCCCCEEEEEEcc--------CCCceEEEEECCCCCe-EEeCCCC-------------------------
Confidence 4578999999999987651 1235699999998874 3444321
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
...+..|||||+.|+.++.|+.
T Consensus 375 --------------~~~~p~~SpDG~~i~~~s~~~~ 396 (429)
T PRK03629 375 --------------LDETPSIAPNGTMVIYSSSQGM 396 (429)
T ss_pred --------------CCCCceECCCCCEEEEEEcCCC
Confidence 1234689999999999998875
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.3e-16 Score=157.78 Aligned_cols=317 Identities=15% Similarity=0.143 Sum_probs=212.6
Q ss_pred ccchhhhhhhcccccccCcccccchhHHHhhhcccc--ccccccCCCCccc---ccccccccccceEEEEEe------cC
Q 011452 38 FVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQ--EEYDTHDPKGHCS---MVLPFLRKRSKIIEIVAA------RD 106 (485)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~---~~~~~~~~~s~V~~i~~s------~~ 106 (485)
..|.++.=+...|.+-..-.|.....|.+|-+-|=. ..|+++-.-..+. ..-+. +..+-..++.+ +-
T Consensus 29 ~t~~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d--~~Esfytcsw~yd~~~~~p 106 (385)
T KOG1034|consen 29 YTNHLKEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADED--HDESFYTCSWSYDSNTGNP 106 (385)
T ss_pred eeeehhccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCC--CCcceEEEEEEecCCCCCe
Confidence 455555555555655555555556666666655433 3333333222111 11122 34445555555 44
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
++|+++.-|.||+.|..++++...+.+ |...|+.|-|.|+. |+|+++| .| +++|||+|+++.+ ..
T Consensus 107 ~la~~G~~GvIrVid~~~~~~~~~~~g-hG~sINeik~~p~~~qlvls~S----kD------~svRlwnI~~~~C---v~ 172 (385)
T KOG1034|consen 107 FLAAGGYLGVIRVIDVVSGQCSKNYRG-HGGSINEIKFHPDRPQLVLSAS----KD------HSVRLWNIQTDVC---VA 172 (385)
T ss_pred eEEeecceeEEEEEecchhhhccceec-cCccchhhhcCCCCCcEEEEec----CC------ceEEEEeccCCeE---EE
Confidence 799999999999999999999999988 88899999999997 5667766 45 7999999999998 34
Q ss_pred eeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEe
Q 011452 186 LFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 186 lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWd 263 (485)
+|.. +|..++.+|.|+ ++|..|+|++.|.++|+|++...+.-..+. .++.|+|+.... +
T Consensus 173 VfGG~egHrdeVLSvD~~-~~gd~i~ScGmDhslk~W~l~~~~f~~~lE----~s~~~~~~~t~~---------p----- 233 (385)
T KOG1034|consen 173 VFGGVEGHRDEVLSVDFS-LDGDRIASCGMDHSLKLWRLNVKEFKNKLE----LSITYSPNKTTR---------P----- 233 (385)
T ss_pred EecccccccCcEEEEEEc-CCCCeeeccCCcceEEEEecChhHHhhhhh----hhcccCCCCccC---------c-----
Confidence 7775 577778899998 799999999999999999998543221111 124566543311 0
Q ss_pred cCCCeEE-EEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC-CCC---------eeEEecccCCC----ceE-
Q 011452 264 IEDGTVL-KSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV-RNF---------ELTEVSRTEFM----TPS- 324 (485)
Q Consensus 264 i~tG~~L-~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv-~tg---------~~~~~l~gh~~----~v~- 324 (485)
+.+-++. -.| .-|...|..|.| +++.++++|-++.|-.|-. +=+ +.-.+.-++.. .+|
T Consensus 234 fpt~~~~fp~fst~diHrnyVDCvrw---~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWf 310 (385)
T KOG1034|consen 234 FPTPKTHFPDFSTTDIHRNYVDCVRW---FGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWF 310 (385)
T ss_pred CCccccccccccccccccchHHHHHH---HhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEE
Confidence 0111111 111 234455667776 3789999998899999987 211 22222223332 233
Q ss_pred -EEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 325 -AFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 325 -avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
-++|.|-++.||-+. -|+|-+||++ -+ ...|+.-+.. ...|+..+||.||.+|+-.|. |++
T Consensus 311 irf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~---~~tVRQ~sfS~dgs~lv~vcd-----------d~~ 376 (385)
T KOG1034|consen 311 IRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKS---GSTVRQTSFSRDGSILVLVCD-----------DGT 376 (385)
T ss_pred EEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccc---cceeeeeeecccCcEEEEEeC-----------CCc
Confidence 456788899999999 9999999996 33 3445554432 245899999999999999996 799
Q ss_pred EEEEeCC
Q 011452 400 INISNIL 406 (485)
Q Consensus 400 IklWdl~ 406 (485)
|-=||..
T Consensus 377 Vwrwdrv 383 (385)
T KOG1034|consen 377 VWRWDRV 383 (385)
T ss_pred EEEEEee
Confidence 9999853
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7e-16 Score=158.31 Aligned_cols=131 Identities=14% Similarity=0.185 Sum_probs=112.8
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-------eeEEecccCCCceEEEEEcCCC-cEEEEEe-CCc
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-------ELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 342 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-------~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~T 342 (485)
.+.||.+.+-.++|.|..+.-|+++|+|.||+||++-.+ +.+..|.||+..|--|++.|-- +.|+|++ |.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 456999999999998555556666799999999998644 3467789999999999998853 4566776 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
|+|||+. |+-+-+|. |.+- |+++.|+.||.+|++.|+ |..|||||..+|+.+..-.+|.+
T Consensus 156 v~iWnv~tgeali~l~-hpd~-----i~S~sfn~dGs~l~Ttck-----------DKkvRv~dpr~~~~v~e~~~heG 216 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD-HPDM-----VYSMSFNRDGSLLCTTCK-----------DKKVRVIDPRRGTVVSEGVAHEG 216 (472)
T ss_pred EEEEeccCCceeeecC-CCCe-----EEEEEeccCCceeeeecc-----------cceeEEEcCCCCcEeeecccccC
Confidence 9999995 99888887 7766 999999999999999998 79999999999999999999985
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-14 Score=145.05 Aligned_cols=277 Identities=15% Similarity=0.179 Sum_probs=191.3
Q ss_pred cccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEeccCCcCcc--cceeee---ccccCceEEEEeCCCCeEEE
Q 011452 136 DEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FALFES---ESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 136 ~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~--~~lf~~---~~~~~~~~V~Fs~pnG~~La 209 (485)
.+.|.++.|.++.. .|||++. | ..++||.+.+++...+ ...|.. .|...+..|.|+ |+|.+||
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~----D------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~-p~gelLA 81 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGG----D------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFS-PDGELLA 81 (434)
T ss_pred CCceEEEEeccCcccceecccC----c------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEc-CCcCeee
Confidence 35799999999988 8888663 3 5899999988887553 222322 244556678998 8999999
Q ss_pred EeeCCCcEEEeecC--------C--------CeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 210 YSAQDSIYKVFDLK--------N--------YTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 210 s~s~D~tiKlWdl~--------~--------g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
||+++++|-+|-.. + ..-...+ |...|.+++++|+++.+++++ .|+++++||+..|++++
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s--~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS--VDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee--ccceEEEEEeccceeEe
Confidence 99999999999876 2 1112233 346899999999999988865 45899999999999999
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--------c-----------CCC----ceEEEEE
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--------T-----------EFM----TPSAFIF 328 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--------g-----------h~~----~v~avaF 328 (485)
.+.+|.|.+..|++- |.++++++.+.|...+..++.....++... + |.. .-....|
T Consensus 160 ~~~dh~~yvqgvawD-pl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWD-PLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eccccccccceeecc-hhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 999999999999995 678888888888877666655433221110 0 111 2234578
Q ss_pred cCCCcEEEEEe-----CCcEEEEeCCCcEEEEeecCCCCCC-------CCCeeEEEECC------------------CCC
Q 011452 329 LYENQLFLTFR-----NRTVAVWNFRGELVTSFEDHLLWHP-------DCNTNNIYITS------------------DQD 378 (485)
Q Consensus 329 spdg~llaS~s-----D~TIklWd~~G~ll~tl~gH~~~~~-------~~~v~svafSp------------------DG~ 378 (485)
+|||.+|++.+ .+.+.. ...+.|.++.+.-| ...+..+.|+| =+-
T Consensus 239 TPdG~llvtPag~~~~g~~~~~-----n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFR-----NTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred CCCCcEEEcccceeeeCCceee-----ceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 99999999753 444431 11222333322111 11234455554 234
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALE 457 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (485)
..|-++. +.|.|+|.++-+.+..... |- .
T Consensus 314 vfaiAt~------------~svyvydtq~~~P~~~v~nihy--------------------------------------~ 343 (434)
T KOG1009|consen 314 VFAIATK------------NSVYVYDTQTLEPLAVVDNIHY--------------------------------------S 343 (434)
T ss_pred EEEEeec------------ceEEEeccccccceEEEeeeee--------------------------------------e
Confidence 4556664 7899999776555544432 32 2
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEE
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.|+.++|++||..|+-.|.||..-
T Consensus 344 ~iTDiaws~dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 344 AITDIAWSDDGSVLLVSSTDGFCS 367 (434)
T ss_pred eecceeecCCCcEEEEeccCCceE
Confidence 899999999999999999999643
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-14 Score=142.65 Aligned_cols=275 Identities=13% Similarity=0.129 Sum_probs=189.5
Q ss_pred CcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCC
Q 011452 83 GHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNF 162 (485)
Q Consensus 83 ~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~ 162 (485)
+.||-|+|. |++||.|+.||.+-+||..|-..-+.|.+ |--+|.||+||+||..|.|+|+ |
T Consensus 26 a~~~~Fs~~-------------G~~lAvGc~nG~vvI~D~~T~~iar~lsa-H~~pi~sl~WS~dgr~LltsS~----D- 86 (405)
T KOG1273|consen 26 AECCQFSRW-------------GDYLAVGCANGRVVIYDFDTFRIARMLSA-HVRPITSLCWSRDGRKLLTSSR----D- 86 (405)
T ss_pred cceEEeccC-------------cceeeeeccCCcEEEEEccccchhhhhhc-cccceeEEEecCCCCEeeeecC----C-
Confidence 556666666 99999999999999999998665555554 8889999999999999999885 3
Q ss_pred cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c---C---Cc
Q 011452 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S---D---KN 235 (485)
Q Consensus 163 stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~---~---~~ 235 (485)
+.+++||+..|.++..+. |. ..++++.|.|.+-...+..-.+..--|=++.+++ +++ + + +.
T Consensus 87 -----~si~lwDl~~gs~l~rir-f~----spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~ 154 (405)
T KOG1273|consen 87 -----WSIKLWDLLKGSPLKRIR-FD----SPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNS 154 (405)
T ss_pred -----ceeEEEeccCCCceeEEE-cc----CccceeeeccccCCeEEEEEecCCcEEEEecCCc--eeeccCCCcccccc
Confidence 699999999998843211 22 2345677764333332222233333344443322 111 1 1 11
Q ss_pred E-EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEEEeCCCcEEEEECCC----
Q 011452 236 V-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRN---- 309 (485)
Q Consensus 236 V-~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t---- 309 (485)
+ ....|.+-|.+++++... +-+-+.|.+|-+|+.+|+--. ..++.+-|+ .-+..|++-..|.+||.++++.
T Consensus 155 sas~~~fdr~g~yIitGtsK--Gkllv~~a~t~e~vas~rits~~~IK~I~~s-~~g~~liiNtsDRvIR~ye~~di~~~ 231 (405)
T KOG1273|consen 155 SASHGVFDRRGKYIITGTSK--GKLLVYDAETLECVASFRITSVQAIKQIIVS-RKGRFLIINTSDRVIRTYEISDIDDE 231 (405)
T ss_pred ccccccccCCCCEEEEecCc--ceEEEEecchheeeeeeeechheeeeEEEEe-ccCcEEEEecCCceEEEEehhhhccc
Confidence 1 123567644444443322 789999999999999998544 567788885 6688899999999999999872
Q ss_pred CeeEEecccC-------CCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 310 FELTEVSRTE-------FMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 310 g~~~~~l~gh-------~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
|+-.++-.-| .-+=..+.||.||.++..++ -..+-||... |.|++.|.|-.+.. ...|.+.|=--.
T Consensus 232 ~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~----l~DV~whp~rp~ 307 (405)
T KOG1273|consen 232 GRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEE----LLDVNWHPVRPI 307 (405)
T ss_pred CccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhh----eeecccccceee
Confidence 1111111011 11224678999999998887 7799999997 99999999877421 456777777778
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+|-. .|+|.||...+
T Consensus 308 i~si~------------sg~v~iw~~~~ 323 (405)
T KOG1273|consen 308 IASIA------------SGVVYIWAVVQ 323 (405)
T ss_pred eeecc------------CCceEEEEeec
Confidence 88874 49999998754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-13 Score=145.00 Aligned_cols=207 Identities=12% Similarity=0.032 Sum_probs=141.7
Q ss_pred CCcEEEeecCCCeEE-EEEcCCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTML-YSISDKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l-~tl~~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
...|.+||..++... .+-+...|.+.+|||++..+++.+ ..++..|.+||+++|+.. .+..+.+.+...+|+ |++.
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~S-PDG~ 258 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFS-PDGR 258 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEEC-CCCC
Confidence 347888887655432 222356899999999766555543 334578999999998763 444444566788886 7888
Q ss_pred EEEEE-eCCCc--EEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCCC
Q 011452 292 KLLVK-QENEN--LQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s~D~t--IkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~~ 364 (485)
+|+.. +.|+. |.+||+.++++.+ +..|........|+|||+.|+..+ ++ .|.+||++|..++.+..+...
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~-- 335 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGR-- 335 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCc--
Confidence 88765 56665 6666999888755 445665677789999999888766 33 577888876555556544333
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
+....|||||++|+..+.+ +.+..|.+||+.++ ....+.. ..
T Consensus 336 ---~~~~~~SpdG~~ia~~~~~--------~~~~~i~~~d~~~~-~~~~lt~-~~------------------------- 377 (435)
T PRK05137 336 ---YSTPVWSPRGDLIAFTKQG--------GGQFSIGVMKPDGS-GERILTS-GF------------------------- 377 (435)
T ss_pred ---ccCeEECCCCCEEEEEEcC--------CCceEEEEEECCCC-ceEeccC-CC-------------------------
Confidence 5678899999999987641 12357889997654 3444432 10
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.+.++.|+|||+.|+-.+.
T Consensus 378 -------------~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 378 -------------LVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred -------------CCCCCeECCCCCEEEEEEc
Confidence 3446799999999876554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=152.53 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=197.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.|+.|+|-|||..|+.+. ++ .+-|+|...|.+.+ +|- +|..-+..|+++ .||+.+|||+.|+.|
T Consensus 14 ci~d~afkPDGsqL~lAA----g~-------rlliyD~ndG~llq--tLK--gHKDtVycVAys-~dGkrFASG~aDK~V 77 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA----GS-------RLLVYDTSDGTLLQ--PLK--GHKDTVYCVAYA-KDGKRFASGSADKSV 77 (1081)
T ss_pred chheeEECCCCceEEEec----CC-------EEEEEeCCCccccc--ccc--cccceEEEEEEc-cCCceeccCCCceeE
Confidence 799999999999998854 34 67899998887643 222 244456789998 799999999999999
Q ss_pred EEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 218 KVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 218 KlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
-||+-+---.+.--|++.|+++.|.| ...|++. +- ...-+|+.+.-.+.+--. ..++.+.+|. .||++++.|
T Consensus 78 I~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasC-sL---sdFglWS~~qK~V~K~ks--s~R~~~CsWt-nDGqylalG 150 (1081)
T KOG1538|consen 78 IIWTSKLEGILKYSHNDAIQCMSFNPITHQLASC-SL---SDFGLWSPEQKSVSKHKS--SSRIICCSWT-NDGQYLALG 150 (1081)
T ss_pred EEecccccceeeeccCCeeeEeecCchHHHhhhc-ch---hhccccChhhhhHHhhhh--heeEEEeeec-CCCcEEEEe
Confidence 99986532223333678999999999 5555544 33 246789986644433111 2466788886 678888889
Q ss_pred eCCCcEEEEECCCCee--EEecccCCCceEEEEEcCCC-----cEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCe
Q 011452 297 QENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg-----~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v 368 (485)
-.||||-|-|-...+. ++...|....|++++|+|.. ..++... ..|+..+.+.|+.+..=. .....|.|
T Consensus 151 ~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r-~L~FdP~C-- 227 (1081)
T KOG1538|consen 151 MFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDR-ALNFDPCC-- 227 (1081)
T ss_pred ccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccc-cCCCCchh--
Confidence 9999999997653333 44455778899999999964 3566666 778888888887664211 12233444
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
|..-|+|.++.-|+. |+-++++- ..|-.|.|+-..+
T Consensus 228 --isYf~NGEy~LiGGs-----------dk~L~~fT-R~GvrLGTvg~~D------------------------------ 263 (1081)
T KOG1538|consen 228 --ISYFTNGEYILLGGS-----------DKQLSLFT-RDGVRLGTVGEQD------------------------------ 263 (1081)
T ss_pred --heeccCCcEEEEccC-----------CCceEEEe-ecCeEEeeccccc------------------------------
Confidence 456689999998865 79999997 4488888875432
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|||+|+..|++|.++-|..||||..++
T Consensus 264 --------~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 264 --------SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred --------eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 2999999999999999999999998765
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.2e-15 Score=157.06 Aligned_cols=252 Identities=15% Similarity=0.175 Sum_probs=180.3
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc---cceeee-ccccCceEEEEeCCCCeEE
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG---FALFES-ESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~---~~lf~~-~~~~~~~~V~Fs~pnG~~L 208 (485)
.+|.+.|+.++|.|----||++|. | +++++|.++..+.... .++++. .|-+.+-+|... +||+.+
T Consensus 291 ~s~~d~ir~l~~~~sep~lit~se----d------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~-~n~~~~ 359 (577)
T KOG0642|consen 291 RSHDDCIRALAFHPSEPVLITASE----D------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVP-SNGEHC 359 (577)
T ss_pred ecchhhhhhhhcCCCCCeEEEecc----c------cchhhhhhcccCCccccceeeeEEEecccCceEEEEec-CCceEE
Confidence 458889999999998889999874 4 5889999833222111 223332 355566678996 799999
Q ss_pred EEeeCCCcEEEeecC-------CCe---EEEEE--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec
Q 011452 209 TYSAQDSIYKVFDLK-------NYT---MLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (485)
Q Consensus 209 as~s~D~tiKlWdl~-------~g~---~l~tl--~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~ 275 (485)
-+|+.|++|+.|++. ++. +..++ |.+.||.+++|+ -..|+++ +.|+|+++|+...... -+|..
T Consensus 360 ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc---s~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 360 YSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC---SSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred EeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee---cCCceEEeeccCCcCc-cccCC
Confidence 999999999999543 121 22233 456899999995 4445544 4568999999855444 55543
Q ss_pred CCcce--eEEEEEecCCCEEEEEeCCCcE---EEEECCCCeeEEeccc-------CCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 276 LLHRN--KKVDFIEQFNEKLLVKQENENL---QILDVRNFELTEVSRT-------EFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 276 ~~~~~--~~V~f~~~~~~~lls~s~D~tI---kIWDv~tg~~~~~l~g-------h~~~v~avaFspdg~llaS~s-D~T 342 (485)
-..+. .+|+|.. ..++....+.+. .|.|..++.-+.++.- -...++-|+..|.+.+..++- |++
T Consensus 436 ~~e~g~Plsvd~~s---s~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTS---SRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS 512 (577)
T ss_pred ccccCCcceEeecc---chhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc
Confidence 22222 3677642 222222233333 4445555554444421 124677788899999999998 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|++.|.. |+++.....|... |.+++|-|+|=+|+|++. ||.|++|.+....|+....+|.
T Consensus 513 Ir~~dn~~~~~l~s~~a~~~s-----vtslai~~ng~~l~s~s~-----------d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 513 IRFFDNKTGKILHSMVAHKDS-----VTSLAIDPNGPYLMSGSH-----------DGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred eecccccccccchheeeccce-----ecceeecCCCceEEeecC-----------Cceeehhhccchheeecccccc
Confidence 9999995 9999999999877 999999999999999997 7999999999999999988885
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-14 Score=143.36 Aligned_cols=262 Identities=13% Similarity=0.162 Sum_probs=183.3
Q ss_pred cccccccCCCCcccccccccccccceEEEEEe--cCEEEEEeCC--------CeEEeeecccC---------cEEEEeec
Q 011452 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQS--------GVCAAFCRETN---------QRICFLNV 133 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias~s~d--------gtiklW~~~tG---------~~l~tl~g 133 (485)
|...--+++........-|+-+-+.|+.|+.+ .+.|++.... --+.+|.+... ++++.|..
T Consensus 41 qVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldt 120 (370)
T KOG1007|consen 41 QVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDT 120 (370)
T ss_pred eeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCH
Confidence 33344455655555555566677889999988 5555544433 34678987632 24555654
Q ss_pred CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecccc---CceEEEEeC-CCCeEEE
Q 011452 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK---WPGFVEFDD-VNGKVLT 209 (485)
Q Consensus 134 ~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~---~~~~V~Fs~-pnG~~La 209 (485)
.+-+.|.+|-|.||++.||+.- + ..+-+|++..+.-..+ .+...++.. +-.+-+++| .||..++
T Consensus 121 eavg~i~cvew~Pns~klasm~----d-------n~i~l~~l~ess~~va-ev~ss~s~e~~~~ftsg~WspHHdgnqv~ 188 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD----D-------NNIVLWSLDESSKIVA-EVLSSESAEMRHSFTSGAWSPHHDGNQVA 188 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec----c-------CceEEEEcccCcchhe-eecccccccccceecccccCCCCccceEE
Confidence 4455799999999999998843 3 4888999876654211 111111111 111335664 5788877
Q ss_pred EeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEE
Q 011452 210 YSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~ 284 (485)
+. .|+|++.||+.+-++.+.+. ++.|.++.|.|+ +.+++++ ++|+.|||||... -..++++.+|.|++|.|.
T Consensus 189 tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~--gDdgyvriWD~R~tk~pv~el~~HsHWvW~VR 265 (370)
T KOG1007|consen 189 TT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTC--GDDGYVRIWDTRKTKFPVQELPGHSHWVWAVR 265 (370)
T ss_pred Ee-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEc--CCCccEEEEeccCCCccccccCCCceEEEEEE
Confidence 65 49999999999988888885 567999999984 3444443 4569999999763 456899999999999999
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCe-----------------------------eEEecccCCCceEEEEEcC-CCcE
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFE-----------------------------LTEVSRTEFMTPSAFIFLY-ENQL 334 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~-----------------------------~~~~l~gh~~~v~avaFsp-dg~l 334 (485)
|.+..++.+|++|.|..|-||...+-. .++++..|.+.|++++||. |==+
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWi 345 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWI 345 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCee
Confidence 998778888999999999999755311 2456677999999999864 5556
Q ss_pred EEEEe-CCcEEEEeCC
Q 011452 335 FLTFR-NRTVAVWNFR 349 (485)
Q Consensus 335 laS~s-D~TIklWd~~ 349 (485)
|||-| ||-+-|=.+.
T Consensus 346 FASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 346 FASLSYDGRVIISSVP 361 (370)
T ss_pred EEEeccCceEEeecCC
Confidence 77778 8877665553
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-15 Score=168.50 Aligned_cols=240 Identities=10% Similarity=0.102 Sum_probs=186.5
Q ss_pred ccceEEEEEe--cC----EEEEEeCCCeEEeeeccc---Cc---EEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCC
Q 011452 95 RSKIIEIVAA--RD----IVFALAQSGVCAAFCRET---NQ---RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDN 161 (485)
Q Consensus 95 ~s~V~~i~~s--~~----~ias~s~dgtiklW~~~t---G~---~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d 161 (485)
.++-.+++.. ++ +||.|.+||.|-|||... |+ .|.+... |.+.|+.|.|||... .||+++ ++
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa----~~ 138 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGA----DD 138 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccC----CC
Confidence 3344667776 44 499999999999999664 32 4556666 888999999999976 888744 45
Q ss_pred CcccceeEEEEeEeccCCcCcccceeeec---cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----C
Q 011452 162 FSSLRCRSTRIEYIRRGKPDAGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K 234 (485)
Q Consensus 162 ~stL~~~t~~lw~i~~G~~~~~~~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~ 234 (485)
..|-|||+..=+. =|... ...-|.+|++.-....+|||++.++.+-||||+..+.+..+.. -
T Consensus 139 ------geI~iWDlnn~~t-----P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~ 207 (1049)
T KOG0307|consen 139 ------GEILIWDLNKPET-----PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM 207 (1049)
T ss_pred ------CcEEEeccCCcCC-----CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCcc
Confidence 6999999854221 12111 1223446777655678899999999999999998776666642 2
Q ss_pred cEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 235 NVQEIKISPG--IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 235 ~V~~VafSpg--~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
.+..|+|+|+ -.+++++.++..-.|++||+.. -..+++|++|+..+-+++|...|+..||+++.|+.|-+||..|||
T Consensus 208 ~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 208 HCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred ceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 4889999983 2444444555668999999653 347899999999999999998888899999999999999999999
Q ss_pred eEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRG 350 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~G 350 (485)
.+-.+....+|+..|-|.|..- +|+.++ ||.|.|+.++|
T Consensus 288 vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 288 VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 9999988889999999999888 777888 99999999964
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=169.15 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=199.4
Q ss_pred cCEEEEEeCCCeEEeeecc--cCc----EEEEeecCCcccEEEEEEeeCCCE---EEEEEeecCCCCcccceeEEEEeEe
Q 011452 105 RDIVFALAQSGVCAAFCRE--TNQ----RICFLNVTADEVIRSLFYNKNNDS---LITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~--tG~----~l~tl~g~~~~~i~sv~~spdg~~---Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+++=++-|.+.+..||.+. .+. ....+. .++..+.|+|.+.|.- ||.+ |.+| +.|-||+.
T Consensus 29 q~~D~sfst~~slEifeld~~~~~~dlk~~~s~~--s~~rF~kL~W~~~g~~~~GlIaG---G~ed------G~I~ly~p 97 (1049)
T KOG0307|consen 29 QQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ--SSNRFNKLAWGSYGSHSHGLIAG---GLED------GNIVLYDP 97 (1049)
T ss_pred hccccccccccccceeeecccCcccccccccccc--ccccceeeeecccCCCccceeec---cccC------CceEEecc
Confidence 3333444556666666543 122 222232 3456889999999987 3332 3466 79999996
Q ss_pred ccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----CCcEEEEEEc-CCceEE
Q 011452 176 RRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKIS-PGIMLL 248 (485)
Q Consensus 176 ~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~~~V~~VafS-pg~~ll 248 (485)
..=.-+....+..+ .|-++|..++|++-.+.+||||+.||.|-|||+++-+.-++.. ...|.+|++. --+.++
T Consensus 98 ~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhIL 177 (1049)
T KOG0307|consen 98 ASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHIL 177 (1049)
T ss_pred hhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHh
Confidence 32101111222222 3667788899986556699999999999999999866545542 3689999999 444555
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcc--eeEEEEEecCCCEEEEEeCC---CcEEEEECCC-CeeEEecccCCCc
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHR--NKKVDFIEQFNEKLLVKQEN---ENLQILDVRN-FELTEVSRTEFMT 322 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~--~~~V~f~~~~~~~lls~s~D---~tIkIWDv~t-g~~~~~l~gh~~~ 322 (485)
++++ .++++-|||+..-+.+-.|..|..+ +..|+|.+..-.+|+++++| -.|++||++. ...++++++|+..
T Consensus 178 AS~s--~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G 255 (1049)
T KOG0307|consen 178 ASGS--PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG 255 (1049)
T ss_pred hccC--CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc
Confidence 4433 3478999999988888788766553 45899985545566666533 6899999996 4568889999999
Q ss_pred eEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCC
Q 011452 323 PSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 323 v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~Dg 398 (485)
|.++.|.+.. .+|+|++ |+.|-+||.+ ||.|..|-....| +..|.|.|--- .++.++. ||
T Consensus 256 ilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-----~fdv~w~pr~P~~~A~asf-----------dg 319 (1049)
T KOG0307|consen 256 ILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-----CFDVQWCPRNPSVMAAASF-----------DG 319 (1049)
T ss_pred eeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcc-----eeeeeecCCCcchhhhhee-----------cc
Confidence 9999999877 8899998 9999999996 9999999998899 88999999654 7777777 79
Q ss_pred eEEEEeCCCC
Q 011452 399 SINISNILTG 408 (485)
Q Consensus 399 tIklWdl~TG 408 (485)
.|-|..+.++
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999998754
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-15 Score=165.51 Aligned_cols=277 Identities=13% Similarity=0.095 Sum_probs=200.6
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
-|-|++.|+.++|. |-+|++||.|..+|+|..+++.|+.++.| |..-|+.++-|.++-++|++| .| .
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rG-hs~ditdlavs~~n~~iaaaS----~D------~ 254 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRG-HSGDITDLAVSSNNTMIAAAS----ND------K 254 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCC-Cccccchhccchhhhhhhhcc----cC------c
Confidence 35689999999998 99999999999999999999999999988 888999999999999998877 45 6
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE---E---cCCcEEEEEEc
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS---I---SDKNVQEIKIS 242 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t---l---~~~~V~~VafS 242 (485)
.|++|-+++|.+.. .|++ +.+.+.+++|+| - ++++.|+|+++||..=--.+|. + .+..|-++-|.
T Consensus 255 vIrvWrl~~~~pvs--vLrg--htgavtaiafsP-~----~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~ 325 (1113)
T KOG0644|consen 255 VIRVWRLPDGAPVS--VLRG--HTGAVTAIAFSP-R----ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFE 325 (1113)
T ss_pred eEEEEecCCCchHH--HHhc--cccceeeeccCc-c----ccCCCCCceEeccccccccccCCCCCCcccccceeeeecc
Confidence 89999999999843 3444 457778999984 3 3778999999999761111222 0 12457777777
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT 322 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~ 322 (485)
..++-..+.+ .|.+.+.|.++- +..+.....=|.++...+...+++=.+.-+.+|++-+|.+.+.+.+|.+.
T Consensus 326 ~~~~~f~Tgs--~d~ea~n~e~~~------l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 326 NNGDRFLTGS--RDGEARNHEFEQ------LAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred cccccccccc--CCcccccchhhH------hhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 6444433433 346777776532 11111111122222211234445568899999999999999999999999
Q ss_pred eEEEEEcCCCcEEE-EEe-CCcEEEEeC-CCcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 323 PSAFIFLYENQLFL-TFR-NRTVAVWNF-RGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 323 v~avaFspdg~lla-S~s-D~TIklWd~-~G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
++.+-|.|-+..++ +++ ||.+-|||+ +|-.++ -+.+|.. +..-.||+||+.++... | -|
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k------l~d~kFSqdgts~~lsd-----~------hg 460 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK------LVDGKFSQDGTSIALSD-----D------HG 460 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce------eeccccCCCCceEecCC-----C------CC
Confidence 99999999877766 556 999999999 477544 3466643 56788999999988642 2 47
Q ss_pred eEEEEeCCCCeEEE
Q 011452 399 SINISNILTGKCLA 412 (485)
Q Consensus 399 tIklWdl~TGk~l~ 412 (485)
-+.|...-.|+...
T Consensus 461 ql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 461 QLYILGTGQSKSQK 474 (1113)
T ss_pred ceEEeccCCCcccc
Confidence 77776644444433
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-15 Score=167.17 Aligned_cols=228 Identities=15% Similarity=0.196 Sum_probs=171.6
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
|+..+.++.|| ..|.++.+|+.|..||||..+++.|+.+..++ .|..+|.+-...+.+++ +.|.-|++|-+.+|.
T Consensus 189 H~naVyca~fD-rtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa--S~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 189 HRNAVYCAIFD-RTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA--SNDKVIRVWRLPDGA 265 (1113)
T ss_pred hhhheeeeeec-cccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc--ccCceEEEEecCCCc
Confidence 56667788997 79999999999999999999999999999764 79999999655554443 466899999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe---------------------------------
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--------------------------------- 315 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--------------------------------- 315 (485)
++..|.||++.|.+++|+|. .++|.|+|+++||.+ -+.+..
T Consensus 266 pvsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~e 339 (1113)
T KOG0644|consen 266 PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGE 339 (1113)
T ss_pred hHHHHhccccceeeeccCcc-----ccCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcc
Confidence 99999999999999999852 377899999999988 111110
Q ss_pred --------cccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEE-EE
Q 011452 316 --------SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLII-SY 383 (485)
Q Consensus 316 --------l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~La-S~ 383 (485)
+..|...+.-+.++.|- -..+++. +--+++||+ +|.+++.+.+|... +.-+.|.|=.-.|+ |+
T Consensus 340 a~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~-----~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 340 ARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE-----VYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc-----eeeeeecCCCcHhhhhc
Confidence 01111111111122111 3445555 677899999 59999999999987 88999999665555 44
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
+ .||++-|||+-.|--++.. .+|. .+..-
T Consensus 415 g-----------~dgst~iwdi~eg~pik~y~~gh~---------------------------------------kl~d~ 444 (1113)
T KOG0644|consen 415 G-----------YDGSTIIWDIWEGIPIKHYFIGHG---------------------------------------KLVDG 444 (1113)
T ss_pred c-----------CCCceEeeecccCCcceeeecccc---------------------------------------eeecc
Confidence 4 4899999999888766543 4453 44457
Q ss_pred EEcCCCCEEEEecCCCcEEE
Q 011452 463 FYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVkl 482 (485)
.||+||+.++-....|.+.+
T Consensus 445 kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 445 KFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred ccCCCCceEecCCCCCceEE
Confidence 89999999988877777655
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-14 Score=134.05 Aligned_cols=129 Identities=13% Similarity=0.191 Sum_probs=100.2
Q ss_pred cEEEEECCC-CeeEEec-ccCCCceEEEEEcCCCcEEEEE--e-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 301 NLQILDVRN-FELTEVS-RTEFMTPSAFIFLYENQLFLTF--R-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 301 tIkIWDv~t-g~~~~~l-~gh~~~v~avaFspdg~llaS~--s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
...|+-++. +.....+ ..+...|.+++|+|+|+.||.. . +++|.|||++++.+.+|..+. ++.|.|||
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~-------~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQP-------RNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCC-------ceEEEECC
Confidence 355555532 2223333 2234469999999999997654 4 789999999999999996543 78999999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+|++||.++. +...|.|.+||+.+.+++.++. |.
T Consensus 111 ~G~~l~~~g~--------~n~~G~l~~wd~~~~~~i~~~~-~~------------------------------------- 144 (194)
T PF08662_consen 111 DGRFLVLAGF--------GNLNGDLEFWDVRKKKKISTFE-HS------------------------------------- 144 (194)
T ss_pred CCCEEEEEEc--------cCCCcEEEEEECCCCEEeeccc-cC-------------------------------------
Confidence 9999999986 2235889999999999998874 32
Q ss_pred cCCeEEEEEcCCCCEEEEecC------CCcEEEcc
Q 011452 456 LEDITALFYDEDRNEIYTGNR------HGLVHVWS 484 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~------DgtVklWd 484 (485)
.++.++|||||+.|+|+.. |+.++||+
T Consensus 145 --~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 145 --DATDVEWSPDGRYLATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred --cEEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence 5678999999999999974 89999997
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-13 Score=142.44 Aligned_cols=222 Identities=9% Similarity=0.097 Sum_probs=148.4
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.+||.+ |.....+.. +...+.+..|||||+.|+.++.... + .++.+|++..|+.. .+... .+.+
T Consensus 183 ~l~~~d~d-g~~~~~lt~-~~~~v~~p~wSpDG~~lay~s~~~g-~------~~i~~~dl~~g~~~---~l~~~--~g~~ 248 (435)
T PRK05137 183 RLAIMDQD-GANVRYLTD-GSSLVLTPRFSPNRQEITYMSYANG-R------PRVYLLDLETGQRE---LVGNF--PGMT 248 (435)
T ss_pred EEEEECCC-CCCcEEEec-CCCCeEeeEECCCCCEEEEEEecCC-C------CEEEEEECCCCcEE---EeecC--CCcc
Confidence 67788876 666666765 6678999999999999999885432 3 58899999888752 22211 2233
Q ss_pred eEEEEeCCCCeEEE-EeeCCCc--EEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKVLT-YSAQDSI--YKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~La-s~s~D~t--iKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~ 269 (485)
...+|+ |||+.|+ +.+.|+. |.+||++++++.. +. ...+.+.+|||++..++..+ .+....|.+||+.+|+.
T Consensus 249 ~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 249 FAPRFS-PDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred cCcEEC-CCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 467898 7998776 4455655 6667888877543 43 23467799998666444444 33345788999877655
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC----
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---- 341 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~---D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---- 341 (485)
+.+..+...+....|+ |++++|+..+. +..|.+||+.++.......+ ..+....|+|||+.|+-.+ ++
T Consensus 327 -~~lt~~~~~~~~~~~S-pdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 327 -RRISFGGGRYSTPVWS-PRGDLIAFTKQGGGQFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred -EEeecCCCcccCeEEC-CCCCEEEEEEcCCCceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 4444333455667786 78888888653 24788899876654333222 2467789999999987655 22
Q ss_pred --cEEEEeCCCcEEEEee
Q 011452 342 --TVAVWNFRGELVTSFE 357 (485)
Q Consensus 342 --TIklWd~~G~ll~tl~ 357 (485)
.+.+.|++|...+.+.
T Consensus 403 ~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 403 APKLYTVDLTGRNEREVP 420 (435)
T ss_pred cceEEEEECCCCceEEcc
Confidence 4566677766555554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.3e-13 Score=137.87 Aligned_cols=227 Identities=17% Similarity=0.239 Sum_probs=174.6
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
+..|. .+...|+-|+.|| +|++....-...+... +..|-+.-||..-..+++. +.-..+|+.++..+..+=.+.
T Consensus 10 ~~~~N-qd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~--~qpr~Lkv~~~Kk~~~ICe~~ 85 (391)
T KOG2110|consen 10 FIGFN-QDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSI--KQPRKLKVVHFKKKTTICEIF 85 (391)
T ss_pred eeeec-cceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeecccceeEEEec--CCCceEEEEEcccCceEEEEe
Confidence 45575 6888888888887 7899887544433322 3468888999765555543 211559999988777664443
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---CCCceEEEEEcCCCcEEEEEe---CCcEEEEeC
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---EFMTPSAFIFLYENQLFLTFR---NRTVAVWNF 348 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---h~~~v~avaFspdg~llaS~s---D~TIklWd~ 348 (485)
. .+.+-+|.+.. ++|++.=++. |-|+|+++=++++++.. |...+-|+.+++++-+||-=+ -|.|.|||+
T Consensus 86 f-pt~IL~VrmNr---~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 86 F-PTSILAVRMNR---KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT 160 (391)
T ss_pred c-CCceEEEEEcc---ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence 2 25777888752 5666664433 99999999999888743 555677777777888888432 789999999
Q ss_pred C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 349 ~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
. -+.+.+++.|... +-.++|+|||.+||++|. .|| ||++.+.+|+.+..|+--.-
T Consensus 161 ~nl~~v~~I~aH~~~-----lAalafs~~G~llATASe-----------KGTVIRVf~v~~G~kl~eFRRG~~------- 217 (391)
T KOG2110|consen 161 INLQPVNTINAHKGP-----LAALAFSPDGTLLATASE-----------KGTVIRVFSVPEGQKLYEFRRGTY------- 217 (391)
T ss_pred ccceeeeEEEecCCc-----eeEEEECCCCCEEEEecc-----------CceEEEEEEcCCccEeeeeeCCce-------
Confidence 5 8899999999987 999999999999999997 576 79999999999999976431
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
| -.|.+|+|+||+++|+..|.-+||||..
T Consensus 218 ----------~-------------------~~IySL~Fs~ds~~L~~sS~TeTVHiFK 246 (391)
T KOG2110|consen 218 ----------P-------------------VSIYSLSFSPDSQFLAASSNTETVHIFK 246 (391)
T ss_pred ----------e-------------------eEEEEEEECCCCCeEEEecCCCeEEEEE
Confidence 1 2899999999999999999999999975
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-13 Score=144.79 Aligned_cols=207 Identities=13% Similarity=0.098 Sum_probs=136.5
Q ss_pred CcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcC-CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 215 SIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKA-SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~-~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
..+.+||.. |.....+ +...|.+.+|||++..+++.+. +....|.+||+.+|+... +....+.+..++|+ ||+.
T Consensus 176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~S-PDG~ 252 (427)
T PRK02889 176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWS-PDGR 252 (427)
T ss_pred cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEEC-CCCC
Confidence 356666663 4433333 3467899999997765555443 333579999999997643 33222455678886 7888
Q ss_pred EEEEE-eCCCcEEEEE--CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeC--CCcEEEEeecCCCCCC
Q 011452 292 KLLVK-QENENLQILD--VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s~D~tIkIWD--v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~--~G~ll~tl~gH~~~~~ 364 (485)
+|+.. +.|+..+||. +.+++. +.+..|........|+|||+.|+..+ ++...||.+ .+.....+..+...
T Consensus 253 ~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~-- 329 (427)
T PRK02889 253 TLAVALSRDGNSQIYTVNADGSGL-RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSY-- 329 (427)
T ss_pred EEEEEEccCCCceEEEEECCCCCc-EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCC--
Confidence 88764 6888877775 555554 44555555567788999999888666 567888876 44333333222222
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
..+.+|||||++|+..+.. +.+..|.+||+.+|+.. .+..+.
T Consensus 330 ---~~~~~~SpDG~~Ia~~s~~--------~g~~~I~v~d~~~g~~~-~lt~~~-------------------------- 371 (427)
T PRK02889 330 ---NTSPRISPDGKLLAYISRV--------GGAFKLYVQDLATGQVT-ALTDTT-------------------------- 371 (427)
T ss_pred ---cCceEECCCCCEEEEEEcc--------CCcEEEEEEECCCCCeE-EccCCC--------------------------
Confidence 3467899999999977651 12247999999988754 443321
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
...++.|+|||+.|+.++.++
T Consensus 372 -------------~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 372 -------------RDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -------------CccCceECCCCCEEEEEEecC
Confidence 234579999999988877554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=148.73 Aligned_cols=269 Identities=11% Similarity=0.110 Sum_probs=201.3
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
.|.+|+|. |..|+-++ +..+-++|...|.++.+|.+ |.+.|++|+|+.||+..||+++ | +.+-||.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKg-HKDtVycVAys~dGkrFASG~a----D------K~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKG-HKDTVYCVAYAKDGKRFASGSA----D------KSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCccccccccc-ccceEEEEEEccCCceeccCCC----c------eeEEEec
Confidence 46677777 44443333 34677999999999999998 8889999999999999998664 4 5888998
Q ss_pred ec-cCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcC
Q 011452 175 IR-RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 175 i~-~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~ 253 (485)
-+ .|- ..-.|...+-...|. |=.+.|||+|- +..-+|..+.......-....|.+.++..+|++++-+-
T Consensus 82 ~klEG~-------LkYSH~D~IQCMsFN-P~~h~LasCsL-sdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~- 151 (1081)
T KOG1538|consen 82 SKLEGI-------LKYSHNDAIQCMSFN-PITHQLASCSL-SDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGM- 151 (1081)
T ss_pred ccccce-------eeeccCCeeeEeecC-chHHHhhhcch-hhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEec-
Confidence 52 222 222244556678997 56678898874 35668876543222111235788899996555555443
Q ss_pred CCCeeEEEEecCCCeEEEEee---cCCcceeEEEEEecCC----CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFN---HLLHRNKKVDFIEQFN----EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~---~~~~~~~~V~f~~~~~----~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~av 326 (485)
.++||.|=+ .+|++--.+. |....+++|+|+|..+ +.+++.-+..|+-.+.+. |+.+.--+.-...+-++
T Consensus 152 -~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~Ci 228 (1081)
T KOG1538|consen 152 -FNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCI 228 (1081)
T ss_pred -cCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhh
Confidence 347888877 4777655554 4566789999986443 577888899999999987 66666444445567788
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.+-|+|.+++-|+ |+.++++.-+|-++-|+-....| ||+|+..|++|+.+.||. ||||--+|+
T Consensus 229 sYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~~D~W-----IWtV~~~PNsQ~v~~GCq-----------DGTiACyNl 292 (1081)
T KOG1538|consen 229 SYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGEQDSW-----IWTVQAKPNSQYVVVGCQ-----------DGTIACYNL 292 (1081)
T ss_pred eeccCCcEEEEccCCCceEEEeecCeEEeecccccee-----EEEEEEccCCceEEEEEc-----------cCeeehhhh
Confidence 8899999999988 99999999999999999888889 999999999999999998 799988887
Q ss_pred C
Q 011452 406 L 406 (485)
Q Consensus 406 ~ 406 (485)
.
T Consensus 293 ~ 293 (1081)
T KOG1538|consen 293 I 293 (1081)
T ss_pred H
Confidence 4
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=139.90 Aligned_cols=280 Identities=14% Similarity=0.165 Sum_probs=191.4
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee--CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
...+|++...|++||+|..||+.+..+.+ +...++-+.|.. -.+.++++|.| ++|++||+|.-+-.
T Consensus 40 e~~vav~lSngsv~lyd~~tg~~l~~fk~-~~~~~N~vrf~~~ds~h~v~s~ssD----------G~Vr~wD~Rs~~e~- 107 (376)
T KOG1188|consen 40 ETAVAVSLSNGSVRLYDKGTGQLLEEFKG-PPATTNGVRFISCDSPHGVISCSSD----------GTVRLWDIRSQAES- 107 (376)
T ss_pred ceeEEEEecCCeEEEEeccchhhhheecC-CCCcccceEEecCCCCCeeEEeccC----------CeEEEEEeecchhh-
Confidence 35688899999999999999999998887 555788898866 46677887743 49999999765542
Q ss_pred ccceeeeccccCceEEEEeCC-CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 183 GFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~p-nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
++..|+..+ + -.+..|+-. ++++++.|.. + ...|-.|-+
T Consensus 108 a~~~~~~~~-~-~~f~~ld~nck~~ii~~GtE----------------------------------~----~~s~A~v~l 147 (376)
T KOG1188|consen 108 ARISWTQQS-G-TPFICLDLNCKKNIIACGTE----------------------------------L----TRSDASVVL 147 (376)
T ss_pred hheeccCCC-C-CcceEeeccCcCCeEEeccc----------------------------------c----ccCceEEEE
Confidence 233455422 1 136777632 5667776631 0 011235666
Q ss_pred EecCCCeE-EEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe----eEEecccCCCceEEEEEcCCC-cE
Q 011452 262 LSIEDGTV-LKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYEN-QL 334 (485)
Q Consensus 262 Wdi~tG~~-L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspdg-~l 334 (485)
||+..-+. +..+. .|..-|..|.|.|.++..||+||-||-|.|+|+..-. ++.++ .|...|-.+.|+-++ +.
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykr 226 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKR 226 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcce
Confidence 76655444 44443 6778889999999999999999999999999998643 33444 356678899999888 23
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCC-----CC--CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLL-----WH--PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~-----~~--~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+-.-+ ..|.++|+++ |.++..|+.-.. +. ...++-+..-..++++.+.+..+ -|+..+.=+
T Consensus 227 I~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~----------~n~~~~~~~ 296 (376)
T KOG1188|consen 227 IMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD----------SNKGTIFPL 296 (376)
T ss_pred EEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc----------cCceeEEEe
Confidence 44556 9999999996 888877764421 00 00113333334566777666541 234333322
Q ss_pred ---C---CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 406 ---L---TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 406 ---~---TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
. +++.++.|.||.. +-|+++.|.-.+..|+||++||.
T Consensus 297 ~~~~s~~~~~~~a~l~g~~~-------------------------------------eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGHE-------------------------------------EIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred eecccccccCccccccCCcH-------------------------------------HHHHHHhhhcccceeeccCCCce
Confidence 2 3556677777541 38899999999999999999999
Q ss_pred EEEcc
Q 011452 480 VHVWS 484 (485)
Q Consensus 480 VklWd 484 (485)
+.+|.
T Consensus 340 l~~Wk 344 (376)
T KOG1188|consen 340 LQAWK 344 (376)
T ss_pred EEEEe
Confidence 99996
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-13 Score=141.61 Aligned_cols=246 Identities=13% Similarity=0.072 Sum_probs=156.9
Q ss_pred EecCEEEEEeCCC--eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 103 AARDIVFALAQSG--VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 103 ~s~~~ias~s~dg--tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
|++.+.+.....+ .+.+||.+ |...+.+.. +.+.+.+.+|||||+.|+.++... .. ..+.+|++..|+.
T Consensus 162 f~~~iayv~~~~~~~~L~~~D~d-G~~~~~l~~-~~~~v~~p~wSPDG~~la~~s~~~-~~------~~I~~~dl~~g~~ 232 (427)
T PRK02889 162 FSTRIAYVIKTGNRYQLQISDAD-GQNAQSALS-SPEPIISPAWSPDGTKLAYVSFES-KK------PVVYVHDLATGRR 232 (427)
T ss_pred cccEEEEEEccCCccEEEEECCC-CCCceEecc-CCCCcccceEcCCCCEEEEEEccC-CC------cEEEEEECCCCCE
Confidence 4455555443333 45566654 766666655 566899999999999999877432 22 4688999988875
Q ss_pred CcccceeeeccccCceEEEEeCCCCeEEEE-eeCCCcEEEeec--CCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCC
Q 011452 181 DAGFALFESESLKWPGFVEFDDVNGKVLTY-SAQDSIYKVFDL--KNYTMLYSISD--KNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las-~s~D~tiKlWdl--~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~ 255 (485)
. .+... .+.....+|+ |||+.|+. .+.|+...||.+ .++. +..+.. ..+.+..|||++..++..+. .
T Consensus 233 ~---~l~~~--~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~-~ 304 (427)
T PRK02889 233 R---VVANF--KGSNSAPAWS-PDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD-R 304 (427)
T ss_pred E---EeecC--CCCccceEEC-CCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec-C
Confidence 2 22211 1344578998 79988874 577888787765 4444 444432 34567899997765555443 2
Q ss_pred CeeEEEE--ecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEeCC---CcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 256 HVPLKIL--SIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQEN---ENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 256 D~tIklW--di~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s~D---~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
++...|| ++.+|+... ++.+ ......+|+ |+|..|+..+.+ ..|.+||+.+++......++ ......|+
T Consensus 305 ~g~~~Iy~~~~~~g~~~~lt~~g--~~~~~~~~S-pDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~s 379 (427)
T PRK02889 305 GGAPQIYRMPASGGAAQRVTFTG--SYNTSPRIS-PDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSFA 379 (427)
T ss_pred CCCcEEEEEECCCCceEEEecCC--CCcCceEEC-CCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceEC
Confidence 2345555 555665432 3332 334467786 788888876533 37999999998876554332 34678999
Q ss_pred CCCcEEEEEe-CC-c--EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 330 YENQLFLTFR-NR-T--VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 330 pdg~llaS~s-D~-T--IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
|||+.|+.++ ++ . +.+-+.+|+..+.+..+..- +...++||
T Consensus 380 pdg~~l~~~~~~~g~~~l~~~~~~g~~~~~l~~~~g~-----~~~p~wsp 424 (427)
T PRK02889 380 PNGRYILYATQQGGRSVLAAVSSDGRIKQRLSVQGGD-----VREPSWGP 424 (427)
T ss_pred CCCCEEEEEEecCCCEEEEEEECCCCceEEeecCCCC-----CCCCccCC
Confidence 9999998887 33 3 33334568877777655433 55666666
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=147.55 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=128.6
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe---------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE---------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
..+.++.|...+.++|++++.|..||||-+..++ .+.+|..|...|+.|-|+|+|.+||||+ +++|-||-
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3567888865444588899999999999887543 4556889999999999999999999999 99999997
Q ss_pred CC--------C---------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 348 FR--------G---------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 348 ~~--------G---------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.. + .....+.+|..- +..++++||+.+|+++|. |+++++||+..|+.
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~d-----iydL~Ws~d~~~l~s~s~-----------dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDD-----IYDLAWSPDSNFLVSGSV-----------DNSVRLWDVHAGQL 157 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccc-----hhhhhccCCCceeeeeec-----------cceEEEEEecccee
Confidence 54 3 134578888866 899999999999999998 79999999999999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
++.+-+|.+ .|..++++|-.+.++|=|.|...+.
T Consensus 158 ~~~~~dh~~--------------------------------------yvqgvawDpl~qyv~s~s~dr~~~~ 191 (434)
T KOG1009|consen 158 LAILDDHEH--------------------------------------YVQGVAWDPLNQYVASKSSDRHPEG 191 (434)
T ss_pred Eeecccccc--------------------------------------ccceeecchhhhhhhhhccCcccce
Confidence 999999973 7889999999999999998874443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=134.82 Aligned_cols=286 Identities=15% Similarity=0.175 Sum_probs=203.5
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe------ccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI------RRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i------~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
+.+ |.+.|+.|-||-||+.||+ |+|| +.+++|.+ +..|+ +.+.++-|..-+.+++|+ ..
T Consensus 52 ~~~-H~GCiNAlqFS~N~~~L~S----GGDD------~~~~~W~~de~~~~k~~KP---I~~~~~~H~SNIF~L~F~-~~ 116 (609)
T KOG4227|consen 52 VRE-HTGCINALQFSHNDRFLAS----GGDD------MHGRVWNVDELMVRKTPKP---IGVMEHPHRSNIFSLEFD-LE 116 (609)
T ss_pred hhh-hccccceeeeccCCeEEee----cCCc------ceeeeechHHHHhhcCCCC---ceeccCccccceEEEEEc-cC
Confidence 444 8889999999999999988 5688 89999987 33344 335555454557889998 46
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe-E--EEEeecC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT-V--LKSFNHL 276 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~-~--L~tl~~~ 276 (485)
...|-||..|++|-+-|+++.+-++.+.. ..|..+..+| +..+++++ .++-|-+||+...+ . +.-+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCC
Confidence 67788999999999999999999998852 3799999998 77776653 34899999998655 1 1222211
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee--E-----EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL--T-----EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~--~-----~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
...-..+-|.|..+-.||+.++-+-+-+||++.... + .-|..+...-..+.|+|.|..|++-. -.---++|+
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred CccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 123348889866566777788999999999985431 1 11111111123567999999999988 555568899
Q ss_pred CC-cEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-----C------------
Q 011452 349 RG-ELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-----G------------ 408 (485)
Q Consensus 349 ~G-~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-----G------------ 408 (485)
.- .|-.--.+|. .+...|.+.+.+|--|-. |+|||. +=-|.||.|-- |
T Consensus 274 ~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD-----------~~~i~~WklP~~~ds~G~~~IG~~~~~~~ 341 (609)
T KOG4227|consen 274 ISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSD-----------HWGIHIWKLPRANDSYGFTQIGHDEEEMP 341 (609)
T ss_pred ecccceeEeccCCCCcceeeeeeeeeeeeccee-eeccCc-----------ccceEEEecCCCccccCccccCcchhhCc
Confidence 63 4433223443 344446677888876654 888885 57799998742 1
Q ss_pred ------eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 409 ------KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 409 ------k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+.+..|+||.. -|..|-|+|-...|+|.+..+.+||
T Consensus 342 ~~~~i~~~~~VLrGHRS--------------------------------------v~NQVRF~~H~~~l~SSGVE~~~Kl 383 (609)
T KOG4227|consen 342 SEIFIEKELTVLRGHRS--------------------------------------VPNQVRFSQHNNLLVSSGVENSFKL 383 (609)
T ss_pred hhheecceeEEEecccc--------------------------------------cccceeecCCcceEeccchhhheec
Confidence 23445566641 6778999999999999999999999
Q ss_pred cc
Q 011452 483 WS 484 (485)
Q Consensus 483 Wd 484 (485)
|.
T Consensus 384 WS 385 (609)
T KOG4227|consen 384 WS 385 (609)
T ss_pred cc
Confidence 96
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-11 Score=128.43 Aligned_cols=306 Identities=15% Similarity=0.141 Sum_probs=190.8
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
+++...++.+.+.|.+|.+.+.++..+.+ .--++.|+|||+++.+++. + ..+.++|+.+++..+. .
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~-~h~~~~~s~Dgr~~yv~~r---d-------g~vsviD~~~~~~v~~---i 74 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGA-PHAGLKFSPDGRYLYVANR---D-------GTVSVIDLATGKVVAT---I 74 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STT-EEEEEE-TT-SSEEEEEET---T-------SEEEEEETTSSSEEEE---E
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCC-ceeEEEecCCCCEEEEEcC---C-------CeEEEEECCcccEEEE---E
Confidence 35677899999999999999999976433 4466889999999888764 3 3788999999987331 2
Q ss_pred eeccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCce-EEEEEcCCCC
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPGIM-LLIFTKASGH 256 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg~~-ll~sss~~~D 256 (485)
.. -..+..+++| +||++|+.+. .++++.|+|.++.+.++++.. ..|.+|..+|+.. ++++-.+.
T Consensus 75 ~~--G~~~~~i~~s-~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~-- 149 (369)
T PF02239_consen 75 KV--GGNPRGIAVS-PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT-- 149 (369)
T ss_dssp E---SSEEEEEEE---TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT--
T ss_pred ec--CCCcceEEEc-CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC--
Confidence 22 2346689998 7999887654 689999999999999998853 2578888898655 44443322
Q ss_pred eeEEEEecCCCeEEE--EeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc----cCCCceEEEE--
Q 011452 257 VPLKILSIEDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR----TEFMTPSAFI-- 327 (485)
Q Consensus 257 ~tIklWdi~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~----gh~~~v~ava-- 327 (485)
..|-+-|..+.+.+. .+. ....-....|. |++.+++++ ..+..|-++|.++++....+. .|......+-
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~-~g~~~~D~~~d-pdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php 227 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIK-VGRFPHDGGFD-PDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHP 227 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE---TTEEEEEE--TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEET
T ss_pred CeEEEEEeccccccceeeec-ccccccccccC-cccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCC
Confidence 355555776665443 332 11222355664 777888776 477799999999998766542 2332222221
Q ss_pred -------EcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 328 -------FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 328 -------Fspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
..-.+...++.- ...+.+||.. .+.+++++..... .-+.-+||+++|.....- ....+
T Consensus 228 ~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g------lFi~thP~s~~vwvd~~~-------~~~~~ 294 (369)
T PF02239_consen 228 GFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG------LFIKTHPDSRYVWVDTFL-------NPDAD 294 (369)
T ss_dssp TTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--------EE--TT-SEEEEE-TT--------SSHT
T ss_pred CcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc------ceeecCCCCccEEeeccC-------CCCCc
Confidence 122333333443 5577789986 9999999865432 467789999999987210 11258
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 399 SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
+|-++|.+|-+.+.+|....+ ..+.-+.|+|||++++-..+|+
T Consensus 295 ~v~viD~~tl~~~~~i~~~~~-------------------------------------~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 295 TVQVIDKKTLKVVKTITPGPG-------------------------------------KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp -EEEEECCGTEEEE-HHHHHT---------------------------------------EEEEEE-TTSSEEEEEEE--
T ss_pred eEEEEECcCcceeEEEeccCC-------------------------------------CcEeccEECCCCCEEEEEEecC
Confidence 999999999988888864331 1477899999999877766544
Q ss_pred --cEEEcc
Q 011452 479 --LVHVWS 484 (485)
Q Consensus 479 --tVklWd 484 (485)
.|.++|
T Consensus 338 ~~~i~v~D 345 (369)
T PF02239_consen 338 NGAIVVYD 345 (369)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 588876
|
... |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-12 Score=132.71 Aligned_cols=235 Identities=10% Similarity=0.078 Sum_probs=151.4
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.++|.+ |.....+.. +.+.+.+..|||||+.|+.++... .. ..+.++++..|+. ..+... .+..
T Consensus 180 ~l~~~d~~-g~~~~~l~~-~~~~~~~p~wSpDG~~la~~s~~~-~~------~~l~~~~l~~g~~---~~l~~~--~g~~ 245 (430)
T PRK00178 180 TLQRSDYD-GARAVTLLQ-SREPILSPRWSPDGKRIAYVSFEQ-KR------PRIFVQNLDTGRR---EQITNF--EGLN 245 (430)
T ss_pred EEEEECCC-CCCceEEec-CCCceeeeeECCCCCEEEEEEcCC-CC------CEEEEEECCCCCE---EEccCC--CCCc
Confidence 46677776 555555554 556789999999999999877432 12 3677889887865 122221 1233
Q ss_pred eEEEEeCCCCeEEEEe-eCCC--cEEEeecCCCeEEEEEc--CCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDS--IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~--tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~ 269 (485)
...+|+ |||+.|+.. +.++ .|.+||+++++.. .+. ...+.+..|||++. ++.++..+....|.++|+.+|+.
T Consensus 246 ~~~~~S-pDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 246 GAPAWS-PDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred CCeEEC-CCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 468898 799988754 4444 5788899988753 233 23456789998665 44443333345788889988885
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--c
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 342 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--T 342 (485)
.. +...........|+ |++.+++..+ .++ .|.+||+.+++......+ .......|+|||+.++-.+ ++ .
T Consensus 324 ~~-lt~~~~~~~~~~~S-pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 324 ER-VTFVGNYNARPRLS-ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred EE-eecCCCCccceEEC-CCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEecCCceE
Confidence 43 22111233456675 7888887765 333 588899999876544332 2233568999999998776 33 4
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
|.+++++|...+.+..+... +...+|||
T Consensus 400 l~~~~~~g~~~~~l~~~~g~-----~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSINGRVRLPLPTAQGE-----VREPSWSP 427 (430)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66777788777666644333 55666665
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-12 Score=129.91 Aligned_cols=241 Identities=11% Similarity=0.091 Sum_probs=154.3
Q ss_pred CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCC
Q 011452 148 NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKN 224 (485)
Q Consensus 148 g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~ 224 (485)
+..++.++..+..+ ...+.+++...++. ..+... -..+.+.+|+ |||+.||+.+.+ .+|.+||+.+
T Consensus 155 ~~~~~~~~~~~~~~-----~~~l~~~d~~g~~~---~~l~~~--~~~~~~p~~S-pdg~~la~~~~~~~~~~i~v~d~~~ 223 (417)
T TIGR02800 155 STRIAYVSKSGKSR-----RYELQVADYDGANP---QTITRS--REPILSPAWS-PDGQKLAYVSFESGKPEIYVQDLAT 223 (417)
T ss_pred CCEEEEEEEeCCCC-----cceEEEEcCCCCCC---EEeecC--CCceecccCC-CCCCEEEEEEcCCCCcEEEEEECCC
Confidence 45566666543111 13455666432222 223332 1234467897 899999998754 4899999999
Q ss_pred CeEEEEE-cCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CC-
Q 011452 225 YTMLYSI-SDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NE- 300 (485)
Q Consensus 225 g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~- 300 (485)
++..... ....+.+++|||++. ++.+.+.+....|.+||+.+|+.. .+..+.......+|+ |++.+|+..+. ++
T Consensus 224 g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s-~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 224 GQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWS-PDGKSIAFTSDRGGS 301 (417)
T ss_pred CCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEEC-CCCCEEEEEECCCCC
Confidence 8643322 234567799998664 554544444567999999888654 444443444567786 68888887653 33
Q ss_pred -cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC---cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 301 -NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 301 -tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.|.+||+.+++.... ..+...+..++|+|||++++..+ +. .|.+||+.+...+.+..+. . .....|+|
T Consensus 302 ~~iy~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~-~-----~~~p~~sp 374 (417)
T TIGR02800 302 PQIYMMDADGGEVRRL-TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG-L-----DESPSFAP 374 (417)
T ss_pred ceEEEEECCCCCEEEe-ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC-C-----CCCceECC
Confidence 577778888775443 33455677889999999999887 65 7889998743334444322 1 34578999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
||+.|+..+.+ +....+.+.+ .+|+....+..+
T Consensus 375 dg~~l~~~~~~--------~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 375 NGRMILYATTR--------GGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred CCCEEEEEEeC--------CCcEEEEEEE-CCCceeeECCCC
Confidence 99999988862 1123466666 347777666544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-12 Score=130.94 Aligned_cols=210 Identities=14% Similarity=0.104 Sum_probs=138.7
Q ss_pred CCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc-CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss-~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
...|.++|...+. ...+. ...+...+|||++..+++.. .+....|.+||+++|+.... ..+...+..++|+ |++
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~s-pDg 245 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFS-PDG 245 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEEC-CCC
Confidence 3456777775443 33332 34699999998666555543 33336899999999876443 2333456678886 778
Q ss_pred CEEEEE-eCC--CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCC
Q 011452 291 EKLLVK-QEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWH 363 (485)
Q Consensus 291 ~~lls~-s~D--~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~ 363 (485)
..|+.. +.+ ..|.+||+.+++..+.. .|........|+|||+.|+..+ ++ .|-+||+.+.....+..+...
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~- 323 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGY- 323 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCC-
Confidence 888764 444 46889999988765544 4444455678999999887665 33 577778764434455544433
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccc
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHS 443 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (485)
+..++|||||++|+..+.+ +.-..|.+||+.+++. ..+..+.
T Consensus 324 ----~~~~~~spdg~~i~~~~~~--------~~~~~i~~~d~~~~~~-~~l~~~~------------------------- 365 (417)
T TIGR02800 324 ----NASPSWSPDGDLIAFVHRE--------GGGFNIAVMDLDGGGE-RVLTDTG------------------------- 365 (417)
T ss_pred ----ccCeEECCCCCEEEEEEcc--------CCceEEEEEeCCCCCe-EEccCCC-------------------------
Confidence 5688999999999998761 1113799999988654 3343322
Q ss_pred cccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 444 HASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 444 ~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
.....+|+|||+.|+.++.++..
T Consensus 366 --------------~~~~p~~spdg~~l~~~~~~~~~ 388 (417)
T TIGR02800 366 --------------LDESPSFAPNGRMILYATTRGGR 388 (417)
T ss_pred --------------CCCCceECCCCCEEEEEEeCCCc
Confidence 12346899999998888776543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=139.95 Aligned_cols=188 Identities=15% Similarity=0.232 Sum_probs=138.8
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
..|+|+ .||..||+++.|+++|||++.+-+.+... +...|.++.|||+++++++-+.+ ..+||++++|-+++++
T Consensus 148 k~vaf~-~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d---~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFN-GDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD---SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEc-CCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC---ceEEEEeccCchhhhc
Confidence 489998 79999999999999999997765544444 24689999999999888776543 8999999999888777
Q ss_pred ecC-Ccc-eeEEEEEecCC---CEEEEE-e-CCCcEEEEECCC--C----eeEEecccCCCceEEEEEcCCCcEEEEEe-
Q 011452 274 NHL-LHR-NKKVDFIEQFN---EKLLVK-Q-ENENLQILDVRN--F----ELTEVSRTEFMTPSAFIFLYENQLFLTFR- 339 (485)
Q Consensus 274 ~~~-~~~-~~~V~f~~~~~---~~lls~-s-~D~tIkIWDv~t--g----~~~~~l~gh~~~v~avaFspdg~llaS~s- 339 (485)
... ... ...+.|+ .++ ..++++ . .-+-|++||+.. + +..+.+.. +..+++++.|+||+++|-|+
T Consensus 224 t~~~k~~~~~~cRF~-~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFS-VDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred CCcccchhhhhceec-ccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence 621 111 2377786 333 233333 3 556777766542 2 22233333 34899999999999999999
Q ss_pred CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 340 NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 340 D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
||.|.|.+.. -++++ .=+.|... |..|.|+||-+++++-|. |.++.|--+
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~-----VT~ltF~Pdsr~~~svSs-----------~~~~~v~~l 353 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGF-----VTGLTFSPDSRYLASVSS-----------DNEAAVTKL 353 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheee-----eeeEEEcCCcCccccccc-----------CCceeEEEE
Confidence 9999999995 55544 45678776 999999999999999776 566666544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-11 Score=132.21 Aligned_cols=235 Identities=12% Similarity=0.086 Sum_probs=151.0
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.++|.+ |...+.+.. ..+.+.+..|||||+.|+.++... .. ..+.++++..|+.. .+... ....
T Consensus 199 ~l~i~d~d-G~~~~~l~~-~~~~~~~p~wSPDG~~La~~s~~~-g~------~~L~~~dl~tg~~~---~lt~~--~g~~ 264 (448)
T PRK04792 199 QLMIADYD-GYNEQMLLR-SPEPLMSPAWSPDGRKLAYVSFEN-RK------AEIFVQDIYTQVRE---KVTSF--PGIN 264 (448)
T ss_pred EEEEEeCC-CCCceEeec-CCCcccCceECCCCCEEEEEEecC-CC------cEEEEEECCCCCeE---EecCC--CCCc
Confidence 55666765 544455544 456789999999999999877432 12 36777888777651 22221 1223
Q ss_pred eEEEEeCCCCeEEEEe-eCCCc--EEEeecCCCeEEEEE-cCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEE
Q 011452 196 GFVEFDDVNGKVLTYS-AQDSI--YKVFDLKNYTMLYSI-SDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~-s~D~t--iKlWdl~~g~~l~tl-~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L 270 (485)
...+|+ |||+.|+.. +.++. |.+||+++++..... ....+.+.+|||++. ++.++..+....|.++|+++|+..
T Consensus 265 ~~~~wS-PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 265 GAPRFS-PDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred CCeeEC-CCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 467898 799988764 55665 777788887643222 223567899998665 444433334457788899888764
Q ss_pred E-EeecCCcceeEEEEEecCCCEEEEEe-CCCcEEE--EECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--c
Q 011452 271 K-SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQI--LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--T 342 (485)
Q Consensus 271 ~-tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkI--WDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--T 342 (485)
+ ++.+ ......+|+ |++++|+..+ .++..+| +|+.+++......+. ......|+|||+.|+-.+ ++ .
T Consensus 344 ~Lt~~g--~~~~~~~~S-pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 344 RLTFEG--EQNLGGSIT-PDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EEecCC--CCCcCeeEC-CCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceE
Confidence 4 2333 334456775 7888888765 4554444 688888765433322 223457999999988766 43 3
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+.+++.+|+..+.+..+... +...+|||
T Consensus 419 l~~~~~~G~~~~~l~~~~g~-----~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSIDGRFKARLPAGQGE-----VKSPAWSP 446 (448)
T ss_pred EEEEECCCCceEECcCCCCC-----cCCCccCC
Confidence 66778889888888765443 56677776
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-13 Score=138.72 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=143.7
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
..|||++++.++++.. .|+++|+|+...-+.+..+..|...|..++|+ ||++.|++-+.| ..+|||+++|.+++..
T Consensus 148 k~vaf~~~gs~latgg--~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS-~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGG--TDGTLRVWEWPSMLTILEEIAHHAEVKDLDFS-PDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCCCEeeecc--ccceEEEEecCcchhhhhhHhhcCccccceeC-CCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 6799997655555533 45999999987777777777777899999997 677777777888 9999999999887776
Q ss_pred cc--CCCceEEEEEcCCC-----cEEEEEe-CCcEEEEeCC---C----cEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 317 RT--EFMTPSAFIFLYEN-----QLFLTFR-NRTVAVWNFR---G----ELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 317 ~g--h~~~v~avaFspdg-----~llaS~s-D~TIklWd~~---G----~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
.. -.-...++.|+-|+ .++++-. -+.|.+|++. | ++-+-+..|. .+.+++.|+||+++|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~------siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK------SISSLAVSDDGKFLA 297 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC------cceeEEEcCCCcEEE
Confidence 42 22245556799888 4444444 5577777752 3 3333333442 289999999999999
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
-|+. ||.|-|.+..+=|+++-++. |. ..|+
T Consensus 298 lGT~-----------dGsVai~~~~~lq~~~~vk~aH~--------------------------------------~~VT 328 (398)
T KOG0771|consen 298 LGTM-----------DGSVAIYDAKSLQRLQYVKEAHL--------------------------------------GFVT 328 (398)
T ss_pred Eecc-----------CCcEEEEEeceeeeeEeehhhhe--------------------------------------eeee
Confidence 9997 79999999988888877643 43 3899
Q ss_pred EEEEcCCCCEEEEecCCCcEEEc
Q 011452 461 ALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 461 sl~fspDg~~LaSgs~DgtVklW 483 (485)
+|.|+||.+.+++-|.|.+++|-
T Consensus 329 ~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred eEEEcCCcCcccccccCCceeEE
Confidence 99999999999999999988763
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=145.53 Aligned_cols=222 Identities=14% Similarity=0.149 Sum_probs=161.5
Q ss_pred eCCCcEEEeecC-CCeE----EEEE-cCCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCe-------EEEEeecC
Q 011452 212 AQDSIYKVFDLK-NYTM----LYSI-SDKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGT-------VLKSFNHL 276 (485)
Q Consensus 212 s~D~tiKlWdl~-~g~~----l~tl-~~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~-------~L~tl~~~ 276 (485)
+.-|.|-|++|. .|++ +-+| .+..|.++.+.| +.+|+++ .+|+.|+||.++.+- .-+.|+.|
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa---~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h 676 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVA---TDDGQINLWRLTANGLPENEMTPEKILTIH 676 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeec---ccCceEEEEEeccCCCCcccCCcceeeecc
Confidence 446889999986 3543 2222 356899999997 7777776 345899999998653 34678899
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc-EE
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE-LV 353 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~-ll 353 (485)
...+.++.|.+.--+-|+++++|-||+|||++++.....+.||++.|..+||||||+++||-+ |++|++++-+ ++ .+
T Consensus 677 ~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 677 GEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred cceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 999999999877677888899999999999999999999999999999999999999999999 9999999986 44 34
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC--CeEEEEecCCCCCCCCcccccCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT--GKCLAKIRASNGLPAENECSCSGD 431 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T--Gk~l~tl~gH~~~~~~~~~~~~~~ 431 (485)
+ +|...- ...---|.|-=||.+|+..+.| .++...|-++|.++ +..|.+..-... |
T Consensus 757 ~--Eg~gpv--gtRgARi~wacdgr~viv~Gfd-------k~SeRQv~~Y~Aq~l~~~pl~t~~lDva-p---------- 814 (1012)
T KOG1445|consen 757 Y--EGKGPV--GTRGARILWACDGRIVIVVGFD-------KSSERQVQMYDAQTLDLRPLYTQVLDVA-P---------- 814 (1012)
T ss_pred c--cCCCCc--cCcceeEEEEecCcEEEEeccc-------ccchhhhhhhhhhhccCCcceeeeeccc-C----------
Confidence 3 333211 0112346777799999988873 33346688888654 233333321100 0
Q ss_pred CCCCCccccccccccccccchhcccCCeEEEEEcCCCCE-EEEecCCCcEEEcc
Q 011452 432 YSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE-IYTGNRHGLVHVWS 484 (485)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~-LaSgs~DgtVklWd 484 (485)
.+.--.|++|... ++||-.|.+|.++.
T Consensus 815 --------------------------s~LvP~YD~Ds~~lfltGKGD~~v~~yE 842 (1012)
T KOG1445|consen 815 --------------------------SPLVPHYDYDSNVLFLTGKGDRFVNMYE 842 (1012)
T ss_pred --------------------------ccccccccCCCceEEEecCCCceEEEEE
Confidence 1111367888775 67888899988764
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-11 Score=134.53 Aligned_cols=317 Identities=11% Similarity=0.123 Sum_probs=205.0
Q ss_pred EEEEeCCCeEEeeecccCcE---EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC-Cc-Cc
Q 011452 108 VFALAQSGVCAAFCRETNQR---ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG-KP-DA 182 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~---l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G-~~-~~ 182 (485)
++..-++-.+-+|+..++.. .+-....|...+.++++||++..+|++-. | +.+.+|. .-| +- ..
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~----d------GrI~vw~-d~~~~~~~~ 242 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDS----D------GRILVWR-DFGSSDDSE 242 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEecc----C------CcEEEEe-ccccccccc
Confidence 44555556666777765441 11123346666899999999999887442 2 3588997 344 11 12
Q ss_pred ccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
...+|.- |-..+..++|+ +||.+|.||++.+..-+|.+.+++ ..-|+ +..|..+.+||++.+.+-.- .|+.|.
T Consensus 243 t~t~lHW-H~~~V~~L~fS-~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~--~DNqI~ 317 (792)
T KOG1963|consen 243 TCTLLHW-HHDEVNSLSFS-SDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVL--EDNQIH 317 (792)
T ss_pred cceEEEe-cccccceeEEe-cCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEe--cCceEE
Confidence 2233332 22346689998 799999999999999999999988 22233 67999999998776654433 357888
Q ss_pred EEecCCCeEEEEeecCCcc-----------eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-----------c
Q 011452 261 ILSIEDGTVLKSFNHLLHR-----------NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-----------T 318 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~-----------~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-----------g 318 (485)
|....+-+...+..|.... ...+.+. |....++--+.-++||++|+.+-+.+.-+. -
T Consensus 318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n 396 (792)
T KOG1963|consen 318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVN 396 (792)
T ss_pred EEeccchhhhhhccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcce
Confidence 8887666666666554332 2244443 445677778899999999999876543321 1
Q ss_pred CCCceEEEEEcCCCcEEEEEe---------CC--cEEEEeCCCc-----EEEEeecCCCCCCCCCeeEEEECCCCC-EEE
Q 011452 319 EFMTPSAFIFLYENQLFLTFR---------NR--TVAVWNFRGE-----LVTSFEDHLLWHPDCNTNNIYITSDQD-LII 381 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s---------D~--TIklWd~~G~-----ll~tl~gH~~~~~~~~v~svafSpDG~-~La 381 (485)
+...+.+++++-.|+.++|.- |+ .+|.|-..+. |.+.. ..+|.++.|-.+.++|-.. ..+
T Consensus 397 ~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I---~~PH~~~~vat~~~~~~rs~~~v 473 (792)
T KOG1963|consen 397 IQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKI---NNPHGNAFVATIFLNPTRSVRCV 473 (792)
T ss_pred eEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEE---ecCCCceeEEEEEecCcccceeE
Confidence 334678888888899999863 22 5788987533 23333 2345556566666666555 788
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITA 461 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 461 (485)
+++. ||.+|||-+..-+.+. .|.. .-.|..- -.|+-..+++
T Consensus 474 ta~~-----------dg~~KiW~~~~~~n~~---k~~s--------------~W~c~~i-----------~sy~k~~i~a 514 (792)
T KOG1963|consen 474 TASV-----------DGDFKIWVFTDDSNIY---KKSS--------------NWTCKAI-----------GSYHKTPITA 514 (792)
T ss_pred Eecc-----------CCeEEEEEEecccccC---cCcc--------------ceEEeee-----------eccccCcccc
Confidence 8876 7999999864322211 1110 0111111 0122238899
Q ss_pred EEEcCCCCEEEEecCCCcEEEcc
Q 011452 462 LFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 462 l~fspDg~~LaSgs~DgtVklWd 484 (485)
++||.||. |.+.|.|++|-+||
T Consensus 515 ~~fs~dGs-lla~s~~~~Itiwd 536 (792)
T KOG1963|consen 515 LCFSQDGS-LLAVSFDDTITIWD 536 (792)
T ss_pred hhhcCCCc-EEEEecCCEEEEec
Confidence 99999995 66677899999998
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-11 Score=118.72 Aligned_cols=195 Identities=12% Similarity=0.183 Sum_probs=133.4
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE------EEEE---------cCCcEEEEEEcC-CceEEEEEcCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM------LYSI---------SDKNVQEIKISP-GIMLLIFTKAS 254 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~------l~tl---------~~~~V~~VafSp-g~~ll~sss~~ 254 (485)
|-+.+..++|. | ..|.||+ ||.||=|-...... +..+ .--.|+++-.-| .+.++.++
T Consensus 61 hdgpiy~~~f~--d-~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--- 133 (325)
T KOG0649|consen 61 HDGPIYYLAFH--D-DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--- 133 (325)
T ss_pred cCCCeeeeeee--h-hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---
Confidence 33445567774 2 3555554 57777666542221 1111 112577777776 33444332
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---------C-CCceE
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---------E-FMTPS 324 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---------h-~~~v~ 324 (485)
+|..+.-||+|+|+..++|+||++.+-+|.-- ..++++++|++|||+||||.+|+++.+++.. | ..+|-
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R-~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wig 212 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGR-NANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIG 212 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeec-ccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeE
Confidence 56899999999999999999999999999863 3478999999999999999999999887632 2 23555
Q ss_pred EEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEe--ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~sD~TIklWd~~-G~ll~tl--~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
+++- +...|+.|......||+++ -++..+| .+| |.-+.|-. +.+++++. -+-|+
T Consensus 213 ala~--~edWlvCGgGp~lslwhLrsse~t~vfpipa~--------v~~v~F~~--d~vl~~G~-----------g~~v~ 269 (325)
T KOG0649|consen 213 ALAV--NEDWLVCGGGPKLSLWHLRSSESTCVFPIPAR--------VHLVDFVD--DCVLIGGE-----------GNHVQ 269 (325)
T ss_pred EEec--cCceEEecCCCceeEEeccCCCceEEEecccc--------eeEeeeec--ceEEEecc-----------cccee
Confidence 5544 5567888777788999996 6766655 455 66777744 46677664 36788
Q ss_pred EEeCCCCeEEEEecCC
Q 011452 402 ISNILTGKCLAKIRAS 417 (485)
Q Consensus 402 lWdl~TGk~l~tl~gH 417 (485)
-|.+. |..-+.++.-
T Consensus 270 ~~~l~-Gvl~a~ip~~ 284 (325)
T KOG0649|consen 270 SYTLN-GVLQANIPVE 284 (325)
T ss_pred eeeec-cEEEEeccCC
Confidence 89864 7777766653
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-11 Score=137.87 Aligned_cols=253 Identities=14% Similarity=0.184 Sum_probs=168.8
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----------------CcEEEEEEcC-CceEEEEEcC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----------------KNVQEIKISP-GIMLLIFTKA 253 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~----------------~~V~~VafSp-g~~ll~sss~ 253 (485)
.+..|..|++++.+|.+.++.+..+.|++||+. |+.+..+.. +.-+.|+|.+ ++.+.++...
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 356788899986678899999999999999975 555444421 1247899997 5566666433
Q ss_pred CCCeeEEEEecCCCeEEEEeecC-----------------CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEe
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHL-----------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEV 315 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~-----------------~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~ 315 (485)
...|+.+|..+|. +.+|.+- ...-+.|+|. ++++.+.++ ..++.|++||..++.....
T Consensus 645 --n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~d-p~~g~LyVad~~~~~I~v~d~~~g~v~~~ 720 (1057)
T PLN02919 645 --NHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFE-PVNEKVYIAMAGQHQIWEYNISDGVTRVF 720 (1057)
T ss_pred --CceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEe-cCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 2689999998765 5555321 1122478886 555666665 6899999999998865432
Q ss_pred c--------c------cCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-CcEEEEeec--------------CCCCC-
Q 011452 316 S--------R------TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFED--------------HLLWH- 363 (485)
Q Consensus 316 l--------~------gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G~ll~tl~g--------------H~~~~- 363 (485)
. . .....++.++|+|||+ ++++-+ +++|++||++ |+.. .+.+ +....
T Consensus 721 ~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~-~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 721 SGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR-LLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred ecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE-EEEecccccCcccccccCCCCchh
Confidence 1 1 1234678899999998 666667 8999999996 5421 1111 00000
Q ss_pred --CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 364 --PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 364 --~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
....-.+|+|+|||++.++-+. +++|++||..++++. ++.+... +...++.
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs~-----------N~rIrviD~~tg~v~-tiaG~G~------~G~~dG~--------- 852 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADSY-----------NHKIKKLDPATKRVT-TLAGTGK------AGFKDGK--------- 852 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEECC-----------CCEEEEEECCCCeEE-EEeccCC------cCCCCCc---------
Confidence 0001258999999998888664 699999999888765 4444220 0001110
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..+..+.....|+++|||+.+++-+.+++|++||.
T Consensus 853 ---------~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~ 887 (1057)
T PLN02919 853 ---------ALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDL 887 (1057)
T ss_pred ---------ccccccCCceEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 01111235678999999999999999999999984
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-12 Score=144.31 Aligned_cols=265 Identities=9% Similarity=0.032 Sum_probs=185.8
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
.++|.+++-. -+.+++...|..|.-+...+...++ .+.|+..+- +.+-+...+...+..++.+..
T Consensus 17 ~~~llag~gp-~i~~yd~~s~~li~~~~~~~~~~~H----~~e~~~~l~---------~~~~v~~~~~~~v~~~~~~~~- 81 (967)
T KOG0974|consen 17 SDYLLAGSGP-EILVYDLSSGCLIRHLIQSKILEVH----RGEGKVKLL---------SGKIVTCAKSDEVYVKEASNQ- 81 (967)
T ss_pred cceeeecCCC-ceEEeeCCchhHhhhhhhhcccccc----cccccceec---------cceEEEEEeecceeecchhhh-
Confidence 3667666533 5678888888877766554444444 233322111 111122222333333333210
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-C-----cEEEEEEcCCceEEEEEcCCCCee
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-K-----NVQEIKISPGIMLLIFTKASGHVP 258 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~-----~V~~VafSpg~~ll~sss~~~D~t 258 (485)
+...-..|+..-.+.. +.+.++....++.+-+||.+.+.++..+.. . ...-+-+|+....+.+++.. +.
T Consensus 82 --~~~~~s~wi~g~~l~~-e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~--~~ 156 (967)
T KOG0974|consen 82 --IIERFSDWIFGAKLFE-ENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVF--GE 156 (967)
T ss_pred --hhhhccccccccchhh-hcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecccc--cc
Confidence 1111224544434432 345667777789999999999887766643 2 23345666766666554443 78
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-ecccCCCceEEEEEcCCCcEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~-~l~gh~~~v~avaFspdg~llaS 337 (485)
|-+|+..--+.-.-+.||.+.++++.++ .++.++++.|+|.++|||++++++... +.=||..+||++.|+|. .++|
T Consensus 157 iivW~~~~dn~p~~l~GHeG~iF~i~~s-~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t 233 (967)
T KOG0974|consen 157 IIVWKPHEDNKPIRLKGHEGSIFSIVTS-LDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIIT 233 (967)
T ss_pred EEEEeccccCCcceecccCCceEEEEEc-cCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEE
Confidence 9999986222222488999999999997 678899999999999999999998766 66699999999999999 8999
Q ss_pred Ee-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 338 FR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 338 ~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
++ |-|.++|+.+|+.+..+++|...+ ++.++..++.-.++++.. |++||+||+.+
T Consensus 234 ~gedctcrvW~~~~~~l~~y~~h~g~~----iw~~~~~~~~~~~vT~g~-----------Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 234 VGEDCTCRVWGVNGTQLEVYDEHSGKG----IWKIAVPIGVIIKVTGGN-----------DSTLKLWDLNG 289 (967)
T ss_pred eccceEEEEEecccceehhhhhhhhcc----eeEEEEcCCceEEEeecc-----------Ccchhhhhhhc
Confidence 99 999999999999999999999875 899999999999999875 89999999864
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-10 Score=135.86 Aligned_cols=244 Identities=12% Similarity=0.182 Sum_probs=160.2
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc----------eeeeccccCceEEEEeCCCCe-EE
Q 011452 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA----------LFESESLKWPGFVEFDDVNGK-VL 208 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~----------lf~~~~~~~~~~V~Fs~pnG~-~L 208 (485)
..|++++++..|..+ |... +.|.+++. .|+...... .+....+..|..|+|+ ++|. +.
T Consensus 571 ~gvavd~~~g~lyVa--Ds~n-------~rI~v~d~-~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-~~gn~LY 639 (1057)
T PLN02919 571 GKLAIDLLNNRLFIS--DSNH-------NRIVVTDL-DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-AKKNLLY 639 (1057)
T ss_pred ceEEEECCCCeEEEE--ECCC-------CeEEEEeC-CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-CCCCEEE
Confidence 468998865544432 2223 46777774 555410000 1112245668899998 5554 55
Q ss_pred EEeeCCCcEEEeecCCCeEEEEEcC-------------------CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 209 TYSAQDSIYKVFDLKNYTMLYSISD-------------------KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~tl~~-------------------~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
++....+.|+++|+.++. +.++.+ +.=+.|+|+| ++.+.++.. .++.|++||..+|.
T Consensus 640 VaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 640 VADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGV 716 (1057)
T ss_pred EEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCe
Confidence 555666889999998765 333311 1235799998 777777754 34799999998886
Q ss_pred EEEEeecC---------------CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc---------------
Q 011452 269 VLKSFNHL---------------LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR--------------- 317 (485)
Q Consensus 269 ~L~tl~~~---------------~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~--------------- 317 (485)
.. ++.+. ...-..|+|+ ++++.|.++ +.++.|++||+.++.......
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-pdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-PDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEe-CCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 53 33221 1122368886 667767665 688999999999875321110
Q ss_pred ------cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC--C-------CCCCCeeEEEECCCCCEEE
Q 011452 318 ------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL--W-------HPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 318 ------gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~--~-------~~~~~v~svafSpDG~~La 381 (485)
.....+..++|+|+|+++++-+ +++|++||.++..+.++.+... . ........|+++|||++++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 1233578999999999999998 9999999997555555554221 0 0001256899999999888
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+-+. +++|++||+.+++.
T Consensus 875 aDt~-----------Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 875 ADTN-----------NSLIRYLDLNKGEA 892 (1057)
T ss_pred EECC-----------CCEEEEEECCCCcc
Confidence 8654 69999999999875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-10 Score=117.85 Aligned_cols=183 Identities=12% Similarity=0.189 Sum_probs=141.9
Q ss_pred eEEEEeeCCC--cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-Cccee
Q 011452 206 KVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-LHRNK 281 (485)
Q Consensus 206 ~~Las~s~D~--tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-~~~~~ 281 (485)
.++|-.+.+. ..|+-+.+.+..+-.+. ...|.+|++.-+.+++.- . ..|.|.||.+=++|+|+..- .+...
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fpt~IL~VrmNr~RLvV~L--e---e~IyIydI~~MklLhTI~t~~~n~~g 131 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKKKTTICEIFFPTSILAVRMNRKRLVVCL--E---ESIYIYDIKDMKLLHTIETTPPNPKG 131 (391)
T ss_pred ceeEEEecCCCceEEEEEcccCceEEEEecCCceEEEEEccceEEEEE--c---ccEEEEecccceeehhhhccCCCccc
Confidence 4555555444 49999998777554443 468999999977666544 2 35999999999999999743 12223
Q ss_pred EEEEEecC-CCEEEE-Ee-CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCC-CcEEEE
Q 011452 282 KVDFIEQF-NEKLLV-KQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTS 355 (485)
Q Consensus 282 ~V~f~~~~-~~~lls-~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~-G~ll~t 355 (485)
-.||++.. +-+|+- ++ .-|.|.|||+.+-+...++..|...+-+++|+|+|.+|||+| .| -|||..+. |+.++.
T Consensus 132 l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 132 LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 55665322 336666 34 679999999999999999999999999999999999999999 55 57999994 999999
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|.--.. .+++.+++|+||+++|++.|. -+||.|+.+.+
T Consensus 212 FRRG~~---~~~IySL~Fs~ds~~L~~sS~-----------TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGTY---PVSIYSLSFSPDSQFLAASSN-----------TETVHIFKLEK 249 (391)
T ss_pred eeCCce---eeEEEEEEECCCCCeEEEecC-----------CCeEEEEEecc
Confidence 975443 366999999999999998875 69999998864
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-11 Score=127.04 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=134.7
Q ss_pred cEEEeecCCCeEEE-EEcCCcEEEEEEcCCce---EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 216 IYKVFDLKNYTMLY-SISDKNVQEIKISPGIM---LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 216 tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~---ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
.|-+.|...++... |-....+.+-+|||++. ++..+..++...|.+.++.+|+..+ +....+.....+|+ |||.
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wS-PDG~ 243 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFS-PRKK 243 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEEC-CCCC
Confidence 45555655554322 22234567889999764 2222333333568888998886533 22233455677886 7888
Q ss_pred EEEEEe-C----CCcEEEEECCC---CeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeC--C--CcEEEEee
Q 011452 292 KLLVKQ-E----NENLQILDVRN---FELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--R--GELVTSFE 357 (485)
Q Consensus 292 ~lls~s-~----D~tIkIWDv~t---g~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~--~--G~ll~tl~ 357 (485)
+|+..+ . |-.+.+||+.+ ++..+...++.....+.+|||||+.|+..+ ++..+||.+ + |...+.++
T Consensus 244 ~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt 323 (428)
T PRK01029 244 LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT 323 (428)
T ss_pred EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec
Confidence 988764 2 34566688876 344555544444556789999999888665 677777754 3 34455555
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
.+... +....|||||++|+..+.. .....|.+||+.+|++.. |....
T Consensus 324 ~~~~~-----~~~p~wSPDG~~Laf~~~~--------~g~~~I~v~dl~~g~~~~-Lt~~~------------------- 370 (428)
T PRK01029 324 KKYRN-----SSCPAWSPDGKKIAFCSVI--------KGVRQICVYDLATGRDYQ-LTTSP------------------- 370 (428)
T ss_pred cCCCC-----ccceeECCCCCEEEEEEcC--------CCCcEEEEEECCCCCeEE-ccCCC-------------------
Confidence 54433 5678999999999987651 113579999999988643 43222
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEE-EecCC--CcEEEcc
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY-TGNRH--GLVHVWS 484 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La-Sgs~D--gtVklWd 484 (485)
..+.+..|+|||+.|+ ++..+ ..|.+||
T Consensus 371 -------------------~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vd 401 (428)
T PRK01029 371 -------------------ENKESPSWAIDSLHLVYSAGNSNESELYLIS 401 (428)
T ss_pred -------------------CCccceEECCCCCEEEEEECCCCCceEEEEE
Confidence 1445689999999876 44443 3455554
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.4e-11 Score=124.46 Aligned_cols=204 Identities=10% Similarity=0.071 Sum_probs=135.6
Q ss_pred CceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCe
Q 011452 194 WPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.+.+|+ |||+.|++.+.+ ..|.+||+.+|+...... ...+...+|||++. ++.+.+.+++..|.+||+++|+
T Consensus 200 ~~~~p~wS-pDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWS-PDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeEC-CCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 34578898 799999988754 368899999887533222 23456799998664 5545444445678999999887
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEe-CC--CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR-- 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D--~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~-- 341 (485)
.. .+..+........|+ |++.+|+..+ .+ ..|.++|+.+++..+.... .......+|+|||+.|+-.+ ++
T Consensus 279 ~~-~lt~~~~~~~~~~~s-pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~-~~~~~~~~~Spdg~~i~~~~~~~~~~ 355 (430)
T PRK00178 279 LS-RVTNHPAIDTEPFWG-KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV-GNYNARPRLSADGKTLVMVHRQDGNF 355 (430)
T ss_pred eE-EcccCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEEccCCce
Confidence 54 455444455577886 7888888775 33 3577778888886554321 12234567999999998776 33
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.|.+||+. |+. +.+.. ... ..+..|+|||+.|+-.+.. +....|.+.++. |+....|..+
T Consensus 356 ~l~~~dl~tg~~-~~lt~-~~~-----~~~p~~spdg~~i~~~~~~--------~g~~~l~~~~~~-g~~~~~l~~~ 416 (430)
T PRK00178 356 HVAAQDLQRGSV-RILTD-TSL-----DESPSVAPNGTMLIYATRQ--------QGRGVLMLVSIN-GRVRLPLPTA 416 (430)
T ss_pred EEEEEECCCCCE-EEccC-CCC-----CCCceECCCCCEEEEEEec--------CCceEEEEEECC-CCceEECcCC
Confidence 57888996 553 44442 212 2356899999999988751 122457788864 6666666644
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-13 Score=139.82 Aligned_cols=197 Identities=18% Similarity=0.192 Sum_probs=167.1
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
|..+.|+ .||..|+-++.-|-+-.+|..++++...+. -..|.+|+|- ..+++|+++. ..+.|+| ..|++|+-
T Consensus 132 PY~~~yt-rnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK----~y~yvYD-~~GtElHC 205 (545)
T KOG1272|consen 132 PYHLDYT-RNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQK----KYVYVYD-NNGTELHC 205 (545)
T ss_pred Ceeeeec-CCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhh----ceEEEec-CCCcEEee
Confidence 4467887 699999999999999999999999999987 4689999998 5777777643 5889999 58999999
Q ss_pred eecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR- 349 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~- 349 (485)
++.| ..+..+.|.| --.||+ +++.|-++--||.+|+++..++.-.+.+....-.|-+-.+-.|- +|||.+|.-.
T Consensus 206 lk~~-~~v~rLeFLP--yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~s 282 (545)
T KOG1272|consen 206 LKRH-IRVARLEFLP--YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNS 282 (545)
T ss_pred hhhc-Cchhhhcccc--hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCC
Confidence 9865 6788999985 345555 57999999999999999888877777777777888888888887 9999999996
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-+.+..+-.|... |++|||.|+|+|+|+.+. |..+||||+..-+.+.++.-
T Consensus 283 kePLvKiLcH~g~-----V~siAv~~~G~YMaTtG~-----------Dr~~kIWDlR~~~ql~t~~t 333 (545)
T KOG1272|consen 283 KEPLVKILCHRGP-----VSSIAVDRGGRYMATTGL-----------DRKVKIWDLRNFYQLHTYRT 333 (545)
T ss_pred cchHHHHHhcCCC-----cceEEECCCCcEEeeccc-----------ccceeEeeeccccccceeec
Confidence 7777777789887 999999999999999987 79999999987666666544
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4e-11 Score=117.69 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=133.7
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCC---------Ce-EEEEE--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKN---------YT-MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~---------g~-~l~tl--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
+.+ |-+++|+.|+.+|+|-+..++. |+ .+.+. |+..|..++|.++ .|++. +|+-|+=|-...
T Consensus 17 a~s-p~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~-~Lls~----gdG~V~gw~W~E 90 (325)
T KOG0649|consen 17 AIS-PSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD-FLLSG----GDGLVYGWEWNE 90 (325)
T ss_pred hhC-CcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh-heeec----cCceEEEeeehh
Confidence 455 6799999999999999999863 22 23333 4568999999954 44433 347888775432
Q ss_pred CeE---EEE---e--ecCC-----cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE-cCCC
Q 011452 267 GTV---LKS---F--NHLL-----HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-LYEN 332 (485)
Q Consensus 267 G~~---L~t---l--~~~~-----~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-spdg 332 (485)
-.. +|. . ..|. ..++++-.. |...-++.++.|+.+.-||+++|+..++++||++.+-+|+- +..+
T Consensus 91 ~~es~~~K~lwe~~~P~~~~~~evPeINam~ld-P~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~ 169 (325)
T KOG0649|consen 91 EEESLATKRLWEVKIPMQVDAVEVPEINAMWLD-PSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG 169 (325)
T ss_pred hhhhccchhhhhhcCccccCcccCCccceeEec-cCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence 111 111 1 1111 223344443 33445555559999999999999999999999999999998 5566
Q ss_pred cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC---CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 333 QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW---HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 333 ~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~---~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
| ++||+ |||+||||.. ++++.+++--... -|+..-+--|.--|.++|++|.. ..+-||++.+
T Consensus 170 q-ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------------p~lslwhLrs 236 (325)
T KOG0649|consen 170 Q-ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------------PKLSLWHLRS 236 (325)
T ss_pred c-eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCC------------CceeEEeccC
Confidence 6 67888 9999999995 9999988743221 11111122344456669999874 5688999988
Q ss_pred CeEEEEec
Q 011452 408 GKCLAKIR 415 (485)
Q Consensus 408 Gk~l~tl~ 415 (485)
-+|..+|.
T Consensus 237 se~t~vfp 244 (325)
T KOG0649|consen 237 SESTCVFP 244 (325)
T ss_pred CCceEEEe
Confidence 77766654
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-11 Score=116.77 Aligned_cols=153 Identities=16% Similarity=0.236 Sum_probs=112.9
Q ss_pred cCEEEEEeC----------CCeEEeeec-ccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 105 RDIVFALAQ----------SGVCAAFCR-ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ias~s~----------dgtiklW~~-~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
|++|+.... -|...||.+ ..+..+..+.-..++.|.+++|||+|+.+|.+. |..+ ..+.||
T Consensus 17 G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~--g~~~------~~v~ly 88 (194)
T PF08662_consen 17 GDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY--GSMP------AKVTLY 88 (194)
T ss_pred CCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE--ccCC------cccEEE
Confidence 666666555 234556655 335666667654556799999999999988754 3334 589999
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---SIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIF 250 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~s 250 (485)
+++ ++. ++... ......|.|+ |+|++|+.++.+ |.+.+||+.+.+.+.+.....+..++|||+|+.+++
T Consensus 89 d~~-~~~-----i~~~~-~~~~n~i~ws-P~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 89 DVK-GKK-----IFSFG-TQPRNTISWS-PDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred cCc-ccE-----eEeec-CCCceEEEEC-CCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence 974 554 34432 2345689998 899999998754 569999999999999988778899999997777776
Q ss_pred EcCC----CCeeEEEEecCCCeEEEEee
Q 011452 251 TKAS----GHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 251 ss~~----~D~tIklWdi~tG~~L~tl~ 274 (485)
+... .|..++||+. +|+++....
T Consensus 161 a~t~~r~~~dng~~Iw~~-~G~~l~~~~ 187 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSF-QGRLLYKKP 187 (194)
T ss_pred EEeccceeccccEEEEEe-cCeEeEecc
Confidence 6543 4789999998 688887654
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.9e-12 Score=134.90 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=146.8
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EE----EEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEEEec
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--ML----YSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l----~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi 264 (485)
+..+.|++-+..+||+||+|.+||||.+..|- .| ..+. +-.|.++.|+| ++.+++++. ++++|||+
T Consensus 82 VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~----g~v~i~D~ 157 (1012)
T KOG1445|consen 82 VTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAH----GSVYITDI 157 (1012)
T ss_pred eeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccC----ceEEEEEc
Confidence 34556665566799999999999999997443 22 1111 12578899997 887776532 69999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCC-ceEEEEEcCCCcEEEEEe-C-
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFM-TPSAFIFLYENQLFLTFR-N- 340 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~-~v~avaFspdg~llaS~s-D- 340 (485)
.+++.+..+.+|..-+.+..|++ ||..|++++.|+.|+|+|.+. ++.+++..+|.+ .=..|+|.-+-..|+|.+ +
T Consensus 158 stqk~~~el~~h~d~vQSa~Wse-DG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 158 STQKTAVELSGHTDKVQSADWSE-DGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCceeecccCCchhhhcccccc-CCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccch
Confidence 99999999999999999999975 555555567999999999985 688999999975 444577776666777665 4
Q ss_pred ---CcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 341 ---RTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 341 ---~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+.|++||.+ |..++||+=...- + |.-=-|.||-.+|+-+++. +.+|.+..+...+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~st---G-vLiPl~DpDt~llfLaGKG----------~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSST---G-VLIPLYDPDTRLLFLAGKG----------TNKLFMLEMQDRQ 296 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeeccc---c-eEeeeecCCCceEEEecCC----------cceEEEEEecCCC
Confidence 589999995 8888888743321 1 4445678999999988872 5778887776443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-11 Score=135.94 Aligned_cols=276 Identities=11% Similarity=0.112 Sum_probs=187.3
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecC--CcccEEEEEE-eeCC-CEEEEEEeecCCCCcccceeEEEEeEe-cc--
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVT--ADEVIRSLFY-NKNN-DSLITVSVYASDNFSSLRCRSTRIEYI-RR-- 177 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~--~~~~i~sv~~-spdg-~~Las~S~d~~~d~stL~~~t~~lw~i-~~-- 177 (485)
...|+++...-+|++||-+.|+++..+..+ ....|..+-| |-+. .+|.++| .| +.||||.- ..
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas----~d------GvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS----SD------GVIRIWKDYADKW 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec----cC------ceEEEeccccccc
Confidence 788888888889999999888876644221 2235666666 4443 4566666 34 59999964 22
Q ss_pred CCcCcccceeee--cc----ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEEEEEEc-C-Cce
Q 011452 178 GKPDAGFALFES--ES----LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKIS-P-GIM 246 (485)
Q Consensus 178 G~~~~~~~lf~~--~~----~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~~VafS-p-g~~ 246 (485)
+++.- ..-|.. +. .+----+++--.+|.++++|. =+.|||||+..-+++..+.- .-|.++.=+ + |++
T Consensus 1146 ~~~eL-VTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~ 1223 (1387)
T KOG1517|consen 1146 KKPEL-VTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNI 1223 (1387)
T ss_pred CCcee-EEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCce
Confidence 22200 001111 00 000012455445677776654 79999999998888887752 356666555 3 567
Q ss_pred EEEEEcCCCCeeEEEEecCCCe---EEEEeecCCcc--eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccC
Q 011452 247 LLIFTKASGHVPLKILSIEDGT---VLKSFNHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTE 319 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~---~L~tl~~~~~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh 319 (485)
++++- .|+.|+++|...-. .+...+.|+.. |..+.+-+..-+.|++++.||.|++||++.......+ ..|
T Consensus 1224 i~AGf---aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~ 1300 (1387)
T KOG1517|consen 1224 IAAGF---ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAH 1300 (1387)
T ss_pred EEEee---cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeec
Confidence 66653 45899999975432 34566777777 7778876544457999999999999999975322222 222
Q ss_pred C--C-ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCC--CCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 320 F--M-TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 320 ~--~-~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~--~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
- + ..+++...++..++|||+-+.||||++.|+.+..+.-+... +.-+.+..++|.|-.-+||.|+.
T Consensus 1301 ~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~--------- 1371 (1387)
T KOG1517|consen 1301 WEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSA--------- 1371 (1387)
T ss_pred cccCccceeeeeccCCCeeeecCcceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccC---------
Confidence 2 3 48889899999999999989999999999998887755432 22234789999999999999875
Q ss_pred CCCCeEEEEeCC
Q 011452 395 GNAGSINISNIL 406 (485)
Q Consensus 395 ~~DgtIklWdl~ 406 (485)
|.+|.|+...
T Consensus 1372 --Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1372 --DSTVSIYSCE 1381 (1387)
T ss_pred --CceEEEeecC
Confidence 7999998754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.1e-10 Score=120.25 Aligned_cols=317 Identities=15% Similarity=0.230 Sum_probs=212.2
Q ss_pred eEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec
Q 011452 98 IIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (485)
Q Consensus 98 V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~ 176 (485)
+...+++ +-.+++.+.++.+++++..++..+.+... . -++.+-|||-|.+|.+==..+..+=.+-..--+++|++.
T Consensus 37 ~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~ve 113 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVE 113 (566)
T ss_pred ceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeecccccccccccccccccCCCCCCCceeeeeec
Confidence 4455566 67788999999999999998854444444 2 589999999999986611000000001112345578887
Q ss_pred cCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCC---ceEEEEE
Q 011452 177 RGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPG---IMLLIFT 251 (485)
Q Consensus 177 ~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~VafSpg---~~ll~ss 251 (485)
+|.... -++.- .-+| ...|+ +|..+.|-- .-+.+.++++.+-+ ....|+...|...++||+ -.+|++-
T Consensus 114 t~~~~s---~~q~k~Q~~W--~~qfs-~dEsl~arl-v~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyv 186 (566)
T KOG2315|consen 114 TGVQRS---QIQKKMQNGW--VPQFS-IDESLAARL-VSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYV 186 (566)
T ss_pred cceehh---heehhhhcCc--ccccc-cchhhhhhh-hcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEc
Confidence 765522 12211 1234 67787 454332222 25689999988754 456677788999999987 4566664
Q ss_pred cCCC--CeeEEEEecCCCeEE-----EEeecCCcceeEEEE--EecCCCEEEEEe--CC---------CcEEEEECCCCe
Q 011452 252 KASG--HVPLKILSIEDGTVL-----KSFNHLLHRNKKVDF--IEQFNEKLLVKQ--EN---------ENLQILDVRNFE 311 (485)
Q Consensus 252 s~~~--D~tIklWdi~tG~~L-----~tl~~~~~~~~~V~f--~~~~~~~lls~s--~D---------~tIkIWDv~tg~ 311 (485)
.+.. -..+|||...-+..- ++|- .-.+|.| .......|+..+ -| .++.+.+++...
T Consensus 187 Pe~kGaPa~vri~~~~~~~~~~~~a~ksFF----kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s 262 (566)
T KOG2315|consen 187 PEKKGAPASVRIYKYPEEGQHQPVANKSFF----KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGES 262 (566)
T ss_pred cCCCCCCcEEEEeccccccccchhhhcccc----ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCce
Confidence 4432 357899987522221 2221 0113443 222123333333 34 589999999555
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe---CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s---D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
+.-.|. -.+.|.+|.|+|.|+-|+..- =-+|.|+|++|..+..|-. .. =|.++|+|.|.+|+-++.
T Consensus 263 ~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e--gp-----RN~~~fnp~g~ii~lAGF--- 331 (566)
T KOG2315|consen 263 VSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE--GP-----RNTAFFNPHGNIILLAGF--- 331 (566)
T ss_pred EEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC--CC-----ccceEECCCCCEEEEeec---
Confidence 555554 456999999999998888764 6799999999999998842 22 488999999999999997
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
+ ---|.|-+||+.+-|||.++.+-. -+-..|+|||
T Consensus 332 -G----NL~G~mEvwDv~n~K~i~~~~a~~----------------------------------------tt~~eW~PdG 366 (566)
T KOG2315|consen 332 -G----NLPGDMEVWDVPNRKLIAKFKAAN----------------------------------------TTVFEWSPDG 366 (566)
T ss_pred -C----CCCCceEEEeccchhhccccccCC----------------------------------------ceEEEEcCCC
Confidence 2 235889999999999999998743 2347999999
Q ss_pred CEEEEec------CCCcEEEcc
Q 011452 469 NEIYTGN------RHGLVHVWS 484 (485)
Q Consensus 469 ~~LaSgs------~DgtVklWd 484 (485)
+.++|+. .|+-+|||+
T Consensus 367 e~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred cEEEEEeccccEEecCCeEEEE
Confidence 9999997 489999996
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.7e-11 Score=128.75 Aligned_cols=255 Identities=10% Similarity=0.071 Sum_probs=177.5
Q ss_pred EEEEeEeccC-CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEE------cCCcEEEE
Q 011452 169 STRIEYIRRG-KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSI------SDKNVQEI 239 (485)
Q Consensus 169 t~~lw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl------~~~~V~~V 239 (485)
.+-||+++.- ++ ...|.. ..-+..++|.+-+..+||.|..+|.|-+||+..+.. ...+ |...|..|
T Consensus 223 ~~~vW~~~~p~~P---e~~~~~--~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v 297 (555)
T KOG1587|consen 223 VLLVWSLKNPNTP---ELVLES--PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV 297 (555)
T ss_pred eEEEEecCCCCCc---eEEEec--CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence 5778887544 22 123332 334557899988899999999999999999987664 2222 23467776
Q ss_pred EEc--C-CceEEEEEcCCCCeeEEEEecCCC------eEEEEee------cCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 240 KIS--P-GIMLLIFTKASGHVPLKILSIEDG------TVLKSFN------HLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 240 afS--p-g~~ll~sss~~~D~tIklWdi~tG------~~L~tl~------~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
.+- + +-.+++. + .|+.|+.|++..= .++-+.. .-...+..++|.+-+...+++|.++|.|--
T Consensus 298 vW~~~~~~~~f~s~-s--sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~ 374 (555)
T KOG1587|consen 298 VWLQNEHNTEFFSL-S--SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYK 374 (555)
T ss_pred EEeccCCCCceEEE-e--cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEE
Confidence 666 2 3334443 3 3689999987532 2222222 112345689998777889999999999876
Q ss_pred ---EECCCCe-----eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEE
Q 011452 305 ---LDVRNFE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 305 ---WDv~tg~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svaf 373 (485)
++.+.+. .+.+...|.+.|+++-++|-+..+..++ |-|||||.-. -..+..++.|... |.++++
T Consensus 375 ~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~-----v~~vaW 449 (555)
T KOG1587|consen 375 GCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY-----VTDVAW 449 (555)
T ss_pred EeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce-----eeeeEE
Confidence 3444333 2446677899999999999988877776 9999999974 6678888888876 899999
Q ss_pred CCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--EEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 374 TSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 374 SpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
||--- .++++.. ||.|.|||+..-.+ +.+.+-+.
T Consensus 450 SptrpavF~~~d~-----------~G~l~iWDLl~~~~~Pv~s~~~~~-------------------------------- 486 (555)
T KOG1587|consen 450 SPTRPAVFATVDG-----------DGNLDIWDLLQDDEEPVLSQKVCS-------------------------------- 486 (555)
T ss_pred cCcCceEEEEEcC-----------CCceehhhhhccccCCcccccccc--------------------------------
Confidence 99764 4444433 89999999863222 11111111
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
...+-+.++++|+.|+.|..-|+|++|++
T Consensus 487 ------~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 487 ------PALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ------cccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 15567899999999999999999999974
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-09 Score=112.45 Aligned_cols=272 Identities=15% Similarity=0.079 Sum_probs=168.7
Q ss_pred EEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 102 ~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
++.++.|+.++.+|.+..+|..+|+.+-..+. ......+++. ++..++.++. + ..+..+|..+|+.
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~-~~~~~~~p~v--~~~~v~v~~~----~------g~l~ald~~tG~~- 127 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDL-DERLSGGVGA--DGGLVFVGTE----K------GEVIALDAEDGKE- 127 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecC-CCCcccceEE--cCCEEEEEcC----C------CEEEEEECCCCcE-
Confidence 44589999999999999999999998865544 2222233333 4566665442 2 3677778788886
Q ss_pred cccceeeeccccCce-EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-cEEE------EEEcCCceEEEEEcC
Q 011452 182 AGFALFESESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQE------IKISPGIMLLIFTKA 253 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~-~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~------VafSpg~~ll~sss~ 253 (485)
+|+......+. ..... ++++++ ++.|+.+..||+++|+.+...... .... ..+. ++.+++. .
T Consensus 128 ----~W~~~~~~~~~~~p~v~--~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~~v~~~-~- 197 (377)
T TIGR03300 128 ----LWRAKLSSEVLSPPLVA--NGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DGGVLVG-F- 197 (377)
T ss_pred ----eeeeccCceeecCCEEE--CCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CCEEEEE-C-
Confidence 55542111111 11222 455554 567999999999999988776532 2111 1222 4454443 2
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCc-------ceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSA 325 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~-------~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~a 325 (485)
.++.+.-+|+++|+.+.+...... +...+.-.+ ..++.+.+++.++.+..||.++|+.+-..... ....
T Consensus 198 -~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~--~~~~ 274 (377)
T TIGR03300 198 -AGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS--SYQG 274 (377)
T ss_pred -CCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC--CccC
Confidence 236899999999998876542100 000010000 13678888889999999999999876654311 1122
Q ss_pred EEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 326 FIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 326 vaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.+. .++++++...|+.|..+|.. |+++-..+.-... + ..+..+ .|.+|+.++. +|.|.++|
T Consensus 275 p~~-~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~---~-~ssp~i--~g~~l~~~~~-----------~G~l~~~d 336 (377)
T TIGR03300 275 PAV-DDNRLYVTDADGVVVALDRRSGSELWKNDELKYR---Q-LTAPAV--VGGYLVVGDF-----------EGYLHWLS 336 (377)
T ss_pred ceE-eCCEEEEECCCCeEEEEECCCCcEEEccccccCC---c-cccCEE--ECCEEEEEeC-----------CCEEEEEE
Confidence 221 24554444449999999995 9987665321111 0 222222 4667887776 79999999
Q ss_pred CCCCeEEEEecCCC
Q 011452 405 ILTGKCLAKIRASN 418 (485)
Q Consensus 405 l~TGk~l~tl~gH~ 418 (485)
..+|+.+.+++.+.
T Consensus 337 ~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 337 REDGSFVARLKTDG 350 (377)
T ss_pred CCCCCEEEEEEcCC
Confidence 99999999998664
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-11 Score=125.21 Aligned_cols=202 Identities=10% Similarity=0.132 Sum_probs=132.9
Q ss_pred ceEEEEeCCCCeEEEEeeCCC---cEEEeecCCCeEE--EEEcCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCe
Q 011452 195 PGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTML--YSISDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~---tiKlWdl~~g~~l--~tl~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~ 268 (485)
+....|+ |||+.|++.+.+. .|.+||+.+|+.. ..+. ......+|||++. ++.+.+.++...|.++|+++|+
T Consensus 220 ~~~p~wS-PDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~ 297 (448)
T PRK04792 220 LMSPAWS-PDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA 297 (448)
T ss_pred ccCceEC-CCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC
Confidence 4467898 8999999876532 5888899888742 2222 2345789998665 5544444444568889998887
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEe-CCCc--EEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe--CCc
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENEN--LQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR--NRT 342 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~t--IkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s--D~T 342 (485)
. +.+..+.......+|+ |++..|+..+ .++. |.++|+.+++..+.. .++ .....+|+|||+.|+-.+ ++.
T Consensus 298 ~-~~lt~~~~~~~~p~wS-pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 298 L-TRITRHRAIDTEPSWH-PDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred e-EECccCCCCccceEEC-CCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECCCCCEEEEEEecCCc
Confidence 5 4455444455678886 7888888765 3444 555688888765542 333 334568999999988765 454
Q ss_pred EEE--EeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 343 VAV--WNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 343 Ikl--Wd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
..| +|+. |+. +.+.... . ..+..|+|||+.|+-.+.. +....|.++++ +|+....+..+.
T Consensus 374 ~~I~~~dl~~g~~-~~lt~~~-~-----d~~ps~spdG~~I~~~~~~--------~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 374 FNIARQDLETGAM-QVLTSTR-L-----DESPSVAPNGTMVIYSTTY--------QGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred eEEEEEECCCCCe-EEccCCC-C-----CCCceECCCCCEEEEEEec--------CCceEEEEEEC-CCCceEECcCCC
Confidence 444 6776 543 4444331 2 2345899999999877651 11235788886 688888887654
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.7e-11 Score=135.80 Aligned_cols=257 Identities=13% Similarity=0.112 Sum_probs=169.8
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-----C--e--EEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----Y--T--MLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-----g--~--~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklW 262 (485)
..+..++-+++++.+++|||.||||||||+.. + + +.|...+..|..|.+.+ +..+|++ ..|+.|++.
T Consensus 1049 ~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~---t~DG~v~~~ 1125 (1431)
T KOG1240|consen 1049 SAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS---TKDGSVRVL 1125 (1431)
T ss_pred ccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE---cCCCeEEEE
Confidence 33446677778889999999999999999752 1 1 33444567899999997 5566655 356899999
Q ss_pred ecCC--CeE-----EEEeecCC--cceeEEEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcC
Q 011452 263 SIED--GTV-----LKSFNHLL--HRNKKVDFIEQFNE-KLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLY 330 (485)
Q Consensus 263 di~t--G~~-----L~tl~~~~--~~~~~V~f~~~~~~-~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFsp 330 (485)
++.. ++- ....+.+. .-+.--+|...... .++.+-.-+-|-+||+++..-..+++ -..+.|++++.+|
T Consensus 1126 ~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp 1205 (1431)
T KOG1240|consen 1126 RIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP 1205 (1431)
T ss_pred EccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC
Confidence 9865 221 11111110 11112223222223 34445678899999999876544432 2345899999999
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEE---CCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYI---TSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svaf---SpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.++.++.|. -|.+-+||++ +.++.+.+ .|..+ ++-|.. .|....++|++. +.-+-|-+||
T Consensus 1206 ~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~-----i~~v~~~~~~~~~S~~vs~~~---------~~~nevs~wn 1271 (1431)
T KOG1240|consen 1206 WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAP-----IRHVWLCPTYPQESVSVSAGS---------SSNNEVSTWN 1271 (1431)
T ss_pred CceEEEEecCCceEEEEEeecCceeecccCcccCC-----cceEEeeccCCCCceEEEecc---------cCCCceeeee
Confidence 999999999 9999999999 99988775 22223 455544 445567888765 1357899999
Q ss_pred CCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 405 ILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 405 l~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.+|.|-.+|...++.|.+..+.-+++. . .+. ...+....+..-+..+++|+.|..||.||
T Consensus 1272 ~~~g~~~~vl~~s~~~p~ls~~~Ps~~~-----------------~-kp~-~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1272 METGLRQTVLWASDGAPILSYALPSNDA-----------------R-KPD-SLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred cccCcceEEEEcCCCCcchhhhcccccC-----------------C-CCC-cccceeeecccCCceeeecCCccceeecc
Confidence 9999999999887544444333222210 0 000 11333456666677899999999999998
Q ss_pred C
Q 011452 485 N 485 (485)
Q Consensus 485 ~ 485 (485)
.
T Consensus 1333 ~ 1333 (1431)
T KOG1240|consen 1333 P 1333 (1431)
T ss_pred C
Confidence 3
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.5e-12 Score=134.04 Aligned_cols=328 Identities=12% Similarity=0.126 Sum_probs=219.8
Q ss_pred cchhhhhhhccccccc---CcccccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCC
Q 011452 39 VNSVKKLQRREISSKR---DRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSG 115 (485)
Q Consensus 39 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dg 115 (485)
-++...|-.||++..+ .+++.+ .-+-+.+.|+.-+.-|..-+....|+.. |+.|+|+|.|.
T Consensus 101 w~~~~~l~~Re~gss~~f~~~~~~s---~~~vqr~~l~~kL~~H~GcVntV~FN~~-------------Gd~l~SgSDD~ 164 (559)
T KOG1334|consen 101 WQSGTALHQRELGSSSRFVYEACGS---RLFVQRLRLQKKLNKHKGCVNTVHFNQR-------------GDVLASGSDDL 164 (559)
T ss_pred cchhhHHHhhhcCchhHHHHHhhhh---HHHHHHhhhhhcccCCCCccceeeeccc-------------CceeeccCccc
Confidence 4567888899999442 223333 2333456677777777776666666666 99999999999
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeeccc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESL 192 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~~~ 192 (485)
++-+||-.+++....+..+|...|.---|=|+ -++|++.|+|| ++++-.| .+|+...+..+-.+ -
T Consensus 165 ~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dg----------qvr~s~i~~t~~~e~t~rl~~h--~ 232 (559)
T KOG1334|consen 165 QVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDG----------QVRVSEILETGYVENTKRLAPH--E 232 (559)
T ss_pred eEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccC----------ceeeeeeccccceecceecccc--c
Confidence 99999999888777777778776665556554 56788877543 6666655 56665444444444 3
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCee--EEEEecCCCeEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVP--LKILSIEDGTVL 270 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~t--IklWdi~tG~~L 270 (485)
+++.-++-.|-.-+.|-|++.|+.++=.|+..+.....+ ++- ..|.. |.|.+
T Consensus 233 g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~-----------------~cr--~~~~~~~v~L~~------- 286 (559)
T KOG1334|consen 233 GPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF-----------------VCR--EADEKERVGLYT------- 286 (559)
T ss_pred CccceeeecCCCCCcccccccccceeeeeeccCCcccee-----------------eee--ccCCccceeeee-------
Confidence 444444444334467889999999999998765422211 110 11111 22222
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE-----------Eecc-cCCCceEEEEEcC-CCcEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT-----------EVSR-TEFMTPSAFIFLY-ENQLFLT 337 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~-----------~~l~-gh~~~v~avaFsp-dg~llaS 337 (485)
++..|.....+++++.|.-+|++|.+.-..- ..+. .....|.+++|+. .+.+|||
T Consensus 287 ------------Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaS 354 (559)
T KOG1334|consen 287 ------------IAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLAS 354 (559)
T ss_pred ------------EecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeee
Confidence 1211222235666778888888887642211 1111 2234789999994 5556665
Q ss_pred EeCCcEEEEeCC---C----------cEEEE-eecCCCCCCCCCeeEE-EECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 338 FRNRTVAVWNFR---G----------ELVTS-FEDHLLWHPDCNTNNI-YITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 338 ~sD~TIklWd~~---G----------~ll~t-l~gH~~~~~~~~v~sv-afSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
-+|--|-|.+-. | .++.- ++||.+. ..|..| .|-|...|++|||+ =|-|=|
T Consensus 355 YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~---~TVKgVNFfGPrsEyVvSGSD-----------CGhIFi 420 (559)
T KOG1334|consen 355 YNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS---RTVKGVNFFGPRSEYVVSGSD-----------CGHIFI 420 (559)
T ss_pred ecccceEEeccccccCCCCCCCcchhhccchhhcccccc---cccceeeeccCccceEEecCc-----------cceEEE
Confidence 569999999763 5 34444 8899865 224555 46789999999995 589999
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
|+-.+|+.|+-++|... -|.+|-=+|--..|||.+-|.-|||
T Consensus 421 W~K~t~eii~~MegDr~--------------------------------------VVNCLEpHP~~PvLAsSGid~DVKI 462 (559)
T KOG1334|consen 421 WDKKTGEIIRFMEGDRH--------------------------------------VVNCLEPHPHLPVLASSGIDHDVKI 462 (559)
T ss_pred EecchhHHHHHhhcccc--------------------------------------eEeccCCCCCCchhhccCCccceee
Confidence 99999999999988541 7889998999999999999999999
Q ss_pred cc
Q 011452 483 WS 484 (485)
Q Consensus 483 Wd 484 (485)
|-
T Consensus 463 WT 464 (559)
T KOG1334|consen 463 WT 464 (559)
T ss_pred ec
Confidence 94
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.9e-09 Score=108.67 Aligned_cols=277 Identities=14% Similarity=0.166 Sum_probs=174.3
Q ss_pred EEEEEeCC----CeEEeeec--ccCcEE--EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-
Q 011452 107 IVFALAQS----GVCAAFCR--ETNQRI--CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR- 177 (485)
Q Consensus 107 ~ias~s~d----gtiklW~~--~tG~~l--~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~- 177 (485)
+++.+++. +.|..|.. ++|++- ..+.. ...-.-|+++|+++.|-++...+... ..+..+.+..
T Consensus 1 ~~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~------g~v~~~~i~~~ 72 (345)
T PF10282_consen 1 TLYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDS------GGVSSYRIDPD 72 (345)
T ss_dssp EEEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTT------TEEEEEEEETT
T ss_pred CEEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCC------CCEEEEEECCC
Confidence 35666666 78888887 556643 22222 22346689999999998877532122 3555555532
Q ss_pred -CCcCcccceeee-c-cccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-CeEEEE---Ec------------CCcEE
Q 011452 178 -GKPDAGFALFES-E-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---IS------------DKNVQ 237 (485)
Q Consensus 178 -G~~~~~~~lf~~-~-~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~~l~t---l~------------~~~V~ 237 (485)
|++. +... . ....|-.|+++ |+|++|..+. .+++|-++++.. |++... +. .....
T Consensus 73 ~g~L~----~~~~~~~~g~~p~~i~~~-~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H 147 (345)
T PF10282_consen 73 TGTLT----LLNSVPSGGSSPCHIAVD-PDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH 147 (345)
T ss_dssp TTEEE----EEEEEEESSSCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE
T ss_pred cceeE----EeeeeccCCCCcEEEEEe-cCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce
Confidence 5652 1221 1 23456689998 7899888776 599999999986 664332 21 13578
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCe--EE--EEeec-CCcceeEEEEEecCCCEEEEE-eCCCcEEEEECC--C
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGT--VL--KSFNH-LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--N 309 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~--~L--~tl~~-~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~--t 309 (485)
.|.|+|++..+....-.. ..|.++++..+. +. ..+.- ....-+.++|+ |++.++.+. ..+++|-++++. +
T Consensus 148 ~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~-pdg~~~Yv~~e~s~~v~v~~~~~~~ 225 (345)
T PF10282_consen 148 QVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS-PDGKYAYVVNELSNTVSVFDYDPSD 225 (345)
T ss_dssp EEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE--TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred eEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc-CCcCEEEEecCCCCcEEEEeecccC
Confidence 999999765444433333 478898887655 32 23321 11233578997 677777665 589999999998 5
Q ss_pred Cee--EEecc----c--CCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC---CcE--EEEeecCCCCCCCCCeeEEEEC
Q 011452 310 FEL--TEVSR----T--EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 310 g~~--~~~l~----g--h~~~v~avaFspdg~llaS~s--D~TIklWd~~---G~l--l~tl~gH~~~~~~~~v~svafS 374 (485)
+.+ ++... + .......++++|||++|..+. +.+|-+++++ |++ +..+.-...+ -+.++|+
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~-----Pr~~~~s 300 (345)
T PF10282_consen 226 GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKF-----PRHFAFS 300 (345)
T ss_dssp TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSS-----EEEEEE-
T ss_pred CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCC-----ccEEEEe
Confidence 543 22221 1 123789999999999876665 8899999993 554 2333221222 5799999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEeC--CCCeEEEE
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISNI--LTGKCLAK 413 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl--~TGk~l~t 413 (485)
|||++|+.++.+ +++|.++++ .||++..+
T Consensus 301 ~~g~~l~Va~~~----------s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 301 PDGRYLYVANQD----------SNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp TTSSEEEEEETT----------TTEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEecC----------CCeEEEEEEeCCCCcEEEe
Confidence 999999999863 689999976 68876544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.7e-10 Score=122.12 Aligned_cols=325 Identities=16% Similarity=0.205 Sum_probs=216.9
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCC--CCccccee---
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD--NFSSLRCR--- 168 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~--d~stL~~~--- 168 (485)
-+|..+.+| |.+||+. +-.-|.+|.-..+-.|..+. |. -|+-+.|||++++|.+=+.-.-. +....+..
T Consensus 33 ~p~~~~~~SP~G~~l~~~-~~~~V~~~~g~~~~~l~~~~--~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n 108 (561)
T COG5354 33 WPVAYVSESPLGTYLFSE-HAAGVECWGGPSKAKLVRFR--HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN 108 (561)
T ss_pred cchhheeecCcchheehh-hccceEEccccchhheeeee--cC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence 345566666 7766654 55668899866554444332 44 49999999999999886642220 11111112
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE----EEEEcCCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSISDKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~----l~tl~~~~V~~VafSpg 244 (485)
...+||+..|++..++..-..-.++|+ .+.|+ -|.+++|--. -..++|.++ ++.+ ...+.-..|.+..|||.
T Consensus 109 ~~~vwd~~sg~iv~sf~~~~q~~~~Wp-~~k~s-~~D~y~ARvv-~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~ 184 (561)
T COG5354 109 NVFVWDIASGMIVFSFNGISQPYLGWP-VLKFS-IDDKYVARVV-GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPE 184 (561)
T ss_pred ceeEEeccCceeEeeccccCCcccccc-eeeee-ecchhhhhhc-cCeEEEEec-CCccccCchhhccccceeeEEecCC
Confidence 588999999998544333333334664 67887 5777777663 456888887 5542 23344468999999996
Q ss_pred c---eEEEEE--cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE------e-----CCCcEEEEECC
Q 011452 245 I---MLLIFT--KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK------Q-----ENENLQILDVR 308 (485)
Q Consensus 245 ~---~ll~ss--s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~------s-----~D~tIkIWDv~ 308 (485)
+ .|+.-. ....+.+++||.|.-+..|.+-+-..-..-.+.+. +.|+.|+.- + ...++.|.+++
T Consensus 185 ~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~-~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~ 263 (561)
T COG5354 185 GNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQ-VLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT 263 (561)
T ss_pred CCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEe-cCCceEEEEEEEeeecccceeccceEEEEeec
Confidence 2 223222 22345789999999888876543211111234444 346666541 1 34789999998
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe---CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
... +.+..+-.+.|-.++|.|.++.|+..+ +.++.+.|++|.++..+.... =+.+.|||.+.+|+.++.
T Consensus 264 e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~-------rNT~~fsp~~r~il~agF 335 (561)
T COG5354 264 ERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQK-------RNTIFFSPHERYILFAGF 335 (561)
T ss_pred ccc-cceeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCcc-------cccccccCcccEEEEecC
Confidence 443 444435578999999999999998765 889999999999877664332 478999999999999887
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCe-EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE
Q 011452 386 ADSDDPLAEGNAGSINISNILTGK-CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY 464 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f 464 (485)
+ ---|.|-+||..... |+.++.|-+ -+-+.|
T Consensus 336 ~--------nl~gni~i~~~~~rf~~~~~~~~~n----------------------------------------~s~~~w 367 (561)
T COG5354 336 D--------NLQGNIEIFDPAGRFKVAGAFNGLN----------------------------------------TSYCDW 367 (561)
T ss_pred C--------ccccceEEeccCCceEEEEEeecCC----------------------------------------ceEeec
Confidence 2 124789999987543 444776643 123689
Q ss_pred cCCCCEEEEec------CCCcEEEccC
Q 011452 465 DEDRNEIYTGN------RHGLVHVWSN 485 (485)
Q Consensus 465 spDg~~LaSgs------~DgtVklWd~ 485 (485)
||||+.+.+.- .|..|+|||+
T Consensus 368 spd~qF~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 368 SPDGQFYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred cCCceEEEecCCCcccccCcceEEEEe
Confidence 99999998874 5899999984
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-10 Score=119.39 Aligned_cols=201 Identities=12% Similarity=0.103 Sum_probs=126.9
Q ss_pred EEEEeCCCCeE--EEEeeC-C--CcEEEeecCCCeE--EEEEcCCcEEEEEEcCCceEEEEEc-C--CCCeeEEEEecCC
Q 011452 197 FVEFDDVNGKV--LTYSAQ-D--SIYKVFDLKNYTM--LYSISDKNVQEIKISPGIMLLIFTK-A--SGHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~pnG~~--Las~s~-D--~tiKlWdl~~g~~--l~tl~~~~V~~VafSpg~~ll~sss-~--~~D~tIklWdi~t 266 (485)
+-+|+ |||+. +++-|. + ..|-+.++.+|+. +..+.+ .....+|||+|..++..+ . ..|..+.+|++.+
T Consensus 189 sP~wS-PDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g-~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~ 266 (428)
T PRK01029 189 TPTWM-HIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQG-NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET 266 (428)
T ss_pred cceEc-cCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCC-CccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence 45787 79875 433332 3 3566778888763 333333 455689999774444433 2 2245666788876
Q ss_pred C---eEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEEC--CC-CeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 267 G---TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDV--RN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 267 G---~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv--~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
| +..+...++.+.....+|+ |||.+|+..+ .++..+||.+ .. +...+.+..+...+....|||||+.|+..+
T Consensus 267 g~~g~~~~lt~~~~~~~~~p~wS-PDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 267 GAIGKPRRLLNEAFGTQGNPSFS-PDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CCCCcceEeecCCCCCcCCeEEC-CCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 3 4333333332344577886 7888888875 5777777754 32 233444444555667889999999998765
Q ss_pred -C---CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 340 -N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 340 -D---~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+ ..|.+||+. |++ +.+...... +.+..|+|||+.|+-.+. ......|.+||+.+|+.....
T Consensus 346 ~~~g~~~I~v~dl~~g~~-~~Lt~~~~~-----~~~p~wSpDG~~L~f~~~--------~~g~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 346 VIKGVRQICVYDLATGRD-YQLTTSPEN-----KESPSWAIDSLHLVYSAG--------NSNESELYLISLITKKTRKIV 411 (428)
T ss_pred cCCCCcEEEEEECCCCCe-EEccCCCCC-----ccceEECCCCCEEEEEEC--------CCCCceEEEEECCCCCEEEee
Confidence 2 369999997 554 445433222 578999999999885543 122467999999888764443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=120.41 Aligned_cols=256 Identities=13% Similarity=0.134 Sum_probs=170.0
Q ss_pred cCEEEEEeC----CCeEEe--eecccCcEEEEeecCCcccEEEEEEeeCC-----CEEEEEEeecCCCCcccceeEEEEe
Q 011452 105 RDIVFALAQ----SGVCAA--FCRETNQRICFLNVTADEVIRSLFYNKNN-----DSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ias~s~----dgtikl--W~~~tG~~l~tl~g~~~~~i~sv~~spdg-----~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
+..||.||. ...+.+ .+-++|+.+..-+.-|.-++..+-|.|+- +.|||.| | ..|||
T Consensus 59 ~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~-----D-------~LRlW 126 (364)
T KOG0290|consen 59 KFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS-----D-------FLRLW 126 (364)
T ss_pred ceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc-----C-------eEEEE
Confidence 455555553 233333 23456777776666677889999999987 5788744 3 78899
Q ss_pred Eec--cCCcCcccceeee----ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--E---EEEcCCcEEEEEEc
Q 011452 174 YIR--RGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--L---YSISDKNVQEIKIS 242 (485)
Q Consensus 174 ~i~--~G~~~~~~~lf~~----~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l---~tl~~~~V~~VafS 242 (485)
.+- .++... +.++.. +.-....+..+...|-.+|.++|-|-|.-|||+++|.- + ..-|+.+|.+|+|+
T Consensus 127 ri~~ee~~~~~-~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~ 205 (364)
T KOG0290|consen 127 RIGDEESRVEL-QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFL 205 (364)
T ss_pred eccCcCCceeh-hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEec
Confidence 874 333310 001111 11111123344455668999999999999999998732 2 22368899999999
Q ss_pred CCc-eEEEEEcCCCCeeEEEEecCCCeEEEEe--ecC--CcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCC-eeEEe
Q 011452 243 PGI-MLLIFTKASGHVPLKILSIEDGTVLKSF--NHL--LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNF-ELTEV 315 (485)
Q Consensus 243 pg~-~ll~sss~~~D~tIklWdi~tG~~L~tl--~~~--~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg-~~~~~ 315 (485)
-|+ .+.++ -+.|+.+|++|+..-+ .-|+ +.- ....-.+++..+|..++++= -+...|.|.|++.- ..+..
T Consensus 206 ~~s~~~FAS--vgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~ 282 (364)
T KOG0290|consen 206 KGSRDVFAS--VGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVAR 282 (364)
T ss_pred cCccceEEE--ecCCCcEEEEEecccc-cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceeh
Confidence 643 33334 3556999999986522 1122 111 12234677777777777764 46688999999974 56888
Q ss_pred cccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC--Cc-------EEEEeecCCCCCCCCCeeEEEECC-CCCEEEEE
Q 011452 316 SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GE-------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISY 383 (485)
Q Consensus 316 l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~--G~-------ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~ 383 (485)
|++|...|++++|.|.. ..+.|++ |..+-|||++ .. +..+ .+|. ||.|.++| .++.|+.+
T Consensus 283 L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~E-------VNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 283 LRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGE-------VNQIQWSSSQPDWIAIC 354 (364)
T ss_pred hhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccce-------eeeeeecccCCCEEEEE
Confidence 99999999999999865 5678888 9999999984 32 2233 2333 99999995 67888877
Q ss_pred e
Q 011452 384 C 384 (485)
Q Consensus 384 s 384 (485)
.
T Consensus 355 ~ 355 (364)
T KOG0290|consen 355 F 355 (364)
T ss_pred e
Confidence 6
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.6e-10 Score=126.41 Aligned_cols=268 Identities=14% Similarity=0.146 Sum_probs=175.6
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC--eEEEEeeCCC
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG--KVLTYSAQDS 215 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG--~~Las~s~D~ 215 (485)
.-.--.||+|++.|+... .+ +++|+...+|++.. .+. ++....-.+.+.+..- -++-.++.||
T Consensus 18 ~~~~avfSnD~k~l~~~~----~~-------~V~VyS~~Tg~~i~---~l~-~~~a~l~s~~~~~~~~~~~~~~~~sl~G 82 (792)
T KOG1963|consen 18 NKSPAVFSNDAKFLFLCT----GN-------FVKVYSTATGECIT---SLE-DHTAPLTSVIVLPSSENANYLIVCSLDG 82 (792)
T ss_pred eecccccccCCcEEEEee----CC-------EEEEEecchHhhhh---hcc-cccCccceeeecCCCccceEEEEEecCc
Confidence 334457899999998855 34 89999999999832 233 3455555777764323 4566899999
Q ss_pred cEEEeecCCCeEEEEEc-CCcEEEEEEcCCce---EEEEEcCCCCeeEEEEe---cCCCeEE-----EE--------eec
Q 011452 216 IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM---LLIFTKASGHVPLKILS---IEDGTVL-----KS--------FNH 275 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~---ll~sss~~~D~tIklWd---i~tG~~L-----~t--------l~~ 275 (485)
+|++||...+.++.++. +-.|.+..+.|-.+ ...+.+.. ..++.. .+.++.. .+ ++.
T Consensus 83 ~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~---~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 83 TIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVE---DYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecc---cceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 99999999999999986 33565555544111 11111111 111111 1111111 11 111
Q ss_pred CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-----cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-----SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-----l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
|.- -..|.+. +. +....--.+..+-+|++.++. ..+ -..|+..+.+++|||.++.+|++- ||.|.+|.--
T Consensus 160 ~~~-~~~I~~~-~~-ge~~~i~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~ 235 (792)
T KOG1963|consen 160 HQE-PKSIVDN-NS-GEFKGIVHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF 235 (792)
T ss_pred hcC-CccEEEc-CC-ceEEEEEEeeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc
Confidence 111 1233332 21 222222367788999998755 222 245777789999999999999998 9999999854
Q ss_pred C-----cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 350 G-----ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 350 G-----~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
| +-.+.|- ||.+. |++++||+||-+|.||+. .|-.-+|.+.|++ ++|-.-=+
T Consensus 236 ~~~~~~~t~t~lH----WH~~~-V~~L~fS~~G~~LlSGG~-----------E~VLv~Wq~~T~~--kqfLPRLg----- 292 (792)
T KOG1963|consen 236 GSSDDSETCTLLH----WHHDE-VNSLSFSSDGAYLLSGGR-----------EGVLVLWQLETGK--KQFLPRLG----- 292 (792)
T ss_pred ccccccccceEEE----ecccc-cceeEEecCCceEeeccc-----------ceEEEEEeecCCC--cccccccC-----
Confidence 4 2234443 44443 899999999999999987 7999999999988 34432111
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
..|..+.+|||+...+.--.|+.|+|
T Consensus 293 --------------------------------s~I~~i~vS~ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 293 --------------------------------SPILHIVVSPDSDLYSLVLEDNQIHL 318 (792)
T ss_pred --------------------------------CeeEEEEEcCCCCeEEEEecCceEEE
Confidence 28999999999999888888998886
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.8e-10 Score=117.28 Aligned_cols=283 Identities=9% Similarity=0.018 Sum_probs=172.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
|.+++..+.||.+.++|+.+++.+.++..+.+ -+++++||||++|+.+... . .++.|.|.++.++.+..
T Consensus 48 gr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~~v~n~~--~-------~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 48 GRYLYVANRDGTVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYVYVANYE--P-------GTVSVIDAETLEPVKTI 116 (369)
T ss_dssp SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEEEEEEEE--T-------TEEEEEETTT--EEEEE
T ss_pred CCEEEEEcCCCeEEEEECCcccEEEEEecCCC--cceEEEcCCCCEEEEEecC--C-------CceeEeccccccceeec
Confidence 88999999999999999999999999987543 6999999999999876542 2 47888887777663221
Q ss_pred ceeeec---cccCceEEEEeCCCCeEEEEeeCC-CcEEEeecCCCeEE--EEEc-CCcEEEEEEcCCceE-EEEEcCCCC
Q 011452 185 ALFESE---SLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTML--YSIS-DKNVQEIKISPGIML-LIFTKASGH 256 (485)
Q Consensus 185 ~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~D-~tiKlWdl~~g~~l--~tl~-~~~V~~VafSpg~~l-l~sss~~~D 256 (485)
+.-... .-..+..|..+ |....++..-.| +.|-+=|..+.+.+ ..+. +..-.+..|+|++++ ++++..+
T Consensus 117 ~~~~~~~~~~~~Rv~aIv~s-~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~s-- 193 (369)
T PF02239_consen 117 PTGGMPVDGPESRVAAIVAS-PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGS-- 193 (369)
T ss_dssp E--EE-TTTS---EEEEEE--SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGG--
T ss_pred ccccccccccCCCceeEEec-CCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeeccccc--
Confidence 111110 00122355565 456644444444 44444465554422 3443 457788999987654 4444433
Q ss_pred eeEEEEecCCCeEEEEee-cCCc---cee-------EEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 257 VPLKILSIEDGTVLKSFN-HLLH---RNK-------KVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~-~~~~---~~~-------~V~f~~~~~~~ll-s~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
..|-++|.++++....+. +... +.. ..-|.....+..+ +.-....+.+||..+.+.++.+...... -
T Consensus 194 n~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-l 272 (369)
T PF02239_consen 194 NKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-L 272 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--
T ss_pred ceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-c
Confidence 589999999999887664 1111 111 1112111111222 2222336668999999999988766544 5
Q ss_pred EEEEcCCCcEEEEE---e--CCcEEEEeCC-CcEEEEeecCCC-CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 325 AFIFLYENQLFLTF---R--NRTVAVWNFR-GELVTSFEDHLL-WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 325 avaFspdg~llaS~---s--D~TIklWd~~-G~ll~tl~gH~~-~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
-+.-+|+++++... + .++|.|+|.+ -+.+.++..... . +.-+.|++||+.+--+..+ .+
T Consensus 273 Fi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~-----~~h~ef~~dG~~v~vS~~~---------~~ 338 (369)
T PF02239_consen 273 FIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKR-----VVHMEFNPDGKEVWVSVWD---------GN 338 (369)
T ss_dssp -EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT-------EEEEEE-TTSSEEEEEEE-----------T
T ss_pred eeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCc-----EeccEECCCCCEEEEEEec---------CC
Confidence 56679999999988 3 5899999997 788888863322 2 6789999999988776662 24
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 011452 398 GSINISNILTGKCLAKIRA 416 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~g 416 (485)
+.|.++|..|.++++.|..
T Consensus 339 ~~i~v~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 339 GAIVVYDAKTLKEKKRIPV 357 (369)
T ss_dssp TEEEEEETTTTEEEEEEE-
T ss_pred CEEEEEECCCcEEEEEEEe
Confidence 5999999999999999984
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.3e-09 Score=109.63 Aligned_cols=267 Identities=12% Similarity=0.113 Sum_probs=168.6
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEee------cCCCCcccceeEEEEeEeccCCcCcccce--
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVY------ASDNFSSLRCRSTRIEYIRRGKPDAGFAL-- 186 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d------~~~d~stL~~~t~~lw~i~~G~~~~~~~l-- 186 (485)
+++.+.|.++++.+.++..+..- +-+ +||||+.|..+..+ |.++ ..+.++|+.++++....++
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~------d~V~v~D~~t~~~~~~i~~p~ 97 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRT------DYVEVIDPQTHLPIADIELPE 97 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCC------CEEEEEECccCcEEeEEccCC
Confidence 89999999999999999875443 234 99999999887741 1122 4899999999887433332
Q ss_pred ---eeeccccCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 187 ---FESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 187 ---f~~~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
|. ....+..++++ |||+.|.-.- .+..|-|.|+.+++.+..+. .....-+..+++...+.+ .+. ..++
T Consensus 98 ~p~~~--~~~~~~~~~ls-~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~-~Dg--~~~~ 171 (352)
T TIGR02658 98 GPRFL--VGTYPWMTSLT-PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHC-RDG--SLAK 171 (352)
T ss_pred Cchhh--ccCccceEEEC-CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEe-ecC--ceEE
Confidence 11 13445578998 7999876443 38999999999999988885 222222333222211111 000 1111
Q ss_pred EEecCCCeEE-EE---eecCCcc--eeEEEEEecCCCEEEEEeCCCcEEEEECCC-----CeeEEecccC-------CCc
Q 011452 261 ILSIEDGTVL-KS---FNHLLHR--NKKVDFIEQFNEKLLVKQENENLQILDVRN-----FELTEVSRTE-------FMT 322 (485)
Q Consensus 261 lWdi~tG~~L-~t---l~~~~~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-----g~~~~~l~gh-------~~~ 322 (485)
+=.=.+|+.. ++ |.+-... ... .|.+.++..+-++.+ ++|.+-|+.. .+...++.-. ...
T Consensus 172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP-~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g 249 (352)
T TIGR02658 172 VGYGTKGNPKIKPTEVFHPEDEYLINHP-AYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGG 249 (352)
T ss_pred EEecCCCceEEeeeeeecCCccccccCC-ceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCc
Confidence 1111233321 11 1110000 011 344335655555656 9999999543 3444433211 122
Q ss_pred eEEEEEcCCCcEEEEEe-----------CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEEEecCCC
Q 011452 323 PSAFIFLYENQLFLTFR-----------NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADS 388 (485)
Q Consensus 323 v~avaFspdg~llaS~s-----------D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~ 388 (485)
+..++++|||+++.... .++|.++|.. ++.+..+. |+. +++|+|||||+ +|...+.
T Consensus 250 ~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~-------~~~iavS~Dgkp~lyvtn~--- 319 (352)
T TIGR02658 250 WQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHE-------IDSINVSQDAKPLLYALST--- 319 (352)
T ss_pred ceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCc-------eeeEEECCCCCeEEEEeCC---
Confidence 23399999988776632 2589999995 99888776 654 78999999999 8887764
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.+++|-+.|+.+++.++++.
T Consensus 320 -------~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 320 -------GDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -------CCCcEEEEECcCCeEEeeec
Confidence 26899999999999999984
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=128.16 Aligned_cols=254 Identities=12% Similarity=0.162 Sum_probs=158.0
Q ss_pred ccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEE--------eeCCCEEEEEEeecCCCCc
Q 011452 93 RKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFY--------NKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 93 ~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~--------spdg~~Las~S~d~~~d~s 163 (485)
|+...|..+..+ .+-+...+.|..+-+|+-.+......++. +++.|...-+ -..++.++..|.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~-p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DG----- 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKL-PDDFVPTDMHLGGRSSGGGKGSDTLLICSNDG----- 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhC-CcccCCccccccccccCCCCCcceEEEEcCCc-----
Confidence 455556667776 34444444455555554333433333333 3333322222 22345566655433
Q ss_pred ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEE
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKI 241 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~Vaf 241 (485)
.+.|-. +.|+.... .. .|-+.+.+-.++ |||.-|.+++.||.||+|. ++|-+..++- +..|.++++
T Consensus 86 -----kf~il~-k~~rVE~s---v~-AH~~A~~~gRW~-~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W 153 (737)
T KOG1524|consen 86 -----RFVILN-KSARVERS---IS-AHAAAISSGRWS-PDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARW 153 (737)
T ss_pred -----eEEEec-ccchhhhh---hh-hhhhhhhhcccC-CCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEE
Confidence 222323 45554210 00 122323334576 7999999999999999998 5665545553 358999999
Q ss_pred cCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC
Q 011452 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 242 Spg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
-|+.--+.++.+ ++..||=.-.. -+.+ ..+.|.+-+-+++|++ ....++++++|...||||-. |..+-+...|..
T Consensus 154 ~p~S~~vl~c~g-~h~~IKpL~~n-~k~i-~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 154 APNSNSIVFCQG-GHISIKPLAAN-SKII-RWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY 228 (737)
T ss_pred CCCCCceEEecC-CeEEEeecccc-ccee-EEeccCcEEEEeecCc-cccceeecCCceeEEeeccc-CcccccCChhcc
Confidence 984433333332 23455544332 1222 3456778889999985 46788899999999999988 666777778999
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.+.+|+|.|| ++++-+|-+|.+ |+.-.. +.|.++++||||..++.|+.
T Consensus 229 ~ITSva~npd-~~~~v~S~nt~R-----------~~~p~~----GSifnlsWS~DGTQ~a~gt~ 276 (737)
T KOG1524|consen 229 AITSVAFNPE-KDYLLWSYNTAR-----------FSSPRV----GSIFNLSWSADGTQATCGTS 276 (737)
T ss_pred ceeeeeeccc-cceeeeeeeeee-----------ecCCCc----cceEEEEEcCCCceeecccc
Confidence 9999999999 888877755665 222111 22899999999999999885
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.36 E-value=2e-09 Score=112.14 Aligned_cols=262 Identities=13% Similarity=0.127 Sum_probs=161.7
Q ss_pred cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC----------CCcEEEeecCCCeEEEEEc
Q 011452 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----------DSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 163 stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~----------D~tiKlWdl~~g~~l~tl~ 232 (485)
.++. .++.+-|..+++... .+..+ ..|..+ ++ |||+.|..+.. +..|.|||+++++.+..+.
T Consensus 23 ~~~~-~~v~ViD~~~~~v~g---~i~~G--~~P~~~-~s-pDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~ 94 (352)
T TIGR02658 23 FAAT-TQVYTIDGEAGRVLG---MTDGG--FLPNPV-VA-SDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIE 94 (352)
T ss_pred cccC-ceEEEEECCCCEEEE---EEEcc--CCCcee-EC-CCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEc
Confidence 3344 566676776666522 22222 233445 87 78887766654 8999999999999998885
Q ss_pred C---------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE--------EecCCCEEEE
Q 011452 233 D---------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF--------IEQFNEKLLV 295 (485)
Q Consensus 233 ~---------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f--------~~~~~~~lls 295 (485)
- ..-..+++||++++|.-+..+.+..|-+.|+++++.++++.- ..-..+.- ...|+..+-.
T Consensus 95 ~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v--p~~~~vy~t~e~~~~~~~~Dg~~~~v 172 (352)
T TIGR02658 95 LPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV--PDCYHIFPTANDTFFMHCRDGSLAKV 172 (352)
T ss_pred cCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC--CCCcEEEEecCCccEEEeecCceEEE
Confidence 1 234579999987766544445568999999999999998862 11011110 0122332222
Q ss_pred Ee-CCCcEEEEECCCCeeEEecccCC----CceEEEEEcC-CCcEEEEEeCCcEEEEeCCC------cEEEEeecC---C
Q 011452 296 KQ-ENENLQILDVRNFELTEVSRTEF----MTPSAFIFLY-ENQLFLTFRNRTVAVWNFRG------ELVTSFEDH---L 360 (485)
Q Consensus 296 ~s-~D~tIkIWDv~tg~~~~~l~gh~----~~v~avaFsp-dg~llaS~sD~TIklWd~~G------~ll~tl~gH---~ 360 (485)
.. .+++.+ ..+ ..++.+.. ..+ .|++ ||+++-.+..|+|.+=|+.+ +.+.+++.. .
T Consensus 173 ~~d~~g~~~---~~~---~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~ 243 (352)
T TIGR02658 173 GYGTKGNPK---IKP---TEVFHPEDEYLINHP---AYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKAD 243 (352)
T ss_pred EecCCCceE---Eee---eeeecCCccccccCC---ceEcCCCcEEEEecCCeEEEEecCCCcceecceeeecccccccc
Confidence 21 333322 010 11111100 222 4556 77777555569999999643 233333322 2
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
.|.|.+ ..-++++|||++|.-......+. --....+.|-++|..|++.+..+.--.
T Consensus 244 ~wrP~g-~q~ia~~~dg~~lyV~~~~~~~~-thk~~~~~V~ViD~~t~kvi~~i~vG~---------------------- 299 (352)
T TIGR02658 244 GWRPGG-WQQVAYHRARDRIYLLADQRAKW-THKTASRFLFVVDAKTGKRLRKIELGH---------------------- 299 (352)
T ss_pred ccCCCc-ceeEEEcCCCCEEEEEecCCccc-cccCCCCEEEEEECCCCeEEEEEeCCC----------------------
Confidence 577776 35699999999998754210000 000123689999999999999987421
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEcc
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd 484 (485)
.+++|+|||||+ .||..+ .+++|.+-|
T Consensus 300 -----------------~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 300 -----------------EIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred -----------------ceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 788999999999 999888 578888765
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-10 Score=127.36 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=169.1
Q ss_pred ccceEEEEEe---cCEEEEEeCCCeEEeeecccCcE-----EEEeecCCcccEEEEEEeeC--CCEEEEEEeecCCCCcc
Q 011452 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQR-----ICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSS 164 (485)
Q Consensus 95 ~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~-----l~tl~g~~~~~i~sv~~spd--g~~Las~S~d~~~d~st 164 (485)
+++|..+.|+ ..+||.|+++|.|-+||+..++. ++.+-..|.+.+..+.+-++ +.-++++|.||
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG------ 315 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDG------ 315 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCC------
Confidence 5788889988 89999999999999999887775 66777789999999999555 44489988644
Q ss_pred cceeEEEEeEecc------CCcCccccee--eeccccC--ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe----EEEE
Q 011452 165 LRCRSTRIEYIRR------GKPDAGFALF--ESESLKW--PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYS 230 (485)
Q Consensus 165 L~~~t~~lw~i~~------G~~~~~~~lf--~~~~~~~--~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~----~l~t 230 (485)
.+..|+++. +.+.. ... ..+.... .-.++|-+-+=..+.-|+.+|.|--=+-+.++ .++.
T Consensus 316 ----~i~~W~~~~l~~P~e~~~~~--~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 316 ----SICSWDTDMLSLPVEGLLLE--SKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred ----cEeeeeccccccchhhcccc--cccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 777887621 11110 001 0000111 22578865455566778888888763333222 2223
Q ss_pred ------EcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcE
Q 011452 231 ------ISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 231 ------l~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tI 302 (485)
.+...|..|.++| .-.+..++. |-++|||+-. .-..|..+..+...+.+|+|++-....++++-.||+|
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~g---DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l 466 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVG---DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNL 466 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeec---cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCce
Confidence 3456899999999 555554433 4799999976 5567777777777899999997666777778899999
Q ss_pred EEEECCCCe--eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 303 QILDVRNFE--LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 303 kIWDv~tg~--~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
-|||+.... .+....-+......+.|++.|++|+.|. .|+|.+|++.
T Consensus 467 ~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 467 DIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred ehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 999998543 3333333444556677888899999999 9999999984
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.6e-12 Score=132.57 Aligned_cols=225 Identities=18% Similarity=0.168 Sum_probs=174.1
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiK 218 (485)
=+.+-|+.||..|+.++.- +.+-..|..++++ .|+....--+..|.|- .|-+++|- ++-+-+.
T Consensus 132 PY~~~ytrnGrhlllgGrK----------GHlAa~Dw~t~~L-----~~Ei~v~Etv~Dv~~L-Hneq~~AV-AQK~y~y 194 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRK----------GHLAAFDWVTKKL-----HFEINVMETVRDVTFL-HNEQFFAV-AQKKYVY 194 (545)
T ss_pred CeeeeecCCccEEEecCCc----------cceeeeeccccee-----eeeeehhhhhhhhhhh-cchHHHHh-hhhceEE
Confidence 4788999999999875532 2444557788887 4554222224478885 57788774 5788888
Q ss_pred EeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe
Q 011452 219 VFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 219 lWdl~~g~~l~tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s 297 (485)
|+| ..|++++-+.. ..|..+.|-|-..||++++.. +-++--|+.+|++...|..-.+.+..+.-. |-+..+=.|.
T Consensus 195 vYD-~~GtElHClk~~~~v~rLeFLPyHfLL~~~~~~--G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN-P~NaVih~Gh 270 (545)
T KOG1272|consen 195 VYD-NNGTELHCLKRHIRVARLEFLPYHFLLVAASEA--GFLKYQDVSTGKLVASIRTGAGRTDVMKQN-PYNAVIHLGH 270 (545)
T ss_pred Eec-CCCcEEeehhhcCchhhhcccchhheeeecccC--CceEEEeechhhhhHHHHccCCccchhhcC-CccceEEEcC
Confidence 999 68999999875 589999999999999887655 799999999999998887544555444433 5566667788
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEEC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYIT 374 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafS 374 (485)
..|||-+|.....+.+.-+--|...|+++|+.|+|+++||++ |+.+||||++ -..+.++.- |. ...++||
T Consensus 271 snGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~-------a~~ls~S 343 (545)
T KOG1272|consen 271 SNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP-------ASNLSLS 343 (545)
T ss_pred CCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCC-------ccccccc
Confidence 999999999999998877778999999999999999999999 9999999997 444444433 32 5789999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
.-|-+.+|.+ .-|.||-
T Consensus 344 qkglLA~~~G-------------~~v~iw~ 360 (545)
T KOG1272|consen 344 QKGLLALSYG-------------DHVQIWK 360 (545)
T ss_pred cccceeeecC-------------Ceeeeeh
Confidence 9987777765 3688894
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=120.37 Aligned_cols=249 Identities=15% Similarity=0.146 Sum_probs=171.1
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC------CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~------g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
+|.+-+.+++|+ .||+.||||+.|.-++||++.. .+.+... |..+|.+++|.-+...+.++ ..+++|-
T Consensus 54 ~H~GCiNAlqFS-~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG--~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFS-HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG--ERWGTVI 130 (609)
T ss_pred hhccccceeeec-cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC--CCcceeE
Confidence 456667789998 6899999999999999999752 2333322 12589999999888887764 4568999
Q ss_pred EEecCCCeEEEEeecCC--cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEE--ecccCCCceEEEEEcCCC-cE
Q 011452 261 ILSIEDGTVLKSFNHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTE--VSRTEFMTPSAFIFLYEN-QL 334 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~--~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~--~l~gh~~~v~avaFspdg-~l 334 (485)
+-|+++-+.|..+++.. +.|+.+.-+ |-+..+++.+.|+-|-+||.+... .+. .+..-.....++.|.|.- .|
T Consensus 131 ~HDiEt~qsi~V~~~~~~~~~VY~m~~~-P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 131 KHDIETKQSIYVANENNNRGDVYHMDQH-PTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPAL 209 (609)
T ss_pred eeecccceeeeeecccCcccceeecccC-CCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCcee
Confidence 99999999999998432 245666655 446788888999999999998654 221 122233456778899965 46
Q ss_pred EEEEe-CCcEEEEeCC--CcEEEEeecCCCCCC-CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 335 FLTFR-NRTVAVWNFR--GELVTSFEDHLLWHP-DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 335 laS~s-D~TIklWd~~--G~ll~tl~gH~~~~~-~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
|++.+ -+-+-|||.+ ...+....+...... +..-.++-|+|+|..+++--. -.-=-++|+.+.+|
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR-----------~~~P~~~D~~S~R~ 278 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR-----------GKCPLYFDFISQRC 278 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc-----------cCCCEEeeeecccc
Confidence 67777 8889999985 222222211111100 111157899999998887543 12234788887777
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..--..|+. -+-||+. .+-+++|--|.. ++|||.|=-|++|.+
T Consensus 279 ~V~k~D~N~--------------~GY~N~~-----------------T~KS~~F~~D~~-v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 279 FVLKSDHNP--------------NGYCNIK-----------------TIKSMTFIDDYT-VATGSDHWGIHIWKL 321 (609)
T ss_pred eeEeccCCC--------------Ccceeee-----------------eeeeeeeeccee-eeccCcccceEEEec
Confidence 544445541 1335444 566788877765 999999999999974
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=124.12 Aligned_cols=201 Identities=11% Similarity=0.125 Sum_probs=151.4
Q ss_pred eEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
..++-++.||.+-+-+ ++|+.-.++. ...|.+-.++|+|.-|.+++ .|+.||+|+- +|-+.-++....-.+++|
T Consensus 76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G--EDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAG--EDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeec--CCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 4566777898887776 5666555554 45788999998776666644 4589999994 787766776655788999
Q ss_pred EEEecCCCEEEEEeCC-CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCC
Q 011452 284 DFIEQFNEKLLVKQEN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLL 361 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D-~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~ 361 (485)
+|- |+.+.++-++.+ -.||=.... .+.+ ..+.|.+-|-++.|+|.+.+++|++ |-..||||..|..+.+-..|..
T Consensus 152 ~W~-p~S~~vl~c~g~h~~IKpL~~n-~k~i-~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey 228 (737)
T KOG1524|consen 152 RWA-PNSNSIVFCQGGHISIKPLAAN-SKII-RWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEY 228 (737)
T ss_pred EEC-CCCCceEEecCCeEEEeecccc-ccee-EEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhcc
Confidence 996 555666665433 334433322 2333 3468999999999999999999999 9999999999999998888887
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
. +.+|+|.|| +..+-+|. +|.|+ ..-.
T Consensus 229 ~-----ITSva~npd-~~~~v~S~------------nt~R~------------~~p~----------------------- 255 (737)
T KOG1524|consen 229 A-----ITSVAFNPE-KDYLLWSY------------NTARF------------SSPR----------------------- 255 (737)
T ss_pred c-----eeeeeeccc-cceeeeee------------eeeee------------cCCC-----------------------
Confidence 7 999999999 66666665 67763 1111
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
. +.|..|+|||||..++.|...|.|
T Consensus 256 ---~-----------GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 256 ---V-----------GSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ---c-----------cceEEEEEcCCCceeeccccCceE
Confidence 0 389999999999999999988876
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.4e-11 Score=120.91 Aligned_cols=182 Identities=13% Similarity=0.174 Sum_probs=134.9
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEe--cccCC-C
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTEV--SRTEF-M 321 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~-~~~~lls~s~D~tIkIWDv~tg~~~~~--l~gh~-~ 321 (485)
.+|++-|. ++|||+|..||+.|..|+++..++..|.|+.- .+.-+++++.||+||+||+++...... ..+|. .
T Consensus 42 ~vav~lSn---gsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~ 118 (376)
T KOG1188|consen 42 AVAVSLSN---GSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGT 118 (376)
T ss_pred eEEEEecC---CeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCC
Confidence 34455444 69999999999999999999999999999854 345677789999999999998654333 34444 2
Q ss_pred ceEEEEEcCCCcEEEEEe-----CCcEEEEeCC--CcEEEE-eecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCC
Q 011452 322 TPSAFIFLYENQLFLTFR-----NRTVAVWNFR--GELVTS-FEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPL 392 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-----D~TIklWd~~--G~ll~t-l~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~ 392 (485)
.-.+++..-.+++++.+. |-.|-+||++ -+++.. .+.|.+- |..|.|.| |-.+|+|||-
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD-----VT~lrFHP~~pnlLlSGSv------- 186 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD-----VTQLRFHPSDPNLLLSGSV------- 186 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc-----ceeEEecCCCCCeEEeecc-------
Confidence 344455555778888774 6689999996 444554 4567655 99999999 5689999987
Q ss_pred CcCCCCeEEEEeCCCCe----EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 393 AEGNAGSINISNILTGK----CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
||-|+|+|+.--. ++.+|. |. ..|..+.|..++
T Consensus 187 ----DGLvnlfD~~~d~EeDaL~~viN-~~--------------------------------------sSI~~igw~~~~ 223 (376)
T KOG1188|consen 187 ----DGLVNLFDTKKDNEEDALLHVIN-HG--------------------------------------SSIHLIGWLSKK 223 (376)
T ss_pred ----cceEEeeecCCCcchhhHHHhhc-cc--------------------------------------ceeeeeeeecCC
Confidence 8999999986321 111111 11 168889999888
Q ss_pred -CEEEEecCCCcEEEccC
Q 011452 469 -NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 469 -~~LaSgs~DgtVklWd~ 485 (485)
+.|.+-+.+++..+|++
T Consensus 224 ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYEL 241 (376)
T ss_pred cceEEEEEccCceeEEEc
Confidence 56999999999999973
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.1e-11 Score=132.73 Aligned_cols=191 Identities=11% Similarity=0.079 Sum_probs=144.7
Q ss_pred cEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEE--ecCCCEEEEEeCCCcEEEEECCC
Q 011452 235 NVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFI--EQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 235 ~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~--~~~~~~lls~s~D~tIkIWDv~t 309 (485)
+|..-.+. .+..++...+ ++.+-|||...+.++....+- .+.. ..... .+..=++++++-=+.|-+|+..-
T Consensus 89 wi~g~~l~~e~k~i~l~~~---~ns~~i~d~~~~~~~~~i~~~-er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTS---RNSLLIRDSKNSSVLSKIQSD-ERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred cccccchhhhcceEEEEEc---CceEEEEecccCceehhcCCC-ceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 44444444 3445555433 368888888877777655421 1111 11111 12223556677888999999873
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
-+.-..+.||.+.+.++.+|-||.+++|.| |++|++|+++ ++.+. +.=||... |+.+.|.|+ +|+|++.
T Consensus 165 dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR-----vw~~~~~~n--~i~t~ge- 236 (967)
T KOG0974|consen 165 DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR-----VWACCFLPN--RIITVGE- 236 (967)
T ss_pred cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce-----eEEEEeccc--eeEEecc-
Confidence 232224789999999999999999999999 9999999996 77555 77789877 999999999 9999986
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
|.|.++|+.. |+.+.++.+|.. ..|+.++.++
T Consensus 237 ----------dctcrvW~~~-~~~l~~y~~h~g-------------------------------------~~iw~~~~~~ 268 (967)
T KOG0974|consen 237 ----------DCTCRVWGVN-GTQLEVYDEHSG-------------------------------------KGIWKIAVPI 268 (967)
T ss_pred ----------ceEEEEEecc-cceehhhhhhhh-------------------------------------cceeEEEEcC
Confidence 7999999864 888899999974 3899999999
Q ss_pred CCCEEEEecCCCcEEEccC
Q 011452 467 DRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklWd~ 485 (485)
+-.+++||+.|+++|+|+.
T Consensus 269 ~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 269 GVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred CceEEEeeccCcchhhhhh
Confidence 9999999999999999983
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.29 E-value=5e-08 Score=100.53 Aligned_cols=242 Identities=16% Similarity=0.251 Sum_probs=155.8
Q ss_pred ccCceEEEEeCCCCeEEEEeeC----CCcEEEeecCC--CeE--EEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQ----DSIYKVFDLKN--YTM--LYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~----D~tiKlWdl~~--g~~--l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
...|.+++++ |++++|-.... ++.|-.|++.. |++ +.+.. +..-..|+++|++..|..+.- .+++|-+
T Consensus 36 ~~~Ps~l~~~-~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany-~~g~v~v 113 (345)
T PF10282_consen 36 GENPSWLAVS-PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY-GGGSVSV 113 (345)
T ss_dssp SSSECCEEE--TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET-TTTEEEE
T ss_pred CCCCceEEEE-eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc-cCCeEEE
Confidence 3456789998 68887766654 57898888765 554 33333 456678999985555544432 2479999
Q ss_pred EecCC-CeEEEE---eec----------CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe--eEE--e-cccCCC
Q 011452 262 LSIED-GTVLKS---FNH----------LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFE--LTE--V-SRTEFM 321 (485)
Q Consensus 262 Wdi~t-G~~L~t---l~~----------~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~--~~~--~-l~gh~~ 321 (485)
+++.. |++... +.+ -..+.-.|.|. |++..+++.. ....|.++++.... +.. . -.....
T Consensus 114 ~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~-pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~ 192 (345)
T PF10282_consen 114 FPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS-PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGS 192 (345)
T ss_dssp EEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE--TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTS
T ss_pred EEccCCcccceeeeecccCCCCCcccccccccceeEEEC-CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCC
Confidence 99976 665543 211 12334578886 7888888874 45589999998654 322 1 123455
Q ss_pred ceEEEEEcCCCcEEEEEe--CCcEEEEeCC---CcE--EEEeecCC-CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 322 TPSAFIFLYENQLFLTFR--NRTVAVWNFR---GEL--VTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s--D~TIklWd~~---G~l--l~tl~gH~-~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
.++-++|+|||+++-... +++|.++++. |++ +++..-.. .+........|++||||++|..+...
T Consensus 193 GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------- 265 (345)
T PF10282_consen 193 GPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------- 265 (345)
T ss_dssp SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT-------
T ss_pred CCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc-------
Confidence 799999999999876555 9999999984 432 33332110 11111126789999999999887762
Q ss_pred cCCCCeEEEEeC--CCCeE--EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC
Q 011452 394 EGNAGSINISNI--LTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN 469 (485)
Q Consensus 394 ~~~DgtIklWdl--~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~ 469 (485)
.++|-++++ .+|+. +..+...- ..-+.++|+|||+
T Consensus 266 ---~~sI~vf~~d~~~g~l~~~~~~~~~G--------------------------------------~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 266 ---SNSISVFDLDPATGTLTLVQTVPTGG--------------------------------------KFPRHFAFSPDGR 304 (345)
T ss_dssp ---TTEEEEEEECTTTTTEEEEEEEEESS--------------------------------------SSEEEEEE-TTSS
T ss_pred ---CCEEEEEEEecCCCceEEEEEEeCCC--------------------------------------CCccEEEEeCCCC
Confidence 689999998 34543 22221110 1467899999999
Q ss_pred EEEEec-CCCcEEEcc
Q 011452 470 EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 470 ~LaSgs-~DgtVklWd 484 (485)
+|+.++ .+++|.+++
T Consensus 305 ~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFD 320 (345)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EEEEEecCCCeEEEEE
Confidence 999887 567888875
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.2e-10 Score=126.40 Aligned_cols=242 Identities=13% Similarity=0.071 Sum_probs=153.6
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeeccc-------CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRET-------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS 163 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t-------G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s 163 (485)
|++.|..++.+ +.+++++|.|||||+||... -+..+|... -...+..|.+-++|+++|.++.|
T Consensus 1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~-~~sr~~~vt~~~~~~~~Av~t~D------ 1119 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSP-EGSRVEKVTMCGNGDQFAVSTKD------ 1119 (1431)
T ss_pred ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEec-cCCceEEEEeccCCCeEEEEcCC------
Confidence 77888999988 58999999999999999652 223444443 45579999999999999987543
Q ss_pred ccceeEEEEeEecc--CCc-Ccccce-eee-ccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEc----C
Q 011452 164 SLRCRSTRIEYIRR--GKP-DAGFAL-FES-ESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS----D 233 (485)
Q Consensus 164 tL~~~t~~lw~i~~--G~~-~~~~~l-f~~-~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~----~ 233 (485)
+.+.+-.|.. ++. ...+.. -.. ..-..+.--+|....+. .|+++-.-+-|-.||+..-.-+.+++ .
T Consensus 1120 ----G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1120 ----GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred ----CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 3666655532 111 000000 000 00011111244333444 78899888999999987655444443 4
Q ss_pred CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec-CCcceeEEEE--EecCCCEEEEE-e-CCCcEEEEEC
Q 011452 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNKKVDF--IEQFNEKLLVK-Q-ENENLQILDV 307 (485)
Q Consensus 234 ~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-~~~~~~~V~f--~~~~~~~lls~-s-~D~tIkIWDv 307 (485)
..|.+++++| +.+++++.+ . +.+-+||+.=+.++.+..+ +...+..|.. ..+.+...+++ + ..+-|-+|++
T Consensus 1196 G~vTSi~idp~~~WlviGts-~--G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTS-R--GQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred cceeEEEecCCceEEEEecC-C--ceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 5799999999 555555433 3 7899999988877776652 2233444443 33434566665 4 7899999999
Q ss_pred CCCeeEEecccCCC-------------------ceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 308 RNFELTEVSRTEFM-------------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 308 ~tg~~~~~l~gh~~-------------------~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
.+|.+..++..-.. ......+..-+..+++|+ |..|+.||..
T Consensus 1273 ~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1273 ETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred ccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence 99998888743311 111122223344566666 9999999985
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.1e-09 Score=108.76 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=154.1
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cC--CcEEEEEEcCCceEEEEEcCC---CCeeEEEEecCCCeE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SD--KNVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTV 269 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~--~~V~~VafSpg~~ll~sss~~---~D~tIklWdi~tG~~ 269 (485)
.|+|. .|.--.+ .+.|.=+|+++.+..++..+- .+ -.+.+.-|--+-..++.+... .-+.|-|||=...++
T Consensus 10 svs~N-QD~ScFa-va~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~~ 87 (346)
T KOG2111|consen 10 SVSFN-QDHSCFA-VATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKERC 87 (346)
T ss_pred EEEEc-cCCceEE-EEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCcE
Confidence 58886 4554444 456777999998875543222 11 122222222222223321110 115788999888888
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEecccCCC--ceEEEEEcCCCcEEEEEe--CCcEE
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFELTEVSRTEFM--TPSAFIFLYENQLFLTFR--NRTVA 344 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~--~v~avaFspdg~llaS~s--D~TIk 344 (485)
+.+|.- ...|.+|.+. .++|++- -.+.|.+|... +-+.++.+..-.+ ..-++.=.-+..+||-=+ -|.|+
T Consensus 88 i~el~f-~~~I~~V~l~---r~riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 88 IIELSF-NSEIKAVKLR---RDRIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEe-ccceeeEEEc---CCeEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEE
Confidence 888873 3678888875 3455554 67899999987 4455555433221 122222233444454334 78999
Q ss_pred EEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCCCeEEEEecCCCCC
Q 011452 345 VWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 345 lWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~TGk~l~tl~gH~~~ 420 (485)
|=|+. -+. -.....|... |..|+++-+|.+|||+|. .|| |||||..+|+.++.++--.+
T Consensus 163 i~dL~~~~~~~p~~I~AH~s~-----Iacv~Ln~~Gt~vATaSt-----------kGTLIRIFdt~~g~~l~E~RRG~d- 225 (346)
T KOG2111|consen 163 IVDLASTKPNAPSIINAHDSD-----IACVALNLQGTLVATAST-----------KGTLIRIFDTEDGTLLQELRRGVD- 225 (346)
T ss_pred EEEhhhcCcCCceEEEcccCc-----eeEEEEcCCccEEEEecc-----------CcEEEEEEEcCCCcEeeeeecCCc-
Confidence 99985 333 2678899877 999999999999999997 576 89999999999999976442
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+ ..|++++||||+++||.+|..||||+..
T Consensus 226 ---------------------~--------------A~iy~iaFSp~~s~LavsSdKgTlHiF~ 254 (346)
T KOG2111|consen 226 ---------------------R--------------ADIYCIAFSPNSSWLAVSSDKGTLHIFS 254 (346)
T ss_pred ---------------------h--------------heEEEEEeCCCccEEEEEcCCCeEEEEE
Confidence 1 2899999999999999999999999975
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.1e-10 Score=124.17 Aligned_cols=124 Identities=11% Similarity=0.184 Sum_probs=94.4
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--------------eeEEec--cc------------CCCceEEEEEcC
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNF--------------ELTEVS--RT------------EFMTPSAFIFLY 330 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--------------~~~~~l--~g------------h~~~v~avaFsp 330 (485)
.+..+.|.+-++.+++++-.++.+-++|...- ....++ .. -...|+.++|||
T Consensus 221 svT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~ 300 (636)
T KOG2394|consen 221 SVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP 300 (636)
T ss_pred ceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC
Confidence 45577777767778888889999999875321 111111 11 134789999999
Q ss_pred CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 331 ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 331 dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
||+.||+-| |+.+||.|+. -+|+-.+.--- +....|+|||||+||++|++ |.-|-||.+..+
T Consensus 301 DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPDGKyIvtGGE-----------DDLVtVwSf~er 364 (636)
T KOG2394|consen 301 DGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPDGKYIVTGGE-----------DDLVTVWSFEER 364 (636)
T ss_pred CCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCCccEEEecCC-----------cceEEEEEeccc
Confidence 999999999 9999999997 55555443221 22678999999999999987 689999999999
Q ss_pred eEEEEecCCC
Q 011452 409 KCLAKIRASN 418 (485)
Q Consensus 409 k~l~tl~gH~ 418 (485)
+.++-=+||.
T Consensus 365 RVVARGqGHk 374 (636)
T KOG2394|consen 365 RVVARGQGHK 374 (636)
T ss_pred eEEEeccccc
Confidence 9999888886
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.7e-10 Score=112.45 Aligned_cols=196 Identities=15% Similarity=0.186 Sum_probs=137.6
Q ss_pred cEEEEEEcCCc-----eEEEEEcCCCCeeEEEEecC--CCeEE--EEee-----cCCcceeEEEEEecCCCEEEEEeCCC
Q 011452 235 NVQEIKISPGI-----MLLIFTKASGHVPLKILSIE--DGTVL--KSFN-----HLLHRNKKVDFIEQFNEKLLVKQENE 300 (485)
Q Consensus 235 ~V~~VafSpg~-----~ll~sss~~~D~tIklWdi~--tG~~L--~tl~-----~~~~~~~~V~f~~~~~~~lls~s~D~ 300 (485)
++..+-|.|+. .||++++ ..+|||.+. .++.. ..|+ .+-....+.+|.+.+...+.++|-|-
T Consensus 98 P~tK~~wiPd~~g~~pdlLATs~----D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 98 PVTKLMWIPDSKGVYPDLLATSS----DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CccceEecCCccccCcchhhccc----CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 55566666644 2343322 267777765 22221 1111 23345567778777788888899999
Q ss_pred cEEEEECCCCee---EEecccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEE-EeecCCCCCCCCCeeEEEE
Q 011452 301 NLQILDVRNFEL---TEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVT-SFEDHLLWHPDCNTNNIYI 373 (485)
Q Consensus 301 tIkIWDv~tg~~---~~~l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~-tl~gH~~~~~~~~v~svaf 373 (485)
|.-|||+++|.. ...|-.|...|..++|+-++ +.|||.+ ||.||+.|++ -+--+ .+|+-...++ ..-+++
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p---LlRLsw 250 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP---LLRLSW 250 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc---ceeecc
Confidence 999999999733 55577899999999999865 5788889 9999999996 33222 2333321111 344666
Q ss_pred CC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccc
Q 011452 374 TS-DQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRST 451 (485)
Q Consensus 374 Sp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (485)
++ |-.++|+-.++ ...|-|-|+.- +..++.|++|+.
T Consensus 251 nkqDpnymATf~~d----------S~~V~iLDiR~P~tpva~L~~H~a-------------------------------- 288 (364)
T KOG0290|consen 251 NKQDPNYMATFAMD----------SNKVVILDIRVPCTPVARLRNHQA-------------------------------- 288 (364)
T ss_pred CcCCchHHhhhhcC----------CceEEEEEecCCCcceehhhcCcc--------------------------------
Confidence 55 45677777662 46788999864 667899999983
Q ss_pred hhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 452 VAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 452 ~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.|.+++|.|.. +.|.|++.|..+-+||+
T Consensus 289 ------~VNgIaWaPhS~~hictaGDD~qaliWDl 317 (364)
T KOG0290|consen 289 ------SVNGIAWAPHSSSHICTAGDDCQALIWDL 317 (364)
T ss_pred ------cccceEecCCCCceeeecCCcceEEEEec
Confidence 89999999976 56999999999999995
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-09 Score=115.15 Aligned_cols=271 Identities=15% Similarity=0.162 Sum_probs=185.7
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC--ceEEEEeCCCCeEEEEee
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW--PGFVEFDDVNGKVLTYSA 212 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~--~~~V~Fs~pnG~~Las~s 212 (485)
+..+-..|-.+|||++|..++.|. -.|+++|+..=-+ -|+- ++.. +.+.-.+ .|=.-++.--
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSL-----KFER-hlDae~V~feiLs-DD~SK~v~L~ 113 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSL-----KFER-HLDAEVVDFEILS-DDYSKSVFLQ 113 (703)
T ss_pred CccccceeEecCCCcEEEEecccC---------CceEEEEccccee-----eeee-cccccceeEEEec-cchhhheEee
Confidence 556788999999999998877765 4778888632221 1332 2211 1122223 1222233334
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 213 QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~-~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
.|++|-+=. +.|. -|++. ...-.+++.+ |.--|+..+++ ..|.-.+++.|.-|..|....+.++.|..+ +-.
T Consensus 114 ~DR~IefHa-k~G~-hy~~RIP~~GRDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in-~~h 187 (703)
T KOG2321|consen 114 NDRTIEFHA-KYGR-HYRTRIPKFGRDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSIN-EEH 187 (703)
T ss_pred cCceeeehh-hcCe-eeeeecCcCCccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeec-Ccc
Confidence 577774433 1222 12221 1234567777 64444444444 368889999999999999777888888876 456
Q ss_pred CEEEEEeCCCcEEEEECCCCeeEEecc------cCC-----CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee
Q 011452 291 EKLLVKQENENLQILDVRNFELTEVSR------TEF-----MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 357 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~~~~l~------gh~-----~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~ 357 (485)
+.|++|.+|+.|..||.++.....++. .|. ..|+++.|+.||=.++.|. +|.|-|+|++ -+.+ -..
T Consensus 188 gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-~~k 266 (703)
T KOG2321|consen 188 GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-LVK 266 (703)
T ss_pred ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-eec
Confidence 777778899999999999876655542 222 3499999999999999998 9999999997 4433 235
Q ss_pred cCCCCCCCCCeeEEEECCC--CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 358 DHLLWHPDCNTNNIYITSD--QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpD--G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
+|... -.+..+.|-+. +..|+|.. ...+||||-.||+..+.+..-.
T Consensus 267 dh~~e---~pi~~l~~~~~~~q~~v~S~D------------k~~~kiWd~~~Gk~~asiEpt~----------------- 314 (703)
T KOG2321|consen 267 DHGYE---LPIKKLDWQDTDQQNKVVSMD------------KRILKIWDECTGKPMASIEPTS----------------- 314 (703)
T ss_pred ccCCc---cceeeecccccCCCceEEecc------------hHHhhhcccccCCceeeccccC-----------------
Confidence 56543 22778888665 77888864 3789999999999998887643
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.|..++|=|++-++.+|.++..++-
T Consensus 315 ----------------------~lND~C~~p~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 315 ----------------------DLNDFCFVPGSGMFFTANESSKMHT 339 (703)
T ss_pred ----------------------CcCceeeecCCceEEEecCCCccee
Confidence 5667889999999999998887654
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.5e-10 Score=119.72 Aligned_cols=205 Identities=11% Similarity=0.143 Sum_probs=147.3
Q ss_pred CCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-EEEEeecCCcce
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLHRN 280 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~-~L~tl~~~~~~~ 280 (485)
||-+.++|++..||-+|+||..++++...+. |...+ ++-++--.|.+.-+. +++...- .
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~----------p~~~~------s~t~~~~~w~L~~~~s~~k~~~~--~-- 61 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFA----------PIASL------SGTCTYTKWGLSADYSPMKWLSL--E-- 61 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeec----------cchhc------cCcceeEEEEEEeccchHHHHhH--H--
Confidence 4668899999999999999998887655542 21111 111344444422111 1111110 0
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
+...- ..+-..++-|-..|.|.++++..|+....+. .|...|+++-...+-..|=|++ |..|-.|++. +..+..+
T Consensus 62 ~~~~~-s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 62 KAKKA-SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred HHhhc-cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeee
Confidence 00000 1111222335588999999999999988775 6999999999899999999999 9999999996 8889888
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
.+...- +.+++++|||+.|+++| ++|++||++|+|.+.+|.||..
T Consensus 141 ~~~~~~-----~~sl~is~D~~~l~~as-------------~~ik~~~~~~kevv~~ftgh~s----------------- 185 (541)
T KOG4547|consen 141 KEQKPL-----VSSLCISPDGKILLTAS-------------RQIKVLDIETKEVVITFTGHGS----------------- 185 (541)
T ss_pred ccCCCc-----cceEEEcCCCCEEEecc-------------ceEEEEEccCceEEEEecCCCc-----------------
Confidence 877655 89999999999999997 6899999999999999999973
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCC-----CCEEE-EecCCCcEEEc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDED-----RNEIY-TGNRHGLVHVW 483 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-----g~~La-Sgs~DgtVklW 483 (485)
.|++++|-.+ |..+. ++..+.-+-+|
T Consensus 186 ---------------------~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w 217 (541)
T KOG4547|consen 186 ---------------------PVRTLSFTTLIDGIIGKYVLSSAAAERGITVW 217 (541)
T ss_pred ---------------------ceEEEEEEEeccccccceeeeccccccceeEE
Confidence 8999999888 65544 44444445555
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.8e-09 Score=111.60 Aligned_cols=310 Identities=17% Similarity=0.265 Sum_probs=209.7
Q ss_pred EEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCc----ccceeEEEEeE
Q 011452 101 IVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS----SLRCRSTRIEY 174 (485)
Q Consensus 101 i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~s----tL~~~t~~lw~ 174 (485)
|.+| |.+|++--.-| |.||--+.-.+++ ..+|. .|.-+.|||+-++|+|=|. .... --.++.+.|||
T Consensus 216 v~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~--RF~Hp-~Vq~idfSP~EkYLVT~s~---~p~~~~~~d~e~~~l~IWD 288 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQG-IALWGGESFDRIQ--RFYHP-GVQFIDFSPNEKYLVTYSP---EPIIVEEDDNEGQQLIIWD 288 (698)
T ss_pred EEecCCceEEEEEeccc-eeeecCccHHHHH--hccCC-CceeeecCCccceEEEecC---CccccCcccCCCceEEEEE
Confidence 5566 88888876555 6799744333443 23465 4899999999999998553 1100 11347899999
Q ss_pred eccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--EEEcCCcEEEEEEcCCceEEEE-E
Q 011452 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIF-T 251 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l--~tl~~~~V~~VafSpg~~ll~s-s 251 (485)
|++|.+..+++.+......|| .+.+| .|+|++|--.. .+|-|++...-.++ .++.-..|....|||...++++ .
T Consensus 289 I~tG~lkrsF~~~~~~~~~WP-~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwt 365 (698)
T KOG2314|consen 289 IATGLLKRSFPVIKSPYLKWP-IFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWT 365 (698)
T ss_pred ccccchhcceeccCCCccccc-eEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEc
Confidence 999999888888877677777 56787 68999997665 57889886553322 3444568999999996666555 3
Q ss_pred cCCCC--eeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEeC----C------CcEEEEECCCCee-EEec
Q 011452 252 KASGH--VPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQE----N------ENLQILDVRNFEL-TEVS 316 (485)
Q Consensus 252 s~~~D--~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s~----D------~tIkIWDv~tg~~-~~~l 316 (485)
....+ -++-|-.+.+++.|++-+- .+|. .+.|- -.|++|.+.-+ - -++.|.-++.... +...
T Consensus 366 pe~~~~parvtL~evPs~~~iRt~nl--fnVsDckLhWQ-k~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 366 PETNNIPARVTLMEVPSKREIRTKNL--FNVSDCKLHWQ-KSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred ccccCCcceEEEEecCccceeeeccc--eeeeccEEEec-cCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee
Confidence 33333 3567889999999998874 3454 44442 34667766421 1 2455665554332 2222
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeCC-----CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-----GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~s----D~TIklWd~~-----G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.-...|-+|+|-|.|..|+.-+ -.||..+.++ -+++..|+.-. .|.|.|||.|++++-+..
T Consensus 443 -elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~-------~N~vfwsPkG~fvvva~l-- 512 (698)
T KOG2314|consen 443 -ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKF-------ANTVFWSPKGRFVVVAAL-- 512 (698)
T ss_pred -ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccc-------cceEEEcCCCcEEEEEEe--
Confidence 2345788999999999998765 3589999874 23677787633 579999999999999886
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED 467 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD 467 (485)
.|.-|.+...|..-..|.. .+|.. |. .-+-+.++|.
T Consensus 513 ------~s~~g~l~F~D~~~a~~k~--~~~~e----------------------h~--------------~at~veWDPt 548 (698)
T KOG2314|consen 513 ------VSRRGDLEFYDTDYADLKD--TASPE----------------------HF--------------AATEVEWDPT 548 (698)
T ss_pred ------cccccceEEEecchhhhhh--ccCcc----------------------cc--------------ccccceECCC
Confidence 4566889999875333322 22221 10 3345889999
Q ss_pred CCEEEEecCC
Q 011452 468 RNEIYTGNRH 477 (485)
Q Consensus 468 g~~LaSgs~D 477 (485)
|++++|+|.-
T Consensus 549 GRYvvT~ss~ 558 (698)
T KOG2314|consen 549 GRYVVTSSSS 558 (698)
T ss_pred CCEEEEeeeh
Confidence 9999999853
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.3e-09 Score=107.28 Aligned_cols=175 Identities=10% Similarity=0.179 Sum_probs=132.1
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
-+.+-|||=..+.++.++. ...|.+|.++++...++- .+.|+||... +-+.+..+..-..+..-.+..+-.+.
T Consensus 74 pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl-----~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k 148 (346)
T KOG2111|consen 74 PNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVL-----ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNK 148 (346)
T ss_pred CceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEe-----cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCc
Confidence 3678899966677888887 568999999998776654 2699999987 55666766543223222333222234
Q ss_pred EEEEE-e-CCCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCC-CcEEEEeecCCCCCC
Q 011452 292 KLLVK-Q-ENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFR-GELVTSFEDHLLWHP 364 (485)
Q Consensus 292 ~lls~-s-~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~-G~ll~tl~gH~~~~~ 364 (485)
.+|+- | .=|.|||-|+..-+. ..+...|...|.+++.+-+|.++||+| .| -|||||.+ |++++.|.--...
T Consensus 149 ~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~-- 226 (346)
T KOG2111|consen 149 SLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR-- 226 (346)
T ss_pred eEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--
Confidence 44442 4 559999999987665 366779999999999999999999999 77 58999996 9999988632221
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
..+..|+||||.++||.+|+ .|||.|+.+..
T Consensus 227 -A~iy~iaFSp~~s~LavsSd-----------KgTlHiF~l~~ 257 (346)
T KOG2111|consen 227 -ADIYCIAFSPNSSWLAVSSD-----------KGTLHIFSLRD 257 (346)
T ss_pred -heEEEEEeCCCccEEEEEcC-----------CCeEEEEEeec
Confidence 22899999999999999986 69999998763
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-10 Score=122.29 Aligned_cols=233 Identities=17% Similarity=0.148 Sum_probs=151.0
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVL 208 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~L 208 (485)
.|.| |.+-|+++.||.||..|||+| || ..+-|||.-.-|+ ..+..++|..-+.+|.|=| .+..++
T Consensus 45 eL~G-H~GCVN~LeWn~dG~lL~SGS----DD------~r~ivWd~~~~Kl---lhsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 45 ELTG-HTGCVNCLEWNADGELLASGS----DD------TRLIVWDPFEYKL---LHSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhcc-ccceecceeecCCCCEEeecC----Cc------ceEEeecchhcce---eeeeecccccceeEEeeeccCCCeEE
Confidence 4666 999999999999999999955 77 7888999876666 2244556777788899953 256889
Q ss_pred EEeeCCCcEEEeecCCCe---E----E-----EEEcCCcEEEEEEcCCc--eEEEEEcCCCCeeEEEEecCC-------C
Q 011452 209 TYSAQDSIYKVFDLKNYT---M----L-----YSISDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIED-------G 267 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~---~----l-----~tl~~~~V~~VafSpg~--~ll~sss~~~D~tIklWdi~t-------G 267 (485)
+||+.|+.|||+|+..-+ + . +.-|...|.-||-.|++ ...+ + +.|+||+-.|+.. +
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfws-a--sEDGtirQyDiREph~c~p~~ 187 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWS-A--SEDGTIRQYDIREPHVCNPDE 187 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEE-e--cCCcceeeecccCCccCCccc
Confidence 999999999999997421 1 1 11234578889988866 3333 2 4569999999864 2
Q ss_pred eEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecccCCCce----EEEE-EcCCCcEEEEE
Q 011452 268 TVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTP----SAFI-FLYENQLFLTF 338 (485)
Q Consensus 268 ~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v----~ava-Fspdg~llaS~ 338 (485)
.+...+ ...+-..++++.+|..+.+|++|+.|--.||+|.+.-. ....-..|...+ .+|. |+|++-
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----- 262 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----- 262 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc-----
Confidence 222222 12122345788888888999999999999999965221 111111122111 1332 555542
Q ss_pred eCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 339 RNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 339 sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
-+.+|.+..-. . | ..-+.|+|+| .+|+|.+. .-|.|+|+..++-..
T Consensus 263 -------kn~~gn~~~~~---~-----~-~t~vtfnpNGtElLvs~~g------------EhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 263 -------KNSQGNLDRYI---T-----C-CTYVTFNPNGTELLVSWGG------------EHVYLFDVNEDKSPT 309 (758)
T ss_pred -------cCcccccccce---e-----e-eEEEEECCCCcEEEEeeCC------------eEEEEEeecCCCCce
Confidence 11122221111 1 1 4568999998 56777764 579999998777543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.9e-09 Score=110.58 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=124.8
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE---cCCcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCC-Ce--
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKNVQEIKISP--GIMLLIFTKASGHVPLKILSIED-GT-- 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl---~~~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~t-G~-- 268 (485)
.|++. +.=--+|.+..|-+||++|-+. ++.-.| .+.+|.++||-| +..+++++. .-|-||.... +.
T Consensus 103 ~~aWh-qH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr----~gIciW~~s~tln~~ 176 (445)
T KOG2139|consen 103 GVAWH-QHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----AGICIWSDSRTLNAN 176 (445)
T ss_pred eEeec-hhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec----ceeEEEEcCcccccc
Confidence 56775 4444467788999999999544 654444 467999999998 666777655 3689997532 11
Q ss_pred ---------EEEEee--cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEE
Q 011452 269 ---------VLKSFN--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFL 336 (485)
Q Consensus 269 ---------~L~tl~--~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~lla 336 (485)
++..|+ || ..|.++++. +|+..|++++ .|..|.|||+.+|.++-...---+.++-+.|||||..|.
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn-~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lf 254 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWN-EDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLF 254 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEc-CCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEE
Confidence 112222 33 346688886 6788888887 889999999999988766544455778899999999999
Q ss_pred EEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 337 TFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 337 S~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.++ |++.+||+.+ -...+=..+. +.|...++||+|.+|.-.+.
T Consensus 255 aAt~davfrlw~e~q~wt~erw~lgs------grvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 255 AATCDAVFRLWQENQSWTKERWILGS------GRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred EecccceeeeehhcccceecceeccC------CceeeeeecCCCCEEEEEEc
Confidence 999 9999999763 2222211121 12889999999998877664
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.3e-09 Score=111.18 Aligned_cols=249 Identities=13% Similarity=0.173 Sum_probs=162.1
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCe----EEEEE--c------------CCcEEEEEEcCCc---eEEEEEc
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSI--S------------DKNVQEIKISPGI---MLLIFTK 252 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~----~l~tl--~------------~~~V~~VafSpg~---~ll~sss 252 (485)
+..|+|+ ..|.+||+|..+|-|-++.-. .++ ...++ | ...|..|.+.+++ ..+.+
T Consensus 28 is~vef~-~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls-- 104 (433)
T KOG1354|consen 28 ISAVEFD-HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS-- 104 (433)
T ss_pred eeeEEee-cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe--
Confidence 4579998 699999999999999888643 221 11222 1 1368889998522 22222
Q ss_pred CCCCeeEEEEecCCCeEE-----------------------------------EEe-ecCCcceeEEEEEecCCCEEEEE
Q 011452 253 ASGHVPLKILSIEDGTVL-----------------------------------KSF-NHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L-----------------------------------~tl-~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
..|+|||+|-+.....- +.+ +.|.-++.++.+. .|.+.++ +
T Consensus 105 -tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N-sD~Et~l-S 181 (433)
T KOG1354|consen 105 -TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN-SDKETFL-S 181 (433)
T ss_pred -cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec-CccceEe-e
Confidence 35699999987542211 122 2577788899986 3455555 4
Q ss_pred eCCCcEEEEECCC-Cee--EEecccCCC-----ceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-Cc-EE---EEeecCCC
Q 011452 297 QENENLQILDVRN-FEL--TEVSRTEFM-----TPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GE-LV---TSFEDHLL 361 (485)
Q Consensus 297 s~D~tIkIWDv~t-g~~--~~~l~gh~~-----~v~avaFspd-g~llaS~s-D~TIklWd~~-G~-ll---~tl~gH~~ 361 (485)
.+|=-|.||+++- .++ +--.+.|.+ -|++.-|+|. ..+|+-++ -|+|+|-|++ .. |. ..|+.-..
T Consensus 182 ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped 261 (433)
T KOG1354|consen 182 ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED 261 (433)
T ss_pred ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence 5899999999872 222 222344433 5677779885 45666666 9999999996 22 22 23332222
Q ss_pred CCCC-------CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 362 WHPD-------CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI-LTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 362 ~~~~-------~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
+.+- ..|..|-||++|.||+|-.- -||||||+ ...+.+.+++-|....
T Consensus 262 p~~rsffseiIsSISDvKFs~sGryilsRDy------------ltvk~wD~nme~~pv~t~~vh~~lr------------ 317 (433)
T KOG1354|consen 262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY------------LTVKLWDLNMEAKPVETYPVHEYLR------------ 317 (433)
T ss_pred CcchhhHHHHhhhhhceEEccCCcEEEEecc------------ceeEEEeccccCCcceEEeehHhHH------------
Confidence 1100 23788999999999999653 89999999 7788999999997410
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.-+|..- ...+.-+=..++||-++..+.|||..+.+|+.+
T Consensus 318 ~kLc~lY-----------EnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 318 SKLCSLY-----------ENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred HHHHHHh-----------hccchhheeEEEEcCCcceEecccccceEEEec
Confidence 0011100 001111335689999999999999999999876
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.2e-09 Score=108.09 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=160.1
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEE------c--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe----EE
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI------S--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT----VL 270 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl------~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~----~L 270 (485)
+++++|.-.+.|..+...+.....+.-.+ + ...|-..+-.+| +|+++- +++-+.+|.++.|- .|
T Consensus 67 ~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg-~Litc~---~sG~l~~~~~k~~d~hss~l 142 (412)
T KOG3881|consen 67 GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG-TLITCV---SSGNLQVRHDKSGDLHSSKL 142 (412)
T ss_pred CceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC-EEEEEe---cCCcEEEEeccCCccccccc
Confidence 45667777777777777776655544332 1 245666666554 555442 23789999998443 23
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeeEEeccc---------CCCceEEEEEcCC--CcEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRT---------EFMTPSAFIFLYE--NQLFLT 337 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D--~tIkIWDv~tg~~~~~l~g---------h~~~v~avaFspd--g~llaS 337 (485)
..+.-+ ..+..|.-.+.+...+++|+.. ..++|||+++.+.+-.-.- -.-|+.++.|.|. .+.||+
T Consensus 143 ~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat 221 (412)
T KOG3881|consen 143 IKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFAT 221 (412)
T ss_pred eeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEE
Confidence 333322 2333343333445566668877 8999999998843322110 1237788999999 999999
Q ss_pred Ee-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE-
Q 011452 338 FR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK- 413 (485)
Q Consensus 338 ~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t- 413 (485)
+. -+.+++||.+ .+.+..|.--... +.++...|+|.+|..|.. -+-+..+|+.+|+.+..
T Consensus 222 ~T~~hqvR~YDt~~qRRPV~~fd~~E~~-----is~~~l~p~gn~Iy~gn~-----------~g~l~~FD~r~~kl~g~~ 285 (412)
T KOG3881|consen 222 ITRYHQVRLYDTRHQRRPVAQFDFLENP-----ISSTGLTPSGNFIYTGNT-----------KGQLAKFDLRGGKLLGCG 285 (412)
T ss_pred EecceeEEEecCcccCcceeEeccccCc-----ceeeeecCCCcEEEEecc-----------cchhheecccCceeeccc
Confidence 99 9999999995 5577777654444 899999999999999876 58899999999998766
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+.|-. +.|++|-.+|.++.|||++-|..|||.|.
T Consensus 286 ~kg~t--------------------------------------Gsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 286 LKGIT--------------------------------------GSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred cCCcc--------------------------------------CCcceEEEcCCCceEEeeccceeEEEeec
Confidence 66655 28899999999999999999999999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.6e-09 Score=114.41 Aligned_cols=241 Identities=17% Similarity=0.206 Sum_probs=171.2
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC---CceEEEEEcCCCCeeEEEEe-c
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP---GIMLLIFTKASGHVPLKILS-I 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSp---g~~ll~sss~~~D~tIklWd-i 264 (485)
.+-+..|.|. ..|..|+|+|.|..|-|||+..++....+. ..+|-.-+|=| +..++.+ + .|+.+++=. +
T Consensus 142 ~GcVntV~FN-~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~-s--~dgqvr~s~i~ 217 (559)
T KOG1334|consen 142 KGCVNTVHFN-QRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTS-S--RDGQVRVSEIL 217 (559)
T ss_pred CCccceeeec-ccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceec-c--ccCceeeeeec
Confidence 3445578997 799999999999999999999998777774 34666666665 6666554 3 346777654 3
Q ss_pred CCCeEEE--EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---ccCCC---ceEEEEEcCCCc-EE
Q 011452 265 EDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RTEFM---TPSAFIFLYENQ-LF 335 (485)
Q Consensus 265 ~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~gh~~---~v~avaFspdg~-ll 335 (485)
++|.+.+ .+.-|.+++..++..+.....++++++|+.++=.|++++.....+ ..+.. ..++++..|-+. +|
T Consensus 218 ~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~f 297 (559)
T KOG1334|consen 218 ETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEF 297 (559)
T ss_pred cccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccc
Confidence 4677764 455778889999986655778899999999999999987654433 23443 677888888777 78
Q ss_pred EEEe-CCcEEEEeCC---Cc----EEEEeecCCC-CCCCCCeeEEEEC-CCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 336 LTFR-NRTVAVWNFR---GE----LVTSFEDHLL-WHPDCNTNNIYIT-SDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 336 aS~s-D~TIklWd~~---G~----ll~tl~gH~~-~~~~~~v~svafS-pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+++. |.-++++|.+ .+ .+.+|.-|.+ ......|..++|| ..+.+||||. |--|.|++-
T Consensus 298 aVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn------------De~IYLF~~ 365 (559)
T KOG1334|consen 298 AVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN------------DEDIYLFNK 365 (559)
T ss_pred ccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec------------ccceEEecc
Confidence 8888 9999999963 33 2344443333 2223458999999 5568889887 466888753
Q ss_pred C--CC----------eEEEE-ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEE-EEEcCCCCEE
Q 011452 406 L--TG----------KCLAK-IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITA-LFYDEDRNEI 471 (485)
Q Consensus 406 ~--TG----------k~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s-l~fspDg~~L 471 (485)
. -| +.+.. ++||.+ .. .|-. =+|-|...++
T Consensus 366 ~~~~G~~p~~~s~~~~~~k~vYKGHrN-------------------------~~-----------TVKgVNFfGPrsEyV 409 (559)
T KOG1334|consen 366 SMGDGSEPDPSSPREQYVKRVYKGHRN-------------------------SR-----------TVKGVNFFGPRSEYV 409 (559)
T ss_pred ccccCCCCCCCcchhhccchhhccccc-------------------------cc-----------ccceeeeccCccceE
Confidence 2 13 22333 556653 21 2333 2789999999
Q ss_pred EEecCCCcEEEcc
Q 011452 472 YTGNRHGLVHVWS 484 (485)
Q Consensus 472 aSgs~DgtVklWd 484 (485)
+|||.=|-|-+|+
T Consensus 410 vSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 410 VSGSDCGHIFIWD 422 (559)
T ss_pred EecCccceEEEEe
Confidence 9999999999997
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.2e-09 Score=114.66 Aligned_cols=161 Identities=11% Similarity=0.065 Sum_probs=121.1
Q ss_pred cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCC
Q 011452 232 SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRN 309 (485)
Q Consensus 232 ~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~t 309 (485)
|..-|++++++.+|++|+++|+ |.-+-|||.-.-|++..+. ||+..+++|.|.|-.+..+++ +..|.-|+|+|+..
T Consensus 49 H~GCVN~LeWn~dG~lL~SGSD--D~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~ 126 (758)
T KOG1310|consen 49 HTGCVNCLEWNADGELLASGSD--DTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDS 126 (758)
T ss_pred ccceecceeecCCCCEEeecCC--cceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEeccc
Confidence 4457999999988888887654 5889999999889998885 999999999999776665555 57999999999985
Q ss_pred C----------eeEEecccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC--CcEEEEeecCCC---CCC-CCCeeEE
Q 011452 310 F----------ELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR--GELVTSFEDHLL---WHP-DCNTNNI 371 (485)
Q Consensus 310 g----------~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~--G~ll~tl~gH~~---~~~-~~~v~sv 371 (485)
. +.+....-|+..|..+|--|++ ..|-|++ ||||+-+|++ -.|-.....|.. .++ .-....+
T Consensus 127 ~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 127 SKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 2 2333345699999999999999 8999999 9999999985 233333222211 000 0125678
Q ss_pred EECCC-CCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 372 YITSD-QDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 372 afSpD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.+||. -.+||-|+. |--.+|+|.
T Consensus 207 tisp~rp~~laVGgs-----------dpfarLYD~ 230 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGS-----------DPFARLYDR 230 (758)
T ss_pred eecCCCCceEEecCC-----------Cchhhhhhh
Confidence 89995 467777654 678899984
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-08 Score=104.21 Aligned_cols=248 Identities=16% Similarity=0.112 Sum_probs=164.9
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc----Cc--ccceeeeccccCceEEEEeCCCCeEEE
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP----DA--GFALFESESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~----~~--~~~lf~~~~~~~~~~V~Fs~pnG~~La 209 (485)
...|.+++|..|+++=+.....+.+ .+....+..+.+ ++ +..+++ +.+...+- .||.+++
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~--------~~~~~~~~E~~~~s~~~~~~~~~l~~----~~I~gl~~--~dg~Lit 120 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADD--------DLPKFVIEEFEISSSLDDAKTVSLGT----KSIKGLKL--ADGTLIT 120 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCc--------ccccccccCCcccccccccccccccc----ccccchhh--cCCEEEE
Confidence 3468888888887764443322222 333333322222 11 011111 22224444 4787655
Q ss_pred EeeCCCcEEEeecCCCe----EEEEE-cCCcEEEEEEcCCceE-EEEEcCCCCeeEEEEecCCCeEEEEeec-------C
Q 011452 210 YSAQDSIYKVFDLKNYT----MLYSI-SDKNVQEIKISPGIML-LIFTKASGHVPLKILSIEDGTVLKSFNH-------L 276 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~----~l~tl-~~~~V~~VafSpg~~l-l~sss~~~D~tIklWdi~tG~~L~tl~~-------~ 276 (485)
|-.+|.+.+|..+.+. .+..+ .+..+..|.-+|...- .++++...-.-++|||+++++.+.+-+- .
T Consensus 121 -c~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 121 -CVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred -EecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 5669999999998443 23333 2456667777763333 2333322236899999999866554331 1
Q ss_pred Cccee--EEEEEecC-CCEEEEEeCCCcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 277 LHRNK--KVDFIEQF-NEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 277 ~~~~~--~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G 350 (485)
-=++| .+.|.+++ ..+++++..=+.+|+||.++++ +...+.--...++++...|.|.++.++. -+.+...|.+ |
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG 279 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc
Confidence 11233 88898643 4677778899999999999764 4444444456889999999999999999 9999999997 7
Q ss_pred cEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 351 ELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 351 ~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+++.. |.|-.+. +++|.-.|.+++|||++- |..+||.|++|-+.+.+.
T Consensus 280 kl~g~~~kg~tGs-----irsih~hp~~~~las~GL-----------DRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 280 KLLGCGLKGITGS-----IRSIHCHPTHPVLASCGL-----------DRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeeccccCCccCC-----cceEEEcCCCceEEeecc-----------ceeEEEeecccchhhhhh
Confidence 77665 8887766 999999999999999987 799999999997766543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-06 Score=82.24 Aligned_cols=216 Identities=14% Similarity=0.144 Sum_probs=147.2
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE-EEcCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~-tl~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
+..+.|++.+|.++.+.-..+.|..||.++++... .+.+ ...+++. +++.++++.. ..+.+.|+++|+....
T Consensus 2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~--~~G~~~~~~~g~l~v~~~----~~~~~~d~~~g~~~~~ 75 (246)
T PF08450_consen 2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG--PNGMAFDRPDGRLYVADS----GGIAVVDPDTGKVTVL 75 (246)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS--EEEEEEECTTSEEEEEET----TCEEEEETTTTEEEEE
T ss_pred CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC--CceEEEEccCCEEEEEEc----CceEEEecCCCcEEEE
Confidence 35678885489999998889999999998887543 3333 7888998 8888888754 3466669999966544
Q ss_pred eec-----CCcceeEEEEEecCCCEEEEEeCC--------CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEE-EE
Q 011452 273 FNH-----LLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFL-TF 338 (485)
Q Consensus 273 l~~-----~~~~~~~V~f~~~~~~~lls~s~D--------~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~lla-S~ 338 (485)
+.. .......+++. ++|...++.... +.|-.++.. ++..... .....++.++|+||++.|. +-
T Consensus 76 ~~~~~~~~~~~~~ND~~vd-~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 76 ADLPDGGVPFNRPNDVAVD-PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EEEETTCSCTEEEEEEEE--TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred eeccCCCcccCCCceEEEc-CCCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 432 23445588886 555544443322 446667777 6655544 3467899999999998664 55
Q ss_pred e-CCcEEEEeCC--Cc-E-----EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 339 R-NRTVAVWNFR--GE-L-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 339 s-D~TIklWd~~--G~-l-----l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+ .+.|..++++ +. + +..+.+-. ...-.+++.++|.+.++... .+.|.++|.. |+
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----g~pDG~~vD~~G~l~va~~~-----------~~~I~~~~p~-G~ 215 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGP-----GYPDGLAVDSDGNLWVADWG-----------GGRIVVFDPD-GK 215 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSS-----CEEEEEEEBTTS-EEEEEET-----------TTEEEEEETT-SC
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCC-----cCCCcceEcCCCCEEEEEcC-----------CCEEEEECCC-cc
Confidence 6 8888888883 43 2 12222221 11468999999998887654 5899999976 99
Q ss_pred EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE-cCCCCEEEEe
Q 011452 410 CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY-DEDRNEIYTG 474 (485)
Q Consensus 410 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f-spDg~~LaSg 474 (485)
.+..+.-.. ..+++++| -||.++|+-.
T Consensus 216 ~~~~i~~p~--------------------------------------~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 216 LLREIELPV--------------------------------------PRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEE-SS--------------------------------------SSEEEEEEESTTSSEEEEE
T ss_pred EEEEEcCCC--------------------------------------CCEEEEEEECCCCCEEEEE
Confidence 999886542 27899999 5887877644
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.4e-09 Score=107.65 Aligned_cols=118 Identities=16% Similarity=0.219 Sum_probs=93.2
Q ss_pred eEEEEEecCCCEEEE--EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC-cEEEEe
Q 011452 281 KKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG-ELVTSF 356 (485)
Q Consensus 281 ~~V~f~~~~~~~lls--~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G-~ll~tl 356 (485)
.++.|...+-.-+++ +++...+.+|.+..+.+...+ ||-..+..|+++||++.++|+. |..||+=...+ --+.+|
T Consensus 111 ~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~l-GhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 111 TAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPIL-GHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred ceeeeeeccceEEEEeecCCceeeeeecccccCcchhh-hhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 466676433333333 368899999999886666555 8999999999999999999999 99999988753 334443
Q ss_pred -ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 357 -EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 357 -~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-||... |..++..++ +.|+|+|. |+||++||+.+|+||.++.-
T Consensus 190 clGH~eF-----VS~isl~~~-~~LlS~sG-----------D~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 190 CLGHKEF-----VSTISLTDN-YLLLSGSG-----------DKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccccHhh-----eeeeeeccC-ceeeecCC-----------CCcEEEEecccCCcccccch
Confidence 489988 999999876 55899886 79999999999999987743
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.2e-08 Score=102.06 Aligned_cols=317 Identities=16% Similarity=0.174 Sum_probs=195.0
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las 153 (485)
+.|+.-.+ .|-|+|. |.+||++++.+. -+-|.+|=|.+. |.-- -+.|--|-+..|...|+.
T Consensus 5 e~fk~~~~---~c~fSp~-------------g~yiAs~~~yrl-viRd~~tlq~~q-lf~c-ldki~yieW~ads~~ilC 65 (447)
T KOG4497|consen 5 ELFKSLNP---FCSFSPC-------------GNYIASLSRYRL-VIRDSETLQLHQ-LFLC-LDKIVYIEWKADSCHILC 65 (447)
T ss_pred HHHHhcCC---ceeECCC-------------CCeeeeeeeeEE-EEeccchhhHHH-HHHH-HHHhhheeeeccceeeee
Confidence 44444444 4555888 999999998843 355555333222 1110 124667778888887776
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
+- +. + ..+.+|++.+.+... ++ . +...-..++.+| ||| .+|.++..|--|.||.|.|.++.+.-+
T Consensus 66 ~~-yk-~-------~~vqvwsl~Qpew~c--kI-d-eg~agls~~~WS-PdgrhiL~tseF~lriTVWSL~t~~~~~~~~ 131 (447)
T KOG4497|consen 66 VA-YK-D-------PKVQVWSLVQPEWYC--KI-D-EGQAGLSSISWS-PDGRHILLTSEFDLRITVWSLNTQKGYLLPH 131 (447)
T ss_pred ee-ec-c-------ceEEEEEeecceeEE--Ee-c-cCCCcceeeeEC-CCcceEeeeecceeEEEEEEeccceeEEecc
Confidence 44 22 2 378899986554311 00 1 111223367898 799 778888999999999999877655444
Q ss_pred -CCcEEEEEEcCCceEEEEEcCCCC--eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 233 -DKNVQEIKISPGIMLLIFTKASGH--VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 233 -~~~V~~VafSpg~~ll~sss~~~D--~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
.+++..++|+|+++.++-.+.- | .-+.|..-..-++++.|+-.+--...+.++ | ++.-+-+||---
T Consensus 132 pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i~~c~~W~ll~~f~~dT~DltgieWs-P---------dg~~laVwd~~L 200 (447)
T KOG4497|consen 132 PKTNVKGYAFHPDGQFCAILSRR-DCKDYVQISSCKAWILLKEFKLDTIDLTGIEWS-P---------DGNWLAVWDNVL 200 (447)
T ss_pred cccCceeEEECCCCceeeeeecc-cHHHHHHHHhhHHHHHHHhcCCCcccccCceEC-C---------CCcEEEEecchh
Confidence 4689999999977776554432 2 233344333445566666433334577776 4 445666776321
Q ss_pred CeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeC-C----CcEEE----------------------------
Q 011452 310 FELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF-R----GELVT---------------------------- 354 (485)
Q Consensus 310 g~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~-~----G~ll~---------------------------- 354 (485)
. -+++.-|- -.+..++++|-+|+|+-|+ |+.+||-|- + ||.++
T Consensus 201 e--ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs 278 (447)
T KOG4497|consen 201 E--YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS 278 (447)
T ss_pred h--heeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence 1 11111121 3577899999999999999 999988651 1 22111
Q ss_pred ----EeecCC-------------------------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 355 ----SFEDHL-------------------------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 355 ----tl~gH~-------------------------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.++.|. -..|-|.+--++||+|.+++|+-.. ..-+.+-|||+
T Consensus 279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd---------~~PnalW~Wdl 349 (447)
T KOG4497|consen 279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND---------KYPNALWLWDL 349 (447)
T ss_pred cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC---------CCCceEEEEec
Confidence 011111 1234467888999999999998642 23467999998
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.-+.-+.|.. +| .|.+..++|....|+-.-...-+.+|.
T Consensus 350 q~l~l~avLiQ------------------------k~---------------piraf~WdP~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 350 QNLKLHAVLIQ------------------------KH---------------PIRAFEWDPGRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred hhhhhhhhhhh------------------------cc---------------ceeEEEeCCCCceEEEEcCCceEEEEc
Confidence 85444333322 22 899999999998877655444466663
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.6e-07 Score=97.28 Aligned_cols=168 Identities=12% Similarity=0.054 Sum_probs=102.9
Q ss_pred CcEEEEEEcCCce-EEEEEcCC-CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-e--CCCcEEEEECC
Q 011452 234 KNVQEIKISPGIM-LLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-Q--ENENLQILDVR 308 (485)
Q Consensus 234 ~~V~~VafSpg~~-ll~sss~~-~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s--~D~tIkIWDv~ 308 (485)
..+..-+|||++. ++.+.+.. ....|.++|+.+|+...-.. ..+.+...+|+ ||+.+|+.. + .+..|-++|+.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~S-PDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVS-KDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEEC-CCCCEEEEEEccCCCcEEEEEECC
Confidence 4677899999665 45543433 35689999999997654332 22445567786 788888875 3 34567777999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEeC--C--cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFRN--R--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~sD--~--TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
+++..+... +......-.|+|||+.|+=.+| + .|-+.|+. |+..+ +.....+ ...|||||++|+-.
T Consensus 266 ~g~~~~LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~g~~-------~~~~SPDG~~Ia~~ 336 (419)
T PRK04043 266 TKTLTQITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFHGKN-------NSSVSTYKNYIVYS 336 (419)
T ss_pred CCcEEEccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccCCCc-------CceECCCCCEEEEE
Confidence 888655433 3322234469999987775553 3 67777886 55422 2211111 24899999999877
Q ss_pred ecCCCCCCCCcC-CCCeEEEEeCCCCeEEEEecC
Q 011452 384 CKADSDDPLAEG-NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 384 s~d~~~d~~~~~-~DgtIklWdl~TGk~l~tl~g 416 (485)
+.....+ .+ ....|.+-|+.+|+. ..|..
T Consensus 337 ~~~~~~~---~~~~~~~I~v~d~~~g~~-~~LT~ 366 (419)
T PRK04043 337 SRETNNE---FGKNTFNLYLISTNSDYI-RRLTA 366 (419)
T ss_pred EcCCCcc---cCCCCcEEEEEECCCCCe-EECCC
Confidence 6520000 00 113577778887764 44544
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-08 Score=103.50 Aligned_cols=224 Identities=12% Similarity=0.181 Sum_probs=149.0
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEe----cCEEEEEeCCCeEEeeeccc-CcEE---------------
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA----RDIVFALAQSGVCAAFCRET-NQRI--------------- 128 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s----~~~ias~s~dgtiklW~~~t-G~~l--------------- 128 (485)
.+..+.+|+-|+|.-.+.-. |--..+|..|..- ...+.....|.|+|+|.+.. +...
T Consensus 61 ey~~~t~fqshepEFDYLkS---leieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~ 137 (433)
T KOG1354|consen 61 EYNFQTEFQSHEPEFDYLKS---LEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTIT 137 (433)
T ss_pred ceeeeeeeeccCcccchhhh---hhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccc
Confidence 45667888999997766443 3456677777766 34455566799999998652 1111
Q ss_pred -------------------EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee
Q 011452 129 -------------------CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (485)
Q Consensus 129 -------------------~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~ 189 (485)
+.....|.--|+||.+|.|+++++| .|| =.|.||.+.- .++.+.+-.-
T Consensus 138 ~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lS-----ADd------LRINLWnlei--~d~sFnIVDI 204 (433)
T KOG1354|consen 138 SLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLS-----ADD------LRINLWNLEI--IDQSFNIVDI 204 (433)
T ss_pred eeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEee-----ccc------eeeeeccccc--cCCceeEEEc
Confidence 1112235556999999999999987 256 4677887621 1211111110
Q ss_pred -----ccc-cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-E-----EEEEcC------------CcEEEEEEcCCc
Q 011452 190 -----ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-M-----LYSISD------------KNVQEIKISPGI 245 (485)
Q Consensus 190 -----~~~-~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~-----l~tl~~------------~~V~~VafSpg~ 245 (485)
+.+ --+.+-+|+|..-.+++++|.-|+|||-|+.... | ++..+. ..|.+|+||+.|
T Consensus 205 KP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 205 KPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG 284 (433)
T ss_pred cccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC
Confidence 111 1133679998788999999999999999997433 2 222221 258899999877
Q ss_pred eEEEEEcCCCCeeEEEEec-CCCeEEEEeecCCc------------ce---eEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 246 MLLIFTKASGHVPLKILSI-EDGTVLKSFNHLLH------------RN---KKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi-~tG~~L~tl~~~~~------------~~---~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
.++.+ . +-.||||||+ ...+.+.+++-|.. .+ +.+.|+ -++..+++||.....+++++..
T Consensus 285 ryils--R-Dyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s-g~~~~v~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 285 RYILS--R-DYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS-GNDSYVMTGSYNNVFRVFNLAR 360 (433)
T ss_pred cEEEE--e-ccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc-CCcceEecccccceEEEecCCC
Confidence 66655 2 2389999999 67778888875421 12 367775 4456888899999999999876
Q ss_pred Cee
Q 011452 310 FEL 312 (485)
Q Consensus 310 g~~ 312 (485)
|..
T Consensus 361 gsk 363 (433)
T KOG1354|consen 361 GSK 363 (433)
T ss_pred Ccc
Confidence 643
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-08 Score=108.26 Aligned_cols=186 Identities=13% Similarity=0.124 Sum_probs=135.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCeEEEEEcCCcEEEEEEcCCce
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKNVQEIKISPGIM 246 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~~~~V~~VafSpg~~ 246 (485)
+-++||+...+++ .++|- |.. +.+.-+|+-.|.|. .+.++....-.++ ..-|-|..
T Consensus 15 g~l~iw~t~~~~~----------------~~e~~-p~~----~~s~t~~~~~w~L~~~~s~~k~~~~~~~--~~~s~~t~ 71 (541)
T KOG4547|consen 15 GRLRIWDTAKNQL----------------QQEFA-PIA----SLSGTCTYTKWGLSADYSPMKWLSLEKA--KKASLDTS 71 (541)
T ss_pred CeEEEEEccCcee----------------eeeec-cch----hccCcceeEEEEEEeccchHHHHhHHHH--hhccCCce
Confidence 5899999877765 23453 443 33456899999864 3444443321111 11121211
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
.++-+. .-+.|-+.++..|++-..|. .|-+.+..+... +.-+.|-+++.|..+-.|+...+..++.....+..+.
T Consensus 72 ~lvlgt--~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~-~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~ 148 (541)
T KOG4547|consen 72 MLVLGT--PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDA-QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS 148 (541)
T ss_pred EEEeec--CCccEEEEEecCCeEEEEEecCCCCCcceeeecc-cccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence 122111 12566677778888888887 455666676654 4556788889999999999999999999999999999
Q ss_pred EEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC-----CCEEEEEec
Q 011452 325 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD-----QDLIISYCK 385 (485)
Q Consensus 325 avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD-----G~~LaS~s~ 385 (485)
++..+|||..|++++ ++||+||++ +|.+.+|+||... |+.+.|.-+ |+++.|...
T Consensus 149 sl~is~D~~~l~~as-~~ik~~~~~~kevv~~ftgh~s~-----v~t~~f~~~~~g~~G~~vLssa~ 209 (541)
T KOG4547|consen 149 SLCISPDGKILLTAS-RQIKVLDIETKEVVITFTGHGSP-----VRTLSFTTLIDGIIGKYVLSSAA 209 (541)
T ss_pred eEEEcCCCCEEEecc-ceEEEEEccCceEEEEecCCCcc-----eEEEEEEEeccccccceeeeccc
Confidence 999999999999876 789999996 9999999999988 999999998 888888653
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.6e-07 Score=91.90 Aligned_cols=229 Identities=12% Similarity=0.074 Sum_probs=142.0
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
++..++.|+.++.+|.+..+|.++|+.+-.... .. .+.+.-.- .++.++.++ .+ ..+..+|+.+|+.
T Consensus 101 p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~-~~~~~p~v-~~~~v~v~~----~~------g~l~a~d~~tG~~ 167 (377)
T TIGR03300 101 VGADGGLVFVGTEKGEVIALDAEDGKELWRAKL-SS-EVLSPPLV-ANGLVVVRT----ND------GRLTALDAATGER 167 (377)
T ss_pred eEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc-Cc-eeecCCEE-ECCEEEEEC----CC------CeEEEEEcCCCce
Confidence 344588899999999999999999998765443 22 22221111 234555433 22 4677888888886
Q ss_pred CcccceeeeccccCc------eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------Cc---EEEEEEcC--
Q 011452 181 DAGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KN---VQEIKISP-- 243 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~------~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------~~---V~~VafSp-- 243 (485)
+|+......+ ....+. ++ .+..+..++.+..+|+++|+.+.+..- .. +..+.-+|
T Consensus 168 -----~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~ 239 (377)
T TIGR03300 168 -----LWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV 239 (377)
T ss_pred -----eeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE
Confidence 4553211100 111232 34 455667789999999999998765421 00 11111112
Q ss_pred -CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-
Q 011452 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM- 321 (485)
Q Consensus 244 -g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~- 321 (485)
++.+.+.+ .++.+..+|.++|+.+...+. ....... ..++++.+++.|+.|..+|..+|+.+-....-..
T Consensus 240 ~~~~vy~~~---~~g~l~a~d~~tG~~~W~~~~--~~~~~p~---~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~ 311 (377)
T TIGR03300 240 DGGQVYAVS---YQGRVAALDLRSGRVLWKRDA--SSYQGPA---VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYR 311 (377)
T ss_pred ECCEEEEEE---cCCEEEEEECCCCcEEEeecc--CCccCce---EeCCEEEEECCCCeEEEEECCCCcEEEccccccCC
Confidence 45555543 347999999999999887762 1111222 2378888889999999999999987654321111
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
...+.+. .+..|..++ |+.|.++|.+ |+++.+++-+.
T Consensus 312 ~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~ 350 (377)
T TIGR03300 312 QLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG 350 (377)
T ss_pred ccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC
Confidence 1111112 345666677 9999999995 99999888654
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=108.69 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=85.0
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
.+...+|+ +|+..|+.-|.|+.+||+|..+-+++.+++.-++...+|+|||||+++|+|+ |.-|.||.+. ++.|..=
T Consensus 292 ~in~f~FS-~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARG 370 (636)
T KOG2394|consen 292 SINEFAFS-PDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARG 370 (636)
T ss_pred cccceeEc-CCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEec
Confidence 55677887 5888999999999999999999999999999999999999999999999999 9999999995 9999999
Q ss_pred ecCCCCCCCCCeeEEEECC
Q 011452 357 EDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSp 375 (485)
.||..| |+.|+|.|
T Consensus 371 qGHkSW-----Vs~VaFDp 384 (636)
T KOG2394|consen 371 QGHKSW-----VSVVAFDP 384 (636)
T ss_pred cccccc-----eeeEeecc
Confidence 999999 99999986
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-09 Score=105.05 Aligned_cols=134 Identities=11% Similarity=0.154 Sum_probs=104.8
Q ss_pred CCeeEEEEecCCCeEE----------EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eeE--EecccCC
Q 011452 255 GHVPLKILSIEDGTVL----------KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF--ELT--EVSRTEF 320 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L----------~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--~~~--~~l~gh~ 320 (485)
.++.+-+||+.+|..+ .....|...+.+|+|.+. -..=++++.+..+-.|+++.. .+. ....-..
T Consensus 173 Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~-~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn 251 (323)
T KOG0322|consen 173 ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASS-CDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN 251 (323)
T ss_pred cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechh-hcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence 3478999999998433 334467788889998643 234466777788888887743 321 1111223
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
-.|..+.+-||++.|||++ |+-|||++-+ +..+..|+-|... |++||||||-.++|++|+ |+
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsag-----vn~vAfspd~~lmAaask-----------D~ 315 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAG-----VNAVAFSPDCELMAAASK-----------DA 315 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcc-----eeEEEeCCCCchhhhccC-----------Cc
Confidence 4678889999999999999 9999999996 9999999999976 999999999999999998 79
Q ss_pred eEEEEeC
Q 011452 399 SINISNI 405 (485)
Q Consensus 399 tIklWdl 405 (485)
+|-||++
T Consensus 316 rISLWkL 322 (323)
T KOG0322|consen 316 RISLWKL 322 (323)
T ss_pred eEEeeec
Confidence 9999985
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.9e-07 Score=84.67 Aligned_cols=212 Identities=17% Similarity=0.130 Sum_probs=133.4
Q ss_pred EEEEeEeccCCcCcccceeeeccc-cCceEE--EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFESESL-KWPGFV--EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~-~~~~~V--~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg 244 (485)
++..+|.++|+. +|+.... .....+ .+. .+|. |..++.++.+..||.++|+.+.+.. ...+.......+
T Consensus 4 ~l~~~d~~tG~~-----~W~~~~~~~~~~~~~~~~~-~~~~-v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~ 76 (238)
T PF13360_consen 4 TLSALDPRTGKE-----LWSYDLGPGIGGPVATAVP-DGGR-VYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDG 76 (238)
T ss_dssp EEEEEETTTTEE-----EEEEECSSSCSSEEETEEE-ETTE-EEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEET
T ss_pred EEEEEECCCCCE-----EEEEECCCCCCCccceEEE-eCCE-EEEEcCCCEEEEEECCCCCEEEEeeccccccceeeecc
Confidence 556677677775 5665210 112233 342 2454 4445789999999999999887664 222111112234
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEe-ecCC---c--ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSF-NHLL---H--RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~---~--~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
+++++.. .++.|..+|.++|+++.++ .... . .....++ .++.++++..++.|..+|+++|+.+-....
T Consensus 77 ~~v~v~~---~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 77 GRVYVGT---SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV---DGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp TEEEEEE---TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE---ETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred ccccccc---ceeeeEecccCCcceeeeeccccccccccccccCceE---ecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 4444443 2359999999999999985 3221 1 1112332 378888888899999999999998766644
Q ss_pred CCCc----------eEEEEEcCCCcEEEEEeCC-cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 319 EFMT----------PSAFIFLYENQLFLTFRNR-TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 319 h~~~----------v~avaFspdg~llaS~sD~-TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
+... +.+-.+..++.++++..++ .+.+ |++ |+.+.+..-+. +..+ ..+++..|+.++.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~~~w~~~~~~-------~~~~-~~~~~~~l~~~~~- 220 (238)
T PF13360_consen 151 GEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGEKLWSKPISG-------IYSL-PSVDGGTLYVTSS- 220 (238)
T ss_dssp STT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTEEEEEECSS--------ECEC-EECCCTEEEEEET-
T ss_pred CCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCCEEEEecCCC-------ccCC-ceeeCCEEEEEeC-
Confidence 3311 1233344466777666666 5777 996 88664333111 2221 4578888888875
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++.|..||+.||+.+.+
T Consensus 221 ----------~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 221 ----------DGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ----------TTEEEEEETTTTEEEEE
T ss_pred ----------CCEEEEEECCCCCEEeE
Confidence 79999999999998764
|
... |
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.9e-08 Score=98.03 Aligned_cols=210 Identities=8% Similarity=-0.001 Sum_probs=145.2
Q ss_pred CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC---CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC-
Q 011452 233 DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED---GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV- 307 (485)
Q Consensus 233 ~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t---G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv- 307 (485)
-..|.+-||++ ..++|++ ... ..|.|..... -+..++|+.|-..+..|++. |...+|++++.|.+-.+|..
T Consensus 10 ~~pitchAwn~drt~iAv~-~~~--~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWa-p~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVS-PNN--HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWA-PKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred cCceeeeeecCCCceEEec-cCC--ceEEEEEecCCCCceeceehhhhCcceeEEeec-CCCCceeEccCCCCccccccC
Confidence 46899999996 4455544 433 4565655443 45788999999999999997 55679999999999999998
Q ss_pred CCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 308 RNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 308 ~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
..++- .-++.-|......|-++|.+.+||.+| -+.|.||-+++|---=...|..--....|.++.+.|++-+|+.||
T Consensus 86 ~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 86 SGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 44443 333445788999999999999999999 999999998766321111121111112389999999999999998
Q ss_pred cCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCC-C----CCCCccccccccccccccchhcccCCe
Q 011452 385 KADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGD-Y----SSGSCNVKKHSHASRIRSTVAEALEDI 459 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~l~~V 459 (485)
. |+..|++..- ++-+..-. |+.+=| + ++++=+..+ -.+|
T Consensus 166 ~-----------D~k~rVfSay----IK~Vdekp-------ap~pWgsk~PFG~lm~E~~~~--------------ggwv 209 (361)
T KOG1523|consen 166 T-----------DGKCRVFSAY----IKGVDEKP-------APTPWGSKMPFGQLMSEASSS--------------GGWV 209 (361)
T ss_pred c-----------CcceeEEEEe----eeccccCC-------CCCCCccCCcHHHHHHhhccC--------------CCce
Confidence 7 7999998742 22222111 111111 0 011100000 1399
Q ss_pred EEEEEcCCCCEEEEecCCCcEEE
Q 011452 460 TALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 460 ~sl~fspDg~~LaSgs~DgtVkl 482 (485)
..|.|+|+|..|+=.+.|.+|-+
T Consensus 210 h~v~fs~sG~~lawv~Hds~v~~ 232 (361)
T KOG1523|consen 210 HGVLFSPSGNRLAWVGHDSTVSF 232 (361)
T ss_pred eeeEeCCCCCEeeEecCCCceEE
Confidence 99999999999999999999865
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-07 Score=101.01 Aligned_cols=277 Identities=10% Similarity=0.163 Sum_probs=187.1
Q ss_pred HHHhhhccccccccccCCCCcccccccccccccceEEEEEecCEE-EEEeCCCeEEeeecccCcEEEEeecCCcccEEEE
Q 011452 64 QERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIV-FALAQSGVCAAFCRETNQRICFLNVTADEVIRSL 142 (485)
Q Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~i-as~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv 142 (485)
++.++.|.|-+.|++-.......+ +|+ |++| |+|-+--.||+||+. +--|++=..-..++|.=.
T Consensus 36 ~~~~~rieLiQdfe~p~ast~ik~-s~D-------------GqY~lAtG~YKP~ikvydla-nLSLKFERhlDae~V~fe 100 (703)
T KOG2321|consen 36 VDYRQRIELIQDFEMPTASTRIKV-SPD-------------GQYLLATGTYKPQIKVYDLA-NLSLKFERHLDAEVVDFE 100 (703)
T ss_pred hHHHHHHHHHHhcCCccccceeEe-cCC-------------CcEEEEecccCCceEEEEcc-cceeeeeecccccceeEE
Confidence 678888999998887555444444 666 7765 677888999999976 555654333234445443
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc---eEEEEeCCCCeEEEEeeCCCcEEE
Q 011452 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKV 219 (485)
Q Consensus 143 ~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~---~~V~Fs~pnG~~Las~s~D~tiKl 219 (485)
-++-|-..++. --.| |+|.+-. .-|.- +.. .-| ..+.++.|+..++.-|+....||
T Consensus 101 iLsDD~SK~v~----L~~D------R~IefHa-k~G~h------y~~---RIP~~GRDm~y~~~scDly~~gsg~evYR- 159 (703)
T KOG2321|consen 101 ILSDDYSKSVF----LQND------RTIEFHA-KYGRH------YRT---RIPKFGRDMKYHKPSCDLYLVGSGSEVYR- 159 (703)
T ss_pred EeccchhhheE----eecC------ceeeehh-hcCee------eee---ecCcCCccccccCCCccEEEeecCcceEE-
Confidence 33333222211 1122 4444432 22221 111 111 13566667777777666665555
Q ss_pred eecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC------c-----ceeEEEEE
Q 011452 220 FDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL------H-----RNKKVDFI 286 (485)
Q Consensus 220 Wdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~------~-----~~~~V~f~ 286 (485)
.+|+.|..|..+. ...++.|.++|-.-|++++. .++.|..||..+-....++..-. + .+.++.|.
T Consensus 160 lNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt--~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~ 237 (703)
T KOG2321|consen 160 LNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT--EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR 237 (703)
T ss_pred EEccccccccccccccccceeeeecCccceEEecc--cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEec
Confidence 5999999998886 36899999998444444433 35899999998877777775322 2 26788985
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCC--CcEEEEEeCCcEEEEeCC-CcEEEEeecCCCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYE--NQLFLTFRNRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspd--g~llaS~sD~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
.+|=.+++|..+|.|-|+|+++.+++.+- .+....+..+.|.+. +..++|..-.++||||-. |+....++--.
T Consensus 238 -d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~-- 314 (703)
T KOG2321|consen 238 -DDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPTS-- 314 (703)
T ss_pred -CCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeeccccC--
Confidence 34567777889999999999999877664 234558888888665 566777778899999985 99998887533
Q ss_pred CCCCCeeEEEECCCCCEEEEEec
Q 011452 363 HPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.++.+++-|++-++..+-.
T Consensus 315 ----~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 315 ----DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred ----CcCceeeecCCceEEEecC
Confidence 2899999999999998854
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.8e-07 Score=94.74 Aligned_cols=200 Identities=10% Similarity=0.049 Sum_probs=129.0
Q ss_pred eEEEEeCCCCeE-EEEeeCC---CcEEEeecCCCeEEEEE-cCCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeE
Q 011452 196 GFVEFDDVNGKV-LTYSAQD---SIYKVFDLKNYTMLYSI-SDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 196 ~~V~Fs~pnG~~-Las~s~D---~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.+-.|+ |||+. +++.+.+ ..|.++|+.+|+...-. ....+...+|||++ .++.+.+.+.+..|-++|+.+|+
T Consensus 191 ~~p~wS-pDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~- 268 (419)
T PRK04043 191 IFPKWA-NKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT- 268 (419)
T ss_pred EeEEEC-CCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-
Confidence 367887 79984 7765543 56888899988743322 23456678899866 56655555556778888998887
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C-----
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N----- 340 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D----- 340 (485)
++.+..+........|+ |||.+|+..+ ..+ .|-+.|+.+|+..+...... ....|||||+.|+-.+ .
T Consensus 269 ~~~LT~~~~~d~~p~~S-PDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~---~~~~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 269 LTQITNYPGIDVNGNFV-EDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK---NNSSVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred EEEcccCCCccCccEEC-CCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC---cCceECCCCCEEEEEEcCCCccc
Confidence 44455333333355676 7888888875 333 56777999888766543211 1248999999988766 3
Q ss_pred --C--cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 341 --R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 341 --~--TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+ .|.+.|+++...+.|+... . .....|||||+.|+-.+.. +....+-+.++. |.-...|..
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~~-~-----~~~p~~SPDG~~I~f~~~~--------~~~~~L~~~~l~-g~~~~~l~~ 409 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTANG-V-----NQFPRFSSDGGSIMFIKYL--------GNQSALGIIRLN-YNKSFLFPL 409 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCCC-C-----cCCeEECCCCCEEEEEEcc--------CCcEEEEEEecC-CCeeEEeec
Confidence 2 4666687644445565542 1 2368899999998877641 222447777764 655555543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.3e-09 Score=122.76 Aligned_cols=179 Identities=15% Similarity=0.190 Sum_probs=139.9
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
|--.+-.+||+|+.||+|....++.+..+. ...|+.+.|+ .|++..++ +.|+-|-+|.+. -+...+-+-|.-
T Consensus 2218 p~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~---d~dg~l~l~q~~-pk~~~s~qchnk 2293 (2439)
T KOG1064|consen 2218 PSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIV---DGDGDLSLWQAS-PKPYTSWQCHNK 2293 (2439)
T ss_pred CCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeee---ccCCceeecccC-CcceeccccCCc
Confidence 555677889999999999999888887775 3579999999 58888776 677999999985 455555565555
Q ss_pred ceeEEEEEecCCCEEEEEe---CCCcEEEEECC-CC--eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 279 RNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-NF--ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~-tg--~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G 350 (485)
....+.|+. .-++++| +++++-+||.- .+ -++. ..|...++.+++-|.-|+|+||+ +|.|+|||++ .
T Consensus 2294 ~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2294 ALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred cccceeeee---hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence 556788873 4455543 89999999944 22 2344 67999999999999999999999 9999999996 8
Q ss_pred cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++.+++.. ++ -..++++++. .|+||||++.+-.+++++..
T Consensus 2369 ql~h~~~~---~~------------~~~~f~~~ss-----------~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2369 QLRHTFQA---LD------------TREYFVTGSS-----------EGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred HHHHHhhh---hh------------hhheeeccCc-----------ccceEEEEccccchhhcCch
Confidence 88877754 21 2467888875 69999999988788887764
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=4.2e-06 Score=79.69 Aligned_cols=212 Identities=16% Similarity=0.124 Sum_probs=134.9
Q ss_pred CCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 213 QDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
.+++|..||+.+|+.+.+..- ......++.+++.++++. .++.|..||+.||+.+.++.. ...+..... .
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--~ 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVAS---GDGNLYALDAKTGKVLWRFDL-PGPISGAPV--V 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEE---TTSEEEEEETTTSEEEEEEEC-SSCGGSGEE--E
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEc---CCCEEEEEECCCCCEEEEeec-cccccceee--e
Confidence 378999999999999877641 222222443566666652 347999999999999988874 122221111 3
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEec-ccCC---CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVS-RTEF---MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW 362 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~---~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~ 362 (485)
.++.+++...|+.|..+|..+|+.+-.. .... ..........++..++.+. ++.|...|.+ |+++.....+...
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 154 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR 154 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence 3678888888889999999999987763 3221 1112222333366666666 9999999985 9998888764421
Q ss_pred CCCCC------eeEEEECCCCCEEEEEecCCCCCCCCcCCCC-eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 363 HPDCN------TNNIYITSDQDLIISYCKADSDDPLAEGNAG-SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 363 ~~~~~------v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg-tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
. ... ...-.+..++.+.++ +. ++ .+.+ |+.+|+.+.....+
T Consensus 155 ~-~~~~~~~~~~~~~~~~~~~~v~~~-~~-----------~g~~~~~-d~~tg~~~w~~~~~------------------ 202 (238)
T PF13360_consen 155 G-SSPISSFSDINGSPVISDGRVYVS-SG-----------DGRVVAV-DLATGEKLWSKPIS------------------ 202 (238)
T ss_dssp S-S--EEEETTEEEEEECCTTEEEEE-CC-----------TSSEEEE-ETTTTEEEEEECSS------------------
T ss_pred C-CcceeeecccccceEEECCEEEEE-cC-----------CCeEEEE-ECCCCCEEEEecCC------------------
Confidence 0 000 123333345544444 33 35 5888 99999977544321
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+ ...+++..|+.++.|+.|..||.
T Consensus 203 ----------------------~~~~-~~~~~~~~l~~~~~~~~l~~~d~ 229 (238)
T PF13360_consen 203 ----------------------GIYS-LPSVDGGTLYVTSSDGRLYALDL 229 (238)
T ss_dssp -----------------------ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred ----------------------CccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence 2222 24678899999999999999873
|
... |
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=98.90 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=126.8
Q ss_pred EEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc
Q 011452 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 239 VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~ 317 (485)
..|||+|..+++.+. ..+-|=|.+|-++++-|.- +..+.-+.+. .+...++.+ ..|+.|++|++...+-..-+.
T Consensus 14 c~fSp~g~yiAs~~~---yrlviRd~~tlq~~qlf~c-ldki~yieW~-ads~~ilC~~yk~~~vqvwsl~Qpew~ckId 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSR---YRLVIRDSETLQLHQLFLC-LDKIVYIEWK-ADSCHILCVAYKDPKVQVWSLVQPEWYCKID 88 (447)
T ss_pred eeECCCCCeeeeeee---eEEEEeccchhhHHHHHHH-HHHhhheeee-ccceeeeeeeeccceEEEEEeecceeEEEec
Confidence 578987777766543 4566667766555444432 1233334443 345566665 799999999999988777776
Q ss_pred cCCCceEEEEEcCCCcEEE-EEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC-CC-----
Q 011452 318 TEFMTPSAFIFLYENQLFL-TFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD-SD----- 389 (485)
Q Consensus 318 gh~~~v~avaFspdg~lla-S~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~-~~----- 389 (485)
..+..+.++.+||||+.++ ++. |-.|.+|.+..+-..-+ .||..++..++|+|||++.+-.+.-| +|
T Consensus 89 eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-----~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 89 EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-----PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS 163 (447)
T ss_pred cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-----cccccCceeEEECCCCceeeeeecccHHHHHHHH
Confidence 6777899999999996555 455 99999999953322211 12333378999999999999887643 10
Q ss_pred ----------------C--CCC-cCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccccc
Q 011452 390 ----------------D--PLA-EGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRS 450 (485)
Q Consensus 390 ----------------d--~~~-~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (485)
| ++. ..+++.+-+||-- +-.++-+-+ .+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~---Leykv~aYe--------------------------~~---- 210 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV---LEYKVYAYE--------------------------RG---- 210 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecch---hhheeeeee--------------------------ec----
Confidence 1 111 1123455666521 111111111 00
Q ss_pred chhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 451 TVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 451 ~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..|-.++|||.++.|+-||.|+.+||=
T Consensus 211 ------lG~k~v~wsP~~qflavGsyD~~lrvl 237 (447)
T KOG4497|consen 211 ------LGLKFVEWSPCNQFLAVGSYDQMLRVL 237 (447)
T ss_pred ------cceeEEEeccccceEEeeccchhhhhh
Confidence 268889999999999999999999873
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-06 Score=86.64 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=138.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcE-EEeecCCCeEEEEEcC---Cc-EEEEEEcCCceEEEEEcCCC---CeeEEEEecC-CC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSISD---KN-VQEIKISPGIMLLIFTKASG---HVPLKILSIE-DG 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~ti-KlWdl~~g~~l~tl~~---~~-V~~VafSpg~~ll~sss~~~---D~tIklWdi~-tG 267 (485)
.++.+|..+..+|.+-.-++. -+||..+|+.+..+.. .. -=--.|||++.+|.+...+. .+-|-|||.+ +-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 456654366677777666654 4899999998888752 11 22367999887777755443 4899999998 55
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEE--e-----C-----------CCcEEEEECCCCeeEEe--c--ccCCCceEE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVK--Q-----E-----------NENLQILDVRNFELTEV--S--RTEFMTPSA 325 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~--s-----~-----------D~tIkIWDv~tg~~~~~--l--~gh~~~v~a 325 (485)
+.+..|..|.-.--.+.+. ||++.|+++ + + +-++-..|..+|++++. + .-|+..+.=
T Consensus 89 ~ri~E~~s~GIGPHel~l~-pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 89 RRIGEFPSHGIGPHELLLM-PDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred EEEeEecCCCcChhhEEEc-CCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 6677777532222266665 778788875 2 1 24567789999998887 5 448889999
Q ss_pred EEEcCCCcEEEEEe-CC-------cEEEEeCCCcEEEEeecCCC-C-CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 326 FIFLYENQLFLTFR-NR-------TVAVWNFRGELVTSFEDHLL-W-HPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 326 vaFspdg~llaS~s-D~-------TIklWd~~G~ll~tl~gH~~-~-~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
+++.++|..+...- .+ -|-+++. |+.++.+..-.. | .-..++-||+|++||.+++..|.
T Consensus 168 La~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP---------- 236 (305)
T PF07433_consen 168 LAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP---------- 236 (305)
T ss_pred EEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECC----------
Confidence 99999998766553 22 2233332 332333322110 0 11134889999999999988775
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011452 396 NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~g 416 (485)
.-+.+-+||..||+++....-
T Consensus 237 rGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 237 RGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCCEEEEEECCCCCEeecccc
Confidence 478999999999999876543
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.3e-08 Score=98.18 Aligned_cols=245 Identities=14% Similarity=0.132 Sum_probs=152.7
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEE----EcC--------------CcEEEEEEc-CCc---eEEEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYS----ISD--------------KNVQEIKIS-PGI---MLLIF 250 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~t----l~~--------------~~V~~VafS-pg~---~ll~s 250 (485)
-+.+|+|+ ..|.+||+|...|-|-++.-.. +-|-|. +++ ..|.+|.+- |++ .|+++
T Consensus 28 ~ItaVefd-~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlst 106 (460)
T COG5170 28 KITAVEFD-ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLST 106 (460)
T ss_pred eeeEEEec-cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEec
Confidence 35589998 6899999998889998887542 324332 211 358888888 533 34443
Q ss_pred EcCCCCeeEEEEecCCCe-------------------EEE--------E---------------e-ecCCcceeEEEEEe
Q 011452 251 TKASGHVPLKILSIEDGT-------------------VLK--------S---------------F-NHLLHRNKKVDFIE 287 (485)
Q Consensus 251 ss~~~D~tIklWdi~tG~-------------------~L~--------t---------------l-~~~~~~~~~V~f~~ 287 (485)
.|+|||||.+-... .+. . . +.|.-++.++.|..
T Consensus 107 ----NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns 182 (460)
T COG5170 107 ----NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS 182 (460)
T ss_pred ----CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC
Confidence 56999999875420 000 0 1 23555677888853
Q ss_pred cCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCC-----ceEEEEEcCCCcEEE--EEeCCcEEEEeCC-Cc-EE--
Q 011452 288 QFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFM-----TPSAFIFLYENQLFL--TFRNRTVAVWNFR-GE-LV-- 353 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~-----~v~avaFspdg~lla--S~sD~TIklWd~~-G~-ll-- 353 (485)
+...+.+++|-.|.||++.-- --+--...|.+ -|++.-|+|+.-.+. |+|.|+|||-|++ .. |.
T Consensus 183 --D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 183 --DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred --chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 344455568999999998732 22333455544 567778999765433 3349999999986 22 22
Q ss_pred -EEeecCCCCCC-------CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCc
Q 011452 354 -TSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAEN 424 (485)
Q Consensus 354 -~tl~gH~~~~~-------~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~ 424 (485)
.+|+....... -..+..+.|||+|+||+|-+- -||+|||+.- .+|+.|+.-|.+.+.
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy------------ltvkiwDvnm~k~pikTi~~h~~l~~-- 326 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY------------LTVKIWDVNMAKNPIKTIPMHCDLMD-- 326 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc------------ceEEEEecccccCCceeechHHHHHH--
Confidence 22221111000 012778999999999999764 8999999965 579999988864110
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
-+|++- ...+.-+=..+.||-|.+.+.|||..+..
T Consensus 327 ----------~l~d~Y-----------EnDaifdkFeisfSgd~~~v~sgsy~NNf 361 (460)
T COG5170 327 ----------ELNDVY-----------ENDAIFDKFEISFSGDDKHVLSGSYSNNF 361 (460)
T ss_pred ----------HHHhhh-----------hccceeeeEEEEecCCcccccccccccce
Confidence 001000 01111133458899999999999876543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.3e-08 Score=71.41 Aligned_cols=27 Identities=26% Similarity=0.632 Sum_probs=26.6
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+|+++.|+||+.|++|+|||
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1e-07 Score=98.18 Aligned_cols=137 Identities=13% Similarity=0.188 Sum_probs=104.3
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEE-EEeCCcEEEEeCCCcEE---------------E
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFL-TFRNRTVAVWNFRGELV---------------T 354 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~lla-S~sD~TIklWd~~G~ll---------------~ 354 (485)
.++++..|-+|||+|-.. .+...++ --+..|.+++|-|-+..-+ -++-+-|-||..+-.+. -
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl 190 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVL 190 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhhe
Confidence 455667899999999887 4444443 2355899999998776544 44477899998642211 1
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYS 433 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~ 433 (485)
.-.||. . |.++.+.+||..|+++|.+ |..|.|||+.||+++--. .+
T Consensus 191 ~~pgh~-p-----Vtsmqwn~dgt~l~tAS~g----------sssi~iWdpdtg~~~pL~~~g----------------- 237 (445)
T KOG2139|consen 191 QDPGHN-P-----VTSMQWNEDGTILVTASFG----------SSSIMIWDPDTGQKIPLIPKG----------------- 237 (445)
T ss_pred eCCCCc-e-----eeEEEEcCCCCEEeecccC----------cceEEEEcCCCCCcccccccC-----------------
Confidence 223452 3 8999999999999999984 789999999999987654 22
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+..++-|-|||||..|..+.-|++.+||+
T Consensus 238 ----------------------lgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 238 ----------------------LGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred ----------------------CCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 13788899999999999999999999994
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-05 Score=82.94 Aligned_cols=272 Identities=14% Similarity=0.127 Sum_probs=158.2
Q ss_pred EEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEE----------EEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIR----------SLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 102 ~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~----------sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+++++.|+.++.+|.+..+|.++|+.+=.........+. ++.. +++.|+.++ .+ ..+.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~----~~------g~l~ 133 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS----EK------GQVY 133 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc----CC------CEEE
Confidence 456889999999999999999999987654432211010 0111 234444433 22 3566
Q ss_pred EeEeccCCcCcccceeeeccccCceE-EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-cEEEE--EEcC---C
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGF-VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEI--KISP---G 244 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~-V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-~V~~V--afSp---g 244 (485)
-.|..+|++ +|+......+.+ -... ++++++ ++.|+.+.-.|.++|+.+...... ....+ .-+| +
T Consensus 134 ald~~tG~~-----~W~~~~~~~~~ssP~v~--~~~v~v-~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~ 205 (394)
T PRK11138 134 ALNAEDGEV-----AWQTKVAGEALSRPVVS--DGLVLV-HTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAF 205 (394)
T ss_pred EEECCCCCC-----cccccCCCceecCCEEE--CCEEEE-ECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEEC
Confidence 678788987 565522111111 1121 566555 566889999999999998777531 11000 1123 3
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc-------ceeEEEEEe-cCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-------RNKKVDFIE-QFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~-------~~~~V~f~~-~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
+.+++.. .++.+.-.|.++|+.+..++.... +...+...| ..++.+.+.+.|+.+...|+.+|+.+-..
T Consensus 206 ~~v~~~~---~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 206 GGAIVGG---DNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CEEEEEc---CCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEee
Confidence 4444442 346888899999998876542110 000111110 12678888889999999999999875433
Q ss_pred ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcC
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
. ......++ ..++.+++...|+.+...|.+ |+.+-+.+.-... ...+.++ -+ .+|..++.
T Consensus 283 ~--~~~~~~~~-~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~~sp~v-~~-g~l~v~~~---------- 343 (394)
T PRK11138 283 E--YGSVNDFA-VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR----LLTAPVL-YN-GYLVVGDS---------- 343 (394)
T ss_pred c--CCCccCcE-EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC----cccCCEE-EC-CEEEEEeC----------
Confidence 2 11111222 235555555459999999995 8876543321111 0122222 14 45555554
Q ss_pred CCCeEEEEeCCCCeEEEEecC
Q 011452 396 NAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~g 416 (485)
||.|...|..||+.+...+-
T Consensus 344 -~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 344 -EGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred -CCEEEEEECCCCCEEEEEEc
Confidence 79999999999999987754
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.8e-06 Score=92.95 Aligned_cols=278 Identities=12% Similarity=0.112 Sum_probs=172.8
Q ss_pred ceEEEEEe--cCEEE-----EEeCCCeEE-----eeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 97 KIIEIVAA--RDIVF-----ALAQSGVCA-----AFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 97 ~V~~i~~s--~~~ia-----s~s~dgtik-----lW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
.++++.|| +.+|. +-..+++.. +|+.+||.....++...... |+..|++|-.+-|-
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~~-W~~qfs~dEsl~ar----------- 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQNG-WVPQFSIDESLAAR----------- 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhcC-cccccccchhhhhh-----------
Confidence 57778887 66654 344555555 99999977766666544333 78999998654322
Q ss_pred cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC--e-----EEEEeeCCCcEEEeecCCCeE-----EEEEc
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG--K-----VLTYSAQDSIYKVFDLKNYTM-----LYSIS 232 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG--~-----~Las~s~D~tiKlWdl~~g~~-----l~tl~ 232 (485)
|-...+.++++-. .. ..+..-+...+...++|+ -+ - +..+.+.-..||||...-... ..++-
T Consensus 143 lv~nev~f~~~~~--f~---~~~~kl~~~~i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF 216 (566)
T KOG2315|consen 143 LVSNEVQFYDLGS--FK---TIQHKLSVSGITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF 216 (566)
T ss_pred hhcceEEEEecCC--cc---ceeeeeeccceeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc
Confidence 1124666766422 11 011111223333455552 21 1 112346678899998652111 12221
Q ss_pred -CCcEEEEEEcC-CceEEEEEcCCCC---------eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-e-CC
Q 011452 233 -DKNVQEIKISP-GIMLLIFTKASGH---------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-Q-EN 299 (485)
Q Consensus 233 -~~~V~~VafSp-g~~ll~sss~~~D---------~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s-~D 299 (485)
.+.| ...+.+ |.-||+-++.+-| .++.+.++++-.+...|.. .+.|.+|.|+ +++..+++. | .=
T Consensus 217 kadkv-qm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~-~s~~EF~VvyGfMP 293 (566)
T KOG2315|consen 217 KADKV-QMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWS-PSGREFAVVYGFMP 293 (566)
T ss_pred cccee-EEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEEC-CCCCEEEEEEeccc
Confidence 1222 234443 2222222222222 5899999985567777763 4789999997 556555553 4 78
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEEC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafS 374 (485)
-.+-|+|++ +..+..+. .+.=+++-|+|.|++++-++ -|.|.+||+. -+++.+++.-. ..-..|+
T Consensus 294 Akvtifnlr-~~~v~df~--egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~-------tt~~eW~ 363 (566)
T KOG2315|consen 294 AKVTIFNLR-GKPVFDFP--EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN-------TTVFEWS 363 (566)
T ss_pred ceEEEEcCC-CCEeEeCC--CCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC-------ceEEEEc
Confidence 899999999 55555552 23457788999999988776 5799999994 88999987532 4568899
Q ss_pred CCCCEEEEEecCC-CCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 375 SDQDLIISYCKAD-SDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 375 pDG~~LaS~s~d~-~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
|||++++++..+| =+- |+.||||+. ||..+.
T Consensus 364 PdGe~flTATTaPRlrv------dNg~Kiwhy-tG~~l~ 395 (566)
T KOG2315|consen 364 PDGEYFLTATTAPRLRV------DNGIKIWHY-TGSLLH 395 (566)
T ss_pred CCCcEEEEEeccccEEe------cCCeEEEEe-cCceee
Confidence 9999999998744 121 588999996 588765
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=105.18 Aligned_cols=278 Identities=12% Similarity=0.125 Sum_probs=171.4
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecc-cCcEEEEeecCCcccEEEEEEeeCC---CEEEEEEeecCCCCcccceeEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNN---DSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~-tG~~l~tl~g~~~~~i~sv~~spdg---~~Las~S~d~~~d~stL~~~t~ 170 (485)
++-++.+. |+-||.++.-|..-+ |+. .+.+-+-|..-....|-.+-+||.- ..+++.| . +..
T Consensus 26 ~~~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-----~------qka 93 (1081)
T KOG0309|consen 26 GFNAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-----N------QKA 93 (1081)
T ss_pred cccceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-----c------chh
Confidence 34444444 666666666555433 222 2444333322222335556666652 2233333 1 455
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEc-CCce
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKIS-PGIM 246 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~--~~~V~~VafS-pg~~ 246 (485)
-+|++..-. +.++.+.-+++...+..+.|.+.+-.+||+++.|-.+-.||+.+-. .+|+.. ...-..|+++ .+.-
T Consensus 94 iiwnlA~ss-~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~ 172 (1081)
T KOG0309|consen 94 IIWNLAKSS-SNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPN 172 (1081)
T ss_pred hhhhhhcCC-ccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcc
Confidence 578873322 2334444444555556678887778899999999999999998765 667665 3456679999 3333
Q ss_pred EEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eeEEecccCCCce
Q 011452 247 LLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF--ELTEVSRTEFMTP 323 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--~~~~~l~gh~~~v 323 (485)
.++++.+ +-|.+||+.- +.+|.++++|...+..++|...--..+++.+.|+|||.||-... +...+.. -...+
T Consensus 173 vlasshg---~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-t~~pi 248 (1081)
T KOG0309|consen 173 VLASSHG---NDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-TNFPI 248 (1081)
T ss_pred hhhhccC---CceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-ccCcc
Confidence 3444222 6799999875 46899999988888899987554567788899999999998754 3333332 23355
Q ss_pred EEEEEcCCCc-----------EEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECC----CC------CE
Q 011452 324 SAFIFLYENQ-----------LFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITS----DQ------DL 379 (485)
Q Consensus 324 ~avaFspdg~-----------llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSp----DG------~~ 379 (485)
+--.|.|-|+ .+.--. +..-+.||+ + -+.+++|.||.+. |...-+-. || =.
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-----V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-----VLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchH-----HHHHhhhhcccccCCCCcccee
Confidence 6555666433 222222 455667887 4 5689999999964 22222211 11 14
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|++-|+ |.++|||-|.+
T Consensus 324 LVTWSk-----------D~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSK-----------DQTLRLWPIDS 340 (1081)
T ss_pred EEEeec-----------CCceEeeeccH
Confidence 788887 79999998853
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.3e-06 Score=89.34 Aligned_cols=262 Identities=10% Similarity=0.025 Sum_probs=159.6
Q ss_pred CCCeEEe-eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecc
Q 011452 113 QSGVCAA-FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (485)
Q Consensus 113 ~dgtikl-W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~ 191 (485)
.+..+.+ |+.+ .....+.....+..+..+.|||.|.+|++.- -..|.+|+-+.+. .|... .
T Consensus 9 ~s~~i~~f~~~~-s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----------~~~V~~~~g~~~~-----~l~~~-~ 70 (561)
T COG5354 9 YSAVISVFWNSQ-SEVIHTRFESENWPVAYVSESPLGTYLFSEH-----------AAGVECWGGPSKA-----KLVRF-R 70 (561)
T ss_pred ccceEEEeecCc-cccccccccccCcchhheeecCcchheehhh-----------ccceEEccccchh-----heeee-e
Confidence 3444444 5544 5556666666788999999999999997722 1567777743332 12222 1
Q ss_pred ccCceEEEEeCCCCeEEEEeeC---------------CCcEEEeecCCCeEEEEEcC--Cc--EE-EEEEcCCceEEEEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQ---------------DSIYKVFDLKNYTMLYSISD--KN--VQ-EIKISPGIMLLIFT 251 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~---------------D~tiKlWdl~~g~~l~tl~~--~~--V~-~VafSpg~~ll~ss 251 (485)
...+..+.|+ |+|++|++=+. +..+.|||.++|..+.++.. .. .| -+.||-+..+++--
T Consensus 71 ~~~V~~~~fS-P~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv 149 (561)
T COG5354 71 HPDVKYLDFS-PNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV 149 (561)
T ss_pred cCCceecccC-cccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh
Confidence 2345689998 89999998764 33599999999999999863 22 55 68899444443332
Q ss_pred cCCCCeeEEEEecCCCeEE----EEeecCCcceeEEEEEecCC-CEEEE-----EeCCCcEEEEECCCCeeEEecccCCC
Q 011452 252 KASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFIEQFN-EKLLV-----KQENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L----~tl~~~~~~~~~V~f~~~~~-~~lls-----~s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
.. ..++|.++ |+..- +.++ ..++..-.|++-.+ ..|+. ++.+.+++||.+-.+..+.+-. ..
T Consensus 150 v~---~sl~i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~--lf 221 (561)
T COG5354 150 VG---SSLYIHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN--LF 221 (561)
T ss_pred cc---CeEEEEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee--eE
Confidence 22 47888887 44432 2222 12344445543312 22332 3588999999988655443311 11
Q ss_pred ceE--EEEEcCCCcEEEEEe------------CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 322 TPS--AFIFLYENQLFLTFR------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 322 ~v~--avaFspdg~llaS~s------------D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.+. .+-+.+.|+.|+.-- ..++.|.++++.-+....+-.+. |-+.+|.|+++..+..+
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~p-----Vhdf~W~p~S~~F~vi~--- 293 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDP-----VHDFTWEPLSSRFAVIS--- 293 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceecccccc-----ceeeeecccCCceeEEe---
Confidence 222 244577777665211 24566777764433333233334 89999999998877765
Q ss_pred CCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 388 SDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+.++.++.+.|+. |+...-+..
T Consensus 294 ------g~~pa~~s~~~lr-~Nl~~~~Pe 315 (561)
T COG5354 294 ------GYMPASVSVFDLR-GNLRFYFPE 315 (561)
T ss_pred ------cccccceeecccc-cceEEecCC
Confidence 2347899999987 666555543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=9.2e-08 Score=112.73 Aligned_cols=210 Identities=18% Similarity=0.200 Sum_probs=158.2
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec-CCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-~~~~~ 280 (485)
+.++..+.+..+.+.--|.-+.+..+..-+-++|..+.=+| ...++++ +.|+.|++|-...|+.+.++.. -..++
T Consensus 2178 ~~s~~~~~~n~~~~~~tq~~~~~~~~~k~~v~~v~r~~sHp~~~~Yltg---s~dgsv~~~~w~~~~~v~~~rt~g~s~v 2254 (2439)
T KOG1064|consen 2178 SFSNRFTPSNLPWLGSTQTSRGASVMIKHPVENVRRMTSHPSDPYYLTG---SQDGSVRMFEWGHGQQVVCFRTAGNSRV 2254 (2439)
T ss_pred cccccCCcccCCccccceecccceeEeecccCceeeecCCCCCceEEec---CCCceEEEEeccCCCeEEEeeccCcchh
Confidence 45666777777877777776544433332346777777777 5555544 4568999999999999888862 22667
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcEEEEeC--CCc--E
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWNF--RGE--L 352 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TIklWd~--~G~--l 352 (485)
....|+.+ |.+..++-.||-+-+|.+. .+....-+-|......|.|.- .++++++ ++.+-+||. .+. +
T Consensus 2255 tr~~f~~q-Gnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~ 2330 (2439)
T KOG1064|consen 2255 TRSRFNHQ-GNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL 2330 (2439)
T ss_pred hhhhhccc-CCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce
Confidence 78999754 7899999999999999988 444445566888899999976 6677763 779999997 333 5
Q ss_pred EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCC
Q 011452 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 353 l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
+. +.|... +.-+++-|..|+|+||++ +|-|+|||+...|+.++++.
T Consensus 2331 v~--~~H~~g-----aT~l~~~P~~qllisggr-----------~G~v~l~D~rqrql~h~~~~---------------- 2376 (2439)
T KOG1064|consen 2331 VH--TCHDGG-----ATVLAYAPKHQLLISGGR-----------KGEVCLFDIRQRQLRHTFQA---------------- 2376 (2439)
T ss_pred ee--eecCCC-----ceEEEEcCcceEEEecCC-----------cCcEEEeehHHHHHHHHhhh----------------
Confidence 66 667654 889999999999999987 79999999987777665543
Q ss_pred CCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+ ...++++|+..|.+|||+.
T Consensus 2377 -------------------------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2377 -------------------------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred -------------------------------hh-hhheeeccCcccceEEEEc
Confidence 12 3578899999999999974
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=86.40 Aligned_cols=241 Identities=10% Similarity=0.106 Sum_probs=152.8
Q ss_pred ccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeee-cccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFC-RETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~-~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.-|+.|..-.+..+..|. .+.+++++.|.|+|+|- ++.||.-..+..+....++++.|+++-..|.
T Consensus 18 ~~~eG~~d~vn~~~l~~~-------------e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~ 84 (404)
T KOG1409|consen 18 SKIEGSQDDVNAAILIPK-------------EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLY 84 (404)
T ss_pred hhhcCchhhhhhheeccC-------------CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEE
Confidence 345666666666666666 78899999999999995 7778877766555566899999999887776
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEeeCCCcEEEee-cCCCeEE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD-LKNYTML 228 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWd-l~~g~~l 228 (485)
.+= ++ .++.=..+ .-.++. .+|-. .+...+..+-|+.+ -+.+.|.+.|..+ .|- .+.|..+
T Consensus 85 vg~----~n------gtvtefs~-sedfnk--m~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~-~~hc~e~~~~l 149 (404)
T KOG1409|consen 85 VGQ----DN------GTVTEFAL-SEDFNK--MTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQF-AWHCTESGNRL 149 (404)
T ss_pred EEE----ec------ceEEEEEh-hhhhhh--cchhhhhhhhhcceeeEEecCC-ceeEEEeccccce-EEEeeccCCcc
Confidence 522 23 12211111 111110 01111 13333445678754 5667788888766 453 2334332
Q ss_pred --EEEc--C-C--cEEEEEEcCCceEEEEEcCCCCeeEEEEe--cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC
Q 011452 229 --YSIS--D-K--NVQEIKISPGIMLLIFTKASGHVPLKILS--IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN 299 (485)
Q Consensus 229 --~tl~--~-~--~V~~VafSpg~~ll~sss~~~D~tIklWd--i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D 299 (485)
|.+. . . -.-..+|-. +..+.|.+.. .+.=.++.++++|.+.+....+- +-+..|.++..|
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvG----------d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-~~~~~LfSg~~d 218 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVG----------DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-PGQRLLFSGASD 218 (404)
T ss_pred cceEeeccCCCCceeeEEEEec----------ccccceEEEEEeecCCceEEEEcCcccceEEEEEc-CCCcEEEecccc
Confidence 2221 0 1 111133331 1112332222 23445678899999999999996 445666677899
Q ss_pred CcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEE
Q 011452 300 ENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 353 (485)
Q Consensus 300 ~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll 353 (485)
..+-+||+--++ ....+.+|.+.|.++...+--+.|.|+. |+-|.+||.+-+.+
T Consensus 219 ~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 219 HSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred CceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 999999987543 3445679999999998888888888888 99999999865443
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.5e-07 Score=90.23 Aligned_cols=249 Identities=12% Similarity=0.058 Sum_probs=168.0
Q ss_pred cccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCc---EEEEeecCCcccEEEEEEeeCCCEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ---RICFLNVTADEVIRSLFYNKNNDSL 151 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~---~l~tl~g~~~~~i~sv~~spdg~~L 151 (485)
+|...-.|++|.++++. ++.||.+-+..-|-++....++ ..+||+. |+..|..|.++|..+.|
T Consensus 5 ~~~~~~~pitchAwn~d-------------rt~iAv~~~~~evhiy~~~~~~~w~~~htls~-Hd~~vtgvdWap~snrI 70 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSD-------------RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSE-HDKIVTGVDWAPKSNRI 70 (361)
T ss_pred EeeeccCceeeeeecCC-------------CceEEeccCCceEEEEEecCCCCceeceehhh-hCcceeEEeecCCCCce
Confidence 34444556666666666 8889999999999999877544 6888987 99999999999999999
Q ss_pred EEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-- 228 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-- 228 (485)
+++|. | |...+|.. ..|+...+..|... -....+|.++ |++..+|.||.-+.|-||-++..+-=
T Consensus 71 vtcs~----d------rnayVw~~~~~~~WkptlvLlRi--NrAAt~V~Ws-P~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 71 VTCSH----D------RNAYVWTQPSGGTWKPTLVLLRI--NRAATCVKWS-PKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred eEccC----C------CCccccccCCCCeeccceeEEEe--ccceeeEeec-CcCceEEeccCccEEEEEEEecccceeh
Confidence 99885 3 57778887 44544333333433 2344589998 78889999999999999987643321
Q ss_pred -EEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 229 -YSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 229 -~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
+-+ ....|.++.++|++.|++.++.| ...|+++. .|+.|+=- | +-.-++..+.
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D--~k~rVfSa--------------yIK~Vdek-p-----ap~pWgsk~P- 194 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTD--GKCRVFSA--------------YIKGVDEK-P-----APTPWGSKMP- 194 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccC--cceeEEEE--------------eeeccccC-C-----CCCCCccCCc-
Confidence 111 13478999999988888876654 56666653 22222210 0 0000111111
Q ss_pred EECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc--EEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 305 LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE--LVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~--ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
=|+++.......+++..|.|+|.|..|+=.+ |.+|.+=|..|. .+.++.--+++ ..++.|-.+.+.++
T Consensus 195 ----FG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP-----~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 195 ----FGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLP-----LLSVSWISENSVVA 265 (361)
T ss_pred ----HHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCC-----ceeeEeecCCceee
Confidence 1444444445567999999999999999999 999999998743 46655544444 46666655555444
Q ss_pred E
Q 011452 382 S 382 (485)
Q Consensus 382 S 382 (485)
.
T Consensus 266 a 266 (361)
T KOG1523|consen 266 A 266 (361)
T ss_pred c
Confidence 3
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-07 Score=96.65 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=108.4
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-----eeEEecccCCCceEEEEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-----ELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-----~~~~~l~gh~~~v~avaF 328 (485)
..+..|-|-|++||- -+.|. ...-|.+..|. ..+..+..|..+|.|-..|++.+ .+.+.+ -|...|.++-.
T Consensus 231 G~sqqv~L~nvetg~-~qsf~-sksDVfAlQf~-~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~ 306 (425)
T KOG2695|consen 231 GLSQQVLLTNVETGH-QQSFQ-SKSDVFALQFA-GSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQI 306 (425)
T ss_pred cccceeEEEEeeccc-ccccc-cchhHHHHHhc-ccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhh
Confidence 344678888888873 34444 23456777775 33445555779999999999965 455555 47778888877
Q ss_pred cC-CCcEEEEEe-CCcEEEEeCC-CcE---EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 329 LY-ENQLFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 329 sp-dg~llaS~s-D~TIklWd~~-G~l---l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+. ++|.|.+++ +|+|+|||.+ -++ |++.+||.+.+-- .-+-+.+..-.|+|+++ |..-||
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~---l~~~v~~eeg~I~s~Gd-----------DcytRi 372 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY---LPAHVKEEEGSIFSVGD-----------DCYTRI 372 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccc---cccccccccceEEEccC-----------eeEEEE
Confidence 77 888888888 9999999997 667 9999999654211 12344566678888775 799999
Q ss_pred EeCCCCeEEEEecCCC
Q 011452 403 SNILTGKCLAKIRASN 418 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~ 418 (485)
|.+..|.++.+++-..
T Consensus 373 Wsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFPY 388 (425)
T ss_pred EecccCceeeccCCCC
Confidence 9999999999997644
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.63 E-value=0.00019 Score=69.85 Aligned_cols=199 Identities=15% Similarity=0.121 Sum_probs=128.6
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEc-----CCcEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~-----~~~V~~Va 240 (485)
..+.-++...++. ..+.. ..+..++|+.++|.++++.. + .+.+.|+++++. +.... ....++++
T Consensus 22 ~~i~~~~~~~~~~----~~~~~---~~~~G~~~~~~~g~l~v~~~-~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~ 92 (246)
T PF08450_consen 22 GRIYRVDPDTGEV----EVIDL---PGPNGMAFDRPDGRLYVADS-G-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVA 92 (246)
T ss_dssp TEEEEEETTTTEE----EEEES---SSEEEEEEECTTSEEEEEET-T-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEec---CCCceEEEEccCCEEEEEEc-C-ceEEEecCCCcEEEEeeccCCCcccCCCceEE
Confidence 3555566544443 12332 22667888756788777553 4 445559999874 34442 23688999
Q ss_pred EcCCceEEEEEcCCCC------eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECC--CCe
Q 011452 241 ISPGIMLLIFTKASGH------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR--NFE 311 (485)
Q Consensus 241 fSpg~~ll~sss~~~D------~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~--tg~ 311 (485)
+.|+|.+.++.+.... +.|-.++.. |+....+.+ ...-..++|+ +++..|.+. +..+.|.-+|+. +++
T Consensus 93 vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~~~pNGi~~s-~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 93 VDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-LGFPNGIAFS-PDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp E-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-ESSEEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred EcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-cccccceEEC-CcchheeecccccceeEEEeccccccc
Confidence 9997777766543221 346666665 565544443 4566799997 677778765 688889999985 331
Q ss_pred e-----EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEEEE
Q 011452 312 L-----TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISY 383 (485)
Q Consensus 312 ~-----~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~LaS~ 383 (485)
. ...+.+....+-.+++..+|++.++.. .+.|.++|.+|+++..++--... +.+++| -||.+.|.-.
T Consensus 170 ~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~~-----~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 170 LSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVPR-----PTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp EEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSSS-----EEEEEEESTTSSEEEEE
T ss_pred eeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCCC-----EEEEEEECCCCCEEEEE
Confidence 1 222233334588999999999999887 99999999999999887754323 889999 5776666543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-05 Score=85.58 Aligned_cols=271 Identities=14% Similarity=0.135 Sum_probs=172.9
Q ss_pred ccccccccccceEEEEEe-cCEEEEEeCCCeEEeeecc-cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 87 MVLPFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 87 ~~~~~~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~-tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
.|.+|+--..-|.+=++- +.+-+-..++|.-.|+..+ .|+-|+-....++ -+.=-.|.||+.|+..- .
T Consensus 217 tFeK~vdl~~~vS~PmIV~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq~----~---- 286 (668)
T COG4946 217 TFEKFVDLDGNVSSPMIVGERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQN----A---- 286 (668)
T ss_pred ceeeeeecCCCcCCceEEcceEEEEecccCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEec----C----
Confidence 334443333333333333 3444555667776666533 1554442222122 12233477888886522 1
Q ss_pred cceeEEEEeEeccCCc---Ccccceeee-c---cccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcE
Q 011452 165 LRCRSTRIEYIRRGKP---DAGFALFES-E---SLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNV 236 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~---~~~~~lf~~-~---~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V 236 (485)
+.|-+.|..+-++ +-+.+++.. + ......+++ |+..+|.++|..| -|..-|.+.-.+--+..-+...|
T Consensus 287 ---GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~iqv~~~~~V 362 (668)
T COG4946 287 ---GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSIQVGKKGGV 362 (668)
T ss_pred ---CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeEEcCCCCce
Confidence 3566666544433 233344522 1 111112455 8888999999988 45666666555544555555678
Q ss_pred EEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 237 QEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 237 ~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
.-..|+ .+...+++.. ++ -.|-|+|.++|+. +.+....+.+.+|..+ ++|.+++++.....|-+.|+.||+....
T Consensus 363 rY~r~~~~~e~~vigt~-dg-D~l~iyd~~~~e~-kr~e~~lg~I~av~vs-~dGK~~vvaNdr~el~vididngnv~~i 438 (668)
T COG4946 363 RYRRIQVDPEGDVIGTN-DG-DKLGIYDKDGGEV-KRIEKDLGNIEAVKVS-PDGKKVVVANDRFELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEEccCCcceEEecc-CC-ceEEEEecCCceE-EEeeCCccceEEEEEc-CCCcEEEEEcCceEEEEEEecCCCeeEe
Confidence 888888 3334555422 22 2899999987754 5666667899999975 7788888888888999999999998888
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-C----CcEEEEeCCC-cE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWNFRG-EL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D----~TIklWd~~G-~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
-+...+-|..++++|+++.+|-+- + +.|||+|+.| +. ++|-.+| -.+=||.|||++|-==
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~--------DfsPaFD~d~ryLYfL 506 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY--------DFSPAFDPDGRYLYFL 506 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc--------ccCcccCCCCcEEEEE
Confidence 788888999999999999999775 4 5899999985 54 3343344 3467899999887533
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=67.12 Aligned_cols=39 Identities=26% Similarity=0.389 Sum_probs=36.9
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
|+++++|++|... |++|+|+|++.+|||+|. |++|+|||
T Consensus 1 g~~~~~~~~h~~~-----i~~i~~~~~~~~~~s~~~-----------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSS-----INSIAWSPDGNFLASGSS-----------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSS-----EEEEEEETTSSEEEEEET-----------TSEEEEEE
T ss_pred CeEEEEEcCCCCc-----EEEEEEecccccceeeCC-----------CCEEEEEC
Confidence 6899999999988 999999999999999997 79999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-07 Score=93.11 Aligned_cols=156 Identities=16% Similarity=0.224 Sum_probs=107.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCC----eEEEEEc--C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g----~~l~tl~--~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
.+.++ +.|++||.+-.++..-++++..- +++.... . ..+..+..+ -..++....+++..+.+|++..|.
T Consensus 67 ~~~~s-~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~--~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 67 LVLTS-DSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIRED--TSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccC-CCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeecc--ceEEEEeecCCceeeeeecccccC
Confidence 45564 67888877766666556665421 1222222 1 234444443 334445555667899999988766
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
++-.+ ||..-+..|+++ ||++.++++-.|+.|||-....-.-++. .-||...|+.++.- ++++|+|++ |+||++|
T Consensus 144 ~~~~l-GhvSml~dVavS-~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~W 220 (390)
T KOG3914|consen 144 CEPIL-GHVSMLLDVAVS-PDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLW 220 (390)
T ss_pred cchhh-hhhhhhheeeec-CCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEE
Confidence 65444 788888999997 7788888899999999977664444443 35899999998765 556688888 9999999
Q ss_pred eCC-CcEEEEeec
Q 011452 347 NFR-GELVTSFED 358 (485)
Q Consensus 347 d~~-G~ll~tl~g 358 (485)
|.. |+++.+++-
T Consensus 221 d~~sgk~L~t~dl 233 (390)
T KOG3914|consen 221 DITSGKLLDTCDL 233 (390)
T ss_pred ecccCCcccccch
Confidence 996 999987753
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.5e-05 Score=76.86 Aligned_cols=224 Identities=15% Similarity=0.171 Sum_probs=132.7
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCC-Ce-EEEE--Ec-C-C-cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-YT-MLYS--IS-D-K-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~-~l~t--l~-~-~-~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++-+ .||++||.- +|..|-+=..++ +. ++.. ++ + + .-+-++||||+++|+.+... ++|++.|+. |..|
T Consensus 3 ~~~~-~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~--G~i~vfdl~-g~~l 77 (282)
T PF15492_consen 3 LALS-SDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAEST--GTIRVFDLM-GSEL 77 (282)
T ss_pred eeec-CCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCC--CeEEEEecc-ccee
Confidence 3444 699999864 788887776553 22 2222 22 2 1 45779999999999886544 899999995 5777
Q ss_pred EEeecC-------CcceeEEEEEecC-----CCEEEEEeCCCcEEEEECCCC-----eeEEe---cccCCCceEEEEEcC
Q 011452 271 KSFNHL-------LHRNKKVDFIEQF-----NEKLLVKQENENLQILDVRNF-----ELTEV---SRTEFMTPSAFIFLY 330 (485)
Q Consensus 271 ~tl~~~-------~~~~~~V~f~~~~-----~~~lls~s~D~tIkIWDv~tg-----~~~~~---l~gh~~~v~avaFsp 330 (485)
..++.- ...+..+.|.++. ...|++=..+|.+|=+-+..| +...+ ...+...|.++++.|
T Consensus 78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p 157 (282)
T PF15492_consen 78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP 157 (282)
T ss_pred EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence 766521 1334466786543 235667678888877765322 22222 234577999999999
Q ss_pred CCcEEEEEe--CCcEEEEeCC--CcE-EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 331 ENQLFLTFR--NRTVAVWNFR--GEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 331 dg~llaS~s--D~TIklWd~~--G~l-l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.-++|+-++ ...-..+... |-. -+.|.+ +|..+.+.++. |+.... ..+-.+|.+
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------------~Pyyk~v~~~~-----~~~~~~-~~~~~~~~~ 216 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------------SPYYKQVTSSE-----DDITAS-SKRRGLLRI 216 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCC---------------CCcEEEccccC-----cccccc-ccccceeec
Confidence 999988776 3322222221 211 111221 23333322211 111000 123345655
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+.-- .++.. . ..|..+..||||+.||+-..+|.|-||++
T Consensus 217 ~~~~~fs-~~~~~--------------------------~-----------d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 217 PSFKFFS-RQGQE--------------------------Q-----------DGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred cceeeee-ccccC--------------------------C-----------CceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 5433211 11211 0 28999999999999999999999999984
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00021 Score=73.87 Aligned_cols=263 Identities=11% Similarity=0.155 Sum_probs=163.9
Q ss_pred eEEEEeEe--ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC---CCcEEEeecC--CCeEEE----EEcCCcE
Q 011452 168 RSTRIEYI--RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ---DSIYKVFDLK--NYTMLY----SISDKNV 236 (485)
Q Consensus 168 ~t~~lw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~---D~tiKlWdl~--~g~~l~----tl~~~~V 236 (485)
+.|..|++ .+|++..-+ +. +....|-.++|+ |+++.|-++.. ++.|--+.++ +|++-+ .+.++.=
T Consensus 16 ~gI~v~~ld~~~g~l~~~~-~v--~~~~nptyl~~~-~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p 91 (346)
T COG2706 16 QGIYVFNLDTKTGELSLLQ-LV--AELGNPTYLAVN-PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP 91 (346)
T ss_pred CceEEEEEeCcccccchhh-hc--cccCCCceEEEC-CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC
Confidence 56777877 466663211 12 234567789997 79988777643 5677766665 377532 2234555
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeEEE---EeecCCcc----------eeEEEEEecCCCEEEEEe--CCC
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLK---SFNHLLHR----------NKKVDFIEQFNEKLLVKQ--ENE 300 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~L~---tl~~~~~~----------~~~V~f~~~~~~~lls~s--~D~ 300 (485)
.-|++++++.++.++.-.. +.|.+.-+.+ |.+.. .+. |++. +-.+.|. |++.+|++.. .|
T Consensus 92 ~yvsvd~~g~~vf~AnY~~-g~v~v~p~~~dG~l~~~v~~~~-h~g~~p~~rQ~~~h~H~a~~t-P~~~~l~v~DLG~D- 167 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHS-GSVSVYPLQADGSLQPVVQVVK-HTGSGPHERQESPHVHSANFT-PDGRYLVVPDLGTD- 167 (346)
T ss_pred eEEEECCCCCEEEEEEccC-ceEEEEEcccCCccccceeeee-cCCCCCCccccCCccceeeeC-CCCCEEEEeecCCc-
Confidence 7899998776655544333 7888888844 65533 222 2222 4456664 7787888864 55
Q ss_pred cEEEEECCCCeeEEecc---cCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCCC--cEEEEeecCCC----CCCCCCee
Q 011452 301 NLQILDVRNFELTEVSR---TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRG--ELVTSFEDHLL----WHPDCNTN 369 (485)
Q Consensus 301 tIkIWDv~tg~~~~~l~---gh~~~v~avaFspdg~llaS~s--D~TIklWd~~G--~ll~tl~gH~~----~~~~~~v~ 369 (485)
-|.++++..|.+...-. .....++=++|.|++++.-.-. ++||-+|..++ ..+..++-|.. .+......
T Consensus 168 ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~a 247 (346)
T COG2706 168 RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAA 247 (346)
T ss_pred eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCcee
Confidence 57899999887643321 3345788899999999877776 99999999853 22222222211 11111267
Q ss_pred EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 370 NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 370 svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
.|.+||||++|-.+-. + ..+|-++.+.. |..|..+.-.. .|..
T Consensus 248 aIhis~dGrFLYasNR---------g-~dsI~~f~V~~~~g~L~~~~~~~-----teg~--------------------- 291 (346)
T COG2706 248 AIHISPDGRFLYASNR---------G-HDSIAVFSVDPDGGKLELVGITP-----TEGQ--------------------- 291 (346)
T ss_pred EEEECCCCCEEEEecC---------C-CCeEEEEEEcCCCCEEEEEEEec-----cCCc---------------------
Confidence 8999999999998654 1 34777777643 23344333221 0111
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEEecCCC-cEEEc
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYTGNRHG-LVHVW 483 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg-tVklW 483 (485)
.=+...|+|+|+.|+.+++|. +|.|.
T Consensus 292 ---------~PR~F~i~~~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 292 ---------FPRDFNINPSGRFLIAANQKSDNITVF 318 (346)
T ss_pred ---------CCccceeCCCCCEEEEEccCCCcEEEE
Confidence 235689999999999998654 45554
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.4e-05 Score=76.95 Aligned_cols=188 Identities=13% Similarity=0.108 Sum_probs=108.1
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCC--------ceEEEEEcCCCCeeE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPG--------IMLLIFTKASGHVPL 259 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg--------~~ll~sss~~~D~tI 259 (485)
-|+|| ||+.+||++..-|+|+|+|+- |..++.++. ..|..+.|-+- ..|++. .++.+
T Consensus 48 kl~WS-pD~tlLa~a~S~G~i~vfdl~-g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~----Y~G~L 121 (282)
T PF15492_consen 48 KLAWS-PDCTLLAYAESTGTIRVFDLM-GSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN----YRGQL 121 (282)
T ss_pred EEEEC-CCCcEEEEEcCCCeEEEEecc-cceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe----cccee
Confidence 58998 899999999999999999985 577777752 35777777631 223332 11233
Q ss_pred EEE--ec---CCCeEEEEeec---CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEE--
Q 011452 260 KIL--SI---EDGTVLKSFNH---LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIF-- 328 (485)
Q Consensus 260 klW--di---~tG~~L~tl~~---~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-- 328 (485)
+=. ++ +..+...+|.. +.+.+..+.+.+ .-..|+++| +...-..+... .-.+.+...
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~LLlVgG~~~~~~~~s~a~-----------~~GLtaWRiL~ 189 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRLLLVGGCEQNQDGMSKAS-----------SCGLTAWRILS 189 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCEEEEeccCCCCCcccccc-----------ccCceEEEEcC
Confidence 322 22 23445566653 345778888874 335666665 43321111100 111122211
Q ss_pred -cCCCcEEEEEeCCc------EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 329 -LYENQLFLTFRNRT------VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 329 -spdg~llaS~sD~T------IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
+|.-+.+.++.|+. -.+|.+- .+..-....-... |..+.+||||++||+... +|+|
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~-----i~kmSlSPdg~~La~ih~-----------sG~l 253 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG-----IFKMSLSPDGSLLACIHF-----------SGSL 253 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCc-----eEEEEECCCCCEEEEEEc-----------CCeE
Confidence 34444333222322 1244432 2211111111222 899999999999999987 6999
Q ss_pred EEEeCCCCeEEEEecCCC
Q 011452 401 NISNILTGKCLAKIRASN 418 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~ 418 (485)
-||++-+=++.++..-++
T Consensus 254 sLW~iPsL~~~~~W~~~e 271 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWKQDE 271 (282)
T ss_pred EEEecCcchhhcccchhh
Confidence 999999877777776554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00038 Score=72.03 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=170.4
Q ss_pred CCeEEeeeccc--CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe--ccCCcCcccceeee
Q 011452 114 SGVCAAFCRET--NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI--RRGKPDAGFALFES 189 (485)
Q Consensus 114 dgtiklW~~~t--G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~~~~~~lf~~ 189 (485)
++-|..|++.+ |+.-........+...=|+++|+++.|-++-..+... .+--..| .+|++. +...
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~g-------gvaay~iD~~~G~Lt----~ln~ 83 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEG-------GVAAYRIDPDDGRLT----FLNR 83 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcC-------cEEEEEEcCCCCeEE----Eeec
Confidence 57788888773 4432222222445678899999999998877654322 3333344 347762 1111
Q ss_pred --ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCC-CeEEEE---E-cCC----------cEEEEEEcCCceEEEEE
Q 011452 190 --ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKN-YTMLYS---I-SDK----------NVQEIKISPGIMLLIFT 251 (485)
Q Consensus 190 --~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~-g~~l~t---l-~~~----------~V~~VafSpg~~ll~ss 251 (485)
.....+-.|++| ++|++|.++. .-+.|.|.-++. |.+... + +.. .+....|.|++.++...
T Consensus 84 ~~~~g~~p~yvsvd-~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~ 162 (346)
T COG2706 84 QTLPGSPPCYVSVD-EDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP 162 (346)
T ss_pred cccCCCCCeEEEEC-CCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe
Confidence 122344689998 7999998886 358899998854 665322 2 211 27889999988666654
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecC---CcceeEEEEEecCCCEEEE--EeCCCcEEEEECCC--Ce--eEEec---c--
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHL---LHRNKKVDFIEQFNEKLLV--KQENENLQILDVRN--FE--LTEVS---R-- 317 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~---~~~~~~V~f~~~~~~~lls--~s~D~tIkIWDv~t--g~--~~~~l---~-- 317 (485)
.-..| .|.++++++|++-..-... ...-+-|+|. | +++++- .--+.||-+|.... |+ +++++ .
T Consensus 163 DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH-p-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d 239 (346)
T COG2706 163 DLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH-P-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED 239 (346)
T ss_pred ecCCc-eEEEEEcccCccccccccccCCCCCcceEEEc-C-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc
Confidence 44343 6889999998875432211 1223468897 4 445443 45899999999887 43 33332 1
Q ss_pred -cCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 318 -TEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 318 -gh~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
.-..+..++..+|||+.|-.+. ...|-++.+. |..+..++ +..-+-.+ =+...|+|+|++|+.+..+
T Consensus 240 F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~-~~~teg~~-PR~F~i~~~g~~Liaa~q~------ 311 (346)
T COG2706 240 FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVG-ITPTEGQF-PRDFNINPSGRFLIAANQK------ 311 (346)
T ss_pred cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEE-EeccCCcC-CccceeCCCCCEEEEEccC------
Confidence 1234677888999999887775 5588888873 44443332 22111112 2688999999999998863
Q ss_pred CcCCCCeEEEEeC--CCCeEE
Q 011452 393 AEGNAGSINISNI--LTGKCL 411 (485)
Q Consensus 393 ~~~~DgtIklWdl--~TGk~l 411 (485)
..+|.++.+ .||++-
T Consensus 312 ----sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 312 ----SDNITVFERDKETGRLT 328 (346)
T ss_pred ----CCcEEEEEEcCCCceEE
Confidence 456888865 566653
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-07 Score=98.93 Aligned_cols=168 Identities=12% Similarity=0.211 Sum_probs=122.6
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-------CeeEEecccCCCceEEEEEcCCCcEEEEEeCC
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-------FELTEVSRTEFMTPSAFIFLYENQLFLTFRNR 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-------g~~~~~l~gh~~~v~avaFspdg~llaS~sD~ 341 (485)
.|..|.||+..++.++-+. ....+++++.|+|||+|.++. ..|.-+...|...|..+-|..|.+.++|+ |+
T Consensus 727 rL~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc-D~ 804 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC-DG 804 (1034)
T ss_pred eeecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec-cC
Confidence 4667889999998888652 234567789999999999873 35888889999999999999999988653 89
Q ss_pred cEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECC--CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 342 TVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITS--DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 342 TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSp--DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
-|.+||. .|.++..+++..-. .. +..|.--| |..+++.+|.. ..|||+.|...++-...++-.+
T Consensus 805 giHlWDPFigr~Laq~~dapk~-~a--~~~ikcl~nv~~~iliAgcsa----------eSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKE-GA--GGNIKCLENVDRHILIAGCSA----------ESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred cceeecccccchhHhhhcCccc-CC--CceeEecccCcchheeeeccc----------hhhheeeecccccceeeEEecc
Confidence 9999997 59887755543211 11 22232223 56667766642 5899999999888777666543
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|+.+. .-+++++..|.|+.||.|=..|+|-+-|
T Consensus 872 -------a~~Pn--------------------------a~~R~iaVa~~GN~lAa~LSnGci~~LD 904 (1034)
T KOG4190|consen 872 -------APGPN--------------------------ALTRAIAVADKGNKLAAALSNGCIAILD 904 (1034)
T ss_pred -------CCCCc--------------------------hheeEEEeccCcchhhHHhcCCcEEEEe
Confidence 11111 2788999999999999998888876544
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.6e-06 Score=82.00 Aligned_cols=132 Identities=10% Similarity=0.033 Sum_probs=97.4
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE--EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeE
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFELT 313 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~~ 313 (485)
.++.|++.+.-++++ +.++.+-+=+...+.+.+ +.+.|.-..|-..|+..+++.+.+||+|+.+.-||++ -++++
T Consensus 125 lslD~~~~~~~i~vs--~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVS--DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred eEEEeeccCceEEEE--cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence 357788755444432 233566655555555555 7788888889999987778888889999999999999 55666
Q ss_pred Ee-cccCCCceEEEEEc-CCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 314 EV-SRTEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 314 ~~-l~gh~~~v~avaFs-pdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.. .+-|.+.|.++--+ |....++||+ |.+|++||.+ |+.+..-. .. +.||-|.-+|-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~----GGVWRi~~~p~ 264 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK--VG----GGVWRIKHHPE 264 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc--cc----cceEEEEecch
Confidence 55 56788999988765 5788999999 9999999996 88765322 11 33899999884
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00042 Score=80.85 Aligned_cols=269 Identities=13% Similarity=0.127 Sum_probs=160.4
Q ss_pred EEEEEe--cCEEEEEeC------CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 99 IEIVAA--RDIVFALAQ------SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 99 ~~i~~s--~~~ias~s~------dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
..|..- |+++|..+- -+.+|+|+++ |++..+-.. -++.-.+++|.|.|..||++-. ..+. +.|
T Consensus 213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~-v~gLe~~l~WrPsG~lIA~~q~-~~~~------~~V 283 (928)
T PF04762_consen 213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP-VDGLEGALSWRPSGNLIASSQR-LPDR------HDV 283 (928)
T ss_pred eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc-CCCccCCccCCCCCCEEEEEEE-cCCC------cEE
Confidence 344444 899998875 3699999998 997776553 5566778999999999988765 3343 566
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc---CCcEEEEEEcC--
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS---DKNVQEIKISP-- 243 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~---~~~V~~VafSp-- 243 (485)
-++. +.|-....+.|-.......+..++|+ +|+.+||---.|. |.||-..||. +-+.+. ...+..+.|+|
T Consensus 284 vFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn-~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~ 360 (928)
T PF04762_consen 284 VFFE-RNGLRHGEFTLRFDPEEEKVIELAWN-SDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEK 360 (928)
T ss_pred EEEe-cCCcEeeeEecCCCCCCceeeEEEEC-CCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCC
Confidence 6665 56654332222211011234579998 7999999977665 9999999998 444453 23455588887
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE---ecCCCEEEEEeCCCcEEEEECCCCe-----eEEe
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI---EQFNEKLLVKQENENLQILDVRNFE-----LTEV 315 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~---~~~~~~lls~s~D~tIkIWDv~tg~-----~~~~ 315 (485)
-..|.+.... +.+...+ ..+.++.+ +|++.-+++-=+..+++|=.++... +...
T Consensus 361 p~~L~v~t~~---g~~~~~~---------------~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~ 422 (928)
T PF04762_consen 361 PLRLHVLTSN---GQYEIYD---------------FAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYE 422 (928)
T ss_pred CCEEEEEecC---CcEEEEE---------------EEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceE
Confidence 2233332211 1111111 11233332 1222222223356777877777653 1222
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--------EEEEeecC-----CCCCCCCCeeEEEECCCCCEE
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--------LVTSFEDH-----LLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--------ll~tl~gH-----~~~~~~~~v~svafSpDG~~L 380 (485)
+. -...|.+|+|++++..+|.-. |++|.+|... .. +..++..+ ....+...+..++|..+..++
T Consensus 423 l~-~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (928)
T PF04762_consen 423 LE-LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLL 501 (928)
T ss_pred Ec-CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEE
Confidence 21 235799999999998777777 9999999953 21 11122211 111112236788888888777
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+..+. ..+-..|.++++.
T Consensus 502 ~~~~~--------~~~~~~i~~~~~~ 519 (928)
T PF04762_consen 502 VLSDS--------DSNQSKIVLVDID 519 (928)
T ss_pred EEEec--------CcccceEEEEEec
Confidence 77654 1123678888774
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.6e-05 Score=76.16 Aligned_cols=220 Identities=13% Similarity=0.106 Sum_probs=141.4
Q ss_pred EEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC-ceEEEEeCCCCeEEEEe-----e
Q 011452 140 RSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW-PGFVEFDDVNGKVLTYS-----A 212 (485)
Q Consensus 140 ~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~-~~~V~Fs~pnG~~Las~-----s 212 (485)
..++.+|. +..++.+-. .+.-.-++|.++|+..+ .+....-.| -+...|| +||++|-+. +
T Consensus 8 H~~a~~p~~~~avafaRR---------PG~~~~v~D~~~g~~~~---~~~a~~gRHFyGHg~fs-~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARR---------PGTFALVFDCRTGQLLQ---RLWAPPGRHFYGHGVFS-PDGRLLYTTENDYET 74 (305)
T ss_pred cceeeCCCCCeEEEEEeC---------CCcEEEEEEcCCCceee---EEcCCCCCEEecCEEEc-CCCCEEEEeccccCC
Confidence 45778884 444443332 33567788988888732 222211111 1247898 799998765 3
Q ss_pred CCCcEEEeecC-CCeEEEEEcCCcE--EEEEEcCCc-eEEEEEcC---------------CCCeeEEEEecCCCeEEEE-
Q 011452 213 QDSIYKVFDLK-NYTMLYSISDKNV--QEIKISPGI-MLLIFTKA---------------SGHVPLKILSIEDGTVLKS- 272 (485)
Q Consensus 213 ~D~tiKlWdl~-~g~~l~tl~~~~V--~~VafSpg~-~ll~sss~---------------~~D~tIklWdi~tG~~L~t- 272 (485)
..|.|-|||+. +++.+-.+..+.| -++.+.|++ .|+++... ..+-.+-+.|..+|++|..
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~ 154 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQV 154 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeee
Confidence 46899999999 7888888876544 578889877 77776443 1123566788899999876
Q ss_pred -e--ecCCcceeEEEEEecCCCEEEEE-eCCCc-------EEEEECCCCeeEEecc-------cCCCceEEEEEcCCCcE
Q 011452 273 -F--NHLLHRNKKVDFIEQFNEKLLVK-QENEN-------LQILDVRNFELTEVSR-------TEFMTPSAFIFLYENQL 334 (485)
Q Consensus 273 -l--~~~~~~~~~V~f~~~~~~~lls~-s~D~t-------IkIWDv~tg~~~~~l~-------gh~~~v~avaFspdg~l 334 (485)
| ..|+-.+.-++.. .+ +..+.+ ++.+- |=+++- ++.++.+. .=.+.+-+|+|+++|.+
T Consensus 155 ~Lp~~~~~lSiRHLa~~-~~-G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ 230 (305)
T PF07433_consen 155 ELPPDLHQLSIRHLAVD-GD-GTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRL 230 (305)
T ss_pred ecCccccccceeeEEec-CC-CcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCE
Confidence 5 3455566667764 33 444443 43221 222222 22222221 22357899999999998
Q ss_pred EEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 335 FLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 335 laS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++.+| -+.+-+||.. |+++....=.. +-.|+-.++| +++|.+
T Consensus 231 ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-------~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 231 IAVTSPRGGRVAVWDAATGRLLGSVPLPD-------ACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEEECCCCCEEEEEECCCCCEeeccccCc-------eeeeeecCCc-eEEeCC
Confidence 88777 8899999995 99987654332 6789988888 888754
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00015 Score=75.75 Aligned_cols=226 Identities=12% Similarity=0.080 Sum_probs=136.2
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEE-EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRS-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~s-v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
++..++.|+.++.+|.+..+|.+||+.+=..+. .. .+.+ .... ++ .|+.++ .+ ..+.-.|..+|+
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-~~-~~~ssP~v~-~~-~v~v~~----~~------g~l~ald~~tG~ 181 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-AG-EALSRPVVS-DG-LVLVHT----SN------GMLQALNESDGA 181 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccC-CC-ceecCCEEE-CC-EEEEEC----CC------CEEEEEEccCCC
Confidence 455688899999999999999999998765543 22 2222 1221 33 444432 12 355666778887
Q ss_pred cCcccceeeeccccC------ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------C---cEEEEEEcC-
Q 011452 180 PDAGFALFESESLKW------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------K---NVQEIKISP- 243 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~------~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------~---~V~~VafSp- 243 (485)
. +|+...... ...-... +|.+++ ++.|+.+...|+++|+.+....- . ....+.-+|
T Consensus 182 ~-----~W~~~~~~~~~~~~~~~sP~v~--~~~v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~ 253 (394)
T PRK11138 182 V-----KWTVNLDVPSLTLRGESAPATA--FGGAIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV 253 (394)
T ss_pred E-----eeeecCCCCcccccCCCCCEEE--CCEEEE-EcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcE
Confidence 6 555421100 0011121 344443 55688888889999887655421 0 111222334
Q ss_pred --CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cC
Q 011452 244 --GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TE 319 (485)
Q Consensus 244 --g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh 319 (485)
++.+.+.+ .++.+.-.|+++|+.+.+... .....+. ..++++.+.+.|+.|..+|..+|+.+-... .+
T Consensus 254 v~~~~vy~~~---~~g~l~ald~~tG~~~W~~~~--~~~~~~~---~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~ 325 (394)
T PRK11138 254 VVGGVVYALA---YNGNLVALDLRSGQIVWKREY--GSVNDFA---VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLH 325 (394)
T ss_pred EECCEEEEEE---cCCeEEEEECCCCCEEEeecC--CCccCcE---EECCEEEEEcCCCeEEEEECCCCcEEEcccccCC
Confidence 56665543 247899999999999876542 1211222 236888888999999999999998754322 11
Q ss_pred CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeec
Q 011452 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~g 358 (485)
.. ..+.+ ..+|.+++...|+.|.+.|.. |+.+...+-
T Consensus 326 ~~-~~sp~-v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 326 RL-LTAPV-LYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred Cc-ccCCE-EECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 11 11111 136666655449999999995 999887653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.8e-05 Score=79.97 Aligned_cols=191 Identities=11% Similarity=0.091 Sum_probs=126.6
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEE-EE--c------CC-------cEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLY-SI--S------DK-------NVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~-tl--~------~~-------~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
.||+.++.. .-|-|-++|.++-++.. .+ . .. .....+.++|.+++.-+. +.+-|.+...
T Consensus 276 sDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----GkaFi~~~~~ 350 (668)
T COG4946 276 SDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----GKAFIMRPWD 350 (668)
T ss_pred CCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----CcEEEECCCC
Confidence 368888764 46788899987655311 11 1 00 112244556777766543 3566666555
Q ss_pred CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCC-cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE-NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 267 G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~-tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
|-.++.- |-+.|+=..+. -+++.++.+-.|+ .|-|+|.++++..+. .+..+.|.++..+|||+.++.+. ...|-
T Consensus 351 ~~~iqv~--~~~~VrY~r~~-~~~e~~vigt~dgD~l~iyd~~~~e~kr~-e~~lg~I~av~vs~dGK~~vvaNdr~el~ 426 (668)
T COG4946 351 GYSIQVG--KKGGVRYRRIQ-VDPEGDVIGTNDGDKLGIYDKDGGEVKRI-EKDLGNIEAVKVSPDGKKVVVANDRFELW 426 (668)
T ss_pred CeeEEcC--CCCceEEEEEc-cCCcceEEeccCCceEEEEecCCceEEEe-eCCccceEEEEEcCCCcEEEEEcCceEEE
Confidence 6666533 33567666664 4677888998777 999999999886544 45677999999999999998888 55676
Q ss_pred EEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 345 VWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+.|++ |+.. ..+... . .-+...+++|++.+||=+-. + +---+.|||.|+.+||....-
T Consensus 427 vididngnv~-~idkS~-~---~lItdf~~~~nsr~iAYafP----~---gy~tq~Iklydm~~~Kiy~vT 485 (668)
T COG4946 427 VIDIDNGNVR-LIDKSE-Y---GLITDFDWHPNSRWIAYAFP----E---GYYTQSIKLYDMDGGKIYDVT 485 (668)
T ss_pred EEEecCCCee-Eecccc-c---ceeEEEEEcCCceeEEEecC----c---ceeeeeEEEEecCCCeEEEec
Confidence 77775 6632 222111 1 22889999999999996543 0 112368999999988876543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-06 Score=87.92 Aligned_cols=264 Identities=14% Similarity=0.086 Sum_probs=175.7
Q ss_pred cccccceEEEEEe-cCEEEEEeCCCeEEeeeccc--CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 92 LRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRET--NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 92 ~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~t--G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
.+||.-|.-++.+ -+++.++|.||..|.|.... |-.+.--...|...|-+++-|-+|-+.+|++. .| +
T Consensus 6 ymhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d---~D------h 76 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVED---PD------H 76 (558)
T ss_pred hcccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccC---cc------c
Confidence 4788888888888 89999999999999998442 33332233458889999999999999988662 25 7
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC----eEEEEeeCCCcEEEeecCCCeE--EE--EEcCCcEEEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG----KVLTYSAQDSIYKVFDLKNYTM--LY--SISDKNVQEIK 240 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG----~~Las~s~D~tiKlWdl~~g~~--l~--tl~~~~V~~Va 240 (485)
.+|+.|+..=.....++ . ..-|+++++...-| .+-++...++.+-|.|-....| .+ .+|-.+|-.+.
T Consensus 77 s~KvfDvEn~DminmiK---L--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~ 151 (558)
T KOG0882|consen 77 SVKVFDVENFDMINMIK---L--VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIR 151 (558)
T ss_pred ceeEEEeeccchhhhcc---c--ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEE
Confidence 88888875544322111 1 12345555533334 5555666788999998653332 22 24567899999
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~ 320 (485)
.+|-+..++|. +..+.|.-|+.+. .++-.+ ..+. |.+.+..-+-.+..-.
T Consensus 152 y~qa~Ds~vSi--D~~gmVEyWs~e~--~~qfPr------~~l~--------------------~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 152 YNQAGDSAVSI--DISGMVEYWSAEG--PFQFPR------TNLN--------------------FELKHETDLYGFPKAK 201 (558)
T ss_pred eeccccceeec--cccceeEeecCCC--cccCcc------cccc--------------------ccccccchhhcccccc
Confidence 99855555543 3337899998742 221111 1122 2222222222222334
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee--------------------------------cCCCCCCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE--------------------------------DHLLWHPDC 366 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~--------------------------------gH~~~~~~~ 366 (485)
..+.++.|+|+|..+++.+ |.+|++.++. |++++.++ .|...
T Consensus 202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~---- 277 (558)
T KOG0882|consen 202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGST---- 277 (558)
T ss_pred cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCc----
Confidence 5678999999999999999 9999999995 87766443 22211
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.-..+.|...|++|+=++. =-||+.|+.|++|++.|-
T Consensus 278 ~~~~~~fdes~~flly~t~------------~gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 278 VGTNAVFDESGNFLLYGTI------------LGIKVINLDTNTVVRILG 314 (558)
T ss_pred ccceeEEcCCCCEEEeecc------------eeEEEEEeecCeEEEEec
Confidence 1346788899999998775 459999999999999883
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-06 Score=94.11 Aligned_cols=248 Identities=13% Similarity=0.148 Sum_probs=158.6
Q ss_pred cccCCCCcccccccccccccceEEEEEe----cCEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCC-C
Q 011452 77 DTHDPKGHCSMVLPFLRKRSKIIEIVAA----RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNN-D 149 (485)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~s~V~~i~~s----~~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg-~ 149 (485)
+-|.||.......|. .|-++..+ .++-+.....+..-+|++. +.+.|-++.-+|...|..+-|+|+. +
T Consensus 54 ~p~~ppr~l~h~tpw-----~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 54 DPFTPPRWLHHITPW-----QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred CCCCCceeeeccCcc-----hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc
Confidence 344444444444444 35555555 5555544455555688864 4666776666699999999999986 5
Q ss_pred EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc--eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-
Q 011452 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT- 226 (485)
Q Consensus 150 ~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~- 226 (485)
.||+.|+|. .+..||++.-.. +.... ...+. ..|+++-.|+.+||+ +..+-|++||+.-|.
T Consensus 129 Vlatcsvdt----------~vh~wd~rSp~~----p~ys~-~~w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 129 VLATCSVDT----------YVHAWDMRSPHR----PFYST-SSWRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST 192 (1081)
T ss_pred ceeeccccc----------cceeeeccCCCc----ceeee-ecccccCceeeecccCcchhhh-ccCCceEEEeccCCCc
Confidence 688888653 677899866543 22222 11111 248888788999986 568899999998554
Q ss_pred EEEEEcCC--cEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEE--EEeecCCcceeEEEEEecCCCEEEEEe---
Q 011452 227 MLYSISDK--NVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVL--KSFNHLLHRNKKVDFIEQFNEKLLVKQ--- 297 (485)
Q Consensus 227 ~l~tl~~~--~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L--~tl~~~~~~~~~V~f~~~~~~~lls~s--- 297 (485)
.+.+++++ .|+.++|.- -+.++++ +.|+|||.||-+.-... ++.+. .-.++.-.|.|...++.+.-+
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~---~~d~tvkfw~y~kSt~e~~~~vtt-~~piw~~r~~Pfg~g~~~mp~~G~ 268 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSS---SNDGTVKFWDYSKSTTESKRTVTT-NFPIWRGRYLPFGEGYCIMPMVGG 268 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhccc---CCCCceeeecccccccccceeccc-cCcceeccccccCceeEeccccCC
Confidence 78888874 688889983 5566654 56799999997643221 11111 134555556533334444422
Q ss_pred -------CCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCc----------EEEEEe-CCcEEEEeCC
Q 011452 298 -------ENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQ----------LFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 298 -------~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~----------llaS~s-D~TIklWd~~ 349 (485)
-+...+.|++.++ +.+.++.||.+.|-.|-|--.+. .|+|=| |.++|+|-+.
T Consensus 269 n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 269 NMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred eeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 2344456776665 56899999999998776632222 578888 9999999763
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0012 Score=77.10 Aligned_cols=249 Identities=14% Similarity=0.132 Sum_probs=131.2
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEee----ecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAF----CRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW----~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
.....|.++.+- .+.|..+..+|-|-+. +..+. ....-|.-+..|.+.+||||+++||.+. +...+-.|+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~--~~E~VG~vd~GI~a~~WSPD~Ella~vT--~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDED--EIEIVGSVDSGILAASWSPDEELLALVT--GEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCc--eeEEEEEEcCcEEEEEECCCcCEEEEEe--CCCEEEEEe
Confidence 445667777776 6667777778888777 54422 2334555677899999999999999866 322211111
Q ss_pred eeEEEEeEeccCCcCcccceeee---ccccCce-EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEc
Q 011452 167 CRSTRIEYIRRGKPDAGFALFES---ESLKWPG-FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~-~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS 242 (485)
+=|++..-.... ...|+. -.++|=. .--|.--.||..|-...|-++. .++.+.. + .++.--.|.|-
T Consensus 149 ----~~fd~i~E~~l~-~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~--~~d~~~~--s-~dd~~~~ISWR 218 (928)
T PF04762_consen 149 ----RDFDPISEVPLD-SDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP--KVDEGKL--S-WDDGRVRISWR 218 (928)
T ss_pred ----ccceEEEEeecC-ccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC--ccccCcc--c-cCCCceEEEEC
Confidence 112221100000 001111 0111100 1123222333322111222221 1111111 1 12222345555
Q ss_pred C-CceEEEEEc--CCC-CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEE---CCCCee
Q 011452 243 P-GIMLLIFTK--ASG-HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILD---VRNFEL 312 (485)
Q Consensus 243 p-g~~ll~sss--~~~-D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWD---v~tg~~ 312 (485)
. |...|++.- ..+ -..||||+-+ |++..+.+--.+--..++|- |.|..+++.+ ....|-.|. ++.|+.
T Consensus 219 GDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~Wr-PsG~lIA~~q~~~~~~~VvFfErNGLrhgeF 296 (928)
T PF04762_consen 219 GDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWR-PSGNLIASSQRLPDRHDVVFFERNGLRHGEF 296 (928)
T ss_pred CCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCC-CCCCEEEEEEEcCCCcEEEEEecCCcEeeeE
Confidence 4 444455433 122 3799999975 88766655211222367775 6677777766 356666665 333443
Q ss_pred EEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC---CcEEEEee
Q 011452 313 TEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GELVTSFE 357 (485)
Q Consensus 313 ~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~---G~ll~tl~ 357 (485)
.-.+......|..+.|++|+..||---...|+||-.. .-+.+.+.
T Consensus 297 ~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 297 TLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred ecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCEEEEEEEEE
Confidence 3333345668999999999999998665459999873 44666665
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.001 Score=70.35 Aligned_cols=314 Identities=13% Similarity=0.122 Sum_probs=145.7
Q ss_pred ecccCcEEEEeecCCcccEEEE-----EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 121 CRETNQRICFLNVTADEVIRSL-----FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 121 ~~~tG~~l~tl~g~~~~~i~sv-----~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
|..||-++-.|...+. .-.++ .|.+||+.|+.+|... .. +..-+-|+.+|+..+ |-........
T Consensus 16 D~~TG~~VtrLT~~~~-~~h~~YF~~~~ft~dG~kllF~s~~d-g~------~nly~lDL~t~~i~Q---LTdg~g~~~~ 84 (386)
T PF14583_consen 16 DPDTGHRVTRLTPPDG-HSHRLYFYQNCFTDDGRKLLFASDFD-GN------RNLYLLDLATGEITQ---LTDGPGDNTF 84 (386)
T ss_dssp -TTT--EEEE-S-TTS--EE---TTS--B-TTS-EEEEEE-TT-SS-------EEEEEETTT-EEEE------SS-B-TT
T ss_pred CCCCCceEEEecCCCC-cccceeecCCCcCCCCCEEEEEeccC-CC------cceEEEEcccCEEEE---CccCCCCCcc
Confidence 4667777776655322 11212 4588999998877632 22 466666777777622 2221111111
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEcCCcEEEEEEc--CCceEEEEEcC-C----------------
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKIS--PGIMLLIFTKA-S---------------- 254 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~~~~V~~VafS--pg~~ll~sss~-~---------------- 254 (485)
....+ |+.+.|.+--...+++--||++.+ ++|.++..++-...++ .+..+++.... .
T Consensus 85 -g~~~s-~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~ 162 (386)
T PF14583_consen 85 -GGFLS-PDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFY 162 (386)
T ss_dssp -T-EE--TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHH
T ss_pred -ceEEe-cCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHH
Confidence 12223 677888887777889999999887 6889988888666665 35555543221 0
Q ss_pred ---CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCC-cEEEEECCC-CeeEEecccCCCceEE-
Q 011452 255 ---GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENE-NLQILDVRN-FELTEVSRTEFMTPSA- 325 (485)
Q Consensus 255 ---~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~-tIkIWDv~t-g~~~~~l~gh~~~v~a- 325 (485)
-...|.--|+.||+.-..+.. ..+..-+.|+|.++..|+-+- +|. +-|||=+++ |.-.+-+..|.....+
T Consensus 163 ~a~p~~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~g 241 (386)
T PF14583_consen 163 EARPHCRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVG 241 (386)
T ss_dssp HC---EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEE
T ss_pred hhCCCceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccc
Confidence 113455668999987666653 245567899877666666663 555 357885543 3222333333221111
Q ss_pred -EEEcCCCcEEEEE-----e-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC-----CC
Q 011452 326 -FIFLYENQLFLTF-----R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD-----PL 392 (485)
Q Consensus 326 -vaFspdg~llaS~-----s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d-----~~ 392 (485)
=-|.|||..+.-- . +..|.=.|.. ++..... +..| ..-.-.++||+++|-=+.|++-| ..
T Consensus 242 HEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~-----~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~ 314 (386)
T PF14583_consen 242 HEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPW-----CSHFMSSPDGKLFVGDGGDAPVDVADAGGY 314 (386)
T ss_dssp EEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-S-----EEEEEE-TTSSEEEEEE-------------
T ss_pred cccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCc-----eeeeEEcCCCCEEEecCCCCCccccccccc
Confidence 1278999876532 1 3455566664 5432222 2223 34567789999998655432211 11
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCE-E
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE-I 471 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~-L 471 (485)
...++--|.|+++++++.. .|.-|. +++.+.++.+.- + . .-+.|||||+. |
T Consensus 315 ~~~~~p~i~~~~~~~~~~~-~l~~h~----------------~sw~v~~~~~q~---------~-h-Php~FSPDgk~Vl 366 (386)
T PF14583_consen 315 KIENDPWIYLFDVEAGRFR-KLARHD----------------TSWKVLDGDRQV---------T-H-PHPSFSPDGKWVL 366 (386)
T ss_dssp ------EEEEEETTTTEEE-EEEE-----------------------BTTBSST---------T------EE-TTSSEEE
T ss_pred eecCCcEEEEeccccCcee-eeeecc----------------CcceeecCCCcc---------C-C-CCCccCCCCCEEE
Confidence 1124557889999877653 455564 234443332111 0 1 24799999997 5
Q ss_pred EEecCCCcEEEc
Q 011452 472 YTGNRHGLVHVW 483 (485)
Q Consensus 472 aSgs~DgtVklW 483 (485)
++.+..|...|+
T Consensus 367 F~Sd~~G~~~vY 378 (386)
T PF14583_consen 367 FRSDMEGPPAVY 378 (386)
T ss_dssp EEE-TTSS-EEE
T ss_pred EECCCCCCccEE
Confidence 666677766553
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=91.12 Aligned_cols=214 Identities=18% Similarity=0.165 Sum_probs=138.7
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCccc-ceeee-ccccCceEEEEeCC
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAGF-ALFES-ESLKWPGFVEFDDV 203 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~~-~lf~~-~~~~~~~~V~Fs~p 203 (485)
+||.+.| |.+.||.++-=.|-+..|++|. | +|+++|.++ .|.-..+. --|+- .|.+.+..+-|- .
T Consensus 727 rL~nf~G-H~~~iRai~AidNENSFiSASk----D------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL-~ 794 (1034)
T KOG4190|consen 727 RLCNFTG-HQEKIRAIAAIDNENSFISASK----D------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFL-A 794 (1034)
T ss_pred eeecccC-cHHHhHHHHhcccccceeeccC----C------ceEEEEEeccccCccccceeeeEhhhccCcccceeee-e
Confidence 5777777 8889999988777788888774 3 599999983 33321110 02332 355556677785 5
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcC--CceEEEEEcCCCCeeEEEEecCCCeEEEEee---
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFN--- 274 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSp--g~~ll~sss~~~D~tIklWdi~tG~~L~tl~--- 274 (485)
+-+.+||+ |+-|.|||.--|+++....+ ..+.-|+--| +.-++++. .+...|||+.|...++-.-.++
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAg-csaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAG-CSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeee-ccchhhheeeecccccceeeEEecc
Confidence 67788765 89999999888887654431 1222232223 33333332 2334799999998876544332
Q ss_pred --cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE-EeC-C
Q 011452 275 --HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV-WNF-R 349 (485)
Q Consensus 275 --~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl-Wd~-~ 349 (485)
+....++.++. .+.|.+++++=.+|+|-+.|.++|+.+...+.-.-..-.++ -|..|.|++.. |.++.+ |.. +
T Consensus 872 a~~Pna~~R~iaV-a~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 872 APGPNALTRAIAV-ADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred CCCCchheeEEEe-ccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 22234566665 36788888888999999999999998775543221122222 45566677776 999999 987 5
Q ss_pred CcEEEEee
Q 011452 350 GELVTSFE 357 (485)
Q Consensus 350 G~ll~tl~ 357 (485)
|....+.+
T Consensus 950 gimh~q~k 957 (1034)
T KOG4190|consen 950 GIMHLQDK 957 (1034)
T ss_pred CeeeeccC
Confidence 87666554
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=81.41 Aligned_cols=215 Identities=14% Similarity=0.132 Sum_probs=140.3
Q ss_pred eEEEEeeCCCcEEEee-cCCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC----CCeEEEEeecCC
Q 011452 206 KVLTYSAQDSIYKVFD-LKNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE----DGTVLKSFNHLL 277 (485)
Q Consensus 206 ~~Las~s~D~tiKlWd-l~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~----tG~~L~tl~~~~ 277 (485)
..+.+.|.|.++|||= .++|+---+++ ...+.++.+++.-..|...-.. +++.-..+. .-..++....|+
T Consensus 37 ~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~n--gtvtefs~sedfnkm~~~r~~~~h~ 114 (404)
T KOG1409|consen 37 EGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDN--GTVTEFALSEDFNKMTFLKDYLAHQ 114 (404)
T ss_pred CCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEec--ceEEEEEhhhhhhhcchhhhhhhhh
Confidence 3466789999999994 33455333343 3578888888755444432222 455444322 223445556788
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-----CCcEEEEeC---C
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNF---R 349 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-----D~TIklWd~---~ 349 (485)
.++..+-|+.+ .+.+++.+.|..+.===.++|.-+ .++...-.+. +.+..+... -+.|.+-.+ .
T Consensus 115 ~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~~~l---g~Y~~~~~~t----~~~~d~~~~fvGd~~gqvt~lr~~~~~ 186 (404)
T KOG1409|consen 115 ARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESGNRL---GGYNFETPAS----ALQFDALYAFVGDHSGQITMLKLEQNG 186 (404)
T ss_pred cceeeEEecCC-ceeEEEeccccceEEEeeccCCcc---cceEeeccCC----CCceeeEEEEecccccceEEEEEeecC
Confidence 99999999754 678888899988764444444322 1221111111 111111111 223333333 3
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE-EEEecCCCCCCCCccccc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC-LAKIRASNGLPAENECSC 428 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~-l~tl~gH~~~~~~~~~~~ 428 (485)
-.++.++.+|... +..+.+.|.+++|.||.. |..|-+|||--.+- ...+.+|.+
T Consensus 187 ~~~i~~~~~h~~~-----~~~l~Wd~~~~~LfSg~~-----------d~~vi~wdigg~~g~~~el~gh~~--------- 241 (404)
T KOG1409|consen 187 CQLITTFNGHTGE-----VTCLKWDPGQRLLFSGAS-----------DHSVIMWDIGGRKGTAYELQGHND--------- 241 (404)
T ss_pred CceEEEEcCcccc-----eEEEEEcCCCcEEEeccc-----------cCceEEEeccCCcceeeeeccchh---------
Confidence 5688999999987 999999999999999987 79999999964332 345677863
Q ss_pred CCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 429 SGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|.+|.+-+--+.|.|+++||.|-+|+
T Consensus 242 -----------------------------kV~~l~~~~~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 242 -----------------------------KVQALSYAQHTRQLISCGEDGGIVVWN 268 (404)
T ss_pred -----------------------------hhhhhhhhhhheeeeeccCCCeEEEEe
Confidence 788888888889999999999999997
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00013 Score=73.28 Aligned_cols=226 Identities=11% Similarity=-0.007 Sum_probs=147.3
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcE------EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNV------QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V------~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+-.+||-|++-+..++|.+.+.+-...+.+... .-.+.+.- .+.++ +.|.|+|+.+++.+ .++... |-
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~-~~~i~---sndht~k~~~~~~~-s~~~~~-h~ 156 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKF-PLNIA---SNDHTGKTMVVSGD-SNKFAV-HN 156 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhccccc-ceeec---cCCcceeEEEEecC-ccccee-ec
Confidence 445889999999999999987664333332222 22333322 23343 46689999998654 333322 22
Q ss_pred cc--eeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEE--ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--
Q 011452 278 HR--NKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTE--VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-- 349 (485)
Q Consensus 278 ~~--~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~--~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-- 349 (485)
.. ..+++.+ +|+..+++-++-..|-.+.+.. ++.+. ....-.+.-....|+....+||.+. |+++.|||++
T Consensus 157 ~~~~~ns~~~s-nd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~ 235 (344)
T KOG4532|consen 157 QNLTQNSLHYS-NDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNM 235 (344)
T ss_pred cccceeeeEEc-CCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEeccc
Confidence 22 4577765 6776666678889999998875 33322 2333344556778999999999999 9999999996
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCC--CE-EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQ--DL-IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG--~~-LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
+.+..+... +-.|+++.++.+-|||-| ++ ++|-. =+-+.+-|+.+++-.+.+.-.++
T Consensus 236 ~tpm~~~ss-trp~hnGa~R~c~Fsl~g~lDLLf~sEh------------fs~~hv~D~R~~~~~q~I~i~~d------- 295 (344)
T KOG4532|consen 236 ATPMAEISS-TRPHHNGAFRVCRFSLYGLLDLLFISEH------------FSRVHVVDTRNYVNHQVIVIPDD------- 295 (344)
T ss_pred ccchhhhcc-cCCCCCCceEEEEecCCCcceEEEEecC------------cceEEEEEcccCceeeEEecCcc-------
Confidence 665544332 233455669999999865 23 33322 26788999999887777765443
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
+.+.- +...|..-.|+.++..++..+++..
T Consensus 296 ------------~~~~~-----------~tq~ifgt~f~~~n~s~~v~~e~~~ 325 (344)
T KOG4532|consen 296 ------------VERKH-----------NTQHIFGTNFNNENESNDVKNELQG 325 (344)
T ss_pred ------------ccccc-----------cccccccccccCCCcccccccchhh
Confidence 11111 1136888899999998888887653
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0013 Score=68.20 Aligned_cols=240 Identities=15% Similarity=0.144 Sum_probs=134.7
Q ss_pred CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC-----------
Q 011452 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD----------- 181 (485)
Q Consensus 113 ~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~----------- 181 (485)
..+..-++|+++++... +.. ....+....+||||+.||.+. + +.+-+.+...|+..
T Consensus 21 ~~~~y~i~d~~~~~~~~-l~~-~~~~~~~~~~sP~g~~~~~v~----~-------~nly~~~~~~~~~~~lT~dg~~~i~ 87 (353)
T PF00930_consen 21 FKGDYYIYDIETGEITP-LTP-PPPKLQDAKWSPDGKYIAFVR----D-------NNLYLRDLATGQETQLTTDGEPGIY 87 (353)
T ss_dssp EEEEEEEEETTTTEEEE-SS--EETTBSEEEE-SSSTEEEEEE----T-------TEEEEESSTTSEEEESES--TTTEE
T ss_pred cceeEEEEecCCCceEE-CcC-CccccccceeecCCCeeEEEe----c-------CceEEEECCCCCeEEeccccceeEE
Confidence 35678899999876554 433 245688999999999999876 2 24555554444321
Q ss_pred cccc--eeeeccccCceEEEEeCCCCeEEEEeeCC-CcEEEeecCCCeEEEEEcCC----cEEEEEEc-CCceEEEEEcC
Q 011452 182 AGFA--LFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFTKA 253 (485)
Q Consensus 182 ~~~~--lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-~tiKlWdl~~g~~l~tl~~~----~V~~VafS-pg~~ll~sss~ 253 (485)
.|.+ +.+.|-+.....+-|| |||+.||....| ..|+.+.+- ...... .+..+++- ||.....
T Consensus 88 nG~~dwvyeEEv~~~~~~~~WS-pd~~~la~~~~d~~~v~~~~~~-----~~~~~~~~yp~~~~~~YPk~G~~np~---- 157 (353)
T PF00930_consen 88 NGVPDWVYEEEVFDRRSAVWWS-PDSKYLAFLRFDEREVPEYPLP-----DYSPPDSQYPEVESIRYPKAGDPNPR---- 157 (353)
T ss_dssp ESB--HHHHHHTSSSSBSEEE--TTSSEEEEEEEE-TTS-EEEEE-----EESSSTESS-EEEEEE--BTTS---E----
T ss_pred cCccceeccccccccccceEEC-CCCCEEEEEEECCcCCceEEee-----ccCCccccCCcccccccCCCCCcCCc----
Confidence 0011 1111224445578898 899999998644 444444321 111221 36666665 5665421
Q ss_pred CCCeeEEEEecCCCeEEE--Ee---ecCCcceeEEEEEecCCCEEEEE--e---CCCcEEEEECCCCeeEEeccc-CCCc
Q 011452 254 SGHVPLKILSIEDGTVLK--SF---NHLLHRNKKVDFIEQFNEKLLVK--Q---ENENLQILDVRNFELTEVSRT-EFMT 322 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~--tl---~~~~~~~~~V~f~~~~~~~lls~--s---~D~tIkIWDv~tg~~~~~l~g-h~~~ 322 (485)
..+.|+|+++|+... .. ..-...+..|.|+ +++.++++. . ..-.+.+.|+.++++...... ...+
T Consensus 158 ---v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~-~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~W 233 (353)
T PF00930_consen 158 ---VSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS-PDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGW 233 (353)
T ss_dssp ---EEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE-ETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSS
T ss_pred ---eEEEEEECCCCcEEEeeeccccCCCccCcccceec-CCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcc
Confidence 578889999998632 22 1223445689997 445546664 3 334567779988876444322 2223
Q ss_pred e---EEEEEc-CCCcEEEEEe--CCcEEEE--eCCCcEEEEeecCCCCCCCCCee-EEEECCCCCEEEEEe
Q 011452 323 P---SAFIFL-YENQLFLTFR--NRTVAVW--NFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYC 384 (485)
Q Consensus 323 v---~avaFs-pdg~llaS~s--D~TIklW--d~~G~ll~tl~gH~~~~~~~~v~-svafSpDG~~LaS~s 384 (485)
| ..+.|. +++..++-.+ ||--.|+ +.+|...+-|+... |. |. -+.++++++.|.=-+
T Consensus 234 v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G~-~~----V~~i~~~d~~~~~iyf~a 299 (353)
T PF00930_consen 234 VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSGD-WE----VTSILGWDEDNNRIYFTA 299 (353)
T ss_dssp SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-SS-S-----EEEEEEEECTSSEEEEEE
T ss_pred eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccCc-ee----ecccceEcCCCCEEEEEe
Confidence 2 356665 7777666555 7755555 55677777776443 41 64 478899988776433
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.3e-05 Score=76.24 Aligned_cols=194 Identities=11% Similarity=-0.043 Sum_probs=126.7
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--EEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC-CCeEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE-DGTVL 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~--tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~-tG~~L 270 (485)
.+.|+ +-|.-++++-.++.|-+=+-....+.. +++ +-+.|..+|+. +--++.++ ++|..+.-||+. -++.+
T Consensus 126 slD~~-~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytG--gDD~~l~~~D~R~p~~~i 202 (339)
T KOG0280|consen 126 SLDIS-TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTG--GDDGSLSCWDIRIPKTFI 202 (339)
T ss_pred EEEee-ccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEec--CCCceEEEEEecCCccee
Confidence 35676 456667777667777644444333333 444 34789999994 44455554 356899999998 55666
Q ss_pred EE-eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCc--EEEEEeCCcEEEE
Q 011452 271 KS-FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVW 346 (485)
Q Consensus 271 ~t-l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~--llaS~sD~TIklW 346 (485)
.+ -+-|...|-+|.-++|++-.+++|++|++|++||.++ ++++..- .-.+.||.+..+|.-+ +|+.+--+-.||-
T Consensus 203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~ 281 (339)
T KOG0280|consen 203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHNGAKIL 281 (339)
T ss_pred eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhcCceEE
Confidence 55 4456677888888888888999999999999999995 6654432 1236899999988544 4444444446777
Q ss_pred eCC---Cc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE-EEeCCCCe
Q 011452 347 NFR---GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN-ISNILTGK 409 (485)
Q Consensus 347 d~~---G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk-lWdl~TGk 409 (485)
+.+ +| .+.+.+.|..- +..-.+..-...||++|. -|+.|+ +|-.-||.
T Consensus 282 ~~~~~~~e~~~~~~s~~~hdSl-----~YG~DWd~~~~~lATCsF----------YDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 282 DSSDKVLEFQIVLPSDKIHDSL-----CYGGDWDSKDSFLATCSF----------YDKKIRQLWLHITGE 336 (339)
T ss_pred Eecccccchheeeeccccccce-----eeccccccccceeeeeec----------cccceeeeeeeccCC
Confidence 773 55 45556666533 223333222356899876 378866 88665553
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-05 Score=78.82 Aligned_cols=266 Identities=14% Similarity=0.201 Sum_probs=153.5
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc-----EEEEeecCCc------------ccEEEEEEeeCCC---EE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----RICFLNVTAD------------EVIRSLFYNKNND---SL 151 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-----~l~tl~g~~~------------~~i~sv~~spdg~---~L 151 (485)
....|.+|.|. |.+||+|...|.+-+|.++.-. .+..+++ |+ +.|..|-+-.+++ .|
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQs-he~EFDYLkSleieEKin~I~w~~~t~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQS-HELEFDYLKSLEIEEKINAIEWFDDTGRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcc-cccchhhhhhccHHHHhhheeeecCCCcceEE
Confidence 44568888998 9999999999999999877432 1111333 32 2466776655543 34
Q ss_pred EEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-------
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN------- 224 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~------- 224 (485)
.+ +.| ++++||-|....+ ++.....+ ..++.| |-.|. |+|-. .+++=.+..
T Consensus 104 ls-----tNd------ktiKlWKiyeknl----k~va~nnl--s~~~~~-~~~g~-~~s~~---~l~lprls~hd~iiaa 161 (460)
T COG5170 104 LS-----TND------KTIKLWKIYEKNL----KVVAENNL--SDSFHS-PMGGP-LTSTK---ELLLPRLSEHDEIIAA 161 (460)
T ss_pred Ee-----cCC------ceeeeeeeecccc----hhhhcccc--cccccc-ccCCC-cCCHH---HhhcccccccceEEEe
Confidence 44 245 7999999865543 11111111 112222 12222 22111 111111110
Q ss_pred -CeEEE-EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC--CCeE-EEEeec-----CCcceeEEEEEecCCCEEE
Q 011452 225 -YTMLY-SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE--DGTV-LKSFNH-----LLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 225 -g~~l~-tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~--tG~~-L~tl~~-----~~~~~~~V~f~~~~~~~ll 294 (485)
..-+| ..|...|++|.|..+...+.++ +|-.|-||+++ +|.- +..++- ++.-+.+..|+|.-...+.
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSa---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fm 238 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSA---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFM 238 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeec---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEE
Confidence 01112 2234578999999654444442 45799999875 3221 111221 1122346677654444555
Q ss_pred EEeCCCcEEEEECCCCe-eE---E----e--------cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC--CcEEEEe
Q 011452 295 VKQENENLQILDVRNFE-LT---E----V--------SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSF 356 (485)
Q Consensus 295 s~s~D~tIkIWDv~tg~-~~---~----~--------l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~--G~ll~tl 356 (485)
-++..|+|+|-|++... |. . + +.+-...|+.+-|+|.|++++|-.=-||||||++ ..++.|.
T Consensus 239 YSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k~pikTi 318 (460)
T COG5170 239 YSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred EecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEecccccCCceee
Confidence 57899999999999432 11 0 1 1122346788899999999998777899999995 6788887
Q ss_pred ecCCC--------CCCCCC--eeEEEECCCCCEEEEEec
Q 011452 357 EDHLL--------WHPDCN--TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 357 ~gH~~--------~~~~~~--v~svafSpDG~~LaS~s~ 385 (485)
.=|.. ...++. --.+.||-|.+.+.|||.
T Consensus 319 ~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy 357 (460)
T COG5170 319 PMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSY 357 (460)
T ss_pred chHHHHHHHHHhhhhccceeeeEEEEecCCccccccccc
Confidence 55542 111221 134789999999999886
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.012 Score=62.01 Aligned_cols=270 Identities=11% Similarity=0.109 Sum_probs=180.8
Q ss_pred EEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce
Q 011452 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (485)
Q Consensus 117 iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~ 196 (485)
+.+++..+.+....+.. .. ....+.++|+|..+..+.... ++ +-.+... .+. ...+-.....++.
T Consensus 13 ~~v~~~~~~~~~~~~~~-~~-~~~~v~~~~~g~~~~v~~~~~-~~----------~~~~~~~-~n~-~~~~~~~g~~~p~ 77 (381)
T COG3391 13 VSVINTGTNKVTAAISL-GR-GPGGVAVNPDGTQVYVANSGS-ND----------VSVIDAT-SNT-VTQSLSVGGVYPA 77 (381)
T ss_pred eEEEeecccEEEEEeec-CC-CCceeEEcCccCEEEEEeecC-ce----------eeecccc-cce-eeeeccCCCcccc
Confidence 55566555555555543 22 568899999997765544322 11 1111122 110 1111110114455
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.+++++...+..+....+.+|.+-|..+.+.+.++. +..-..++++| +..+.++.......++-+.|-.+++++++..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~ 157 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP 157 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe
Confidence 788875555688888888999999999888888875 55778999997 5476666553245899999999999998865
Q ss_pred cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEE-e---cccCCCceEEEEEcCCCcEEEEEe--C--CcEEE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTE-V---SRTEFMTPSAFIFLYENQLFLTFR--N--RTVAV 345 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~-~---l~gh~~~v~avaFspdg~llaS~s--D--~TIkl 345 (485)
--... ..+++. |+++++.+. ..+++|-+.|.++-...+ . ..+-...+.-++++|+|+.+-... + ++|..
T Consensus 158 vG~~P-~~~a~~-p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 158 VGNTP-TGVAVD-PDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred cCCCc-ceEEEC-CCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 32223 678875 788888887 589999999988777664 1 112344678899999999655554 3 58888
Q ss_pred EeCC-CcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 346 WNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 346 Wd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
-|.. +....+ +..-..+ -..++++|+|+.+-.... ..+++.+-|..+.+...++....
T Consensus 236 id~~~~~v~~~~~~~~~~~-----~~~v~~~p~g~~~yv~~~----------~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 236 IDTATGNVTATDLPVGSGA-----PRGVAVDPAGKAAYVANS----------QGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred EeCCCceEEEeccccccCC-----CCceeECCCCCEEEEEec----------CCCeEEEEeCCCCceeeeecccc
Confidence 8886 665554 2222212 357999999999988754 25889999999888888876655
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0051 Score=66.81 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=152.6
Q ss_pred EecCEEEEEeCCCeEEeeecccCcEEEEeecCCc-----c--cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTAD-----E--VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 103 ~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~-----~--~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+.++.|+.++.++.+...|.+||+.+=....... . ..+.+++. +++.++.++. + ..+.-.|.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~------g~v~AlD~ 127 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----D------GRLVALDA 127 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----C------CeEEEEEC
Confidence 4578888899999999999999998765443211 0 01111221 2245555332 2 35556677
Q ss_pred ccCCcCcccceeeeccccC-------ceEEEEeCCCCeEEEEe--------eCCCcEEEeecCCCeEEEEEcC-------
Q 011452 176 RRGKPDAGFALFESESLKW-------PGFVEFDDVNGKVLTYS--------AQDSIYKVFDLKNYTMLYSISD------- 233 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~-------~~~V~Fs~pnG~~Las~--------s~D~tiKlWdl~~g~~l~tl~~------- 233 (485)
++|+. +|+.+.... .....+. ++.+++.. ..++.+.-.|+++|+.+.....
T Consensus 128 ~TG~~-----~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~ 200 (488)
T cd00216 128 ETGKQ-----VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNA 200 (488)
T ss_pred CCCCE-----eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCC
Confidence 88886 566532111 0122343 35554432 2367888889999998766531
Q ss_pred ---------------CcEE-EEEEcC-CceEEEEEcCC---------------CCeeEEEEecCCCeEEEEeecCCccee
Q 011452 234 ---------------KNVQ-EIKISP-GIMLLIFTKAS---------------GHVPLKILSIEDGTVLKSFNHLLHRNK 281 (485)
Q Consensus 234 ---------------~~V~-~VafSp-g~~ll~sss~~---------------~D~tIklWdi~tG~~L~tl~~~~~~~~ 281 (485)
..|+ ..++.+ ++++.+..... .+..|--+|++||+++-.++.-.+..+
T Consensus 201 ~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 201 FPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 1122 245554 45555543221 124788999999999988762112111
Q ss_pred ------EEEEEe---cCCC---EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE-----------
Q 011452 282 ------KVDFIE---QFNE---KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF----------- 338 (485)
Q Consensus 282 ------~V~f~~---~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~----------- 338 (485)
...+.. -+++ .+++++.++.+...|.+||+.+-....- ....+.+| +.+++.+
T Consensus 281 ~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 281 DYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred ccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEEccccccccCcccc
Confidence 111110 1222 3566789999999999999986543210 01122233 3333311
Q ss_pred ------e-CCcEEEEeCC-CcEEEEeecCC---CCCCC-CC-eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 339 ------R-NRTVAVWNFR-GELVTSFEDHL---LWHPD-CN-TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 339 ------s-D~TIklWd~~-G~ll~tl~gH~---~~~~~-~~-v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
. ++.+---|.. |+.+-+.+-.. .|... .. ...++. .|.+|..++. ||.|.-.|.
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~-----------dG~l~ald~ 423 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAA-----------DGYFRAFDA 423 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECC-----------CCeEEEEEC
Confidence 1 3445555553 66554443210 00000 00 112222 4567777765 799999999
Q ss_pred CCCeEEEEecC
Q 011452 406 LTGKCLAKIRA 416 (485)
Q Consensus 406 ~TGk~l~tl~g 416 (485)
.||+.+.+.+-
T Consensus 424 ~tG~~lW~~~~ 434 (488)
T cd00216 424 TTGKELWKFRT 434 (488)
T ss_pred CCCceeeEEEC
Confidence 99999988754
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00042 Score=76.99 Aligned_cols=186 Identities=17% Similarity=0.123 Sum_probs=117.0
Q ss_pred CCCeEEE-EeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~La-s~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|||+.|. ++-..+.+-+.|.++.+...++. +.+-.-++++|++.++..++- |.|.|..+..+.-. ..-
T Consensus 202 nDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsy---------NsE~G~tl~em~a~-e~d 271 (635)
T PRK02888 202 NDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCY---------NSEEGVTLAEMMAA-ERD 271 (635)
T ss_pred CCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEecc---------CcccCcceeeeccc-cCc
Confidence 6887653 33456788888888877777665 445567899986666655431 22334433333210 111
Q ss_pred eEEEEEe-------cCCCEEEEEeCCCcEEEEECCC-----CeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEE
Q 011452 281 KKVDFIE-------QFNEKLLVKQENENLQILDVRN-----FELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVW 346 (485)
Q Consensus 281 ~~V~f~~-------~~~~~lls~s~D~tIkIWDv~t-----g~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklW 346 (485)
..+.|.. ++|....+ .+++|.+.|.++ .+.+..+. -...+..+++||||+++..++ +.||.|-
T Consensus 272 ~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVI 348 (635)
T PRK02888 272 WVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVI 348 (635)
T ss_pred eEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEE
Confidence 3333321 23444444 478999999998 34444432 334788899999999988887 9999999
Q ss_pred eCC-Cc------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC------
Q 011452 347 NFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT------ 407 (485)
Q Consensus 347 d~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T------ 407 (485)
|++ -+ ++...+--..+ .-.+|.++|....|-.- |..|-.||+.+
T Consensus 349 Dv~k~k~~~~~~~~~~~~vvaevevGlGP------LHTaFDg~G~aytslf~-----------dsqv~kwn~~~a~~~~~ 411 (635)
T PRK02888 349 DVRKLDDLFDGKIKPRDAVVAEPELGLGP------LHTAFDGRGNAYTTLFL-----------DSQIVKWNIEAAIRAYK 411 (635)
T ss_pred EChhhhhhhhccCCccceEEEeeccCCCc------ceEEECCCCCEEEeEee-----------cceeEEEehHHHHHHhc
Confidence 985 33 23333321211 35889999987777665 67888899987
Q ss_pred ----CeEEEEecCCC
Q 011452 408 ----GKCLAKIRASN 418 (485)
Q Consensus 408 ----Gk~l~tl~gH~ 418 (485)
...+.++.-|.
T Consensus 412 g~~~~~v~~k~dV~y 426 (635)
T PRK02888 412 GEKVDPIVQKLDVHY 426 (635)
T ss_pred cccCCcceecccCCC
Confidence 34566665444
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-06 Score=96.04 Aligned_cols=188 Identities=17% Similarity=0.206 Sum_probs=132.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecC-CCeEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DGTVLKS 272 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~-tG~~L~t 272 (485)
.++|+ .+...|+-|+.-|.||++++.+|.+.-+. |+..|.-|--| +|.++|++++.+. --..||+.. +|...++
T Consensus 1106 c~afs-~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1106 CIAFS-GGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-PLSALWDASSTGGPRHS 1183 (1516)
T ss_pred eEEee-cCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC-chHHHhccccccCcccc
Confidence 58898 68889999999999999999999977554 56688888888 6778887765442 234789864 4555666
Q ss_pred eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-ccc---CCCceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRT---EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~g---h~~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
|.+ -..|.|+.. -+.-+.|..-.-.-|||++|+..+.+ +.+ -+-.=+.+.|||+.++++ .||. |||+
T Consensus 1184 f~e----d~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndGv--LWDv 1254 (1516)
T KOG1832|consen 1184 FDE----DKAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDGV--LWDV 1254 (1516)
T ss_pred ccc----cceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCce--eeee
Confidence 653 357778632 23334455556788999999987776 322 111225566899888875 3553 8999
Q ss_pred C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 349 R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 ~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+ -+-++.|..-... -+=.|.|.|.-++.-+. |||+.|-+.|++...-
T Consensus 1255 R~~~aIh~FD~ft~~------~~G~FHP~g~eVIINSE----------------IwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1255 RIPEAIHRFDQFTDY------GGGGFHPSGNEVIINSE----------------IWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ccHHHHhhhhhheec------ccccccCCCceEEeech----------------hhhhHHHHHHhcCccc
Confidence 7 6667766544321 23358999999998764 8999998888776553
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.02 Score=60.07 Aligned_cols=245 Identities=18% Similarity=0.168 Sum_probs=141.9
Q ss_pred cEEEEEEeeCCCEEEEE-EeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce--EEEEeCCCCeEEEEeeCC
Q 011452 138 VIRSLFYNKNNDSLITV-SVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG--FVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~-S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~--~V~Fs~pnG~~Las~s~D 214 (485)
.+....+||||+.||.+ +..|++. .++++.|+.+|+.. .. .+..+. +++|. +||+.|.+...|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~------~~l~v~Dl~tg~~l------~d-~i~~~~~~~~~W~-~d~~~~~y~~~~ 190 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEW------YTLRVFDLETGKFL------PD-GIENPKFSSVSWS-DDGKGFFYTRFD 190 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSE------EEEEEEETTTTEEE------EE-EEEEEESEEEEEC-TTSSEEEEEECS
T ss_pred EeeeeeECCCCCEEEEEecCCCCce------EEEEEEECCCCcCc------CC-cccccccceEEEe-CCCCEEEEEEeC
Confidence 34467899999998865 5555555 67889999999762 21 112222 38997 799998888655
Q ss_pred C-----------cEEEeecCCCe----EEEEEcCC-c-EEEEEEcC-CceEEEEEcCCCC-eeEEEEecCCC----eEEE
Q 011452 215 S-----------IYKVFDLKNYT----MLYSISDK-N-VQEIKISP-GIMLLIFTKASGH-VPLKILSIEDG----TVLK 271 (485)
Q Consensus 215 ~-----------tiKlWdl~~g~----~l~tl~~~-~-V~~VafSp-g~~ll~sss~~~D-~tIklWdi~tG----~~L~ 271 (485)
. .|+.|.+.+.. +++.-.+. . ...+..|+ +..+++.+....+ ..+.+.++.++ ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~ 270 (414)
T PF02897_consen 191 EDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPK 270 (414)
T ss_dssp TTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEE
T ss_pred cccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcE
Confidence 4 37788877653 45555443 3 67888996 5555655555555 77888899876 2333
Q ss_pred EeecCC-cceeEEEEEecCCCEEEEEe----CCCcEEEEECCCCee---EEecccCCCceEEEEEcC-CCcEEEEEe-CC
Q 011452 272 SFNHLL-HRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNFEL---TEVSRTEFMTPSAFIFLY-ENQLFLTFR-NR 341 (485)
Q Consensus 272 tl~~~~-~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg~~---~~~l~gh~~~v~avaFsp-dg~llaS~s-D~ 341 (485)
.+.... +....|.. .++.+.+-+ .++.|---++.+... ..++..|...+.-..+.. .+.++++-. |+
T Consensus 271 ~l~~~~~~~~~~v~~---~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~ 347 (414)
T PF02897_consen 271 LLSPREDGVEYYVDH---HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG 347 (414)
T ss_dssp EEEESSSS-EEEEEE---ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT
T ss_pred EEeCCCCceEEEEEc---cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC
Confidence 333222 22233333 256555532 446666667777652 335555555333333333 445555555 55
Q ss_pred --cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 342 --TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 342 --TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
.|+++++. |.....+.--.. +.|.++...++++.+ ++++. .-.-.+|--+|+.||+..
T Consensus 348 ~~~l~v~~~~~~~~~~~~~~p~~----g~v~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 348 SSRLRVYDLDDGKESREIPLPEA----GSVSGVSGDFDSDELRFSYSS--------FTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEEEEEETT-TEEEEEEESSSS----SEEEEEES-TT-SEEEEEEEE--------TTEEEEEEEEETTTTCEE
T ss_pred ccEEEEEECCCCcEEeeecCCcc----eEEeccCCCCCCCEEEEEEeC--------CCCCCEEEEEECCCCCEE
Confidence 78899998 887766653221 225666655665544 34332 112368999999998763
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.7e-06 Score=95.35 Aligned_cols=246 Identities=15% Similarity=0.167 Sum_probs=151.8
Q ss_pred cccchhhhhhhcccccccCccc----ccchhHHHhhhccccccccccCCCCcccccccccccccceEEEEEe--cCEEEE
Q 011452 37 GFVNSVKKLQRREISSKRDRAF----TMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFA 110 (485)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s--~~~ias 110 (485)
...|---.|-+||.-....+-. ..-+.=-|||+++ .|--|+.- -..++|+ .+.|+.
T Consensus 1057 ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~---~frd~~~~---------------fTc~afs~~~~hL~v 1118 (1516)
T KOG1832|consen 1057 APLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWR---SFRDETAL---------------FTCIAFSGGTNHLAV 1118 (1516)
T ss_pred cchhhhhcccchhhcCcccccccCcccchhhHhhcccch---hhhccccc---------------eeeEEeecCCceEEe
Confidence 3555566677777765543322 2333334566554 33333332 3455566 788999
Q ss_pred EeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCCcCcccceeee
Q 011452 111 LAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGKPDAGFALFES 189 (485)
Q Consensus 111 ~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~~~~~~~lf~~ 189 (485)
|+..|.+|++|..+|+.....|. |...|.-|--|.||.++.+.|..++- -.-||+.. .|++ ...|..
T Consensus 1119 G~~~Geik~~nv~sG~~e~s~nc-H~SavT~vePs~dgs~~Ltsss~S~P--------lsaLW~~~s~~~~---~Hsf~e 1186 (1516)
T KOG1832|consen 1119 GSHAGEIKIFNVSSGSMEESVNC-HQSAVTLVEPSVDGSTQLTSSSSSSP--------LSALWDASSTGGP---RHSFDE 1186 (1516)
T ss_pred eeccceEEEEEccCccccccccc-cccccccccccCCcceeeeeccccCc--------hHHHhccccccCc---cccccc
Confidence 99999999999999999998888 88999999999999999887764422 23467752 2222 122332
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-cC-----CcEEEEEEcCCceEEEEEcCCCCeeEEEEe
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SD-----KNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~-----~~V~~VafSpg~~ll~sss~~~D~tIklWd 263 (485)
. ..|+|+.. -+.-+-|..-...-|+|++|+..+.++ .+ ..-+.+.|||...|+.- |+ -|||
T Consensus 1187 d-----~~vkFsn~-~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln-----dG--vLWD 1253 (1516)
T KOG1832|consen 1187 D-----KAVKFSNS-LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN-----DG--VLWD 1253 (1516)
T ss_pred c-----ceeehhhh-HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-----Cc--eeee
Confidence 1 26899732 222222323356779999999977773 32 12367899997776542 22 3899
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+..-+-++.|......... -|. |.|..+++-+ .|||++|.++++....-. --+|.|...|..
T Consensus 1254 vR~~~aIh~FD~ft~~~~G-~FH-P~g~eVIINS-----EIwD~RTF~lLh~VP~Ld--qc~VtFNstG~V 1315 (1516)
T KOG1832|consen 1254 VRIPEAIHRFDQFTDYGGG-GFH-PSGNEVIINS-----EIWDMRTFKLLHSVPSLD--QCAVTFNSTGDV 1315 (1516)
T ss_pred eccHHHHhhhhhheecccc-ccc-CCCceEEeec-----hhhhhHHHHHHhcCcccc--ceEEEeccCccc
Confidence 8877667666432222112 354 5555566654 499999998776543211 134556655553
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.053 Score=59.83 Aligned_cols=281 Identities=14% Similarity=0.165 Sum_probs=157.9
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccE----------EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i----------~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
.+++|+.++.++.+...|.+||+.+=.........+ +.+++. ++.|+.++. +. .+---
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~---dg-------~l~AL 135 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL---DA-------RLVAL 135 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC---CC-------EEEEE
Confidence 478888899999999999999998876543211111 223332 234544332 22 23333
Q ss_pred EeccCCcCcccceeeeccccCce-EEEEeC---CCCeEEEEee-----CCCcEEEeecCCCeEEEEEcC-----------
Q 011452 174 YIRRGKPDAGFALFESESLKWPG-FVEFDD---VNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD----------- 233 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~-~V~Fs~---pnG~~Las~s-----~D~tiKlWdl~~g~~l~tl~~----------- 233 (485)
|..+|++ +|+.....+.. ....++ .+|++++..+ .++.|.-.|+++|+.+-.+..
T Consensus 136 Da~TGk~-----~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~ 210 (527)
T TIGR03075 136 DAKTGKV-----VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKA 210 (527)
T ss_pred ECCCCCE-----EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccc
Confidence 6678886 45542111100 000011 1566666433 368899999999998755431
Q ss_pred ----------------------CcEEE-EEEcC-CceEEEEEcC----C-----CC----eeEEEEecCCCeEEEEeecC
Q 011452 234 ----------------------KNVQE-IKISP-GIMLLIFTKA----S-----GH----VPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 234 ----------------------~~V~~-VafSp-g~~ll~sss~----~-----~D----~tIklWdi~tG~~L~tl~~~ 276 (485)
..||. .++-| -+.+.+..+. . .| ..|-=.|++||+..-.|+..
T Consensus 211 ~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~ 290 (527)
T TIGR03075 211 DKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTT 290 (527)
T ss_pred ccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCC
Confidence 12332 34555 2333222211 0 11 26667799999999888854
Q ss_pred CcceeEE-------EEE-ecCCC--EEE-EEeCCCcEEEEECCCCeeEEe--cccCCCce--------------------
Q 011452 277 LHRNKKV-------DFI-EQFNE--KLL-VKQENENLQILDVRNFELTEV--SRTEFMTP-------------------- 323 (485)
Q Consensus 277 ~~~~~~V-------~f~-~~~~~--~ll-s~s~D~tIkIWDv~tg~~~~~--l~gh~~~v-------------------- 323 (485)
.|-++.- -+- +.+++ +++ .++.++.+-+.|-+||+++.. ...+..++
T Consensus 291 ~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~ 370 (527)
T TIGR03075 291 PHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSAD 370 (527)
T ss_pred CCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCC
Confidence 4444422 221 12344 344 568999999999999998621 00000000
Q ss_pred -------------------EEEEEcCCCcEEEEEe-C---------------------------------CcEEEEeCC-
Q 011452 324 -------------------SAFIFLYENQLFLTFR-N---------------------------------RTVAVWNFR- 349 (485)
Q Consensus 324 -------------------~avaFspdg~llaS~s-D---------------------------------~TIklWd~~- 349 (485)
...++.|+..++.... + +.|.-||+.
T Consensus 371 ~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~t 450 (527)
T TIGR03075 371 GKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPIT 450 (527)
T ss_pred CCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCC
Confidence 1145566555543222 2 457778884
Q ss_pred CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|+.+-..+..... ..+.. .-.|.+++.++. ||.++.+|.+|||.|..++-..
T Consensus 451 Gk~~W~~~~~~p~-----~~~~l-~t~g~lvf~g~~-----------~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 451 GKIVWEHKEDFPL-----WGGVL-ATAGDLVFYGTL-----------EGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CceeeEecCCCCC-----CCcce-EECCcEEEEECC-----------CCeEEEEECCCCCEeEEEeCCC
Confidence 8887766533222 12222 224557777765 7999999999999999886543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.019 Score=59.98 Aligned_cols=278 Identities=12% Similarity=0.167 Sum_probs=146.9
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee---ecc
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE---SES 191 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~---~~~ 191 (485)
+.+.+.|-++|+.|-.+..+.. -.+.+||||+.+.+++.+-+-....=.---+.+||..+=++..-..+=. ...
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~---~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFL---GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESS---EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEECCCCcEEEEeecccC---CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 3688899999998888766443 4477899999999987654332111122245567753322210000000 001
Q ss_pred ccCceEEEEeCCCCeEEEEe--eCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecC-CC
Q 011452 192 LKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE-DG 267 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~--s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~-tG 267 (485)
+.+....+++ .||+.+.-. +--..|-|=|++..+.+..+..-..+-|==+ +++..+.+ . |+++---.+. .|
T Consensus 94 ~~~~~~~~ls-~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC-~---DGsl~~v~Ld~~G 168 (342)
T PF06433_consen 94 VPYKNMFALS-ADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLC-G---DGSLLTVTLDADG 168 (342)
T ss_dssp S--GGGEEE--TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEE-T---TSCEEEEEETSTS
T ss_pred cccccceEEc-cCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEe-c---CCceEEEEECCCC
Confidence 2334456787 688876543 4456788889998888877753333333223 34333322 2 2344333333 67
Q ss_pred eEEEEeecCCcceeEEEE-E---ecCCCEEEEEeCCCcEEEEECCCCee-----EEecc---cCCCc----eEEEEEcCC
Q 011452 268 TVLKSFNHLLHRNKKVDF-I---EQFNEKLLVKQENENLQILDVRNFEL-----TEVSR---TEFMT----PSAFIFLYE 331 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f-~---~~~~~~lls~s~D~tIkIWDv~tg~~-----~~~l~---gh~~~----v~avaFspd 331 (485)
++..+-..--+....-.| . ...+++++--+.+|.|+--|+..... ...+. ...+| -..+++.+.
T Consensus 169 k~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 169 KEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp SEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred CEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 765332210011111111 1 12345666677778777777765431 11110 00011 112666654
Q ss_pred C-cEEEEE------e--CCcEEEE--eCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCC
Q 011452 332 N-QLFLTF------R--NRTVAVW--NFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 332 g-~llaS~------s--D~TIklW--d~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~D 397 (485)
. ++++-- + |.-=.|| |+. ++.+..++ .|. +.+|++|.|.+ +|...+. .+
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~-------~~Si~Vsqd~~P~L~~~~~----------~~ 311 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHP-------IDSIAVSQDDKPLLYALSA----------GD 311 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEE-------ESEEEEESSSS-EEEEEET----------TT
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCc-------cceEEEccCCCcEEEEEcC----------CC
Confidence 4 444421 1 3333455 664 99999887 443 78999999998 5545443 26
Q ss_pred CeEEEEeCCCCeEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH 417 (485)
+++.++|..||+.+.++.+-
T Consensus 312 ~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 312 GTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TEEEEEETTT--EEEEE---
T ss_pred CeEEEEeCcCCcEEeehhcc
Confidence 99999999999999999763
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.4e-05 Score=48.70 Aligned_cols=27 Identities=15% Similarity=0.513 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|+++.|+|+++.+++|+.|+.|++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 899999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00072 Score=72.56 Aligned_cols=145 Identities=14% Similarity=0.077 Sum_probs=93.6
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCe--eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEE--EC
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHV--PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DV 307 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~--tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW--Dv 307 (485)
...+..-+|+|++..+++.+-...+ .+.++|+.+|+.-+.++. .+....-+|+ ||+.+|+.+. .|+...|| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-~g~~~~P~fs-pDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-NGNNGAPAFS-PDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-CCccCCccCC-CCCCEEEEEECCCCCccEEEEcC
Confidence 3567888999855554443322223 589999999987666551 2445567786 7899998874 77776666 88
Q ss_pred CCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 308 ~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
.+++..+ +..-...-..=.|+|||+.++=.+ .| .|-+.|.+|.-++.++-+... -..-.+||||++|+..
T Consensus 270 ~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~-----~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 270 DGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGG-----NSNPVWSPDGDKIVFE 343 (425)
T ss_pred CCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCC-----CcCccCCCCCCEEEEE
Confidence 8877555 322221112345899999998776 44 444555667765555544332 1245679999999998
Q ss_pred ec
Q 011452 384 CK 385 (485)
Q Consensus 384 s~ 385 (485)
+.
T Consensus 344 ~~ 345 (425)
T COG0823 344 SS 345 (425)
T ss_pred ec
Confidence 74
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0028 Score=70.59 Aligned_cols=206 Identities=13% Similarity=0.145 Sum_probs=122.4
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC--------CceEEEEEcCCCCeeEEEEe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP--------GIMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp--------g~~ll~sss~~~D~tIklWd 263 (485)
+.+.-++|+ ++|+++.+.+.+ .+.|..+..+. ...=+.++|++ +++.+.. .+++|.+.|
T Consensus 235 gnpd~v~~s-pdGk~afvTsyN-------sE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V----~gn~V~VID 302 (635)
T PRK02888 235 GNLDNVDTD-YDGKYAFSTCYN-------SEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI----GGSKVPVVD 302 (635)
T ss_pred CCcccceEC-CCCCEEEEeccC-------cccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE----CCCEEEEEE
Confidence 355678997 699988777642 22333333332 11124455553 3333332 136899999
Q ss_pred cCC----C-eEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCee------------EEecccCCCceEE
Q 011452 264 IED----G-TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL------------TEVSRTEFMTPSA 325 (485)
Q Consensus 264 i~t----G-~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~------------~~~l~gh~~~v~a 325 (485)
..+ | +.+..+.- ...-..|+++ ||+.++++++ .+.+|-+.|+++.+. ..... =...+.-
T Consensus 303 ~~t~~~~~~~v~~yIPV-GKsPHGV~vS-PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve-vGlGPLH 379 (635)
T PRK02888 303 GRKAANAGSALTRYVPV-PKNPHGVNTS-PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE-LGLGPLH 379 (635)
T ss_pred CCccccCCcceEEEEEC-CCCccceEEC-CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec-cCCCcce
Confidence 988 4 56666652 1344588886 8899998875 899999999998552 11111 1235666
Q ss_pred EEEcCCCcEEEEEe-CCcEEEEeCCC-----------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC---
Q 011452 326 FIFLYENQLFLTFR-NRTVAVWNFRG-----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD--- 390 (485)
Q Consensus 326 vaFspdg~llaS~s-D~TIklWd~~G-----------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d--- 390 (485)
.+|.++|....|-- |..|-.||+.. ..+..+.-|...-......+=.-.|||++|+|.++=.+|=
T Consensus 380 TaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk~skdrfl~ 459 (635)
T PRK02888 380 TAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNKFSKDRFLP 459 (635)
T ss_pred EEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccccccccccC
Confidence 78999999888888 99999999742 3455555444320000011112379999999998632210
Q ss_pred --CCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 391 --PLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 391 --~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++-.-+ -.|-|| +|..+.-+..|
T Consensus 460 vgpl~pen---~qlidI-sgdkM~lv~d~ 484 (635)
T PRK02888 460 VGPLHPEN---DQLIDI-SGDKMKLVHDG 484 (635)
T ss_pred CCCCCCCc---ceeEEc-cCCeeEEEecC
Confidence 111112 345565 47666666444
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00046 Score=69.51 Aligned_cols=142 Identities=13% Similarity=0.030 Sum_probs=100.6
Q ss_pred EEeeCCCcEEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEE
Q 011452 209 TYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDF 285 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f 285 (485)
--++.|.|+|+.++..+..-+.+|-. .+.+.++||++.++++..++.+....-.|-+.-..++ +.+.-.++-+.+.|
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 34678999999999877665556533 4899999999999988877754444444444444555 34444566778898
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCee-----EEecccCCCceEEEEEcCCCcE---EEEEeCCcEEEEeCC-Cc
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFEL-----TEVSRTEFMTPSAFIFLYENQL---FLTFRNRTVAVWNFR-GE 351 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~-----~~~l~gh~~~v~avaFspdg~l---laS~sD~TIklWd~~-G~ 351 (485)
+ ..+..++++..|+++-|||+++-.. -.+-..|.+.+..+.|+|.|-+ |.|=.=+-+.|-|++ +.
T Consensus 212 s-~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~ 285 (344)
T KOG4532|consen 212 S-ENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYV 285 (344)
T ss_pred c-cCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCc
Confidence 7 4578899999999999999997432 2223468999999999987754 222225567788875 54
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=8.8e-05 Score=76.58 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=100.4
Q ss_pred EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC------CcEEEEeecCCCCCCCC
Q 011452 294 LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 294 ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~------G~ll~tl~gH~~~~~~~ 366 (485)
++.+-+..|-|-|++||-..... -...|.|.-|.--+.++.-|. +|.|-..|++ |.+.+.|- |...
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~--sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ss---- 300 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQ--SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSS---- 300 (425)
T ss_pred ecccccceeEEEEeecccccccc--cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcc----
Confidence 44467778888899987543332 344677777888788888888 9999999984 34565554 4433
Q ss_pred CeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE---EEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 367 NTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKC---LAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 367 ~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~---l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
|.++.+-. ++++|++.++ +|+|+|||+.--|| +.+.+||-+.+.
T Consensus 301 -vtslq~Lq~s~q~LmaS~M-----------~gkikLyD~R~~K~~~~V~qYeGHvN~~a-------------------- 348 (425)
T KOG2695|consen 301 -VTSLQILQFSQQKLMASDM-----------TGKIKLYDLRATKCKKSVMQYEGHVNLSA-------------------- 348 (425)
T ss_pred -hhhhhhhccccceEeeccC-----------cCceeEeeehhhhcccceeeeeccccccc--------------------
Confidence 67777766 7788887776 79999999987778 999999986322
Q ss_pred ccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+. +-..|+--.|++++.|-.-|+|.+
T Consensus 349 ---------------~l~-~~v~~eeg~I~s~GdDcytRiWsl 375 (425)
T KOG2695|consen 349 ---------------YLP-AHVKEEEGSIFSVGDDCYTRIWSL 375 (425)
T ss_pred ---------------ccc-cccccccceEEEccCeeEEEEEec
Confidence 111 334566667888999999999974
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.055 Score=57.05 Aligned_cols=231 Identities=17% Similarity=0.173 Sum_probs=147.6
Q ss_pred CceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEEEEc-C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 194 WPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS-D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 194 ~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~tl~-~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
++..|... ++| +..+.-+...++.+-+.....-..+.. + ..-+.++++| +.+..+... .+..|.+.|.++-++
T Consensus 32 ~~~~v~~~-~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~--~~~~v~vid~~~~~~ 108 (381)
T COG3391 32 GPGGVAVN-PDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTG--DSNTVSVIDTATNTV 108 (381)
T ss_pred CCceeEEc-CccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecC--CCCeEEEEcCcccce
Confidence 55577776 566 444443333355555543111111111 1 2345788886 444544432 247999999888888
Q ss_pred EEEee-cCCcceeEEEEEecCCCEEEEEe---CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcE
Q 011452 270 LKSFN-HLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTV 343 (485)
Q Consensus 270 L~tl~-~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TI 343 (485)
+.+.. +. .-..++|. ++++++.++. .++++.+.|-.+++.+++...-. .+..++|.|+|+.+.... +++|
T Consensus 109 ~~~~~vG~--~P~~~~~~-~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P~~~a~~p~g~~vyv~~~~~~~v 184 (381)
T COG3391 109 LGSIPVGL--GPVGLAVD-PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TPTGVAVDPDGNKVYVTNSDDNTV 184 (381)
T ss_pred eeEeeecc--CCceEEEC-CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-CcceEEECCCCCeEEEEecCCCeE
Confidence 87776 32 33477775 6787888763 37999999999998887743322 448899999999655554 9999
Q ss_pred EEEeCCCcEEEE------eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 344 AVWNFRGELVTS------FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 344 klWd~~G~ll~t------l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.+-|.++.-+.. ..-+.. =..++++|||+++..... .+.+++|-.-|..+++...+...-
T Consensus 185 ~vi~~~~~~v~~~~~~~~~~~~~~------P~~i~v~~~g~~~yV~~~--------~~~~~~v~~id~~~~~v~~~~~~~ 250 (381)
T COG3391 185 SVIDTSGNSVVRGSVGSLVGVGTG------PAGIAVDPDGNRVYVAND--------GSGSNNVLKIDTATGNVTATDLPV 250 (381)
T ss_pred EEEeCCCcceeccccccccccCCC------CceEEECCCCCEEEEEec--------cCCCceEEEEeCCCceEEEecccc
Confidence 999987554442 222221 257999999998877764 122478888898888877662221
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC-CcEEE
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH-GLVHV 482 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D-gtVkl 482 (485)
.. + .-..++++|+|+.++..... ++|.+
T Consensus 251 ~~------------------------------------~-~~~~v~~~p~g~~~yv~~~~~~~V~v 279 (381)
T COG3391 251 GS------------------------------------G-APRGVAVDPAGKAAYVANSQGGTVSV 279 (381)
T ss_pred cc------------------------------------C-CCCceeECCCCCEEEEEecCCCeEEE
Confidence 10 0 23458999999999988543 45443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.041 Score=57.52 Aligned_cols=266 Identities=12% Similarity=0.163 Sum_probs=154.8
Q ss_pred CcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CCCcEEEeecCCCeEEEEE
Q 011452 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 162 ~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D~tiKlWdl~~g~~l~tl 231 (485)
|-++. ..+.+-|-..|++ ...-..+....+..+ |||+.+..++ ..-.|-+||.+|-+....+
T Consensus 12 ~~~~~-~rv~viD~d~~k~------lGmi~~g~~~~~~~s-pdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI 83 (342)
T PF06433_consen 12 FFHMT-SRVYVIDADSGKL------LGMIDTGFLGNVALS-PDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI 83 (342)
T ss_dssp GGGSS-EEEEEEETTTTEE------EEEEEEESSEEEEE--TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE
T ss_pred ccccc-ceEEEEECCCCcE------EEEeecccCCceeEC-CCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE
Confidence 45565 3577777666665 232222333456777 7999988764 2457999999998876644
Q ss_pred --cCC-c------EEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCc
Q 011452 232 --SDK-N------VQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENEN 301 (485)
Q Consensus 232 --~~~-~------V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~t 301 (485)
+.. . .+..++|+ |..+++..- .--..|-|-|++.++.+..+.- ...+-|. |..+..+.+-+.||+
T Consensus 84 ~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~-TPa~SVtVVDl~~~kvv~ei~~--PGC~~iy--P~~~~~F~~lC~DGs 158 (342)
T PF06433_consen 84 EIPPKPRAQVVPYKNMFALSADGKFLYVQNF-TPATSVTVVDLAAKKVVGEIDT--PGCWLIY--PSGNRGFSMLCGDGS 158 (342)
T ss_dssp EETTS-B--BS--GGGEEE-TTSSEEEEEEE-SSSEEEEEEETTTTEEEEEEEG--TSEEEEE--EEETTEEEEEETTSC
T ss_pred ecCCcchheecccccceEEccCCcEEEEEcc-CCCCeEEEEECCCCceeeeecC--CCEEEEE--ecCCCceEEEecCCc
Confidence 432 2 23478896 445555433 3347899999999999998862 2333332 222456667789999
Q ss_pred EEEEECC-CCeeEEecc----cCCCce-EEEEEcCC-CcEEEEEeCCcEEEEeCCCcEE---EEee------cCCCCCCC
Q 011452 302 LQILDVR-NFELTEVSR----TEFMTP-SAFIFLYE-NQLFLTFRNRTVAVWNFRGELV---TSFE------DHLLWHPD 365 (485)
Q Consensus 302 IkIWDv~-tg~~~~~l~----gh~~~v-~avaFspd-g~llaS~sD~TIklWd~~G~ll---~tl~------gH~~~~~~ 365 (485)
+.-..+. .|+..+... ...+.+ ..-+++.. ++++-.+-+|.|.-=|+.|+-. ..++ .-..|-|.
T Consensus 159 l~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPG 238 (342)
T PF06433_consen 159 LLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPG 238 (342)
T ss_dssp EEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-
T ss_pred eEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCc
Confidence 9988888 566543221 111111 11122222 3333332266666666654422 2221 12356555
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcC-CC--CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccc
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEG-NA--GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKH 442 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~-~D--gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (485)
+. .-+++.+..+.|..-=....+ ++ .| ..|-++|+.|+|.++.|.--.
T Consensus 239 G~-Q~~A~~~~~~rlyvLMh~g~~----gsHKdpgteVWv~D~~t~krv~Ri~l~~------------------------ 289 (342)
T PF06433_consen 239 GW-QLIAYHAASGRLYVLMHQGGE----GSHKDPGTEVWVYDLKTHKRVARIPLEH------------------------ 289 (342)
T ss_dssp SS-S-EEEETTTTEEEEEEEE--T----T-TTS-EEEEEEEETTTTEEEEEEEEEE------------------------
T ss_pred ce-eeeeeccccCeEEEEecCCCC----CCccCCceEEEEEECCCCeEEEEEeCCC------------------------
Confidence 53 568888876666543221000 00 11 247888999999999997421
Q ss_pred ccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEcc
Q 011452 443 SHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 443 ~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd 484 (485)
.+.+|+.+.|.+ .|+..+ .++++.++|
T Consensus 290 ---------------~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 290 ---------------PIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp ---------------EESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred ---------------ccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 677899999988 676655 589999987
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.013 Score=63.42 Aligned_cols=214 Identities=14% Similarity=0.155 Sum_probs=117.4
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
.|..+.++ |+|+.++-++ |+.|-|......+..... .-.+.+|++.+.+|+-.+ ..+|+|..--+.+..+++
T Consensus 34 ~p~~ls~n-pngr~v~V~g-~geY~iyt~~~~r~k~~G---~g~~~vw~~~n~yAv~~~---~~~I~I~kn~~~~~~k~i 105 (443)
T PF04053_consen 34 YPQSLSHN-PNGRFVLVCG-DGEYEIYTALAWRNKAFG---SGLSFVWSSRNRYAVLES---SSTIKIYKNFKNEVVKSI 105 (443)
T ss_dssp --SEEEE--TTSSEEEEEE-TTEEEEEETTTTEEEEEE---E-SEEEE-TSSEEEEE-T---TS-EEEEETTEE-TT---
T ss_pred CCeeEEEC-CCCCEEEEEc-CCEEEEEEccCCcccccC---ceeEEEEecCccEEEEEC---CCeEEEEEcCccccceEE
Confidence 46789997 7999988855 888888874443332222 234578888888887743 368888532222222344
Q ss_pred ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCc--
Q 011452 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGE-- 351 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~-- 351 (485)
+-. ..+..+- ++.||.-..++.|.+||+++++.+....-. .|..|.|+++|+++|=.++.+|-|.+.+-+
T Consensus 106 ~~~-~~~~~If-----~G~LL~~~~~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~ 177 (443)
T PF04053_consen 106 KLP-FSVEKIF-----GGNLLGVKSSDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSIYILKYNLEAV 177 (443)
T ss_dssp --S-S-EEEEE------SSSEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHH
T ss_pred cCC-cccceEE-----cCcEEEEECCCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeEEEEEecchhc
Confidence 310 1223332 255555444559999999999999888522 379999999999999999889999998744
Q ss_pred ----------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 352 ----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 352 ----------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
.+..+..-... |.+.+|--| ++-++. .+-||- +..|+. .+|. |-+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~-----IkSg~W~~d---~fiYtT-----------~~~lkY--l~~Ge~-~~i~-~ld-- 232 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISER-----IKSGCWVED---CFIYTT-----------SNHLKY--LVNGET-GIIA-HLD-- 232 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S-------SEEEEETT---EEEEE------------TTEEEE--EETTEE-EEEE-E-S--
T ss_pred ccccccCchhceEEEEEecce-----eEEEEEEcC---EEEEEc-----------CCeEEE--EEcCCc-ceEE-EcC--
Confidence 44444331112 777777655 333443 245665 333443 2221 211
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..++=+.+.|+.+.|+...+|+.|...
T Consensus 233 -----------------------------------~~~yllgy~~~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 233 -----------------------------------KPLYLLGYLPKENRLYLIDRDGNVISY 259 (443)
T ss_dssp -----------------------------------S--EEEEEETTTTEEEEE-TT--EEEE
T ss_pred -----------------------------------CceEEEEEEccCCEEEEEECCCCEEEE
Confidence 267778999988999999999988765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0004 Score=73.87 Aligned_cols=217 Identities=15% Similarity=0.147 Sum_probs=131.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC-CcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG-KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
|.+.|.-|+-+. -+.+++||.|| ..+.|-- .+ .-..-.+-|. .++.-+.+++-+ .+|-++.|.+.
T Consensus 8 hrd~i~hv~~tk-a~fiiqASlDG----------h~KFWkK-s~isGvEfVKhFr-aHL~~I~sl~~S-~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVFPTK-AKFIIQASLDG----------HKKFWKK-SRISGVEFVKHFR-AHLGVILSLAVS-YDGWLFRSVED 73 (558)
T ss_pred ccceeeeEeeeh-hheEEeeecch----------hhhhcCC-CCccceeehhhhH-HHHHHHHhhhcc-ccceeEeeccC
Confidence 666777777766 56899999765 4556652 22 1100011122 234434455555 68999999777
Q ss_pred -CCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE
Q 011452 214 -DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK 292 (485)
Q Consensus 214 -D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ 292 (485)
|..+|++|+.+..++.-+ |+-++..-.+..+-+| ..+. .
T Consensus 74 ~Dhs~KvfDvEn~Dminmi----------------------------KL~~lPg~a~wv~skG--d~~s----------~ 113 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMI----------------------------KLVDLPGFAEWVTSKG--DKIS----------L 113 (558)
T ss_pred cccceeEEEeeccchhhhc----------------------------ccccCCCceEEecCCC--Ceee----------e
Confidence 999999999876653222 1111111011111110 0011 2
Q ss_pred EEEEe-CCCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc-------EEEEeecCCC
Q 011452 293 LLVKQ-ENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE-------LVTSFEDHLL 361 (485)
Q Consensus 293 lls~s-~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~-------ll~tl~gH~~ 361 (485)
++++. +++-|-+.|-....| ...-.-|+.+|...-.+|-+..++|.. .|.|+-|..+|. +...+. |..
T Consensus 114 IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K-~eT 192 (558)
T KOG0882|consen 114 IAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELK-HET 192 (558)
T ss_pred EEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccccc-ccc
Confidence 22222 566777777664443 222234888999999999999999988 999999998762 111111 110
Q ss_pred C---CC--CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 362 W---HP--DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 362 ~---~~--~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
. -+ -..-.++.|+|+|..|..-+. |.+|++.++.||+.++.|..-
T Consensus 193 dLy~f~K~Kt~pts~Efsp~g~qistl~~-----------DrkVR~F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 193 DLYGFPKAKTEPTSFEFSPDGAQISTLNP-----------DRKVRGFVFKTGKLVQEIDEV 242 (558)
T ss_pred hhhcccccccCccceEEccccCcccccCc-----------ccEEEEEEeccchhhhhhhcc
Confidence 0 00 012468999999999998764 799999999999999988653
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.17 Score=57.55 Aligned_cols=243 Identities=11% Similarity=0.133 Sum_probs=136.3
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc-eEEEEeCCCCeEEEEeeCC-
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP-GFVEFDDVNGKVLTYSAQD- 214 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~-~~V~Fs~pnG~~Las~s~D- 214 (485)
-.+..+.+||||+.||.+...++++ -.++.+-++.+|+.. -. .+.++ ..++|. +||+.|.+...|
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E-----~~~l~v~d~~tg~~l-----~~--~i~~~~~~~~w~-~D~~~~~y~~~~~ 193 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRR-----QYGIRFRNLETGNWY-----PE--LLDNVEPSFVWA-NDSWTFYYVRKHP 193 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcE-----EEEEEEEECCCCCCC-----Cc--cccCcceEEEEe-eCCCEEEEEEecC
Confidence 3577788999999887754332222 256667777788731 11 11122 368997 688888887653
Q ss_pred -----CcEEEeecCCC--e--EEEEEcCCcEE-EEEEc-CCceEEEEEcCCCCeeEEEEec--CCCeEEEEeecCCccee
Q 011452 215 -----SIYKVFDLKNY--T--MLYSISDKNVQ-EIKIS-PGIMLLIFTKASGHVPLKILSI--EDGTVLKSFNHLLHRNK 281 (485)
Q Consensus 215 -----~tiKlWdl~~g--~--~l~tl~~~~V~-~VafS-pg~~ll~sss~~~D~tIklWdi--~tG~~L~tl~~~~~~~~ 281 (485)
..|.++++.++ + +++.-.+.... .+..+ ++..+++.+....+..+.+++. .+|+....+..-.+...
T Consensus 194 ~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 273 (686)
T PRK10115 194 VTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY 273 (686)
T ss_pred CCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE
Confidence 35677788887 2 45554333333 44455 6666666666666678999984 35553222221111111
Q ss_pred EEEEEecCCCEEEEEe--CCCcEEEE--ECC-CCeeEEecccCC-CceEEEEEcCCCcEEEEEe-CCcEEEEeC--CCcE
Q 011452 282 KVDFIEQFNEKLLVKQ--ENENLQIL--DVR-NFELTEVSRTEF-MTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGEL 352 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s--~D~tIkIW--Dv~-tg~~~~~l~gh~-~~v~avaFspdg~llaS~s-D~TIklWd~--~G~l 352 (485)
.+. ..++.+.... ...+-+|. ++. .++...++.... ..+..+.+. .+.++++.. ++.-+|+-+ .+..
T Consensus 274 --~~~-~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~ 349 (686)
T PRK10115 274 --SLD-HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTRE 349 (686)
T ss_pred --EEE-eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCc
Confidence 222 2245555543 22445555 454 333333333323 367888777 556777777 776666654 4555
Q ss_pred EEEee-cCCCCCCCCCeeEEEEC--CC-CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 353 VTSFE-DHLLWHPDCNTNNIYIT--SD-QDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 353 l~tl~-gH~~~~~~~~v~svafS--pD-G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+..+. +.... +..+.++ ++ +.++++.+. ...-++|-.+|+.+++
T Consensus 350 ~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~ss--------~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 350 VIGIAFDDPAY-----VTWIAYNPEPETSRLRYGYSS--------MTTPDTLFELDMDTGE 397 (686)
T ss_pred eEEecCCCCce-----EeeecccCCCCCceEEEEEec--------CCCCCEEEEEECCCCc
Confidence 55554 22111 3334455 44 456666664 2235789999998875
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.041 Score=58.39 Aligned_cols=264 Identities=14% Similarity=0.167 Sum_probs=121.8
Q ss_pred cCEEEEEeCCCeEEee--ecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc
Q 011452 105 RDIVFALAQSGVCAAF--CRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW--~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~ 182 (485)
..+|+++..||.-.|| |+++|+..+ |.-+........+.+|+++.|+-+. ++ +++.--++.+++.
T Consensus 48 ~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~----~~------~~l~~vdL~T~e~-- 114 (386)
T PF14583_consen 48 RKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVK----NG------RSLRRVDLDTLEE-- 114 (386)
T ss_dssp -EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEE----TT------TEEEEEETTT--E--
T ss_pred CEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEE----CC------CeEEEEECCcCcE--
Confidence 4778888878776665 577666554 6554433334678888888876543 11 2333334455443
Q ss_pred ccceeeeccccCceEEEEe-CCCCeEEEEee----------------------CCCcEEEeecCCCeEEEEEc-CCcEEE
Q 011452 183 GFALFESESLKWPGFVEFD-DVNGKVLTYSA----------------------QDSIYKVFDLKNYTMLYSIS-DKNVQE 238 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs-~pnG~~Las~s----------------------~D~tiKlWdl~~g~~l~tl~-~~~V~~ 238 (485)
..+++- .-.|.+...+. +.|+..++-.- -.+.|.-=|+++|+.--.+. ..++.-
T Consensus 115 -~~vy~~-p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 115 -RVVYEV-PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp -EEEEE---TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred -EEEEEC-CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 234443 22344433442 24566655431 13344445788877544444 468889
Q ss_pred EEEcC-CceEEEEEcC-CCCe-eEEEEecC-CCeEEEEeecCCcc-eeEEEEEecCCCEEEE-E----eCCCcEEEEECC
Q 011452 239 IKISP-GIMLLIFTKA-SGHV-PLKILSIE-DGTVLKSFNHLLHR-NKKVDFIEQFNEKLLV-K----QENENLQILDVR 308 (485)
Q Consensus 239 VafSp-g~~ll~sss~-~~D~-tIklWdi~-tG~~L~tl~~~~~~-~~~V~f~~~~~~~lls-~----s~D~tIkIWDv~ 308 (485)
+-||| +-.++.++-. ..|. +-|||=+. +|.-.+.+..+... +-.=.|-.+||.+|.- + +.+..|.=.|+.
T Consensus 193 ~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp EEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred cccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99997 6566666443 3332 34778443 56666666433221 1122233477877765 2 356788888999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC----------------cEEEEeCCCcEEEEeecCCC-CC-----CC
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR----------------TVAVWNFRGELVTSFEDHLL-WH-----PD 365 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~----------------TIklWd~~G~ll~tl~gH~~-~~-----~~ 365 (485)
|++...... ..+.+=+.-++||+||+--+ |. -|.|++++.+-...|.-|.. |. ..
T Consensus 273 t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q 350 (386)
T PF14583_consen 273 TGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQ 350 (386)
T ss_dssp T--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSS
T ss_pred CCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCc
Confidence 987654432 22334455689999998655 53 45567776333333443421 10 00
Q ss_pred CCeeEEEECCCCCEEEEEec
Q 011452 366 CNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~ 385 (485)
..-..+.|||||++|+=.|.
T Consensus 351 ~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 351 VTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp TT----EE-TTSSEEEEEE-
T ss_pred cCCCCCccCCCCCEEEEECC
Confidence 01245889999999998875
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00031 Score=44.97 Aligned_cols=38 Identities=13% Similarity=0.243 Sum_probs=34.2
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
++++..+..|...|.++.|.|+++++++++ |++|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 566777788999999999999999999999 99999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0044 Score=67.58 Aligned_cols=179 Identities=15% Similarity=0.203 Sum_probs=120.2
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCC---------CeeEEEEecCCC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG---------HVPLKILSIEDG 267 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~---------D~tIklWdi~tG 267 (485)
.|.|| |-|.+|+|=-+-| |-+|-=++...++.+..-.|+-|.|||.-.+|++-+... -..+.||||.||
T Consensus 215 yv~wS-P~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG 292 (698)
T KOG2314|consen 215 YVRWS-PKGTYLVTFHKQG-IALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG 292 (698)
T ss_pred eEEec-CCceEEEEEeccc-eeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc
Confidence 68998 7999999876544 679976666677777667899999999665555433311 157999999999
Q ss_pred eEEEEeec--CCcceeE-EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe---C-
Q 011452 268 TVLKSFNH--LLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR---N- 340 (485)
Q Consensus 268 ~~L~tl~~--~~~~~~~-V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s---D- 340 (485)
.+.++|.- ..-.++. +.|+ . +++.++-=.-.+|-|++..+-.++.--.-.-..|..|.|+|.+++||-=. +
T Consensus 293 ~lkrsF~~~~~~~~~WP~frWS-~-DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~ 370 (698)
T KOG2314|consen 293 LLKRSFPVIKSPYLKWPIFRWS-H-DDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNN 370 (698)
T ss_pred chhcceeccCCCccccceEEec-c-CCceeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccC
Confidence 99999974 1222332 3343 3 45555543337899998877554432212234677889999999998543 2
Q ss_pred --CcEEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 341 --RTVAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 341 --~TIklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
-++-|-.+ .++.+++-.=|... +| .+.+-.+|++|+-.-
T Consensus 371 ~parvtL~evPs~~~iRt~nlfnVs--Dc---kLhWQk~gdyLcvkv 412 (698)
T KOG2314|consen 371 IPARVTLMEVPSKREIRTKNLFNVS--DC---KLHWQKSGDYLCVKV 412 (698)
T ss_pred CcceEEEEecCccceeeeccceeee--cc---EEEeccCCcEEEEEE
Confidence 25666676 46666665544422 33 378888999998764
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00043 Score=76.90 Aligned_cols=150 Identities=12% Similarity=0.151 Sum_probs=104.0
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCe---------------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFE---------------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~---------------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
.++|. -..++++.++.||-+|+..+.+.. .-+++.||...|.-+.|..+.|.|-|+. +|-|-+
T Consensus 19 c~~WN-ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 19 CAEWN-KESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEc-ccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 44553 335789999999999999876531 2467899999999999999999999888 999999
Q ss_pred EeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCc
Q 011452 346 WNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAEN 424 (485)
Q Consensus 346 Wd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~ 424 (485)
|-+ .|.-...+...... .+|.++.++.||+.|+..-.|- .-+.++-||. |||. |. |+|.
T Consensus 98 WmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDG--avIVGsvdGN-RIwg----Ke---Lkg~------- 157 (1189)
T KOG2041|consen 98 WMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDG--AVIVGSVDGN-RIWG----KE---LKGQ------- 157 (1189)
T ss_pred EeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccC--CEEEEeeccc-eecc----hh---cchh-------
Confidence 998 46533333322221 3489999999999998887610 0111122222 5563 22 2332
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-...|.+|||.+.+.-+=..|.++|.||
T Consensus 158 ---------------------------------~l~hv~ws~D~~~~Lf~~ange~hlydn 185 (1189)
T KOG2041|consen 158 ---------------------------------LLAHVLWSEDLEQALFKKANGETHLYDN 185 (1189)
T ss_pred ---------------------------------eccceeecccHHHHHhhhcCCcEEEecc
Confidence 1224788999888888888888888875
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.22 Score=50.63 Aligned_cols=109 Identities=16% Similarity=0.154 Sum_probs=68.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
..+++.+|+++.++.-|.++|+.+=.-. -...|.+-+.= =|+.++.+- .. ..+.+-+..+|...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v-vgdfVV~GC----y~------g~lYfl~~~tGs~~--- 86 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV-VGDFVVLGC----YS------GGLYFLCVKTGSQI--- 86 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE-ECCEEEEEE----cc------CcEEEEEecchhhe---
Confidence 6889999999999999999999764211 11234433332 244444322 11 22333344777441
Q ss_pred ceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 185 ALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 185 ~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
--|.. +..+-...++ ++|.++-.++.|++...-|.+++.++|..+
T Consensus 87 w~f~~~~~vk~~a~~d---~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 87 WNFVILETVKVRAQCD---FDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred eeeeehhhhccceEEc---CCCceEEEecCCCcEEEecccccceEEecc
Confidence 12333 2333222344 468899999999999999999999999976
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.19 Score=49.40 Aligned_cols=195 Identities=17% Similarity=0.267 Sum_probs=121.5
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE---------------EEc-CCcEEEEEEc---CCceEEEEEcCCC
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY---------------SIS-DKNVQEIKIS---PGIMLLIFTKASG 255 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~---------------tl~-~~~V~~VafS---pg~~ll~sss~~~ 255 (485)
+..++.-+.-+.+|+- + |+++.++++.+-.... .+. ...|..++.. .+...++.+..
T Consensus 38 I~ql~vl~~~~~llvL-s-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k-- 113 (275)
T PF00780_consen 38 ITQLSVLPELNLLLVL-S-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK-- 113 (275)
T ss_pred EEEEEEecccCEEEEE-c-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC--
Confidence 5566665333444443 3 6999999988655433 222 2466666622 24444444333
Q ss_pred CeeEEEEecCCC-----eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC----------
Q 011452 256 HVPLKILSIEDG-----TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF---------- 320 (485)
Q Consensus 256 D~tIklWdi~tG-----~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~---------- 320 (485)
++|.|+..... +.++.+.- ......++|. +..++++.. ....+.|+.++.....+....
T Consensus 114 -k~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~---~~~i~v~~~-~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~ 187 (275)
T PF00780_consen 114 -KKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFL---GNKICVGTS-KGFYLIDLNTGSPSELLDPSDSSSSFKSRNS 187 (275)
T ss_pred -CEEEEEEEECCcccccceeEEEEc-CCCcEEEEEe---CCEEEEEeC-CceEEEecCCCCceEEeCccCCcchhhhccc
Confidence 48888877553 46666653 3567788886 567777764 448999999888766653221
Q ss_pred -CceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 321 -MTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 321 -~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
..+..+.-.+++.+|+.. |..--.=|.+|+..+ .....|... ..++++.. .||+..+ ++.
T Consensus 188 ~~~~~~~~~~~~~e~Ll~~-~~~g~fv~~~G~~~r--~~~i~W~~~--p~~~~~~~--pyli~~~------------~~~ 248 (275)
T PF00780_consen 188 SSKPLGIFQLSDNEFLLCY-DNIGVFVNKNGEPSR--KSTIQWSSA--PQSVAYSS--PYLIAFS------------SNS 248 (275)
T ss_pred CCCceEEEEeCCceEEEEe-cceEEEEcCCCCcCc--ccEEEcCCc--hhEEEEEC--CEEEEEC------------CCE
Confidence 123333334556777654 444446677888666 444456332 45666643 4777765 477
Q ss_pred EEEEeCCCCeEEEEecCCC
Q 011452 400 INISNILTGKCLAKIRASN 418 (485)
Q Consensus 400 IklWdl~TGk~l~tl~gH~ 418 (485)
|.||++.+|++++++..+.
T Consensus 249 iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 249 IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEEEECcCCcEEEEEECCC
Confidence 9999999999999998764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.018 Score=64.58 Aligned_cols=347 Identities=12% Similarity=0.076 Sum_probs=197.2
Q ss_pred cCEEEEEeCCCeEEeeecccCcE---------------EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 105 RDIVFALAQSGVCAAFCRETNQR---------------ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~---------------l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
..+||.++.||..|+-.+.|... =.||.| |+..|+-|.||.++|.|-| | ..+ +-
T Consensus 26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeG-H~~sV~vvTWNe~~QKLTt-S---Dt~------Gl 94 (1189)
T KOG2041|consen 26 SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEG-HNASVMVVTWNENNQKLTT-S---DTS------GL 94 (1189)
T ss_pred CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhcc-CcceEEEEEeccccccccc-c---CCC------ce
Confidence 78999999999999998875221 125666 8899999999999999865 2 123 57
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-EEEEcCCcEEEEEEcCCceEE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSISDKNVQEIKISPGIMLL 248 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l~tl~~~~V~~VafSpg~~ll 248 (485)
|-+|-+-.|..-.- ........-+.+.++. .||+.+.-.=.||.|-|=.++.... -..+++....-|.+|||..++
T Consensus 95 IiVWmlykgsW~EE--MiNnRnKSvV~SmsWn-~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 95 IIVWMLYKGSWCEE--MINNRNKSVVVSMSWN-LDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred EEEEeeecccHHHH--HhhCcCccEEEEEEEc-CCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 88998877765110 0000000112356665 5777777666677765554432211 022333334457788766655
Q ss_pred EEEcCCCCeeEEEEecCCC-------eEEEEeec----CCccee-------EEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 249 IFTKASGHVPLKILSIEDG-------TVLKSFNH----LLHRNK-------KVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG-------~~L~tl~~----~~~~~~-------~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
...-+. +.+.|.|-+.. .|+-+.+| ..+.+. .+..++|+--.|++.-++|.++|---.+.
T Consensus 172 Lf~~an--ge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND 249 (1189)
T KOG2041|consen 172 LFKKAN--GETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND 249 (1189)
T ss_pred HhhhcC--CcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC
Confidence 443333 56666664321 12111111 011122 23334566678888989999998754443
Q ss_pred -eeEEecccCCCceEEEEEcCCCcEEEEEe-CC---------cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 311 -ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR---------TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 311 -~~~~~l~gh~~~v~avaFspdg~llaS~s-D~---------TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
++.-+-.| +.+...-|+|+|..||.++ |. .|..+..-|+.+.+|.-...- |.++.+-..|-.
T Consensus 250 ~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~-----It~lsWEg~gLr 322 (1189)
T KOG2041|consen 250 PEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSC-----ITGLSWEGTGLR 322 (1189)
T ss_pred CCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCce-----eeeeEEcCCceE
Confidence 33333333 6788888999999999887 42 455665558888888754322 777777777766
Q ss_pred EEEEecCCC---C---C--------------CCCcCCCCeEEEEeCCCCe-EEEEe---------cCCC--------CCC
Q 011452 380 IISYCKADS---D---D--------------PLAEGNAGSINISNILTGK-CLAKI---------RASN--------GLP 421 (485)
Q Consensus 380 LaS~s~d~~---~---d--------------~~~~~~DgtIklWdl~TGk-~l~tl---------~gH~--------~~~ 421 (485)
||-+-.+-. + + +..+.----|-.||..|.+ -+++. ..|- +++
T Consensus 323 iA~AvdsfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i 402 (1189)
T KOG2041|consen 323 IAIAVDSFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVI 402 (1189)
T ss_pred EEEEecceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCC
Confidence 666542000 0 0 1111112347789887754 22222 2221 111
Q ss_pred C-C-cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 422 A-E-NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 422 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
+ + ..-.+++-+.+.+||+--. ++.+..-+|.-.+.--+|..++-+|.+.. -+|
T Consensus 403 ~e~s~le~~~~~~~l~LCNSIGT--------~lD~kytdirP~Fv~vn~~~vviAS~e~~-~iW 457 (1189)
T KOG2041|consen 403 PEYSTLENRSRVYFLQLCNSIGT--------SLDYKYTDIRPKFVCVNGICVVIASEERY-FIW 457 (1189)
T ss_pred cchhhhhcccceEEEeeecccCC--------cCCCCcceeeeeEEEecceEEEEeccccE-EEE
Confidence 0 0 1112233346778876543 23333346666677777888888887764 366
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.2 Score=52.56 Aligned_cols=205 Identities=14% Similarity=0.124 Sum_probs=110.6
Q ss_pred EEEEeCCCCeEEEEe-----eCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEEcCCC---------CeeEEE
Q 011452 197 FVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYS-ISDKNVQEIKISPGIMLLIFTKASG---------HVPLKI 261 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~-----s~D~tiKlWdl~~g~~l~t-l~~~~V~~VafSpg~~ll~sss~~~---------D~tIkl 261 (485)
..++| |||++||.+ +...++++.|+++|+.+-. +....-..+.|++++..+.+..-+. ...|++
T Consensus 128 ~~~~S-pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~ 206 (414)
T PF02897_consen 128 GFSVS-PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR 206 (414)
T ss_dssp EEEET-TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred eeeEC-CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence 56787 899999976 2336799999999987643 3322222399998755544444333 456888
Q ss_pred EecCCCeE--EEEeecCCcce--eEEEEEecCCCEEEEEe---CC-CcEEEEECCCC----eeEEecccCCCceEEEEEc
Q 011452 262 LSIEDGTV--LKSFNHLLHRN--KKVDFIEQFNEKLLVKQ---EN-ENLQILDVRNF----ELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 262 Wdi~tG~~--L~tl~~~~~~~--~~V~f~~~~~~~lls~s---~D-~tIkIWDv~tg----~~~~~l~gh~~~v~avaFs 329 (485)
|.+.++.. .-.|....+.. ..+..+ .++..|++.+ .+ ..+.+-|+.++ ...+.+..+...+...+-.
T Consensus 207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s-~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~ 285 (414)
T PF02897_consen 207 HKLGTPQSEDELVFEEPDEPFWFVSVSRS-KDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDH 285 (414)
T ss_dssp EETTS-GGG-EEEEC-TTCTTSEEEEEE--TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEE
T ss_pred EECCCChHhCeeEEeecCCCcEEEEEEec-CcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEc
Confidence 88877643 23344332333 356654 6788877643 34 55888899875 2233333344455555544
Q ss_pred CCCcEEEEEe----CCcEEEEeCC-Cc---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 330 YENQLFLTFR----NRTVAVWNFR-GE---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 330 pdg~llaS~s----D~TIklWd~~-G~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
.++.+++... ++.|---++. .. -...+-.|... ..+..+....+ .++++.-. + -...|+
T Consensus 286 ~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~---~~l~~~~~~~~-~Lvl~~~~----~-----~~~~l~ 352 (414)
T PF02897_consen 286 HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED---VSLEDVSLFKD-YLVLSYRE----N-----GSSRLR 352 (414)
T ss_dssp ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS---EEEEEEEEETT-EEEEEEEE----T-----TEEEEE
T ss_pred cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCc---eeEEEEEEECC-EEEEEEEE----C-----CccEEE
Confidence 5666665543 3344444553 32 22244444321 12445544322 34444443 1 124689
Q ss_pred EEeCCCCeEEEEecC
Q 011452 402 ISNILTGKCLAKIRA 416 (485)
Q Consensus 402 lWdl~TGk~l~tl~g 416 (485)
++|+..++....+..
T Consensus 353 v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 353 VYDLDDGKESREIPL 367 (414)
T ss_dssp EEETT-TEEEEEEES
T ss_pred EEECCCCcEEeeecC
Confidence 999875666666554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.22 Score=54.16 Aligned_cols=226 Identities=13% Similarity=0.123 Sum_probs=128.2
Q ss_pred cCEEEEEe---------CCCeEEeeecccCcEEEEeecCCc-------------------ccEE-EEEEeeCCCEEEEEE
Q 011452 105 RDIVFALA---------QSGVCAAFCRETNQRICFLNVTAD-------------------EVIR-SLFYNKNNDSLITVS 155 (485)
Q Consensus 105 ~~~ias~s---------~dgtiklW~~~tG~~l~tl~g~~~-------------------~~i~-sv~~spdg~~Las~S 155 (485)
+++++.++ .+|.+...|.+||+.+=.....+. ..|+ +.++.+.+.+++.++
T Consensus 156 ~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~ 235 (488)
T cd00216 156 KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGT 235 (488)
T ss_pred CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEEC
Confidence 56666665 368899999999998765543211 1122 456666677777765
Q ss_pred eecCCCC--------cccceeEEEEeEeccCCcCcccceeeecccc---Cc----eEEEEe---CCCCe---EEEEeeCC
Q 011452 156 VYASDNF--------SSLRCRSTRIEYIRRGKPDAGFALFESESLK---WP----GFVEFD---DVNGK---VLTYSAQD 214 (485)
Q Consensus 156 ~d~~~d~--------stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~---~~----~~V~Fs---~pnG~---~Las~s~D 214 (485)
.++.-+. ..+....+--.|+.+|+. +|+..... |. ....+. +.+|. ++..++.+
T Consensus 236 ~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~-----~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~ 310 (488)
T cd00216 236 GNGSPWNWGGRRTPGDNLYTDSIVALDADTGKV-----KWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKN 310 (488)
T ss_pred CCCCCCccCCccCCCCCCceeeEEEEcCCCCCE-----EEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCC
Confidence 4331110 011112444456677876 56542111 10 011111 12454 56667789
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEc--------------CCCCeeEEEEecCCCeEEEEeecCCc--
Q 011452 215 SIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK--------------ASGHVPLKILSIEDGTVLKSFNHLLH-- 278 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss--------------~~~D~tIklWdi~tG~~L~tl~~~~~-- 278 (485)
+.+...|+++|+.+...... ...++.+|+...+.+.. ...++.|--.|+.+|+.+-+.....+
T Consensus 311 G~l~ald~~tG~~~W~~~~~-~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~ 389 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV-EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRD 389 (488)
T ss_pred ceEEEEECCCCcEeeEeEee-ccccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCcccc
Confidence 99999999999988765321 12344555333221100 11246777889999999987763211
Q ss_pred ------ce--eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEe
Q 011452 279 ------RN--KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 279 ------~~--~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~s 339 (485)
.. ..+. ..++.+.+++.|+.|..+|.+||+.+-..+- ......-++|..+|++.+..-
T Consensus 390 ~~~~g~~~~~~~~~---~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~ 456 (488)
T cd00216 390 SWNIGFPHWGGSLA---TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVM 456 (488)
T ss_pred ccccCCcccCcceE---ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEE
Confidence 11 1222 2367888888999999999999998766532 222233345566777766544
|
The alignment model contains an 8-bladed beta-propeller. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.18 Score=52.10 Aligned_cols=189 Identities=12% Similarity=0.099 Sum_probs=111.1
Q ss_pred EEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee----cCC-cce
Q 011452 207 VLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN----HLL-HRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~----~~~-~~~ 280 (485)
++-+.-..+.|.-||..+|+ ..+...+..-....+.+++.|+++. .-+.+++.++|.....+. +.. .+-
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~-----~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ 113 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE-----HGVRLLDPDTGGKITLLAEPEDGLPLNRP 113 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc-----cccEEEeccCCceeEEeccccCCCCcCCC
Confidence 44444456777777776664 3344444444456666788887652 457788887776633332 111 111
Q ss_pred eEEEEEecCCCEEEEE-e-----C---CCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEE-e-CCcEEEEeC
Q 011452 281 KKVDFIEQFNEKLLVK-Q-----E---NENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTF-R-NRTVAVWNF 348 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~-s-----~---D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~-s-D~TIklWd~ 348 (485)
+.+... ++|...+.. + . -.+=.||=+. .+..++.+.+|....+.++||||++.|--+ + .+.|--+++
T Consensus 114 ND~~v~-pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~ 192 (307)
T COG3386 114 NDGVVD-PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDL 192 (307)
T ss_pred CceeEc-CCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEec
Confidence 233332 444433332 2 1 1222566555 677888888888899999999999766555 4 577777765
Q ss_pred C---CcEE----EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC-eEEEEeCCCCeEEEEecCC
Q 011452 349 R---GELV----TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG-SINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 ~---G~ll----~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg-tIklWdl~TGk~l~tl~gH 417 (485)
. |..- .-+.+...-- --+++.-.||.+-+++-. +| -|..|+.. |+.+..++-.
T Consensus 193 d~~~g~~~~~~~~~~~~~~~G~----PDG~~vDadG~lw~~a~~-----------~g~~v~~~~pd-G~l~~~i~lP 253 (307)
T COG3386 193 DPATGPIGGRRGFVDFDEEPGL----PDGMAVDADGNLWVAAVW-----------GGGRVVRFNPD-GKLLGEIKLP 253 (307)
T ss_pred CcccCccCCcceEEEccCCCCC----CCceEEeCCCCEEEeccc-----------CCceEEEECCC-CcEEEEEECC
Confidence 3 3211 1111111111 235777888888865443 23 89999977 9999988775
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.05 Score=58.10 Aligned_cols=51 Identities=24% Similarity=0.342 Sum_probs=40.9
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL 312 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~ 312 (485)
.|+|++. .|++|.++.--.+++-.+.|.. ++.|++-..||+++++|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~--~e~LvvV~~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTD--DEELVVVQSDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECC--CCeEEEEEcCCEEEEEeCC-Cce
Confidence 4888886 7899988764346777888853 7899998999999999997 444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0051 Score=70.21 Aligned_cols=174 Identities=15% Similarity=0.162 Sum_probs=120.6
Q ss_pred CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 289 FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 289 ~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
+++.++.|+.-+.+--.|+++.+..++.. -...-..+.-.+++.|..|. .|||-|-|.+ -+.+++|..|++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~--v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s---- 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN--VSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS---- 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee--ccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccc----
Confidence 35688888877777778999888777653 22323456678889999999 9999999996 8999999999965
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC------CCC--cccccCCCCCCCCcc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL------PAE--NECSCSGDYSSGSCN 438 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~------~~~--~~~~~~~~~~~~~~~ 438 (485)
+ ..|.-.|.+|+|++.+--. ..-.-|.-||+||+.+=+.|..|.=|-++ |.+ -.|+.+...|--.|+
T Consensus 220 -i--SDfDv~GNlLitCG~S~R~--~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 220 -I--SDFDVQGNLLITCGYSMRR--YNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -e--eeeeccCCeEEEeeccccc--ccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence 4 4566789999999863110 01123567999999887777766655542 222 223333332222222
Q ss_pred ---c--------cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 439 ---V--------KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ---~--------~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
- ..+.+. ..+.++.+|+.|+.||-|..+|-|++|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~-----------s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNG-----------SGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCC-----------CcceeEEecCCCceEEEecccCcEeeec
Confidence 0 111111 1589999999999999999999999994
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.012 Score=63.39 Aligned_cols=179 Identities=12% Similarity=0.128 Sum_probs=111.5
Q ss_pred EEEEeCCCCeEEEEee---CC-CcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 197 FVEFDDVNGKVLTYSA---QD-SIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s---~D-~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
+-+|+ |+|+.|++-+ .. ..+.++|+++++.-..+. ...-..-+|||++ +++.+...+....|-+-|+.+++ +
T Consensus 197 ~p~ws-~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-~ 274 (425)
T COG0823 197 TPAWS-PDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-L 274 (425)
T ss_pred ccccC-cCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-c
Confidence 34676 7899888874 23 458899999888555443 3344567899855 44444444444667777987766 5
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEE--ECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCc--E
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRT--V 343 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW--Dv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~T--I 343 (485)
..|+.-.+....=.|+ |+|.+++..+ ..+.-+|| |++.+...+....-.... .-.+||||++++-.+ ++. |
T Consensus 275 ~~Lt~~~gi~~~Ps~s-pdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~~~i 352 (425)
T COG0823 275 PRLTNGFGINTSPSWS-PDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQWDI 352 (425)
T ss_pred eecccCCccccCccCC-CCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCceee
Confidence 5566443444444554 8899998875 55555655 677665544332222121 445799999999877 454 5
Q ss_pred EEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 344 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-+-|.+ |.-++.|+.-.. ...-.+.|||..|+..+.
T Consensus 353 ~~~~~~~~~~~~~lt~~~~------~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 353 DKNDLASGGKIRILTSTYL------NESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEeccCCCCcEEEcccccc------CCCCCcCCCCceEEEecc
Confidence 556663 443555543221 345667899999988764
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.16 Score=50.93 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=106.2
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~La 209 (485)
.|.+-.++ +-.|+|+|+.++|+++.. ... .+ ++.=.+|++....++-. ..-+..|++- -+|++++
T Consensus 16 ~l~g~~~e-~SGLTy~pd~~tLfaV~d--~~~-------~i-~els~~G~vlr~i~l~g---~~D~EgI~y~-g~~~~vl 80 (248)
T PF06977_consen 16 PLPGILDE-LSGLTYNPDTGTLFAVQD--EPG-------EI-YELSLDGKVLRRIPLDG---FGDYEGITYL-GNGRYVL 80 (248)
T ss_dssp E-TT--S--EEEEEEETTTTEEEEEET--TTT-------EE-EEEETT--EEEEEE-SS----SSEEEEEE--STTEEEE
T ss_pred ECCCccCC-ccccEEcCCCCeEEEEEC--CCC-------EE-EEEcCCCCEEEEEeCCC---CCCceeEEEE-CCCEEEE
Confidence 34553444 999999999999998772 122 33 22225777743333211 3345679996 5788887
Q ss_pred EeeCCCcEEEeecCCCe------EEEEE----c--C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC---CeEEEE
Q 011452 210 YSAQDSIYKVFDLKNYT------MLYSI----S--D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIED---GTVLKS 272 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~------~l~tl----~--~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t---G~~L~t 272 (485)
+.-.++++.+.++...+ ....+ . + ..+-.|++.| ++.|++... ..|.+|+.+.. +..+..
T Consensus 81 ~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE---~~P~~l~~~~~~~~~~~~~~ 157 (248)
T PF06977_consen 81 SEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE---RKPKRLYEVNGFPGGFDLFV 157 (248)
T ss_dssp EETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE---SSSEEEEEEESTT-SS--EE
T ss_pred EEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC---CCChhhEEEccccCccceee
Confidence 76668999999983221 11222 1 1 3589999998 567766532 25777777643 333322
Q ss_pred ee--c------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--cc-------CCCceEEEEEcCCCcEE
Q 011452 273 FN--H------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RT-------EFMTPSAFIFLYENQLF 335 (485)
Q Consensus 273 l~--~------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~g-------h~~~v~avaFspdg~ll 335 (485)
.. . ......+++|.+..+..++-+++...|-+.| .+|+.+..+ .. ...++..|+|.|+|.+.
T Consensus 158 ~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY 236 (248)
T PF06977_consen 158 SDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY 236 (248)
T ss_dssp EE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE
T ss_pred ccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE
Confidence 21 1 1223458899876666666688999999999 557765543 22 23479999999999999
Q ss_pred EEEe
Q 011452 336 LTFR 339 (485)
Q Consensus 336 aS~s 339 (485)
+++-
T Consensus 237 IvsE 240 (248)
T PF06977_consen 237 IVSE 240 (248)
T ss_dssp EEET
T ss_pred EEcC
Confidence 8865
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.063 Score=60.87 Aligned_cols=233 Identities=15% Similarity=0.181 Sum_probs=149.8
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC-----------ceEEEEEcCCCCeeEEEEe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG-----------IMLLIFTKASGHVPLKILS 263 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg-----------~~ll~sss~~~D~tIklWd 263 (485)
++.++ |.| +||+|+ -+.|-|=|..+++.+.++. ...|..|+++|- ..++++ ++|-.+.|-|||
T Consensus 20 A~Dw~-~~G-LiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA-saD~~GrIil~d 95 (1062)
T KOG1912|consen 20 AADWS-PSG-LIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA-SADISGRIILVD 95 (1062)
T ss_pred ccccC-ccc-eEEEec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE-eccccCcEEEEE
Confidence 56665 445 789988 4678888999999998885 568999998751 223333 345568999999
Q ss_pred cCCCeEEEEeecCCcceeEEEEEec-CC--CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQ-FN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~-~~--~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
...+..+..|++|...+..+.|.+. +. ..|++=..-.+|-|||..||+..--..--.....+|.|-| |.+.|.-.+
T Consensus 96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~ 175 (1062)
T KOG1912|consen 96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG 175 (1062)
T ss_pred ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence 9999999999988888888888642 22 3455557788999999999987654332233455566655 444333333
Q ss_pred -CCcEEEEeC--------CCcEEEEeecCCCC------------CCCCC--------eeEEEECCCCC--EEEEEecCCC
Q 011452 340 -NRTVAVWNF--------RGELVTSFEDHLLW------------HPDCN--------TNNIYITSDQD--LIISYCKADS 388 (485)
Q Consensus 340 -D~TIklWd~--------~G~ll~tl~gH~~~------------~~~~~--------v~svafSpDG~--~LaS~s~d~~ 388 (485)
.|.+-+-++ -|+..+.-.+|... +..+. .-..+|+|.=+ +++..
T Consensus 176 s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~----- 250 (1062)
T KOG1912|consen 176 SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF----- 250 (1062)
T ss_pred cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-----
Confidence 665555542 25666665665541 00111 01234566433 33333
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
-.-+-|.|++=-+|+.++.--.+ .+-=|.+=||+
T Consensus 251 --------prellv~dle~~~~l~vvpier~--------------------------------------~akfv~vlP~~ 284 (1062)
T KOG1912|consen 251 --------PRELLVFDLEYECCLAVVPIERG--------------------------------------GAKFVDVLPDP 284 (1062)
T ss_pred --------ccceEEEcchhhceeEEEEeccC--------------------------------------CcceeEeccCC
Confidence 25688999988888888754321 22224444554
Q ss_pred --CEEEEecCCCcEEEcc
Q 011452 469 --NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 469 --~~LaSgs~DgtVklWd 484 (485)
..|+++-.||-+-+|-
T Consensus 285 ~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 285 RRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred CcceEEEEecCCeEEEEE
Confidence 5699999999998883
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.41 Score=47.09 Aligned_cols=231 Identities=14% Similarity=0.120 Sum_probs=128.4
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
++.|+.|.++| +-+++.........+.. ...|..+..-|+=+.|+..+ + +++.+.++..=......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~~--~~~I~ql~vl~~~~~llvLs----d-------~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRILK--LSSITQLSVLPELNLLLVLS----D-------GQLYVYDLDSLEPVSTS 72 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEee--cceEEEEEEecccCEEEEEc----C-------CccEEEEchhhcccccc
Confidence 89999999999 77888733333333322 22399999999888877754 2 35555555322221100
Q ss_pred -c-ee--------eeccccCceEEE-EeCCCCeEEEEeeCCCcEEEeecCCC-----eEEEEEc-CCcEEEEEEcCCceE
Q 011452 185 -A-LF--------ESESLKWPGFVE-FDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSIS-DKNVQEIKISPGIML 247 (485)
Q Consensus 185 -~-lf--------~~~~~~~~~~V~-Fs~pnG~~Las~s~D~tiKlWdl~~g-----~~l~tl~-~~~V~~VafSpg~~l 247 (485)
+ .+ .....+.+.+++ -..+++......+..++|.||.+... +.+..+. ...+.+++|.++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~ 152 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKIC 152 (275)
T ss_pred ccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEE
Confidence 0 00 001122222222 01233433334555779999998653 3455554 578999999955444
Q ss_pred EEEEcCCCCeeEEEEecCCCeEEEEeecCCcc---------eeEEE-EEecCCCEEEEEeCCCcEEEEECCCCeeEE--e
Q 011452 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHR---------NKKVD-FIEQFNEKLLVKQENENLQILDVRNFELTE--V 315 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~~L~tl~~~~~~---------~~~V~-f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~ 315 (485)
++.+ ....+.|+.+|....-+...... ...+. |--++++.|++. |..--.-|.. |+..+ .
T Consensus 153 -v~~~----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~ 224 (275)
T PF00780_consen 153 -VGTS----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY--DNIGVFVNKN-GEPSRKST 224 (275)
T ss_pred -EEeC----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--cceEEEEcCC-CCcCcccE
Confidence 4432 36788899888765444211111 11121 111335555542 3333444544 43322 2
Q ss_pred cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCC
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~ 360 (485)
+.= ...+.++++ ...+|+...++.|.||++. |++++++.++.
T Consensus 225 i~W-~~~p~~~~~--~~pyli~~~~~~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 225 IQW-SSAPQSVAY--SSPYLIAFSSNSIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred EEc-CCchhEEEE--ECCEEEEECCCEEEEEECcCCcEEEEEECCC
Confidence 211 235666666 4457888887779999995 99999998764
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.55 Score=48.69 Aligned_cols=211 Identities=10% Similarity=0.086 Sum_probs=123.7
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecC------CC-eEEEEEcC-------CcEEEEEEcCCceEEEEEc----
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK------NY-TMLYSISD-------KNVQEIKISPGIMLLIFTK---- 252 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~------~g-~~l~tl~~-------~~V~~VafSpg~~ll~sss---- 252 (485)
.++-+|.|+|+ |.|..-++...-++..|+|.. .. .++-++.. .....|.|+...-.+++..
T Consensus 21 ~L~N~WGia~~-p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~ 99 (336)
T TIGR03118 21 GLRNAWGLSYR-PGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITG 99 (336)
T ss_pred cccccceeEec-CCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccc
Confidence 45667899998 789999999889999999986 22 24566652 2466677774332322210
Q ss_pred ------CCCCeeEEEEecCCCeEE-----EEee-cCCccee-EEEEEe-cCCCEEEEEe-CCCcEEEEECCCCeeEEecc
Q 011452 253 ------ASGHVPLKILSIEDGTVL-----KSFN-HLLHRNK-KVDFIE-QFNEKLLVKQ-ENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 253 ------~~~D~tIklWdi~tG~~L-----~tl~-~~~~~~~-~V~f~~-~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~ 317 (485)
...|+||-=|.-.-+... ..+. .....++ .+++.. ..+.+|-++- ..++|.++|-.=.+ +. +.
T Consensus 100 ~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~-~~-~~ 177 (336)
T TIGR03118 100 PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP-PP-LP 177 (336)
T ss_pred ceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc-cc-CC
Confidence 023467777764322221 1111 1112333 344421 1134555553 66777777744221 11 11
Q ss_pred cCCC--------ceEEEEEcCCCcEEEEEe--------------CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 318 TEFM--------TPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 318 gh~~--------~v~avaFspdg~llaS~s--------------D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+-+. .+.-+ -.-.+++++|-. -|-|-++|.+|.+++.|..- .. .+. =|.|++.|
T Consensus 178 g~F~DP~iPagyAPFnI-qnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~-g~-LNa-PWG~a~AP 253 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNV-QNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASS-GR-LNA-PWGLAIAP 253 (336)
T ss_pred CCccCCCCCCCCCCcce-EEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccC-Cc-ccC-CceeeeCh
Confidence 1110 11111 112466666653 35899999999999998522 11 122 36888866
Q ss_pred ------CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 376 ------DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 376 ------DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
.|++|+---- ||+|+.+|..+|+.+-.|.+-++
T Consensus 254 a~FG~~sg~lLVGNFG-----------DG~InaFD~~sG~~~g~L~~~~G 292 (336)
T TIGR03118 254 ESFGSLSGALLVGNFG-----------DGTINAYDPQSGAQLGQLLDPDN 292 (336)
T ss_pred hhhCCCCCCeEEeecC-----------CceeEEecCCCCceeeeecCCCC
Confidence 6888886543 89999999999999999988664
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0035 Score=63.06 Aligned_cols=153 Identities=12% Similarity=0.080 Sum_probs=93.5
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE-EEEEe-CCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL-FLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l-laS~s-D~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSp 375 (485)
+..++|+++--+.+.....-...|.+++-.|..|. ++.|+ ||.|-|||.+ +. .+-.|..|... ++.|-|.|
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~-----i~eV~FHp 233 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAE-----IWEVHFHP 233 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhh-----hhheeccC
Confidence 35677777643332222222335888887776555 45556 9999999996 44 45678889887 99999999
Q ss_pred -CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc-cccccchh
Q 011452 376 -DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA-SRIRSTVA 453 (485)
Q Consensus 376 -DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 453 (485)
+++.|.+++. ||++-.||.. ++.|. +...... -.+|+.---.|+ -.+.+.++
T Consensus 234 k~p~~Lft~se-----------dGslw~wdas-~~~l~-i~~~~s~-------------~s~WLsgD~v~s~i~i~~ll~ 287 (319)
T KOG4714|consen 234 KNPEHLFTCSE-----------DGSLWHWDAS-TTFLS-ISNQASV-------------ISSWLSGDPVKSRIEITSLLP 287 (319)
T ss_pred CCchheeEecC-----------CCcEEEEcCC-CceEE-ecCcccc-------------ccccccCCcccceEeeecccc
Confidence 7889999886 7999999955 55554 2111100 001111100000 11222222
Q ss_pred cccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 454 EALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 454 ~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+--..|. .|+=-|..|++|+.-+.|.|.++
T Consensus 288 ~~~~Sin--sfDV~g~~lVcgtd~eaIyl~~~ 317 (319)
T KOG4714|consen 288 SRSLSIN--SFDVLGPCLVCGTDAEAIYLTRH 317 (319)
T ss_pred ccceeee--eeeccCceEEeccccceEEEecc
Confidence 2112343 46667899999999999988753
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=67.86 Aligned_cols=67 Identities=15% Similarity=0.222 Sum_probs=55.6
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
|.+.+++|+.+.|+-||. ||+|.|||..++ +.++.-+.
T Consensus 262 v~~ca~sp~E~kLvlGC~-----------DgSiiLyD~~~~--~t~~~ka~----------------------------- 299 (545)
T PF11768_consen 262 VICCARSPSEDKLVLGCE-----------DGSIILYDTTRG--VTLLAKAE----------------------------- 299 (545)
T ss_pred ceEEecCcccceEEEEec-----------CCeEEEEEcCCC--eeeeeeec-----------------------------
Confidence 889999999999999997 799999998665 33332222
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
-..+-++|+|+|.+++.||.-|.+.+||+
T Consensus 300 ---------~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 300 ---------FIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred ---------ccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 14567999999999999999999999994
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0043 Score=62.43 Aligned_cols=97 Identities=8% Similarity=0.080 Sum_probs=65.3
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-EEecccCCCceEEEEEcC-CCcEE
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLY-ENQLF 335 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFsp-dg~ll 335 (485)
..+.|++.--+.+..-.-.+..+..++-.|.....++.|++||.+-|||+++... ...+..|...++.|-|.| ++..|
T Consensus 160 ~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 160 NFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred ceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 4456665332222111111233555554433344555578999999999998743 445688999999999987 67788
Q ss_pred EEEe-CCcEEEEeCCCcEEE
Q 011452 336 LTFR-NRTVAVWNFRGELVT 354 (485)
Q Consensus 336 aS~s-D~TIklWd~~G~ll~ 354 (485)
.+++ ||.+--||..++.+.
T Consensus 240 ft~sedGslw~wdas~~~l~ 259 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDASTTFLS 259 (319)
T ss_pred eEecCCCcEEEEcCCCceEE
Confidence 8888 999999998876554
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0006 Score=75.12 Aligned_cols=160 Identities=16% Similarity=0.205 Sum_probs=106.4
Q ss_pred cCCcceeEEEEEecCCCEEEEEe----CCCcEEEEECCCC--eeEEe---cccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNF--ELTEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg--~~~~~---l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+|...-..++|++.|-..|++|= .|-.++|||+.++ -+.+. ..+-....+++++.-|.+++++|. .+.|+
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ 179 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVH 179 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhh
Confidence 44445568888877666777762 6789999999987 22221 112233456888899999999999 99999
Q ss_pred EEeCCCcEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeC-CC-CeEEEEecCCCCCC
Q 011452 345 VWNFRGELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNI-LT-GKCLAKIRASNGLP 421 (485)
Q Consensus 345 lWd~~G~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl-~T-Gk~l~tl~gH~~~~ 421 (485)
+.|++..+.+..+-.+-. |.++.+.| .+.|+++.+ ||-|-+||- .. .+.+..+....+
T Consensus 180 ifdlRqs~~~~~svnTk~-----vqG~tVdp~~~nY~cs~~------------dg~iAiwD~~rnienpl~~i~~~~N-- 240 (783)
T KOG1008|consen 180 IFDLRQSLDSVSSVNTKY-----VQGITVDPFSPNYFCSNS------------DGDIAIWDTYRNIENPLQIILRNEN-- 240 (783)
T ss_pred hhhhhhhhhhhhhhhhhh-----cccceecCCCCCceeccc------------cCceeeccchhhhccHHHHHhhCCC--
Confidence 999975554433323322 67888999 999999986 589999992 21 233334432221
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecCC-CcEEEccC
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNRH-GLVHVWSN 485 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~D-gtVklWd~ 485 (485)
++. ..+.+++|.|-.. .|++-++| +||++.++
T Consensus 241 ----------------------~~~----------~~l~~~aycPtrtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 241 ----------------------KKP----------KQLFALAYCPTRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred ----------------------Ccc----------cceeeEEeccCCcchhhhhccCcceEEEecc
Confidence 011 2688999999764 35555554 68887763
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.035 Score=63.70 Aligned_cols=178 Identities=11% Similarity=0.034 Sum_probs=117.3
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
++.++.-|+.-..+-..|+.++++..+.. ... |.+- -+++.+..+... ++|-|-|..+-+.+++|..|++.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~---v~imR~Nnr~lf~G~t~--G~V~LrD~~s~~~iht~~aHs~si 220 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG---VTIMRYNNRNLFCGDTR--GTVFLRDPNSFETIHTFDAHSGSI 220 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc---eEEEEecCcEEEeeccc--ceEEeecCCcCceeeeeeccccce
Confidence 34566667666666788998887765553 222 3333 455666654443 899999999999999999999988
Q ss_pred eEEEEEecCCCEEEEEe---------CCCcEEEEECCCCeeEEecccCCCceEEEEEcC--CCcEEEEEeCCcEEEEeCC
Q 011452 281 KKVDFIEQFNEKLLVKQ---------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--ENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s---------~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp--dg~llaS~sD~TIklWd~~ 349 (485)
...+. .|..|++.| .|.-|++||+++=+.+..+.=|.+ +.-+.|.| -.++.++++-|...+-|..
T Consensus 221 SDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~ 296 (1118)
T KOG1275|consen 221 SDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTA 296 (1118)
T ss_pred eeeec---cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC-chhhhhcccccceEEEEecccceeecccc
Confidence 77664 367777754 367789999998665544432222 12233544 4555555558888887731
Q ss_pred --Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 350 --GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 350 --G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
++ ....+--|... ..+.+..||++|+.||-+.. +|-|++|-
T Consensus 297 ~lsNP~~~~~~v~p~~---s~i~~fDiSsn~~alafgd~-----------~g~v~~wa 340 (1118)
T KOG1275|consen 297 TLSNPPAGVKMVNPNG---SGISAFDISSNGDALAFGDH-----------EGHVNLWA 340 (1118)
T ss_pred ccCCCccceeEEccCC---CcceeEEecCCCceEEEecc-----------cCcEeeec
Confidence 22 23333223221 11789999999999999865 79999996
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.7 Score=47.80 Aligned_cols=203 Identities=12% Similarity=0.108 Sum_probs=124.9
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc----C---CcEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----D---KNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~----~---~~V~~Va 240 (485)
+.+.-|+...|+. ..|..-. .......++ ..|.++++ +.-+.+++++++.....+. + ..-++++
T Consensus 47 ~~i~r~~~~~g~~----~~~~~p~-~~~~~~~~d-~~g~Lv~~---~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGKK----RVFPSPG-GFSSGALID-AGGRLIAC---EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCce----EEEECCC-Ccccceeec-CCCeEEEE---ccccEEEeccCCceeEEeccccCCCCcCCCCcee
Confidence 4555556555543 2344311 112235565 45655543 3456678877666533332 1 3467889
Q ss_pred EcCCceEEEEEcC-----CC--CeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCC--
Q 011452 241 ISPGIMLLIFTKA-----SG--HVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-- 309 (485)
Q Consensus 241 fSpg~~ll~sss~-----~~--D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t-- 309 (485)
+.|++.+.++... .. -.+-.||-+. .|...+-+..+...-+.|+|+ ||+..|..+ +..+.|.-+++..
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~S-pDg~tly~aDT~~~~i~r~~~d~~~ 196 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFS-PDGKTLYVADTPANRIHRYDLDPAT 196 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEEC-CCCCEEEEEeCCCCeEEEEecCccc
Confidence 9987777666443 11 0122466655 678888777665566799997 778788877 5778888887652
Q ss_pred Ce-----eEEecccCCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEE
Q 011452 310 FE-----LTEVSRTEFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLII 381 (485)
Q Consensus 310 g~-----~~~~l~gh~~~v~avaFspdg~llaS~s-D~-TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~La 381 (485)
+. .......+...+-.++.--||.+.+++- ++ -|..|+.+|+++...+-...+ +.+++| .|+.+.|.
T Consensus 197 g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~l~~~i~lP~~~-----~t~~~FgG~~~~~L~ 271 (307)
T COG3386 197 GPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGKLLGEIKLPVKR-----PTNPAFGGPDLNTLY 271 (307)
T ss_pred CccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCcEEEEEECCCCC-----CccceEeCCCcCEEE
Confidence 21 1222223456667777778888887555 44 899999999999988877544 566777 45666666
Q ss_pred EEec
Q 011452 382 SYCK 385 (485)
Q Consensus 382 S~s~ 385 (485)
..+.
T Consensus 272 iTs~ 275 (307)
T COG3386 272 ITSA 275 (307)
T ss_pred EEec
Confidence 5553
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.1 Score=45.01 Aligned_cols=185 Identities=14% Similarity=0.139 Sum_probs=106.3
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC--eE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG--TV 269 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG--~~ 269 (485)
+..++|++.++.+.|.....+.|---++ +|+.+..++ + +..-.|++..++.++++.. .++++.+.++... ..
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEET--TTTEEEEEEE----TT-
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEc--CCCcEEEEEEecccccc
Confidence 4579998545666666666777766665 688887775 3 4688899997777777643 3478888877321 11
Q ss_pred ----EEEee--cC---CcceeEEEEEecCCCEEEEEeCCCcEEEEECCC---CeeEEe--------cccCCCceEEEEEc
Q 011452 270 ----LKSFN--HL---LHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---FELTEV--------SRTEFMTPSAFIFL 329 (485)
Q Consensus 270 ----L~tl~--~~---~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t---g~~~~~--------l~gh~~~v~avaFs 329 (485)
.+.+. -. ......|+|. +.++.|++..+....+|+.+.. +..+.. .......+++++|.
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D-~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~ 179 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYD-PKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYD 179 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEE-TTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEE
T ss_pred chhhceEEecccccCCCcceEEEEEc-CCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEc
Confidence 12232 11 1123589997 5577888888888888888764 222221 12244578999998
Q ss_pred CC-CcEEEEEe-CCcEEEEeCCCcEEEEee--c--CCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 330 YE-NQLFLTFR-NRTVAVWNFRGELVTSFE--D--HLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 330 pd-g~llaS~s-D~TIklWd~~G~ll~tl~--g--H~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
|. |.+++-+. .+.|-..|.+|+.+..+. . |.++..-..--.|+|.|||.+.++.
T Consensus 180 p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 180 PRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred CCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 76 56666666 999999998899876543 2 1111101124689999999988874
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.00054 Score=75.50 Aligned_cols=191 Identities=17% Similarity=0.137 Sum_probs=121.3
Q ss_pred cCEEEEEeCCCeEEeeecccCc-E-EEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccC--C
Q 011452 105 RDIVFALAQSGVCAAFCRETNQ-R-ICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRG--K 179 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~-~-l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G--~ 179 (485)
+-+++.|+.+|.|.+=....-. - --+.++ +.....+++|++-. +.||. +.+..+. --.++|||+.++ .
T Consensus 70 ~cIlavG~atG~I~l~s~r~~hdSs~E~tp~-~ar~Ct~lAwneLDtn~LAa-gldkhrn-----ds~~~Iwdi~s~ltv 142 (783)
T KOG1008|consen 70 RCILAVGSATGNISLLSVRHPHDSSAEVTPG-YARPCTSLAWNELDTNHLAA-GLDKHRN-----DSSLKIWDINSLLTV 142 (783)
T ss_pred hhhhhhccccCceEEeecCCcccccceeccc-ccccccccccccccHHHHHh-hhhhhcc-----cCCccceecccccCC
Confidence 3578888888888886543111 0 113333 55678899999863 23443 3333322 135779999887 3
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEEcCCcEEEEEEcC--CceEEEEEcCCCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISDKNVQEIKISP--GIMLLIFTKASGH 256 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl~~~~V~~VafSp--g~~ll~sss~~~D 256 (485)
+-.. ++|..+.+.-+.+|.+. -|.+++.+|..-+.|+++|+.. ..-...+....|+.+.++| .+.++++ .|
T Consensus 143 Pke~-~~fs~~~l~gqns~cwl-rd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~----~d 216 (783)
T KOG1008|consen 143 PKES-PLFSSSTLDGQNSVCWL-RDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN----SD 216 (783)
T ss_pred Cccc-cccccccccCccccccc-cCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc----cc
Confidence 3222 23443334444578886 7889999999999999999872 2223344456788999998 5555443 35
Q ss_pred eeEEEEecCC--CeEEEEeecCCc----ceeEEEEEecCCCEEEEEe-CCCcEEEEECC
Q 011452 257 VPLKILSIED--GTVLKSFNHLLH----RNKKVDFIEQFNEKLLVKQ-ENENLQILDVR 308 (485)
Q Consensus 257 ~tIklWdi~t--G~~L~tl~~~~~----~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~ 308 (485)
+-|-+||..- -..+.++.+... +...++++|-..+.|++-+ .-+||+++|+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 7899999311 112333322112 2678999987788888877 66999999987
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.18 Score=59.58 Aligned_cols=113 Identities=13% Similarity=0.189 Sum_probs=75.5
Q ss_pred EEEEEcCCCcEEEEE-----eC-CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 324 SAFIFLYENQLFLTF-----RN-RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 324 ~avaFspdg~llaS~-----sD-~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
.+|.|--||++||.. .+ ++|++||.+|.|-.+=+--..- =.++++=|.|.+||+--. .++|
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l-----~~~LsWkPsgs~iA~iq~--------~~sd 265 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGL-----QHSLSWKPSGSLIAAIQC--------KTSD 265 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCccccc-----ccceeecCCCCeEeeeee--------cCCC
Confidence 468899999999984 26 8999999997765443322221 246888999999998765 2456
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE---e
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT---G 474 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS---g 474 (485)
++|.++. .+|-. |.. +.-..+.+ -..|..|+|+.++..||. .
T Consensus 266 ~~IvffE-rNGL~------hg~----f~l~~p~d------------------------e~~ve~L~Wns~sdiLAv~~~~ 310 (1265)
T KOG1920|consen 266 SDIVFFE-RNGLR------HGE----FVLPFPLD------------------------EKEVEELAWNSNSDILAVVTSN 310 (1265)
T ss_pred CcEEEEe-cCCcc------ccc----cccCCccc------------------------ccchheeeecCCCCceeeeecc
Confidence 7899987 34532 221 00000000 014889999999999998 5
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
.....|+||-
T Consensus 311 ~e~~~v~lwt 320 (1265)
T KOG1920|consen 311 LENSLVQLWT 320 (1265)
T ss_pred cccceEEEEE
Confidence 5666699994
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.45 E-value=1.4 Score=45.71 Aligned_cols=261 Identities=9% Similarity=0.047 Sum_probs=139.0
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEE-Eeec-------CCc--------ccEEEEEEeeCCCEEEEEEe
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRIC-FLNV-------TAD--------EVIRSLFYNKNNDSLITVSV 156 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~-tl~g-------~~~--------~~i~sv~~spdg~~Las~S~ 156 (485)
...+....+| |+.||-.. ++-+-+++..+|+..+ |-.| -.+ +.-..+.|||||+.||....
T Consensus 42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 3445555555 77777665 5678888877776554 1112 111 12356789999999999776
Q ss_pred ecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce--EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE-EEEc-
Q 011452 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG--FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS- 232 (485)
Q Consensus 157 d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~--~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-~tl~- 232 (485)
|.+.= +.+.+-+..... ...|. .+.+ |--|.... .-.+.|+|+++++.. ..+.
T Consensus 121 d~~~v------~~~~~~~~~~~~------------~~yp~~~~~~Y-Pk~G~~np----~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 121 DEREV------PEYPLPDYSPPD------------SQYPEVESIRY-PKAGDPNP----RVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp E-TTS-------EEEEEEESSST------------ESS-EEEEEE---BTTS-------EEEEEEEESSSTCCCEE---H
T ss_pred CCcCC------ceEEeeccCCcc------------ccCCccccccc-CCCCCcCC----ceEEEEEECCCCcEEEeeecc
Confidence 43221 333332211110 00111 2222 11122211 124556888888742 2222
Q ss_pred -----CCcEEEEEEcCCce-EEEE--EcCCCCeeEEEEecCCCeEEEEeec-CCcce---eEEEEEecCCCEEEE-EeCC
Q 011452 233 -----DKNVQEIKISPGIM-LLIF--TKASGHVPLKILSIEDGTVLKSFNH-LLHRN---KKVDFIEQFNEKLLV-KQEN 299 (485)
Q Consensus 233 -----~~~V~~VafSpg~~-ll~s--ss~~~D~tIklWdi~tG~~L~tl~~-~~~~~---~~V~f~~~~~~~lls-~s~D 299 (485)
+..+..+.++|++. +++. ........+.+.|.++|++-..+.. ..+.+ ....|..+++..++- ...|
T Consensus 178 ~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~ 257 (353)
T PF00930_consen 178 SLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD 257 (353)
T ss_dssp HHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred ccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence 34688999997555 3332 2223335677789988877544432 11233 256665234444444 5577
Q ss_pred CcEEEE--ECCCCeeEEecccCCCceEE-EEEcCCCcEEE-EEe-C--CcEEEEeC--C-CcEEEEeecCCCCCCCCCee
Q 011452 300 ENLQIL--DVRNFELTEVSRTEFMTPSA-FIFLYENQLFL-TFR-N--RTVAVWNF--R-GELVTSFEDHLLWHPDCNTN 369 (485)
Q Consensus 300 ~tIkIW--Dv~tg~~~~~l~gh~~~v~a-vaFspdg~lla-S~s-D--~TIklWd~--~-G~ll~tl~gH~~~~~~~~v~ 369 (485)
|--+|+ |..++.......| ...|.. +.+.++++.+. ++. + ..-.||-+ + |..++.|+.....| .
T Consensus 258 G~~hly~~~~~~~~~~~lT~G-~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-----~ 331 (353)
T PF00930_consen 258 GYRHLYLYDLDGGKPRQLTSG-DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-----Y 331 (353)
T ss_dssp SSEEEEEEETTSSEEEESS-S-SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-----E
T ss_pred CCcEEEEEcccccceeccccC-ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-----e
Confidence 655555 6776775544444 446645 56788877554 444 2 35566655 6 67788888776552 5
Q ss_pred EEEECCCCCEEEEEec
Q 011452 370 NIYITSDQDLIISYCK 385 (485)
Q Consensus 370 svafSpDG~~LaS~s~ 385 (485)
++.|||||++++-.|.
T Consensus 332 ~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 332 SASFSPDGKYYVDTYS 347 (353)
T ss_dssp EEEE-TTSSEEEEEEE
T ss_pred EEEECCCCCEEEEEEc
Confidence 8999999999987764
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.28 Score=54.17 Aligned_cols=91 Identities=10% Similarity=0.029 Sum_probs=67.8
Q ss_pred EEEECCCCeeEEe---cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCC
Q 011452 303 QILDVRNFELTEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 303 kIWDv~tg~~~~~---l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~ 378 (485)
.+|++...+..++ .-.....|.+.+++|+.+.|+-|+ ||+|.+||.+-+ ++++..+..- ..-++++|+|.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-~t~~~ka~~~-----P~~iaWHp~ga 312 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-VTLLAKAEFI-----PTLIAWHPDGA 312 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-eeeeeeeccc-----ceEEEEcCCCc
Confidence 4566665544332 124566899999999999999999 999999999633 3333333322 67899999999
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+++.|+. -|-|.+||+.-.-+
T Consensus 313 i~~V~s~-----------qGelQ~FD~ALspi 333 (545)
T PF11768_consen 313 IFVVGSE-----------QGELQCFDMALSPI 333 (545)
T ss_pred EEEEEcC-----------CceEEEEEeecCcc
Confidence 9999986 59999999875443
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.58 Score=50.04 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=37.0
Q ss_pred cEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 216 IYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.|+|++. .|+++.++. .+.|-.+.|+.+..|++-. .|+++++.|+. |+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~---~dG~v~vy~~~-G~~ 112 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQ---SDGTVRVYDLF-GEF 112 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEE---cCCEEEEEeCC-Cce
Confidence 5999985 677777764 5789999999766666553 34899999985 555
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.16 Score=58.36 Aligned_cols=282 Identities=17% Similarity=0.165 Sum_probs=154.5
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeec
Q 011452 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (485)
Q Consensus 143 ~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl 222 (485)
.|.|---.+|.+| ||+=.++.+.|+- .+|+++.- . +.-.|..++.+. |.--+||.|=.-+.+-||..
T Consensus 22 SWHPsePlfAVA~------fS~er~GSVtIfa-dtGEPqr~---V--t~P~hatSLCWH-pe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 22 SWHPSEPLFAVAS------FSPERGGSVTIFA-DTGEPQRD---V--TYPVHATSLCWH-PEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred ccCCCCceeEEEE------ecCCCCceEEEEe-cCCCCCcc---c--ccceehhhhccC-hHHHHHhhccccceeEEEec
Confidence 4566666777766 5666778888854 89998421 1 112344467786 77788898888899999986
Q ss_pred CCCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc----ceeEEEE-EecCCC---
Q 011452 223 KNYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----RNKKVDF-IEQFNE--- 291 (485)
Q Consensus 223 ~~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~----~~~~V~f-~~~~~~--- 291 (485)
.+ +..++.. ...|+-+.|||+|..+.+. +.-+.+.+|...--..+++.+-.+| +..-+.| .+++++
T Consensus 89 ~~-~e~htv~~th~a~i~~l~wS~~G~~l~t~--d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~ 165 (1416)
T KOG3617|consen 89 NT-TETHTVVETHPAPIQGLDWSHDGTVLMTL--DNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKF 165 (1416)
T ss_pred CC-ceeeeeccCCCCCceeEEecCCCCeEEEc--CCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhh
Confidence 54 4555553 4589999999855544442 4558999997642222333221111 1122223 233332
Q ss_pred ---EEEEEeCCCcEE-EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCC----CC
Q 011452 292 ---KLLVKQENENLQ-ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL----LW 362 (485)
Q Consensus 292 ---~lls~s~D~tIk-IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~----~~ 362 (485)
+.++++++.-+- ..+.+-...-... .|.+ +|+|..|.-+. +|||--=|-.|++.+...-.. +|
T Consensus 166 ~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ksg-------v~~g~~F~~~~~~GtVyyvdq~g~~~~V~k~dS~vQmLf 237 (1416)
T KOG3617|consen 166 KLAKAAVTGDESALDEPFNWKESLAERSD-EKSG-------VPKGTEFLFAGKSGTVYYVDQNGRQRTVHKLDSEVQMLF 237 (1416)
T ss_pred hhhhhhccCchhhhcccccCccchhhccc-cccC-------CCCCcEEEEEcCCceEEEEcCCCcEEEEEEccchHHHHH
Confidence 445555555443 4443311111111 1221 68888888888 999987777788766554332 34
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE-eCCCCe----EEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS-NILTGK----CLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW-dl~TGk----~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
++.|..-.+.+ . +=++-+. -..+|+ |-.++.|-.+ ++.|. ++|
T Consensus 238 ~~~~eai~~i~-----------e-----------~lr~~l~~v~~~G~~ee~~~vk~sgk~G--------grqGg--iA~ 285 (1416)
T KOG3617|consen 238 MGYCEAISIII-----------E-----------FLRDCLIFVLAKGTSEERCAVKVSGKLG--------GRQGG--IAC 285 (1416)
T ss_pred hcccceEEEEe-----------e-----------eceeeEEEecCCCchHHhhhhhhccccC--------CccCc--ccc
Confidence 44432111110 0 0111111 111121 2223333221 12222 333
Q ss_pred cccccccccccccchhccc---CCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 438 NVKKHSHASRIRSTVAEAL---EDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l---~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
--+- .-++.+.-|++ +.+.+++|+.-+..|.-|-..|.|.+|.
T Consensus 286 sEss----GvLr~~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~ 331 (1416)
T KOG3617|consen 286 SESS----GVLRKSEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWL 331 (1416)
T ss_pred cccc----ccccCCcchhhhcCCceEEEEEeccceEEEecccCCcEEEee
Confidence 2221 12333333433 3899999999999999999999999994
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=1.8 Score=49.47 Aligned_cols=182 Identities=5% Similarity=-0.006 Sum_probs=95.9
Q ss_pred EEEEeCCCCeEEEEeeC-----CCcEEEeecCCCeEEE-EEcCCcEEEEEEcCCc-eEEEEEcCC---CCeeEEEEecCC
Q 011452 197 FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLY-SISDKNVQEIKISPGI-MLLIFTKAS---GHVPLKILSIED 266 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~-----D~tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~-~ll~sss~~---~D~tIklWdi~t 266 (485)
.+.+| |||++||.+.. .-++++=|+.+|+.+- .+.+.. ..++|+|++ .++.+.-.. ....|.++++.|
T Consensus 131 ~~~~S-pdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt 208 (686)
T PRK10115 131 GMAIT-PDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT 208 (686)
T ss_pred EEEEC-CCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc-eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence 66776 79999998742 3467788888886432 222222 469999644 444432211 124678889998
Q ss_pred C--eEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEEC--CCCeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 267 G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDV--RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 267 G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv--~tg~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
+ +-...+....+...-..+.+.++..+++.+ .+..+.+++. .+++....+.........+. ...+.+++...
T Consensus 209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ly~~tn 287 (686)
T PRK10115 209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRFYLRSN 287 (686)
T ss_pred ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEEEEEEc
Confidence 8 333334322222331222334677776643 5678999994 34553333322333333333 44556555554
Q ss_pred -C-CcEEEEeC--CC-cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 340 -N-RTVAVWNF--RG-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 340 -D-~TIklWd~--~G-~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+ ..-+|..+ .. ...+.+-.|.. +..+.++.++. ..++++...
T Consensus 288 ~~~~~~~l~~~~~~~~~~~~~l~~~~~---~~~i~~~~~~~-~~l~~~~~~ 334 (686)
T PRK10115 288 RHGKNFGLYRTRVRDEQQWEELIPPRE---NIMLEGFTLFT-DWLVVEERQ 334 (686)
T ss_pred CCCCCceEEEecCCCcccCeEEECCCC---CCEEEEEEEEC-CEEEEEEEe
Confidence 2 34455543 31 11233434421 12377888873 356666654
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.4 Score=44.77 Aligned_cols=172 Identities=15% Similarity=0.092 Sum_probs=103.7
Q ss_pred CeEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEE-EeC
Q 011452 225 YTMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLV-KQE 298 (485)
Q Consensus 225 g~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls-~s~ 298 (485)
++.+.+.+ + ...+.+.|-+++.|.-|..--+...|+.+|++||+.++...-. ...+ .++.. +++|.. +=.
T Consensus 33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~-~~~FgEGit~~---~d~l~qLTWk 108 (264)
T PF05096_consen 33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP-PRYFGEGITIL---GDKLYQLTWK 108 (264)
T ss_dssp EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T-TT--EEEEEEE---TTEEEEEESS
T ss_pred eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC-ccccceeEEEE---CCEEEEEEec
Confidence 45566664 2 4689999966666666655555679999999999998765521 2222 44443 344444 447
Q ss_pred CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
+++.-+||..+.+.+.++. ....=|.++ .||+.|+.+. ..++..+|.. -+.+.+++-...-.|-..+|.+-+- |
T Consensus 109 ~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~ 184 (264)
T PF05096_consen 109 EGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N 184 (264)
T ss_dssp SSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred CCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence 8999999999999988874 234557776 4555555444 7778888874 5555555433222222336777764 6
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
|.+.|=-=. ...|-.-|..||+++..+.
T Consensus 185 G~IyANVW~-----------td~I~~Idp~tG~V~~~iD 212 (264)
T PF05096_consen 185 GKIYANVWQ-----------TDRIVRIDPETGKVVGWID 212 (264)
T ss_dssp TEEEEEETT-----------SSEEEEEETTT-BEEEEEE
T ss_pred CEEEEEeCC-----------CCeEEEEeCCCCeEEEEEE
Confidence 766664433 2456666999999998874
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.37 Score=54.09 Aligned_cols=186 Identities=10% Similarity=0.107 Sum_probs=97.7
Q ss_pred ccEEEEEEeeCCCEEEEEEee--cCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 137 EVIRSLFYNKNNDSLITVSVY--ASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d--~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
..+.+.++||||+.+|.+-.. ...| ..-.||=...|... .++..... ...-.|| |||+.|++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d------~~s~Lwv~~~gg~~--~~lt~g~~---~t~PsWs-pDG~~lw~v~dg 417 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPD------PASSLWVGPLGGVA--VQVLEGHS---LTRPSWS-LDADAVWVVVDG 417 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCC------cceEEEEEeCCCcc--eeeecCCC---CCCceEC-CCCCceEEEecC
Confidence 468899999999999886631 1112 34445544323221 23322211 2345676 788877776532
Q ss_pred -CcEEEe-----------ecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEE---EecCCCeE-E---EEee-
Q 011452 215 -SIYKVF-----------DLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKI---LSIEDGTV-L---KSFN- 274 (485)
Q Consensus 215 -~tiKlW-----------dl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIkl---Wdi~tG~~-L---~tl~- 274 (485)
..+++. ++..++....+ +..|.++++||+|..++.-.. +.|.+ =..+.|+. | ..+.
T Consensus 418 ~~~~~v~~~~~~gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~~---g~v~Va~Vvr~~~G~~~l~~~~~l~~ 493 (591)
T PRK13616 418 NTVVRVIRDPATGQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMIIG---GKVYLAVVEQTEDGQYALTNPREVGP 493 (591)
T ss_pred cceEEEeccCCCceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEEC---CEEEEEEEEeCCCCceeecccEEeec
Confidence 222332 33333322211 347999999987765555432 35555 55566751 1 1122
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEE--ECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEeCCc
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQIL--DVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFRNRT 342 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW--Dv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~sD~T 342 (485)
+.......++|.. ++.|+++..+..-.+| ++. |.....+.+ ....+.+|+=++ +.++++.+++.
T Consensus 494 ~l~~~~~~l~W~~--~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~-~~iyv~~~~g~ 561 (591)
T PRK13616 494 GLGDTAVSLDWRT--GDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASP-STVYVTDARAV 561 (591)
T ss_pred ccCCccccceEec--CCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCC-ceEEEEcCCce
Confidence 2223346788863 5567776544444445 455 333222223 355677777666 45666555653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.17 Score=57.54 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=93.2
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC-----CCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-----NDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd-----g~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
.|+++||+|.||++-+-.+-+++..+++.. + -++.+|+++|| .++.++++ .. + +-|.. ++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~-rpiksial~Pd~~~~~sk~fv~GG----~a------g-lvL~e--r~ 146 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-K-RPIKSIALHPDFSRQQSKQFVSGG----MA------G-LVLSE--RN 146 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEec-C-CcceeEEeccchhhhhhhheeecC----cc------e-EEEeh--hh
Confidence 399999999999999999999999998887 3 47999999999 33344422 11 1 22211 11
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcE------EEEEEcCCceEEEE
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNV------QEIKISPGIMLLIF 250 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V------~~VafSpg~~ll~s 250 (485)
=+..-...--++.-+.+.+|.+ .|.++|-++++| |||+|..+.+-+..++- ..| ..+.|.|...|+++
T Consensus 147 wlgnk~~v~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 147 WLGNKDSVVLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred hhcCccceeeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 1100001111122345557777 588999888665 89999998887777741 222 34778888888886
Q ss_pred EcCCCCeeEEEEecCC
Q 011452 251 TKASGHVPLKILSIED 266 (485)
Q Consensus 251 ss~~~D~tIklWdi~t 266 (485)
-+ -+|+|..|..
T Consensus 223 -W~---d~v~i~~I~~ 234 (846)
T KOG2066|consen 223 -WG---DSVKICSIKK 234 (846)
T ss_pred -cC---CeEEEEEEec
Confidence 33 3899999873
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=62.89 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=89.2
Q ss_pred EeecCCcce--eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-----------Cc-EEEE
Q 011452 272 SFNHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-----------NQ-LFLT 337 (485)
Q Consensus 272 tl~~~~~~~--~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-----------g~-llaS 337 (485)
|+.|-.++. .++++++ ++.++-| ....|-+-|..+-+.++++..|+..|+.|.|.|. .+ +||+
T Consensus 8 tlpG~l~~sN~~A~Dw~~--~GLiAyg-shslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 8 TLPGPLSRSNRNAADWSP--SGLIAYG-SHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred cCCCCCCcccccccccCc--cceEEEe-cCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 455444443 3777753 3444444 5568889999999999999999999999998653 33 4555
Q ss_pred Ee-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC---C-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 338 FR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD---Q-DLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 338 ~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD---G-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+. .|.|.|||+. +-.+.-|+-|... +..+++-|. . ++|+.-.. -.+|-|||..||+.+
T Consensus 85 aD~~GrIil~d~~~~s~~~~l~~~~~~-----~qdl~W~~~rd~Srd~LlaIh~-----------ss~lvLwntdtG~k~ 148 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLASVINWLSHSNDS-----VQDLCWVPARDDSRDVLLAIHG-----------SSTLVLWNTDTGEKF 148 (1062)
T ss_pred ccccCcEEEEEehhhhhhhhhcCCCcc-----hhheeeeeccCcchheeEEecC-----------CcEEEEEEccCCcee
Confidence 66 8999999996 7777778777665 566666553 3 33333222 379999999999998
Q ss_pred EEecC
Q 011452 412 AKIRA 416 (485)
Q Consensus 412 ~tl~g 416 (485)
.+...
T Consensus 149 Wk~~y 153 (1062)
T KOG1912|consen 149 WKYDY 153 (1062)
T ss_pred ecccc
Confidence 87654
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.027 Score=62.39 Aligned_cols=77 Identities=12% Similarity=0.075 Sum_probs=64.3
Q ss_pred ceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCee-EEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 322 TPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTN-NIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~-svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
.+.-+.++|...++|... +|.|-+.-++-+.+.++.-|... |. +++|-|||++||-|-+ |||
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRlwtip~p~~~-----v~~sL~W~~DGkllaVg~k-----------dG~ 85 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNWQRLWTIPIPGEN-----VTASLCWRPDGKLLAVGFK-----------DGT 85 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEeccceeEeccCCCCc-----cceeeeecCCCCEEEEEec-----------CCe
Confidence 456677999999999999 99888888887777777655433 44 9999999999999987 799
Q ss_pred EEEEeCCCCeEEEEe
Q 011452 400 INISNILTGKCLAKI 414 (485)
Q Consensus 400 IklWdl~TGk~l~tl 414 (485)
|+|-|+++|..+...
T Consensus 86 I~L~Dve~~~~l~~~ 100 (665)
T KOG4640|consen 86 IRLHDVEKGGRLVSF 100 (665)
T ss_pred EEEEEccCCCceecc
Confidence 999999999887663
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.4 Score=43.95 Aligned_cols=99 Identities=19% Similarity=0.289 Sum_probs=57.2
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEc------CCcEEEEEEcCC----ceEEEEEcC------
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS------DKNVQEIKISPG----IMLLIFTKA------ 253 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~------~~~V~~VafSpg----~~ll~sss~------ 253 (485)
..|+.++|. |||+++++- ..+.|++.+ +++.. +..+. ......|+|+|+ +.+.++.+.
T Consensus 2 ~~P~~~a~~-pdG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~ 78 (331)
T PF07995_consen 2 NNPRSMAFL-PDGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGG 78 (331)
T ss_dssp SSEEEEEEE-TTSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSS
T ss_pred CCceEEEEe-CCCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCC
Confidence 467899998 799999975 499999999 56664 33442 136899999993 444444331
Q ss_pred CCCeeEEEEecCCC-------eEE-EEeec---CCcceeEEEEEecCCCEEEEE
Q 011452 254 SGHVPLKILSIEDG-------TVL-KSFNH---LLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 254 ~~D~tIklWdi~tG-------~~L-~tl~~---~~~~~~~V~f~~~~~~~lls~ 296 (485)
..+..|.-|....+ +.+ ..+.. ..|....++|. |++ +|.++
T Consensus 79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fg-pDG-~LYvs 130 (331)
T PF07995_consen 79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFG-PDG-KLYVS 130 (331)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE--TTS-EEEEE
T ss_pred CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCC-CCC-cEEEE
Confidence 11134444555444 122 22222 34566789997 555 66554
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.92 Score=46.17 Aligned_cols=172 Identities=13% Similarity=0.130 Sum_probs=102.1
Q ss_pred eEEEEecCCCeEEEEeecCC-cceeEEEEEecC------CCEEEEEe-----C-----CCcEEEEECCCC-----eeEEe
Q 011452 258 PLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQF------NEKLLVKQ-----E-----NENLQILDVRNF-----ELTEV 315 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~------~~~lls~s-----~-----D~tIkIWDv~tg-----~~~~~ 315 (485)
.|||.|..+.+.+.++.-.. ..+.++...... .+.+++|. + .|.|.++++... ++...
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 57888888888777665221 233444443222 34666652 1 178999999984 33222
Q ss_pred -cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 316 -SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 316 -l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
.....+.|.+++-- +|. |+.+.+++|.+|++. .+ ++..-.-+... .+.++. .-+++|+.|..
T Consensus 83 ~~~~~~g~V~ai~~~-~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~----~i~sl~--~~~~~I~vgD~------- 147 (321)
T PF03178_consen 83 HSTEVKGPVTAICSF-NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPF----YITSLS--VFKNYILVGDA------- 147 (321)
T ss_dssp EEEEESS-EEEEEEE-TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSS----SEEEEE--EETTEEEEEES-------
T ss_pred EEEeecCcceEhhhh-CCE-EEEeecCEEEEEEccCcccchhhheecceE----EEEEEe--ccccEEEEEEc-------
Confidence 12346788888644 555 666668999999995 55 44332222211 144444 44668888765
Q ss_pred CcCCCCeEEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 393 AEGNAGSINISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 393 ~~~~DgtIklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
-..|-+.... .++.+..+..... -.+|+++.|=+|++.+
T Consensus 148 ----~~sv~~~~~~~~~~~l~~va~d~~------------------------------------~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 148 ----MKSVSLLRYDEENNKLILVARDYQ------------------------------------PRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ----SSSEEEEEEETTTE-EEEEEEESS-------------------------------------BEEEEEEEE-SSSEE
T ss_pred ----ccCEEEEEEEccCCEEEEEEecCC------------------------------------CccEEEEEEecCCcEE
Confidence 4677776443 2444444432110 0389999998787899
Q ss_pred EEecCCCcEEEcc
Q 011452 472 YTGNRHGLVHVWS 484 (485)
Q Consensus 472 aSgs~DgtVklWd 484 (485)
+.+..+|.|.+..
T Consensus 188 i~~D~~gnl~~l~ 200 (321)
T PF03178_consen 188 IVGDKDGNLFVLR 200 (321)
T ss_dssp EEEETTSEEEEEE
T ss_pred EEEcCCCeEEEEE
Confidence 9999999998764
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.92 Score=46.29 Aligned_cols=227 Identities=14% Similarity=0.120 Sum_probs=116.7
Q ss_pred EecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCC--cccceeEEEEeEeccCC
Q 011452 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNF--SSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 103 ~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~--stL~~~t~~lw~i~~G~ 179 (485)
|+++.|..+++|++..+-|..+-.++-..+- .....-|=+.+| ++...++ +..| .=+ +--..-...+|-...+.
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVykskc-gG~~f~sP~i~~g~~sly~a-~t~G-~vlavt~~~~~~~~~w~~~~~~ 179 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-GGGTFVSPVIAPGDGSLYAA-ITAG-AVLAVTKNPYSSTEFWAATRFG 179 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEeccc-CCceeccceecCCCceEEEE-eccc-eEEEEccCCCCcceehhhhcCC
Confidence 3499999999999999999988777765433 222233334444 3332221 1100 000 00000123455555555
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcE-EEEEEcCCceEEEEEcCCCC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNV-QEIKISPGIMLLIFTKASGH 256 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V-~~VafSpg~~ll~sss~~~D 256 (485)
+..+-+|+-.. ++-..-+||++++.. .-| =.||...|+-.++.-+ .++- +-|.+-..+-..+--..
T Consensus 180 PiF~splcv~~------sv~i~~VdG~l~~f~-~sG-~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~--- 248 (354)
T KOG4649|consen 180 PIFASPLCVGS------SVIITTVDGVLTSFD-ESG-RQVWRPATKGPIFMEPCESRPSCQQISLENENCFCAPLPI--- 248 (354)
T ss_pred ccccCceeccc------eEEEEEeccEEEEEc-CCC-cEEEeecCCCceecccccCCCcceEEEEecCCeEEEeccc---
Confidence 53333333221 233323678877665 455 4589888776655543 1221 33333332222211111
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecC--CCEEEE-EeCCCcEEEE---------ECCCCeeEEecccCCCceE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLV-KQENENLQIL---------DVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~--~~~lls-~s~D~tIkIW---------Dv~tg~~~~~l~gh~~~v~ 324 (485)
.---+|..++|..+...- ......+|.++. .++|+. ++.|+.+.|. +-+.|++.+..+ +.+.
T Consensus 249 ~ghL~w~~~~g~t~~vy~---~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~---~el~ 322 (354)
T KOG4649|consen 249 AGHLLWATQSGTTLHVYL---SPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEA---IELS 322 (354)
T ss_pred cceEEEEecCCcEEEEEe---CcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEE---eecC
Confidence 122467777876655443 122223333332 246665 5799999888 444455433221 1111
Q ss_pred EEEE-cC---CCcEEEEEeCCcEEEEeCC
Q 011452 325 AFIF-LY---ENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 325 avaF-sp---dg~llaS~sD~TIklWd~~ 349 (485)
+=+| || ||++|+-++|.-|+-||++
T Consensus 323 ~eIFsSPvii~grl~igcRDdYv~cldl~ 351 (354)
T KOG4649|consen 323 NEIFSSPVIIDGRLLIGCRDDYVRCLDLD 351 (354)
T ss_pred cccccCCeEEccEEEEEEccCeEEEEecc
Confidence 2234 23 7998888889999999986
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.31 Score=52.84 Aligned_cols=134 Identities=15% Similarity=0.252 Sum_probs=78.3
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE-eCCCcEEEEee
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW-NFRGELVTSFE 357 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW-d~~G~ll~tl~ 357 (485)
...+.++ |.+..+++ ..|+.--|+......-... +.-..++|.+.++ +|.-. +++|+|. |++.+.+.++.
T Consensus 35 p~~ls~n-pngr~v~V-~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~ 106 (443)
T PF04053_consen 35 PQSLSHN-PNGRFVLV-CGDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK 106 (443)
T ss_dssp -SEEEE--TTSSEEEE-EETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred CeeEEEC-CCCCEEEE-EcCCEEEEEEccCCccccc-----CceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence 3477776 54555555 7788888888544433322 2335588999666 66665 8999995 66544323332
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
-. ..+..|.. |.+|+..+. +.|.++|+++++.++.+.-.
T Consensus 107 ~~------~~~~~If~---G~LL~~~~~------------~~i~~yDw~~~~~i~~i~v~-------------------- 145 (443)
T PF04053_consen 107 LP------FSVEKIFG---GNLLGVKSS------------DFICFYDWETGKLIRRIDVS-------------------- 145 (443)
T ss_dssp -S------S-EEEEE----SSSEEEEET------------TEEEEE-TTT--EEEEESS---------------------
T ss_pred CC------cccceEEc---CcEEEEECC------------CCEEEEEhhHcceeeEEecC--------------------
Confidence 11 11556654 888888763 68999999999999999642
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
.|..|.||++|+.+|=.+.|. +.|.
T Consensus 146 --------------------~vk~V~Ws~~g~~val~t~~~-i~il 170 (443)
T PF04053_consen 146 --------------------AVKYVIWSDDGELVALVTKDS-IYIL 170 (443)
T ss_dssp --------------------E-EEEEE-TTSSEEEEE-S-S-EEEE
T ss_pred --------------------CCcEEEEECCCCEEEEEeCCe-EEEE
Confidence 578899999999999988764 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.47 Score=53.31 Aligned_cols=140 Identities=9% Similarity=0.007 Sum_probs=76.8
Q ss_pred CcEEEEEEcCCceEEEEEcC------CCCeeEEEEecCCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEe---------
Q 011452 234 KNVQEIKISPGIMLLIFTKA------SGHVPLKILSIEDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQ--------- 297 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~------~~D~tIklWdi~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s--------- 297 (485)
..+.+.++||++..+++... +....|.+++. .|.. +.+ .+ .....-.|+ |+++.+.+.+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~g--~~~t~PsWs-pDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLEG--HSLTRPSWS-LDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeecC--CCCCCceEC-CCCCceEEEecCcceEEEe
Confidence 35778999986665555441 22234555554 3333 333 22 123445554 5555444432
Q ss_pred -CCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEE---eCC-CcEEEEeec-CCCC-CCCCCe
Q 011452 298 -ENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVW---NFR-GELVTSFED-HLLW-HPDCNT 368 (485)
Q Consensus 298 -~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklW---d~~-G~ll~tl~g-H~~~-~~~~~v 368 (485)
.++ .+.+.++..++..+ .....|.++.|||||..+|--.++.|.|= .-+ |+ ..+.. +... .....+
T Consensus 425 ~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ--YALTNPREVGPGLGDTA 499 (591)
T ss_pred ccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc--eeecccEEeecccCCcc
Confidence 223 33334777776654 23446999999999999987777766652 223 65 22210 0000 001115
Q ss_pred eEEEECCCCCEEEEE
Q 011452 369 NNIYITSDQDLIISY 383 (485)
Q Consensus 369 ~svafSpDG~~LaS~ 383 (485)
.++.|.+|+.+++..
T Consensus 500 ~~l~W~~~~~L~V~~ 514 (591)
T PRK13616 500 VSLDWRTGDSLVVGR 514 (591)
T ss_pred ccceEecCCEEEEEe
Confidence 789999999977553
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.44 Score=42.41 Aligned_cols=77 Identities=17% Similarity=0.133 Sum_probs=51.6
Q ss_pred eeEEEEEecCC---CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEE
Q 011452 280 NKKVDFIEQFN---EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 355 (485)
Q Consensus 280 ~~~V~f~~~~~---~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~t 355 (485)
|.++++...++ ..|+++++|..||||+=. +++... .....|.+++-++.++ |+.+- +|||-+++-.-++-+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei-~e~~~v~~L~~~~~~~-F~Y~l~NGTVGvY~~~~RlWRi 77 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEI-TETDKVTSLCSLGGGR-FAYALANGTVGVYDRSQRLWRI 77 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEE-ecccceEEEEEcCCCE-EEEEecCCEEEEEeCcceeeee
Confidence 34455543333 479999999999999854 444444 3556788888777755 66666 9999999875444443
Q ss_pred eecCC
Q 011452 356 FEDHL 360 (485)
Q Consensus 356 l~gH~ 360 (485)
=..|.
T Consensus 78 KSK~~ 82 (111)
T PF14783_consen 78 KSKNQ 82 (111)
T ss_pred ccCCC
Confidence 34444
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.021 Score=56.51 Aligned_cols=133 Identities=16% Similarity=0.108 Sum_probs=85.4
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE-------cCCCcEEEEEe-CCcEEEEeCC--CcEEEEeecCCC
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF-------LYENQLFLTFR-NRTVAVWNFR--GELVTSFEDHLL 361 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-------spdg~llaS~s-D~TIklWd~~--G~ll~tl~gH~~ 361 (485)
.+++.+.|++|+=.+++--+. .+.+.-| .--+..++.+. |+.|.+|+.+ |+..-....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~---------s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e 102 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE---------SCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE 102 (238)
T ss_pred hhccccCCcccccchhhhhhh---------hhhhhhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccc
Confidence 356678899999888874332 1222222 22234456666 9999999875 543221111111
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
.....|....++.+...++. ||-||.|+++-++.+-..-.|+.
T Consensus 103 ----~i~~~Ip~~~~~~~~c~~~~-----------dg~ir~~n~~p~k~~g~~g~h~~---------------------- 145 (238)
T KOG2444|consen 103 ----SIDLGIPNGRDSSLGCVGAQ-----------DGRIRACNIKPNKVLGYVGQHNF---------------------- 145 (238)
T ss_pred ----cceeccccccccceeEEecc-----------CCceeeeccccCceeeeeccccC----------------------
Confidence 11445555666667777665 79999999998888877766652
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEe--cCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTG--NRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg--s~DgtVklWd~ 485 (485)
+.+..+..+--+..|+++ |.|.++|.|+.
T Consensus 146 ---------------~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 146 ---------------ESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ---------------CCcceeEEecCCceEEeeccccchhhhhcch
Confidence 255556666677888888 89999999973
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.66 E-value=2.3 Score=50.73 Aligned_cols=253 Identities=10% Similarity=0.117 Sum_probs=129.5
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE-
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI- 172 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l- 172 (485)
..|.++.|- ..-|..+..+|.+-+=|.++...-+ -|.-++.|-+..+|||.+.++.+.. . +++-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aaswS~Dee~l~liT~----~------~tll~m 136 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASWSPDEELLALITG----R------QTLLFM 136 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee--eeeccCceEEEeecCCCcEEEEEeC----C------cEEEEE
Confidence 357777776 4445556667777777888766443 3446778999999999999988652 1 12221
Q ss_pred ---eEeccCCcCcccceeee----c---cccCce-EEEEeCCCCeE-----EEEeeCCCcEEEeecCCCeEEEEEcCCcE
Q 011452 173 ---EYIRRGKPDAGFALFES----E---SLKWPG-FVEFDDVNGKV-----LTYSAQDSIYKVFDLKNYTMLYSISDKNV 236 (485)
Q Consensus 173 ---w~i~~G~~~~~~~lf~~----~---~~~~~~-~V~Fs~pnG~~-----Las~s~D~tiKlWdl~~g~~l~tl~~~~V 236 (485)
|++-.-+ +|+.. . ..+|-. .-.|.-..|+. +.....++.+ ++ ++.=
T Consensus 137 T~~f~~i~E~-----~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~---~~----------~~~~ 198 (1265)
T KOG1920|consen 137 TKDFEPIAEK-----PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQI---EQ----------DDHK 198 (1265)
T ss_pred eccccchhcc-----ccccccccccccceecccccceeeecchhhhcccccccccccccch---hh----------ccCC
Confidence 2221111 12111 0 111111 11232111111 0000001111 00 0112
Q ss_pred EEEEEcCCc-eEEEEEc-CCCC-eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe---CCCcEEEEECC--
Q 011452 237 QEIKISPGI-MLLIFTK-ASGH-VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVR-- 308 (485)
Q Consensus 237 ~~VafSpg~-~ll~sss-~~~D-~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~-- 308 (485)
.+|.+-.+| ..+++.- ...+ ..||+||.+ |.+-.+-.--.+--..++|- |.|..+++-+ .|..|.++.-.
T Consensus 199 ~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWk-Psgs~iA~iq~~~sd~~IvffErNGL 276 (1265)
T KOG1920|consen 199 TSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWK-PSGSLIAAIQCKTSDSDIVFFERNGL 276 (1265)
T ss_pred ceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeec-CCCCeEeeeeecCCCCcEEEEecCCc
Confidence 235555444 4444211 1122 799999987 55433222111122367775 5788888743 67789988733
Q ss_pred -CCeeEEecccCCCceEEEEEcCCCcEEEE---Ee-CCcEEEEeCC---CcEEEEee--cC--CCCCCCCCeeEEEEC-C
Q 011452 309 -NFELTEVSRTEFMTPSAFIFLYENQLFLT---FR-NRTVAVWNFR---GELVTSFE--DH--LLWHPDCNTNNIYIT-S 375 (485)
Q Consensus 309 -tg~~~~~l~gh~~~v~avaFspdg~llaS---~s-D~TIklWd~~---G~ll~tl~--gH--~~~~~~~~v~svafS-p 375 (485)
.|+..-...-....+..++|+-++.+||. .. ...|++|-+. .-+.+.+. +- ..|||.. -..+.+. -
T Consensus 277 ~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~-~~~L~v~~~ 355 (1265)
T KOG1920|consen 277 RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT-EKTLHVLRE 355 (1265)
T ss_pred cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEeccccccccccCCC-ceeEEEEec
Confidence 33332222223334899999999999997 44 5569999873 33444332 22 3366643 2444444 4
Q ss_pred CCCEEE
Q 011452 376 DQDLII 381 (485)
Q Consensus 376 DG~~La 381 (485)
+|++++
T Consensus 356 sG~~~v 361 (1265)
T KOG1920|consen 356 SGQRLV 361 (1265)
T ss_pred CCcEEE
Confidence 666654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.26 Score=56.17 Aligned_cols=132 Identities=9% Similarity=-0.054 Sum_probs=92.1
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-----
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE----- 331 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd----- 331 (485)
+-|.+.+. .|.. ++.-.|... .-.|++++++|.||+|.|-.+-+.+...+.. -.-.+.+|+++||
T Consensus 59 g~v~~~~~-~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~ 128 (846)
T KOG2066|consen 59 GAVYLTTC-QGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQ 128 (846)
T ss_pred ceEEEEec-CCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhh
Confidence 56666664 4554 333333222 2458999999999999999999888766653 2347899999999
Q ss_pred CcEEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 332 NQLFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.+.+++|+ -| +-|..-+ |..... ..|..- +.|.+|++ .|.+||=++. --||++|+.++
T Consensus 129 sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~~~e---G~I~~i~W--~g~lIAWand------------~Gv~vyd~~~~ 189 (846)
T KOG2066|consen 129 SKQFVSGGMAG-LVLSERNWLGNKDSV-VLSEGE---GPIHSIKW--RGNLIAWAND------------DGVKVYDTPTR 189 (846)
T ss_pred hhheeecCcce-EEEehhhhhcCccce-eeecCc---cceEEEEe--cCcEEEEecC------------CCcEEEecccc
Confidence 66788988 55 7677654 443332 223321 34888888 5789998864 44899999999
Q ss_pred eEEEEecCC
Q 011452 409 KCLAKIRAS 417 (485)
Q Consensus 409 k~l~tl~gH 417 (485)
+.+..++..
T Consensus 190 ~~l~~i~~p 198 (846)
T KOG2066|consen 190 QRLTNIPPP 198 (846)
T ss_pred ceeeccCCC
Confidence 998888653
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.1 Score=42.36 Aligned_cols=193 Identities=12% Similarity=0.116 Sum_probs=117.8
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
.+.+...-+......+.|..+|..+-|.+.+| . -.++..++.+|+.....+|=. ..++ ..++.- +++
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG--~------S~l~~~d~~tg~~~~~~~l~~-~~Fg--EGit~~--~d~ 101 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYG--Q------SSLRKVDLETGKVLQSVPLPP-RYFG--EGITIL--GDK 101 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTT--E------EEEEEEETTTSSEEEEEE-TT-T--E--EEEEEE--TTE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCC--c------EEEEEEECCCCcEEEEEECCc-cccc--eeEEEE--CCE
Confidence 34455433445678899989999888877665 1 356677888888632111000 0111 124442 455
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-----Ccce
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-----LHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-----~~~~ 280 (485)
+..--=.+++.-+||.++-+.+.+++ ...=|.++ ++|..|+.|.+ ...|..+|.++-+..+++.-. ....
T Consensus 102 l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt-~dg~~Li~SDG---S~~L~~~dP~~f~~~~~i~V~~~g~pv~~L 177 (264)
T PF05096_consen 102 LYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT-SDGKRLIMSDG---SSRLYFLDPETFKEVRTIQVTDNGRPVSNL 177 (264)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEE-SSS--EEE-ECSSCEEEE-S---SSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred EEEEEecCCeEEEEccccceEEEEEecCCcceEEE-cCCCEEEEECC---ccceEEECCcccceEEEEEEEECCEECCCc
Confidence 55545578999999999999988886 34566777 66777776633 369999999999888877621 1123
Q ss_pred eEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecc------------cC---CCceEEEEEcCC-CcEEEEEe
Q 011452 281 KKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSR------------TE---FMTPSAFIFLYE-NQLFLTFR 339 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~------------gh---~~~v~avaFspd-g~llaS~s 339 (485)
.++.++ ++++.+-- ....|-..|..||+....+. .+ .+-.+.+|+.|+ +++++||.
T Consensus 178 NELE~i---~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 178 NELEYI---NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEE---TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred EeEEEE---cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 466665 57777764 44566667999999877641 11 356899999665 55667764
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.4 Score=55.40 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=91.9
Q ss_pred CeeEEEEecCCCeEEEEeecCCcc-eeEEEE----EecCCCEEEEEeCCCcEEEEECCCC-e-eEEecccC----CCceE
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHR-NKKVDF----IEQFNEKLLVKQENENLQILDVRNF-E-LTEVSRTE----FMTPS 324 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~-~~~V~f----~~~~~~~lls~s~D~tIkIWDv~tg-~-~~~~l~gh----~~~v~ 324 (485)
...|.-.||++|+++...+-|-.. +..++- ....++....|=.++.|-.||.+-. . ++. ..+| .....
T Consensus 503 ~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~k~Y~~~~~Fs 581 (794)
T PF08553_consen 503 PNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQSKQYSSKNNFS 581 (794)
T ss_pred CCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee-ccccccccCCCce
Confidence 467888999999999998854322 333321 1112466777778999999999853 2 332 1222 33567
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcE-EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~l-l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+++-+-+|.+ |.|+ +|-|||+|--|+- .+.|.|=..+ |..|..|.||++|+..|. ..+-|
T Consensus 582 ~~aTt~~G~i-avgs~~G~IRLyd~~g~~AKT~lp~lG~p-----I~~iDvt~DGkwilaTc~------------tyLlL 643 (794)
T PF08553_consen 582 CFATTEDGYI-AVGSNKGDIRLYDRLGKRAKTALPGLGDP-----IIGIDVTADGKWILATCK------------TYLLL 643 (794)
T ss_pred EEEecCCceE-EEEeCCCcEEeecccchhhhhcCCCCCCC-----eeEEEecCCCcEEEEeec------------ceEEE
Confidence 7888888875 5555 9999999975653 3445554445 899999999999999984 77888
Q ss_pred EeCC
Q 011452 403 SNIL 406 (485)
Q Consensus 403 Wdl~ 406 (485)
.+..
T Consensus 644 i~t~ 647 (794)
T PF08553_consen 644 IDTL 647 (794)
T ss_pred EEEe
Confidence 8753
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.04 Score=58.34 Aligned_cols=126 Identities=10% Similarity=0.032 Sum_probs=85.2
Q ss_pred EEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
++..+..+-+.+.-+.+|...++.++|++...+.+..++-+.+|+|-|+++..+......| ..+|+.+|--|...++-+
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYa 253 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYA 253 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEE
Confidence 4445444444455555666778899998543446777899999999999999999988888 689999998888888877
Q ss_pred e--CCcEEEEeCC-C-cEEEEeecCCCCCCCCC---eeEEEECCCCCEEEEEec
Q 011452 339 R--NRTVAVWNFR-G-ELVTSFEDHLLWHPDCN---TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 339 s--D~TIklWd~~-G-~ll~tl~gH~~~~~~~~---v~svafSpDG~~LaS~s~ 385 (485)
+ +|.|-|+|++ - ..+..|.+...-+|-+. +..-.+.+-|-+|+..+.
T Consensus 254 Gl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt 307 (463)
T KOG1645|consen 254 GLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT 307 (463)
T ss_pred eccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh
Confidence 7 9999999995 2 24444444221111100 111244556667766554
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.034 Score=58.89 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=63.9
Q ss_pred eecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
+.+|... |++++|||... +|..++. +++|||-|+.|-.++.....|.
T Consensus 189 lp~~g~~-----IrdlafSp~~~GLl~~asl-----------~nkiki~dlet~~~vssy~a~~---------------- 236 (463)
T KOG1645|consen 189 LPGEGSF-----IRDLAFSPFNEGLLGLASL-----------GNKIKIMDLETSCVVSSYIAYN---------------- 236 (463)
T ss_pred ccccchh-----hhhhccCccccceeeeecc-----------CceEEEEecccceeeeheeccC----------------
Confidence 4455555 89999999998 7888876 7999999999999999998875
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.+|+.+|+-|. +.||.|-..|.|-|+|.
T Consensus 237 -----------------------~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 237 -----------------------QIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred -----------------------CceeeeeccCCcceeEEeccCceEEEEEc
Confidence 78999998764 67999999999999873
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=95.19 E-value=1.4 Score=46.11 Aligned_cols=81 Identities=15% Similarity=0.180 Sum_probs=49.6
Q ss_pred cEEEEECCC--Ce--eEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCC------c---EEEEeecCCC-CCCCC
Q 011452 301 NLQILDVRN--FE--LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG------E---LVTSFEDHLL-WHPDC 366 (485)
Q Consensus 301 tIkIWDv~t--g~--~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G------~---ll~tl~gH~~-~~~~~ 366 (485)
.|.+++-.+ |. ..+++......+..++|.++| ++++..+...++.|.+| + ++..|..... .| -
T Consensus 48 rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~--~ 124 (367)
T TIGR02604 48 RILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHH--H 124 (367)
T ss_pred EEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCccc--c
Confidence 677776543 33 234444445578999999999 88775566555667643 2 2333433200 01 1
Q ss_pred CeeEEEECCCCCEEEEEe
Q 011452 367 NTNNIYITSDQDLIISYC 384 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s 384 (485)
..+.++|.|||.+.++-+
T Consensus 125 ~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred cccCceECCCCCEEEecc
Confidence 167899999999988765
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.43 Score=49.45 Aligned_cols=63 Identities=21% Similarity=0.309 Sum_probs=43.9
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcE---EEEeecCCCCCCCCCeeEEEECCC----CCEEEEEec
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGEL---VTSFEDHLLWHPDCNTNNIYITSD----QDLIISYCK 385 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~G~l---l~tl~gH~~~~~~~~v~svafSpD----G~~LaS~s~ 385 (485)
.+++++|.|||++|++-..|+|.+.+.+|.. +..+..-. .........|+|.|+ +.+-++++.
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~-~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVF-ADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTB-TSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceeccccccc-ccccCCcccceeccccCCCCEEEEEEEc
Confidence 6899999999999998779999999966665 44442111 111233789999995 888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.7 Score=43.03 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=112.1
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEE----------EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQ----------EIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~----------~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
+|.+.+ ++.++.|.=.|+++|+++-+..- ..+. .+++.. ++++.+ ..|..|.-.|.+||+++
T Consensus 69 ~g~vyv-~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~-~~v~v~---t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYV-TTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYD-GKVFFG---TLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEE-ECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEEC-CEEEEE---cCCCEEEEEECCCCCEE
Confidence 565555 34466777778888888766531 1121 234443 444443 23468888899999999
Q ss_pred EEeecCCcc-eeEEEEEe-cCCCEEEEEe------CCCcEEEEECCCCeeEEeccc---C--------------------
Q 011452 271 KSFNHLLHR-NKKVDFIE-QFNEKLLVKQ------ENENLQILDVRNFELTEVSRT---E-------------------- 319 (485)
Q Consensus 271 ~tl~~~~~~-~~~V~f~~-~~~~~lls~s------~D~tIkIWDv~tg~~~~~l~g---h-------------------- 319 (485)
-.+...... -..+.-.+ ..+++++++. .++.|.-.|++||+.+-.... .
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw 223 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTW 223 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCC
Confidence 876521111 01111100 1256777763 278999999999997654311 1
Q ss_pred --------CCceEE-EEEcCCCcEEEEEe-C-----C-----------cEEEEeCC-CcEEEEee--cCCCCCCCCCeeE
Q 011452 320 --------FMTPSA-FIFLYENQLFLTFR-N-----R-----------TVAVWNFR-GELVTSFE--DHLLWHPDCNTNN 370 (485)
Q Consensus 320 --------~~~v~a-vaFspdg~llaS~s-D-----~-----------TIklWd~~-G~ll~tl~--gH~~~~~~~~v~s 370 (485)
...+|. .++-|+..++--+. + + .|--=|.+ ||++-.|. -|..|+.+..-..
T Consensus 224 ~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p 303 (527)
T TIGR03075 224 PGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEM 303 (527)
T ss_pred CCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCc
Confidence 112222 24445444443332 2 1 33344564 88865554 5777876643233
Q ss_pred EEEC--CCCC---EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 371 IYIT--SDQD---LIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 371 vafS--pDG~---~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
+-+. .||+ .++-+.+ +|-+-+-|-.|||.+.
T Consensus 304 ~l~d~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 304 ILFDLKKDGKPRKLLAHADR-----------NGFFYVLDRTNGKLLS 339 (527)
T ss_pred EEEEeccCCcEEEEEEEeCC-----------CceEEEEECCCCceec
Confidence 3343 5887 7778877 7999999999999873
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.80 E-value=1.8 Score=50.29 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=85.4
Q ss_pred EEEEE-eCCCcEEEEECCCCeeEEecccCCCc-eEEEEEcC--------CCcEEEEEeCCcEEEEeCC--Cc-EEEEeec
Q 011452 292 KLLVK-QENENLQILDVRNFELTEVSRTEFMT-PSAFIFLY--------ENQLFLTFRNRTVAVWNFR--GE-LVTSFED 358 (485)
Q Consensus 292 ~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~-v~avaFsp--------dg~llaS~sD~TIklWd~~--G~-ll~tl~g 358 (485)
.|+.. ...+.|.--|+.+|+.++...-|.+. |..+ -| ..+.|+--+++.+-.||.+ |. ++. -+.
T Consensus 495 mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~-~~~ 571 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD-SQS 571 (794)
T ss_pred eEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceee-ccc
Confidence 33443 46788999999999999998877765 4444 34 3456766678888999986 53 443 234
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCcccccCCCCCCCCc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK-IRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t-l~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
|+- .......++|-+.+|. ||-||. +|-|||+| ..|+--+| |.|-.
T Consensus 572 k~Y-~~~~~Fs~~aTt~~G~-iavgs~-----------~G~IRLyd-~~g~~AKT~lp~lG------------------- 618 (794)
T PF08553_consen 572 KQY-SSKNNFSCFATTEDGY-IAVGSN-----------KGDIRLYD-RLGKRAKTALPGLG------------------- 618 (794)
T ss_pred ccc-ccCCCceEEEecCCce-EEEEeC-----------CCcEEeec-ccchhhhhcCCCCC-------------------
Confidence 432 2233367888888886 455665 79999999 44543222 22211
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
.+|..|..+.||++|+...
T Consensus 619 -------------------~pI~~iDvt~DGkwilaTc 637 (794)
T PF08553_consen 619 -------------------DPIIGIDVTADGKWILATC 637 (794)
T ss_pred -------------------CCeeEEEecCCCcEEEEee
Confidence 2888999999999865443
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.79 E-value=4.9 Score=40.08 Aligned_cols=169 Identities=14% Similarity=0.097 Sum_probs=94.5
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.+.+.+.|+||+.+|.++. .++ ...|+-.+.|... ..+.+...+. .-.|+ ++|.+.+....+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~--~~~-------~~~L~~~~~~~~~--~~~~~g~~l~---~PS~d-~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE--GDG-------GRSLYVGPAGGPV--RPVLTGGSLT---RPSWD-PDGWVWTVDDGSGGV 89 (253)
T ss_pred cccceEECCCCCeEEEEEE--cCC-------CCEEEEEcCCCcc--eeeccCCccc---ccccc-CCCCEEEEEcCCCce
Confidence 5899999999999998772 222 2333333333321 1122222233 44676 689998888888888
Q ss_pred EEee-cCCCeEE-EEE--cC-C-cEEEEEEcCCceEEEEEcCC-CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 218 KVFD-LKNYTML-YSI--SD-K-NVQEIKISPGIMLLIFTKAS-GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 218 KlWd-l~~g~~l-~tl--~~-~-~V~~VafSpg~~ll~sss~~-~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
+++. ..+++.. ..+ .. . .|.++++||+|..++.-..+ .+..|.+ +-+..
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~v----------------------a~V~r-- 145 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYV----------------------AGVVR-- 145 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEE----------------------EEEEe--
Confidence 8884 4455432 222 21 2 79999999876665442211 1111111 00101
Q ss_pred CEEEEEeCCC-cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEE-EeCCCcEEEEe
Q 011452 291 EKLLVKQENE-NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAV-WNFRGELVTSF 356 (485)
Q Consensus 291 ~~lls~s~D~-tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIkl-Wd~~G~ll~tl 356 (485)
..++ ... -...++........+.+++|.+++.+++-+. +..+.. ....|-....+
T Consensus 146 ------~~~g~~~~-----l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~~~~~l 204 (253)
T PF10647_consen 146 ------DGDGVPRR-----LTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGGPSTPL 204 (253)
T ss_pred ------CCCCCcce-----eccceEecccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCCccccc
Confidence 1222 111 1233344444556889999999999988887 554544 55566555554
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=94.76 E-value=1.5 Score=45.98 Aligned_cols=141 Identities=14% Similarity=0.057 Sum_probs=79.2
Q ss_pred cEEEEEEcCCceEEEEEcC---------CCC-eeEEEEecC--CCeE--EEEeecCCcceeEEEEEecCCCEEEEEeCCC
Q 011452 235 NVQEIKISPGIMLLIFTKA---------SGH-VPLKILSIE--DGTV--LKSFNHLLHRNKKVDFIEQFNEKLLVKQENE 300 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~---------~~D-~tIklWdi~--tG~~--L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~ 300 (485)
....|+|.+.+.+.++... ... ..|.+++-. +|+. ...|...+.....++|. + ++ |.+++.+.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~-~-~G-lyV~~~~~ 91 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVA-V-GG-VYVATPPD 91 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEe-c-CC-EEEeCCCe
Confidence 3456777776666555321 001 156566543 3553 24454434555678875 3 34 77776666
Q ss_pred cEEEEECCCC-----e---eEEeccc----CCCceEEEEEcCCCcEEEEEeC--------------------CcEEEEeC
Q 011452 301 NLQILDVRNF-----E---LTEVSRT----EFMTPSAFIFLYENQLFLTFRN--------------------RTVAVWNF 348 (485)
Q Consensus 301 tIkIWDv~tg-----~---~~~~l~g----h~~~v~avaFspdg~llaS~sD--------------------~TIklWd~ 348 (485)
-.++.|.... + ++..+.. +...+..++|.|||.+.++-++ +.|--+|.
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p 171 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP 171 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence 5556665421 2 2222322 2456889999999999886652 22333344
Q ss_pred CCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 349 RGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 349 ~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
+|..+..+ .|+. +.+.++|+|+|+++++-.
T Consensus 172 dg~~~e~~a~G~r------np~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 172 DGGKLRVVAHGFQ------NPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CCCeEEEEecCcC------CCccceECCCCCEEEEcc
Confidence 44433333 2332 257899999999988744
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=94.66 E-value=5.8 Score=40.35 Aligned_cols=60 Identities=20% Similarity=0.246 Sum_probs=36.5
Q ss_pred CCEEEEEeCCCcEEEE--ECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 290 NEKLLVKQENENLQIL--DVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 290 ~~~lls~s~D~tIkIW--Dv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
+.+++++-.-+.|.++ +-+..++...-+. ...++.++.|.+|++.++.+. +|.|.++...
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 4577777666666655 3332333333222 345788999997777777777 9999988753
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.013 Score=67.03 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=67.9
Q ss_pred eCCCcEEEEECCCCeeEEecccCCCceEEEEE-----------cCCCcEEEEEe-CCcEEEEeC--CCc----EEEEeec
Q 011452 297 QENENLQILDVRNFELTEVSRTEFMTPSAFIF-----------LYENQLFLTFR-NRTVAVWNF--RGE----LVTSFED 358 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF-----------spdg~llaS~s-D~TIklWd~--~G~----ll~tl~g 358 (485)
-.|++|+|.++.+.+. ..+++|..++..++| ||||+.||.++ ||.++.|.. .|+ |+...+-
T Consensus 202 ~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp 280 (1283)
T KOG1916|consen 202 LKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP 280 (1283)
T ss_pred cCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC
Confidence 3789999998876544 566778877776665 99999999999 999999997 365 5556666
Q ss_pred CCCCCCCCCeeEEEECCC---------CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 359 HLLWHPDCNTNNIYITSD---------QDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 359 H~~~~~~~~v~svafSpD---------G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
|... |. |-.+ |..+ =+++|++++. ..-+|+|.-..-+|+
T Consensus 281 hd~~-p~--vC~l-c~~~~~~~v~i~~w~~~Itttd~----------nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 281 HDKH-PR--VCWL-CHKQEILVVSIGKWVLRITTTDV----------NREEKFWAEAPWQCL 328 (1283)
T ss_pred CCCC-Cc--eeee-eccccccCCccceeEEEEecccC----------CcceeEeeccchhhh
Confidence 6521 11 2222 2111 1456666541 356899987777787
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.3 Score=47.10 Aligned_cols=199 Identities=10% Similarity=0.029 Sum_probs=116.7
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEcC--Cc-EEEEEEcCCceEEEEEcCCCC---eeEEEEecCCC----
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISD--KN-VQEIKISPGIMLLIFTKASGH---VPLKILSIEDG---- 267 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~~--~~-V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG---- 267 (485)
.++ ++|..+|-|+.||-| |-+..+- .++.+.. +. |+-+..-.+.-+|.+-..|.. ..|||||++.-
T Consensus 30 c~~-s~~~~vvigt~~G~V--~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 30 CCS-SSTGSVVIGTADGRV--VILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred EEc-CCCceEEEeeccccE--EEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 465 688888999988865 4444443 4455542 33 444444455455555544432 26999998732
Q ss_pred --eEEEEe--ecCCcc-----eeEEEEEecCCCEEEEEeCCCcEEEEE--CCC--CeeEEecccCCCceEEEEEcCCCcE
Q 011452 268 --TVLKSF--NHLLHR-----NKKVDFIEQFNEKLLVKQENENLQILD--VRN--FELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 268 --~~L~tl--~~~~~~-----~~~V~f~~~~~~~lls~s~D~tIkIWD--v~t--g~~~~~l~gh~~~v~avaFspdg~l 334 (485)
+|+.+. -.|..+ ...++.+ .+-..+++|=.||.|-+.- +.. |............|+.++|..|++.
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs-~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVS-EDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEE-ccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 344211 122122 2345544 4445555566889988873 322 2222222234568999999999998
Q ss_pred EEEEe-CCcEEEEeCCCcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 335 FLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
++=.. -..|.++.++|+- +.++..|... ++...|++--.-++.++ ..-|-++|..--+.-
T Consensus 186 ~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~-----lnCss~~~~t~qfIca~------------~e~l~fY~sd~~~~c 248 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLSGRTPSLKVLDNNGIS-----LNCSSFSDGTYQFICAG------------SEFLYFYDSDGRGPC 248 (933)
T ss_pred eEEEEecceeEEEEecCCCcceeeeccCCcc-----ceeeecCCCCccEEEec------------CceEEEEcCCCccee
Confidence 43233 6679999998665 6677777655 77788877544344444 256788876543333
Q ss_pred EEec-CCC
Q 011452 412 AKIR-ASN 418 (485)
Q Consensus 412 ~tl~-gH~ 418 (485)
.++. ||.
T Consensus 249 faf~~g~k 256 (933)
T KOG2114|consen 249 FAFEVGEK 256 (933)
T ss_pred eeecCCCe
Confidence 4555 665
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.1 Score=44.26 Aligned_cols=169 Identities=12% Similarity=0.155 Sum_probs=98.3
Q ss_pred EEEeCCCCeEEE-EeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 198 VEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 198 V~Fs~pnG~~La-s~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
-+|...||++=+ .-+. .|+++..+. ...-..|+|+|-- .-++.+..-+ .-..++|..+++.+.++.
T Consensus 40 saf~~~dgs~g~a~~~e----------aGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPG-tf~~vfD~~~~~~pv~~~ 108 (366)
T COG3490 40 SAFDARDGSFGAATLSE----------AGKIVFATALPARGHGIAFHPALPRAVAFARRPG-TFAMVFDPNGAQEPVTLV 108 (366)
T ss_pred eeeeccCCceeEEEEcc----------CCceeeeeecccccCCeecCCCCcceEEEEecCC-ceEEEECCCCCcCcEEEe
Confidence 367677787633 3333 455554432 2223345666522 2222233221 345577888888888775
Q ss_pred cCCccee--EEEEEecCCCEEEEEeCC-----CcEEEEECCCCe-eEEecccCCCceEEEEEcCCCcEEEEEeCCcEE--
Q 011452 275 HLLHRNK--KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFE-LTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVA-- 344 (485)
Q Consensus 275 ~~~~~~~--~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~-~~~~l~gh~~~v~avaFspdg~llaS~sD~TIk-- 344 (485)
.-.++-+ -=.|+ |||..|-++-.| +-|=|||.+.+- .+-.+.+|...+-.+.+.+||++++-+. |-|+
T Consensus 109 s~~~RHfyGHGvfs-~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan-GGIeth 186 (366)
T COG3490 109 SQEGRHFYGHGVFS-PDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN-GGIETH 186 (366)
T ss_pred cccCceeecccccC-CCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC-Cceecc
Confidence 3222211 12354 778777776433 789999999653 3445678888889999999999998664 3233
Q ss_pred ------------------EEe-CCCcEEEEeecCCCC--CCCCCeeEEEECCCCCEEEE
Q 011452 345 ------------------VWN-FRGELVTSFEDHLLW--HPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 345 ------------------lWd-~~G~ll~tl~gH~~~--~~~~~v~svafSpDG~~LaS 382 (485)
+-| .+|+++ +.|.+. ...-.|+-+++-+||..++-
T Consensus 187 pdfgR~~lNldsMePSlvlld~atG~li---ekh~Lp~~l~~lSiRHld~g~dgtvwfg 242 (366)
T COG3490 187 PDFGRTELNLDSMEPSLVLLDAATGNLI---EKHTLPASLRQLSIRHLDIGRDGTVWFG 242 (366)
T ss_pred cccCccccchhhcCccEEEEeccccchh---hhccCchhhhhcceeeeeeCCCCcEEEE
Confidence 334 245543 334332 11122899999999987664
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.18 Score=59.10 Aligned_cols=71 Identities=14% Similarity=0.155 Sum_probs=51.0
Q ss_pred EEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 335 FLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 335 laS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++-++ -|.|-+-|.+|.+-. -|.+-+....|.+++|+.||.+++-|-. +|-|.+||+.+++.++.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~-----------~G~V~v~D~~~~k~l~~ 167 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGP---LHQNERVQGPVTSVAFNQDGSLLLAGLG-----------DGHVTVWDMHRAKILKV 167 (1206)
T ss_pred EEEEcCchhhhhhhhhcccch---hhcCCccCCcceeeEecCCCceeccccC-----------CCcEEEEEccCCcceee
Confidence 44444 455556666555322 1333333345999999999999998875 79999999999999999
Q ss_pred ecCCCC
Q 011452 414 IRASNG 419 (485)
Q Consensus 414 l~gH~~ 419 (485)
|..|..
T Consensus 168 i~e~~a 173 (1206)
T KOG2079|consen 168 ITEHGA 173 (1206)
T ss_pred eeecCC
Confidence 988863
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=93.94 E-value=3.2 Score=45.38 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=59.6
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe--EEEEeec-----CCcceeEEEEEecC-----CCEEEEEe-C--
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT--VLKSFNH-----LLHRNKKVDFIEQF-----NEKLLVKQ-E-- 298 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~--~L~tl~~-----~~~~~~~V~f~~~~-----~~~lls~s-~-- 298 (485)
..-++|+|.|++.++++.... +.|++++-.++. .+..+.. -+.....|+|.|.+ +.+|-+.. .
T Consensus 30 ~~Pw~maflPDG~llVtER~~--G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~ 107 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERAT--GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKN 107 (454)
T ss_pred CCceEEEEcCCCeEEEEEecC--CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccC
Confidence 356899999988888875422 689999866553 2222221 13445689987544 23444431 1
Q ss_pred -C----CcEEE--EECCC--C------eeEEecc-cCCCceEEEEEcCCCcEEEEEeCC
Q 011452 299 -N----ENLQI--LDVRN--F------ELTEVSR-TEFMTPSAFIFLYENQLFLTFRNR 341 (485)
Q Consensus 299 -D----~tIkI--WDv~t--g------~~~~~l~-gh~~~v~avaFspdg~llaS~sD~ 341 (485)
+ ..-+| |.+.. . .++..+. +..+.-..++|.|||.|+++.+|+
T Consensus 108 ~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 108 GDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1 12344 44431 1 1122121 111234678899999999988855
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=5.7 Score=41.20 Aligned_cols=183 Identities=16% Similarity=0.244 Sum_probs=111.0
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.|-++.|||+-++|.++-. . ...-+|=-.+|++....+|-. +.-+..+++- -+|++.++.=.|+++
T Consensus 87 nvS~LTynp~~rtLFav~n----~------p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyi-g~n~fvi~dER~~~l 152 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVTN----K------PAAIVELTKEGDLIRTIPLTG---FSDPETIEYI-GGNQFVIVDERDRAL 152 (316)
T ss_pred cccceeeCCCcceEEEecC----C------CceEEEEecCCceEEEecccc---cCChhHeEEe-cCCEEEEEehhcceE
Confidence 4999999999999998652 1 233344336898865555433 3456678887 589999988889999
Q ss_pred EEeecCCCeEEEE-------Ec-----CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE---EEeecCC----
Q 011452 218 KVFDLKNYTMLYS-------IS-----DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL---KSFNHLL---- 277 (485)
Q Consensus 218 KlWdl~~g~~l~t-------l~-----~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L---~tl~~~~---- 277 (485)
-+..+...+.+.. |. ...-..+|+.| +.++..+ ..- .|++|..++.+.-. +....++
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~a-KEr--~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVA-KER--NPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEE-Ecc--CCcEEEEEecCCcccccccccCcccccc
Confidence 9998876643222 21 12467899998 5666555 333 68888877543311 1111111
Q ss_pred ---cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---cc------CCCceEEEEEcCCCcEEEEE
Q 011452 278 ---HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RT------EFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 278 ---~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~g------h~~~v~avaFspdg~llaS~ 338 (485)
.-+.++.|.++.+..|+-+.+++-+.--|.. |+.+..+ .| .-.....|+..++|.+-+.+
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS 301 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS 301 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence 1234666765544444457788888887776 4433332 11 12244556666666655544
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=93.69 E-value=7.4 Score=40.19 Aligned_cols=66 Identities=6% Similarity=0.209 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCcEEEEEe-C------CcEEEEeCCCcEEEEee---cC-------CCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 322 TPSAFIFLYENQLFLTFR-N------RTVAVWNFRGELVTSFE---DH-------LLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D------~TIklWd~~G~ll~tl~---gH-------~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
...++++.++|.+++|+- + ..|.-.+.+|+.+..+. .. ..+..+....+++++|||+.|..+.
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 566899999999999998 8 88888888898877662 22 3345566689999999999888887
Q ss_pred cCC
Q 011452 385 KAD 387 (485)
Q Consensus 385 ~d~ 387 (485)
..+
T Consensus 166 E~~ 168 (326)
T PF13449_consen 166 ESP 168 (326)
T ss_pred Ccc
Confidence 655
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.48 E-value=2 Score=49.69 Aligned_cols=106 Identities=8% Similarity=0.197 Sum_probs=69.8
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC-cEEEEEe-CC-----cEEEEeCC----Cc---E
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NR-----TVAVWNFR----GE---L 352 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~-----TIklWd~~----G~---l 352 (485)
.+.++.++.|+.||.|-+.|-. -+.++-+..+...+-.+...-++ .+|+|-. |. +|||||++ ++ |
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c 110 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQC 110 (933)
T ss_pred cCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcce
Confidence 3557888889999988888754 44446666666554344444455 4666666 44 69999983 22 4
Q ss_pred E--EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 353 V--TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 353 l--~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+ ..+..|..+..-..+..|++|.|=+.||.|-. +|+|-...
T Consensus 111 ~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~-----------nG~V~~~~ 153 (933)
T KOG2114|consen 111 LYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFT-----------NGLVICYK 153 (933)
T ss_pred eeeeeeeccCCCCCCCcceEEEEEccccEEEEEec-----------CcEEEEEc
Confidence 4 24445554422234788999999999999876 68887763
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.36 Score=56.62 Aligned_cols=93 Identities=11% Similarity=0.109 Sum_probs=64.8
Q ss_pred CEEEEEeCCCcEEEEECCCCee-EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 291 EKLLVKQENENLQILDVRNFEL-TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 291 ~~lls~s~D~tIkIWDv~tg~~-~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
.-+++++.-+.+-+-|+.+..+ ...-..-+.+|.+++|+.||.+++-|= +|.|++||.+ ++.++-++.|..++..
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~-- 177 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG-- 177 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce--
Confidence 3455566666666666553221 011112346899999999999999887 9999999996 8999999988866433
Q ss_pred eeEEEECCCCCEEEEEec
Q 011452 368 TNNIYITSDQDLIISYCK 385 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~ 385 (485)
|--+-.+.++..+.++..
T Consensus 178 vi~v~~t~~nS~llt~D~ 195 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDT 195 (1206)
T ss_pred EEEEEEeCCCcEEEEccC
Confidence 555666677777777643
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=93.24 E-value=5.4 Score=35.60 Aligned_cols=99 Identities=10% Similarity=0.094 Sum_probs=60.7
Q ss_pred cEEEEEEcC----C-ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC
Q 011452 235 NVQEIKISP----G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 235 ~V~~VafSp----g-~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t 309 (485)
+|.++++++ | ..|+++ + .|..||+++ ..+++..++.. +.+..+.-+ .+++++.+-++|||-+++-..
T Consensus 1 ~V~al~~~d~d~dg~~eLlvG-s--~D~~IRvf~--~~e~~~Ei~e~-~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 1 NVTALCLFDFDGDGENELLVG-S--DDFEIRVFK--GDEIVAEITET-DKVTSLCSL--GGGRFAYALANGTVGVYDRSQ 72 (111)
T ss_pred CeeEEEEEecCCCCcceEEEe-c--CCcEEEEEe--CCcEEEEEecc-cceEEEEEc--CCCEEEEEecCCEEEEEeCcc
Confidence 477888874 2 345554 3 458999998 44688888743 455555543 357888888999998887643
Q ss_pred CeeEEecccCCCceEEEEEcC-CC---cEEEEEe-CCcEE
Q 011452 310 FELTEVSRTEFMTPSAFIFLY-EN---QLFLTFR-NRTVA 344 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFsp-dg---~llaS~s-D~TIk 344 (485)
..-.-- -...+.++++.+ +| .-|++|. +|.|.
T Consensus 73 RlWRiK---SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIK---SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeec---cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 322211 122466665433 32 2467776 88764
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.44 Score=53.66 Aligned_cols=115 Identities=14% Similarity=0.084 Sum_probs=80.1
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
...|.--++.-.++.++-|+ -|.+-|++-.|.. +...++-.. .+..+.+|++-++.|.|+.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-----~~~~~~vs~~e~lvAagt~----------- 96 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-----ITCVRSVSSVEYLVAAGTA----------- 96 (726)
T ss_pred cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccc-----eEEEEEecchhHhhhhhcC-----------
Confidence 34555556788888999898 8999999997443 334444322 2677889999999888875
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC
Q 011452 397 AGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR 476 (485)
Q Consensus 397 DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~ 476 (485)
.|-|-+.-+..++ . ++..|...|++. | + ..|+++.||+|+..+|+|..
T Consensus 97 ~g~V~v~ql~~~~-----p-------------~~~~~~t~~d~~-~--~-----------~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 97 SGRVSVFQLNKEL-----P-------------RDLDYVTPCDKS-H--K-----------CRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CceEEeehhhccC-----C-------------Ccceeecccccc-C--C-----------ceEEEEEecccccEEeecCC
Confidence 4777666554311 1 122344445443 2 1 28999999999999999999
Q ss_pred CCcEEE
Q 011452 477 HGLVHV 482 (485)
Q Consensus 477 DgtVkl 482 (485)
-|+|.+
T Consensus 145 ~Gkv~~ 150 (726)
T KOG3621|consen 145 QGKVVL 150 (726)
T ss_pred CceEEE
Confidence 999975
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.32 Score=48.40 Aligned_cols=104 Identities=9% Similarity=0.048 Sum_probs=63.9
Q ss_pred CCEEEEEeCCCcEEEEECCC-CeeE-EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRN-FELT-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 365 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~t-g~~~-~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~ 365 (485)
+.+++++..|+.|.+|+..- |... ....+......-|.-..++.+..++. |+-|+.|+.. ++-+-.--.|..-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~--- 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE--- 146 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC---
Confidence 46788899999999998761 1111 11112222333343455666777777 9999999997 7766655555521
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
. +.....+.-+..|+++- -|.|..+|.||+.
T Consensus 147 ~-~e~~ivv~sd~~i~~a~---------~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 147 S-GEELIVVGSDEFLKIAD---------TSHDRVLKKWNVE 177 (238)
T ss_pred C-cceeEEecCCceEEeec---------cccchhhhhcchh
Confidence 1 33444455556666661 1337888888875
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.31 E-value=8.8 Score=39.87 Aligned_cols=205 Identities=14% Similarity=0.117 Sum_probs=113.4
Q ss_pred EEEEeCCCCeEEEEeeCCCcE-EEeecCCCeEEEEEc---C-CcEEEEEEcCCceEEEEEcCCCC---eeEEEEecCCCe
Q 011452 197 FVEFDDVNGKVLTYSAQDSIY-KVFDLKNYTMLYSIS---D-KNVQEIKISPGIMLLIFTKASGH---VPLKILSIEDGT 268 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~ti-KlWdl~~g~~l~tl~---~-~~V~~VafSpg~~ll~sss~~~D---~tIklWdi~tG~ 268 (485)
.++|+|.-...++.+=.-+|. .|+|..+.++..++. + |.---=.|||++.+|.+...|.| +.|-|+|...+-
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 456665555556655555554 488988888777664 1 11111249999988877665554 678888875431
Q ss_pred -EEEEeecCCcceeEEEEEecCCCEEEEEeC------C------------CcEEEEECCCCeeEE--ecc--cCCCceEE
Q 011452 269 -VLKSFNHLLHRNKKVDFIEQFNEKLLVKQE------N------------ENLQILDVRNFELTE--VSR--TEFMTPSA 325 (485)
Q Consensus 269 -~L~tl~~~~~~~~~V~f~~~~~~~lls~s~------D------------~tIkIWDv~tg~~~~--~l~--gh~~~v~a 325 (485)
.+-.+..|.-.--.|.+. +||..+++... | -.+-+.|..+|++++ +|. -|...+.-
T Consensus 152 qrvgE~~t~GiGpHev~lm-~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLM-ADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred ceecccccCCcCcceeEEe-cCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 223444432222367765 67777777521 1 246778888888765 333 34445666
Q ss_pred EEEcCCCcEEEEEe-CC-----cEEEEeCC-CcEEEEeecCCC-C-CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 326 FIFLYENQLFLTFR-NR-----TVAVWNFR-GELVTSFEDHLL-W-HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 326 vaFspdg~llaS~s-D~-----TIklWd~~-G~ll~tl~gH~~-~-~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
++.-+||+.+.-+- -| ---|=-+. |+.++-|.--.. | --..+|-+|+.+.+-.+++-.|. .
T Consensus 231 ld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP----------~ 300 (366)
T COG3490 231 LDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSP----------R 300 (366)
T ss_pred eeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecC----------C
Confidence 66666665444331 11 00000111 443332221000 0 00012778999876666665554 2
Q ss_pred CCeEEEEeCCCCeEEE
Q 011452 397 AGSINISNILTGKCLA 412 (485)
Q Consensus 397 DgtIklWdl~TGk~l~ 412 (485)
-+..-+||..||..+.
T Consensus 301 GN~~vi~da~tG~vv~ 316 (366)
T COG3490 301 GNRAVIWDAATGAVVS 316 (366)
T ss_pred CCeEEEEEcCCCcEEe
Confidence 4567899999998764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.3 Score=56.13 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=71.3
Q ss_pred EcCCCcEEEEEe-----CCcEEEEeCCCcEEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 328 FLYENQLFLTFR-----NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 328 Fspdg~llaS~s-----D~TIklWd~~G~ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
|.|-..+||.++ .|.|-|+--+||.-+..+ -| +.++++.|.--.|++|=. -|-+
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h--------atSLCWHpe~~vLa~gwe-----------~g~~ 83 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH--------ATSLCWHPEEFVLAQGWE-----------MGVS 83 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee--------hhhhccChHHHHHhhccc-----------ccee
Confidence 444444444332 467888877788544222 22 678999999888888754 5889
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 401 NISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
-+|+..+.+--.....|. .+|..|.|||||..|.|+..=|.|
T Consensus 84 ~v~~~~~~e~htv~~th~--------------------------------------a~i~~l~wS~~G~~l~t~d~~g~v 125 (1416)
T KOG3617|consen 84 DVQKTNTTETHTVVETHP--------------------------------------APIQGLDWSHDGTVLMTLDNPGSV 125 (1416)
T ss_pred EEEecCCceeeeeccCCC--------------------------------------CCceeEEecCCCCeEEEcCCCcee
Confidence 999876544332333343 388999999999999999999999
Q ss_pred EEcc
Q 011452 481 HVWS 484 (485)
Q Consensus 481 klWd 484 (485)
++|+
T Consensus 126 ~lwr 129 (1416)
T KOG3617|consen 126 HLWR 129 (1416)
T ss_pred EEEE
Confidence 9996
|
|
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=91.89 E-value=5.4 Score=43.61 Aligned_cols=72 Identities=22% Similarity=0.221 Sum_probs=47.1
Q ss_pred EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCC-------CEEEE
Q 011452 314 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQ-------DLIIS 382 (485)
Q Consensus 314 ~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG-------~~LaS 382 (485)
+++......+++++|.|||++|++-. .|.|++++-. +. .+..+..-..-........|+|+||= .+-++
T Consensus 23 ~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 23 KVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred EEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 34445567899999999999999998 6999999864 32 33333211000001237899999984 35566
Q ss_pred Eec
Q 011452 383 YCK 385 (485)
Q Consensus 383 ~s~ 385 (485)
++.
T Consensus 103 yt~ 105 (454)
T TIGR03606 103 YTY 105 (454)
T ss_pred Eec
Confidence 654
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=18 Score=37.50 Aligned_cols=147 Identities=11% Similarity=0.032 Sum_probs=84.9
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.+..++++ |+|.+++.+..-..++.+|- .++ .+.+-....+.++++.|++.+++.+.. +.+.+=+...|+.-
T Consensus 174 ~~~~i~~~-~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~---G~~~~~s~d~G~sW 248 (334)
T PRK13684 174 VVRNLRRS-PDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARG---GQIRFNDPDDLESW 248 (334)
T ss_pred eEEEEEEC-CCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEecC---CEEEEccCCCCCcc
Confidence 44568887 78888877654444444432 222 222222467899999987666554332 45543234455443
Q ss_pred EEeecC----CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc---cCCCceEEEEEcCCCcEEEEEeCCcE
Q 011452 271 KSFNHL----LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR---TEFMTPSAFIFLYENQLFLTFRNRTV 343 (485)
Q Consensus 271 ~tl~~~----~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~---gh~~~v~avaFspdg~llaS~sD~TI 343 (485)
+...-. ......++|.+ ++.+.+.+.++.|. .-...|+.-+..+ +-....+.+.|..+++.++.+..|+|
T Consensus 249 ~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i 325 (334)
T PRK13684 249 SKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL 325 (334)
T ss_pred ccccCCccccccceeeEEEcC--CCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence 322211 12356788763 34566677777664 3445555433332 11235778889999999998888888
Q ss_pred EEEeC
Q 011452 344 AVWNF 348 (485)
Q Consensus 344 klWd~ 348 (485)
--|+-
T Consensus 326 l~~~~ 330 (334)
T PRK13684 326 LRYVG 330 (334)
T ss_pred EEecC
Confidence 76653
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=91.21 E-value=17 Score=39.08 Aligned_cols=135 Identities=9% Similarity=0.016 Sum_probs=81.1
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeE---EEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-----EEEEe
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-----VLKSF 273 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~-----~L~tl 273 (485)
+||.+++.+..-..++-|| .|.. ..... ...+.++.|.+++.++..... +. -+|+..+|+ .+..+
T Consensus 248 ~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~---G~-l~~S~d~G~~~~~~~f~~~ 321 (398)
T PLN00033 248 PDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG---GG-LYVSKGTGLTEEDFDFEEA 321 (398)
T ss_pred CCCCEEEEECCccEEEecC--CCCcceEEecCCCccceeeeeEcCCCCEEEEeCC---ce-EEEecCCCCcccccceeec
Confidence 6787777776555566665 3321 12222 457899999975555544332 33 356666665 23333
Q ss_pred ecC--CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEeCCcEEEE
Q 011452 274 NHL--LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFRNRTVAVW 346 (485)
Q Consensus 274 ~~~--~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~gh~~~v~avaFspdg~llaS~sD~TIklW 346 (485)
... ...+..|.|. +++.+++.+.+|.+.... ..|+.-+.. ..-....+++.|.++++.++++.+|.|--|
T Consensus 322 ~~~~~~~~l~~v~~~--~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 322 DIKSRGFGILDVGYR--SKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred ccCCCCcceEEEEEc--CCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 211 1125678875 356777888888877764 334432221 122345789999999999999988877543
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=91.01 E-value=21 Score=36.95 Aligned_cols=109 Identities=10% Similarity=-0.003 Sum_probs=58.4
Q ss_pred CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCC---cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 319 EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRG---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s-D~TIklWd~~G---~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
-...+..+..++||+++|.++ -...+-||--. +...... . ..|.++.|+|||.+.+.+ .
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~--~-----~riq~~gf~~~~~lw~~~-~--------- 205 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNS--S-----RRIQSMGFSPDGNLWMLA-R--------- 205 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--S--S-----S-EEEEEE-TTS-EEEEE-T---------
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCc--c-----ceehhceecCCCCEEEEe-C---------
Confidence 345788888899999999888 55556787522 2222221 1 238999999999987765 3
Q ss_pred CCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 395 GNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
.|-|+.-+. ..-..++..+.. .+...+ -.+..|+|.|+.+..|+|
T Consensus 206 --Gg~~~~s~~--~~~~~~w~~~~~------~~~~~~-------------------------~~~ld~a~~~~~~~wa~g 250 (302)
T PF14870_consen 206 --GGQIQFSDD--PDDGETWSEPII------PIKTNG-------------------------YGILDLAYRPPNEIWAVG 250 (302)
T ss_dssp --TTEEEEEE---TTEEEEE---B-------TTSS---------------------------S-EEEEEESSSS-EEEEE
T ss_pred --CcEEEEccC--CCCccccccccC------CcccCc-------------------------eeeEEEEecCCCCEEEEe
Confidence 588888872 223334443321 011111 158899999999888888
Q ss_pred cCCCc
Q 011452 475 NRHGL 479 (485)
Q Consensus 475 s~Dgt 479 (485)
+....
T Consensus 251 g~G~l 255 (302)
T PF14870_consen 251 GSGTL 255 (302)
T ss_dssp STT-E
T ss_pred CCccE
Confidence 76543
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=90.75 E-value=19 Score=35.89 Aligned_cols=141 Identities=12% Similarity=0.065 Sum_probs=81.2
Q ss_pred cEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEeCCCcEEEE-ECCCCe
Q 011452 235 NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQENENLQIL-DVRNFE 311 (485)
Q Consensus 235 ~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW-Dv~tg~ 311 (485)
.+.+.++||++. +++....+....+.++.. |.....+ .+ .....-.|. +++..+.+...+...+++ +..+++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g--~~l~~PS~d-~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTG--GSLTRPSWD-PDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeeccC--Ccccccccc-CCCCEEEEEcCCCceEEEEecCCCc
Confidence 688999997554 444331222356666654 3333332 33 234455554 555555555566666777 344443
Q ss_pred e--EEecccCCC-ceEEEEEcCCCcEEEEEe----CCcEEEEeC----CCc------EEEEeecCCCCCCCCCeeEEEEC
Q 011452 312 L--TEVSRTEFM-TPSAFIFLYENQLFLTFR----NRTVAVWNF----RGE------LVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 312 ~--~~~l~gh~~-~v~avaFspdg~llaS~s----D~TIklWd~----~G~------ll~tl~gH~~~~~~~~v~svafS 374 (485)
. +.+-..... .|.+|.+||||..+|--. ++.|.+=-+ .|. .+....... ..+.+++|.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~-----~~v~~v~W~ 174 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLL-----SDVTDVAWS 174 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccccc-----Ccceeeeec
Confidence 3 333222222 899999999999988665 556655544 241 111111111 127899999
Q ss_pred CCCCEEEEEec
Q 011452 375 SDQDLIISYCK 385 (485)
Q Consensus 375 pDG~~LaS~s~ 385 (485)
+++.+++-+..
T Consensus 175 ~~~~L~V~~~~ 185 (253)
T PF10647_consen 175 DDSTLVVLGRS 185 (253)
T ss_pred CCCEEEEEeCC
Confidence 99999988765
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=90.19 E-value=17 Score=39.76 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=74.9
Q ss_pred CCeEEEEe---eCCCcEEEeecCCCeEEEEEcCCcEEE--EEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-
Q 011452 204 NGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL- 277 (485)
Q Consensus 204 nG~~Las~---s~D~tiKlWdl~~g~~l~tl~~~~V~~--VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~- 277 (485)
+|-++++. ......-+-| .+|.....+....... +.+-++|.+++... ..++..|+ .|++++...--.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~----~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG----NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB----TEEEEE-T-T--EEEEEE--TT
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccceeeEcCCCCEEEecC----CceEEEcC-CCCEEEeeecCCc
Confidence 44455554 2233444445 2455544443222222 55668888877654 58899998 688876654211
Q ss_pred ----cceeEEEEEecCCCEEEEEeC-------------CCcEEEEECCCCeeEEec--ccCC------------------
Q 011452 278 ----HRNKKVDFIEQFNEKLLVKQE-------------NENLQILDVRNFELTEVS--RTEF------------------ 320 (485)
Q Consensus 278 ----~~~~~V~f~~~~~~~lls~s~-------------D~tIkIWDv~tg~~~~~l--~gh~------------------ 320 (485)
|| .+.+. |.|..|+.+.+ .-.|-..| .+|+.+... ..|.
T Consensus 188 ~~~~HH--D~~~l-~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~ 263 (477)
T PF05935_consen 188 YYDFHH--DIDEL-PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISG 263 (477)
T ss_dssp EE-B-S---EEE--TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-
T ss_pred cccccc--ccEEC-CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCccccccccccccccccc
Confidence 22 34443 44555554441 22355556 666655442 1221
Q ss_pred -------CceEEEEEcC-CCcEEEEEe-CCcEEEEeC-CCcEEEEeecCCCCCC
Q 011452 321 -------MTPSAFIFLY-ENQLFLTFR-NRTVAVWNF-RGELVTSFEDHLLWHP 364 (485)
Q Consensus 321 -------~~v~avaFsp-dg~llaS~s-D~TIklWd~-~G~ll~tl~gH~~~~~ 364 (485)
..++++.+.| ++.+++|++ -.+|-..|. +|+++..|-.|..|..
T Consensus 264 ~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~ 317 (477)
T PF05935_consen 264 SGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNG 317 (477)
T ss_dssp SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--T
T ss_pred CCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCc
Confidence 3578999888 899999998 557777886 4999999998888744
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.35 E-value=50 Score=38.61 Aligned_cols=169 Identities=16% Similarity=0.166 Sum_probs=95.9
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc--------eeEEEEEe---------------cCCCEEEEEeCCC
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR--------NKKVDFIE---------------QFNEKLLVKQENE 300 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~--------~~~V~f~~---------------~~~~~lls~s~D~ 300 (485)
|+++.+++ .++.|.=.|.+||+++-.+.-.... .+.|++.. ..+++++.+..|+
T Consensus 194 gg~lYv~t---~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCT---PHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDA 270 (764)
T ss_pred CCEEEEEC---CCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCC
Confidence 55555542 2367888899999999887632211 12344422 1345888888999
Q ss_pred cEEEEECCCCeeEEecccCCCce----------------EEEEEcCCCcEEEEEe----------CCcEEEEeCC-CcEE
Q 011452 301 NLQILDVRNFELTEVSRTEFMTP----------------SAFIFLYENQLFLTFR----------NRTVAVWNFR-GELV 353 (485)
Q Consensus 301 tIkIWDv~tg~~~~~l~gh~~~v----------------~avaFspdg~llaS~s----------D~TIklWd~~-G~ll 353 (485)
.|--.|.+||+.+..+.. ...| .+--.-.++..++.++ ++.|+-.|.+ |+++
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999999998865421 1111 1111122566665443 4789999995 9998
Q ss_pred EEeec-CC----------CCC-CCCCe-eEEEECCCCCEEEEEecCCCCC----CC-C--cCCCCeEEEEeCCCCeEEEE
Q 011452 354 TSFED-HL----------LWH-PDCNT-NNIYITSDQDLIISYCKADSDD----PL-A--EGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 354 ~tl~g-H~----------~~~-~~~~v-~svafSpDG~~LaS~s~d~~~d----~~-~--~~~DgtIklWdl~TGk~l~t 413 (485)
-.+.- +. .|. -..++ ...++.|+-.++.-....+.-| .+ . .--.++|-=-|+.|||.+..
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 87651 10 010 00111 1244555544444332211111 01 0 11246788889999999998
Q ss_pred ecC
Q 011452 414 IRA 416 (485)
Q Consensus 414 l~g 416 (485)
++-
T Consensus 430 ~Q~ 432 (764)
T TIGR03074 430 FQT 432 (764)
T ss_pred ecc
Confidence 876
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.27 E-value=5.5 Score=44.20 Aligned_cols=130 Identities=17% Similarity=0.166 Sum_probs=88.3
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEec------CCCEEEEEeCCCcEEEEECCC-Ce-eEEecccCC----CceE
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDVRN-FE-LTEVSRTEF----MTPS 324 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~------~~~~lls~s~D~tIkIWDv~t-g~-~~~~l~gh~----~~v~ 324 (485)
..|+=.|||.|+.+-+.+-+-. +.=|++.+. +.+..++|=.|..|-=||.+= ++ .+.+-.+|+ ..-.
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 5778889999999988875544 444555321 124555666888899999772 22 444444553 1345
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcEE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+++-.-+|- +|.|| +|-|||+|--|..- +.|.|-... |.-|..|.||++|+..|+ .++-|
T Consensus 435 c~aTT~sG~-IvvgS~~GdIRLYdri~~~AKTAlPgLG~~-----I~hVdvtadGKwil~Tc~------------tyLlL 496 (644)
T KOG2395|consen 435 CFATTESGY-IVVGSLKGDIRLYDRIGRRAKTALPGLGDA-----IKHVDVTADGKWILATCK------------TYLLL 496 (644)
T ss_pred eeeecCCce-EEEeecCCcEEeehhhhhhhhhcccccCCc-----eeeEEeeccCcEEEEecc------------cEEEE
Confidence 555556665 66677 99999999865543 345554444 889999999999999884 67777
Q ss_pred EeC
Q 011452 403 SNI 405 (485)
Q Consensus 403 Wdl 405 (485)
-++
T Consensus 497 i~t 499 (644)
T KOG2395|consen 497 IDT 499 (644)
T ss_pred EEE
Confidence 664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.12 E-value=6.6 Score=45.12 Aligned_cols=144 Identities=16% Similarity=0.220 Sum_probs=86.6
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-cc---CCCceEEEEEcCCC
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RT---EFMTPSAFIFLYEN 332 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~g---h~~~v~avaFspdg 332 (485)
-.|+|.++ +|++|.++.-..+..-..-|+ +++.|+.-+.|+++.++++- |+.++.. .| ....|...-|...|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~~lI~mgWs--~~eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHGELIGMGWS--DDEELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCCCeeeeccc--CCceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCc
Confidence 45899997 889998775211233344443 47899999999999999987 5554441 11 11123333343344
Q ss_pred cEEEEEeCC--------cEEEEeCC---C-----cEEEEeec----------------------------CCCCCCCCCe
Q 011452 333 QLFLTFRNR--------TVAVWNFR---G-----ELVTSFED----------------------------HLLWHPDCNT 368 (485)
Q Consensus 333 ~llaS~sD~--------TIklWd~~---G-----~ll~tl~g----------------------------H~~~~~~~~v 368 (485)
-.+++.++. .-++|... + .|.+-++. |....+...+
T Consensus 140 Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~ 219 (829)
T KOG2280|consen 140 VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSV 219 (829)
T ss_pred eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceE
Confidence 444443333 33344320 1 11122221 2222233446
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.-+.+||+.++||-+.. +|.|.+=++...+|+-++.
T Consensus 220 ~ki~VS~n~~~laLyt~-----------~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 220 VKISVSPNRRFLALYTE-----------TGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred EEEEEcCCcceEEEEec-----------CCcEEEEecchhhhhhccC
Confidence 78999999999999986 6888888888888877776
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.11 E-value=1.3 Score=49.51 Aligned_cols=69 Identities=22% Similarity=0.305 Sum_probs=55.2
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
+.+.-+.++|-=++||.+.. +|-|-|--+. -+.+.++.-|.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~-----------~gelli~R~n-~qRlwtip~p~--------------------------- 61 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTE-----------KGELLIHRLN-WQRLWTIPIPG--------------------------- 61 (665)
T ss_pred cceEEEEEcCccchhheecc-----------CCcEEEEEec-cceeEeccCCC---------------------------
Confidence 34777888999999999876 5777776665 66777776554
Q ss_pred cccccchhcccCCeE-EEEEcCCCCEEEEecCCCcEEEcc
Q 011452 446 SRIRSTVAEALEDIT-ALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~-sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.|+ +++|.|||+.||-|=.||+|+|=|
T Consensus 62 -----------~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 62 -----------ENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred -----------CccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 1455 999999999999999999999866
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=89.03 E-value=3.1 Score=44.92 Aligned_cols=93 Identities=19% Similarity=0.280 Sum_probs=63.4
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC---------------
Q 011452 229 YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--------------- 291 (485)
Q Consensus 229 ~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~--------------- 291 (485)
+.|.+ ..+.+|..+|++.+++.. |+=+-|-|+|+.+|..++-.+| -+--.+.|++-..+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKG--YRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKG--YRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhcc--CccceEEEEEeecccccccccccccCCCC
Confidence 44444 368899999988888774 4458999999999999999887 44456666532111
Q ss_pred ----EEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 292 ----KLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 292 ----~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
.|++ .-.-+.|.||++++|.. |.++...++++||
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~R----------v~a~~v~k~~rLl 415 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPR----------VAAFNVGKGCRLL 415 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCE----------EEEEEeCCCcEEC
Confidence 2222 34678899999987764 4455556666553
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.94 E-value=5.2 Score=44.39 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=89.7
Q ss_pred EEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc--------EEEEEeCCcEEEEeCC--Cc-EEEEeecC
Q 011452 292 KLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ--------LFLTFRNRTVAVWNFR--GE-LVTSFEDH 359 (485)
Q Consensus 292 ~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~--------llaS~sD~TIklWd~~--G~-ll~tl~gH 359 (485)
.|+. +..-.-|.=.|++.|+.++...-|.+ |+-+.|.||++ .|+--+|..|-=||.+ |+ .+.--++|
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4444 34556777789999999999887776 77777877653 4666668888899985 66 45555566
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-cCCCCCCCCcccccCCCCCCCCcc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI-RASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
+-... .+.++.+-+.+|. ||.||. +|.|||+|- .|+.-+|. +|--
T Consensus 426 qy~~k-~nFsc~aTT~sG~-IvvgS~-----------~GdIRLYdr-i~~~AKTAlPgLG-------------------- 471 (644)
T KOG2395|consen 426 QYSTK-NNFSCFATTESGY-IVVGSL-----------KGDIRLYDR-IGRRAKTALPGLG-------------------- 471 (644)
T ss_pred ccccc-cccceeeecCCce-EEEeec-----------CCcEEeehh-hhhhhhhcccccC--------------------
Confidence 64321 2356788888884 666765 799999995 66554443 2221
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
..|.-|..+.||+.|+..
T Consensus 472 ------------------~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 472 ------------------DAIKHVDVTADGKWILAT 489 (644)
T ss_pred ------------------CceeeEEeeccCcEEEEe
Confidence 278888889999886654
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.82 E-value=14 Score=36.85 Aligned_cols=175 Identities=17% Similarity=0.154 Sum_probs=96.6
Q ss_pred EEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEEEc-C-CcEEE--EEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D-KNVQE--IKISPGI-MLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~tl~-~-~~V~~--VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
++.. ||.++.|.++ -+.|++|||.+|+.+.+-. . ..+.. +.-.-+. ..|+- .++-.-..|..|-++|
T Consensus 51 L~~~--~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw----~egvaf~~d~~t~~~l 124 (262)
T COG3823 51 LEYL--DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW----KEGVAFKYDADTLEEL 124 (262)
T ss_pred eeee--CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe----ccceeEEEChHHhhhh
Confidence 4554 6788888764 5679999999999876643 1 11111 1111111 11221 1234455677777777
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-c-CCCceEE---EEEcCCCcEEEEEe-CCcEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-T-EFMTPSA---FIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-g-h~~~v~a---vaFspdg~llaS~s-D~TIk 344 (485)
..++. .+.-|.+. .|+..|+++...-|++.-|.++...+.+.. . ...+|.. +-+ =||.+.|--. +..|.
T Consensus 125 g~~~y-~GeGWgLt---~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~ 199 (262)
T COG3823 125 GRFSY-EGEGWGLT---SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIA 199 (262)
T ss_pred ccccc-CCcceeee---cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceE
Confidence 77763 24456665 457778888788888888888754433221 0 0011111 111 1666666655 55555
Q ss_pred EEeCC-CcEEEEeecCCC-------CCCCCCeeEEEECCCC-CEEEEE
Q 011452 345 VWNFR-GELVTSFEDHLL-------WHPDCNTNNIYITSDQ-DLIISY 383 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~-------~~~~~~v~svafSpDG-~~LaS~ 383 (485)
.=|.+ |+.+..++-... -..+.+.|.||+-|++ +++++|
T Consensus 200 rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 200 RIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 55664 777665432111 1111237899999998 455553
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=88.79 E-value=1 Score=33.99 Aligned_cols=33 Identities=12% Similarity=0.061 Sum_probs=29.4
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEE
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELV 353 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll 353 (485)
..|..++|+|...+||.+. ||.|-|+.++|+.+
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQRI 45 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCCcCc
Confidence 3688999999999999999 99999999887754
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=88.40 E-value=58 Score=38.12 Aligned_cols=66 Identities=18% Similarity=0.331 Sum_probs=43.7
Q ss_pred CCcEEEEeCC-CcEEEEee--cCCCCCCCCCeeEEE--EC-CCCC---EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 340 NRTVAVWNFR-GELVTSFE--DHLLWHPDCNTNNIY--IT-SDQD---LIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 340 D~TIklWd~~-G~ll~tl~--gH~~~~~~~~v~sva--fS-pDG~---~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.+.|---|.+ ||++-.++ -|..|+.|..-..+- +. .||+ .++.+++ +|.+.+.|-.|||.
T Consensus 413 ~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K-----------~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 413 SSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTK-----------QGQIYVLDRRTGEP 481 (764)
T ss_pred cceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECC-----------CCEEEEEECCCCCE
Confidence 3455567774 88776554 466776553211221 22 2774 7888776 79999999999999
Q ss_pred EEEecC
Q 011452 411 LAKIRA 416 (485)
Q Consensus 411 l~tl~g 416 (485)
|...+.
T Consensus 482 l~~~~e 487 (764)
T TIGR03074 482 IVPVEE 487 (764)
T ss_pred Eeecee
Confidence 987654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.98 Score=49.60 Aligned_cols=39 Identities=23% Similarity=0.495 Sum_probs=31.7
Q ss_pred eeEEEECC----CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 368 TNNIYITS----DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 368 v~svafSp----DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+.++++++ +..+|++-|. |+++||||+.|++|++++.-.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~-----------D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSR-----------DHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEEEEE-----ETTTEEEEEET-----------TSEEEEEETTTTCEEEEEETT
T ss_pred cceEEEecceeCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEeccc
Confidence 66777877 8899999997 799999999999998887443
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.56 E-value=2.1 Score=48.57 Aligned_cols=118 Identities=12% Similarity=0.062 Sum_probs=84.3
Q ss_pred ccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 95 ~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
+.....+...+++|+-|+.-|.+.|+++.+|+.+..=+++.+..+-....|++..+.|.++ +. ..|-+..
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt----~~------g~V~v~q 104 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT----AS------GRVSVFQ 104 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc----CC------ceEEeeh
Confidence 4445566666999999999999999999988877655555566778888899888777654 33 4666666
Q ss_pred eccCCcCcccceeeeccc---cCceEEEEeCCCCeEEEEeeCCCcEEEeecCC
Q 011452 175 IRRGKPDAGFALFESESL---KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 224 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~---~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~ 224 (485)
+..+++ ..+..++.++. ..+.++++| +||+.|-||..-|+|-+=.|.+
T Consensus 105 l~~~~p-~~~~~~t~~d~~~~~rVTal~Ws-~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELP-RDLDYVTPCDKSHKCRVTALEWS-KNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCC-CcceeeccccccCCceEEEEEec-ccccEEeecCCCceEEEEEech
Confidence 655443 11334555433 345578998 8999999998888887766655
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.32 E-value=5.7 Score=39.05 Aligned_cols=71 Identities=11% Similarity=0.034 Sum_probs=55.2
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-------c-------cCCCceEEEEEcCCCcEEEEEeCCcEEEEe
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-------R-------TEFMTPSAFIFLYENQLFLTFRNRTVAVWN 347 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-------~-------gh~~~v~avaFspdg~llaS~sD~TIklWd 347 (485)
.+.|....+..|++-..+|.+.+||+.+++++-.. . .....|..+.++.+|.-+++.+++..-.||
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~ 93 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS 93 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence 34455566788888899999999999999874332 2 355678888899999999999988888999
Q ss_pred CCCcE
Q 011452 348 FRGEL 352 (485)
Q Consensus 348 ~~G~l 352 (485)
.+=++
T Consensus 94 ~~L~~ 98 (219)
T PF07569_consen 94 PDLGC 98 (219)
T ss_pred cccce
Confidence 87333
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=87.12 E-value=2.9 Score=41.13 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=54.2
Q ss_pred cccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEE-------eec------CCcccEEEEEEeeCCCEEEEE
Q 011452 88 VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICF-------LNV------TADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 88 ~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~t-------l~g------~~~~~i~sv~~spdg~~Las~ 154 (485)
..|+|.=.++|.-+...+++|.+...+|++.+||+.+++++.. |+. .....|.++.++.+|.-||+-
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 4688888889888888899999999999999999998886542 221 245568888888888877775
Q ss_pred E
Q 011452 155 S 155 (485)
Q Consensus 155 S 155 (485)
|
T Consensus 85 s 85 (219)
T PF07569_consen 85 S 85 (219)
T ss_pred e
Confidence 5
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.92 E-value=0.19 Score=57.93 Aligned_cols=145 Identities=19% Similarity=0.211 Sum_probs=87.3
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecC-CCe----EEEEEc--C-C-cEEEEEEcCCc---------eEEEEEcCCCCeeEEE
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLK-NYT----MLYSIS--D-K-NVQEIKISPGI---------MLLIFTKASGHVPLKI 261 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~-~g~----~l~tl~--~-~-~V~~VafSpg~---------~ll~sss~~~D~tIkl 261 (485)
.| |||+++|.+..||.++.|... +|+ |++..+ + + .|-.+ |.... .+++... +-..-+|+
T Consensus 243 lS-pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Ittt-d~nre~k~ 319 (1283)
T KOG1916|consen 243 LS-PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTT-DVNREEKF 319 (1283)
T ss_pred eC-CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecc-cCCcceeE
Confidence 45 899999999999999999865 443 444443 2 2 23222 33211 2333322 34478999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCC------------EEEEEeCCCcEEEEECCCCeeEEecccC-CCceEEEEE
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNE------------KLLVKQENENLQILDVRNFELTEVSRTE-FMTPSAFIF 328 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~------------~lls~s~D~tIkIWDv~tg~~~~~l~gh-~~~v~avaF 328 (485)
|.-.-.+|+ +...-..+..|. +++++ .++..+.|++|+||.=+.-...-+++.| .+.|.+-+|
T Consensus 320 w~~a~w~Cl--l~~~~d~v~iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~~~~vs~~~~~hpV~S~i~ 395 (1283)
T KOG1916|consen 320 WAEAPWQCL--LDKLIDGVQIVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQPLVVSRPHDGHPVLSAIF 395 (1283)
T ss_pred eeccchhhh--hhhcccceEeec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhhhhhhhhhhhcceeccccc
Confidence 998888888 222223444555 44443 2233568999999975543333333333 335666555
Q ss_pred --c---CCCcEEEEEe--CCcEEEEeCCCc
Q 011452 329 --L---YENQLFLTFR--NRTVAVWNFRGE 351 (485)
Q Consensus 329 --s---pdg~llaS~s--D~TIklWd~~G~ 351 (485)
| |+-.-++++. ++.+++|-+.|+
T Consensus 396 v~S~~R~~h~e~~~~~~~nr~~~i~~s~g~ 425 (1283)
T KOG1916|consen 396 VTSPERPDHIELITGGPLNRELKIWVSAGE 425 (1283)
T ss_pred cccCCCccccccccCCcchhhhhhhhhccc
Confidence 3 3455567776 899999987654
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.72 E-value=26 Score=35.72 Aligned_cols=139 Identities=7% Similarity=0.034 Sum_probs=84.4
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE-EEEeeCCCcE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV-LTYSAQDSIY 217 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~-Las~s~D~ti 217 (485)
.+.---+|+|++.+-.=++-+++|....|- ...|- ..+|.. .+|.. +.-+..+++| .+.|. -...+.+-+|
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~-Ly~~~-~~h~v~---~i~~~--v~IsNgl~Wd-~d~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGE-LYSWL-AGHQVE---LIWNC--VGISNGLAWD-SDAKKFYYIDSLNYEV 182 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccE-EEEec-cCCCce---eeehh--ccCCcccccc-ccCcEEEEEccCceEE
Confidence 334455899998765556666776666643 34444 455552 24443 3444578887 45554 4456778888
Q ss_pred EEee--cCCCeE-----EEEEcC-----CcE-EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEE
Q 011452 218 KVFD--LKNYTM-----LYSISD-----KNV-QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (485)
Q Consensus 218 KlWd--l~~g~~-----l~tl~~-----~~V-~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~ 284 (485)
+-|| ..+|.+ ++.+.. +.. -..++-..|.|.++.-.. ++|.-.|..||+.|++++-.+..+.+++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng--~~V~~~dp~tGK~L~eiklPt~qitscc 260 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNG--GTVQKVDPTTGKILLEIKLPTPQITSCC 260 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecC--cEEEEECCCCCcEEEEEEcCCCceEEEE
Confidence 8899 566653 444431 111 113333223332222222 6889999999999999997788899999
Q ss_pred EEe
Q 011452 285 FIE 287 (485)
Q Consensus 285 f~~ 287 (485)
|--
T Consensus 261 FgG 263 (310)
T KOG4499|consen 261 FGG 263 (310)
T ss_pred ecC
Confidence 953
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=86.68 E-value=1.3 Score=33.35 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|..++|+|....||.|+.||.|.|++
T Consensus 13 ~v~~~~w~P~mdLiA~~t~~g~v~v~R 39 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTEDGEVLVYR 39 (47)
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEE
Confidence 799999999999999999999998875
|
|
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=86.50 E-value=8.6 Score=38.70 Aligned_cols=77 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred EEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--C--CcEEEEeCCC---cEE-E----EeecCCCCCCCCCeeE
Q 011452 303 QILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--N--RTVAVWNFRG---ELV-T----SFEDHLLWHPDCNTNN 370 (485)
Q Consensus 303 kIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D--~TIklWd~~G---~ll-~----tl~gH~~~~~~~~v~s 370 (485)
-+||+.+++..-.-........+=+|.|||++|.+|+ | +.|++++-.. .+- . .|. ..-| =.+
T Consensus 49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~-~~RW-----YpT 122 (243)
T PF07250_consen 49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQ-SGRW-----YPT 122 (243)
T ss_pred EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECccccc-CCCc-----ccc
Confidence 4788888776544334444566667999999999998 4 3688887522 221 1 121 1224 256
Q ss_pred EEECCCCCEEEEEec
Q 011452 371 IYITSDQDLIISYCK 385 (485)
Q Consensus 371 vafSpDG~~LaS~s~ 385 (485)
+..-|||+.||-|+.
T Consensus 123 ~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 123 ATTLPDGRVLIVGGS 137 (243)
T ss_pred ceECCCCCEEEEeCc
Confidence 777899999999875
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=46 Score=34.53 Aligned_cols=142 Identities=11% Similarity=0.008 Sum_probs=79.1
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEE-EEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLK-ILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIk-lWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
..+.++++.|++.+++.+.. +.+. .+| ..|+.-.... .-...+..+.+. ++ +.+++.+..+.+++=....|+
T Consensus 173 g~~~~i~~~~~g~~v~~g~~---G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~-~~-g~~~~vg~~G~~~~~s~d~G~ 246 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR---GNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQ-PD-GNLWMLARGGQIRFNDPDDLE 246 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC---ceEEEEcC-CCCCeEEEeeCCCcccceeeeEc-CC-CCEEEEecCCEEEEccCCCCC
Confidence 46888999998877665432 2332 222 1223222222 112345677775 33 445555667777643344444
Q ss_pred eEEecc----cCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 312 LTEVSR----TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 312 ~~~~l~----gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.-+... .-...+.+++|.|++++++.+.++.|. ...+ |+--+.+..+..- + ...+.+.|-.+++.+|.|.
T Consensus 247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~-~-~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 247 SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEV-P-SNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred ccccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCC-C-cceEEEEEeCCCceEEECC
Confidence 322111 112357889999999988887788664 4444 6644443321111 1 1267888888889988875
|
|
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=85.86 E-value=3.5 Score=43.80 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 458 DITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|.+|..+|.++.||+.+.+++|++|++
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l 218 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDL 218 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEE
Confidence 4999999999999999999999999984
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=85.46 E-value=27 Score=39.88 Aligned_cols=111 Identities=12% Similarity=0.044 Sum_probs=70.9
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEE-EecCCCEEEEEeCCCcEEEEECC----
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDF-IEQFNEKLLVKQENENLQILDVR---- 308 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f-~~~~~~~lls~s~D~tIkIWDv~---- 308 (485)
+..-|.-|.=+++++-.++. .++.|||...|.+...-. ...+.|..++| +.|+++-+++-|..+.|.|+--.
T Consensus 31 ~~~li~gss~~k~a~V~~~~--~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSR--SELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCcEEEEECCC--CEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 33444455433444443322 699999999988654332 23467888988 45778888888999999998532
Q ss_pred -CC----eeEEe--cccCC-CceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 309 -NF----ELTEV--SRTEF-MTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 309 -tg----~~~~~--l~gh~-~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
+. ..++. +..|+ +.|...+|.+||.+++.+ ++.+-|.|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 11 12222 23444 578999999999977654 344556654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.51 E-value=47 Score=33.32 Aligned_cols=170 Identities=11% Similarity=0.034 Sum_probs=90.0
Q ss_pred CeeEEEEecCCCeEEEEeecCCcceeEEEEEe---cCCCEE-EEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE---QFNEKL-LVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~---~~~~~l-ls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
-.-|+.||+++|+++.+-+-....+ |-+ .-++.+ +-.=.|+---++|.++-+++..+. -.+.=|.+ ..|
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~----FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeGWgL--t~d 139 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTV----FGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEGWGL--TSD 139 (262)
T ss_pred cceeEEEeccCceEEEEeecCCccc----cccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcceee--ecC
Confidence 3589999999999987655211111 110 001111 112256777788888888876652 11222444 445
Q ss_pred CcEEEEEe-CCcEEEEeC-----CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 332 NQLFLTFR-NRTVAVWNF-----RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 332 g~llaS~s-D~TIklWd~-----~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
++-|..+. ..|+..-|. .+....|++|-.-. ..|.+-+ =||.+.|--=. +..|---|.
T Consensus 140 ~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~----~LNELE~-VdG~lyANVw~-----------t~~I~rI~p 203 (262)
T COG3823 140 DKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVS----KLNELEW-VDGELYANVWQ-----------TTRIARIDP 203 (262)
T ss_pred CcceEeeCCceEEEecCHHHhhhcceEEEEECCeecc----cccceee-eccEEEEeeee-----------ecceEEEcC
Confidence 55455554 666665553 13444455543211 1233332 15555554332 244555588
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEe
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTG 474 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSg 474 (485)
++|+.++.+.-..- +.++. .+ ...+.-...+||.|++ +.++||
T Consensus 204 ~sGrV~~widlS~L---~~~~~-~~----------------------~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 204 DSGRVVAWIDLSGL---LKELN-LD----------------------KSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred CCCcEEEEEEccCC---chhcC-cc----------------------ccccccccceeecCcCCeEEEec
Confidence 89999988865431 11111 11 1112366789999999 667777
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=84.50 E-value=14 Score=41.67 Aligned_cols=149 Identities=12% Similarity=0.159 Sum_probs=87.9
Q ss_pred cCCCeEEEEE----cC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC---CE
Q 011452 222 LKNYTMLYSI----SD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN---EK 292 (485)
Q Consensus 222 l~~g~~l~tl----~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~---~~ 292 (485)
|-.|++++|. ++ |+|..||+.+|...+-+.-.-..+.+|.= +-+.+-.|+ +|..|.|.|+.. -.
T Consensus 2 LGkgkLLRTGlNaL~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE----hV~GlsW~P~~~~~~pa 74 (671)
T PF15390_consen 2 LGKGKLLRTGLNALHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE----HVHGLSWAPPCTADTPA 74 (671)
T ss_pred CcccchhhcchHHHHhhhccccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc----eeeeeeecCcccCCCCc
Confidence 3456666554 32 78999999998776654211000112211 123444454 688999976532 37
Q ss_pred EEEEeCCCcEEEEECC-----CCeeEEecccCC-----CceEEEEEcCCCcEEEEEe--CCcEEEEeCC--Cc-EEEEee
Q 011452 293 LLVKQENENLQILDVR-----NFELTEVSRTEF-----MTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE-LVTSFE 357 (485)
Q Consensus 293 lls~s~D~tIkIWDv~-----tg~~~~~l~gh~-----~~v~avaFspdg~llaS~s--D~TIklWd~~--G~-ll~tl~ 357 (485)
||+-+..+.|-+|.+. +++++..-.-|- .-+-...|.|....|+--. |-.| +.+++ +. ....+.
T Consensus 75 LLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~ 153 (671)
T PF15390_consen 75 LLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK 153 (671)
T ss_pred eEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc
Confidence 8899999999999987 222222211111 1223345677777766554 4444 67774 33 344555
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++.. |...+|++||+.|+-+-
T Consensus 154 ~~G~------IhCACWT~DG~RLVVAv 174 (671)
T PF15390_consen 154 TSGL------IHCACWTKDGQRLVVAV 174 (671)
T ss_pred CCce------EEEEEecCcCCEEEEEe
Confidence 4432 78899999999999874
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=83.82 E-value=72 Score=34.92 Aligned_cols=156 Identities=17% Similarity=0.140 Sum_probs=79.4
Q ss_pred CceEEEEE-cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe--cccCC
Q 011452 244 GIMLLIFT-KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--SRTEF 320 (485)
Q Consensus 244 g~~ll~ss-s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--l~gh~ 320 (485)
++..++.. .......+-+.|. +|.+...+.....+...+.+ ..++.|++++. ..++..|+. |+.+.. +.+..
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~--l~nG~ll~~~~-~~~~e~D~~-G~v~~~~~l~~~~ 188 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQ--LPNGNLLIGSG-NRLYEIDLL-GKVIWEYDLPGGY 188 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEET-TS-EEEEE-GGGT--SSEEE---TTS-EEEEEB-TEEEEE-TT---EEEEEE--TTE
T ss_pred CcEEEEeCCCCCCCceEEEECC-CccEEEEEccCccccceeeE--cCCCCEEEecC-CceEEEcCC-CCEEEeeecCCcc
Confidence 55555553 1123367778885 78888777632222222333 34667777654 888888886 554332 22200
Q ss_pred -CceEEEEEcCCCcEEEEEe--------------CCcEEEEeCCCcEEEE--eecCC-----------------------
Q 011452 321 -MTPSAFIFLYENQLFLTFR--------------NRTVAVWNFRGELVTS--FEDHL----------------------- 360 (485)
Q Consensus 321 -~~v~avaFspdg~llaS~s--------------D~TIklWd~~G~ll~t--l~gH~----------------------- 360 (485)
..--.+.+.|+|.+|+.+. ...|-..|-+|+.+.. +.+|.
T Consensus 189 ~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 189 YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 0011266899999888665 1234445544776664 33343
Q ss_pred CC-CCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 361 LW-HPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 361 ~~-~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
+| | +|+|.+.| |+.+|+|+=. -..|-..|..||+.+..|-+|.+
T Consensus 269 DW~H----~Nsi~yd~~dd~iivSsR~-----------~s~V~~Id~~t~~i~Wilg~~~~ 314 (477)
T PF05935_consen 269 DWLH----INSIDYDPSDDSIIVSSRH-----------QSAVIKIDYRTGKIKWILGPPGG 314 (477)
T ss_dssp BS------EEEEEEETTTTEEEEEETT-----------T-EEEEEE-TTS-EEEEES-STT
T ss_pred Cccc----cCccEEeCCCCeEEEEcCc-----------ceEEEEEECCCCcEEEEeCCCCC
Confidence 12 3 79999988 7777777532 34777778889999999988764
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.76 E-value=64 Score=36.05 Aligned_cols=203 Identities=8% Similarity=-0.005 Sum_probs=99.0
Q ss_pred cCEEEEEeCC------CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 105 RDIVFALAQS------GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 105 ~~~ias~s~d------gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
+.+.+.|+.+ .++-.+|..+++- ..+..-+...-...+-.-+|...|.++.++. -...++..+|..+.
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~-----~~~~sve~Ydp~~~ 377 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIH-VELPPMIKNRCRFSLAVIDDTIYAIGGQNGT-----NVERTIECYTMGDD 377 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeE-eeCCCCcchhhceeEEEECCEEEEECCcCCC-----CCCceEEEEECCCC
Confidence 7777777754 3455677665532 1121101111111222345666666543221 11246777887665
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC-----------------------cEEEeecCCCe--EEEEEcC
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-----------------------IYKVFDLKNYT--MLYSISD 233 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~-----------------------tiKlWdl~~g~--~l~tl~~ 233 (485)
+.....++-. .......+++ +|++.+.|+.++ ++-.+|..+.+ .+..+..
T Consensus 378 ~W~~~~~mp~--~r~~~~~~~~---~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~ 452 (557)
T PHA02713 378 KWKMLPDMPI--ALSSYGMCVL---DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT 452 (557)
T ss_pred eEEECCCCCc--ccccccEEEE---CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc
Confidence 5421111111 1111223444 689999988663 35566666544 2222221
Q ss_pred CcEE-EEEEcCCceEEEEEcCCC---CeeEEEEecCC-C--eEEEEeecCCcceeEEEEEecCCCEEEEEeCCC--cEEE
Q 011452 234 KNVQ-EIKISPGIMLLIFTKASG---HVPLKILSIED-G--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--NLQI 304 (485)
Q Consensus 234 ~~V~-~VafSpg~~ll~sss~~~---D~tIklWdi~t-G--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~--tIkI 304 (485)
.... +++.-.|...++++..+. ...+..+|.++ . +.+..++........+. .+|...++||.|+ ++..
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~---~~~~iyv~Gg~~~~~~~e~ 529 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL---HDNTIMMLHCYESYMLQDT 529 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE---ECCEEEEEeeecceeehhh
Confidence 1111 233334544454432111 13467888886 3 34455543222222222 2355556688887 8999
Q ss_pred EECCCCeeEEecccCCC
Q 011452 305 LDVRNFELTEVSRTEFM 321 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~ 321 (485)
+|+.+.+-...-..|..
T Consensus 530 yd~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 530 FNVYTYEWNHICHQHSN 546 (557)
T ss_pred cCcccccccchhhhcCC
Confidence 99999887766656653
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=83.59 E-value=7.6 Score=42.01 Aligned_cols=89 Identities=10% Similarity=0.028 Sum_probs=62.4
Q ss_pred EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEE-CC---------------
Q 011452 314 EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYI-TS--------------- 375 (485)
Q Consensus 314 ~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svaf-Sp--------------- 375 (485)
..+....-.+.+++.+|.+++.|... =|-|-|+|+. |..++-++|-.+.+ +--+.. .+
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAq----c~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQ----CGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccce----EEEEEeecccccccccccccCCCC
Confidence 33444455678899999999888865 6789999995 88888777654321 111111 11
Q ss_pred -CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 376 -DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 376 -DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
-..+|+-+.. .-|.|.||++++|..++.+.-
T Consensus 377 ~~~l~LvIyap----------rRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 377 RFALFLVIYAP----------RRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cceEEEEEEec----------cCCeEEEEecCCCCEEEEEEe
Confidence 1357787765 369999999999999999865
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=83.37 E-value=70 Score=34.39 Aligned_cols=166 Identities=12% Similarity=0.091 Sum_probs=93.9
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--c------CCcceeEEEEE--ecCCC-----EEEEEe
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--H------LLHRNKKVDFI--EQFNE-----KLLVKQ 297 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~------~~~~~~~V~f~--~~~~~-----~lls~s 297 (485)
...|.+++.|+=|..+++. .++++.|-|+..-..+..-. . ....+..+.|. +..++ .|++|-
T Consensus 86 ~g~vtal~~S~iGFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 86 QGPVTALKNSDIGFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp S-SEEEEEE-BTSEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred CCcEeEEecCCCcEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 5689999999988888774 33799999998888876622 2 11134466664 12221 566677
Q ss_pred CCCcEEEEECC--C-Ce----eEEecccCCCceEEEE-EcCC---------------------CcEEEEEeCCcEEEEeC
Q 011452 298 ENENLQILDVR--N-FE----LTEVSRTEFMTPSAFI-FLYE---------------------NQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 298 ~D~tIkIWDv~--t-g~----~~~~l~gh~~~v~ava-Fspd---------------------g~llaS~sD~TIklWd~ 348 (485)
..|++-++.+. . +. .......|...|.++. |..+ ..+++.+++..||+...
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 88999888764 1 21 2222234556777665 5322 23666777899999998
Q ss_pred -CCcEEEEeecCCCCCCCCCeeEEEEC-----CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 349 -RGELVTSFEDHLLWHPDCNTNNIYIT-----SDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 349 -~G~ll~tl~gH~~~~~~~~v~svafS-----pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++++.+........ ...+.+- ..+..|++-.. +|.|++..+-.=+.+..++-+
T Consensus 243 ~~~k~~~K~~~~~~~-----~~~~~vv~~~~~~~~~~Lv~l~~-----------~G~i~i~SLP~Lkei~~~~l~ 301 (395)
T PF08596_consen 243 PKSKGAHKSFDDPFL-----CSSASVVPTISRNGGYCLVCLFN-----------NGSIRIYSLPSLKEIKSVSLP 301 (395)
T ss_dssp T---EEEEE-SS-EE-----EEEEEEEEEE-EEEEEEEEEEET-----------TSEEEEEETTT--EEEEEE-S
T ss_pred CCCcccceeeccccc-----cceEEEEeecccCCceEEEEEEC-----------CCcEEEEECCCchHhhcccCC
Confidence 47765433332211 4455553 46777888775 799999999877777766554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes | Back alignment and domain information |
|---|
Probab=82.89 E-value=22 Score=35.75 Aligned_cols=138 Identities=16% Similarity=0.110 Sum_probs=76.7
Q ss_pred EEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEe-CC--CcEEEEECCC----CeeEEec--ccCCCceEEEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ-EN--ENLQILDVRN----FELTEVS--RTEFMTPSAFIF 328 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s-~D--~tIkIWDv~t----g~~~~~l--~gh~~~v~avaF 328 (485)
-+||+.+++.. .+.-. ...+ +=+|. ++|..|.+|+ .| ..+|+++..+ ....+.. -...-|=-++.-
T Consensus 49 ~~yD~~tn~~r-pl~v~-td~FCSgg~~L-~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 49 VEYDPNTNTFR-PLTVQ-TDTFCSGGAFL-PDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEecCCCcEE-eccCC-CCCcccCcCCC-CCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 36777776542 22210 1111 11232 4554454554 23 5688888664 1222211 122235556667
Q ss_pred cCCCcEEEEEe--CCcEEEEeCC--Cc-EEE--Eee---cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 329 LYENQLFLTFR--NRTVAVWNFR--GE-LVT--SFE---DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 329 spdg~llaS~s--D~TIklWd~~--G~-ll~--tl~---gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
+|||+.|+-|+ .-+...|.-. +. ... -|. ..... +- =.-+...|||++++.+.. +
T Consensus 126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~--nl-YP~~~llPdG~lFi~an~------------~ 190 (243)
T PF07250_consen 126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPN--NL-YPFVHLLPDGNLFIFANR------------G 190 (243)
T ss_pred CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCcc--cc-CceEEEcCCCCEEEEEcC------------C
Confidence 89999988887 5588888862 22 111 111 11111 11 136788999999999864 3
Q ss_pred eEEEEeCCCCeEEEEecC
Q 011452 399 SINISNILTGKCLAKIRA 416 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~g 416 (485)
+ .|+|..+.+.+++|..
T Consensus 191 s-~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 191 S-IIYDYKTNTVVRTLPD 207 (243)
T ss_pred c-EEEeCCCCeEEeeCCC
Confidence 3 4789999988887764
|
Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium []. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=82.44 E-value=6.1 Score=43.42 Aligned_cols=39 Identities=10% Similarity=0.422 Sum_probs=28.7
Q ss_pred CceEEEEEcC----CCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 321 MTPSAFIFLY----ENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 321 ~~v~avaFsp----dg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
+.+.+.++++ +..+|++-+ |+++|+||+. ++++.++.-.
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 3456666766 788888998 9999999996 9998877544
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.64 E-value=10 Score=45.42 Aligned_cols=104 Identities=12% Similarity=0.091 Sum_probs=73.7
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCC
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHL 360 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~ 360 (485)
.+.+.+......++...|..|++.-+.-.......-.-...+.+|+|+|-|+.++-+. +||+.-+...++.+..+.+-.
T Consensus 160 ~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp 239 (1405)
T KOG3630|consen 160 KNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPP 239 (1405)
T ss_pred cccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCC
Confidence 4444443344555666788887766542221111112345789999999999999998 999999999999888776554
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
... +..|.+|.|-....+||.|+.-
T Consensus 240 ~~e-~yrvl~v~Wl~t~eflvvy~n~ 264 (1405)
T KOG3630|consen 240 VEE-NYRVLSVTWLSTQEFLVVYGNV 264 (1405)
T ss_pred cCC-CcceeEEEEecceeEEEEeccc
Confidence 432 4568999999999999999864
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=67 Score=35.87 Aligned_cols=190 Identities=9% Similarity=0.048 Sum_probs=98.2
Q ss_pred CCeEEEEeeCC------CcEEEeecCCCeE--EEEEcCC-cEEEEEEcCCceEEEEEcCCC--CeeEEEEecCCCeEE--
Q 011452 204 NGKVLTYSAQD------SIYKVFDLKNYTM--LYSISDK-NVQEIKISPGIMLLIFTKASG--HVPLKILSIEDGTVL-- 270 (485)
Q Consensus 204 nG~~Las~s~D------~tiKlWdl~~g~~--l~tl~~~-~V~~VafSpg~~ll~sss~~~--D~tIklWdi~tG~~L-- 270 (485)
++++.+.|+.+ .++-.+|..+.+- +-.+... .-.+++...|..+++++.... -.++..+|..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 67888888754 3455667665542 1111111 111333335555555533211 146888998876432
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEeCC-----------------------CcEEEEECCCCeeEEecccCCCceEEEE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQEN-----------------------ENLQILDVRNFELTEVSRTEFMTPSAFI 327 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s~D-----------------------~tIkIWDv~tg~~~~~l~gh~~~v~ava 327 (485)
..+...... ..++ ..++...++||.+ .++..+|.++.+-.....-......+-+
T Consensus 383 ~~mp~~r~~-~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~ 459 (557)
T PHA02713 383 PDMPIALSS-YGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGV 459 (557)
T ss_pred CCCCccccc-ccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcE
Confidence 222211011 1222 1234444556654 3588899998876444322222222233
Q ss_pred EcCCCcEEEEEe-C------CcEEEEeCCC-c---EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 328 FLYENQLFLTFR-N------RTVAVWNFRG-E---LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 328 Fspdg~llaS~s-D------~TIklWd~~G-~---ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
-.-+|++.+.|+ + .+|..+|.+. . .+..+.-.... ...+++ +|++.+.|+.+ +
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~-----~~~~~~--~~~iyv~Gg~~--------~- 523 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSA-----LHTILH--DNTIMMLHCYE--------S- 523 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccc-----ceeEEE--CCEEEEEeeec--------c-
Confidence 355788888876 4 2467788753 2 33444332211 333444 88999998862 1
Q ss_pred CCeEEEEeCCCCeEEE
Q 011452 397 AGSINISNILTGKCLA 412 (485)
Q Consensus 397 DgtIklWdl~TGk~l~ 412 (485)
..++-.+|+.|.+--.
T Consensus 524 ~~~~e~yd~~~~~W~~ 539 (557)
T PHA02713 524 YMLQDTFNVYTYEWNH 539 (557)
T ss_pred eeehhhcCcccccccc
Confidence 1378889988877543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=80.90 E-value=31 Score=39.39 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=58.6
Q ss_pred EeCCCcEEEEECCCCeeE--EecccCCCceEEEEE--cCCCcEEEEEe-CCcEEEEeC------C-C---cEEEE--eec
Q 011452 296 KQENENLQILDVRNFELT--EVSRTEFMTPSAFIF--LYENQLFLTFR-NRTVAVWNF------R-G---ELVTS--FED 358 (485)
Q Consensus 296 ~s~D~tIkIWDv~tg~~~--~~l~gh~~~v~avaF--spdg~llaS~s-D~TIklWd~------~-G---~ll~t--l~g 358 (485)
.+...++.|||.+.+.+. +.+ .+.+.|..+.| .||||.+++-+ .+.|.|+-- + + ..++. +.+
T Consensus 47 ~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~ 125 (631)
T PF12234_consen 47 DSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISS 125 (631)
T ss_pred ECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeec
Confidence 456789999999988753 233 34567877765 79999999999 999999952 1 1 12332 234
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
|+.. . |.+..+.+||.+++.++
T Consensus 126 ~T~h---~-Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 126 HTPH---P-IGDSIWLKDGTLVVGSG 147 (631)
T ss_pred CCCC---C-ccceeEecCCeEEEEeC
Confidence 4421 1 77899999999888654
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=80.70 E-value=6.8 Score=27.21 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=30.1
Q ss_pred cCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 288 QFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 288 ~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
|++++|.++. .+++|-++|..+++.+....- ...+..++|+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEeC
Confidence 4567777764 789999999999988777654 3456667664
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=80.51 E-value=71 Score=32.59 Aligned_cols=158 Identities=14% Similarity=0.215 Sum_probs=86.7
Q ss_pred EeecCCCeEEEEEc--------CCcEEEEEEcC--C----ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee-EE
Q 011452 219 VFDLKNYTMLYSIS--------DKNVQEIKISP--G----IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK-KV 283 (485)
Q Consensus 219 lWdl~~g~~l~tl~--------~~~V~~VafSp--g----~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~-~V 283 (485)
+||+++.+.++++. +...+.+++.. + +...++.+ ...-|-+.|+.+|+--+.+.++..... ..
T Consensus 38 ~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~--~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~ 115 (287)
T PF03022_consen 38 AFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS--GGPGLIVYDLATGKSWRVLHNSFSPDPDAG 115 (287)
T ss_dssp EEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET--TTCEEEEEETTTTEEEEEETCGCTTS-SSE
T ss_pred EEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC--CcCcEEEEEccCCcEEEEecCCcceecccc
Confidence 56677766655542 24688888874 3 34444433 336899999999998877765433221 12
Q ss_pred E-------EEecCCCEEEEE----eCCCcEEEEECCCC-ee----------------------EEecccCC-CceEEEEE
Q 011452 284 D-------FIEQFNEKLLVK----QENENLQILDVRNF-EL----------------------TEVSRTEF-MTPSAFIF 328 (485)
Q Consensus 284 ~-------f~~~~~~~lls~----s~D~tIkIWDv~tg-~~----------------------~~~l~gh~-~~v~avaF 328 (485)
. |.-+++ ..-+. +.|+..--|..-++ .+ .+.+ |.. ......++
T Consensus 116 ~~~i~g~~~~~~dg-~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~ 193 (287)
T PF03022_consen 116 PFTIGGESFQWPDG-IFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAI 193 (287)
T ss_dssp EEEETTEEEEETTS-EEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEE
T ss_pred ceeccCceEecCCC-ccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccCCCCceEEE
Confidence 2 211211 11111 12332222222222 11 1222 221 24566788
Q ss_pred cCCCcEEEEEe-CCcEEEEeCCC-----cEEEEeec-C-CCCCCCCCeeEEEECC--CCCEEEEEec
Q 011452 329 LYENQLFLTFR-NRTVAVWNFRG-----ELVTSFED-H-LLWHPDCNTNNIYITS--DQDLIISYCK 385 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~G-----~ll~tl~g-H-~~~~~~~~v~svafSp--DG~~LaS~s~ 385 (485)
.++|.++.+-- ...|..||.++ +...-..+ . ..| +.++.|.+ +|.+-+....
T Consensus 194 D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~-----pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 194 DPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQW-----PDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp ETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSS-----EEEEEE-T--TS-EEEEE-S
T ss_pred CCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeec-----cceeeeccccCceEEEEECc
Confidence 99999999988 99999999987 22111222 2 457 89999999 9988887653
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 485 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-07 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 4e-07
Identities = 77/468 (16%), Positives = 138/468 (29%), Gaps = 136/468 (29%)
Query: 38 FVNSVKKLQRREISS------KRDRAFTMTDAQERFRNIRLQEEYD-----THDPKGHCS 86
F + Q ++I S + F D Q+ ++I +EE D G
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 87 MVLPFLRKRSKI----IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSL 142
+ L K+ ++ +E V + F + + E Q ++ +
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKF------LMSPIKTEQRQP---------SMMTRM 111
Query: 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW------PG 196
+ + + V+A N R +R+ AL E K G
Sbjct: 112 YIEQRDRLYNDNQVFAKYN----VSRLQPYLKLRQ-------ALLELRPAKNVLIDGVLG 160
Query: 197 FVEFDDVNGK-VLTYSAQDSI-------YKVF------------DLKNYTMLYSISDKN- 235
GK + S +K+F L+ L D N
Sbjct: 161 S-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 236 VQEIKISPGIML-----------LIFTKASGHVPLKILS-IEDGTVLKSFNH-----LLH 278
S I L L+ +K + L +L +++ +FN L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLLNVQNAKAWNAFNLSCKILLTT 272
Query: 279 RNKKV-DFIE---------QFNEKLLVKQENENL--QILDVRNFEL-TEVSRTEFMTPSA 325
R K+V DF+ + L E ++L + LD R +L EV T S
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI 332
Query: 326 FIFLYENQLFLTFRN-RTVAVWNFRGELVTSFEDHL-------LWH-----PDCNTNNIY 372
+ L T+ N + V ++ S + L ++ P + +
Sbjct: 333 IAESIRDGL-ATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDRLSVFPP----SAH 386
Query: 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420
I + L + + D + + N L L + +
Sbjct: 387 IPT-ILLSLIWFDVIKSDV--------MVVVNKLHKYSLVEKQPKEST 425
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 100.0 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 100.0 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 100.0 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 100.0 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 100.0 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 100.0 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.98 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.97 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.97 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.97 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.97 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.97 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.96 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.96 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.96 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.96 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.96 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.95 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.95 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.95 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.95 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.95 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.95 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.94 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.94 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.94 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.94 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.93 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.93 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.92 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.92 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.92 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.91 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.91 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.91 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.91 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.9 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.9 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.9 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.89 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.87 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.87 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.86 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.86 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.85 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.85 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.85 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.84 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.82 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.82 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.82 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.81 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.8 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.8 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.8 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.79 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.79 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.77 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.76 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.76 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.76 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.75 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.75 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.74 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.73 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.72 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.7 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.7 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.68 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.67 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.65 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.63 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.63 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.59 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.59 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.59 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.56 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.56 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.53 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.53 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.52 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.52 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.52 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.52 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.47 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.45 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.45 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.43 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.42 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.42 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.38 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.36 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.34 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.3 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.2 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.18 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.17 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.13 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.08 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 99.08 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.05 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 99.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.0 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.99 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.99 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.99 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.98 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.96 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.95 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.93 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.89 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.88 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.86 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.85 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.82 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.8 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.75 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.72 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.71 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.71 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.7 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.64 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.63 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.63 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.59 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.53 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.5 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.49 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.49 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.48 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.46 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.46 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.45 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.44 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.43 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.43 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.4 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.39 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.36 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.31 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.28 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.28 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 98.24 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 98.23 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.22 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.19 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 98.15 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.12 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.1 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.99 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.97 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.94 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.89 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.83 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.78 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.73 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.7 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.68 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.61 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.54 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 97.42 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.35 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.25 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.98 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.44 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 95.89 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.79 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.11 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.07 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.91 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.89 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.74 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 94.73 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.38 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.26 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 93.52 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 92.59 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.84 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.82 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 90.67 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 89.9 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 89.9 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 89.82 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 89.79 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 88.85 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 88.47 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 86.73 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 86.19 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 84.88 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 83.64 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 82.99 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 82.69 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 82.3 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 80.19 |
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-53 Score=452.31 Aligned_cols=362 Identities=9% Similarity=0.116 Sum_probs=279.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
|...|..++|+ |++||+++.||+|+|||+.+++ ++.++.+ |...|++|+|+|||+.||+++.+.... .+
T Consensus 58 h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~-~~~~v~~v~fs~dg~~l~~~~~~~~~~------~~ 130 (611)
T 1nr0_A 58 HSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPV-FSGPVKDISWDSESKRIAAVGEGRERF------GH 130 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEEC-SSSCEEEEEECTTSCEEEEEECCSSCS------EE
T ss_pred CCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecc-cCCceEEEEECCCCCEEEEEECCCCce------eE
Confidence 34445555555 9999999999999999987654 4556666 888999999999999999987532222 47
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCce
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIM 246 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ 246 (485)
+++|+ .|+... .+. +|...+..|+|+ |+++ .|++++.|++|||||+.+++++.++.+ ..|++|+|||++.
T Consensus 131 v~~wd--~~~~~~---~l~-gh~~~v~~v~f~-p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~ 203 (611)
T 1nr0_A 131 VFLFD--TGTSNG---NLT-GQARAMNSVDFK-PSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS 203 (611)
T ss_dssp EEETT--TCCBCB---CCC-CCSSCEEEEEEC-SSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEee--CCCCcc---eec-CCCCCceEEEEC-CCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCC
Confidence 88888 465422 222 355678899998 7876 699999999999999999999999865 4799999999877
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEee-------cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-----
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFN-------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE----- 314 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~-------~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~----- 314 (485)
++++++. |++|+|||+.+|+++.+|. +|.+.+..|+|+ |++.+|++++.|++|||||+++++++.
T Consensus 204 ~las~s~--D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~ 280 (611)
T 1nr0_A 204 LFASTGG--DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVG 280 (611)
T ss_dssp EEEEEET--TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECC
T ss_pred EEEEEEC--CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCC
Confidence 7776654 5899999999999999995 799999999997 788999999999999999999887654
Q ss_pred --------------------------------------ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE
Q 011452 315 --------------------------------------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 354 (485)
Q Consensus 315 --------------------------------------~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~ 354 (485)
++.+|...|++++|+|||++|+|++ |++|++||+. |++..
T Consensus 281 ~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~ 360 (611)
T 1nr0_A 281 TRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR 360 (611)
T ss_dssp SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceee
Confidence 3458999999999999999999999 9999999996 77765
Q ss_pred Ee-ecCCCC--------------------------------------------------CC-------------------
Q 011452 355 SF-EDHLLW--------------------------------------------------HP------------------- 364 (485)
Q Consensus 355 tl-~gH~~~--------------------------------------------------~~------------------- 364 (485)
.+ .+|... .+
T Consensus 361 ~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~ 440 (611)
T 1nr0_A 361 VFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 440 (611)
T ss_dssp CSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETT
T ss_pred ecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCC
Confidence 54 233210 00
Q ss_pred -------CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--EEEecCCCCCCCCcccccCCCCCCC
Q 011452 365 -------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC--LAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 365 -------~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
...+++++|||||++||+|+. |++|+|||+.++++ +.+ .+|.. .....+.+++++++.
T Consensus 441 ~~~~~~~~~~v~~va~spdg~~lasgs~-----------D~~v~lwd~~~~~~~~~~~-~~h~~-~v~~v~fspdg~~la 507 (611)
T 1nr0_A 441 KLTEVPISYNSSCVALSNDKQFVAVGGQ-----------DSKVHVYKLSGASVSEVKT-IVHPA-EITSVAFSNNGAFLV 507 (611)
T ss_dssp EEEEEECSSCEEEEEECTTSCEEEEEET-----------TSEEEEEEEETTEEEEEEE-EECSS-CEEEEEECTTSSEEE
T ss_pred ceeeeecCCCceEEEEeCCCCEEEEeCC-----------CCeEEEEEccCCceeeeec-cCCCC-ceEEEEECCCCCEEE
Confidence 012678999999999999997 79999999988764 455 67874 334566667776555
Q ss_pred Cccccccccccccc------c--chhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIR------S--TVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~------~--~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
++..+......... . ....+...|++|+|||||++|||||.|++||||+.
T Consensus 508 s~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~ 565 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 565 (611)
T ss_dssp EEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEEC
Confidence 44332221111111 0 01114468999999999999999999999999984
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-53 Score=453.77 Aligned_cols=318 Identities=11% Similarity=0.121 Sum_probs=267.0
Q ss_pred cccceEEEEEe--cC-EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 94 KRSKIIEIVAA--RD-IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 94 ~~s~V~~i~~s--~~-~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
|...|..|.|+ ++ +||+++.|+++++|+..+++++.++.+ |...|++|+|+|||++||++|. | +++
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H~~~V~~v~fspdg~~las~s~----D------~~i 214 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-HTKFVHSVRYNPDGSLFASTGG----D------GTI 214 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCE
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-ccCceEEEEECCCCCEEEEEEC----C------CcE
Confidence 56679999999 44 699999999999999999999999987 8889999999999999999874 4 599
Q ss_pred EEeEeccCCcCcccceeee------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-------------
Q 011452 171 RIEYIRRGKPDAGFALFES------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------------- 231 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl------------- 231 (485)
+||++.+|++.. .+.. .|...+..|+|+ |||++|++++.|++|||||+.+++++.++
T Consensus 215 ~lwd~~~g~~~~---~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 215 VLYNGVDGTKTG---VFEDDSLKNVAHSGSVFGLTWS-PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp EEEETTTCCEEE---ECBCTTSSSCSSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred EEEECCCCcEee---eeccccccccccCCCEEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 999998888632 2321 355677899998 79999999999999999999998876543
Q ss_pred --------------------------------cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe-ecCC-
Q 011452 232 --------------------------------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF-NHLL- 277 (485)
Q Consensus 232 --------------------------------~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~- 277 (485)
|...|.+++|||++.++++++. |++|++||+++|+++..+ .+|.
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~--D~~v~~Wd~~~~~~~~~~~~~h~~ 368 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADA--EGHINSWDISTGISNRVFPDVHAT 368 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEETTTCCEEECSSCSCSS
T ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeC--CCcEEEEECCCCceeeecccCCcc
Confidence 2347999999997777776554 589999999998876654 1221
Q ss_pred --------------------------------------------------------------------------------
Q 011452 278 -------------------------------------------------------------------------------- 277 (485)
Q Consensus 278 -------------------------------------------------------------------------------- 277 (485)
T Consensus 369 ~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~ 448 (611)
T 1nr0_A 369 MITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPIS 448 (611)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECS
T ss_pred eEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecC
Confidence
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcE
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL 352 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~l 352 (485)
..+.+|+|+ |++..|++++.|++|+|||+.++++ +.. .+|...|.+++|+|||++||+++ |++|++||+. +++
T Consensus 449 ~~v~~va~s-pdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~ 526 (611)
T 1nr0_A 449 YNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL 526 (611)
T ss_dssp SCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred CCceEEEEe-CCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCce
Confidence 224567775 7788899999999999999998765 344 68999999999999999999999 9999999994 677
Q ss_pred EEE--eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe-EE-EEecCC-CCCCCCcccc
Q 011452 353 VTS--FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-CL-AKIRAS-NGLPAENECS 427 (485)
Q Consensus 353 l~t--l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-~l-~tl~gH-~~~~~~~~~~ 427 (485)
+.+ +.+|... |++|+|||||++|||++. |++|||||+.+++ ++ ..+.+| .
T Consensus 527 ~~~~~~~~H~~~-----V~~v~fspdg~~lasgs~-----------D~~v~lW~~~~~~~~~~~~~~~h~~--------- 581 (611)
T 1nr0_A 527 AHTNSWTFHTAK-----VACVSWSPDNVRLATGSL-----------DNSVIVWNMNKPSDHPIIIKGAHAM--------- 581 (611)
T ss_dssp SCCCCCCCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTCTTSCCEEETTSSTT---------
T ss_pred eeeeeeeecccc-----eeEEEECCCCCEEEEEEC-----------CCcEEEEECCCcccccchhhccCcc---------
Confidence 665 3458877 999999999999999997 7999999999875 44 678888 5
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|++|+|+|||+ |+||+.|++||||+.
T Consensus 582 -----------------------------~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 582 -----------------------------SSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp -----------------------------SCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred -----------------------------cCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 2899999999999 999999999999984
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-52 Score=432.10 Aligned_cols=313 Identities=13% Similarity=0.222 Sum_probs=276.9
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.+..+|..|.|+ ++.|++++.|+++++|+.. ++++.++.+ |...|++++|+|+|+.|++++. | +++
T Consensus 260 ~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~~~----d------~~i 327 (577)
T 2ymu_A 260 GHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVWGVAFSPDGQTIASASD----D------KTV 327 (577)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCE
T ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEec-CCCCeEEEEECCCCCEEEEEeC----C------CeE
Confidence 467889999998 8999999999999999965 899998887 8889999999999999999773 4 589
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll 248 (485)
++|++...++ ..+. .+...+..++|+ |+|++|++++.|++|+|||. +++++.++. ...|.+|+|||++.++
T Consensus 328 ~~w~~~~~~~----~~~~-~~~~~v~~~~~s-~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l 400 (577)
T 2ymu_A 328 KLWNRNGQHL----QTLT-GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTI 400 (577)
T ss_dssp EEEETTSCEE----EEEC-CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred EEEeCCCCee----EEEe-CCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEE
Confidence 9999643332 1222 234556789998 89999999999999999995 678888775 4689999999977766
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
++++. |++|+|||. +|++++++.+|...+..++|+ |++..|++++.|++|+|||+ +++++..+.+|...|.+++|
T Consensus 401 ~~~~~--d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~ 475 (577)
T 2ymu_A 401 ASASD--DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS-PDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAF 475 (577)
T ss_dssp EEEET--TSEEEEECT-TCCEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEE
T ss_pred EEEeC--CCEEEEEeC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEE
Confidence 66543 489999995 789999999999999999996 78889999999999999996 57888999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
+|||++||+++ |++|+|||.+|+++.+|++|... |++|+|||||++||+++. |++|+|||. +
T Consensus 476 spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~-----------dg~v~lwd~-~ 538 (577)
T 2ymu_A 476 SPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWNR-N 538 (577)
T ss_dssp CTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSEEEEECT-T
T ss_pred cCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCC-----EEEEEEcCCCCEEEEEEC-----------cCEEEEEeC-C
Confidence 99999999999 99999999999999999999977 999999999999999987 799999995 7
Q ss_pred CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|++++++.+|.+ .|++|+|+|||++|+|||.|++|+|||
T Consensus 539 ~~~~~~~~~h~~--------------------------------------~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQLLQTLTGHSS--------------------------------------SVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEEECCSS--------------------------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCEEEEEcCCCC--------------------------------------CEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999983 899999999999999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-51 Score=403.55 Aligned_cols=289 Identities=15% Similarity=0.199 Sum_probs=254.6
Q ss_pred CcEEEEeecCCcccEEEEEEeeC----CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEE
Q 011452 125 NQRICFLNVTADEVIRSLFYNKN----NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVE 199 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spd----g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~ 199 (485)
|.++..+.+ |.+.|++|+|+|+ +++|||+|. | ++++||++..+++.. .+.. ++...+.+|+
T Consensus 22 g~~~~~~~~-H~~~V~~v~~~~~~~~~~~~l~tgs~----D------~~v~vW~~~~~~~~~---~~~l~gh~~~v~~~~ 87 (321)
T 3ow8_A 22 GILFKQEQA-HDDAIWSVAWGTNKKENSETVVTGSL----D------DLVKVWKWRDERLDL---QWSLEGHQLGVVSVD 87 (321)
T ss_dssp EEEEEETTS-SSSCEEEEEEC-------CEEEEEET----T------SCEEEEEEETTEEEE---EEEECCCSSCEEEEE
T ss_pred hheeeeccc-CCCcEEEEEEecCCCCCCCEEEEEcC----C------CCEEEEECCCCCeee---eeeeccCCCCEEEEE
Confidence 445555665 8999999999985 678999874 4 599999987765421 1221 3455677899
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
|+ +++.+|++++.|++|||||+.+++++.++.. ..|.+++|+|++.++++++ .|++|++||+++++.+.++..|.
T Consensus 88 ~~-~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~--~dg~v~i~~~~~~~~~~~~~~~~ 164 (321)
T 3ow8_A 88 IS-HTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGT--HVGKVNIFGVESGKKEYSLDTRG 164 (321)
T ss_dssp EC-SSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEEC--TTSEEEEEETTTCSEEEEEECSS
T ss_pred EC-CCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEc--CCCcEEEEEcCCCceeEEecCCC
Confidence 98 7999999999999999999999999988864 4789999999777776654 45899999999999999999988
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEE
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 355 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~t 355 (485)
..+..++|+ |++..|++++.|++|+|||+++++++.++.+|...|.+++|+||+++|+|++ |++|+|||++ ++++.+
T Consensus 165 ~~v~~~~~s-pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~ 243 (321)
T 3ow8_A 165 KFILSIAYS-PDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT 243 (321)
T ss_dssp SCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEE
T ss_pred ceEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEE
Confidence 899999997 7888999999999999999999999999999999999999999999999999 9999999996 999999
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
+.+|..+ |.+++|+|||++|+|++. |++|+|||+.+++|+.++.+|.+
T Consensus 244 ~~~h~~~-----v~~~~~sp~~~~l~s~s~-----------D~~v~iwd~~~~~~~~~~~~h~~---------------- 291 (321)
T 3ow8_A 244 LSGHASW-----VLNVAFCPDDTHFVSSSS-----------DKSVKVWDVGTRTCVHTFFDHQD---------------- 291 (321)
T ss_dssp ECCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTTTEEEEEECCCSS----------------
T ss_pred EcCCCCc-----eEEEEECCCCCEEEEEeC-----------CCcEEEEeCCCCEEEEEEcCCCC----------------
Confidence 9999988 999999999999999997 79999999999999999999973
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+|||+.|+||+.|++|+|||.
T Consensus 292 ----------------------~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 292 ----------------------QVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp ----------------------CEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred ----------------------cEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 8999999999999999999999999984
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=419.08 Aligned_cols=295 Identities=15% Similarity=0.250 Sum_probs=261.6
Q ss_pred EEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce
Q 011452 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG 196 (485)
Q Consensus 117 iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~ 196 (485)
.+.|... .....++.+ |...|++++|+|+++.||++|. | ++++||++.+|++.. .+. +|...+.
T Consensus 91 ~~~~~~~-~~~~~~l~g-h~~~V~~~~~~p~~~~l~s~s~----D------g~i~vwd~~~~~~~~---~l~-~h~~~V~ 154 (410)
T 1vyh_C 91 PKEWIPR-PPEKYALSG-HRSPVTRVIFHPVFSVMVSASE----D------ATIKVWDYETGDFER---TLK-GHTDSVQ 154 (410)
T ss_dssp -CCCCCC-SSCSCEEEC-CSSCEEEEEECSSSSEEEEEES----S------SCEEEEETTTCCCCE---EEC-CCSSCEE
T ss_pred ccccccC-CCceEeecc-cCCcEEEEEEcCCCCEEEEEeC----C------CeEEEEECCCCcEEE---EEe-ccCCcEE
Confidence 4455433 344556776 8889999999999999999884 3 599999999998732 333 3556778
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.|+|+ |+|++|++|+.|++|||||+.+++++.++.+ +.|.+|+|+|++.++++++ .|++|++||+++|+++++|.
T Consensus 155 ~v~~~-~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s--~D~~i~~wd~~~~~~~~~~~ 231 (410)
T 1vyh_C 155 DISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFT 231 (410)
T ss_dssp EEEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEE
T ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEe
Confidence 99998 7999999999999999999999999998864 5899999999776666654 45899999999999999999
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC--------------------CcE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE--------------------NQL 334 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd--------------------g~l 334 (485)
+|...+..++|+ +++..+++++.|++|+|||+.++++...+.+|...|.+++|+|+ |.+
T Consensus 232 ~h~~~v~~~~~~-~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 232 GHREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred CCCccEEEEEEC-CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 999999999996 77888999999999999999999999999999999999999997 678
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
|+|++ |++|+|||++ |+++.++.+|..+ |++|+|+|+|++|+|++. |++|+|||+.+++|+.
T Consensus 311 l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~-----v~~v~~~~~g~~l~s~s~-----------D~~i~vwd~~~~~~~~ 374 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMK 374 (410)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCE
T ss_pred EEEEeCCCeEEEEECCCCceEEEEECCCCc-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCceEE
Confidence 99999 9999999996 9999999999988 999999999999999997 7999999999999999
Q ss_pred EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 413 KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 413 tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
++.+|.+ .|++|+|+|+++.|||||.|++|+||+.
T Consensus 375 ~~~~h~~--------------------------------------~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 375 TLNAHEH--------------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECCSS--------------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEcCCCC--------------------------------------cEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999983 8999999999999999999999999984
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-50 Score=396.55 Aligned_cols=288 Identities=12% Similarity=0.169 Sum_probs=251.5
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
.++..+|.+ |...|++++|+|||+.|+++|. | ++++||++.+++... .+. .+..++..++|+ |+
T Consensus 45 ~~~~~~l~g-H~~~v~~~~~s~d~~~l~s~s~----D------g~v~iWd~~~~~~~~---~~~-~~~~~v~~~~~s-~~ 108 (340)
T 1got_B 45 MRTRRTLRG-HLAKIYAMHWGTDSRLLLSASQ----D------GKLIIWDSYTTNKVH---AIP-LRSSWVMTCAYA-PS 108 (340)
T ss_dssp CCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------TEEEEEETTTCCEEE---EEE-CSSSCEEEEEEC-TT
T ss_pred chhheeecC-CCCceEEEEECCCCCEEEEEeC----C------CcEEEEECCCCCcce---Eee-cCCccEEEEEEC-CC
Confidence 345667887 8889999999999999999874 4 599999998887632 222 244567789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCe----EEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYT----MLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~----~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
|++|++++.|++|+|||+.+++ ....+. ...|.+++|+|++.+++++ .|++|+|||+++|+++.++.+|..
T Consensus 109 ~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s---~d~~i~~wd~~~~~~~~~~~~h~~ 185 (340)
T 1got_B 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEE---TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEE---CCCcEEEEECCCCcEEEEEcCCCC
Confidence 9999999999999999998753 455554 4589999999988877663 458999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
.+..++|+ |++..+++++.|++|+|||+++++++.++.+|...|.+++|+|++++|+|++ |++|+|||++ ++++.++
T Consensus 186 ~v~~~~~~-~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~ 264 (340)
T 1got_B 186 DVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ceEEEEEC-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEE
Confidence 99999997 6788889999999999999999999999999999999999999999999999 9999999996 8888887
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
..+.. .+.|.+++|+|||++|++|+. |++|+|||+.+++++.++.+|.+
T Consensus 265 ~~~~~---~~~v~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~~~~h~~----------------- 313 (340)
T 1got_B 265 SHDNI---ICGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN----------------- 313 (340)
T ss_dssp CCTTC---CSCEEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECCSS-----------------
T ss_pred ccCCc---ccceEEEEECCCCCEEEEECC-----------CCeEEEEEcccCcEeeEeecCCC-----------------
Confidence 63321 123899999999999999997 79999999999999999999983
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+|||+.|||||.|++|+|||
T Consensus 314 ---------------------~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 314 ---------------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------cEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 899999999999999999999999997
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-50 Score=415.03 Aligned_cols=313 Identities=13% Similarity=0.231 Sum_probs=276.5
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.+..+|..++|+ +++|++++.|+++++|+.. ++++.++.+ |...|.+++|+|||+.|++++. | +++
T Consensus 219 ~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~-~~~~~~~~~-~~~~v~~v~~~~d~~~l~~~~~----d------~~i 286 (577)
T 2ymu_A 219 GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVNGVAFRPDGQTIASASD----D------KTV 286 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSCEEEECTT-SCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCE
T ss_pred cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEEec-CCCCEEEEEEcCCCCEEEEEeC----C------CEE
Confidence 367789999998 8899999999999999965 999998887 8889999999999999999773 4 589
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll 248 (485)
++|+. .+++. ..+. .+...+..++|+ |+|++|++++.|++|++||+.+ ..+.++. ...|.+++|+|++.++
T Consensus 287 ~~w~~-~~~~~---~~~~-~h~~~v~~~~~~-~~~~~l~t~~~d~~i~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l 359 (577)
T 2ymu_A 287 KLWNR-NGQLL---QTLT-GHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTI 359 (577)
T ss_dssp EEEET-TSCEE---EEEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEeC-CCcEE---EEEe-cCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEE
Confidence 99994 66652 1222 345567789998 7999999999999999999765 4455554 4689999999977776
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
++++. |++|+|||. +|+++.++.+|...+..|+|+ |++..|++++.|++|+|||. ++++++++.+|...|.+++|
T Consensus 360 ~~~~~--dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s-~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~ 434 (577)
T 2ymu_A 360 ASASD--DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFS-PDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 434 (577)
T ss_dssp EEEET--TSEEEEEET-TCCEEEEEECCSSCEEEEEEC-TTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEE
T ss_pred EEEeC--CCEEEEEcC-CCCEEEEecCCCCCeEEEEEC-CCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEE
Confidence 66543 489999995 789999999999999999996 78889999999999999995 58889999999999999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
+||+++|++++ |++|++||.+++++.++.+|... |.+++|+|||++||+++. |++|+||| .+
T Consensus 435 s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~-----v~~~~~spd~~~las~~~-----------d~~i~iw~-~~ 497 (577)
T 2ymu_A 435 SPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSS-----VRGVAFSPDGQTIASASD-----------DKTVKLWN-RN 497 (577)
T ss_dssp CTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSC-----EEEEEECTTSCEEEEEET-----------TSEEEEEE-TT
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC-----------CCEEEEEc-CC
Confidence 99999999999 99999999999999999999977 999999999999999997 79999999 57
Q ss_pred CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 408 GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 408 Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|++++++.+|.+ .|++|+|+|||++||||+.|++|+|||
T Consensus 498 ~~~~~~~~~h~~--------------------------------------~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 498 GQLLQTLTGHSS--------------------------------------SVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp SCEEEEEECCSS--------------------------------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEeCCCC--------------------------------------CEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 999999999973 899999999999999999999999998
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=405.15 Aligned_cols=312 Identities=13% Similarity=0.112 Sum_probs=231.3
Q ss_pred CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
..+++.+.+...+.|++....+. .|+..|++|+|||||++||++|.+.. .+=-.++++|+..+|.+.....
T Consensus 17 ~~~~~~~g~~~~~~w~~p~~~p~-----~H~~~V~~v~fSpDG~~las~s~d~~----~~wd~~v~~~~~~~~~~~~~~~ 87 (357)
T 4g56_B 17 NLYFQSNGSSKGSAWGRPVTAPA-----CMEVQIGAVRYRRDGALLLAASSLSS----RTWGGSIWVFKDPEGAPNESLC 87 (357)
T ss_dssp ----------------------------CCCSEEEEEEECSSSCEEEEEECSSS----SSCCEEEEEESSCC---CGGGC
T ss_pred ceEEecCCCccccccCCCCCCcc-----cccCCEEEEEECCCCCEEEEEcCCCC----ccccCeEEEEECCCCCcceeEe
Confidence 45566677888899998754432 38889999999999999999885432 1111689999988887644322
Q ss_pred eeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE----E--cCCcEEEEEEcCCceEEEEEcCCCCeeE
Q 011452 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----I--SDKNVQEIKISPGIMLLIFTKASGHVPL 259 (485)
Q Consensus 186 lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t----l--~~~~V~~VafSpg~~ll~sss~~~D~tI 259 (485)
....++...+..|+|+ |++++|+ ++.|++|||||+.+++++.. . |...|.+|+|||++.++++++ .|++|
T Consensus 88 ~~~~~~~~~V~~~~~s-~d~~~l~-~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs--~dg~v 163 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWV-SEKGILV-ASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG--KDFSV 163 (357)
T ss_dssp SEEEECSSCEEEEEEE-TTTEEEE-EETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE--TTSCE
T ss_pred cccCCCCCCEEEEEEc-CCCCEEE-EECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe--CCCeE
Confidence 2222344557789998 6887765 67799999999999886532 2 345899999999777666655 45899
Q ss_pred EEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCC-CcEEE
Q 011452 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYE-NQLFL 336 (485)
Q Consensus 260 klWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspd-g~lla 336 (485)
+|||+++|+++.+|++|...+..|+|++..+..+++++.|++|+|||+++++++..+ ..|...+.+++|+|+ +++||
T Consensus 164 ~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la 243 (357)
T 4g56_B 164 KVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA 243 (357)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence 999999999999999999999999997433357788899999999999999887665 456778999999997 56899
Q ss_pred EEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 337 TFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 337 S~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
+++ |++|+|||++ ++++.++.+|... |++|+|+||| ++|||++. |++|+|||+.+|+++.+
T Consensus 244 ~g~~d~~i~~wd~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~~lasgs~-----------D~~i~iwd~~~~~~~~~ 307 (357)
T 4g56_B 244 CGDETGNVSLVNIKNPDSAQTSAVHSQN-----ITGLAYSYHSSPFLASISE-----------DCTVAVLDADFSEVFRD 307 (357)
T ss_dssp EEESSSCEEEEESSCGGGCEEECCCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTSCEEEEE
T ss_pred EeecccceeEEECCCCcEeEEEecccee-----EEEEEEcCCCCCEEEEEeC-----------CCEEEEEECCCCcEeEE
Confidence 998 9999999996 9999999999987 9999999998 68999987 79999999999999987
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC-CCCEEEEecCCCcEEEccC
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE-DRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp-Dg~~LaSgs~DgtVklWd~ 485 (485)
+ +|.+ .|++|+|+| |++.|||||.||+|++|++
T Consensus 308 ~-~H~~--------------------------------------~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 308 L-SHRD--------------------------------------FVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp C-CCSS--------------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred C-CCCC--------------------------------------CEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 6 7873 899999999 8999999999999999984
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=389.50 Aligned_cols=289 Identities=11% Similarity=0.172 Sum_probs=248.7
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG 205 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG 205 (485)
+...+|.+ |...|++++|+|||+.|||+|. | ++++||+..+++... .+. .+..++..++|+ |+|
T Consensus 55 ~~~~~l~g-H~~~V~~~~~s~d~~~l~s~s~----D------g~v~vWd~~~~~~~~---~~~-~~~~~v~~~~~s-p~g 118 (354)
T 2pbi_B 55 KTRRTLKG-HGNKVLCMDWCKDKRRIVSSSQ----D------GKVIVWDSFTTNKEH---AVT-MPCTWVMACAYA-PSG 118 (354)
T ss_dssp CEEEEEEC-CSSCEEEEEECTTSSEEEEEET----T------SEEEEEETTTCCEEE---EEE-CSSSCCCEEEEC-TTS
T ss_pred EEEEEecC-CCCeEEEEEECCCCCEEEEEeC----C------CeEEEEECCCCCcce---EEe-cCCCCEEEEEEC-CCC
Confidence 45567877 8889999999999999999874 4 599999988887632 222 245677899998 899
Q ss_pred eEEEEeeCCCcEEEeecCCC------e--EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 206 KVLTYSAQDSIYKVFDLKNY------T--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g------~--~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
++||+++.|+++++|++... . .....|...|.+++|+|++..+++++ .|++|+|||+++|+++.+|.+|.
T Consensus 119 ~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s--~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 119 CAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTAS--GDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp SEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEECCS
T ss_pred CEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEe--CCCcEEEEeCCCCeEEEEEcCCC
Confidence 99999999999999998643 1 22334667899999998665555544 45899999999999999999999
Q ss_pred cceeEEEEEec-CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE
Q 011452 278 HRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 354 (485)
Q Consensus 278 ~~~~~V~f~~~-~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~ 354 (485)
..+..++|.+. ++..|++++.|++|+|||++++++++++.+|...|++++|+|++++|+|++ |++|+|||++ ++.+.
T Consensus 197 ~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~ 276 (354)
T 2pbi_B 197 ADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA 276 (354)
T ss_dssp SCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred CCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 99999999743 356888899999999999999999999999999999999999999999999 9999999996 77888
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
.+..+... ..+.+++|+|||++|++++. |++|+|||+.+|+++.++.+|.+
T Consensus 277 ~~~~~~~~---~~~~~~~~s~~g~~l~~g~~-----------d~~i~vwd~~~~~~~~~l~~h~~--------------- 327 (354)
T 2pbi_B 277 IYSKESII---FGASSVDFSLSGRLLFAGYN-----------DYTINVWDVLKGSRVSILFGHEN--------------- 327 (354)
T ss_dssp EECCTTCC---SCEEEEEECTTSSEEEEEET-----------TSCEEEEETTTCSEEEEECCCSS---------------
T ss_pred EEcCCCcc---cceeEEEEeCCCCEEEEEEC-----------CCcEEEEECCCCceEEEEECCCC---------------
Confidence 77755421 23889999999999999987 79999999999999999999983
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+|||+.|+|||.|++|+||+
T Consensus 328 -----------------------~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 328 -----------------------RVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -----------------------CEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -----------------------cEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 899999999999999999999999996
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=394.60 Aligned_cols=300 Identities=12% Similarity=0.130 Sum_probs=227.4
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCCcCcccceeeecccc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDAGFALFESESLK 193 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~~~~~~~lf~~~~~~ 193 (485)
..|.|++..+...+ +...|.+++|||||++|+++| ++ +.+++...+|... ......+......++..
T Consensus 15 ~~r~w~~~~~~~~~-----~~~~v~~~~fs~dG~~l~~~s----d~--~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (344)
T 4gqb_B 15 AAREWNLPPNAPAC-----MERQLEAARYRSDGALLLGAS----SL--SGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEA 83 (344)
T ss_dssp --------CCSCSS-----CCSEEEEEEECTTSCEEEEEE----CC--SSSCCCEEEEEESSGGGTTCGGGCSEEEEESS
T ss_pred cccccCCCCCCccc-----ccCCEEEEEECCCCCEEEEEe----CC--ceEEeeceeeeeccccccCCcceeeeeeccCC
Confidence 45788876554332 566799999999999998876 22 2223332333221 11111111111112223
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE------cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl------~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG 267 (485)
.+..|+|+ ||++ |++|+.|++|||||+.+++++.++ |...|.+|+|||++.++++++ .|++|+|||+++|
T Consensus 84 ~v~~~~~s-~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs--~d~~i~iwd~~~~ 159 (344)
T 4gqb_B 84 GVADLTWV-GERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS--KDICIKVWDLAQQ 159 (344)
T ss_dssp CEEEEEEE-TTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTT
T ss_pred CEEEEEEe-CCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe--CCCeEEEEECCCC
Confidence 46789998 6764 678899999999999998754332 346899999999877777755 4589999999999
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcC-CCcEEEEEe-CCcE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLY-ENQLFLTFR-NRTV 343 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFsp-dg~llaS~s-D~TI 343 (485)
+++++|.+|...+..++|++.....+++++.|++|+|||++++++...+. .|...+.+++|+| ++++|++++ |++|
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v 239 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTV 239 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEE
T ss_pred cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcE
Confidence 99999999999999999974333467788999999999999999988774 4566899999998 567899999 9999
Q ss_pred EEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 344 AVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
+|||++ ++++.+|++|... |++|+|+||| ++|||+|. |++|+|||+.+|+++ ++.+|.+
T Consensus 240 ~~wd~~~~~~~~~~~~h~~~-----v~~v~fsp~g~~~lasgs~-----------D~~i~vwd~~~~~~~-~~~~H~~-- 300 (344)
T 4gqb_B 240 SLVDTKSTSCVLSSAVHSQC-----VTGLVFSPHSVPFLASLSE-----------DCSLAVLDSSLSELF-RSQAHRD-- 300 (344)
T ss_dssp EEEESCC--CCEEEECCSSC-----EEEEEECSSSSCCEEEEET-----------TSCEEEECTTCCEEE-EECCCSS--
T ss_pred EEEECCCCcEEEEEcCCCCC-----EEEEEEccCCCeEEEEEeC-----------CCeEEEEECCCCcEE-EEcCCCC--
Confidence 999996 9999999999988 9999999998 58999987 799999999999876 5789973
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecCCCcEEEccC
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+|||+ .|+|||.|++|++|++
T Consensus 301 ------------------------------------~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 301 ------------------------------------FVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp ------------------------------------CEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred ------------------------------------CEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 899999999997 5789999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-50 Score=402.49 Aligned_cols=304 Identities=13% Similarity=0.154 Sum_probs=255.8
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
.++..|+..+..+.++|.+ |...|++|+|+|+|+.|||+|. | ++++||++.+++... .+. .+..+
T Consensus 46 ~~~~~~~~~~~~~~~~l~g-H~~~V~~~~~sp~~~~l~s~s~----D------~~v~iWd~~~~~~~~---~~~-~h~~~ 110 (380)
T 3iz6_a 46 RTAVSFNPTDLVCCRTLQG-HSGKVYSLDWTPEKNWIVSASQ----D------GRLIVWNALTSQKTH---AIK-LHCPW 110 (380)
T ss_dssp GGCCCCCCCCCEEEEEECC-CSSCEEEEEECTTSSCEEEEET----T------SEEEEEETTTTEEEE---EEE-CCCTT
T ss_pred ccccccccceeEEeecccc-cccEEEEEEEcCCCCEEEEEeC----C------CeEEEEECCCCccce---EEe-cCCCC
Confidence 3455677777888889988 8889999999999999999884 4 599999998887622 233 35567
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-------EEEEE--cCCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEec
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSI--SDKNVQEIKISPG-IMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-------~l~tl--~~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi 264 (485)
+..++|+ |+|++||+++.|++|+|||+.+.. ...++ |...|.+++|+|+ ...+++++ .|++|+|||+
T Consensus 111 v~~~~~s-~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s--~D~~i~~wd~ 187 (380)
T 3iz6_a 111 VMECAFA-PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS--GDQTCVLWDV 187 (380)
T ss_dssp CCCCEEC-TTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC--TTSCEEEECT
T ss_pred EEEEEEC-CCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC--CCCcEEEEEc
Confidence 7889998 899999999999999999997532 22333 3457999999983 44344433 5689999999
Q ss_pred CCCeEEEEe-----ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 265 EDGTVLKSF-----NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 265 ~tG~~L~tl-----~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
++|+++.++ .+|...+..++|.++++..+++++.|++|+|||++ +++++.++.+|...|++++|+|+|++|+|+
T Consensus 188 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~ 267 (380)
T 3iz6_a 188 TTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTG 267 (380)
T ss_dssp TTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEE
T ss_pred CCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEE
Confidence 999999998 67888899999987778889999999999999998 568899999999999999999999999999
Q ss_pred e-CCcEEEEeCC-CcEEEEeecCCCCC--CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 339 R-NRTVAVWNFR-GELVTSFEDHLLWH--PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~-G~ll~tl~gH~~~~--~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+ |++|+|||++ |+++.++..|.... ....|.+++|+|+|++|++|+. ||+|+|||+.+++++.++
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~-----------dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYS-----------NGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECT-----------TSCEEEEETTTCCEEEEE
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEEC-----------CCCEEEEECCCCceEEEE
Confidence 9 9999999996 99999988764321 1123789999999999999986 799999999999999988
Q ss_pred ----cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 ----RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ----~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+|.+ .|++|+|+|||+.|||||.|++|+||+.
T Consensus 337 ~~~~~~h~~--------------------------------------~v~~l~~s~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 337 GTLQNSHEG--------------------------------------RISCLGLSSDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CCSCSSCCC--------------------------------------CCCEEEECSSSSEEEEECTTSCEEEEEC
T ss_pred ecccCCCCC--------------------------------------ceEEEEECCCCCEEEEeeCCCCEEEEec
Confidence 56652 8999999999999999999999999984
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-48 Score=379.40 Aligned_cols=285 Identities=11% Similarity=0.105 Sum_probs=244.3
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
..+++.+ |.+.|++|+|+|+|+.|++++. | ++++||++.+|+... .+.. +...+..++|+ |+|+
T Consensus 5 ~~~~~~~-h~~~V~~~~fsp~~~~l~s~~~----d------g~v~lWd~~~~~~~~---~~~~-~~~~v~~~~~~-~~~~ 68 (304)
T 2ynn_A 5 IKKTFSN-RSDRVKGIDFHPTEPWVLTTLY----S------GRVELWNYETQVEVR---SIQV-TETPVRAGKFI-ARKN 68 (304)
T ss_dssp CEEEEEE-ECSCEEEEEECSSSSEEEEEET----T------SEEEEEETTTTEEEE---EEEC-CSSCEEEEEEE-GGGT
T ss_pred eEEeecC-CCCceEEEEECCCCCEEEEEcC----C------CcEEEEECCCCceeE---Eeec-cCCcEEEEEEe-CCCC
Confidence 4557777 8889999999999999999774 4 599999998887522 2322 33456789998 7999
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeecCCcceeEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKV 283 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~~~~~~~~V 283 (485)
+|++|+.|++|+|||+.+++++.++.+ ..|.+|+|+|++.++++++ .|++|+|||++++ .+.+++.+|.+.+.+|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 999999999999999999999988864 5799999999777666655 4589999999988 5667899999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcC--CCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFsp--dg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
+|+|.++..|++++.|++|+|||++++++...+ .+|...+..+.|+| ++++|+|++ |++|+|||++ ++++.+|++
T Consensus 147 ~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~ 226 (304)
T 2ynn_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (304)
T ss_dssp EECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCC
Confidence 998556778999999999999999988765554 46667899999976 889999999 9999999996 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|... |..++|+|++++|||++. ||+|+|||+.++++++++..|..
T Consensus 227 h~~~-----v~~~~~~p~~~~l~s~s~-----------Dg~i~iWd~~~~~~~~~~~~~~~------------------- 271 (304)
T 2ynn_A 227 HMSN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE------------------- 271 (304)
T ss_dssp CSSC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCCEEEEECCSSS-------------------
T ss_pred CCCC-----EEEEEECCCCCEEEEEcC-----------CCeEEEEECCCCceeeeccCCCc-------------------
Confidence 9987 999999999999999997 79999999999999999999862
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCC--EEEEecCCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRN--EIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~--~LaSgs~DgtVklWd 484 (485)
.|++++|+|+|. .||+|+.||.+ +|+
T Consensus 272 -------------------~~~~~~~~~~~~~~~~asg~~~g~~-~~~ 299 (304)
T 2ynn_A 272 -------------------RSWCIATHPTGRKNYIASGFDNGFT-VLS 299 (304)
T ss_dssp -------------------SEEEEEECTTCGGGCEEEEETTEEE-EEE
T ss_pred -------------------cEEEEEECCCCCceEEEEecCCceE-EEE
Confidence 899999999986 58999877755 554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=373.26 Aligned_cols=296 Identities=10% Similarity=0.142 Sum_probs=246.4
Q ss_pred cEEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc--eeeeccccCceEEEEeC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA--LFESESLKWPGFVEFDD 202 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~--lf~~~~~~~~~~V~Fs~ 202 (485)
.+..+|.+ |...|++|+|+|++ ++|+|+|. | +++++|++..+....+.+ .|. +|...+..++|+
T Consensus 8 ~l~~~l~g-H~~~V~~l~~~~~~~~~l~s~s~----D------~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s- 74 (319)
T 3frx_A 8 VLRGTLEG-HNGWVTSLATSAGQPNLLLSASR----D------KTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLT- 74 (319)
T ss_dssp EEEEEECC-CSSCEEEEEECSSCTTEEEEEET----T------SEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEEC-
T ss_pred EEEEEEcc-ccceEEEEEccCCCccEEEEecC----C------ccEEEecCCCCCccccccceEEe-CCcccEEEEEEC-
Confidence 34457877 89999999999975 89999774 4 599999986543321122 222 355667789998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
|+|++|++++.|++|||||+.+++++.++.+ ..|.+|+|+|++.++++++ .|++|+|||++ ++++.++.+|...+
T Consensus 75 ~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s--~D~~i~vwd~~-~~~~~~~~~h~~~v 151 (319)
T 3frx_A 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGS--RDKTIKVWTIK-GQCLATLLGHNDWV 151 (319)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEE--TTSCEEEEETT-SCEEEEECCCSSCE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEe--CCCeEEEEECC-CCeEEEEeccCCcE
Confidence 7999999999999999999999999988864 5899999999777666655 45899999995 78999999999999
Q ss_pred eEEEEEec-----CCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE
Q 011452 281 KKVDFIEQ-----FNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV 353 (485)
Q Consensus 281 ~~V~f~~~-----~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll 353 (485)
..+.|.+. ++..+++++.|++|++||++++++...+.+|...|++++|+|+|++|+|++ |++|+|||+. ++++
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~ 231 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM 231 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence 99999742 234788899999999999999999999999999999999999999999999 9999999996 9999
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
.++..|. . |.+++|+|||.+|++++. +.|++|++.++.++..+..+...
T Consensus 232 ~~~~~~~-~-----v~~~~~sp~~~~la~~~~------------~~i~v~~~~~~~~~~~~~~~~~~------------- 280 (319)
T 3frx_A 232 YTLSAQD-E-----VFSLAFSPNRYWLAAATA------------TGIKVFSLDPQYLVDDLRPEFAG------------- 280 (319)
T ss_dssp EEEECCS-C-----EEEEEECSSSSEEEEEET------------TEEEEEEETTEEEEEEECCCCTT-------------
T ss_pred EEecCCC-c-----EEEEEEcCCCCEEEEEcC------------CCcEEEEeCcCeeeeccCccccc-------------
Confidence 9998764 3 899999999999999874 67999999999999998765410
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.. ..+...|.+|+|||||+.|+||+.|++|+|||+
T Consensus 281 ----~~-------------~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~ 315 (319)
T 3frx_A 281 ----YS-------------KAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315 (319)
T ss_dssp ----CC-------------GGGCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ----cc-------------cCcCcceeEEEECCCCCEEEEeecCceEEEEEE
Confidence 00 001137999999999999999999999999984
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=377.30 Aligned_cols=318 Identities=12% Similarity=0.073 Sum_probs=271.7
Q ss_pred cccceEEEEEe--cC-EEEEEeCCCeEEeeec----ccCc------EEEEeec---------CCcccEEEEEEeeCCCEE
Q 011452 94 KRSKIIEIVAA--RD-IVFALAQSGVCAAFCR----ETNQ------RICFLNV---------TADEVIRSLFYNKNNDSL 151 (485)
Q Consensus 94 ~~s~V~~i~~s--~~-~ias~s~dgtiklW~~----~tG~------~l~tl~g---------~~~~~i~sv~~spdg~~L 151 (485)
+..+|..+.|+ ++ +||+++.||++++|++ .+|+ ....+.. +|...|.+++|+|+|+.|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 123 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI 123 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence 34455555555 77 9999999999999999 8888 4555533 156689999999999999
Q ss_pred EEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl 231 (485)
|+++. | ++++||+ ..|+... .+. .+...+..++|+ |+|++|++++.|++|++||+.+++++..+
T Consensus 124 ~~~~~----d------g~i~i~~-~~~~~~~---~~~-~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 124 VTGVE----N------GELRLWN-KTGALLN---VLN-FHRAPIVSVKWN-KDGTHIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp EEEET----T------SCEEEEE-TTSCEEE---EEC-CCCSCEEEEEEC-TTSSEEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEeC----C------CeEEEEe-CCCCeee---ecc-CCCccEEEEEEC-CCCCEEEEEecCCeEEEEECCCCcEEEEe
Confidence 99774 3 4899999 6676521 222 244567789998 79999999999999999999999998888
Q ss_pred cC--Cc---------------EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEE
Q 011452 232 SD--KN---------------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 232 ~~--~~---------------V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll 294 (485)
.. .. |.+++|+|++.+++++ .|+.|++||+.+++++..+.+|...+..++|+ |++..|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~ 263 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG---PKGAIFVYQITEKTPTGKLIGHHGPISVLEFN-DTNKLLL 263 (425)
T ss_dssp CCC---------------CCCBSCCEEEETTEEEEEC---GGGCEEEEETTCSSCSEEECCCSSCEEEEEEE-TTTTEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCCCEEEEEc---CCCeEEEEEcCCCceeeeeccCCCceEEEEEC-CCCCEEE
Confidence 63 23 8999999988887763 45899999999999999999999999999997 6788999
Q ss_pred EEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEE
Q 011452 295 VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 295 s~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sva 372 (485)
+++.|++|+|||+++++++..+.+|...|.+++|+|++ +|++++ |++|++||++ ++++..+.+|... |.+++
T Consensus 264 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~ 337 (425)
T 1r5m_A 264 SASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVP-----IFAGR 337 (425)
T ss_dssp EEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCC-----EEEEE
T ss_pred EEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCcc-----EEEEE
Confidence 99999999999999999999999999999999999999 888998 9999999996 9999999999877 99999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--------------------EEEEecCCCCCCCCcccccCCCC
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK--------------------CLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk--------------------~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
|+|||++|++++. ||+|+|||+.+++ ++.++.+|..
T Consensus 338 ~s~~~~~l~~~~~-----------dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 393 (425)
T 1r5m_A 338 ISQDGQKYAVAFM-----------DGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD------------- 393 (425)
T ss_dssp ECTTSSEEEEEET-----------TSCEEEEECHHHHC--------------CEECCEEEEECCTTC-------------
T ss_pred EcCCCCEEEEEEC-----------CCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc-------------
Confidence 9999999999987 7999999999999 9999999862
Q ss_pred CCCCccccccccccccccchhcccC-CeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALE-DITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~-~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. .|++++|+|||+.||+|+.||+|+||++
T Consensus 394 ------------------------~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 394 ------------------------NDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp ------------------------CCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred ------------------------CCceEEEEccCCCceEEEEecCceEEEEee
Confidence 1 7999999999999999999999999985
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-48 Score=392.88 Aligned_cols=279 Identities=9% Similarity=0.133 Sum_probs=249.4
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
-|+.+|..+.|+ +.+||+++.||+|++||..+|++++++.+ |...|++|+|+|+|+.||++|. | +++
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs~----D------~~i 174 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSA----D------MTI 174 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCC
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEeC----C------CeE
Confidence 378899999999 89999999999999999999999999988 8889999999999999999884 3 589
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLL 248 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll 248 (485)
+||++..+++.. .+. +|...+..|+|+ |+|++|++++.|++|++||+.+++++.++.+ ..|..++|+|++.++
T Consensus 175 ~iwd~~~~~~~~---~~~-~h~~~V~~v~~~-p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l 249 (410)
T 1vyh_C 175 KLWDFQGFECIR---TMH-GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI 249 (410)
T ss_dssp CEEETTSSCEEE---CCC-CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred EEEeCCCCceeE---EEc-CCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence 999998777622 222 244567789998 7999999999999999999999999988864 579999999977777
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-------------------CCCEEEEEeCCCcEEEEECCC
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-------------------FNEKLLVKQENENLQILDVRN 309 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~-------------------~~~~lls~s~D~tIkIWDv~t 309 (485)
++++. |++|+|||+.+++++.++.+|.+.+..++|++. .+..|++++.|++|+|||+++
T Consensus 250 ~s~s~--D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 250 ASCSN--DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEcC--CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 76554 589999999999999999999999999999742 145788899999999999999
Q ss_pred CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
++++.++.+|...|.+++|+|+|++|+|++ |++|+|||+. ++++.++.+|... |.+++|+|++.+|||||.
T Consensus 328 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~-----v~~l~~~~~~~~l~sgs~-- 400 (410)
T 1vyh_C 328 GMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV-- 400 (410)
T ss_dssp TEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET--
T ss_pred CceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCc-----EEEEEEcCCCCEEEEEeC--
Confidence 999999999999999999999999999999 9999999996 9999999999987 999999999999999997
Q ss_pred CCCCCCcCCCCeEEEEeC
Q 011452 388 SDDPLAEGNAGSINISNI 405 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl 405 (485)
|++|+|||+
T Consensus 401 ---------D~~i~vW~~ 409 (410)
T 1vyh_C 401 ---------DQTVKVWEC 409 (410)
T ss_dssp ---------TSEEEEEC-
T ss_pred ---------CCcEEEEeC
Confidence 799999985
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-47 Score=378.82 Aligned_cols=291 Identities=12% Similarity=0.120 Sum_probs=240.8
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
.+++.++.++++..|++|+|||+|+.||++|. | ++++||++..++... ...+..+|...+..|+|+ |+
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~----D------~~i~iw~~~~~~~~~-~~~~~~~h~~~v~~~~~s-p~ 72 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGG----D------RRIRIWGTEGDSWIC-KSVLSEGHQRTVRKVAWS-PC 72 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEET----T------SCEEEEEEETTEEEE-EEEECSSCSSCEEEEEEC-TT
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcC----C------CeEEEEEcCCCccee-eeeeccccCCcEEEEEEC-CC
Confidence 46777888844448999999999999999774 4 599999987765311 111222455667889998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCe--EEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC---eEEEEeecCC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYT--MLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG---TVLKSFNHLL 277 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~--~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG---~~L~tl~~~~ 277 (485)
|++||+++.|++|+|||+.+++ ++.++.+ ..|.+|+|+|++.++++++. |++|+|||+.++ +++..+.+|.
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~--D~~v~iwd~~~~~~~~~~~~~~~h~ 150 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR--DKSVWVWEVDEEDEYECVSVLNSHT 150 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET--TSCEEEEEECTTSCEEEEEEECCCC
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC--CCeEEEEECCCCCCeEEEEEecCcC
Confidence 9999999999999999998764 6777764 58999999997777766554 589999999877 4678889999
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR----- 349 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~----- 349 (485)
..+..|+|+ |++..|++++.|++|+|||+++++ +..++.+|...|++++|+|+|++|||++ |++|+|||..
T Consensus 151 ~~v~~~~~~-p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~ 229 (345)
T 3fm0_A 151 QDVKHVVWH-PSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229 (345)
T ss_dssp SCEEEEEEC-SSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCT
T ss_pred CCeEEEEEC-CCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCC
Confidence 999999997 678899999999999999999885 5678899999999999999999999999 9999999951
Q ss_pred -----------CcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--------
Q 011452 350 -----------GELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK-------- 409 (485)
Q Consensus 350 -----------G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk-------- 409 (485)
.+++.++.+ |... |++|+|+|++.+||+++. |++|+||++.++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~~~~~~~l~s~~~-----------d~~i~vw~~~~~~~~~~~~~~ 293 (345)
T 3fm0_A 230 QGVACSGSDPSWKCICTLSGFHSRT-----IYDIAWCQLTGALATACG-----------DDAIRVFQEDPNSDPQQPTFS 293 (345)
T ss_dssp TCCCCC---CEEEEEEEECSSCSSC-----EEEEEECTTTCCEEEEET-----------TSCEEEEEECTTSCTTSCCEE
T ss_pred ccceeeccCCccceeEEecCCCCCc-----EEEEEEecCCCEEEEEeC-----------CCeEEEEEeCCCCCcceeeEE
Confidence 246778877 6655 999999999999999997 7999999987653
Q ss_pred -EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEcc
Q 011452 410 -CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 410 -~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd 484 (485)
....+.+|. ..|++|+|+|++ ..|||||.||+|+||+
T Consensus 294 ~~~~~~~~h~--------------------------------------~~V~~v~~~p~~~~~laS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 294 LTAHLHQAHS--------------------------------------QDVNCVAWNPKEPGLLASCSDDGEVAFWK 332 (345)
T ss_dssp EEEEETTSSS--------------------------------------SCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred EEeeeccccc--------------------------------------CcEeEeEEeCCCceEEEEcCCCCcEEEEE
Confidence 122335665 289999999998 4999999999999997
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-47 Score=374.15 Aligned_cols=278 Identities=15% Similarity=0.153 Sum_probs=243.8
Q ss_pred ccccceEEEEEe------cCEEEEEeCCCeEEeeecccCcE--EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcc
Q 011452 93 RKRSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQR--ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 93 ~~~s~V~~i~~s------~~~ias~s~dgtiklW~~~tG~~--l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~st 164 (485)
-|..+|.+|+|+ +++||+++.|+++|+|+..+++. ..++.+ |...|.+++|+|++..|+++|. |
T Consensus 30 ~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~g-h~~~v~~~~~~~~~~~l~s~s~----D--- 101 (321)
T 3ow8_A 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEG-HQLGVVSVDISHTLPIAASSSL----D--- 101 (321)
T ss_dssp SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECSSSSEEEEEET----T---
T ss_pred cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeecc-CCCCEEEEEECCCCCEEEEEeC----C---
Confidence 366677777775 46899999999999999887764 335666 8889999999999999999774 4
Q ss_pred cceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc
Q 011452 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS 242 (485)
Q Consensus 165 L~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS 242 (485)
++++|||+.+|+... .+.. +...+..++|+ |+|++|++++.|++|++||+.+++..+++. ...|.+++|+
T Consensus 102 ---~~i~lWd~~~~~~~~---~~~~-~~~~~~~~~~s-pdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~s 173 (321)
T 3ow8_A 102 ---AHIRLWDLENGKQIK---SIDA-GPVDAWTLAFS-PDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYS 173 (321)
T ss_dssp ---SEEEEEETTTTEEEE---EEEC-CTTCCCCEEEC-TTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEEC
T ss_pred ---CcEEEEECCCCCEEE---EEeC-CCccEEEEEEC-CCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEEC
Confidence 599999998887622 2322 23345689998 899999999999999999999999988885 4579999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCc
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMT 322 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~ 322 (485)
|++.++++++. |++|+|||+++|+++.++.+|...+.+++|+ |++..|++++.|++|+|||+++++++.++.+|...
T Consensus 174 pdg~~lasg~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~s-pd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~ 250 (321)
T 3ow8_A 174 PDGKYLASGAI--DGIINIFDIATGKLLHTLEGHAMPIRSLTFS-PDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASW 250 (321)
T ss_dssp TTSSEEEEEET--TSCEEEEETTTTEEEEEECCCSSCCCEEEEC-TTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSC
T ss_pred CCCCEEEEEcC--CCeEEEEECCCCcEEEEEcccCCceeEEEEc-CCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCc
Confidence 97777776554 4899999999999999999999999999997 67888999999999999999999999999999999
Q ss_pred eEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 323 PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 323 v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
|.+++|+|++++|+|++ |++|+|||++ ++++.+|.+|... |++|+|+|||++|+|++. |++|
T Consensus 251 v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~-----v~~v~~s~~g~~l~s~~~-----------d~~i 314 (321)
T 3ow8_A 251 VLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ-----VWGVKYNGNGSKIVSVGD-----------DQEI 314 (321)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCCE
T ss_pred eEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCc-----EEEEEECCCCCEEEEEeC-----------CCeE
Confidence 99999999999999999 9999999996 9999999999877 999999999999999997 7999
Q ss_pred EEEeC
Q 011452 401 NISNI 405 (485)
Q Consensus 401 klWdl 405 (485)
+|||.
T Consensus 315 ~vwd~ 319 (321)
T 3ow8_A 315 HIYDC 319 (321)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-47 Score=381.63 Aligned_cols=278 Identities=15% Similarity=0.243 Sum_probs=241.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-----------------ccccCceE
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-----------------ESLKWPGF 197 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----------------~~~~~~~~ 197 (485)
|...|.+++|||||++||+++ + ++++||++.+|++.. .+.. ....++..
T Consensus 63 h~~~V~~v~fspdg~~la~g~----~-------~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC----N-------KTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC----B-------SCEEEEETTTCCEEE---EECC-----------------CCCCBEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc----C-------CcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEE
Confidence 888999999999999999854 3 388999998887622 1111 01123668
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~ 275 (485)
|+|+ |||++||+|+.|++|+|||+.+++++.++.+ ..|.+++|+|++.++++++ .|++|+|||+++|+++.++.+
T Consensus 129 v~~s-~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~ 205 (393)
T 1erj_A 129 VCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS--GDRTVRIWDLRTGQCSLTLSI 205 (393)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred EEEC-CCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEec--CCCcEEEEECCCCeeEEEEEc
Confidence 9998 7999999999999999999999999988864 5799999999776666655 458999999999999999874
Q ss_pred CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-------ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-------RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-------~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
...+..++|++.++..+++++.|++|+|||+++++++..+ .+|...|++++|+|+|++|+|++ |++|+|||
T Consensus 206 -~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 206 -EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp -SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred -CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 4678899998657888999999999999999999988776 68999999999999999999999 99999999
Q ss_pred CC-------------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 348 FR-------------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 348 ~~-------------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
++ +.+..++.+|..+ |.+++|+|+|++|+|++. |++|+|||+.+|+++.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~~l~sgs~-----------D~~v~iwd~~~~~~~~~l 348 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK-----------DRGVLFWDKKSGNPLLML 348 (393)
T ss_dssp C---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-----------TSEEEEEETTTCCEEEEE
T ss_pred CCCCCCcccccCCCCCcceEEEecccCc-----EEEEEECCCCCEEEEEeC-----------CCeEEEEECCCCeEEEEE
Confidence 84 4567889999988 999999999999999997 799999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC------CCCEEEEecCCCcEEEcc
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE------DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp------Dg~~LaSgs~DgtVklWd 484 (485)
.+|.+ .|++|+|+| +++.|||||.||+|+||+
T Consensus 349 ~~h~~--------------------------------------~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 349 QGHRN--------------------------------------SVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ECCSS--------------------------------------CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred CCCCC--------------------------------------CEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 99983 899999986 789999999999999997
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-46 Score=371.12 Aligned_cols=290 Identities=17% Similarity=0.150 Sum_probs=235.7
Q ss_pred cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec-cccCceEEEEeC
Q 011452 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE-SLKWPGFVEFDD 202 (485)
Q Consensus 124 tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~ 202 (485)
+.+++.+|.+ |.+.|++++|+|+ .||++|. | ++++||++..++... ...+... |...+..|+|+
T Consensus 3 ~~~~~~~~~~-h~~~v~~~~~s~~--~las~~~----D------~~i~lw~~~~~~~~~-~~~~~~~~h~~~v~~v~~s- 67 (330)
T 2hes_X 3 SINLIKSLKL-YKEKIWSFDFSQG--ILATGST----D------RKIKLVSVKYDDFTL-IDVLDETAHKKAIRSVAWR- 67 (330)
T ss_dssp CCEEEEEEEC-CSSCEEEEEEETT--EEEEEES----S------SCEEEEECSSSCCEE-EEEECTTCCCSCEEEEEEC-
T ss_pred ccccceeecc-CCCceeeeccCCC--EEEEEcC----C------CEEEEEEecCCCeEE-EEEEecCCccCCEEEEEEC-
Confidence 4567888887 8889999999997 8988774 4 599999997764311 1122122 55567789998
Q ss_pred CCCeEEEEeeCCCcEEEeecC-------CCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecC-C---CeE
Q 011452 203 VNGKVLTYSAQDSIYKVFDLK-------NYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIE-D---GTV 269 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~-------~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~-t---G~~ 269 (485)
|+|++||+++.|++|||||+. +++++.++.+ ..|.+|+|||++.++++++. |++|+|||+. . .++
T Consensus 68 p~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~--D~~v~iwd~~~~~~~~~~ 145 (330)
T 2hes_X 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR--DKSVWIWETDESGEEYEC 145 (330)
T ss_dssp TTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET--TSCEEEEECCTTCCCCEE
T ss_pred CCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC--CCEEEEEeccCCCCCeEE
Confidence 799999999999999999985 3456777754 58999999997777776554 5899999994 2 368
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC--eeEEecccCCCceEEEEEcCC--CcEEEEEe-CCcEE
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF--ELTEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVA 344 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg--~~~~~l~gh~~~v~avaFspd--g~llaS~s-D~TIk 344 (485)
+.++.+|...+..|+|+ |++..|++++.|++|||||+.++ +++.++.+|...|++++|+|+ +.+|+|++ |++|+
T Consensus 146 ~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~ 224 (330)
T 2hes_X 146 ISVLQEHSQDVKHVIWH-PSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVR 224 (330)
T ss_dssp EEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEE
T ss_pred EEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEE
Confidence 89999999999999997 67889999999999999999877 788999999999999999999 78999999 99999
Q ss_pred EEeCC-C--------cEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--EEE
Q 011452 345 VWNFR-G--------ELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK--CLA 412 (485)
Q Consensus 345 lWd~~-G--------~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk--~l~ 412 (485)
|||++ + +++.++.+ |..+ |.+|+|+|++ +|||++. ||+|+|||+.+|+ ++.
T Consensus 225 iw~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~v~~s~~~-~l~s~~~-----------dg~v~iw~~~~~~~~~~~ 287 (330)
T 2hes_X 225 VWKYMGDDEDDQQEWVCEAILPDVHKRQ-----VYNVAWGFNG-LIASVGA-----------DGVLAVYEEVDGEWKVFA 287 (330)
T ss_dssp EEEEEEECTTSCEEEEEEEECCSCCSSC-----EEEEEECTTS-CEEEEET-----------TSCEEEEEEETTEEEEEE
T ss_pred EEEecCCCccccceeEEeeecccccccc-----eEEEEEcCCC-EEEEEeC-----------CCEEEEEEcCCCceEEEe
Confidence 99985 4 56777776 8776 9999999776 7899886 7999999998884 444
Q ss_pred Ee-cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC--CCCEEEEecCCCcEEEccC
Q 011452 413 KI-RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE--DRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 413 tl-~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp--Dg~~LaSgs~DgtVklWd~ 485 (485)
++ .+|.. ..|++|+|+| |++.|||||.||+|+||+.
T Consensus 288 ~~~~~h~~-------------------------------------~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 288 KRALCHGV-------------------------------------YEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EESCTTTT-------------------------------------SCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred cccccccc-------------------------------------ceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 43 56752 1799999999 7999999999999999984
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=368.95 Aligned_cols=278 Identities=11% Similarity=0.150 Sum_probs=239.6
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|..+|.++.|+ +++||+++.||++++||..+++++.++.. |...|.+++|+|+|+.||+++. | ++++
T Consensus 54 H~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~~----d------~~v~ 122 (340)
T 1got_B 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGL----D------NICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEET----T------CEEE
T ss_pred CCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEeC----C------CeEE
Confidence 55666666666 89999999999999999999999999887 8889999999999999999774 4 5999
Q ss_pred EeEeccCCcCcc-cceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEE
Q 011452 172 IEYIRRGKPDAG-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLL 248 (485)
Q Consensus 172 lw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll 248 (485)
||++..++.... ...+. ++...+..+.|+ ++++ |++++.|++|+|||+.+++++.++.+ ..|.+++|+|++.++
T Consensus 123 iw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 123 IYNLKTREGNVRVSRELA-GHTGYLSCCRFL-DDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEETTTCSBSCEEEEEEE-CCSSCEEEEEEE-ETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEECccCCCcceeEEEec-CCCccEEEEEEC-CCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 999876643110 01111 345566788997 5776 78889999999999999999999864 579999999977777
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--CCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT--EFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g--h~~~v~av 326 (485)
++++. |++|+|||+.+|+++.++.+|...+..|+|+ |++..|++++.|++|+|||+++++++..+.. +...|.++
T Consensus 200 ~sg~~--d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 200 VSGAC--DASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEET--TSCEEEEETTTCSEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEEeC--CCcEEEEECCCCeeEEEEcCCcCCEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 66554 5899999999999999999999999999997 6788999999999999999999998877653 33479999
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+|+|+|++|++++ |++|+|||+. ++++.+|.+|... |.+++|+|||++||||+. |++|+|||
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~s~-----------D~~i~iWd 340 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIWN 340 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEEC
T ss_pred EECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCc-----EEEEEEcCCCCEEEEEcC-----------CccEEecC
Confidence 9999999999999 9999999995 9999999999988 999999999999999997 79999997
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=365.35 Aligned_cols=290 Identities=12% Similarity=0.112 Sum_probs=244.8
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND 149 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~ 149 (485)
+.++..|..|..++.++.|.|. +++||+++.||++++||.++++++.++.+ |...|+++.|+|+++
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-------------~~~l~s~~~dg~v~lWd~~~~~~~~~~~~-~~~~v~~~~~~~~~~ 68 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLYSGRVELWNYETQVEVRSIQV-TETPVRAGKFIARKN 68 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-------------SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT
T ss_pred ceeEEeecCCCCceEEEEECCC-------------CCEEEEEcCCCcEEEEECCCCceeEEeec-cCCcEEEEEEeCCCC
Confidence 4455667777666666666666 99999999999999999999999999987 788999999999999
Q ss_pred EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC-eEE
Q 011452 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML 228 (485)
Q Consensus 150 ~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g-~~l 228 (485)
.|+++|. | ++++||++.+|++.. .|. .|...+..|+|+ |++++|++|+.|++|||||+.++ .+.
T Consensus 69 ~l~s~s~----d------~~i~vwd~~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~l~sgs~D~~v~lWd~~~~~~~~ 133 (304)
T 2ynn_A 69 WIIVGSD----D------FRIRVFNYNTGEKVV---DFE-AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALE 133 (304)
T ss_dssp EEEEEET----T------SEEEEEETTTCCEEE---EEE-CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEEGGGTTEEE
T ss_pred EEEEECC----C------CEEEEEECCCCcEEE---EEe-CCCCcEEEEEEc-CCCCEEEEECCCCeEEEEECCCCcchh
Confidence 9999773 4 599999999988622 233 355667899998 79999999999999999999987 455
Q ss_pred EEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEe-cCCCEEEEEeCCCcEE
Q 011452 229 YSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIE-QFNEKLLVKQENENLQ 303 (485)
Q Consensus 229 ~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~-~~~~~lls~s~D~tIk 303 (485)
.++. ...|.+++|+| ++.++++++ .|++|+|||+.++++..++. +|...+..++|.+ +++..|++++.|++|+
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs--~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGC--LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEE--TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEE
Confidence 6665 45799999998 555555544 45899999999988877775 5556788899875 3556888899999999
Q ss_pred EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC--E
Q 011452 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--L 379 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~--~ 379 (485)
|||+++++++.++.+|...|.+++|+|++++|+|++ |++|+|||++ ++++++|..|... ++.++|+|+|. +
T Consensus 212 iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 286 (304)
T 2ynn_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNY 286 (304)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSS-----EEEEEECTTCGGGC
T ss_pred EEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCcc-----EEEEEECCCCCceE
Confidence 999999999999999999999999999999999999 9999999996 9999999999877 99999999985 6
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
||+|+. +.+.+|++..
T Consensus 287 ~asg~~------------~g~~~~~~~~ 302 (304)
T 2ynn_A 287 IASGFD------------NGFTVLSLGN 302 (304)
T ss_dssp EEEEET------------TEEEEEECC-
T ss_pred EEEecC------------CceEEEEecc
Confidence 888874 6688998764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=356.84 Aligned_cols=291 Identities=14% Similarity=0.171 Sum_probs=249.4
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
.++..++.+ |...|++++|+|+|+.||+++. | ++++||++.+|++.. .+. .+...+..++|+ |+
T Consensus 13 ~~~~~~~~g-h~~~v~~~~~s~~~~~l~s~~~----d------g~i~iw~~~~~~~~~---~~~-~h~~~v~~~~~~-~~ 76 (312)
T 4ery_A 13 YALKFTLAG-HTKAVSSVKFSPNGEWLASSSA----D------KLIKIWGAYDGKFEK---TIS-GHKLGISDVAWS-SD 76 (312)
T ss_dssp CEEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCEEEEETTTCCEEE---EEC-CCSSCEEEEEEC-TT
T ss_pred ceeEEEEcc-cCCcEEEEEECCCCCEEEEeeC----C------CeEEEEeCCCcccch---hhc-cCCCceEEEEEc-CC
Confidence 344556766 8889999999999999999774 3 589999998887632 233 244556789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~ 282 (485)
|++|++++.|++|+|||+.+++++.++.+ ..|.+++|+|++.++++++. |++|++||++++++++++..|...+..
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF--DESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC--CCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 99999999999999999999999988864 57999999997766666543 489999999999999999999999999
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 283 VDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 283 V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
++|+ |++..+++++.|++|+|||+++++++..+ ..|...+..++|+|++++|++++ |++|+|||++ ++++.++.+|
T Consensus 155 ~~~~-~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 233 (312)
T 4ery_A 155 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233 (312)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSS
T ss_pred EEEc-CCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEec
Confidence 9996 67889999999999999999999988775 45667899999999999999999 9999999996 9999999999
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
...... +......+++++|++++. ||+|+|||+.++++++++.+|.+
T Consensus 234 ~~~~~~--~~~~~~~~~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~h~~-------------------- 280 (312)
T 4ery_A 234 KNEKYC--IFANFSVTGGKWIVSGSE-----------DNLVYIWNLQTKEIVQKLQGHTD-------------------- 280 (312)
T ss_dssp CCSSSC--CCEEEECSSSCEEEECCT-----------TSCEEEEETTTCCEEEEECCCSS--------------------
T ss_pred CCceEE--EEEEEEeCCCcEEEEECC-----------CCEEEEEECCCchhhhhhhccCC--------------------
Confidence 764211 334455688999999986 79999999999999999999973
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEec--CCCcEEEccC
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN--RHGLVHVWSN 485 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs--~DgtVklWd~ 485 (485)
.|.+++|+|+++.|+|++ .|++|+||+.
T Consensus 281 ------------------~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 281 ------------------VVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ------------------CEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ------------------cEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 899999999999999997 6999999973
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-48 Score=382.70 Aligned_cols=342 Identities=12% Similarity=0.085 Sum_probs=260.0
Q ss_pred eEEEEEe--cC-EEEEE----------eCCCeEEeeecccCc---EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCC
Q 011452 98 IIEIVAA--RD-IVFAL----------AQSGVCAAFCRETNQ---RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN 161 (485)
Q Consensus 98 V~~i~~s--~~-~ias~----------s~dgtiklW~~~tG~---~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d 161 (485)
|..++|+ ++ +||++ +.|+++++|+..+++ ++.++ .|...|.+++|+|+|++||+++. |
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~----d 88 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL--QVDSKFNDLDWSHNNKIIAGALD----N 88 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC--CCSSCEEEEEECSSSSCEEEEES----S
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE--ecCCceEEEEECCCCCeEEEEcc----C
Confidence 3334444 65 88998 899999999999886 44444 37788999999999999999774 3
Q ss_pred CcccceeEEEEeEeccCCcCc-ccceeeeccccCceEEEEeCCC-CeEEEEeeCCCcEEEeecCCCe------EEEEE--
Q 011452 162 FSSLRCRSTRIEYIRRGKPDA-GFALFESESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT------MLYSI-- 231 (485)
Q Consensus 162 ~stL~~~t~~lw~i~~G~~~~-~~~lf~~~~~~~~~~V~Fs~pn-G~~Las~s~D~tiKlWdl~~g~------~l~tl-- 231 (485)
++++||++....... -...+. .+...+..++|+ |+ +++|++++.|++|+|||+.+++ ....+
T Consensus 89 ------g~v~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 160 (416)
T 2pm9_A 89 ------GSLELYSTNEANNAINSMARFS-NHSSSVKTVKFN-AKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQ 160 (416)
T ss_dssp ------SCEEEECCSSTTSCCCEEEECC-CSSSCCCEEEEC-SSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCC
T ss_pred ------CeEEEeecccccccccchhhcc-CCccceEEEEEc-CCCCCEEEEEcCCCeEEEEECCCCcccccccccccccc
Confidence 589999986621100 011122 345567799998 66 8999999999999999999887 44433
Q ss_pred ---cCCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCeEEEEeecC------CcceeEEEEEecCC-CEEEEEeCCC
Q 011452 232 ---SDKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHL------LHRNKKVDFIEQFN-EKLLVKQENE 300 (485)
Q Consensus 232 ---~~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~------~~~~~~V~f~~~~~-~~lls~s~D~ 300 (485)
+...|.+++|+|+ +.++++++ .|++|+|||+++++++.++..| ...+..++|+ |++ ..+++++.|+
T Consensus 161 ~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 161 SMSSVDEVISLAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH-PKNSTRVATATGSD 237 (416)
T ss_dssp SCCSSCCCCEEEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC-SSCTTEEEEEECCS
T ss_pred ccCCCCCeeEEEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC-CCCCCEEEEEECCC
Confidence 3468999999986 56666544 4589999999999999999876 6778999997 555 5777788998
Q ss_pred ---cEEEEECCCC-eeEEecc-cCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEE
Q 011452 301 ---NLQILDVRNF-ELTEVSR-TEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 301 ---tIkIWDv~tg-~~~~~l~-gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~sva 372 (485)
+|+|||++++ +++..+. +|...|.+++|+| ++++|++++ |++|+|||++ ++++.++.+|..+ |.+++
T Consensus 238 ~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~-----v~~~~ 312 (416)
T 2pm9_A 238 NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNW-----CFKTK 312 (416)
T ss_dssp SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSC-----CCCEE
T ss_pred CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCc-----eEEEE
Confidence 9999999997 6788888 9999999999999 999999999 9999999996 9999999999987 99999
Q ss_pred ECCCC-CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC---C-CCC-Cc-----ccccCCCCCCCCccccc
Q 011452 373 ITSDQ-DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN---G-LPA-EN-----ECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 373 fSpDG-~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~---~-~~~-~~-----~~~~~~~~~~~~~~~~~ 441 (485)
|+||| ++|++++. |++|+|||+.+++......... + .+. ++ ++..+... ...
T Consensus 313 ~s~~~~~~l~s~~~-----------d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----- 375 (416)
T 2pm9_A 313 FAPEAPDLFACASF-----------DNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPS-VFH----- 375 (416)
T ss_dssp ECTTCTTEEEECCS-----------SSEEEEEESCCCCCSSCC----------------------CCSCCC-SSC-----
T ss_pred ECCCCCCEEEEEec-----------CCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccc-ccc-----
Confidence 99999 89999986 7999999999887654332200 0 000 00 00000000 000
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+ .........|++++|+|||+.||+|+.|++|+||+.
T Consensus 376 ------~-~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~ 412 (416)
T 2pm9_A 376 ------L-QAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNP 412 (416)
T ss_dssp ------C-CCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCC
T ss_pred ------c-cCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEe
Confidence 0 001112247889999999999999999999999984
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=350.09 Aligned_cols=320 Identities=10% Similarity=0.040 Sum_probs=266.6
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+..+|..++|+ |+++|++..++.+..|............+ |.+.|.+++|+|+|+.|++++ | ++++
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~-----d------g~i~ 75 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLN-HGEVVCAVTISNPTRHVYTGG-----K------GCVK 75 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEEC-CSSCCCEEEECSSSSEEEEEC-----B------SEEE
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceecc-CCCceEEEEEecCCcEEEEcC-----C------CeEE
Confidence 45667778887 99999888888777777655444443444 888999999999999998855 2 4999
Q ss_pred EeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCCce
Q 011452 172 IEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPGIM 246 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg~~ 246 (485)
||++..++.......+.. .+...+..++|+ |+|++|++++.|++|++||+.+++ ....+. ...|.+++|+|++.
T Consensus 76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 154 (337)
T 1gxr_A 76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLL-PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154 (337)
T ss_dssp EEETTSTTCCSCSEEEECSCTTSBEEEEEEC-TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS
T ss_pred EEECCCCCceeeeecccccCCCCcEEEEEEc-CCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCC
Confidence 999987765332222221 234556789998 799999999999999999999887 555554 45799999999776
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAF 326 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~av 326 (485)
++++++. |++|++||+++++++.++.+|...+..++|+ |++..|++++.|++|++||+++++++..+ .|...+.++
T Consensus 155 ~l~~~~~--dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-~~~~~v~~~ 230 (337)
T 1gxr_A 155 VCFSCCS--DGNIAVWDLHNQTLVRQFQGHTDGASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSL 230 (337)
T ss_dssp EEEEEET--TSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEE
T ss_pred EEEEEeC--CCcEEEEeCCCCceeeeeecccCceEEEEEC-CCCCEEEEEecCCcEEEEECCCCceEeee-cCCCceEEE
Confidence 6665543 4899999999999999999999999999997 67889999999999999999999998887 477789999
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+|++++|++++ |++|++||++...+..+.+|... |.+++|+|||++|++++. ||+|++||+
T Consensus 231 ~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~i~~~~~ 294 (337)
T 1gxr_A 231 GYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRT 294 (337)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEET
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccc-----eeEEEECCCCCEEEEecC-----------CCcEEEEEC
Confidence 9999999999999 99999999974445678888877 999999999999999987 799999999
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+++++..+ .|. ..|++++|+||++.|++|+.||+|++|++
T Consensus 295 ~~~~~~~~~-~~~--------------------------------------~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 295 PYGASIFQS-KES--------------------------------------SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp TTCCEEEEE-ECS--------------------------------------SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEe-cCC--------------------------------------CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 999998655 454 28999999999999999999999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-45 Score=379.64 Aligned_cols=317 Identities=11% Similarity=0.129 Sum_probs=269.8
Q ss_pred cccceEEEEEe--cC-EEEEEeCCCeEEeeecccCcEEEEeecCCcc---cEEEEEEeeC-CCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--RD-IVFALAQSGVCAAFCRETNQRICFLNVTADE---VIRSLFYNKN-NDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~~-~ias~s~dgtiklW~~~tG~~l~tl~g~~~~---~i~sv~~spd-g~~Las~S~d~~~d~stL~ 166 (485)
+...|..+.|+ ++ +|++++.||++++||..+++++.++.+ |.. .|.+++|+|+ |+.|++++. |
T Consensus 159 ~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~----d----- 228 (615)
T 1pgu_A 159 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-HHKQGSFVRDVEFSPDSGEFVITVGS----D----- 228 (615)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-SSCTTCCEEEEEECSTTCCEEEEEET----T-----
T ss_pred CCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-cCCCCceEEEEEECCCCCCEEEEEeC----C-----
Confidence 56778999999 44 899999999999999999999999987 777 8999999999 999999774 3
Q ss_pred eeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------CcEE
Q 011452 167 CRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KNVQ 237 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------~~V~ 237 (485)
+++++|++.+|++.. .+.. .+...+..++|+ +|++|++++.|++|++||+.+++++.++.. ..+.
T Consensus 229 -g~i~vwd~~~~~~~~---~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 229 -RKISCFDGKSGEFLK---YIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp -CCEEEEETTTCCEEE---ECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred -CeEEEEECCCCCEeE---EecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 589999999888732 3311 344567789996 899999999999999999999999888853 4688
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-----------------------------
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ----------------------------- 288 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~----------------------------- 288 (485)
.+.|+++..+++++ .|++|++||+.+++++.++.+|...+..++| +.
T Consensus 303 ~~~~~~~~~l~~~~---~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~ 378 (615)
T 1pgu_A 303 GVVATGNGRIISLS---LDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSL 378 (615)
T ss_dssp EEEEEETTEEEEEE---TTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEE
T ss_pred EEEeCCCCeEEEEE---CCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEE
Confidence 99998777776653 3489999999999999999887666655554 10
Q ss_pred ---C-------------------------------------------------------------------------CCE
Q 011452 289 ---F-------------------------------------------------------------------------NEK 292 (485)
Q Consensus 289 ---~-------------------------------------------------------------------------~~~ 292 (485)
+ +..
T Consensus 379 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (615)
T 1pgu_A 379 DNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNY 458 (615)
T ss_dssp ECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSE
T ss_pred EECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCE
Confidence 0 334
Q ss_pred EEEEeC-CCcEEEEECCCCeeE-EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeec-CCCCCCCCC
Q 011452 293 LLVKQE-NENLQILDVRNFELT-EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFED-HLLWHPDCN 367 (485)
Q Consensus 293 lls~s~-D~tIkIWDv~tg~~~-~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~~~~~~ 367 (485)
+++++. |++|++||+.++++. ..+.+|...|.+++|+|||++|++++ |++|+|||++ ++++.++.+ |...
T Consensus 459 l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~----- 533 (615)
T 1pgu_A 459 VAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK----- 533 (615)
T ss_dssp EEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC-----
T ss_pred EEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCc-----
Confidence 455555 788888888877665 67788999999999999999999999 9999999995 999999998 9877
Q ss_pred eeEEEECC----------CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC-eEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 368 TNNIYITS----------DQDLIISYCKADSDDPLAEGNAGSINISNILTG-KCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 368 v~svafSp----------DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG-k~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
|++++|+| ||++||+++. ||+|+|||+.++ +++.++.+|..
T Consensus 534 v~~~~~sp~~~~~~~~~~~~~~l~~~~~-----------dg~i~iw~~~~~~~~~~~~~~h~~----------------- 585 (615)
T 1pgu_A 534 INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD----------------- 585 (615)
T ss_dssp EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT-----------------
T ss_pred eeEEEEcCccccccccccCCCEEEEEcC-----------CCcEEEEECCCCceechhhhcCcc-----------------
Confidence 99999999 9999999997 799999999998 89999999973
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+|||+ |+||+.||+|+||++
T Consensus 586 ---------------------~v~~l~~s~~~~-l~s~~~d~~v~iw~~ 612 (615)
T 1pgu_A 586 ---------------------GVNNLLWETPST-LVSSGADACIKRWNV 612 (615)
T ss_dssp ---------------------CEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred ---------------------ceEEEEEcCCCC-eEEecCCceEEEEee
Confidence 899999999999 999999999999984
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=366.99 Aligned_cols=279 Identities=11% Similarity=0.142 Sum_probs=237.3
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|..+|.++.|+ +++||+++.||++++||..+++...++.. |...|.+++|+|+|+.||+++. | ++++
T Consensus 63 H~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~-~~~~v~~~~~sp~g~~lasg~~----d------~~i~ 131 (354)
T 2pbi_B 63 HGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTM-PCTWVMACAYAPSGCAIACGGL----D------NKCS 131 (354)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-SSSCCCEEEECTTSSEEEEEST----T------SEEE
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEec-CCCCEEEEEECCCCCEEEEeeC----C------CCEE
Confidence 44455555555 89999999999999999999999998887 7778999999999999998663 4 5899
Q ss_pred EeEeccCCcCcc---cceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC--C
Q 011452 172 IEYIRRGKPDAG---FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP--G 244 (485)
Q Consensus 172 lw~i~~G~~~~~---~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp--g 244 (485)
+|++..++.... ...+. .|...+..++|+ |+++.|++++.|++|||||+.+++++.++.+ ..|.+++|+| +
T Consensus 132 v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~ 209 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVA-MHTNYLSACSFT-NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSET 209 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEE-ECSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSS
T ss_pred EEEEeccccccccccceeee-ccCCcEEEEEEe-CCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCC
Confidence 999865432110 11122 355667789997 7999999999999999999999999988864 5799999986 3
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC--CCc
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE--FMT 322 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh--~~~ 322 (485)
+.++++++ .|++|++||+.+|++++++.+|...+.+|+|+ |++..|++++.|++|+|||+++++++..+..+ ...
T Consensus 210 g~~l~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 210 GNTFVSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYY-PSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp CCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred CCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEe-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 44555544 45899999999999999999999999999997 67889999999999999999999888777544 347
Q ss_pred eEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 323 PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 323 v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
+.+++|+|+|++|++++ |++|+|||+. |+++.++.+|..+ |.+++|+|||++||||+. |++|
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~-----v~~l~~spdg~~l~sgs~-----------D~~v 350 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENR-----VSTLRVSPDGTAFCSGSW-----------DHTL 350 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSEE
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCc-----EEEEEECCCCCEEEEEcC-----------CCCE
Confidence 89999999999999999 9999999995 9999999999988 999999999999999997 7999
Q ss_pred EEEe
Q 011452 401 NISN 404 (485)
Q Consensus 401 klWd 404 (485)
+||+
T Consensus 351 ~vW~ 354 (354)
T 2pbi_B 351 RVWA 354 (354)
T ss_dssp EEEC
T ss_pred EecC
Confidence 9996
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=348.41 Aligned_cols=305 Identities=11% Similarity=0.123 Sum_probs=244.6
Q ss_pred eecccCcEEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceE
Q 011452 120 FCRETNQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGF 197 (485)
Q Consensus 120 W~~~tG~~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~ 197 (485)
+..++.++..||.| |.+.|++|+|+|+ +++|||+|. | ++++||++..++...+.++... +|...+..
T Consensus 23 ~~~~~~~l~~tL~G-H~~~V~~v~~sp~~~~~l~S~s~----D------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~ 91 (340)
T 4aow_A 23 MMTEQMTLRGTLKG-HNGWVTQIATTPQFPDMILSASR----D------KTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91 (340)
T ss_dssp ---CEEEEEEEECC-CSSCEEEEEECTTCTTEEEEEET----T------SCEEEEEECCSSSCSEEEEEEECCCSSCEEE
T ss_pred ccCCceEEEEEECC-ccCCEEEEEEeCCCCCEEEEEcC----C------CeEEEEECCCCCcccceeeEEEeCCCCCEEE
Confidence 34455667778987 8999999999998 689999874 4 5999999988776443332221 34566778
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE-EEee
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL-KSFN 274 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L-~tl~ 274 (485)
++|+ |||++|++++.|++|++|+...+....... ...+..+.++|.+.++++++ .|+.+++||+...... ..+.
T Consensus 92 ~~~s-~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 92 VVIS-SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGS--RDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp EEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSCEEEEECSS
T ss_pred EEEC-CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeec--CCCeEEEEEeCCCceEEEEec
Confidence 9998 799999999999999999999988766654 46788999998555555544 4589999999776554 3456
Q ss_pred cCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc
Q 011452 275 HLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 351 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ 351 (485)
+|...+..++|.+... ..+++++.|++|++||+++++++..+.+|...|.+++|+|+|++|+|++ |++|+|||++ ++
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~ 248 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK 248 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc
Confidence 7888899999974333 3456678999999999999999999999999999999999999999999 9999999996 99
Q ss_pred EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCC
Q 011452 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGD 431 (485)
Q Consensus 352 ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~ 431 (485)
++..+.+|. . |..++|+|++.+|+++. |++|+|||+.+++++.++..+...
T Consensus 249 ~~~~~~~~~-~-----v~~~~~~~~~~~~~~~~------------d~~i~iwd~~~~~~~~~~~~~~~~----------- 299 (340)
T 4aow_A 249 HLYTLDGGD-I-----INALCFSPNRYWLCAAT------------GPSIKIWDLEGKIIVDELKQEVIS----------- 299 (340)
T ss_dssp EEEEEECSS-C-----EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCC--------------
T ss_pred eeeeecCCc-e-----EEeeecCCCCceeeccC------------CCEEEEEECCCCeEEEecccccee-----------
Confidence 999998774 3 89999999998877654 699999999999999999765410
Q ss_pred CCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 432 YSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.....+...|++|+|+|||+.||||+.||+|+|||+
T Consensus 300 ------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 300 ------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred ------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 000001138999999999999999999999999984
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-45 Score=361.79 Aligned_cols=299 Identities=13% Similarity=0.142 Sum_probs=234.4
Q ss_pred CcEEEEeecCCcccEEEEEE-----ee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc--ccceee-eccccCc
Q 011452 125 NQRICFLNVTADEVIRSLFY-----NK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA--GFALFE-SESLKWP 195 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~-----sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~--~~~lf~-~~~~~~~ 195 (485)
.+++.+|.+ |...|++|+| +| ||+.|||+|. | ++++||++..++... +.++.. .+|...+
T Consensus 11 ~~~~~~l~g-H~~~V~~~~~~~s~~~~~d~~~l~sgs~----D------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V 79 (343)
T 2xzm_R 11 VVKRGILEG-HSDWVTSIVAGFSQKENEDSPVLISGSR----D------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFV 79 (343)
T ss_dssp EEEEEEEEC-CSSCEEEEEECCCSSTTCCCCEEEEEET----T------SCEEEEEECSSCCSSBSEEEEEEECCCSSCE
T ss_pred eeeeeeecc-chhhhhheeeEEEeecCCCCCEEEEEcC----C------CEEEEEECCcCCcccccccccchhccCCCce
Confidence 456677887 8889999999 77 9999999874 4 599999997654321 111111 1355567
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
..|+|+ |+|++|++++.|++|||||+.+++++.++. ...|.+|+|||++.++++++ .|++|+|||+. +++...+
T Consensus 80 ~~~~~~-~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~--~d~~i~~wd~~-~~~~~~~ 155 (343)
T 2xzm_R 80 SDLALS-QENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG--AEREIKLWNIL-GECKFSS 155 (343)
T ss_dssp EEEEEC-SSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEE--TTSCEEEEESS-SCEEEEC
T ss_pred EEEEEC-CCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEc--CCCEEEEEecc-CCceeee
Confidence 789998 799999999999999999999999998885 45899999999776666654 45899999997 5565555
Q ss_pred e---cCCcceeEEEEEecCC----------CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-
Q 011452 274 N---HLLHRNKKVDFIEQFN----------EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR- 339 (485)
Q Consensus 274 ~---~~~~~~~~V~f~~~~~----------~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s- 339 (485)
. +|...+..++|++ ++ ..+++++.|++|+||| .++++..++.+|...|.+++|+|||++|||++
T Consensus 156 ~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~ 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGK 233 (343)
T ss_dssp CTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcC
Confidence 4 6778899999974 43 5788899999999999 45788888999999999999999999999999
Q ss_pred CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE--Eec
Q 011452 340 NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA--KIR 415 (485)
Q Consensus 340 D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~--tl~ 415 (485)
|++|+|||+ + +.+...+. |... |++|+|+|++++|++++ |++|+|||+.+++++. ++.
T Consensus 234 dg~v~iwd~~~~~~~~~~~~-~~~~-----v~~v~~sp~~~~la~~~------------d~~v~iw~~~~~~~~~~~~~~ 295 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFD-AGST-----INQIAFNPKLQWVAVGT------------DQGVKIFNLMTQSKAPVCTIE 295 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEE-CSSC-----EEEEEECSSSCEEEEEE------------SSCEEEEESSSCCSCSEEECC
T ss_pred CCeEEEEECCCCcccceeec-CCCc-----EEEEEECCCCCEEEEEC------------CCCEEEEEeCCCCCCceEEee
Confidence 999999999 4 55566663 3223 89999999999998765 5899999999987655 555
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.. .. .. ... .+...|++|+|+|||+.||+|+.||+|+||+.
T Consensus 296 ~~~~----~~---~~---------~~~-----------~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 296 AEPI----TK---AE---------GQK-----------GKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp CCSG----GG---BT---------TBC-----------CSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred cCcc----hh---hh---------hhc-----------CCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 3210 00 00 000 00137999999999999999999999999983
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-45 Score=369.90 Aligned_cols=283 Identities=11% Similarity=0.073 Sum_probs=224.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeeccc------------CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecC
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET------------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYAS 159 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~t------------G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~ 159 (485)
+...|.++.|+ |++|++++ |+++|+||... +.+...+ .++..|.+|+|+||+ .|+++|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~d~-~l~~~s---- 100 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGV--QTEAGVADLTWVGER-GILVAS---- 100 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEE--EESSCEEEEEEETTT-EEEEEE----
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeee--ccCCCEEEEEEeCCC-eEEEEE----
Confidence 34568888888 89999888 88999997321 1111111 245679999999996 577766
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEE
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQ 237 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~ 237 (485)
+| ++|+|||+.+|+..........+|...+..|+|+ |||++|++|+.|++|||||+.+++++.++.+ ..|.
T Consensus 101 ~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~s-pdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 101 DS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp TT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred CC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 34 5999999999987432222222456678899998 7999999999999999999999999999964 5899
Q ss_pred EEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE
Q 011452 238 EIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE 314 (485)
Q Consensus 238 ~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~ 314 (485)
+++|+|++ .++++++ .|++|+|||+++|+++.++. .|.+.+.+++|++.++..+++++.|++|+|||+++++++.
T Consensus 174 ~~~~~~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 174 CVAASPHKDSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp EEEECSSCTTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCE
T ss_pred EEEecCCCCCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEE
Confidence 99999744 4555544 45899999999999999886 3445678999985555667778999999999999999999
Q ss_pred ecccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCC
Q 011452 315 VSRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDD 390 (485)
Q Consensus 315 ~l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d 390 (485)
++.+|...|++++|+|+| ++|||++ |++|+|||++ |+++ .+.+|... |++|+|+|||+ +|+|++.
T Consensus 252 ~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~-----V~~v~~sp~~~~llas~s~----- 320 (344)
T 4gqb_B 252 SSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDF-----VRDATWSPLNHSLLTTVGW----- 320 (344)
T ss_dssp EEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSC-----EEEEEECSSSTTEEEEEET-----
T ss_pred EEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCC-----EEEEEEeCCCCeEEEEEcC-----
Confidence 999999999999999998 5799999 9999999997 6655 67899988 99999999986 5778886
Q ss_pred CCCcCCCCeEEEEeCCCCeE
Q 011452 391 PLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 391 ~~~~~~DgtIklWdl~TGk~ 410 (485)
|++|++|++.+...
T Consensus 321 ------D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 321 ------DHQVVHHVVPTEPL 334 (344)
T ss_dssp ------TSCEEEEECCC---
T ss_pred ------CCeEEEEECCCCCC
Confidence 79999999987654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-46 Score=418.39 Aligned_cols=322 Identities=12% Similarity=0.082 Sum_probs=253.1
Q ss_pred ccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 93 RKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 93 ~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
.+..+|..|+|+ +++||+++.|++|++||+++|++++++. |...|++++|+|+|+.|++++. | ++++
T Consensus 56 ~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs~----d------g~V~ 123 (902)
T 2oaj_A 56 EDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGLQ----N------GSMI 123 (902)
T ss_dssp SSCCCEEEEEEETTTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEET----T------SCEE
T ss_pred CCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEcC----C------CcEE
Confidence 367899999999 8899999999999999999999999886 4568999999999999999774 3 5999
Q ss_pred EeEeccCCcCcccce-------e-eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC----------
Q 011452 172 IEYIRRGKPDAGFAL-------F-ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------- 233 (485)
Q Consensus 172 lw~i~~G~~~~~~~l-------f-~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---------- 233 (485)
|||+..+++.. ..+ . ...+...+.+|+|+|.++.+|++|+.|++| |||+++++++.++..
T Consensus 124 lwd~~~~~~~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~ 201 (902)
T 2oaj_A 124 VYDIDRDQLSS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGD 201 (902)
T ss_dssp EEETTTTEEEE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCST
T ss_pred EEECCCCcccc-ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcc
Confidence 99998877521 000 0 013456678999994356789999999999 999999999888753
Q ss_pred ----------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE--ee---cC-------------CcceeEEEE
Q 011452 234 ----------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS--FN---HL-------------LHRNKKVDF 285 (485)
Q Consensus 234 ----------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t--l~---~~-------------~~~~~~V~f 285 (485)
..|.+|+|||++.++++++. |++|+|||+.+|+++.. +. +| ...+.+|+|
T Consensus 202 ~~~~~~~~h~~~V~~v~fspdg~~lasgs~--Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w 279 (902)
T 2oaj_A 202 FSEKTNEKRTPKVIQSLYHPNSLHIITIHE--DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYW 279 (902)
T ss_dssp TCCCTTSCBCCCEEEEEECTTSSEEEEEET--TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEE
T ss_pred cccccccccCCCeEEEEEcCCCCEEEEEEC--CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEE
Confidence 35999999997776666554 58999999999999864 31 22 335778888
Q ss_pred Ee---cCCCE----------------------------------------------------------------------
Q 011452 286 IE---QFNEK---------------------------------------------------------------------- 292 (485)
Q Consensus 286 ~~---~~~~~---------------------------------------------------------------------- 292 (485)
++ |++..
T Consensus 280 ~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~ 359 (902)
T 2oaj_A 280 MCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFA 359 (902)
T ss_dssp EECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHH
T ss_pred EecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcC
Confidence 53 22112
Q ss_pred -------EEEEeCCCcEEEEECCCCeeEE-----------------------------------------ecccCCCceE
Q 011452 293 -------LLVKQENENLQILDVRNFELTE-----------------------------------------VSRTEFMTPS 324 (485)
Q Consensus 293 -------lls~s~D~tIkIWDv~tg~~~~-----------------------------------------~l~gh~~~v~ 324 (485)
+++.+.|++|++||+.+|.... .+.||...+.
T Consensus 360 g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~ 439 (902)
T 2oaj_A 360 GCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKR 439 (902)
T ss_dssp HTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCC
T ss_pred CCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCC
Confidence 2333445778888877664321 1345666666
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE----EE--ee-----cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELV----TS--FE-----DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll----~t--l~-----gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
+++|+|||++|||++ |+|||+||++ |++. .. +. +|..+ |++|+|||||++||+|+.
T Consensus 440 sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~-----V~svafspdg~~LAsgs~------ 508 (902)
T 2oaj_A 440 QKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA-----VDKISFAAETLELAVSIE------ 508 (902)
T ss_dssp CCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC-----EEEEEEETTTTEEEEEET------
T ss_pred cccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCc-----eeEEEecCCCCeEEEEec------
Confidence 777899999999999 9999999996 6431 11 22 78877 999999999999999997
Q ss_pred CCcCCCCeEEEEeCCCC---------------------------------------------eEEEEecCCCCCCCCccc
Q 011452 392 LAEGNAGSINISNILTG---------------------------------------------KCLAKIRASNGLPAENEC 426 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TG---------------------------------------------k~l~tl~gH~~~~~~~~~ 426 (485)
||+|||||+.++ +|+++|.+|.
T Consensus 509 -----DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~-------- 575 (902)
T 2oaj_A 509 -----TGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANK-------- 575 (902)
T ss_dssp -----TSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCS--------
T ss_pred -----CcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCC--------
Confidence 799999999887 3577777776
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|++|+||||| +||+|+.|++|+|||.
T Consensus 576 ------------------------------~~V~svafSpdG-~lAsgs~D~tv~lwd~ 603 (902)
T 2oaj_A 576 ------------------------------GKTSAINNSNIG-FVGIAYAAGSLMLIDR 603 (902)
T ss_dssp ------------------------------CSEEEEEECBTS-EEEEEETTSEEEEEET
T ss_pred ------------------------------CcEEEEEecCCc-EEEEEeCCCcEEEEEC
Confidence 399999999999 9999999999999984
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=358.38 Aligned_cols=296 Identities=8% Similarity=0.088 Sum_probs=240.6
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeeccc-----CcEEEEeecCCcccEEEEEE
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRET-----NQRICFLNVTADEVIRSLFY 144 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~t-----G~~l~tl~g~~~~~i~sv~~ 144 (485)
+.|+.+++.|..++.++.+.|. .+++||+++.|+++++|++.+ +.++.++.+ |...|.+++|
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~------------~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~-h~~~v~~~~~ 73 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAG------------QPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKG-HSHIVQDCTL 73 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSS------------CTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEEEEE
T ss_pred EEEEEEEccccceEEEEEccCC------------CccEEEEecCCccEEEecCCCCCccccccceEEeC-CcccEEEEEE
Confidence 4556666666665555555443 037999999999999999864 456778887 8889999999
Q ss_pred eeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC
Q 011452 145 NKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN 224 (485)
Q Consensus 145 spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~ 224 (485)
+|+|+.|+++|. | ++++|||+.+|++. ..|. +|...+..|+|+ |+|++|++++.|++|||||++
T Consensus 74 s~dg~~l~s~s~----D------~~v~~wd~~~~~~~---~~~~-~h~~~v~~~~~~-~~~~~l~s~s~D~~i~vwd~~- 137 (319)
T 3frx_A 74 TADGAYALSASW----D------KTLRLWDVATGETY---QRFV-GHKSDVMSVDID-KKASMIISGSRDKTIKVWTIK- 137 (319)
T ss_dssp CTTSSEEEEEET----T------SEEEEEETTTTEEE---EEEE-CCSSCEEEEEEC-TTSCEEEEEETTSCEEEEETT-
T ss_pred CCCCCEEEEEeC----C------CEEEEEECCCCCee---EEEc-cCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEECC-
Confidence 999999999874 4 59999999988762 2233 345667789998 799999999999999999996
Q ss_pred CeEEEEEcC--CcEEEEEEcCCc------eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 225 YTMLYSISD--KNVQEIKISPGI------MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 225 g~~l~tl~~--~~V~~VafSpg~------~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
++++.++.+ ..|.+++|+|.. .++++++ .|++|++||++++++..++.+|...+..++|+ |++..|+++
T Consensus 138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s-p~g~~l~s~ 214 (319)
T 3frx_A 138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTAS-PDGTLIASA 214 (319)
T ss_dssp SCEEEEECCCSSCEEEEEECCC------CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEEC-TTSSEEEEE
T ss_pred CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEc-CCCCEEEEE
Confidence 567777754 589999999843 3455544 45899999999999999999999999999997 788899999
Q ss_pred eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCC---CCCCeeEEE
Q 011452 297 QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH---PDCNTNNIY 372 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~---~~~~v~sva 372 (485)
+.|++|+|||+.+++++.++.+| ..|.+++|+|++++|+++++..|++|+++ +.++..+..+.... ....+.+++
T Consensus 215 ~~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 293 (319)
T 3frx_A 215 GKDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLA 293 (319)
T ss_dssp ETTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEE
Confidence 99999999999999999999765 58999999999999999987789999997 77787776542210 012288999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|||||++|++|+. |++|+|||+.|++
T Consensus 294 ~spdg~~l~sg~~-----------Dg~i~vWd~~t~~ 319 (319)
T 3frx_A 294 WSADGQTLFAGYT-----------DNVIRVWQVMTAN 319 (319)
T ss_dssp ECTTSSEEEEEET-----------TSCEEEEEEEEC-
T ss_pred ECCCCCEEEEeec-----------CceEEEEEEeecC
Confidence 9999999999997 7999999998753
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=372.42 Aligned_cols=285 Identities=11% Similarity=0.145 Sum_probs=239.4
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|..+|.+|.|+ +++||+++.||+|++||..+++++.++.+ |...|.+++|+|+|+.||+++ .| .+++
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~-h~~~v~~~~~s~~g~~las~~----~d------~~v~ 133 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL-HCPWVMECAFAPNGQSVACGG----LD------SACS 133 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC-CCTTCCCCEECTTSSEEEECC----SS------SCCE
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec-CCCCEEEEEECCCCCEEEEee----CC------CcEE
Confidence 66667777776 89999999999999999999999999987 888999999999999999866 34 5899
Q ss_pred EeEeccCCcCcc----cceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-------cCCcEEEEE
Q 011452 172 IEYIRRGKPDAG----FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-------SDKNVQEIK 240 (485)
Q Consensus 172 lw~i~~G~~~~~----~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-------~~~~V~~Va 240 (485)
||++..+....+ ...+. +|...+..+.|.+.++..|++|+.|++|+|||+.+++++..+ +...|.+++
T Consensus 134 iw~~~~~~~~~~~~~~~~~~~-gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 134 IFNLSSQADRDGNMPVSRVLT-GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp EEECCCCSSCCCSSTTCCBCC-CCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred EEECCCCccccCCccceeecc-CCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 999865432111 11222 345566788998555678999999999999999999998877 235799999
Q ss_pred EcC-CceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 241 ISP-GIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 241 fSp-g~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
|+| ++.++++++ .|++|+|||+. ++++++++.+|.+.+.+|+|+ |++..|++++.|++|+|||+++++++.++..
T Consensus 213 ~~~~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 213 INSLNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFF-PDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp ECSSSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEEC-TTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred eecCCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEe-cCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 985 665555554 45899999997 668899999999999999997 7888999999999999999999999988865
Q ss_pred CCC-------ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe----ecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 319 EFM-------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 319 h~~-------~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl----~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
|.. .|.+++|+|+|++|++++ |++|+|||+. ++++.++ .+|... |++++|+|||++|+|||.
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~dg~~l~sgs~ 364 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-----ISCLGLSSDGSALCTGSW 364 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCC-----CCEEEECSSSSEEEEECT
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCc-----eEEEEECCCCCEEEEeeC
Confidence 533 489999999999999999 9999999995 9999888 678776 999999999999999987
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 386 ADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|++|+||++..++
T Consensus 365 -----------D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 365 -----------DKNLKIWAFSGHR 377 (380)
T ss_dssp -----------TSCEEEEECCSSS
T ss_pred -----------CCCEEEEecCCCc
Confidence 7999999987543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-46 Score=419.27 Aligned_cols=320 Identities=13% Similarity=0.129 Sum_probs=248.3
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEE-----------EEeecCCcccEEEEEEeeCC-CEEEEEEeecC
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRI-----------CFLNVTADEVIRSLFYNKNN-DSLITVSVYAS 159 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l-----------~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~ 159 (485)
+...|..++|+ +++||+++.||+|++||++++++. .++. +|...|++|+|+|++ ..|++++
T Consensus 97 ~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g~---- 171 (902)
T 2oaj_A 97 VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLISY---- 171 (902)
T ss_dssp CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEEC----
T ss_pred CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccc-cCCCCeEEEEEccCCCCEEEEEe----
Confidence 45678888888 999999999999999999988764 2233 377899999999974 6677654
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeee-----------------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeec
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFES-----------------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----------------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl 222 (485)
.| +++ |||++.+++.. .|.. .+...+..|+|+ |||++||+++.|++|+|||+
T Consensus 172 ~d------g~v-lWd~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fs-pdg~~lasgs~Dg~i~lWd~ 240 (902)
T 2oaj_A 172 EY------VTL-TYSLVENEIKQ---SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYH-PNSLHIITIHEDNSLVFWDA 240 (902)
T ss_dssp SS------CEE-EEETTTTEEEE---EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEEC-TTSSEEEEEETTCCEEEEET
T ss_pred CC------CcE-EEECCCCceEE---EEecccCCcCCCcccccccccccCCCeEEEEEc-CCCCEEEEEECCCeEEEEEC
Confidence 44 589 99998887632 2221 122457789998 79999999999999999999
Q ss_pred CCCeEEEE--E-----c-------------CCcEEEEEEc----CC-ceEEEEEcCC-----------------------
Q 011452 223 KNYTMLYS--I-----S-------------DKNVQEIKIS----PG-IMLLIFTKAS----------------------- 254 (485)
Q Consensus 223 ~~g~~l~t--l-----~-------------~~~V~~VafS----pg-~~ll~sss~~----------------------- 254 (485)
++++++.. + + ...|.+|+|+ |+ ..++++++.+
T Consensus 241 ~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s 320 (902)
T 2oaj_A 241 NSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS 320 (902)
T ss_dssp TTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred CCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence 99998764 3 1 1269999995 43 3444444221
Q ss_pred ---------------------------------------------------CCeeEEEEecCCCeEEEE-----------
Q 011452 255 ---------------------------------------------------GHVPLKILSIEDGTVLKS----------- 272 (485)
Q Consensus 255 ---------------------------------------------------~D~tIklWdi~tG~~L~t----------- 272 (485)
.|++|++||+.+|+.+..
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~ 400 (902)
T 2oaj_A 321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL 400 (902)
T ss_dssp HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence 024577777777754322
Q ss_pred ------------------------------eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--e----c
Q 011452 273 ------------------------------FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--V----S 316 (485)
Q Consensus 273 ------------------------------l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~----l 316 (485)
|.||...+..|+|+ |++..|++++.|+||||||+.++++.. . +
T Consensus 401 ~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~s-pdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l 479 (902)
T 2oaj_A 401 RPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPA-EYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNL 479 (902)
T ss_dssp TTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCC-SEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEH
T ss_pred CCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCccccc-ccCcEEEEecCCCcEEEEECCCccccCCceEEeec
Confidence 22333344445554 567788889999999999999885321 1 1
Q ss_pred -----ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C---------------------------------------
Q 011452 317 -----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--------------------------------------- 350 (485)
Q Consensus 317 -----~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G--------------------------------------- 350 (485)
.+|...|++|+|+|||++||+++ |++|+|||++ +
T Consensus 480 ~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (902)
T 2oaj_A 480 SRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPT 559 (902)
T ss_dssp HHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCT
T ss_pred hhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCC
Confidence 28999999999999999999999 9999999995 5
Q ss_pred ------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE--Eec----CCC
Q 011452 351 ------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA--KIR----ASN 418 (485)
Q Consensus 351 ------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~--tl~----gH~ 418 (485)
+++.+|++|..+ |++|+||||| +||+|+. |++|+|||+.+++.+. .+. +|+
T Consensus 560 ~~~~g~~~~~~l~~h~~~-----V~svafSpdG-~lAsgs~-----------D~tv~lwd~~~~~~~~~~~~~~~~~gh~ 622 (902)
T 2oaj_A 560 GVRQGFMPSTAVHANKGK-----TSAINNSNIG-FVGIAYA-----------AGSLMLIDRRGPAIIYMENIREISGAQS 622 (902)
T ss_dssp TCSEEEEEEEEECCCSCS-----EEEEEECBTS-EEEEEET-----------TSEEEEEETTTTEEEEEEEGGGTCSSCC
T ss_pred CCCCccceeEEEEcCCCc-----EEEEEecCCc-EEEEEeC-----------CCcEEEEECCCCeEEEEeehhHhccccc
Confidence 358899999988 9999999999 9999997 7999999999888775 332 665
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc-----CCC---CEEEEecCCCcEEEccC
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD-----EDR---NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs-----pDg---~~LaSgs~DgtVklWd~ 485 (485)
.+|++|+|| ||| +.|+||+.|++|++||+
T Consensus 623 --------------------------------------~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 623 --------------------------------------ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp --------------------------------------CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred --------------------------------------cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 289999999 886 89999999999999984
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=408.72 Aligned_cols=368 Identities=15% Similarity=0.205 Sum_probs=296.8
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|...|..++|+ +++||+++.||+|++||..+|+++.++.+ |...|.+++|+|||+.||+++. | ++++
T Consensus 614 h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~~~----d------~~v~ 682 (1249)
T 3sfz_A 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA-HEDEVLCCAFSSDDSYIATCSA----D------KKVK 682 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SEEE
T ss_pred ccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc-CCCCEEEEEEecCCCEEEEEeC----C------CeEE
Confidence 78889999999 99999999999999999999999999987 8889999999999999999773 4 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCC-CCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLL 248 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll 248 (485)
||++.+|++.. .|. .+...+..++|++. ++.+|++++.|++|+|||+.+++++.++.+ ..|.+++|+|++.++
T Consensus 683 vwd~~~~~~~~---~~~-~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l 758 (1249)
T 3sfz_A 683 IWDSATGKLVH---TYD-EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELL 758 (1249)
T ss_dssp EEETTTCCEEE---EEE-CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEE
T ss_pred EEECCCCceEE---EEc-CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEE
Confidence 99999998732 333 35566778999832 667999999999999999999999998864 589999999977666
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEee------------------------------------------------------
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFN------------------------------------------------------ 274 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~------------------------------------------------------ 274 (485)
++++. |++|++||+.++++++++.
T Consensus 759 ~s~s~--dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~ 836 (1249)
T 3sfz_A 759 ASCSA--DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIH 836 (1249)
T ss_dssp EEEES--SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEE
T ss_pred EEEEC--CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEc
Confidence 66543 4899999999888776653
Q ss_pred -cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC---
Q 011452 275 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--- 349 (485)
Q Consensus 275 -~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--- 349 (485)
+|...+..++|+ |++..+++++.|++|++||+.+++++..+.+|...|.+++|+|+|++|+|++ |++|++||+.
T Consensus 837 ~~~~~~v~~~~~s-p~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~ 915 (1249)
T 3sfz_A 837 TGHHSTIQYCDFS-PYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVC 915 (1249)
T ss_dssp CSSSSCCCEEEEC-SSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHH
T ss_pred CCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccc
Confidence 566677889996 6788899999999999999999999999999999999999999999999999 9999999731
Q ss_pred -----------------------------------------------------------------------------CcE
Q 011452 350 -----------------------------------------------------------------------------GEL 352 (485)
Q Consensus 350 -----------------------------------------------------------------------------G~l 352 (485)
+++
T Consensus 916 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~ 995 (1249)
T 3sfz_A 916 KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV 995 (1249)
T ss_dssp SCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC
T ss_pred eeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce
Confidence 445
Q ss_pred EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC---------------------------C--CCCCcCCCCeEEEE
Q 011452 353 VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS---------------------------D--DPLAEGNAGSINIS 403 (485)
Q Consensus 353 l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~---------------------------~--d~~~~~~DgtIklW 403 (485)
+.++.+|... |.+++|+|||++|+|++.|.. . .-.+.+.|++|++|
T Consensus 996 ~~~~~~h~~~-----v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vw 1070 (1249)
T 3sfz_A 996 FSSGVGHKKA-----VRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVW 1070 (1249)
T ss_dssp EEECCCCSSC-----CCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEE
T ss_pred eeecccCCCc-----eEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEE
Confidence 5667778766 899999999999999986311 0 01234567888888
Q ss_pred eCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccc-----ccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 404 NILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHAS-----RIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 404 dl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
|+.+|+++.++.+|.+ +....+.+++++.+.++..+...... ....+...+...|++++|+|||+.||||+.||
T Consensus 1071 d~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg 1149 (1249)
T 3sfz_A 1071 NVITGRIERDFTCHQG-TVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149 (1249)
T ss_dssp ETTTTCCCEEEECCSS-CCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTS
T ss_pred ECCCCceeEEEcccCC-cEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCC
Confidence 8888999999999875 34556666666654444332221111 11122223345899999999999999999999
Q ss_pred cEEEccC
Q 011452 479 LVHVWSN 485 (485)
Q Consensus 479 tVklWd~ 485 (485)
+|+|||.
T Consensus 1150 ~i~vwd~ 1156 (1249)
T 3sfz_A 1150 EIRIWNV 1156 (1249)
T ss_dssp CCCEEES
T ss_pred EEEEEEC
Confidence 9999984
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=369.56 Aligned_cols=286 Identities=9% Similarity=0.074 Sum_probs=221.2
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee------ccccCceEEEEeCCCCeEEEE
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES------ESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~------~~~~~~~~V~Fs~pnG~~Las 210 (485)
-+|++|+|+|||+.||+++.+.+. +.+ -..++||++..+.......+... .+-.++.+++|+ +..+++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~--sGi-~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~ 88 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGN--NGI-PNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILV 88 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSS--SSC-CEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccc--cCC-CCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEE
Confidence 379999999999999998743321 001 04799999866554211111110 122345566665 444444
Q ss_pred -----------eeCCCcEEEeecCCCe-EE---EEEc-------CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 211 -----------SAQDSIYKVFDLKNYT-ML---YSIS-------DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 211 -----------~s~D~tiKlWdl~~g~-~l---~tl~-------~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
++.|+++|+|++.+++ .+ .... +..|..|+|||++.+++.++.+.|++|||||+++++
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~ 168 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLT 168 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTE
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCc
Confidence 4578999999987654 22 2221 246999999998877766666778999999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEcCCCcEEEEEe-CC----
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFLYENQLFLTFR-NR---- 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFspdg~llaS~s-D~---- 341 (485)
++.++. |.+.+.+|+|+ |++..+++++ |+++++|+..+++++. +..+|...|++++|+|||+++++++ |+
T Consensus 169 ~~~~~~-~~~~V~~v~fs-pdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 169 EKFEIE-TRGEVKDLHFS-TDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEE-CSSCCCEEEEC-TTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred EEEEeC-CCCceEEEEEc-cCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 999997 55789999997 6777777666 5567777777776643 4567999999999999999999999 87
Q ss_pred cEEEEeCC-CcE----EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe-c
Q 011452 342 TVAVWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI-R 415 (485)
Q Consensus 342 TIklWd~~-G~l----l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl-~ 415 (485)
+|++||+. ++. ...+.+|... |++++|||||++||+|+. |++|+|||+.+|+++.++ +
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~~~~-----V~~~~~Spdg~~lasgs~-----------D~~V~iwd~~~~~~~~~~~~ 309 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNRFKG-----ITSMDVDMKGELAVLASN-----------DNSIALVKLKDLSMSKIFKQ 309 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESSCSC-----EEEEEECTTSCEEEEEET-----------TSCEEEEETTTTEEEEEETT
T ss_pred EEeecccccceecceeeeeecCCCCC-----eEeEEECCCCCceEEEcC-----------CCEEEEEECCCCcEEEEecC
Confidence 78999984 442 4578899877 999999999999999997 799999999999999985 7
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+|.+ .|++|+|||||++|||||.|+|||||++
T Consensus 310 gH~~--------------------------------------~V~~v~fSpdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 310 AHSF--------------------------------------AITEVTISPDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp SSSS--------------------------------------CEEEEEECTTSCEEEEEETTSEEEEEEC
T ss_pred cccC--------------------------------------CEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence 8983 8999999999999999999999999985
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-45 Score=365.13 Aligned_cols=287 Identities=12% Similarity=0.123 Sum_probs=223.6
Q ss_pred cccccceEEEEEe--cCEEEEEeC------CCeEEeeecccCcEEEEe---ecCCcccEEEEEEeeCCCEEEEEEeecCC
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQ------SGVCAAFCRETNQRICFL---NVTADEVIRSLFYNKNNDSLITVSVYASD 160 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~------dgtiklW~~~tG~~l~tl---~g~~~~~i~sv~~spdg~~Las~S~d~~~ 160 (485)
..|...|.+|+|+ |++||++|. |+++++|+..+|....++ ...|...|.+|+|+|++..| +++ .
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s----~ 113 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VAS----D 113 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEE----T
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEE----C
Confidence 3577788888888 999999998 788999998877643222 22377789999999998755 444 2
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEE
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQE 238 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~ 238 (485)
| ++++||++.+|+......+-..+|...+..|+|+ |||++|++++.|++|+|||+.+++++..+.+ ..|.+
T Consensus 114 d------g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~s-pdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~ 186 (357)
T 4g56_B 114 S------GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVF-SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNC 186 (357)
T ss_dssp T------SCEEEC--------CCCCEEECCCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred C------CEEEEeeccccceeEEEeeccCCCCCCEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEE
Confidence 3 4899999988876332222222455667889998 7999999999999999999999999998864 58999
Q ss_pred EEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 239 IKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 239 VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
|+|+|++ .++++++ .|++|+|||+++|+++..+. .|...+.+|+|++..+..|++++.|++|+|||+++++++++
T Consensus 187 v~~s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 187 VAACPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp EEECTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred EEEccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 9999743 3444433 45899999999999887765 44456789999744345666788999999999999999999
Q ss_pred cccCCCceEEEEEcCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCC
Q 011452 316 SRTEFMTPSAFIFLYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDP 391 (485)
Q Consensus 316 l~gh~~~v~avaFspdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~ 391 (485)
+.+|...|++++|+|++ ++|||++ |++|+|||++ |++++++ +|... |++|+||| ||++|||++.
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~-----V~~vafsP~d~~~l~s~s~------ 332 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDF-----VTGVAWSPLDHSKFTTVGW------ 332 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSC-----EEEEEECSSSTTEEEEEET------
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCC-----EEEEEEeCCCCCEEEEEcC------
Confidence 99999999999999987 5799999 9999999997 8888766 79887 99999999 8999999997
Q ss_pred CCcCCCCeEEEEeCCCCe
Q 011452 392 LAEGNAGSINISNILTGK 409 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk 409 (485)
||+|+|||+.+..
T Consensus 333 -----Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 333 -----DHKVLHHHLPSEG 345 (357)
T ss_dssp -----TSCEEEEECC---
T ss_pred -----CCeEEEEECCCCC
Confidence 7999999997643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=400.42 Aligned_cols=312 Identities=12% Similarity=-0.004 Sum_probs=227.3
Q ss_pred CEEEEEeCCCeEEeeecccCcEE----EEeecCCcccEEEEEEeeC------CCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 106 DIVFALAQSGVCAAFCRETNQRI----CFLNVTADEVIRSLFYNKN------NDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l----~tl~g~~~~~i~sv~~spd------g~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+++|+++.|++|+||++.++++. .++.+ |...|++|+|+|+ +++||++|. | ++++||++
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~-~~~~V~~v~wsp~~~~~~~~~~LAs~s~----D------gtvrlWd~ 242 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVH-SFGEVWDLKWHEGCHAPHLVGCLSFVSQ----E------GTINFLEI 242 (524)
T ss_dssp --------CEEEEEEEEETTTCCEEEEEEEEE-CCCSEEEEEECSSCCCSSSSCEEEEEET----T------SCEEEEEC
T ss_pred hhhccCCCCceEEEEEccCCCCCceEEEEEEe-cCCcEEEEEECCCCCCCCCCceEEEEec----C------CeEEEEEc
Confidence 35778889999999999988753 33444 6678999999997 579999884 4 59999999
Q ss_pred ccCCcCcc------cceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEE--cCCcEEEE--EEcC
Q 011452 176 RRGKPDAG------FALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSI--SDKNVQEI--KISP 243 (485)
Q Consensus 176 ~~G~~~~~------~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl--~~~~V~~V--afSp 243 (485)
..++.... .+.+.. .+...+.+|+|+ +++ .||+|+.|++|+|||+.+++ ++.++ |...|.+| +|+|
T Consensus 243 ~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s-~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~ 320 (524)
T 2j04_B 243 IDNATDVHVFKMCEKPSLTLSLADSLITTFDFL-SPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD 320 (524)
T ss_dssp CCCSSSSSEEECCCSCSEEECCTTTCEEEEEES-SSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT
T ss_pred CCCccccccceeecCceEEEEcCCCCEEEEEec-CCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC
Confidence 87753210 111111 244567789998 444 79999999999999999774 33334 56789999 5778
Q ss_pred Cc-eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc--ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC
Q 011452 244 GI-MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 244 g~-~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~--~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~ 320 (485)
++ .++++++ .|++|||||+.++++++++.+|.. .+.+|+|+ |++..+++++.|++|||||++++.++.++.+|.
T Consensus 321 ~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs-p~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~ 397 (524)
T 2j04_B 321 FEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC-PQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRE 397 (524)
T ss_dssp TSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE-TTTTEEEEECSSSEEEEEETTCTTCCEEEEECS
T ss_pred CCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccceEeC-CCcCeEEEeCCCCcEEEEECcccccceeeecCC
Confidence 65 5555554 458999999999999999988764 47899997 678888999999999999999999999999999
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
..|++|+|+|+|++|||++ |++|+|||+.++++.+++.+..++....|++++|+|||+.+.. . +.
T Consensus 398 ~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~-~-------------~~ 463 (524)
T 2j04_B 398 TTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRI-D-------------SS 463 (524)
T ss_dssp SCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEE-C-------------CC
T ss_pred CceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEc-c-------------CC
Confidence 9999999999999999999 9999999997665544433222322223789999999996633 1 23
Q ss_pred EEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC---EEEEec
Q 011452 400 INISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN---EIYTGN 475 (485)
Q Consensus 400 IklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~---~LaSgs 475 (485)
+++|+.. +|+++.+|.+|.. .|++|+|+||++ .||+|+
T Consensus 464 ~~~~~~~~~g~~~~~l~gh~~--------------------------------------~V~~Vafsp~~~~~~~lAsg~ 505 (524)
T 2j04_B 464 YEVYPLTVNDVSKAKIDAHGI--------------------------------------NITCTKWNETSAGGKCYAFSN 505 (524)
T ss_dssp CCCCC-------------CCC--------------------------------------SCCCEEECCSTTTTTEEEEEC
T ss_pred ceecccccCCcceeeecCCCc--------------------------------------eEEEEECCCCCCccHHHHhhc
Confidence 4555543 6999999999973 899999999965 999999
Q ss_pred CCCcEEEccC
Q 011452 476 RHGLVHVWSN 485 (485)
Q Consensus 476 ~DgtVklWd~ 485 (485)
.||+||||++
T Consensus 506 ~~g~vrlw~l 515 (524)
T 2j04_B 506 SAGLLTLEYL 515 (524)
T ss_dssp TTSEEEEEEC
T ss_pred cCceEEEEEc
Confidence 9999999984
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-44 Score=356.90 Aligned_cols=286 Identities=12% Similarity=0.101 Sum_probs=227.0
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEE--EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~--tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
+|..++|+ +++||+++.|++|++|+.++++.++ .+..+|...|++|+|+|+|++||++|. | ++++|
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~----D------~~v~i 87 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF----D------ATTCI 87 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET----T------SCEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC----C------CcEEE
Confidence 45555555 9999999999999999999887554 333458889999999999999999874 4 58999
Q ss_pred eEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEc--CCcEEEEEEcCCceE
Q 011452 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS--DKNVQEIKISPGIML 247 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~--~~~V~~VafSpg~~l 247 (485)
|++..++... ...+. +|...+..|+|+ |+|++|++++.|++|+|||+.++. ++..+. ...|.+|+|+|++.+
T Consensus 88 w~~~~~~~~~-~~~~~-~h~~~v~~v~~s-p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 164 (345)
T 3fm0_A 88 WKKNQDDFEC-VTTLE-GHENEVKSVAWA-PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQEL 164 (345)
T ss_dssp EEECCC-EEE-EEEEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSC
T ss_pred EEccCCCeEE-EEEcc-CCCCCceEEEEe-CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCE
Confidence 9987765311 11222 355667799998 799999999999999999998763 455664 457999999997766
Q ss_pred EEEEcCCCCeeEEEEecCCCe--EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC---------------C
Q 011452 248 LIFTKASGHVPLKILSIEDGT--VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN---------------F 310 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~--~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t---------------g 310 (485)
+++++ .|++|+|||+++++ ++.++.+|...+.+|+|+ |++..|++++.|++|+|||+.. .
T Consensus 165 l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~ 241 (345)
T 3fm0_A 165 LASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSW 241 (345)
T ss_dssp EEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEE
T ss_pred EEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEEC-CCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCcc
Confidence 66655 34899999999886 568899999999999997 7888999999999999999632 2
Q ss_pred eeEEeccc-CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc---------EEEEeecCCCCCCCCCeeEEEECCCC-
Q 011452 311 ELTEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQ- 377 (485)
Q Consensus 311 ~~~~~l~g-h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~---------ll~tl~gH~~~~~~~~v~svafSpDG- 377 (485)
+++.++.+ |...|++++|+|++.+|++++ |++|++|+.+ +. ....+.+|... |++|+|+|++
T Consensus 242 ~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~-----V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD-----VNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC-----EEEEEECSSST
T ss_pred ceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc-----EeEeEEeCCCc
Confidence 45666666 899999999999999999999 9999999985 32 12345688877 9999999998
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.+|||++. ||+|+||++.+++.+..+
T Consensus 317 ~~laS~s~-----------Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 317 GLLASCSD-----------DGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp TEEEEEET-----------TSCEEEEEECC-------
T ss_pred eEEEEcCC-----------CCcEEEEEecCCCCcccc
Confidence 59999997 799999999988866544
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-44 Score=352.77 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=221.1
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccC--cEEEEee-cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETN--QRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG--~~l~tl~-g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
|..+|.++.|+.++||+++.|++|++|++.++ +++.++. ++|...|++|+|+|+|+.||++|. | +++
T Consensus 13 h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~----D------~~v 82 (330)
T 2hes_X 13 YKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF----D------STV 82 (330)
T ss_dssp CSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET----T------SCE
T ss_pred CCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC----C------CcE
Confidence 56778888888779999999999999999875 5666673 448889999999999999999874 4 599
Q ss_pred EEeEeccCCcC--cc--cceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC----CeEEEEEcC--CcEEEEE
Q 011452 171 RIEYIRRGKPD--AG--FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KNVQEIK 240 (485)
Q Consensus 171 ~lw~i~~G~~~--~~--~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~----g~~l~tl~~--~~V~~Va 240 (485)
+||++..+... .. ...+. +|...+..|+|+ |+|++||+++.|++|+|||+.+ ++++.++.+ ..|.+|+
T Consensus 83 ~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~s-p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~ 160 (330)
T 2hes_X 83 SIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI 160 (330)
T ss_dssp EEEEC-------CCCEEEEEEC-----CEEEEEEC-TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred EEEEcccCcCccccceeEEEEc-CCCCcEEEEEEC-CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence 99998543211 00 11122 355667789998 7999999999999999999942 357777754 5799999
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCC--eEEEEeecCCcceeEEEEEecC-CCEEEEEeCCCcEEEEECCCC-------
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDG--TVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNF------- 310 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG--~~L~tl~~~~~~~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg------- 310 (485)
|+|++.++++++. |++|||||+.++ +++.++.+|.+.+..++|++.. +..|++++.|++|+|||++++
T Consensus 161 ~~p~~~~l~s~s~--D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~ 238 (330)
T 2hes_X 161 WHPSEALLASSSY--DDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQE 238 (330)
T ss_dssp ECSSSSEEEEEET--TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEE
T ss_pred ECCCCCEEEEEcC--CCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccce
Confidence 9997766666554 589999999887 7899999999999999997432 446888899999999999876
Q ss_pred -eeEEeccc-CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEE-EeecCCC-CCCCCCeeEEEECC--CCCEE
Q 011452 311 -ELTEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVT-SFEDHLL-WHPDCNTNNIYITS--DQDLI 380 (485)
Q Consensus 311 -~~~~~l~g-h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--ll~-tl~gH~~-~~~~~~v~svafSp--DG~~L 380 (485)
++...+.+ |...|++++|+|++ +|+|++ |++|+|||.. |+ ++. .+.+|.. . |+.++|+| ||++|
T Consensus 239 ~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~-----v~~v~~~~~~~~~~l 312 (330)
T 2hes_X 239 WVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYE-----INVVKWLELNGKTIL 312 (330)
T ss_dssp EEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSC-----EEEEEEC-----CCE
T ss_pred eEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccce-----EEEEEEecCCCceEE
Confidence 56667765 99999999999876 688888 9999999995 63 343 3467875 5 99999999 79999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
||++. ||+|+|||+.+
T Consensus 313 as~s~-----------Dg~v~~W~~~~ 328 (330)
T 2hes_X 313 ATGGD-----------DGIVNFWSLEK 328 (330)
T ss_dssp EEEET-----------TSEEEEEEC--
T ss_pred EEecC-----------CCcEEEEEecc
Confidence 99997 79999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-45 Score=368.17 Aligned_cols=342 Identities=11% Similarity=0.044 Sum_probs=254.5
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEecc---CCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRR---GKP 180 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~---G~~ 180 (485)
++.+++++ .|+ .+|+++.++..+|...|++|+|+| +|+.||++|. | ++++||++.. ++.
T Consensus 39 ~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~----d------g~v~vwd~~~~~~~~~ 101 (437)
T 3gre_A 39 QEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSD----Q------GVIKIWNLKEIIVGEV 101 (437)
T ss_dssp CCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEET----T------SEEEEEEHHHHHTTCC
T ss_pred cccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecC----C------ceEEEeECcccccCcc
Confidence 66666655 498 459999999556989999999999 9999999874 4 5999999976 553
Q ss_pred CcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC---CCeEEEEEcCCcEEEEEEc---------------
Q 011452 181 DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKNVQEIKIS--------------- 242 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~---~g~~l~tl~~~~V~~VafS--------------- 242 (485)
.. ..+...+...+..|+|+ |++++|++++.|++|+|||+. +++++..+..+.|..+.|+
T Consensus 102 ~~--~~~~~~h~~~v~~~~~~-~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 178 (437)
T 3gre_A 102 YS--SSLTYDCSSTVTQITMI-PNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFV 178 (437)
T ss_dssp CS--CSEEEECSSCEEEEEEC-TTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEE
T ss_pred cc--eeeeccCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEE
Confidence 21 12222345667899998 799999999999999999994 6776666554455555544
Q ss_pred -CCceEEEEEcCCCCeeEEEEecCCCeEEEEeec--CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-c
Q 011452 243 -PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-T 318 (485)
Q Consensus 243 -pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~--~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-g 318 (485)
|++.++++++ .|++|++||+++++++.++.+ |...+.+++|+ |++..|++++.|++|+|||+++++++..+. +
T Consensus 179 ~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 255 (437)
T 3gre_A 179 NEEKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSICID-EECCVLILGTTRGIIDIWDIRFNVLIRSWSFG 255 (437)
T ss_dssp CSSCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC-TTSCEEEEEETTSCEEEEETTTTEEEEEEBCT
T ss_pred cCCCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC-CCCCEEEEEcCCCeEEEEEcCCccEEEEEecC
Confidence 5555555554 358999999999999999998 78899999996 678889999999999999999999999875 7
Q ss_pred CCCceEEEE----EcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC------C---------------CCCCeeEE
Q 011452 319 EFMTPSAFI----FLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW------H---------------PDCNTNNI 371 (485)
Q Consensus 319 h~~~v~ava----Fspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~------~---------------~~~~v~sv 371 (485)
|...|.+++ |+|++++|++++ |++|+|||++ |+++.++.+|... . ....|+++
T Consensus 256 ~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l 335 (437)
T 3gre_A 256 DHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTI 335 (437)
T ss_dssp TCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCE
T ss_pred CCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEE
Confidence 888999994 556899999999 9999999996 9999999988532 1 11227889
Q ss_pred EECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc--cccCCCCCCCCccccccccccccc
Q 011452 372 YITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE--CSCSGDYSSGSCNVKKHSHASRIR 449 (485)
Q Consensus 372 afSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 449 (485)
+|+ ++++|+|++. |++|++||+.+++++.++.+|......+. +............... .....
T Consensus 336 ~~~-~~~~l~s~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 400 (437)
T 3gre_A 336 SVS-NDKILLTDEA-----------TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRT---STHSV 400 (437)
T ss_dssp EEE-TTEEEEEEGG-----------GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----------
T ss_pred EEC-CceEEEecCC-----------CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccc---ccccc
Confidence 999 8899999987 79999999999999999999853100000 0000000000000000 00000
Q ss_pred cchhcccCCeEEEEEcCC--CCEEEEecCCCcEEEcc
Q 011452 450 STVAEALEDITALFYDED--RNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 450 ~~~~~~l~~V~sl~fspD--g~~LaSgs~DgtVklWd 484 (485)
.....+...|++|+|+|+ +..|+||+.||+|+||+
T Consensus 401 ~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 401 DDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred CcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 111223468999999999 88999999999999996
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=358.55 Aligned_cols=279 Identities=12% Similarity=0.123 Sum_probs=237.5
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCC-----------------cccEEEEEEeeCCCEEEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTA-----------------DEVIRSLFYNKNNDSLIT 153 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~-----------------~~~i~sv~~spdg~~Las 153 (485)
.|.+.|.+|.|+ |++||+++ ++++++|+..+|+++.++.... +..|++|+|+|||+.||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 356666777776 99999987 7899999999999999886521 124999999999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~- 232 (485)
++. | ++++|||+.++++. ..+. +|...+..++|+ |+|++|++++.|++|+|||+.++++..++.
T Consensus 141 ~~~----d------~~i~iwd~~~~~~~---~~~~-~h~~~v~~~~~~-p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~ 205 (393)
T 1erj_A 141 GAE----D------RLIRIWDIENRKIV---MILQ-GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI 205 (393)
T ss_dssp EET----T------SCEEEEETTTTEEE---EEEC-CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EcC----C------CeEEEEECCCCcEE---EEEc-cCCCCEEEEEEc-CCCCEEEEecCCCcEEEEECCCCeeEEEEEc
Confidence 774 4 59999999888762 2233 355667789998 799999999999999999999999988875
Q ss_pred CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEe-------ecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 233 DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSF-------NHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 233 ~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl-------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
...|..++|+| ++.++++++ .|++|+|||+++|+++..+ .+|.+.+.+|+|+ |++..|++++.|++|+|
T Consensus 206 ~~~v~~~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~ 282 (393)
T 1erj_A 206 EDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKL 282 (393)
T ss_dssp SSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEE
Confidence 46899999998 776666655 4589999999999999888 5788899999997 77889999999999999
Q ss_pred EECCC------------CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeE
Q 011452 305 LDVRN------------FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (485)
Q Consensus 305 WDv~t------------g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~s 370 (485)
||+++ +.+..++.+|...|.+++|+|++++|+|++ |++|++||.+ |+++.+|.+|... |.+
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~-----v~~ 357 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----VIS 357 (393)
T ss_dssp EEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----EEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCC-----EEE
Confidence 99986 456677889999999999999999999999 9999999996 9999999999987 999
Q ss_pred EEECC------CCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 371 IYITS------DQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 371 vafSp------DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
++|+| ++++||||+. ||+|||||+.
T Consensus 358 v~~~~~~~~~p~~~~l~sgs~-----------Dg~i~iW~~~ 388 (393)
T 1erj_A 358 VAVANGSSLGPEYNVFATGSG-----------DCKARIWKYK 388 (393)
T ss_dssp EEECSSCTTCTTCEEEEEEET-----------TSEEEEEEEE
T ss_pred EEecCCcCcCCCCCEEEEECC-----------CCcEEECccc
Confidence 99986 7999999997 7999999975
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=354.21 Aligned_cols=303 Identities=13% Similarity=0.170 Sum_probs=260.1
Q ss_pred eEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc
Q 011452 98 IIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 98 V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
|..+.+.+++||+++.||++++||..+|+++.++.+ |...|+++.|+ ++.|++++. | +++++|++.+
T Consensus 122 ~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~--~~~l~s~~~----d------g~i~vwd~~~ 188 (445)
T 2ovr_B 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMR--DNIIISGST----D------RTLKVWNAET 188 (445)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEE--TTEEEEEET----T------SCEEEEETTT
T ss_pred EEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcC-CCCCEEEEEec--CCEEEEEeC----C------CeEEEEECCc
Confidence 345566699999999999999999999999999987 88899999998 578998774 4 5999999988
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCC
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~ 255 (485)
|++.. .+. .+...+..++|+ ++.|++++.|++|++||+.+++++.++. ...|.+++| .+..++++ + .
T Consensus 189 ~~~~~---~~~-~h~~~v~~~~~~---~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~-~--~ 257 (445)
T 2ovr_B 189 GECIH---TLY-GHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY-DGRRVVSG-A--Y 257 (445)
T ss_dssp TEEEE---EEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE-CSSCEEEE-E--T
T ss_pred CcEEE---EEC-CCCCcEEEEEec---CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE-CCCEEEEE-c--C
Confidence 87622 222 244456678885 5679999999999999999999998885 458999999 45555554 3 3
Q ss_pred CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF 335 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll 335 (485)
|++|++||+++++++.++.+|...+.+++| ++..+++++.|++|++||+++++++..+.+|...+.++.+ ++++|
T Consensus 258 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l 332 (445)
T 2ovr_B 258 DFMVKVWDPETETCLHTLQGHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNIL 332 (445)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEE
T ss_pred CCEEEEEECCCCcEeEEecCCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEE
Confidence 589999999999999999999999999998 5788999999999999999999999999999999988866 56799
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeec---CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFED---HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~g---H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
++++ |++|++||++ |+++.++.+ |... |.+++|+ +++|++++. ||+|+|||+.+|++
T Consensus 333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~--~~~l~s~~~-----------dg~v~iwd~~~~~~ 394 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA-----VTCLQFN--KNFVITSSD-----------DGTVKLWDLKTGEF 394 (445)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECSTTSCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcEEEEEccCCCCCCC-----EEEEEEC--CCEEEEEeC-----------CCeEEEEECCCCce
Confidence 9999 9999999995 999999998 5544 8999995 689999997 79999999999999
Q ss_pred EEEec-----CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc----EE
Q 011452 411 LAKIR-----ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL----VH 481 (485)
Q Consensus 411 l~tl~-----gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt----Vk 481 (485)
+.++. +|. ..|++++|+|+|..||+|+.||+ |.
T Consensus 395 ~~~~~~~~~~~~~--------------------------------------~~v~~~~~s~~~~~la~~~~dg~~~~~l~ 436 (445)
T 2ovr_B 395 IRNLVTLESGGSG--------------------------------------GVVWRIRASNTKLVCAVGSRNGTEETKLL 436 (445)
T ss_dssp EEEEEECTTGGGT--------------------------------------CEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred eeeeeccccCCCC--------------------------------------ceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence 99994 332 28999999999999999999998 99
Q ss_pred EccC
Q 011452 482 VWSN 485 (485)
Q Consensus 482 lWd~ 485 (485)
|||.
T Consensus 437 v~df 440 (445)
T 2ovr_B 437 VLDF 440 (445)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=351.17 Aligned_cols=267 Identities=12% Similarity=0.064 Sum_probs=219.0
Q ss_pred cCEEEEEeCCCeEEeeeccc-------CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc
Q 011452 105 RDIVFALAQSGVCAAFCRET-------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~t-------G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
+++||+++.|++|++|++.+ |+++.++.+ |...|.+|+|+|++..|+++|. | ++++|||+++
T Consensus 39 ~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~-h~~~V~~~~~~~~~~~l~s~s~----D------~~v~lwd~~~ 107 (343)
T 2xzm_R 39 SPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG-HNHFVSDLALSQENCFAISSSW----D------KTLRLWDLRT 107 (343)
T ss_dssp CCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECC-CSSCEEEEEECSSTTEEEEEET----T------SEEEEEETTS
T ss_pred CCEEEEEcCCCEEEEEECCcCCcccccccccchhcc-CCCceEEEEECCCCCEEEEEcC----C------CcEEEEECCC
Confidence 78999999999999999864 456777877 8889999999999999999774 4 5999999999
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-----cCCcEEEEEEcCCc-------
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDKNVQEIKISPGI------- 245 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-----~~~~V~~VafSpg~------- 245 (485)
|++.. .|. +|...+..|+|+ |+|++|++++.|++|+|||+.. .+...+ +...|.+++|+|++
T Consensus 108 ~~~~~---~~~-~h~~~v~~v~~s-p~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 181 (343)
T 2xzm_R 108 GTTYK---RFV-GHQSEVYSVAFS-PDNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ 181 (343)
T ss_dssp SCEEE---EEE-CCCSCEEEEEEC-SSTTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEECCCCCSCSCCC
T ss_pred CcEEE---EEc-CCCCcEEEEEEC-CCCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeeeccccccccccC
Confidence 88622 233 355667799998 7999999999999999999974 444443 23579999999865
Q ss_pred ---eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCC
Q 011452 246 ---MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFM 321 (485)
Q Consensus 246 ---~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~ 321 (485)
.++++++ .|++|+||| .+++++.++.+|...+..++|+ |++.+|++++.|++|+|||+.+ ..+...+ .|..
T Consensus 182 ~~~~~l~s~~--~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~-~~~~ 256 (343)
T 2xzm_R 182 PFAPYFASVG--WDGRLKVWN-TNFQIRYTFKAHESNVNHLSIS-PNGKYIATGGKDKKLLIWDILNLTYPQREF-DAGS 256 (343)
T ss_dssp SSCCEEEEEE--TTSEEEEEE-TTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTCEEEEEESSCCSSCSEEE-ECSS
T ss_pred CCCCEEEEEc--CCCEEEEEc-CCCceeEEEcCccccceEEEEC-CCCCEEEEEcCCCeEEEEECCCCcccceee-cCCC
Confidence 3444433 458999999 5788999999999999999997 7888999999999999999954 4444444 3455
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEE--Eee-----------cCCCCCCCCCeeEEEECCCCCEEEEEecCC
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVT--SFE-----------DHLLWHPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~--tl~-----------gH~~~~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.|.+++|+|++++|++++|++|+|||+. ++.+. +++ +|... |++++|+|||++||+|+.
T Consensus 257 ~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~sp~g~~l~sg~~-- 329 (343)
T 2xzm_R 257 TINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQ-----CTSLAWNALGKKLFAGFT-- 329 (343)
T ss_dssp CEEEEEECSSSCEEEEEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCC-----EEEEEECSSSCCEEEEET--
T ss_pred cEEEEEECCCCCEEEEECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCc-----eEEEEECCCCCeEEEecC--
Confidence 7999999999999887779999999995 65433 565 66655 899999999999999997
Q ss_pred CCCCCCcCCCCeEEEEeCCCCe
Q 011452 388 SDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk 409 (485)
||+|+|||+.||+
T Consensus 330 ---------Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 330 ---------DGVIRTFSFETSA 342 (343)
T ss_dssp ---------TSEEEEEEEEEEE
T ss_pred ---------CceEEEEEEEccC
Confidence 7999999988764
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-44 Score=353.12 Aligned_cols=294 Identities=13% Similarity=0.087 Sum_probs=238.3
Q ss_pred cccCcEEEEeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEE
Q 011452 122 RETNQRICFLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVE 199 (485)
Q Consensus 122 ~~tG~~l~tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~ 199 (485)
..+.+.+.++.+ |...|++++|+|+| +.||+++. | ++++||++..++... .+.. ++...+..++
T Consensus 60 ~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~~----d------g~i~iwd~~~~~~~~---~~~~~~h~~~v~~~~ 125 (383)
T 3ei3_B 60 LKSYKLHRTASP-FDRRVTSLEWHPTHPTTVAVGSK----G------GDIILWDYDVQNKTS---FIQGMGPGDAITGMK 125 (383)
T ss_dssp HTTCEEEEEECC-CSSCEEEEEECSSCTTEEEEEEB----T------SCEEEEETTSTTCEE---EECCCSTTCBEEEEE
T ss_pred ccccceEEeccC-CCCCEEEEEECCCCCCEEEEEcC----C------CeEEEEeCCCcccce---eeecCCcCCceeEEE
Confidence 344566667776 88899999999999 99999874 3 589999998887632 3321 3456677899
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
|++.++++|++++.|++|+|||+.+ ..+..+.. ..|.+++|+|++.++++++ .|++|++||+ +++++.++.
T Consensus 126 ~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~i~d~-~~~~~~~~~ 201 (383)
T 3ei3_B 126 FNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGD--STGRLLLLGL-DGHEIFKEK 201 (383)
T ss_dssp EETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEE--TTSEEEEEET-TSCEEEEEE
T ss_pred eCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEEC--CCCCEEEEEC-CCCEEEEec
Confidence 9833889999999999999999986 55555532 4699999999766666654 4489999999 789999999
Q ss_pred cCCcceeEEEEEecCCC-EEEEEeCCCcEEEEECCC----CeeEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEe
Q 011452 275 HLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN----FELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~-~lls~s~D~tIkIWDv~t----g~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd 347 (485)
+|...+..|+|+ |++. .+++++.|++|+|||+++ ++++..+ +|...|.+++|+| +|++|++++ |++|+|||
T Consensus 202 ~h~~~v~~~~~~-~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd 279 (383)
T 3ei3_B 202 LHKAKVTHAEFN-PRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYS 279 (383)
T ss_dssp CSSSCEEEEEEC-SSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEE
T ss_pred cCCCcEEEEEEC-CCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEE
Confidence 999999999997 5666 788889999999999998 7788777 7999999999999 999999999 99999999
Q ss_pred CC-CcEEEEeecCCCC------------CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 348 FR-GELVTSFEDHLLW------------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~------------~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
++ ++++.++.+|... +|+..+..++|+|||++ ++ +.|++|+|||+.+|+++.++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~-----------s~d~~i~iwd~~~~~~~~~l 346 (383)
T 3ei3_B 280 SYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LL-----------NDKRTIDIYDANSGGLVHQL 346 (383)
T ss_dssp TTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CT-----------TCCCCEEEEETTTCCEEEEE
T ss_pred CCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--cc-----------CCCCeEEEEecCCCceeeee
Confidence 96 9988888887532 22233444555555555 33 45899999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+|.. . ..|..++|+|||+.||+|+ |++|+|||.
T Consensus 347 ~~~~~--------------------------~----------~~~~~~~~s~~g~~l~s~s-d~~i~iw~~ 380 (383)
T 3ei3_B 347 RDPNA--------------------------A----------GIISLNKFSPTGDVLASGM-GFNILIWNR 380 (383)
T ss_dssp CBTTB--------------------------C----------SCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred cCCCC--------------------------C----------ceEEEEEEecCccEEEEec-CCcEEEEec
Confidence 98652 0 2677789999999999998 999999984
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=336.62 Aligned_cols=292 Identities=13% Similarity=0.117 Sum_probs=243.8
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCC
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN 148 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg 148 (485)
++.++..+..|..++.++.|.|. +++||+++.||++++|+..+|+.+.++.+ |...|.+++|+|+|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~-------------~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 77 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPN-------------GEWLASSSADKLIKIWGAYDGKFEKTISG-HKLGISDVAWSSDS 77 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-------------SSEEEEEETTSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTS
T ss_pred CceeEEEEcccCCcEEEEEECCC-------------CCEEEEeeCCCeEEEEeCCCcccchhhcc-CCCceEEEEEcCCC
Confidence 34455555555555555555554 89999999999999999999999999887 88899999999999
Q ss_pred CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE
Q 011452 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 228 (485)
Q Consensus 149 ~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l 228 (485)
+.|++++. | ++++||++.++++.. .+. .+...+..++|+ |+|++|++++.|++|+|||+.+++++
T Consensus 78 ~~l~s~~~----d------~~i~vwd~~~~~~~~---~~~-~~~~~v~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~ 142 (312)
T 4ery_A 78 NLLVSASD----D------KTLKIWDVSSGKCLK---TLK-GHSNYVFCCNFN-PQSNLIVSGSFDESVRIWDVKTGKCL 142 (312)
T ss_dssp SEEEEEET----T------SEEEEEETTTCCEEE---EEE-CCSSCEEEEEEC-SSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred CEEEEECC----C------CEEEEEECCCCcEEE---EEc-CCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEECCCCEEE
Confidence 99999774 4 599999999888622 233 244567789998 79999999999999999999999999
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEE
Q 011452 229 YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305 (485)
Q Consensus 229 ~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW 305 (485)
.++.. ..|.+++|+|++.++++++ .|++|++||+.+++++.++. .+...+..++|+ |++..|++++.|++|+||
T Consensus 143 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iw 219 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDGSLIVSSS--YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS-PNGKYILAATLDNTLKLW 219 (312)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEEECCSSCCCEEEEEEC-TTSSEEEEEETTTEEEEE
T ss_pred EEecCCCCcEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCceeeEEeccCCCceEEEEEC-CCCCEEEEEcCCCeEEEE
Confidence 88864 5899999999776666654 35899999999999998875 445567889996 778899999999999999
Q ss_pred ECCCCeeEEecccCCCceE---EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 306 DVRNFELTEVSRTEFMTPS---AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 306 Dv~tg~~~~~l~gh~~~v~---avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
|+++++++..+.+|...+. .....+++++|++++ |++|++||++ ++++.++.+|... |.+++|+|++++|
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~l 294 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDV-----VISTACHPTENII 294 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECSSSSEE
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCc-----EEEEeecCcCCce
Confidence 9999999999988876533 233457899999999 9999999996 9999999999987 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
++++. +.|++|+||+..
T Consensus 295 ~s~~~---------~~d~~i~~W~~d 311 (312)
T 4ery_A 295 ASAAL---------ENDKTIKLWKSD 311 (312)
T ss_dssp EEEEC---------TTTCCEEEEECC
T ss_pred EEEEc---------cCCccEEEecCC
Confidence 99984 248999999853
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=338.54 Aligned_cols=293 Identities=9% Similarity=0.076 Sum_probs=233.2
Q ss_pred hccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCc-----EEEEeecCCcccEEEEE
Q 011452 69 NIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ-----RICFLNVTADEVIRSLF 143 (485)
Q Consensus 69 ~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~-----~l~tl~g~~~~~i~sv~ 143 (485)
.+.|+.+++.|..++.+..|.|. .+++|||+|.||+|++||+.+++ +++++.+ |...|.+++
T Consensus 27 ~~~l~~tL~GH~~~V~~v~~sp~------------~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~-h~~~V~~~~ 93 (340)
T 4aow_A 27 QMTLRGTLKGHNGWVTQIATTPQ------------FPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG-HSHFVSDVV 93 (340)
T ss_dssp EEEEEEEECCCSSCEEEEEECTT------------CTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECC-CSSCEEEEE
T ss_pred ceEEEEEECCccCCEEEEEEeCC------------CCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeC-CCCCEEEEE
Confidence 44555566666665555555553 15799999999999999987654 5677777 888999999
Q ss_pred EeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC
Q 011452 144 YNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 223 (485)
Q Consensus 144 ~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~ 223 (485)
|+|||+.|++++. | +.+++|+...+.... .+. .....+..+.|+ +++++|++++.|+.+++||+.
T Consensus 94 ~s~dg~~l~s~~~----d------~~i~~~~~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 94 ISSDGQFALSGSW----D------GTLRLWDLTTGTTTR---RFV-GHTKDVLSVAFS-SDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp ECTTSSEEEEEET----T------SEEEEEETTTTEEEE---EEE-CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTT
T ss_pred ECCCCCEEEEEcc----c------ccceEEeecccceee---eec-CCCCceeEEEEe-ecCccceeecCCCeEEEEEeC
Confidence 9999999999774 3 489999986665411 111 222334456776 799999999999999999998
Q ss_pred CCeEEEE-Ec--CCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC
Q 011452 224 NYTMLYS-IS--DKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE 298 (485)
Q Consensus 224 ~g~~l~t-l~--~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~ 298 (485)
....... +. ...|..++|+++ ..++++++ .|++|++||+++++++.++.+|...+.+|+|+ |++..|++++.
T Consensus 159 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s-~~~~~l~s~s~ 235 (340)
T 4aow_A 159 GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVS-PDGSLCASGGK 235 (340)
T ss_dssp SCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEET
T ss_pred CCceEEEEeccccCcccceEEccCCCCcEEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEEC-CCCCEEEEEeC
Confidence 7664433 22 468999999963 34444443 45899999999999999999999999999997 77889999999
Q ss_pred CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEee---------cCCCCCCCCCe
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE---------DHLLWHPDCNT 368 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~---------gH~~~~~~~~v 368 (485)
|++|+|||+++++++..+.+| ..|.+++|+|++.+++++.|++|+|||++ +.++.++. +|... |
T Consensus 236 Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v 309 (340)
T 4aow_A 236 DGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQ-----C 309 (340)
T ss_dssp TCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCC-----E
T ss_pred CCeEEEEEeccCceeeeecCC-ceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCC-----E
Confidence 999999999999999998766 48999999999988776669999999997 77777665 45544 9
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
++|+|+|||++||||+. ||+|+|||+.||+
T Consensus 310 ~~l~~s~dg~~l~sgs~-----------Dg~v~iW~~~tGt 339 (340)
T 4aow_A 310 TSLAWSADGQTLFAGYT-----------DNLVRVWQVTIGT 339 (340)
T ss_dssp EEEEECTTSSEEEEEET-----------TSCEEEEEEEC--
T ss_pred EEEEECCCCCEEEEEeC-----------CCEEEEEeCCCcC
Confidence 99999999999999997 7999999999985
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=335.55 Aligned_cols=296 Identities=14% Similarity=0.149 Sum_probs=244.8
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL 208 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L 208 (485)
.+|.+ |...|.+++|+|+|+.||+++. | ++++||++.+|++.. .+. .+...+..++|+ |+|++|
T Consensus 26 ~~l~~-h~~~v~~~~~s~~~~~l~~~~~----d------g~i~vwd~~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~l 89 (369)
T 3zwl_B 26 IKLTG-HERPLTQVKYNKEGDLLFSCSK----D------SSASVWYSLNGERLG---TLD-GHTGTIWSIDVD-CFTKYC 89 (369)
T ss_dssp EEEEC-CSSCEEEEEECTTSCEEEEEES----S------SCEEEEETTTCCEEE---EEC-CCSSCEEEEEEC-TTSSEE
T ss_pred EEEEE-eeceEEEEEEcCCCCEEEEEeC----C------CEEEEEeCCCchhhh---hhh-hcCCcEEEEEEc-CCCCEE
Confidence 34666 8889999999999999999774 3 489999998888622 233 245567789998 799999
Q ss_pred EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCC---CCeeEEEEecCCCe-----------EEEEe
Q 011452 209 TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGT-----------VLKSF 273 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~---~D~tIklWdi~tG~-----------~L~tl 273 (485)
++++.|++|+|||+.+++++.++. ...|.+++|+|++.+++++..+ .++.|++||+.+++ .+..+
T Consensus 90 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~ 169 (369)
T 3zwl_B 90 VTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKI 169 (369)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE
T ss_pred EEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeec
Confidence 999999999999999999988885 5689999999866666654432 12799999998774 44556
Q ss_pred ecCCc--ceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC
Q 011452 274 NHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 274 ~~~~~--~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~ 349 (485)
..|.+ .+..++|+ |++..|++++.|++|++||+++ ++++..+.+|...|.+++|+|++++|++++ |++|++||++
T Consensus 170 ~~~~~~~~~~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 170 ITHEGLDAATVAGWS-TKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp ECCTTCCCEEEEEEC-GGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cCCcCccceeEEEEc-CCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 66655 78899997 6788899999999999999999 899999999999999999999999999999 9999999996
Q ss_pred -CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC---CCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 350 -GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD---PLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 350 -G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d---~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
++++..+. |... +..++|+|+|++|++++.+.... .........|++||+.+++++.++.+|..
T Consensus 249 ~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~------ 316 (369)
T 3zwl_B 249 TLQVLKKYE-TDCP-----LNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFG------ 316 (369)
T ss_dssp TCCEEEEEE-CSSC-----EEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSS------
T ss_pred CCceeeeec-CCCC-----ceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccC------
Confidence 99999998 4444 89999999999999998621000 00000011899999999999999999973
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++++|+|||+.|+||+.||+|+||+.
T Consensus 317 --------------------------------~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 344 (369)
T 3zwl_B 317 --------------------------------PLNTVAISPQGTSYASGGEDGFIRLHHF 344 (369)
T ss_dssp --------------------------------CEEEEEECTTSSEEEEEETTSEEEEEEE
T ss_pred --------------------------------cEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence 8999999999999999999999999983
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=351.68 Aligned_cols=310 Identities=14% Similarity=0.154 Sum_probs=255.0
Q ss_pred cccc-eEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 94 KRSK-IIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 94 ~~s~-V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
|..+ |..+.+.+++||+++.||+|++||..+|+++.++.+ |...|++++|+|++ .|++++. | +++++
T Consensus 120 h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~-~l~s~s~----d------g~i~v 187 (464)
T 3v7d_B 120 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGST----D------RTVRV 187 (464)
T ss_dssp CSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSTT-EEEEEET----T------SCEEE
T ss_pred CCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCC-EEEEEeC----C------CCEEE
Confidence 4555 456667799999999999999999999999999987 88899999999999 8888774 4 59999
Q ss_pred eEeccCCcCcccceeeeccccCceEEEEeC-CCCeEEEEeeCCCcEEEeecCCCeE-----------------------E
Q 011452 173 EYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTM-----------------------L 228 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~Las~s~D~tiKlWdl~~g~~-----------------------l 228 (485)
|++.+|+.. ..|. .+...+..++|++ +++++|++++.|++|++||+.+++. +
T Consensus 188 wd~~~~~~~---~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (464)
T 3v7d_B 188 WDIKKGCCT---HVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 263 (464)
T ss_dssp EETTTTEEE---EEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred EECCCCcEE---EEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence 999888762 2333 2455667888874 6889999999999999999988763 3
Q ss_pred EEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 229 YSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 229 ~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
..+.+ ..|.++ +|++.++++++ .|++|++||+.+++++.++.+|...+.+++|+ |++..+++++.|++|+|||
T Consensus 264 ~~~~~~~~~v~~~--~~~~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 264 GVLRGHMASVRTV--SGHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWD 338 (464)
T ss_dssp EEECCCSSCEEEE--EEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEE
T ss_pred EEccCccceEEEE--cCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEc-CCCCEEEEEeCCCcEEEEE
Confidence 44444 356665 55344444443 35899999999999999999999999999997 6788999999999999999
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
+++++++.++.+|...|.+++|+ +++|++++ |++|++||++ ++....+. |... +..++|+|+|++|++++
T Consensus 339 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~l~~~~ 410 (464)
T 3v7d_B 339 LENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNL-----SAITTFYVSDNILVSGS 410 (464)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTC-----CCEEEEEECSSEEEEEE
T ss_pred CCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCC-----ccEEEEEeCCCEEEEec
Confidence 99999999999999999999997 58899999 9999999996 77766653 3333 77899999999999987
Q ss_pred cCCCCCCCCcCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 385 KADSDDPLAEGNAGSINISNILTGKCLAK-IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl~TGk~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
||+|+|||+.+|+++.+ +.+|. ..|++|+
T Consensus 411 ------------dg~i~iwd~~~g~~~~~~~~~~~--------------------------------------~~v~~v~ 440 (464)
T 3v7d_B 411 ------------ENQFNIYNLRSGKLVHANILKDA--------------------------------------DQIWSVN 440 (464)
T ss_dssp ------------TTEEEEEETTTCCEEESCTTTTC--------------------------------------SEEEEEE
T ss_pred ------------CCeEEEEECCCCcEEehhhccCC--------------------------------------CcEEEEE
Confidence 59999999999999986 55554 2899999
Q ss_pred EcCCCCEEEEecCCCcEEEc
Q 011452 464 YDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklW 483 (485)
|+ ++..+++++.|+.+.+|
T Consensus 441 ~~-~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 441 FK-GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EE-TTEEEEEEEETTEEEEE
T ss_pred ec-CCEEEEEEEeCCeEEEE
Confidence 98 45666777788876655
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=352.33 Aligned_cols=315 Identities=13% Similarity=0.101 Sum_probs=252.8
Q ss_pred eEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 98 IIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 98 V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
+..|+|+ +++||+++.||++++|+..+++...++.. + ..+...+|+|+|+.||+++. | ++++||++
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~l~~~~~----d------g~i~iwd~ 126 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKR-A-DYTAVDTAKLQMRRFILGTT----E------GDIKVLDS 126 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCS-C-CEEEEEEECSSSCEEEEEET----T------SCEEEECT
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEec-C-CceEEEEEecCCCEEEEEEC----C------CCEEEEeC
Confidence 3345566 99999999999999999998888877765 4 56777789999999999774 3 58999999
Q ss_pred ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcC
Q 011452 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~ 253 (485)
..+++. ..+. .+...+..++|+ |+|++|++++.|++|+|||+.+++++.++. ...|.+++|+|++.++++++
T Consensus 127 ~~~~~~---~~~~-~h~~~v~~~~~~-~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~- 200 (420)
T 3vl1_A 127 NFNLQR---EIDQ-AHVSEITKLKFF-PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS- 200 (420)
T ss_dssp TSCEEE---EETT-SSSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEE-
T ss_pred CCccee---eecc-cccCccEEEEEC-CCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEc-
Confidence 877652 1222 355667789998 799999999999999999999999888875 46899999999766666654
Q ss_pred CCCeeEEEEecCCCeEEEEeec---CCcceeEEEEEe--------------------cCCCEEEEEeCCCcEEEEECCCC
Q 011452 254 SGHVPLKILSIEDGTVLKSFNH---LLHRNKKVDFIE--------------------QFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~---~~~~~~~V~f~~--------------------~~~~~lls~s~D~tIkIWDv~tg 310 (485)
.|++|+|||+++|+++.++.. |...+..++|.+ |++..|++++.|++|+|||++++
T Consensus 201 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 201 -LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp -TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred -CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 358999999999999999985 344455666542 56678888899999999999999
Q ss_pred eeEEec-ccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-Cc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 311 ELTEVS-RTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 311 ~~~~~l-~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+.+..+ .+|...|.+++|+|+++ +|++++ |++|++||++ ++ ++.++.+|... .|..++ +|+|++|++++.
T Consensus 280 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~----~v~~~~-~~~~~~l~s~~~ 354 (420)
T 3vl1_A 280 EQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGT----PINNVY-FAAGALFVSSGF 354 (420)
T ss_dssp CEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTS----CEEEEE-EETTEEEEEETT
T ss_pred ceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCC----CceEEE-eCCCCEEEEecC
Confidence 876665 56889999999999999 999999 9999999996 64 58888885432 277775 568899999986
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCeEE---------EEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhccc
Q 011452 386 ADSDDPLAEGNAGSINISNILTGKCL---------AKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk~l---------~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
|++|+|||+.+++.. ..+.+|.
T Consensus 355 -----------d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 385 (420)
T 3vl1_A 355 -----------DTSIKLDIISDPESERPAIEFETPTFLVSND-------------------------------------- 385 (420)
T ss_dssp -----------TEEEEEEEECCTTCCSCEECTTSCEEECCSS--------------------------------------
T ss_pred -----------CccEEEEeccCCCCCccceeccCccEEccCC--------------------------------------
Confidence 799999998864221 1222332
Q ss_pred CCeEEEEEcCCCC---EEEEecCCCcEEEccC
Q 011452 457 EDITALFYDEDRN---EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 457 ~~V~sl~fspDg~---~LaSgs~DgtVklWd~ 485 (485)
..|.+++|+||++ .|++.+.+|.+++|++
T Consensus 386 ~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~ 417 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGEVLEVGKNNFCALYNL 417 (420)
T ss_dssp CCCCEEEEECCSSSSCEEEEEETTTEEEEEES
T ss_pred cceEEEEEccCCCCcceEEEEcCCceEEEEec
Confidence 3899999999999 7777778999999984
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=374.71 Aligned_cols=302 Identities=12% Similarity=0.171 Sum_probs=238.9
Q ss_pred EeecCCcccEEEEEEeeCC-CEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc--ceeeeccccCceEEEEeCCCCe
Q 011452 130 FLNVTADEVIRSLFYNKNN-DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF--ALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg-~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~--~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
.|.+ |.+.|++|+|+|++ +.|+|+|. | ++++||++..++...+. ..+. +|...+..|+|+ |+|+
T Consensus 377 ~l~~-H~~~V~~v~~~~~~~~~l~s~s~----D------~~i~~W~~~~~~~~~~~~~~~~~-~h~~~v~~v~~s-~~g~ 443 (694)
T 3dm0_A 377 TMRA-HTDMVTAIATPIDNADIIVSASR----D------KSIILWKLTKDDKAYGVAQRRLT-GHSHFVEDVVLS-SDGQ 443 (694)
T ss_dssp EEEC-CSSCEEEEECCTTCCSEEEEEET----T------SEEEEEECCCSTTCSCEEEEEEE-CCSSCEEEEEEC-TTSS
T ss_pred hccc-CCceeEEEEecCCCCCEEEEEeC----C------CcEEEEEccCCCcccccccceec-CCCCcEEEEEEC-CCCC
Confidence 5666 89999999999975 78999774 4 59999998665432111 1122 355667789998 7999
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe----ecCCcce
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF----NHLLHRN 280 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl----~~~~~~~ 280 (485)
+|++|+.|++|||||+.+++++.++.+ ..|.+|+|||++.++++++ .|++|+|||+..+ +..++ .+|...+
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s--~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v 520 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSAS--RDRTIKLWNTLGE-CKYTISEGGEGHRDWV 520 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEE--TTSCEEEECTTSC-EEEEECSSTTSCSSCE
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEe--CCCEEEEEECCCC-cceeeccCCCCCCCcE
Confidence 999999999999999999999888854 5899999999776666655 4589999998654 44444 3677789
Q ss_pred eEEEEEecCC--CEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 281 KKVDFIEQFN--EKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 281 ~~V~f~~~~~--~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
..++|++ ++ ..+++++.|++|+|||++++++..++.+|...|++++|+|+|++|+|++ |++|+|||++ |+++.++
T Consensus 521 ~~~~~~~-~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~ 599 (694)
T 3dm0_A 521 SCVRFSP-NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL 599 (694)
T ss_dssp EEEEECS-CSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC
T ss_pred EEEEEeC-CCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe
Confidence 9999974 43 4688889999999999999999999999999999999999999999999 9999999996 9999988
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
..|. . |.+++|+||+.+|++++ |+.|+|||+.+++++.++..|... ++...+.
T Consensus 600 ~~~~-~-----v~~~~~sp~~~~l~~~~------------~~~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~----- 652 (694)
T 3dm0_A 600 EANS-V-----IHALCFSPNRYWLCAAT------------EHGIKIWDLESKSIVEDLKVDLKA----EAEKADN----- 652 (694)
T ss_dssp BCSS-C-----EEEEEECSSSSEEEEEE------------TTEEEEEETTTTEEEEEECCCCC-----------------
T ss_pred cCCC-c-----EEEEEEcCCCcEEEEEc------------CCCEEEEECCCCCChhhhcccccc----ccccccc-----
Confidence 7653 3 89999999999999876 478999999999999999876420 0000000
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..+ .......-.|++|+|||||+.|+|||.||+|+||++
T Consensus 653 ---~~~-------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 653 ---SGP-------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp ------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred ---ccc-------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEec
Confidence 000 000001125899999999999999999999999985
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=409.75 Aligned_cols=321 Identities=14% Similarity=0.205 Sum_probs=276.0
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.+...|..+.|+ +.++++++.||++++|+..+++++.++.+ |...|.+++|+|+|+.|+++|.+ +++
T Consensus 838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-h~~~v~~v~~spdg~~l~s~s~d----------g~v 906 (1249)
T 3sfz_A 838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-HLSWVHGVMFSPDGSSFLTASDD----------QTI 906 (1249)
T ss_dssp SSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETT----------SCE
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC-CccceEEEEECCCCCEEEEEeCC----------CeE
Confidence 356788888888 99999999999999999999999999887 88899999999999999998743 366
Q ss_pred EEeEeccC-----------------------------------------------------------Cc------Ccccc
Q 011452 171 RIEYIRRG-----------------------------------------------------------KP------DAGFA 185 (485)
Q Consensus 171 ~lw~i~~G-----------------------------------------------------------~~------~~~~~ 185 (485)
++|++..+ +. +....
T Consensus 907 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~ 986 (1249)
T 3sfz_A 907 RVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIK 986 (1249)
T ss_dssp EEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCE
T ss_pred EEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEE
Confidence 66664221 00 00001
Q ss_pred eee--------e--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-cCCcEEEEEEcCCceEEEEEcCC
Q 011452 186 LFE--------S--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 186 lf~--------~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~ll~sss~~ 254 (485)
+|. . .+...+..++|+ |+|++|++++.|++|++||+.+++++... +...|.+++|+|++.+++++
T Consensus 987 i~d~~~~~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~--- 1062 (1249)
T 3sfz_A 987 IIELPNNRVFSSGVGHKKAVRHIQFT-ADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWS--- 1062 (1249)
T ss_dssp EEETTTTSCEEECCCCSSCCCCEEEC-SSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEE---
T ss_pred EEEcCCCceeeecccCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEE---
Confidence 111 0 234456689998 79999999999999999999999977544 35689999999999888764
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
.|++|++||+.+|+++.++.+|...+..++|+ |++..+++++.|++|+|||+.+++++.++.+|...|.+++|+|||++
T Consensus 1063 ~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A 1063 FDGTVKVWNVITGRIERDFTCHQGTVLSCAIS-SDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDGIL 1141 (1249)
T ss_dssp SSSEEEEEETTTTCCCEEEECCSSCCCCEEEC-SSSSSCEEECCSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSSSE
T ss_pred CCCcEEEEECCCCceeEEEcccCCcEEEEEEC-CCCCEEEEEcCCCcEEEEECCCcceeeeeccCCCcEEEEEECCCCCE
Confidence 34899999999999999999999999999997 78889999999999999999999999999999999999999999999
Q ss_pred EEEEe-CCcEEEEeCC-CcEEEEe---------ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE
Q 011452 335 FLTFR-NRTVAVWNFR-GELVTSF---------EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS 403 (485)
Q Consensus 335 laS~s-D~TIklWd~~-G~ll~tl---------~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW 403 (485)
||+++ |++|+|||+. |+++.++ .+|..+ |.+++|||||++|+++ +|+|++|
T Consensus 1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~fs~dg~~l~s~-------------~g~v~vw 1203 (1249)
T 3sfz_A 1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGW-----VTDVCFSPDSKTLVSA-------------GGYLKWW 1203 (1249)
T ss_dssp EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSC-----CCEEEECTTSSCEEEE-------------SSSEEEB
T ss_pred EEEEeCCCEEEEEECCCCceEEEeccccccccccccCce-----EEEEEECCCCCEEEEC-------------CCeEEEE
Confidence 99999 9999999996 9988776 678777 9999999999999987 3899999
Q ss_pred eCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 404 NILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 404 dl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
|+.+|+++.++.+|.. .|++++|+|||+.|++|+.||+|++|
T Consensus 1204 d~~~g~~~~~~~~~~~--------------------------------------~i~~~~~s~dg~~l~~~~~dg~v~vw 1245 (1249)
T 3sfz_A 1204 NVATGDSSQTFYTNGT--------------------------------------NLKKIHVSPDFRTYVTVDNLGILYIL 1245 (1249)
T ss_dssp CSSSCBCCCCCCCSSC--------------------------------------CCCCCEECSSSCCEEEECTTCCEEEE
T ss_pred ECCCCceeeeeeccCC--------------------------------------cccEEEECCCCCEEEEecCCcEEEEE
Confidence 9999999999988862 78899999999999999999999999
Q ss_pred cC
Q 011452 484 SN 485 (485)
Q Consensus 484 d~ 485 (485)
++
T Consensus 1246 ~l 1247 (1249)
T 3sfz_A 1246 QV 1247 (1249)
T ss_dssp CC
T ss_pred ee
Confidence 85
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=372.56 Aligned_cols=291 Identities=12% Similarity=0.115 Sum_probs=247.8
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND 149 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~ 149 (485)
+.++..|..|..++.++.+.|. +++||+++.||+|++||..+|+.+.++.+ |...|++++|+|+|+
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-------------~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~ 68 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-------------EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKN 68 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-------------SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGT
T ss_pred cccceeeecCCCceEEEEECCC-------------CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCC
Confidence 4455667777776666666666 99999999999999999999999999987 888999999999999
Q ss_pred EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC-eEE
Q 011452 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TML 228 (485)
Q Consensus 150 ~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g-~~l 228 (485)
.||+++. | ++++||++.+|+... .+. .+...+..++|+ |+|+.|++++.|++|+|||+.++ .+.
T Consensus 69 ~l~~~~~----d------g~i~vw~~~~~~~~~---~~~-~~~~~v~~~~~s-~~~~~l~~~~~dg~i~vw~~~~~~~~~ 133 (814)
T 3mkq_A 69 WIIVGSD----D------FRIRVFNYNTGEKVV---DFE-AHPDYIRSIAVH-PTKPYVLSGSDDLTVKLWNWENNWALE 133 (814)
T ss_dssp EEEEEET----T------SEEEEEETTTCCEEE---EEE-CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEGGGTSEEE
T ss_pred EEEEEeC----C------CeEEEEECCCCcEEE---EEe-cCCCCEEEEEEe-CCCCEEEEEcCCCEEEEEECCCCceEE
Confidence 9999773 4 599999999888622 233 245667789998 79999999999999999999987 566
Q ss_pred EEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-cceeEEEEEe-cCCCEEEEEeCCCcEE
Q 011452 229 YSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIE-QFNEKLLVKQENENLQ 303 (485)
Q Consensus 229 ~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~-~~~~~lls~s~D~tIk 303 (485)
..+. ...|.+++|+| ++.++++++. |++|++||+.+++...++..+. ..+..++|++ +++..|++++.|++|+
T Consensus 134 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~ 211 (814)
T 3mkq_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCL--DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIK 211 (814)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEET--TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEE
T ss_pred EEEcCCCCcEEEEEEEcCCCCEEEEEeC--CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEE
Confidence 6664 46899999999 7766666543 4899999999999988887554 7788999974 2677888899999999
Q ss_pred EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC--E
Q 011452 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--L 379 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~--~ 379 (485)
+||+++++++.++.+|...|.+++|+|+|++|++++ |++|++||+. ++++.++..|... ++.++|+|+|+ +
T Consensus 212 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~~ 286 (814)
T 3mkq_A 212 IWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLER-----SWCIATHPTGRKNY 286 (814)
T ss_dssp EEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSS-----EEEEEECTTCGGGE
T ss_pred EEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCc-----EEEEEEccCCCceE
Confidence 999999999999999999999999999999999999 9999999996 9999999999876 99999999998 5
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
+++++ |+.+.+|++.++
T Consensus 287 ~~~~~------------~~~~~~~~~~~~ 303 (814)
T 3mkq_A 287 IASGF------------DNGFTVLSLGND 303 (814)
T ss_dssp EEEEE------------TTEEEEEECSCC
T ss_pred EEEEe------------CCCEEEEEcCCC
Confidence 77766 477889987653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=321.75 Aligned_cols=278 Identities=13% Similarity=0.180 Sum_probs=238.0
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCC
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNG 205 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG 205 (485)
+++.++.+ |...|++|+| |+++.||+++. | ++++||++..++.. ..+. .+...+..++|+ |+|
T Consensus 9 ~~~~~l~~-h~~~v~~~~~-~~~~~l~s~~~----d------g~v~vw~~~~~~~~---~~~~-~~~~~v~~~~~~-~~~ 71 (313)
T 3odt_A 9 QLSATLKG-HDQDVRDVVA-VDDSKVASVSR----D------GTVRLWSKDDQWLG---TVVY-TGQGFLNSVCYD-SEK 71 (313)
T ss_dssp EEEEEECC-CSSCEEEEEE-EETTEEEEEET----T------SEEEEEEESSSEEE---EEEE-ECSSCEEEEEEE-TTT
T ss_pred HHHHHhhC-CCCCcEEEEe-cCCCEEEEEEc----C------CcEEEEECCCCEEE---EEee-cCCccEEEEEEC-CCC
Confidence 67777877 8889999999 99999999774 3 59999999777652 2232 244567789998 799
Q ss_pred eEEEEeeCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce
Q 011452 206 KVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g---~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~ 280 (485)
++|++++.|++|++|++.+. +++..+. ...|.+++|+ +..++++ + .|++|++|| .++.+..+..|...+
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~-~--~d~~i~~~d--~~~~~~~~~~~~~~v 145 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQ-DGVVISG-S--WDKTAKVWK--EGSLVYNLQAHNASV 145 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEE-TTEEEEE-E--TTSEEEEEE--TTEEEEEEECCSSCE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEec-CCEEEEE-e--CCCCEEEEc--CCcEEEecccCCCce
Confidence 99999999999999998754 4566664 4689999994 4455554 2 358999999 789999999999999
Q ss_pred eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee
Q 011452 281 KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE 357 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~ 357 (485)
..++|.++++..+++++.|++|++|| .+++...+.. |...+.+++|+|+++ |++++ |++|++||++ ++++.++.
T Consensus 146 ~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~ 222 (313)
T 3odt_A 146 WDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE 222 (313)
T ss_dssp EEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE
T ss_pred eEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh
Confidence 99999977899999999999999999 5677777777 999999999999999 77888 9999999996 99999999
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
+|... |.+++|+||| .|++++. ||+|+|||+.+++++.++..|..
T Consensus 223 ~~~~~-----i~~~~~~~~~-~l~~~~~-----------dg~v~iwd~~~~~~~~~~~~~~~------------------ 267 (313)
T 3odt_A 223 GHESF-----VYCIKLLPNG-DIVSCGE-----------DRTVRIWSKENGSLKQVITLPAI------------------ 267 (313)
T ss_dssp CCSSC-----EEEEEECTTS-CEEEEET-----------TSEEEEECTTTCCEEEEEECSSS------------------
T ss_pred cCCce-----EEEEEEecCC-CEEEEec-----------CCEEEEEECCCCceeEEEeccCc------------------
Confidence 99977 9999999999 5788876 79999999999999999999873
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++++|+|||+ |++|+.||+|++||.
T Consensus 268 --------------------~i~~~~~~~~~~-~~~~~~dg~i~iw~~ 294 (313)
T 3odt_A 268 --------------------SIWSVDCMSNGD-IIVGSSDNLVRIFSQ 294 (313)
T ss_dssp --------------------CEEEEEECTTSC-EEEEETTSCEEEEES
T ss_pred --------------------eEEEEEEccCCC-EEEEeCCCcEEEEeC
Confidence 899999999999 667999999999984
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=355.51 Aligned_cols=346 Identities=12% Similarity=0.070 Sum_probs=274.6
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccC----cEEEEeecCCccc-EEEEEEee--CCCEEEEEEeecCCCCcc
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETN----QRICFLNVTADEV-IRSLFYNK--NNDSLITVSVYASDNFSS 164 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG----~~l~tl~g~~~~~-i~sv~~sp--dg~~Las~S~d~~~d~st 164 (485)
++..|..++|+ +++||+++ ++.+++|+++++ +++.++.+ |... |.+++|+| ||+.||+++. |
T Consensus 17 ~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~-h~~~~v~~~~~sp~~~~~~l~s~~~----d--- 87 (615)
T 1pgu_A 17 QRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG-HGSSVVTTVKFSPIKGSQYLCSGDE----S--- 87 (615)
T ss_dssp CTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT-TTTSCEEEEEECSSTTCCEEEEEET----T---
T ss_pred ccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec-CCCceEEEEEECcCCCCCEEEEecC----C---
Confidence 55667777777 89999998 899999999999 89998987 8888 99999999 9999999774 4
Q ss_pred cceeEEEEeEeccC------CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC----CcEEEeecCCCeEEEEEc--
Q 011452 165 LRCRSTRIEYIRRG------KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS-- 232 (485)
Q Consensus 165 L~~~t~~lw~i~~G------~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D----~tiKlWdl~~g~~l~tl~-- 232 (485)
++++||++.+| +... ...+. .+...+..++|+ |+|++|++++.| +.|++|| +++++.++.
T Consensus 88 ---g~v~vw~~~~~~~~~~~~~~~-~~~~~-~~~~~v~~~~~s-~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~ 159 (615)
T 1pgu_A 88 ---GKVIVWGWTFDKESNSVEVNV-KSEFQ-VLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH 159 (615)
T ss_dssp ---SEEEEEEEEEEGGGTEEEEEE-EEEEE-CCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC
T ss_pred ---CEEEEEeCCCCcccccccccc-cchhh-cccccEEEEEEe-CCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC
Confidence 59999999766 2110 11222 234567789998 799999999988 6899998 667777775
Q ss_pred CCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCc---ceeEEEEEecC-CCEEEEEeCCCcEEEEEC
Q 011452 233 DKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---RNKKVDFIEQF-NEKLLVKQENENLQILDV 307 (485)
Q Consensus 233 ~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~---~~~~V~f~~~~-~~~lls~s~D~tIkIWDv 307 (485)
...|.+++|+|++. ++++++ .|++|++||+++++++.++.+|.. .+..++|+ |+ +..|++++.|++|++||+
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~ 236 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS-PDSGEFVITVGSDRKISCFDG 236 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC-STTCCEEEEEETTCCEEEEET
T ss_pred CccEEEEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC-CCCCCEEEEEeCCCeEEEEEC
Confidence 45899999999764 444444 458999999999999999999988 89999997 66 788899999999999999
Q ss_pred CCCeeEEec-c---cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 308 RNFELTEVS-R---TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 308 ~tg~~~~~l-~---gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
++++++..+ . +|...|.+++|+ ++++|++++ |++|++||++ ++++.++..|...+.. .+..+.|+ ++++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~l~ 313 (615)
T 1pgu_A 237 KSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN-QQVGVVAT-GNGRII 313 (615)
T ss_dssp TTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG-CEEEEEEE-ETTEEE
T ss_pred CCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC-ceeEEEeC-CCCeEE
Confidence 999999998 6 899999999999 999999999 9999999996 9999999988422111 27788885 999999
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccc-----cCCCCCCCCccccccccccccccchhccc
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS-----CSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
+++. |++|++||+.+++++.++.+|.+ +....+. .+.++....|+... +. ..+.
T Consensus 314 ~~~~-----------~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~~l~~~~~dg~i~~w~~~~------~~---~~~~ 372 (615)
T 1pgu_A 314 SLSL-----------DGTLNFYELGHDEVLKTISGHNK-GITALTVNPLISGSYDGRIMEWSSSS------MH---QDHS 372 (615)
T ss_dssp EEET-----------TSCEEEEETTEEEEEEEECCCSS-CEEEEETTTTEEEETTSCEEETTTTE------EE---CCCC
T ss_pred EEEC-----------CCCEEEEECCCCcEEEEEeCCCC-CEEEEEecCcEEECCCCeEEEEEchh------hc---Cccc
Confidence 9987 79999999999999999999974 2222222 22222222222210 00 1223
Q ss_pred CCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 457 EDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|++++| ++++.|++++.|++|++|+
T Consensus 373 ~~v~~~~~-~~~~~l~~~~~d~~i~~~~ 399 (615)
T 1pgu_A 373 NLIVSLDN-SKAQEYSSISWDDTLKVNG 399 (615)
T ss_dssp SCEEEEEC-CSTTCCEEEETTTEEEETT
T ss_pred CceEEEEE-CCCcEEEEEeCCCCEEEEE
Confidence 47888888 6678888999999999997
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=336.20 Aligned_cols=293 Identities=14% Similarity=0.149 Sum_probs=236.1
Q ss_pred cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC-
Q 011452 126 QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN- 204 (485)
Q Consensus 126 ~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn- 204 (485)
+.+..+..+|...|.+|+|+|+|+.|++++.....| ++++||++..+++. .+...++...+..++|+ |+
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d------~~v~iw~~~~~~~~---~~~~~~~~~~v~~~~~~-~~~ 77 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT------GVIQLYEIQHGDLK---LLREIEKAKPIKCGTFG-ATS 77 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC------EEEEEEEECSSSEE---EEEEEEESSCEEEEECT-TCC
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC------cEEEEEeCCCCccc---ceeeecccCcEEEEEEc-CCC
Confidence 344444445999999999999997776544211125 79999999888762 23333445567789998 56
Q ss_pred --CeEEEEeeCCCcEEEeecCCCe-EEEEEc--CCcEEEEE------EcCCceEEEEEcCCCCeeEEEEecCCCe-EEEE
Q 011452 205 --GKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIK------ISPGIMLLIFTKASGHVPLKILSIEDGT-VLKS 272 (485)
Q Consensus 205 --G~~Las~s~D~tiKlWdl~~g~-~l~tl~--~~~V~~Va------fSpg~~ll~sss~~~D~tIklWdi~tG~-~L~t 272 (485)
|++|++++.|++|++||+.+++ ++.++. ...|.+++ |+|++.++++++. |++|++||+++++ ++.+
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~--d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSR--DGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEET--TSCEEEECTTSCSSCSEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeC--CCeEEEEeCCCCCCccee
Confidence 7999999999999999999988 777775 45799995 5676666666543 5899999999998 7888
Q ss_pred eecCCc----ceeEEEEEe---cCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC---CCcEEEEEe-CC
Q 011452 273 FNHLLH----RNKKVDFIE---QFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY---ENQLFLTFR-NR 341 (485)
Q Consensus 273 l~~~~~----~~~~V~f~~---~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp---dg~llaS~s-D~ 341 (485)
+..|.+ .+.+++|.. +++..+++++.|++|++||+++++++.. ..|...|.+++|+| ++++|++++ |+
T Consensus 156 ~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg 234 (357)
T 3i2n_A 156 MEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEG 234 (357)
T ss_dssp ECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTT
T ss_pred ccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCC
Confidence 876655 677888632 6788899999999999999999998655 57888999999999 999999999 99
Q ss_pred cEEEEeCC-CcEEEEee-----cCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCC------
Q 011452 342 TVAVWNFR-GELVTSFE-----DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTG------ 408 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~-----gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TG------ 408 (485)
+|++||++ ++++..+. +|... |.+++|+|+|+ +|++++. ||+|+|||+.++
T Consensus 235 ~i~i~d~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 235 KFHVFDMRTQHPTKGFASVSEKAHKST-----VWQVRHLPQNRELFLTAGG-----------AGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp EEEEEEEEEEETTTEEEEEEEECCSSC-----EEEEEEETTEEEEEEEEET-----------TSEEEEEEEECCSCC--C
T ss_pred eEEEEeCcCCCcccceeeeccCCCcCC-----EEEEEECCCCCcEEEEEeC-----------CCcEEEeecCCCcccccc
Confidence 99999996 66554444 89877 99999999999 8999987 799999999864
Q ss_pred -------------eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE-Ee
Q 011452 409 -------------KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY-TG 474 (485)
Q Consensus 409 -------------k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La-Sg 474 (485)
+++.++.+|.. .|++++|+|||+.|+ ||
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~~~~~--------------------------------------~v~~~~~s~~~~~l~~s~ 340 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVTLSTQ--------------------------------------PISSLDWSPDKRGLCVCS 340 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEECCSS--------------------------------------CEEEEEECSSSTTEEEEE
T ss_pred cCCCCccccccccceeeccccCCC--------------------------------------CeeEEEEcCCCCeEEEEe
Confidence 57888888862 899999999999998 89
Q ss_pred cCCCcEEEccC
Q 011452 475 NRHGLVHVWSN 485 (485)
Q Consensus 475 s~DgtVklWd~ 485 (485)
+.|++|+|||.
T Consensus 341 ~~d~~i~iw~~ 351 (357)
T 3i2n_A 341 SFDQTVRVLIV 351 (357)
T ss_dssp ETTSEEEEEEE
T ss_pred cCCCcEEEEEC
Confidence 99999999983
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=335.96 Aligned_cols=289 Identities=11% Similarity=0.152 Sum_probs=238.3
Q ss_pred EEeecCCcccEEEEEEeeC---CC-EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCC
Q 011452 129 CFLNVTADEVIRSLFYNKN---ND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDV 203 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spd---g~-~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~p 203 (485)
..+..+|...|.+|+|+|+ ++ .+++++ +++ .++||++.+++.......+.. .+...+..++|+ |
T Consensus 11 ~~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~---~~~-------~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 79 (366)
T 3k26_A 11 NSLKEDHNQPLFGVQFNWHSKEGDPLVFATV---GSN-------RVTLYECHSQGEIRLLQSYVDADADENFYTCAWT-Y 79 (366)
T ss_dssp EEEECTTCSCEEEEEECTTCCTTSCEEEEEE---ETT-------EEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEE-E
T ss_pred EEeecCCCCceEEEEEecccCCCCceEEEEC---CCC-------EEEEEEcCCCcEEEeeeeccccCCCCcEEEEEec-c
Confidence 3455569999999999984 54 333322 244 899999987776321111211 123446689998 6
Q ss_pred C----CeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEe---
Q 011452 204 N----GKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSF--- 273 (485)
Q Consensus 204 n----G~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl--- 273 (485)
+ |++|++++.|++|+|||+.+++++.++. ...|.+++|+| ++.++++++. |++|+|||+++++++..+
T Consensus 80 ~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 80 DSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK--DHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp CTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET--TSCEEEEETTTTEEEEEECST
T ss_pred CCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC--CCeEEEEEeecCeEEEEeccc
Confidence 7 7899999999999999999999998886 45899999999 7776666553 589999999999999999
Q ss_pred ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc----------------------------CCCceEE
Q 011452 274 NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT----------------------------EFMTPSA 325 (485)
Q Consensus 274 ~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g----------------------------h~~~v~a 325 (485)
.+|...+..++|+ |++..|++++.|++|++||+++++++..+.. |...|.+
T Consensus 158 ~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 236 (366)
T 3k26_A 158 EGHRDEVLSADYD-LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDC 236 (366)
T ss_dssp TSCSSCEEEEEEC-TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCE
T ss_pred ccccCceeEEEEC-CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEE
Confidence 6888999999997 6788999999999999999999877655544 9999999
Q ss_pred EEEcCCCcEEEEEe-CCcEEEEeCC-Cc--------------EEEEeecCCCCCCCCCeeEEEECCC--CCEEEEEecCC
Q 011452 326 FIFLYENQLFLTFR-NRTVAVWNFR-GE--------------LVTSFEDHLLWHPDCNTNNIYITSD--QDLIISYCKAD 387 (485)
Q Consensus 326 vaFspdg~llaS~s-D~TIklWd~~-G~--------------ll~tl~gH~~~~~~~~v~svafSpD--G~~LaS~s~d~ 387 (485)
++|+ +++|++++ |++|++||+. ++ ++.++.+|... |+.++|+|| |++|++++.
T Consensus 237 ~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~~l~~~~~-- 307 (366)
T 3k26_A 237 VRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCD-----IWYMRFSMDFWQKMLALGNQ-- 307 (366)
T ss_dssp EEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCC-----SSCCCCEECTTSSEEEEECT--
T ss_pred EEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCc-----EEEEEEcCCCCCcEEEEEec--
Confidence 9999 77999999 9999999985 54 48899999877 899999999 999999986
Q ss_pred CCCCCCcCCCCeEEEEeCCCCe----EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 388 SDDPLAEGNAGSINISNILTGK----CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~TGk----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
||+|+|||+.+++ .+.++.+|.. . ..|++|+
T Consensus 308 ---------dg~i~vwd~~~~~~~~~~~~~~~~~~~-------------------------~-----------~~v~~~~ 342 (366)
T 3k26_A 308 ---------VGKLYVWDLEVEDPHKAKCTTLTHHKC-------------------------G-----------AAIRQTS 342 (366)
T ss_dssp ---------TSCEEEEECCSSSGGGCEEEEECCTTC-------------------------C-----------SCEEEEE
T ss_pred ---------CCcEEEEECCCCCCccccceEEccccc-------------------------C-----------CceEEEE
Confidence 7999999999986 4558888841 0 2899999
Q ss_pred EcCCCCEEEEecCCCcEEEccC
Q 011452 464 YDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 464 fspDg~~LaSgs~DgtVklWd~ 485 (485)
|+|||+.|++|+.||+|+|||+
T Consensus 343 ~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 343 FSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC
T ss_pred eCCCCCeEEEEeCCCEEEEEEe
Confidence 9999999999999999999985
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=336.03 Aligned_cols=300 Identities=16% Similarity=0.155 Sum_probs=240.2
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEe----ccCCcCcc---cc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYI----RRGKPDAG---FA 185 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i----~~G~~~~~---~~ 185 (485)
...+.+|+.+.......... |...|.+++|+|+|+ +||+++. | ++++||++ ..|+.... ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~~l~~~~~----d------g~i~iw~~~~~~~~~~~~~~~~~~~ 92 (425)
T 1r5m_A 24 NSIDSSDDLDGFVKILKEIV-KLDNIVSSTWNPLDESILAYGEK----N------SVARLARIVETDQEGKKYWKLTIIA 92 (425)
T ss_dssp ----------CCCEECEEEE-ECSCCSEEEECSSCTTEEEEEET----B------TEEEEEEEEEC------CEEEEEEE
T ss_pred ccccccccchhhhhheeeee-ccCceEEEEECCCCCcEEEEecC----C------ceEEEEEEecccCCccccccccccc
Confidence 34556777654443332222 557899999999999 9999774 3 49999999 88872000 01
Q ss_pred eeee---------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCC
Q 011452 186 LFES---------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 186 lf~~---------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~ 254 (485)
.+.. .+...+..++|+ |+|++|++++.|++|+||| .+++++..+. ...|.+++|+|++.++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-- 168 (425)
T 1r5m_A 93 ELRHPFALSASSGKTTNQVTCLAWS-HDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMD-- 168 (425)
T ss_dssp EEECCCCCC------CBCEEEEEEC-TTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEE--
T ss_pred cccccccccccccCCCCceEEEEEc-CCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEe--
Confidence 1111 023356789998 7999999999999999999 6788888886 45899999999776655554
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcc---------------eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHR---------------NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~---------------~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh 319 (485)
.|++|++||+++|+++..+..+... +..++|++ ++.+++++.|++|++||+++++++..+.+|
T Consensus 169 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~ 246 (425)
T 1r5m_A 169 VENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPGPKGAIFVYQITEKTPTGKLIGH 246 (425)
T ss_dssp TTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEE--TTEEEEECGGGCEEEEETTCSSCSEEECCC
T ss_pred cCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcC--CCEEEEEcCCCeEEEEEcCCCceeeeeccC
Confidence 3589999999999999999987766 88999974 578999999999999999999999999999
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
...|.+++|+|++++|++++ |++|++||++ ++++.++.+|... |.+++|+||| +|++++. |
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----i~~~~~~~~~-~l~~~~~-----------d 309 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQS-----IVSASWVGDD-KVISCSM-----------D 309 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSC-----EEEEEEETTT-EEEEEET-----------T
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCcc-----EEEEEECCCC-EEEEEeC-----------C
Confidence 99999999999999999999 9999999996 9999999999877 9999999999 9999986 7
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
++|+|||+.+++++.++.+|.. .|++++|+|||+.|++|+.|
T Consensus 310 ~~i~i~d~~~~~~~~~~~~~~~--------------------------------------~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 310 GSVRLWSLKQNTLLALSIVDGV--------------------------------------PIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SEEEEEETTTTEEEEEEECTTC--------------------------------------CEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEECCCCcEeEecccCCc--------------------------------------cEEEEEEcCCCCEEEEEECC
Confidence 9999999999999999999873 89999999999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
|+|+|||.
T Consensus 352 g~i~i~~~ 359 (425)
T 1r5m_A 352 GQVNVYDL 359 (425)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEEC
Confidence 99999984
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-42 Score=338.44 Aligned_cols=299 Identities=9% Similarity=0.011 Sum_probs=241.0
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc---ceeeeccccCceEEEEeCCC-
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF---ALFESESLKWPGFVEFDDVN- 204 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~---~lf~~~~~~~~~~V~Fs~pn- 204 (485)
.++.+ |...|.+|+|+| +.||+++. | ++++||++..++..... ..+. .+...+..++|+ |+
T Consensus 10 ~~~~~-h~~~i~~~~~~~--~~l~s~~~----d------g~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~-~~~ 74 (397)
T 1sq9_A 10 NAGKA-HDADIFSVSACN--SFTVSCSG----D------GYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVL-QAI 74 (397)
T ss_dssp EESSC-SSSCEEEEEECS--SEEEEEET----T------SEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEE-EEE
T ss_pred hhhhh-hhcCeEEEEecC--CeEEEEcC----C------CEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEe-ccc
Confidence 34555 889999999999 78999774 3 59999999888721111 1122 344567789998 68
Q ss_pred ---C---eEEEEeeCCCcEEEeecCCCeE-----EEEEc-------CCcEEEEEEc----CCceE-EEEEcCCCCeeEEE
Q 011452 205 ---G---KVLTYSAQDSIYKVFDLKNYTM-----LYSIS-------DKNVQEIKIS----PGIML-LIFTKASGHVPLKI 261 (485)
Q Consensus 205 ---G---~~Las~s~D~tiKlWdl~~g~~-----l~tl~-------~~~V~~VafS----pg~~l-l~sss~~~D~tIkl 261 (485)
| ++|++++.|++|+|||+.++++ +..+. ...|.+++|+ |++.+ +++++ .|++|++
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~--~dg~i~i 152 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYI 152 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEe--CCCcEEE
Confidence 9 9999999999999999998886 77764 2679999999 86665 55554 3489999
Q ss_pred EecCC------CeEEE-----Eeec-------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc---C-
Q 011452 262 LSIED------GTVLK-----SFNH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT---E- 319 (485)
Q Consensus 262 Wdi~t------G~~L~-----tl~~-------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g---h- 319 (485)
||+.+ ++++. ++.+ |...+..++|+ |++ .+++++.|++|+|||+++++++..+.+ |
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEEC-CCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 99999 88887 8854 77889999997 567 888889999999999999999999998 9
Q ss_pred --CCceEEEEEcCCCcEEEEEe-C---CcEEEEeCC-CcEEEEeec-------------CCCCCCCCCeeEEEECCCCCE
Q 011452 320 --FMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFED-------------HLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 320 --~~~v~avaFspdg~llaS~s-D---~TIklWd~~-G~ll~tl~g-------------H~~~~~~~~v~svafSpDG~~ 379 (485)
...|.+++|+|++++|++++ | ++|++||++ ++++.++.+ |... |.+++|+|||++
T Consensus 231 ~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~ 305 (397)
T 1sq9_A 231 NNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGET 305 (397)
T ss_dssp CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSE
T ss_pred ccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc-----EEEEEECCCCCE
Confidence 99999999999999999999 9 999999996 999999999 8877 999999999999
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec------CCCCCCCCcccccCCCCCCCCccccccccccccccchh
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR------ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVA 453 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~------gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (485)
|++++. |++|+|||+.+++++.++. +|.. . ...+. .|. ..
T Consensus 306 l~~~~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~------~-~~~g~--------~~~--------~~ 351 (397)
T 1sq9_A 306 LCSAGW-----------DGKLRFWDVKTKERITTLNMHCDDIEIEE------D-ILAVD--------EHG--------DS 351 (397)
T ss_dssp EEEEET-----------TSEEEEEETTTTEEEEEEECCGGGCSSGG------G-CCCBC--------TTS--------CB
T ss_pred EEEEeC-----------CCeEEEEEcCCCceeEEEecccCcccchh------h-hhccc--------ccc--------cc
Confidence 999997 7999999999999999999 7610 0 00000 000 00
Q ss_pred cccCCeEEEEEcCCC----------CEEEEecCCCcEEEccC
Q 011452 454 EALEDITALFYDEDR----------NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 454 ~~l~~V~sl~fspDg----------~~LaSgs~DgtVklWd~ 485 (485)
.+...|++++|+||| +.|+||+.||+|+||++
T Consensus 352 ~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~ 393 (397)
T 1sq9_A 352 LAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE 393 (397)
T ss_dssp CSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred ccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEc
Confidence 001389999999999 79999999999999983
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=323.45 Aligned_cols=275 Identities=11% Similarity=0.078 Sum_probs=223.5
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
.+.|+|||+| .||++. | ++|+|||+.+|++.. +++. ++..++.+|+|+ |+|++||+|+.|++|
T Consensus 28 ~~~l~WS~~~-~lAvg~----D-------~tV~iWd~~tg~~~~---~~~~~~~~~~V~~v~~~-~~~~~l~sgs~Dg~v 91 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL----D-------NSVYLWSASSGDILQ---LLQMEQPGEYISSVAWI-KEGNYLAVGTSSAEV 91 (318)
T ss_dssp CBCEEECTTS-EEEEEE----T-------TEEEEEETTTCCEEE---EEECCSTTCCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred ceEEEECCCC-EEEEEe----C-------CEEEEEECCCCCEEE---EEEecCCCCeEEEEEEC-CCCCEEEEEECCCcE
Confidence 4679999987 666533 3 499999999998732 4432 355667899998 799999999999999
Q ss_pred EEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 218 KVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 218 KlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
+|||+++++++.++.++......+++.+.++++++ .++.+++|+..++ ..+.++.+|...+..++|. +++..++++
T Consensus 92 ~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~s~ 168 (318)
T 4ggc_A 92 QLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGS--RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHLASG 168 (318)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEE--TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEEE
T ss_pred EEeecCCceeEEEecCccceEEEeecCCCEEEEEe--cCCceEeeecCCCceeEEEEcCccCceEEEEEc-CCCCEEEEE
Confidence 99999999999998765444444554334444444 3479999998876 4568889999999999986 678889999
Q ss_pred eCCCcEEEEECCCCee----EEecccCCCceEEEEEcCCCcEE---EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 297 QENENLQILDVRNFEL----TEVSRTEFMTPSAFIFLYENQLF---LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~----~~~l~gh~~~v~avaFspdg~ll---aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
+.|++|+|||+++++. ......|...|.+++++|++..+ ++++ |++|+|||.+ ++...... |...
T Consensus 169 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~----- 242 (318)
T 4ggc_A 169 GNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ----- 242 (318)
T ss_dssp ETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC-----
T ss_pred ecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee-----
Confidence 9999999999998764 44556788899999999977643 3556 9999999997 66665554 4434
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
+..++|+|+++.+++++. +.|++|+|||+.+|+++++|++|.+
T Consensus 243 v~~~~~~~~~~~~~~~sg---------~~d~~i~iwd~~~~~~~~~l~gH~~---------------------------- 285 (318)
T 4ggc_A 243 VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS---------------------------- 285 (318)
T ss_dssp EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS----------------------------
T ss_pred eeeeeecccccceEEEEE---------cCCCEEEEEECCCCcEEEEEcCCCC----------------------------
Confidence 899999999999998763 3489999999999999999999983
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+|||+.|||||.||+|||||+
T Consensus 286 ----------~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 286 ----------RVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ----------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ----------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999985
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=358.54 Aligned_cols=301 Identities=12% Similarity=0.090 Sum_probs=235.8
Q ss_pred EEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee-eccccCceEEEEeCCCCe
Q 011452 129 CFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE-SESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~-~~~~~~~~~V~Fs~pnG~ 206 (485)
.+..+ |+..|.+|+|+| ++.+||++|. | ++|+||++..++... ++. .+|...+..|+|+|.||.
T Consensus 113 ~~~~~-~~~~V~~l~~~P~~~~~lasGs~----d------g~i~lWd~~~~~~~~---~~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 113 QKAAP-FDRRATSLAWHPTHPSTVAVGSK----G------GDIMLWNFGIKDKPT---FIKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp CEEEE-CSSCEEEEEECSSCTTCEEEEET----T------SCEEEECSSCCSCCE---EECCCSSSCCCCEEEECSSCTT
T ss_pred ccCCC-CCCCEEEEEEeCCCCCEEEEEeC----C------CEEEEEECCCCCcee---EEEccCCCCCEEEEEEeCCCCC
Confidence 34445 788899999999 5678988774 4 599999998776522 222 135567889999855899
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~ 282 (485)
+|+++|.|++|||||++++.+...... ..|.+++|+|++.++++++ .|++|+|||++ |+++.++.+|...+.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~--~dg~i~~wd~~-~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD--NVGNVILLNMD-GKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC--SSSBEEEEESS-SCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe--CCCcEeeeccC-cceeEEEecccceEEe
Confidence 999999999999999987665433332 3578999999777766654 45899999984 6788999999999999
Q ss_pred EEEEecCCC-EEEEEeCCCcEEEEECCCCeeEEe---cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 283 VDFIEQFNE-KLLVKQENENLQILDVRNFELTEV---SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 283 V~f~~~~~~-~lls~s~D~tIkIWDv~tg~~~~~---l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
|+|+ |++. .+++++.|++|+|||+++++.... ..+|...|++++|+|||++|+|++ |++|+|||+. +++...+
T Consensus 256 v~~~-p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~ 334 (435)
T 4e54_B 256 VALN-PCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGL 334 (435)
T ss_dssp EEEC-TTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEE
T ss_pred eeec-CCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEE
Confidence 9997 5555 566788999999999998775443 368999999999999999999999 9999999996 9999999
Q ss_pred ecCCCCCCC-CCeeEEEECCCCCEEEEEecCCCCC-CCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 357 EDHLLWHPD-CNTNNIYITSDQDLIISYCKADSDD-PLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 357 ~gH~~~~~~-~~v~svafSpDG~~LaS~s~d~~~d-~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
.+|...+.. ..+....|+|++.++++++.++..- ......+++|+|||+.+|+++.++.++..
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~--------------- 399 (435)
T 4e54_B 335 IPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPES--------------- 399 (435)
T ss_dssp CCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSC---------------
T ss_pred ecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCC---------------
Confidence 888753221 1234578899999998887543222 22233567999999999999999875431
Q ss_pred CCccccccccccccccchhcccCCeEEE-EEcCCCCEEEEecCCCcEEEccC
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITAL-FYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl-~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|.++ +|+|||++||||+ |++|+||+.
T Consensus 400 ----------------------~~v~s~~~fspdg~~lasg~-d~~i~iW~~ 428 (435)
T 4e54_B 400 ----------------------SGISSLNEFNPMGDTLASAM-GYHILIWSQ 428 (435)
T ss_dssp ----------------------CCCCCEEEECTTSSCEEEEC-SSEEEECCC
T ss_pred ----------------------CcEEEEEEECCCCCEEEEEc-CCcEEEEEC
Confidence 267776 7999999999997 889999984
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=347.44 Aligned_cols=283 Identities=10% Similarity=0.084 Sum_probs=237.1
Q ss_pred cEEEEEEeeCCC-EEEEEEeec------CCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEE
Q 011452 138 VIRSLFYNKNND-SLITVSVYA------SDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 138 ~i~sv~~spdg~-~Las~S~d~------~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las 210 (485)
.|.+++|+|+|+ .||+++..+ +.| ++++||++..++...-...+. +...+..++|+ |+|++|++
T Consensus 14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d------~~v~iw~~~~~~~~~~~~~~~--~~~~v~~~~~s-~~~~~l~~ 84 (416)
T 2pm9_A 14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTD------SSLELWSLLAADSEKPIASLQ--VDSKFNDLDWS-HNNKIIAG 84 (416)
T ss_dssp ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCC------CCCEEEESSSGGGCSCSCCCC--CSSCEEEEEEC-SSSSCEEE
T ss_pred hcceEeeCCCCCCEEEEEecCcccccccCCC------CeEEEEEccCCCCCcEEEEEe--cCCceEEEEEC-CCCCeEEE
Confidence 578899999998 888874444 455 799999998775321112222 34456789998 79999999
Q ss_pred eeCCCcEEEeecCC----CeEEEEEc--CCcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCe------EEE---Eee
Q 011452 211 SAQDSIYKVFDLKN----YTMLYSIS--DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGT------VLK---SFN 274 (485)
Q Consensus 211 ~s~D~tiKlWdl~~----g~~l~tl~--~~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~------~L~---tl~ 274 (485)
++.|++|+|||+.+ .+++.++. ...|.+++|+|+ +.++++++ .|++|+|||+.+++ ... .+.
T Consensus 85 ~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGG--NNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEEC--SSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred EccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEc--CCCeEEEEECCCCcccccccccccccccc
Confidence 99999999999987 35777775 458999999985 66655544 45899999999997 333 346
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC------CCceEEEEEcCCC-cEEEEEe-CC---cE
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE------FMTPSAFIFLYEN-QLFLTFR-NR---TV 343 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh------~~~v~avaFspdg-~llaS~s-D~---TI 343 (485)
+|...+..++|++..+..+++++.|++|+|||+++++++..+..| ...|.+++|+|++ ++|++++ |+ +|
T Consensus 163 ~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i 242 (416)
T 2pm9_A 163 SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSI 242 (416)
T ss_dssp CSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCC
T ss_pred CCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceE
Confidence 788899999997432677888899999999999999999998776 7899999999997 6899999 88 99
Q ss_pred EEEeCC-C-cEEEEee-cCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 344 AVWNFR-G-ELVTSFE-DHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 344 klWd~~-G-~ll~tl~-gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
++||++ + +++.++. +|... |.+++|+| |+++|++++. |++|+|||+.+++++.++.+|.+
T Consensus 243 ~~~d~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~~l~s~~~-----------dg~v~~wd~~~~~~~~~~~~~~~ 306 (416)
T 2pm9_A 243 LIWDLRNANTPLQTLNQGHQKG-----ILSLDWCHQDEHLLLSSGR-----------DNTVLLWNPESAEQLSQFPARGN 306 (416)
T ss_dssp CEEETTSTTSCSBCCCSCCSSC-----EEEEEECSSCSSCEEEEES-----------SSEEEEECSSSCCEEEEEECSSS
T ss_pred EEEeCCCCCCCcEEeecCccCc-----eeEEEeCCCCCCeEEEEeC-----------CCCEEEeeCCCCccceeecCCCC
Confidence 999996 4 7888898 99877 99999999 9999999997 79999999999999999999973
Q ss_pred CCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC-CEEEEecCCCcEEEccC
Q 011452 420 LPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR-NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg-~~LaSgs~DgtVklWd~ 485 (485)
.|++++|+||+ +.|++|+.|++|+||++
T Consensus 307 --------------------------------------~v~~~~~s~~~~~~l~s~~~d~~i~iw~~ 335 (416)
T 2pm9_A 307 --------------------------------------WCFKTKFAPEAPDLFACASFDNKIEVQTL 335 (416)
T ss_dssp --------------------------------------CCCCEEECTTCTTEEEECCSSSEEEEEES
T ss_pred --------------------------------------ceEEEEECCCCCCEEEEEecCCcEEEEEc
Confidence 89999999999 89999999999999984
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=333.47 Aligned_cols=310 Identities=11% Similarity=0.144 Sum_probs=249.3
Q ss_pred eCCCeEEeeecccCcEEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee--
Q 011452 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE-- 188 (485)
Q Consensus 112 s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~-- 188 (485)
+.++++++|+.++++....+.+ |...|.+++|+| +|+.||+++. | ++++||++..++.........
T Consensus 20 ~~~~~~~v~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~~~~~----d------g~i~iw~~~~~~~~~~~~~~~~~ 88 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRDVERI-HGGGINTLDIEPVEGRYMLSGGS----D------GVIVLYDLENSSRQSYYTCKAVC 88 (408)
T ss_dssp HHHHHHHHHTEEECTTEEECCC-CSSCEEEEEECTTTCCEEEEEET----T------SCEEEEECCCCSSSSCEEECEEE
T ss_pred eccCcceeeccccCcceeeeec-cCCcEEEEEEecCCCCEEEEEcC----C------CeEEEEECCCCcccceEeccccc
Confidence 4567889999999999988877 888999999999 9999999774 3 589999998887643211100
Q ss_pred -------eccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC---CceEEEEEcCCCCe
Q 011452 189 -------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP---GIMLLIFTKASGHV 257 (485)
Q Consensus 189 -------~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp---g~~ll~sss~~~D~ 257 (485)
..+...+..++|++.++.+|++++.|++|++||+.+++++..+. ...+.+++|+| ++.++++++ .|+
T Consensus 89 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 166 (408)
T 4a11_B 89 SIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT--RGP 166 (408)
T ss_dssp EECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE--SSS
T ss_pred cccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc--CCC
Confidence 12445677899984488899999999999999999999888875 56899999997 333555544 348
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCE-EEEEeCCCcEEEEECCCCe-eEEec---------------ccCC
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQENENLQILDVRNFE-LTEVS---------------RTEF 320 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~-lls~s~D~tIkIWDv~tg~-~~~~l---------------~gh~ 320 (485)
.|++||+++++++.++.+|...+..++|+ |++.. +++++.|++|+|||+++++ ++..+ .+|.
T Consensus 167 ~v~~~d~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (408)
T 4a11_B 167 KVQLCDLKSGSCSHILQGHRQEILAVSWS-PRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHN 245 (408)
T ss_dssp SEEEEESSSSCCCEEECCCCSCEEEEEEC-SSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCS
T ss_pred eEEEEeCCCcceeeeecCCCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeecccccccc
Confidence 99999999999999999999999999997 56664 7778999999999999876 44444 6799
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC-eeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN-TNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~-v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
..|.+++|+|++++|++++ |++|++||++ ++.+..+.++........ ...+...+.+.+++ ++. |
T Consensus 246 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~ 313 (408)
T 4a11_B 246 GKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF-VPY-----------G 313 (408)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE-EEE-----------T
T ss_pred CceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE-Eec-----------C
Confidence 9999999999999999999 9999999996 887766665543211111 22333334444444 454 6
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 398 GSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
++|++||+.+++++.++.+|.. .|++++|+|||+.|+||+.|
T Consensus 314 ~~i~v~d~~~~~~~~~~~~~~~--------------------------------------~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 314 STIAVYTVYSGEQITMLKGHYK--------------------------------------TVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp TEEEEEETTTCCEEEEECCCSS--------------------------------------CEEEEEEETTTTEEEEEETT
T ss_pred CEEEEEECcCCcceeeeccCCC--------------------------------------eEEEEEEcCCCCEEEEECCC
Confidence 9999999999999999999973 89999999999999999999
Q ss_pred CcEEEccC
Q 011452 478 GLVHVWSN 485 (485)
Q Consensus 478 gtVklWd~ 485 (485)
|+|++||.
T Consensus 356 g~i~iw~~ 363 (408)
T 4a11_B 356 CNILAWVP 363 (408)
T ss_dssp SCEEEEEE
T ss_pred CeEEEEeC
Confidence 99999983
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=330.04 Aligned_cols=237 Identities=12% Similarity=0.149 Sum_probs=199.2
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC--CeEEEEEcC--CcEEEEEEcC--CceEEEEEcCCCCeeEEEEec
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSISD--KNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~--g~~l~tl~~--~~V~~VafSp--g~~ll~sss~~~D~tIklWdi 264 (485)
|...+..++|+ |+|++||+|+.|++|||||+.+ ++++.++.+ ..|++|+|+| ++.++++++ .|++|+|||+
T Consensus 8 h~~~V~~~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s--~D~~v~iWd~ 84 (297)
T 2pm7_B 8 HNEMIHDAVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVMIWKE 84 (297)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTTEEEEEEB
T ss_pred CcCceEEEEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEc--CCCEEEEEEc
Confidence 55677899998 8999999999999999999975 357777754 5899999985 244444544 4589999999
Q ss_pred CCCe--EEEEeecCCcceeEEEEEecC-CCEEEEEeCCCcEEEEECCCCee--EEecccCCCceEEEEEcCC--------
Q 011452 265 EDGT--VLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYE-------- 331 (485)
Q Consensus 265 ~tG~--~L~tl~~~~~~~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspd-------- 331 (485)
++|+ .+.++.+|...+.+|+|++.. +..|++++.|++|+|||++++.. ...+.+|...|.+++|+|+
T Consensus 85 ~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 164 (297)
T 2pm7_B 85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEH 164 (297)
T ss_dssp SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-------
T ss_pred CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccC
Confidence 9984 677888999999999997432 67888899999999999997642 4567899999999999997
Q ss_pred -----CcEEEEEe-CCcEEEEeCC-Cc----EEEEeecCCCCCCCCCeeEEEECCCC---CEEEEEecCCCCCCCCcCCC
Q 011452 332 -----NQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSDQ---DLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 332 -----g~llaS~s-D~TIklWd~~-G~----ll~tl~gH~~~~~~~~v~svafSpDG---~~LaS~s~d~~~d~~~~~~D 397 (485)
+++|||++ |++|+|||++ ++ ++.+|++|..+ |++|+|+|++ ++|||++. |
T Consensus 165 ~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~-----V~~v~~sp~~~~~~~las~s~-----------D 228 (297)
T 2pm7_B 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYMASVSQ-----------D 228 (297)
T ss_dssp -----CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------T
T ss_pred CCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc-----eEEEEECCCCCCceEEEEEEC-----------C
Confidence 57999999 9999999995 66 78899999988 9999999995 89999997 7
Q ss_pred CeEEEEeCCCCe---EEEEe--cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 398 GSINISNILTGK---CLAKI--RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 398 gtIklWdl~TGk---~l~tl--~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
++|+|||+.+++ ....+ .+|. ..|++++|+|||+.||
T Consensus 229 ~~v~iWd~~~~~~~~~~~~~~~~~~~--------------------------------------~~v~~~~~s~~g~~la 270 (297)
T 2pm7_B 229 RTCIIWTQDNEQGPWKKTLLKEEKFP--------------------------------------DVLWRASWSLSGNVLA 270 (297)
T ss_dssp SCEEEEEESSTTSCCEEEESSSSCCS--------------------------------------SCEEEEEECSSSCCEE
T ss_pred CcEEEEEeCCCCCccceeeeecccCC--------------------------------------CcEEEEEECCCCCEEE
Confidence 999999998753 22333 2343 2899999999999999
Q ss_pred EecCCCcEEEcc
Q 011452 473 TGNRHGLVHVWS 484 (485)
Q Consensus 473 Sgs~DgtVklWd 484 (485)
+|+.|++|+||+
T Consensus 271 s~~~D~~v~lw~ 282 (297)
T 2pm7_B 271 LSGGDNKVTLWK 282 (297)
T ss_dssp EEETTSCEEEEE
T ss_pred EEcCCCcEEEEE
Confidence 999999999997
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=332.26 Aligned_cols=285 Identities=10% Similarity=0.052 Sum_probs=238.9
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccCc------EEEEeecCCcccEEEEEEeeC----C---CEEEEEEeecCC
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQ------RICFLNVTADEVIRSLFYNKN----N---DSLITVSVYASD 160 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~------~l~tl~g~~~~~i~sv~~spd----g---~~Las~S~d~~~ 160 (485)
|..+|.+|.|+.++||+++.||+|++|+..+++ ++.++.+ |...|.+++|+|+ | +.|++++.
T Consensus 15 h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~g~~~~~l~s~~~---- 89 (397)
T 1sq9_A 15 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTSF---- 89 (397)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEET----
T ss_pred hhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEec-CCCcEEEEEEecccccCCccccEEEEEcC----
Confidence 666777777777899999999999999999988 7888886 8889999999999 9 99999774
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeee-cc-----ccCceEEEEeC---CCCeE-EEEeeCCCcEEEeecCC------
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFES-ES-----LKWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------ 224 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~-----~~~~~~V~Fs~---pnG~~-Las~s~D~tiKlWdl~~------ 224 (485)
| +++++|++..++......+... .+ ...+..++|++ |+|++ |++++.|++|++||+.+
T Consensus 90 d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 90 S------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp T------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred C------CCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 3 5899999988874110001111 12 25577899972 58999 99999999999999998
Q ss_pred CeEEE-----EE---------cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec---C---CcceeEEE
Q 011452 225 YTMLY-----SI---------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH---L---LHRNKKVD 284 (485)
Q Consensus 225 g~~l~-----tl---------~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~---~---~~~~~~V~ 284 (485)
++++. ++ +...|.+++|+|++ ++++++ .|++|++||+.+++++.++.. | ...+..++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~ 240 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 240 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceEE
Confidence 66554 55 35689999999977 665544 458999999999999999998 8 88999999
Q ss_pred EEecCCCEEEEEeCC---CcEEEEECCCCeeEEeccc-------------CCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 285 FIEQFNEKLLVKQEN---ENLQILDVRNFELTEVSRT-------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 285 f~~~~~~~lls~s~D---~tIkIWDv~tg~~~~~l~g-------------h~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
|+ |++..|++++.| ++|+|||+++++++..+.+ |...|.+++|+|++++|++++ |++|+|||
T Consensus 241 ~~-~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 241 FS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EC-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EC-CCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 97 678899999999 9999999999999999998 999999999999999999999 99999999
Q ss_pred CC-CcEEEEee------cC---------------CCCCCCCCeeEEEECCCC----------CEEEEEecCCCCCCCCcC
Q 011452 348 FR-GELVTSFE------DH---------------LLWHPDCNTNNIYITSDQ----------DLIISYCKADSDDPLAEG 395 (485)
Q Consensus 348 ~~-G~ll~tl~------gH---------------~~~~~~~~v~svafSpDG----------~~LaS~s~d~~~d~~~~~ 395 (485)
++ ++++.++. +| ... |++++|+||| ++|++++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----v~~~~~~~~g~~~~~~~~~~~~l~s~~~---------- 384 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-----VFDVKFLKKGWRSGMGADLNESLCCVCL---------- 384 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC-----EEEEEEECTTTSBSTTCTTSCEEEEEET----------
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCc-----eeEEEeccccccccccccccceEEEecC----------
Confidence 96 99999999 87 655 9999999999 79999987
Q ss_pred CCCeEEEEeCCCCe
Q 011452 396 NAGSINISNILTGK 409 (485)
Q Consensus 396 ~DgtIklWdl~TGk 409 (485)
||+|+|||+.+|+
T Consensus 385 -dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 385 -DRSIRWFREAGGK 397 (397)
T ss_dssp -TTEEEEEEEEC--
T ss_pred -CCcEEEEEcCCCC
Confidence 7999999998875
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=326.96 Aligned_cols=305 Identities=12% Similarity=0.057 Sum_probs=234.0
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
|.+.|.+++|+|+|+.||+++. + ++++||++..+++.. ...+. .+...+..++|+ |+|++|++++.|
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~----d------~~v~i~~~~~~~~~~-~~~~~-~h~~~v~~~~~~-~~~~~l~~~~~d 73 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPN----N------HEVHIYEKSGNKWVQ-VHELK-EHNGQVTGVDWA-PDSNRIVTCGTD 73 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECS----S------SEEEEEEEETTEEEE-EEEEE-CCSSCEEEEEEE-TTTTEEEEEETT
T ss_pred cCCCeEEEEECCCCCEEEEEeC----C------CEEEEEeCCCCcEEe-eeeec-CCCCcccEEEEe-CCCCEEEEEcCC
Confidence 7788999999999999998653 4 599999998875211 11232 244567789998 799999999999
Q ss_pred CcEEEeecCCCeEEEEE----cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe---EEEEe-ecCCcceeEEEEE
Q 011452 215 SIYKVFDLKNYTMLYSI----SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT---VLKSF-NHLLHRNKKVDFI 286 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl----~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~---~L~tl-~~~~~~~~~V~f~ 286 (485)
++|+|||+.++++...+ +...|.+++|+|++.++++++ .|++|++||+++++ ++..+ .+|...+..++|+
T Consensus 74 g~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 151 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 151 (372)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEc
Confidence 99999999999865544 346899999998666665554 34899999999987 34444 5778889999997
Q ss_pred ecCCCEEEEEeCCCcEEEEEC------------------CCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 287 EQFNEKLLVKQENENLQILDV------------------RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv------------------~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
|++..+++++.|++|+|||+ .+++++..+.+|...|.+++|+|++++|++++ |++|++||
T Consensus 152 -~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d 230 (372)
T 1k8k_C 152 -PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 230 (372)
T ss_dssp -TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred -CCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 67888999999999999995 47899999999999999999999999999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC--C--eEEEEecCCCCCCC
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT--G--KCLAKIRASNGLPA 422 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T--G--k~l~tl~gH~~~~~ 422 (485)
++ ++++.++.+|... |.+++|+|||++|+++ . |++|+|||+.+ | +++.++..+.....
T Consensus 231 ~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~~~-~-----------d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 293 (372)
T 1k8k_C 231 ADKKMAVATLASETLP-----LLAVTFITESSLVAAG-H-----------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 293 (372)
T ss_dssp GGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEE-T-----------TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred CCCCceeEEEccCCCC-----eEEEEEecCCCEEEEE-e-----------CCeEEEEEccCcCceEEEeeccCccccchh
Confidence 96 9999999999877 9999999999999988 4 69999999988 6 44444433321000
Q ss_pred C-------cccccCCCCCC-----CCccccccccccccccchhcccCCeEEEEE-cCCC---CEEEEecCCCcEEEccC
Q 011452 423 E-------NECSCSGDYSS-----GSCNVKKHSHASRIRSTVAEALEDITALFY-DEDR---NEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 423 ~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f-spDg---~~LaSgs~DgtVklWd~ 485 (485)
. ......+++.. ..+.. ..+...|++|+| ++|| +.|+||+.||+|+||++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~ 359 (372)
T 1k8k_C 294 RGLTARERFQNLDKKASSEGSAAAGAGLD-------------SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 359 (372)
T ss_dssp ---CHHHHHHHCCCCC---------CCCS-------------SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred hhcchhhhhhhcccccccccCcccccccc-------------ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEe
Confidence 0 00000000000 00000 012248999984 5887 99999999999999983
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-41 Score=337.76 Aligned_cols=287 Identities=12% Similarity=0.137 Sum_probs=219.0
Q ss_pred ceEEEEEe--cCEEEEEeCCC-------eEEeeecccCcEE----------EEeecCCcccEEEEEEeeCCCEEEEEEee
Q 011452 97 KIIEIVAA--RDIVFALAQSG-------VCAAFCRETNQRI----------CFLNVTADEVIRSLFYNKNNDSLITVSVY 157 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dg-------tiklW~~~tG~~l----------~tl~g~~~~~i~sv~~spdg~~Las~S~d 157 (485)
||++++|+ +++||+|+.|. .+++|++..+... .+|.+ |+..|.++++ +++.|+++..+
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~-~~~~v~s~~~--~~~~~~~g~~~ 92 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALED-NDDSPTAIDA--SKGIILVGCNE 92 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCT-TSCCCCEEEE--ETTEEEEECCC
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccC-CCCceEEEEe--CCCEEEEEECC
Confidence 56667766 89999997644 5999998765421 23555 6677888765 55677776532
Q ss_pred cCCCC-cccceeEEEEeEeccCCcCc----ccceeee-ccccCceEEEEeCCCCeEEE--EeeCCCcEEEeecCCCeEEE
Q 011452 158 ASDNF-SSLRCRSTRIEYIRRGKPDA----GFALFES-ESLKWPGFVEFDDVNGKVLT--YSAQDSIYKVFDLKNYTMLY 229 (485)
Q Consensus 158 ~~~d~-stL~~~t~~lw~i~~G~~~~----~~~lf~~-~~~~~~~~V~Fs~pnG~~La--s~s~D~tiKlWdl~~g~~l~ 229 (485)
+...+ +.-..+++++|++..++... ...+... ..-.++..|+|| |||++|| +++.|++|||||++++++++
T Consensus 93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fS-pDg~~la~as~~~d~~i~iwd~~~~~~~~ 171 (365)
T 4h5i_A 93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYIS-REGTVAAIASSKVPAIMRIIDPSDLTEKF 171 (365)
T ss_dssp CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEEC-TTSSCEEEEESCSSCEEEEEETTTTEEEE
T ss_pred CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEc-CCCCEEEEEECCCCCEEEEeECCCCcEEE
Confidence 21110 11112688999986554310 0001111 122346689998 8999875 55689999999999999999
Q ss_pred EEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE--eecCCcceeEEEEEecCCCEEEEEeCCC----cE
Q 011452 230 SIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS--FNHLLHRNKKVDFIEQFNEKLLVKQENE----NL 302 (485)
Q Consensus 230 tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t--l~~~~~~~~~V~f~~~~~~~lls~s~D~----tI 302 (485)
++. ...|.+|+|||++.+++++++ .++++|+..+|+.+.. +.+|...+.+|+|+ |++..+++++.|+ ++
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs-pdg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITG---SSLEVISTVTGSCIARKTDFDKNWSLSKINFI-ADDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECS---SCEEEEETTTCCEEEEECCCCTTEEEEEEEEE-ETTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccc---eeEEEEEeccCcceeeeecCCCCCCEEEEEEc-CCCCEEEEEecCCcceeEE
Confidence 885 568999999998888887654 4788888888888754 45677789999998 6788888888776 79
Q ss_pred EEEECCCCee----EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe-ecCCCCCCCCCeeEEEECC
Q 011452 303 QILDVRNFEL----TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF-EDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 303 kIWDv~tg~~----~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl-~gH~~~~~~~~v~svafSp 375 (485)
++||+..+.. ...+.+|...|++++|||||++||+++ |++|+|||++ |+++.++ ++|..+ |++|+|||
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~-----V~~v~fSp 322 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA-----ITEVTISP 322 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC-----EEEEEECT
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC-----EEEEEECC
Confidence 9999987764 456788999999999999999999999 9999999996 9999885 899988 99999999
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
||++|||+|. |+|||||||.+
T Consensus 323 dg~~laS~S~-----------D~tvrvw~ip~ 343 (365)
T 4h5i_A 323 DSTYVASVSA-----------ANTIHIIKLPL 343 (365)
T ss_dssp TSCEEEEEET-----------TSEEEEEECCT
T ss_pred CCCEEEEEeC-----------CCeEEEEEcCC
Confidence 9999999997 79999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=337.52 Aligned_cols=274 Identities=11% Similarity=0.119 Sum_probs=229.6
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
-++.|+||++| .||++. | ++|+||++.+|++. .+++. ++..++.+|+|+ |||++||+|+.|++
T Consensus 107 y~~~l~wS~~n-~lAvgl----d-------~tV~lWd~~tg~~~---~~~~~~~~~~~V~sv~fs-pdg~~lasgs~Dg~ 170 (420)
T 4gga_A 107 YLNLVDWSSGN-VLAVAL----D-------NSVYLWSASSGDIL---QLLQMEQPGEYISSVAWI-KEGNYLAVGTSSAE 170 (420)
T ss_dssp TCBCEEECTTS-EEEEEE----T-------TEEEEEETTTCCEE---EEEECCSTTCCEEEEEEC-TTSSEEEEEETTSC
T ss_pred cceeEEECCCC-EEEEEe----C-------CEEEEEECCCCCEE---EEEEecCCCCcEEEEEEC-CCCCEEEEEECCCe
Confidence 36679999875 676633 3 49999999999873 34543 355678899998 79999999999999
Q ss_pred EEEeecCCCeEEEEEcCC--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEE
Q 011452 217 YKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (485)
Q Consensus 217 iKlWdl~~g~~l~tl~~~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~l 293 (485)
|+|||+.+++++.++.++ .|.++++++ .++++++ .|+++++||... ...+.++.+|...+..+.|. +++..+
T Consensus 171 v~iWd~~~~~~~~~~~~h~~~v~~~s~~~--~~l~sgs--~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~-~~g~~l 245 (420)
T 4gga_A 171 VQLWDVQQQKRLRNMTSHSARVGSLSWNS--YILSSGS--RSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA-PDGRHL 245 (420)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEET--TEEEEEE--TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEE
T ss_pred EEEEEcCCCcEEEEEeCCCCceEEEeeCC--CEEEEEe--CCCceeEeeecccceeeEEecccccceeeeeec-CCCCee
Confidence 999999999999998754 677666653 3444544 458999999876 45678899999999999986 778899
Q ss_pred EEEeCCCcEEEEECCCCe----eEEecccCCCceEEEEEcCCC-cEEEE--Ee-CCcEEEEeCC-CcEEEEeecCCCCCC
Q 011452 294 LVKQENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYEN-QLFLT--FR-NRTVAVWNFR-GELVTSFEDHLLWHP 364 (485)
Q Consensus 294 ls~s~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspdg-~llaS--~s-D~TIklWd~~-G~ll~tl~gH~~~~~ 364 (485)
++++.|++|+|||+.+++ .+.....|...|.+++|+|++ .++++ ++ |++|+|||++ |+++..+..|..
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~--- 322 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ--- 322 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC---
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc---
Confidence 999999999999999876 356677899999999999965 45554 45 9999999996 999999987752
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
+.++.|+|+++.|++++. +.|++|+|||+.+++++++|.||++
T Consensus 323 ---v~~~~~~~~~~~lv~~sg---------~~d~~I~iwd~~~~~~v~~l~gH~~------------------------- 365 (420)
T 4gga_A 323 ---VCSILWSPHYKELISGHG---------FAQNQLVIWKYPTMAKVAELKGHTS------------------------- 365 (420)
T ss_dssp ---EEEEEEETTTTEEEEEEC---------TTTCCEEEEETTTCCEEEEECCCSS-------------------------
T ss_pred ---eeeeeecCCCCeEEEEEe---------cCCCEEEEEECCCCcEEEEEcCCCC-------------------------
Confidence 789999999999999873 2489999999999999999999983
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+|||++|||||.|++|||||+
T Consensus 366 -------------~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 366 -------------RVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp -------------CEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred -------------CEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 8999999999999999999999999984
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-40 Score=319.59 Aligned_cols=286 Identities=11% Similarity=0.084 Sum_probs=244.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|..+|..++|+ +++||+++.||++++||..+++.+.++.+ |...|.+++|+|+|+.|++++. | ++++
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~----d------g~i~ 99 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGSA----D------YSIK 99 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------TEEE
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEeC----C------CeEE
Confidence 56666666666 89999999999999999999999999987 8889999999999999999774 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC-----CcEEEeecCCCeE-----------EEEE--cC
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTM-----------LYSI--SD 233 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-----~tiKlWdl~~g~~-----------l~tl--~~ 233 (485)
||++.+|++.. .+. +...+..++|+ |+|++|++++.| ++|++||+.++.. +..+ +.
T Consensus 100 iwd~~~~~~~~---~~~--~~~~v~~~~~~-~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 100 LWDVSNGQCVA---TWK--SPVPVKRVEFS-PCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp EEETTTCCEEE---EEE--CSSCEEEEEEC-TTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred EEECCCCcEEE---Eee--cCCCeEEEEEc-cCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 99999888732 333 33456789998 799999999999 9999999976542 1122 12
Q ss_pred C--cEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC
Q 011452 234 K--NVQEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 234 ~--~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg 310 (485)
. .|.+++|+|++.++++++ .|++|++||+.+ ++++.++..|...+..++|+ |++..|++++.|++|++||++++
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS-PDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTC
T ss_pred CccceeEEEEcCCCCEEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEEC-CCCCEEEEecCCceEEEEECCCC
Confidence 2 899999999776666654 348999999999 89999999999999999997 67889999999999999999999
Q ss_pred eeEEecccCCCceEEEEEcCCCcEEEEEe-CC--------------cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEEC
Q 011452 311 ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR--------------TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 311 ~~~~~l~gh~~~v~avaFspdg~llaS~s-D~--------------TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafS 374 (485)
+++..+. +...+.+++|+|+++++++++ ++ +|++||.. ++++.++.+|... |.+++|+
T Consensus 251 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----v~~~~~s 324 (369)
T 3zwl_B 251 QVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGP-----LNTVAIS 324 (369)
T ss_dssp CEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSC-----EEEEEEC
T ss_pred ceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCc-----EEEEEEC
Confidence 9999886 677999999999999999999 77 89999996 9999999999877 9999999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
|||++|++++. ||+|+|||+.++.....+..
T Consensus 325 ~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~ 355 (369)
T 3zwl_B 325 PQGTSYASGGE-----------DGFIRLHHFEKSYFDFKYDV 355 (369)
T ss_dssp TTSSEEEEEET-----------TSEEEEEEECHHHHTCCCHH
T ss_pred CCCCEEEEEcC-----------CCeEEEEECccccchhHHHH
Confidence 99999999997 79999999988776555443
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=337.97 Aligned_cols=273 Identities=10% Similarity=0.099 Sum_probs=227.7
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiK 218 (485)
+.+++|+|+|+.|++++.+ +++++|++..++... .+.. + ..+....|+ ++|++||+++.|++|+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d----------~~v~i~d~~~~~~~~---~~~~-~-~~~~~~~~~-~~~~~l~~~~~dg~i~ 122 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLD----------GHDFLFNTIIRDGSK---MLKR-A-DYTAVDTAK-LQMRRFILGTTEGDIK 122 (420)
T ss_dssp CTTCEEEEEETTEEEEEET----------TEEEEEECCSEETTT---TSCS-C-CEEEEEEEC-SSSCEEEEEETTSCEE
T ss_pred ccceeeeecCCeEEEEEcC----------CcEEEEEecccceee---EEec-C-CceEEEEEe-cCCCEEEEEECCCCEE
Confidence 4579999999999998853 499999997776532 2222 1 222234665 8999999999999999
Q ss_pred EeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 219 VFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 219 lWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
|||+.+++++..+. ...|.+++|+|++.++++++. |++|+|||+++|+++.++.+|...+..++|+ |++..|+++
T Consensus 123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~s~ 199 (420)
T 3vl1_A 123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ--DMQLKIWSVKDGSNPRTLIGHRATVTDIAII-DRGRNVLSA 199 (420)
T ss_dssp EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET--TSEEEEEETTTCCCCEEEECCSSCEEEEEEE-TTTTEEEEE
T ss_pred EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC--CCeEEEEeCCCCcCceEEcCCCCcEEEEEEc-CCCCEEEEE
Confidence 99999999988874 468999999997766666554 5899999999999999999999999999997 678899999
Q ss_pred eCCCcEEEEECCCCeeEEeccc---CCCceEEE---------------------EEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 297 QENENLQILDVRNFELTEVSRT---EFMTPSAF---------------------IFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~~~~l~g---h~~~v~av---------------------aFspdg~llaS~s-D~TIklWd~~-G 350 (485)
+.|++|+|||+++++++..+.. |...+.++ +|+|+|++|++++ |++|++||++ +
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~ 279 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK 279 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC
T ss_pred cCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC
Confidence 9999999999999999998875 33444444 4579999999999 9999999996 8
Q ss_pred cEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE-EEEecCCCCCCCCcccc
Q 011452 351 ELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKC-LAKIRASNGLPAENECS 427 (485)
Q Consensus 351 ~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~-l~tl~gH~~~~~~~~~~ 427 (485)
+.+..+. +|... |.+++|+|+|+ +|++++. ||+|+|||+.++++ +.++.+|..
T Consensus 280 ~~~~~~~~~~~~~-----v~~~~~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~~~~~~~~~~-------- 335 (420)
T 3vl1_A 280 EQTIQLPSKFTCS-----CNSLTVDGNNANYIYAGYE-----------NGMLAQWDLRSPECPVGEFLINEG-------- 335 (420)
T ss_dssp CEEEEECCTTSSC-----EEEEEECSSCTTEEEEEET-----------TSEEEEEETTCTTSCSEEEEESTT--------
T ss_pred ceeEEcccccCCC-----ceeEEEeCCCCCEEEEEeC-----------CCeEEEEEcCCCcCchhhhhccCC--------
Confidence 8777665 46666 99999999999 9999987 79999999999865 888988652
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
..|++++| |+++.|+||+.|++|+||+
T Consensus 336 -----------------------------~~v~~~~~-~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 336 -----------------------------TPINNVYF-AAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp -----------------------------SCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred -----------------------------CCceEEEe-CCCCEEEEecCCccEEEEe
Confidence 27888855 5889999999999999998
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=331.49 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=224.4
Q ss_pred cccceEEEEEe--c-CEEEEEeCCCeEEeeecccCcEEEEeec-CCcccEEEEEEee-CCCEEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA--R-DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s--~-~~ias~s~dgtiklW~~~tG~~l~tl~g-~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~ 168 (485)
+..+|.+|.|+ + ++||+++.||+|++||..+++..+.+.. +|...|.+++|+| +++.|++++. | +
T Consensus 72 h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~----d------~ 141 (383)
T 3ei3_B 72 FDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI----R------G 141 (383)
T ss_dssp CSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET----T------T
T ss_pred CCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC----C------C
Confidence 34455555555 6 7999999999999999999998887763 4888999999999 7899998774 3 5
Q ss_pred EEEEeEeccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg 244 (485)
+++||++..+.+ ..+.. .+...+..++|+ |+|++|++++.|++|++||+ +++++.++. ...|.+|+|+|+
T Consensus 142 ~i~iwd~~~~~~----~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 142 ATTLRDFSGSVI----QVFAKTDSWDYWYCCVDVS-VSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EEEEEETTSCEE----EEEECCCCSSCCEEEEEEE-TTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred EEEEEECCCCce----EEEeccCCCCCCeEEEEEC-CCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 999999864322 22222 122456789998 79999999999999999999 677887775 468999999997
Q ss_pred ce-EEEEEcCCCCeeEEEEecCC----CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC
Q 011452 245 IM-LLIFTKASGHVPLKILSIED----GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE 319 (485)
Q Consensus 245 ~~-ll~sss~~~D~tIklWdi~t----G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh 319 (485)
+. ++++++ .|++|+|||+.+ ++++.++ +|...+.+++|++.++..|++++.|++|+|||+++++++..+.+|
T Consensus 216 ~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 292 (383)
T 3ei3_B 216 CDWLMATSS--VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIH 292 (383)
T ss_dssp CTTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEEC
T ss_pred CCCEEEEEe--CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccc
Confidence 65 555544 358999999998 8888888 588999999997328889999999999999999999887777766
Q ss_pred C-----------------CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 320 F-----------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 320 ~-----------------~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
. ..+.+++|+|||++ +++ |++|+|||+. |+++.+|.+|... ..+..++|+|||++|
T Consensus 293 ~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~---~~~~~~~~s~~g~~l 367 (383)
T 3ei3_B 293 PHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAA---GIISLNKFSPTGDVL 367 (383)
T ss_dssp CBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBC---SCCCEEEECTTSSEE
T ss_pred cccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCC---ceEEEEEEecCccEE
Confidence 4 34455788888887 777 9999999995 9999999985421 227778999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
|+++ |++|+|||+.+
T Consensus 368 ~s~s------------d~~i~iw~~~~ 382 (383)
T 3ei3_B 368 ASGM------------GFNILIWNRED 382 (383)
T ss_dssp EEEE------------TTEEEEEECC-
T ss_pred EEec------------CCcEEEEecCC
Confidence 9996 59999999864
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-40 Score=355.03 Aligned_cols=281 Identities=11% Similarity=0.109 Sum_probs=230.6
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeeccc-----CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRET-----NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t-----G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL 165 (485)
|...|..|.++ +++||++|.||+|++|++.+ +.+.+.+.+ |...|.+|+|+|+|+.|+++|. |
T Consensus 381 H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~-h~~~v~~v~~s~~g~~l~sgs~----D---- 451 (694)
T 3dm0_A 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG-HSHFVEDVVLSSDGQFALSGSW----D---- 451 (694)
T ss_dssp CSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEEC-CSSCEEEEEECTTSSEEEEEET----T----
T ss_pred CCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecC-CCCcEEEEEECCCCCEEEEEeC----C----
Confidence 56666666666 47999999999999999875 345667777 8889999999999999999774 4
Q ss_pred ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE------cCCcEEEE
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------SDKNVQEI 239 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl------~~~~V~~V 239 (485)
++++|||+.+|+.. ..+. .|...+.+|+|+ |+|+.|++++.|++|||||+... +..++ |...|.++
T Consensus 452 --g~v~vwd~~~~~~~---~~~~-~h~~~v~~~~~s-~~~~~l~s~s~D~~i~iwd~~~~-~~~~~~~~~~~h~~~v~~~ 523 (694)
T 3dm0_A 452 --GELRLWDLAAGVST---RRFV-GHTKDVLSVAFS-LDNRQIVSASRDRTIKLWNTLGE-CKYTISEGGEGHRDWVSCV 523 (694)
T ss_dssp --SEEEEEETTTTEEE---EEEE-CCSSCEEEEEEC-TTSSCEEEEETTSCEEEECTTSC-EEEEECSSTTSCSSCEEEE
T ss_pred --CcEEEEECCCCcce---eEEe-CCCCCEEEEEEe-CCCCEEEEEeCCCEEEEEECCCC-cceeeccCCCCCCCcEEEE
Confidence 59999999888762 2232 355667799998 79999999999999999998654 44444 23479999
Q ss_pred EEcCCc--eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc
Q 011452 240 KISPGI--MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 240 afSpg~--~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~ 317 (485)
+|+|++ .++++++ .|++|+|||+.+++++.++.+|.+.+.+|+|+ |++..|++++.|++|+|||+++++++..+.
T Consensus 524 ~~~~~~~~~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s-pdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~ 600 (694)
T 3dm0_A 524 RFSPNTLQPTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS-PDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600 (694)
T ss_dssp EECSCSSSCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSBCEEEETTTTEEEECCB
T ss_pred EEeCCCCcceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe-CCCCEEEEEeCCCeEEEEECCCCceEEEec
Confidence 999864 3444444 45899999999999999999999999999997 788899999999999999999999998886
Q ss_pred cCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCC--------------CCCCeeEEEECCCCCEEEE
Q 011452 318 TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWH--------------PDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 318 gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~--------------~~~~v~svafSpDG~~LaS 382 (485)
.+ ..|.+++|+|++.+|++++|+.|+|||++ ++++.++..|.... ....+.+++|||||++|+|
T Consensus 601 ~~-~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s 679 (694)
T 3dm0_A 601 AN-SVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS 679 (694)
T ss_dssp CS-SCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE
T ss_pred CC-CcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE
Confidence 55 57999999999999998888899999996 88998887543210 0012689999999999999
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCC
Q 011452 383 YCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|+. ||+|+|||+.
T Consensus 680 gs~-----------Dg~i~iW~i~ 692 (694)
T 3dm0_A 680 GYT-----------DGVIRVWGIG 692 (694)
T ss_dssp EET-----------TSEEEEEEC-
T ss_pred EcC-----------CCeEEEEecc
Confidence 997 7999999974
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=309.98 Aligned_cols=293 Identities=11% Similarity=0.137 Sum_probs=235.2
Q ss_pred hhccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeC
Q 011452 68 RNIRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN 147 (485)
Q Consensus 68 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd 147 (485)
..+++...|..|..++.++.+ |. +++||+++.||++++||..+++.+..+.. |...|.+++|+|+
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-------------~~~l~s~~~dg~v~vw~~~~~~~~~~~~~-~~~~v~~~~~~~~ 70 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-------------DSKVASVSRDGTVRLWSKDDQWLGTVVYT-GQGFLNSVCYDSE 70 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-------------TTEEEEEETTSEEEEEEESSSEEEEEEEE-CSSCEEEEEEETT
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-------------CCEEEEEEcCCcEEEEECCCCEEEEEeec-CCccEEEEEECCC
Confidence 345555566666555555554 44 89999999999999999999999988887 7889999999999
Q ss_pred CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE
Q 011452 148 NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 227 (485)
Q Consensus 148 g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~ 227 (485)
|+.|++++. | +.+++|++...........+. .+...+..++|+ +.+|++++.|++|++|| .++.
T Consensus 71 ~~~l~~~~~----d------g~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~---~~~l~~~~~d~~i~~~d--~~~~ 134 (313)
T 3odt_A 71 KELLLFGGK----D------TMINGVPLFATSGEDPLYTLI-GHQGNVCSLSFQ---DGVVISGSWDKTAKVWK--EGSL 134 (313)
T ss_dssp TTEEEEEET----T------SCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEE--TTEE
T ss_pred CCEEEEecC----C------CeEEEEEeeecCCCCcccchh-hcccCEEEEEec---CCEEEEEeCCCCEEEEc--CCcE
Confidence 999999774 3 488999986553211112222 244556678884 67899999999999999 6677
Q ss_pred EEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeec-CCcceeEEEEEecCCCEEEEEeCCCcEE
Q 011452 228 LYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (485)
Q Consensus 228 l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-~~~~~~~V~f~~~~~~~lls~s~D~tIk 303 (485)
+..+. ...|.+++|+| ++.++++++ .|++|++|| .++.+.++.. |...+..++|++ + +.+++++.|++|+
T Consensus 135 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~dg~i~ 208 (313)
T 3odt_A 135 VYNLQAHNASVWDAKVVSFSENKFLTAS--ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVD-D-GHFISCSNDGLIK 208 (313)
T ss_dssp EEEEECCSSCEEEEEEEETTTTEEEEEE--TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEE-T-TEEEEEETTSEEE
T ss_pred EEecccCCCceeEEEEccCCCCEEEEEE--CCCCEEEEe--cCceEEEEeccCcccEEEEEEcC-C-CeEEEccCCCeEE
Confidence 76664 56899999996 554455544 348999999 6788999987 888899999974 3 4588899999999
Q ss_pred EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 304 ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
|||+++++++..+.+|...|.+++|+|+++ |++++ |++|++||++ ++++.++..|... |.+++|+|||+++
T Consensus 209 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~- 281 (313)
T 3odt_A 209 LVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IVSCGEDRTVRIWSKENGSLKQVITLPAIS-----IWSVDCMSNGDII- 281 (313)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECTTSC-EEEEETTSEEEEECTTTCCEEEEEECSSSC-----EEEEEECTTSCEE-
T ss_pred EEECCchhhhhhhhcCCceEEEEEEecCCC-EEEEecCCEEEEEECCCCceeEEEeccCce-----EEEEEEccCCCEE-
Confidence 999999999999999999999999999995 77777 9999999996 9999999999876 9999999999955
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+++. ||+|+|||+.+++++....
T Consensus 282 ~~~~-----------dg~i~iw~~~~~~~~~~~~ 304 (313)
T 3odt_A 282 VGSS-----------DNLVRIFSQEKSRWASEDE 304 (313)
T ss_dssp EEET-----------TSCEEEEESCGGGCCC---
T ss_pred EEeC-----------CCcEEEEeCCCCceeehhh
Confidence 5665 7999999999988766554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=341.56 Aligned_cols=271 Identities=14% Similarity=0.140 Sum_probs=214.0
Q ss_pred cCEEEEEeCCCeEEeeecccC---cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 105 RDIVFALAQSGVCAAFCRETN---QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG---~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
++.-+..+...+++||+...+ +++.++.+ |..+|..|+|+||---|+.+. -|++
T Consensus 53 ~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~---------------------~~~~- 109 (356)
T 2w18_A 53 KEPCIITACEDVVSLWKALDAWQWEKLYTWHF-AEVPVLQIVPVPDVYNLVCVA---------------------LGNL- 109 (356)
T ss_dssp CEEEEEEEESSEEEEEEESSSSBEEEEEEEEC-CSSCEEEECCCTTCCSCEEEE---------------------ECSS-
T ss_pred CccEEEEeccceEEEcccCCCccceeeEEEec-cCceeEEEEEcCcccceeeee---------------------eccc-
Confidence 555555566779999999999 89999998 888999999999987776643 3544
Q ss_pred cccceeeeccccCceEEEEeCCC----CeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCe
Q 011452 182 AGFALFESESLKWPGFVEFDDVN----GKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHV 257 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~~V~Fs~pn----G~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~ 257 (485)
+...+.+|+|+ || ++++++++++ ++||++.+|++ +.++....|+
T Consensus 110 ---------~~~~v~sla~s-pd~~~~~~~l~s~g~~--~~v~~l~~g~l--------------------v~ss~~g~d~ 157 (356)
T 2w18_A 110 ---------EIREIRALFCS-SDDESEKQVLLKSGNI--KAVLGLTKRRL--------------------VSSSGTLSDQ 157 (356)
T ss_dssp ---------SEEEEEEECC-------CCEEEEEEEEE--EEEEEETTTEE--------------------EEEESSSTTC
T ss_pred ---------cccceEEEEEC-CCccccccEEEeCCCe--EEEEecCCCcE--------------------EEecccCCCC
Confidence 13456689998 79 9999998844 88998755544 4443333568
Q ss_pred eEEEEec-CCCeEEEEeecCCcceeEEEEEe-c-CCCEEEEEeCCCcEEEEECCCCeeEEecccCC---CceEEEEEcCC
Q 011452 258 PLKILSI-EDGTVLKSFNHLLHRNKKVDFIE-Q-FNEKLLVKQENENLQILDVRNFELTEVSRTEF---MTPSAFIFLYE 331 (485)
Q Consensus 258 tIklWdi-~tG~~L~tl~~~~~~~~~V~f~~-~-~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~---~~v~avaFspd 331 (485)
+|++|++ ++|+.+.++.+|.+.+..++|++ + +++.|++++.|+||||||+++|++++++.+|. ..+.+++|+||
T Consensus 158 ~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpd 237 (356)
T 2w18_A 158 QVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEM 237 (356)
T ss_dssp EEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEET
T ss_pred cEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCC
Confidence 9999998 66999999999999999999986 2 45778888999999999999999999998754 36778899999
Q ss_pred CcEE------------EEEe-CCcEEEEeCC-CcEEEEe-----ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 332 NQLF------------LTFR-NRTVAVWNFR-GELVTSF-----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 332 g~ll------------aS~s-D~TIklWd~~-G~ll~tl-----~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
|+++ +|++ |+|||+||.. |+++.++ +||... +.+..+ +|.++||++.
T Consensus 238 G~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~-----~lsg~~--sg~~lASgS~------- 303 (356)
T 2w18_A 238 GLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGR-----FLEGDV--KDHCAAAILT------- 303 (356)
T ss_dssp TEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCC-----EEEEEE--ETTEEEEEET-------
T ss_pred CCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcce-----eEcccc--CCCEEEEEcC-------
Confidence 9987 6678 9999999996 9988877 477644 444444 4899999987
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
|+||||||+.+|+|+++|++|.+ ..+.+|+|||||++||
T Consensus 304 ----DgTIkIWDl~tGk~l~tL~gH~~-------------------------------------~vvs~vafSPDG~~La 342 (356)
T 2w18_A 304 ----SGTIAIWDLLLGQCTALLPPVSD-------------------------------------QHWSFVKWSGTDSHLL 342 (356)
T ss_dssp ----TSCEEEEETTTCSEEEEECCC---------------------------------------CCCCEEEECSSSSEEE
T ss_pred ----CCcEEEEECCCCcEEEEecCCCC-------------------------------------CeEEEEEECCCCCEEE
Confidence 79999999999999999999973 1345699999999999
Q ss_pred EecCCCcEEEccC
Q 011452 473 TGNRHGLVHVWSN 485 (485)
Q Consensus 473 Sgs~DgtVklWd~ 485 (485)
|||.|++|||||.
T Consensus 343 SGS~D~TIklWd~ 355 (356)
T 2w18_A 343 AGQKDGNIFVYHY 355 (356)
T ss_dssp EECTTSCEEEEEE
T ss_pred EEECCCcEEEecC
Confidence 9999999999983
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=321.97 Aligned_cols=279 Identities=13% Similarity=0.112 Sum_probs=231.2
Q ss_pred cccceEEEEEe------cCEEEEEeCCCeEEeeecccCcEEEEeecC----CcccEEEEEEeeC----CCEEEEEEeecC
Q 011452 94 KRSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKN----NDSLITVSVYAS 159 (485)
Q Consensus 94 ~~s~V~~i~~s------~~~ias~s~dgtiklW~~~tG~~l~tl~g~----~~~~i~sv~~spd----g~~Las~S~d~~ 159 (485)
|..+|..|+|+ ...+++++.++.+++|+..+++.+..+... |...|.+++|+|+ |+.|++++.
T Consensus 17 h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~--- 93 (366)
T 3k26_A 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS--- 93 (366)
T ss_dssp TCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET---
T ss_pred CCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC---
Confidence 45556666665 456777777889999999999988877652 4567999999999 668988773
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-----cCC
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SDK 234 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-----~~~ 234 (485)
| ++++||++.++++.. .+. .+...+..++|++.++++|++++.|++|+|||+.+++++..+ +..
T Consensus 94 -d------g~i~v~d~~~~~~~~---~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 162 (366)
T 3k26_A 94 -R------GIIRIINPITMQCIK---HYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRD 162 (366)
T ss_dssp -T------CEEEEECTTTCCEEE---EEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSS
T ss_pred -C------CEEEEEEchhceEee---eec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccC
Confidence 4 599999998888622 233 245667789998339999999999999999999999999888 346
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec----------------------------CCcceeEEEEE
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH----------------------------LLHRNKKVDFI 286 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~----------------------------~~~~~~~V~f~ 286 (485)
.|.+++|+|++.++++++. |++|++||+.+++++..+.. |...+..|+|+
T Consensus 163 ~v~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 240 (366)
T 3k26_A 163 EVLSADYDLLGEKIMSCGM--DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL 240 (366)
T ss_dssp CEEEEEECTTSSEEEEEET--TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE
T ss_pred ceeEEEECCCCCEEEEecC--CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc
Confidence 8999999997666666543 58999999999887765554 88899999997
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCee--------------EEecccCCCceEEEEEcCC--CcEEEEEe-CCcEEEEeCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFEL--------------TEVSRTEFMTPSAFIFLYE--NQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~--------------~~~l~gh~~~v~avaFspd--g~llaS~s-D~TIklWd~~ 349 (485)
++.+++++.|++|++||+.++++ +..+.+|...|++++|+|+ +++|++++ |++|++||++
T Consensus 241 ---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 241 ---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE 317 (366)
T ss_dssp ---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred ---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence 67899999999999999998754 8888899999999999999 99999999 9999999996
Q ss_pred -Cc----EEEEeecC--CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 350 -GE----LVTSFEDH--LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 350 -G~----ll~tl~gH--~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
++ .+.++.+| ... |++++|+|||++||+++. ||+|+|||+.+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~s~~~-----------dg~i~iwd~~~ 366 (366)
T 3k26_A 318 VEDPHKAKCTTLTHHKCGAA-----IRQTSFSRDSSILIAVCD-----------DASIWRWDRLR 366 (366)
T ss_dssp SSSGGGCEEEEECCTTCCSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEEC--
T ss_pred CCCCccccceEEcccccCCc-----eEEEEeCCCCCeEEEEeC-----------CCEEEEEEecC
Confidence 65 56689988 445 999999999999999997 79999999864
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=333.14 Aligned_cols=237 Identities=13% Similarity=0.145 Sum_probs=198.7
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcC---CceEEEEEcCCCCeeEEEE
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSp---g~~ll~sss~~~D~tIklW 262 (485)
+|...+..|+|+ |+|++||+|+.|++|||||+.+++ ++.++. ...|++|+|+| +..++ +++ .|++|+||
T Consensus 11 ~H~~~V~~v~~s-~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~-s~s--~D~~v~iW 86 (316)
T 3bg1_A 11 SHEDMIHDAQMD-YYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILA-SCS--YDRKVIIW 86 (316)
T ss_dssp ---CCEEEEEEC-GGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEE-EEE--TTSCEEEE
T ss_pred cccCeEEEeeEc-CCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEE-EEE--CCCEEEEE
Confidence 355677899998 799999999999999999999875 466775 45899999985 44554 444 45899999
Q ss_pred ecCCC--eEEEEeecCCcceeEEEEEecC-CCEEEEEeCCCcEEEEECCCCe---eEEecccCCCceEEEEEcCC-----
Q 011452 263 SIEDG--TVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRNFE---LTEVSRTEFMTPSAFIFLYE----- 331 (485)
Q Consensus 263 di~tG--~~L~tl~~~~~~~~~V~f~~~~-~~~lls~s~D~tIkIWDv~tg~---~~~~l~gh~~~v~avaFspd----- 331 (485)
|+++| +++.++.+|...+.+|+|++.. +..|++++.|++|+|||++++. +...+.+|...|.+++|+|+
T Consensus 87 d~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~ 166 (316)
T 3bg1_A 87 REENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166 (316)
T ss_dssp CCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC--
T ss_pred ECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCcc
Confidence 99998 4778899999999999997432 5678888999999999999763 35667899999999999998
Q ss_pred ------------CcEEEEEe-CCcEEEEeCC-C---cEEEEeecCCCCCCCCCeeEEEECCCC----CEEEEEecCCCCC
Q 011452 332 ------------NQLFLTFR-NRTVAVWNFR-G---ELVTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKADSDD 390 (485)
Q Consensus 332 ------------g~llaS~s-D~TIklWd~~-G---~ll~tl~gH~~~~~~~~v~svafSpDG----~~LaS~s~d~~~d 390 (485)
+++|||++ |++|+|||++ + +++.+|++|..+ |++|+|+|++ ++|||++.
T Consensus 167 ~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~-----V~~v~~sp~~~~~~~~las~s~----- 236 (316)
T 3bg1_A 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW-----VRDVAWAPSIGLPTSTIASCSQ----- 236 (316)
T ss_dssp ----CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC-----EEEEECCCCSSCSCCEEEEEET-----
T ss_pred ccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc-----eEEEEecCCCCCCCceEEEEcC-----
Confidence 57899999 9999999996 4 478899999988 9999999997 89999997
Q ss_pred CCCcCCCCeEEEEeCCCC---e-EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC
Q 011452 391 PLAEGNAGSINISNILTG---K-CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE 466 (485)
Q Consensus 391 ~~~~~~DgtIklWdl~TG---k-~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp 466 (485)
|++|+|||+.++ + +...+.+|. ..|++|+|+|
T Consensus 237 ------D~~v~iw~~~~~~~~~~~~~~~~~~~--------------------------------------~~v~~v~~sp 272 (316)
T 3bg1_A 237 ------DGRVFIWTCDDASSNTWSPKLLHKFN--------------------------------------DVVWHVSWSI 272 (316)
T ss_dssp ------TCEEEEEECSSTTCCCCBCCEEEECS--------------------------------------SCEEEEEECT
T ss_pred ------CCeEEEEEccCccccchhhhhhhcCC--------------------------------------CcEEEEEEcC
Confidence 799999999763 2 233455665 2899999999
Q ss_pred CCCEEEEecCCCcEEEcc
Q 011452 467 DRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 467 Dg~~LaSgs~DgtVklWd 484 (485)
||+.||||+.|++|+||+
T Consensus 273 ~g~~las~~~D~~v~lw~ 290 (316)
T 3bg1_A 273 TANILAVSGGDNKVTLWK 290 (316)
T ss_dssp TTCCEEEEESSSCEEEEE
T ss_pred CCCEEEEEcCCCeEEEEE
Confidence 999999999999999997
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=321.71 Aligned_cols=284 Identities=11% Similarity=0.109 Sum_probs=233.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
+..+|.++.|+ +++||+++.|+++++|+.++++ ++.++.+ |...|.+++|+|+|+.|++++. | ++
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~~~----d------g~ 75 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGT----D------RN 75 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEET----T------SC
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecC-CCCcccEEEEeCCCCEEEEEcC----C------Ce
Confidence 34445555555 8999999999999999999887 8888887 8889999999999999999773 3 58
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEE---cCCcEEEEEEcC
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI---SDKNVQEIKISP 243 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl---~~~~V~~VafSp 243 (485)
+++|++..+++.....+. .+...+..++|+ |+|++|++++.|++|++||+.+++ ....+ +...|.+++|+|
T Consensus 76 i~vwd~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 152 (372)
T 1k8k_C 76 AYVWTLKGRTWKPTLVIL--RINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 152 (372)
T ss_dssp EEEEEEETTEEEEEEECC--CCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred EEEEECCCCeeeeeEEee--cCCCceeEEEEC-CCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC
Confidence 999999888752211112 234557789998 799999999999999999998876 23444 245899999999
Q ss_pred CceEEEEEcCCCCeeEEEEec------------------CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEE
Q 011452 244 GIMLLIFTKASGHVPLKILSI------------------EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi------------------~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIW 305 (485)
++.++++++ .|++|++||+ .+++++.++.+|...+..++|+ |++..|++++.|++|+||
T Consensus 153 ~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d~~i~i~ 229 (372)
T 1k8k_C 153 NSVLLAAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCLA 229 (372)
T ss_dssp TSSEEEEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEEE
T ss_pred CCCEEEEEc--CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC-CCCCEEEEEeCCCEEEEE
Confidence 776666654 3489999994 5899999999999999999997 678899999999999999
Q ss_pred ECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC---Cc--EE---------------------------
Q 011452 306 DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR---GE--LV--------------------------- 353 (485)
Q Consensus 306 Dv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~---G~--ll--------------------------- 353 (485)
|+++++++..+.+|...|.+++|+|++++|+++.|++|++||++ |+ ++
T Consensus 230 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (372)
T 1k8k_C 230 DADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKA 309 (372)
T ss_dssp EGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC
T ss_pred ECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccc
Confidence 99999999999999999999999999999998889999999994 32 11
Q ss_pred ---------EEe-ecCCCCCCCCCeeEEEE-CCCC---CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 354 ---------TSF-EDHLLWHPDCNTNNIYI-TSDQ---DLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 354 ---------~tl-~gH~~~~~~~~v~svaf-SpDG---~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
..+ .+|... |++++| ++|| ++|+|++. ||+|+|||+.+++.
T Consensus 310 ~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~g~~~~~l~s~~~-----------Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 310 SSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRSLES 364 (372)
T ss_dssp ---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHHHHH
T ss_pred ccccCccccccccccccCC-----cceeEEecCCCcceeeEEEecC-----------CCceEEEEecChhH
Confidence 223 378766 999985 4788 99999997 79999999987654
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=321.89 Aligned_cols=291 Identities=11% Similarity=0.077 Sum_probs=220.8
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEee------------cCCcccEEEEEEee-CCCEEEEEEee
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLN------------VTADEVIRSLFYNK-NNDSLITVSVY 157 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~------------g~~~~~i~sv~~sp-dg~~Las~S~d 157 (485)
|..+|.+|+|+ +++||+++.||+|++|++.+++.+..+. ..|...|.+++|+| +++.|++++.
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~- 120 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSF- 120 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEET-
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeC-
Confidence 34444444443 7999999999999999999988776654 24888999999999 7788988763
Q ss_pred cCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC--CCCeEEEEeeCCCcEEEeecCCCeEEEEEc--C
Q 011452 158 ASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 233 (485)
Q Consensus 158 ~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~--pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~ 233 (485)
| +++++|++..++.. ..+.. ...+..+.|++ +++.+|++++.|++|++||+.+++++.++. .
T Consensus 121 ---d------~~i~iwd~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 186 (408)
T 4a11_B 121 ---D------KTLKVWDTNTLQTA---DVFNF--EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHR 186 (408)
T ss_dssp ---T------SEEEEEETTTTEEE---EEEEC--SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCC
T ss_pred ---C------CeEEEeeCCCCccc---eeccC--CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCC
Confidence 3 59999999888762 23332 33455788863 256699999999999999999999888886 4
Q ss_pred CcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCe-EEEEe---------------ecCCcceeEEEEEecCCCEEEEE
Q 011452 234 KNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGT-VLKSF---------------NHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 234 ~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~-~L~tl---------------~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
..|.+++|+|++. ++++++ .|++|++||+.+++ ++..+ .+|...+..++|+ |++..|+++
T Consensus 187 ~~v~~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 263 (408)
T 4a11_B 187 QEILAVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT-SDGLHLLTV 263 (408)
T ss_dssp SCEEEEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC-TTSSEEEEE
T ss_pred CcEEEEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc-CCCCEEEEe
Confidence 5899999998664 454444 45899999998887 56666 5677889999997 678899999
Q ss_pred eCCCcEEEEECCCCeeEEecccC------CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCee
Q 011452 297 QENENLQILDVRNFELTEVSRTE------FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTN 369 (485)
Q Consensus 297 s~D~tIkIWDv~tg~~~~~l~gh------~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~ 369 (485)
+.|++|++||+.+++......++ ......+...+.+.+++++.|++|++||+. ++++.++.+|... |.
T Consensus 264 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----v~ 338 (408)
T 4a11_B 264 GTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKT-----VD 338 (408)
T ss_dssp ETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSC-----EE
T ss_pred cCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCe-----EE
Confidence 99999999999999876655433 112222333445555555449999999996 9999999999877 99
Q ss_pred EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 370 NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 370 svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
+++|+|||++|++++. ||+|+|||+.+++.+.....+.
T Consensus 339 ~~~~s~~~~~l~s~~~-----------dg~i~iw~~~~~~~~~~~~~~~ 376 (408)
T 4a11_B 339 CCVFQSNFQELYSGSR-----------DCNILAWVPSLYEPVPDDDETT 376 (408)
T ss_dssp EEEEETTTTEEEEEET-----------TSCEEEEEECC-----------
T ss_pred EEEEcCCCCEEEEECC-----------CCeEEEEeCCCCCccCCCCceE
Confidence 9999999999999997 7999999999999887665543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=334.65 Aligned_cols=236 Identities=11% Similarity=0.036 Sum_probs=188.7
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC--CcCcccceeeeccccCceEEEEeCCCCeEEEEee
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG--KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA 212 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G--~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s 212 (485)
+...|++++|+|||+.||+++ .| ++++||++..+ ++. ..+. .+...+..++|+ |+|++|++++
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~----~d------~~i~iw~~~~~~~~~~---~~~~-~h~~~v~~~~~s-~~~~~l~s~s 74 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTT----AT------NQVELYEQDGNGWKHA---RTFS-DHDKIVTCVDWA-PKSNRIVTCS 74 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCC----SS------SCBCEEEEETTEEEEC---CCBC-CCSSCEEEEEEC-TTTCCEEEEE
T ss_pred CCCcEEEEEECCCCCEEEEec----CC------CEEEEEEccCCceEEE---EEEe-cCCceEEEEEEe-CCCCEEEEEe
Confidence 556899999999999999865 34 58999999877 332 1232 245667789998 7999999999
Q ss_pred CCCcEEEeecCCCe---EEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe---EEEEeec-CCcceeEE
Q 011452 213 QDSIYKVFDLKNYT---MLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT---VLKSFNH-LLHRNKKV 283 (485)
Q Consensus 213 ~D~tiKlWdl~~g~---~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~---~L~tl~~-~~~~~~~V 283 (485)
.|++|+|||+.+++ ++..+. ...|.+++|+|++.++++++. |++|+|||+++++ +++.+.+ |...+..+
T Consensus 75 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~ 152 (377)
T 3dwl_C 75 QDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG--ARVISVCYFEQENDWWVSKHLKRPLRSTILSL 152 (377)
T ss_dssp TTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES--SSCEEECCC-----CCCCEEECSSCCSCEEEE
T ss_pred CCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec--CCeEEEEEECCcccceeeeEeecccCCCeEEE
Confidence 99999999999877 555554 468999999997666555543 5899999999998 4888988 99999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECC------------------CCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVR------------------NFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~------------------tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+|+ |++..|++++.|++|+|||++ +++++..+ +|...|.+++|+|+|++|++++ |++|+
T Consensus 153 ~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 153 DWH-PNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVT 230 (377)
T ss_dssp EEC-TTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC
T ss_pred EEc-CCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEE
Confidence 997 678889999999999999995 46788888 9999999999999999999999 99999
Q ss_pred EEeCC-CcE----EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 345 VWNFR-GEL----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 345 lWd~~-G~l----l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|||++ +++ +.++.+|... |.+++|+|||++|++++. |+.+ +|+..
T Consensus 231 iwd~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~~~~~-----------~~~~-~~~~~ 280 (377)
T 3dwl_C 231 IAYPSAPEQPPRALITVKLSQLP-----LRSLLWANESAIVAAGYN-----------YSPI-LLQGN 280 (377)
T ss_dssp -CEECSTTSCEEECCCEECSSSC-----EEEEEEEETTEEEEEESS-----------SSEE-EECCC
T ss_pred EEECCCCCCcceeeEeecCCCCc-----eEEEEEcCCCCEEEEEcC-----------CcEE-EEEeC
Confidence 99996 877 8899999987 999999999999999874 4655 66654
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=327.12 Aligned_cols=294 Identities=10% Similarity=0.121 Sum_probs=233.9
Q ss_pred cccccccccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeec-CCcccEEEEEEeeCCCEEEEEEeecCCCCccc
Q 011452 88 VLPFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (485)
Q Consensus 88 ~~~~~~~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g-~~~~~i~sv~~spdg~~Las~S~d~~~d~stL 165 (485)
-.|.|+...-+.-|.++ +++||++. |++|+|||..+|+++..+.. .|...|.+|+|+|||++||+++. |
T Consensus 98 ~ap~~~~d~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~----D---- 168 (420)
T 4gga_A 98 DAPEIRNDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----S---- 168 (420)
T ss_dssp ECTTCCCCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----T----
T ss_pred ECCCCcccccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC----C----
Confidence 45666666556667888 77777665 99999999999998887764 36778999999999999999774 4
Q ss_pred ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEc
Q 011452 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKIS 242 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~--~~~V~~VafS 242 (485)
++++||++.+|++.. .+. .+...+..+++ |+.+|++|+.|+++++||..... .+.++. ...|..+.++
T Consensus 169 --g~v~iWd~~~~~~~~---~~~-~h~~~v~~~s~---~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 169 --AEVQLWDVQQQKRLR---NMT-SHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp --SCEEEEETTTTEEEE---EEC-CCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred --CeEEEEEcCCCcEEE---EEe-CCCCceEEEee---CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 599999999887621 222 23444445555 57899999999999999988654 556664 4689999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCe----EEEEeecCCcceeEEEEEecCCCEEEEE--eCCCcEEEEECCCCeeEEec
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGT----VLKSFNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFELTEVS 316 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~----~L~tl~~~~~~~~~V~f~~~~~~~lls~--s~D~tIkIWDv~tg~~~~~l 316 (485)
|++.++++++ .|+.|+||++.+|+ .+..+..|...+..++|++.....++++ +.|++|+|||+.+++++..+
T Consensus 240 ~~g~~l~s~~--~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~ 317 (420)
T 4gga_A 240 PDGRHLASGG--NDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV 317 (420)
T ss_dssp TTSSEEEEEE--TTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE
T ss_pred CCCCeeeeee--ccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee
Confidence 8766666654 45899999999886 4577888889999999985545555553 48999999999999999998
Q ss_pred ccCCCceEEEEEcCCCcEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 317 RTEFMTPSAFIFLYENQLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
..|. .+.+++|+|+++.|++++ |++|+|||+. ++++.+|.||... |++|+|||||++|||||.
T Consensus 318 ~~~~-~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~-----V~~l~~spdg~~l~S~s~------- 384 (420)
T 4gga_A 318 DAHS-QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA------- 384 (420)
T ss_dssp ECSS-CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-------
T ss_pred cccc-ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-------
Confidence 7665 788999999999888763 8999999996 9999999999987 999999999999999997
Q ss_pred CcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 393 AEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 393 ~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|++|||||+.+..+..+.+.|.
T Consensus 385 ----D~tvriWdv~~~~~~~~~~~~~ 406 (420)
T 4gga_A 385 ----DETLRLWRCFELDPARRREREK 406 (420)
T ss_dssp ----TTEEEEECCSCSSCC-------
T ss_pred ----CCeEEEEECCCCCccchhhhcc
Confidence 7999999998877766665554
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-40 Score=316.74 Aligned_cols=284 Identities=10% Similarity=0.094 Sum_probs=227.0
Q ss_pred cccceEEEEEe--c-CEEEEEeC---CCeEEeeecccCcEEEEeecCCcccEEEEEEeeC---CCEEEEEEeecCCCCcc
Q 011452 94 KRSKIIEIVAA--R-DIVFALAQ---SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN---NDSLITVSVYASDNFSS 164 (485)
Q Consensus 94 ~~s~V~~i~~s--~-~~ias~s~---dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spd---g~~Las~S~d~~~d~st 164 (485)
|..+|.+|.|+ + .++++++. ||++++|++.+++........|...|.+++|+|+ |+.|++++. |
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~----d--- 89 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF----G--- 89 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET----T---
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC----C---
Confidence 55666666666 5 45667776 9999999999999877666568889999999999 699998773 3
Q ss_pred cceeEEEEeEeccCC-cCcccceeeeccccCceEEE------EeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc---C
Q 011452 165 LRCRSTRIEYIRRGK-PDAGFALFESESLKWPGFVE------FDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS---D 233 (485)
Q Consensus 165 L~~~t~~lw~i~~G~-~~~~~~lf~~~~~~~~~~V~------Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~---~ 233 (485)
+++++|++..++ +. ..+. .+...+..++ |+ |+|++|++++.|++|+|||+.+++ .+.++. +
T Consensus 90 ---g~i~iwd~~~~~~~~---~~~~-~~~~~v~~~~~~~~~~~s-~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 90 ---GNLHIWNLEAPEMPV---YSVK-GHKEIINAIDGIGGLGIG-EGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp ---SCEEEECTTSCSSCS---EEEC-CCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTT
T ss_pred ---CeEEEEeCCCCCccE---EEEE-ecccceEEEeeccccccC-CCccEEEEEeCCCeEEEEeCCCCCCcceeccccCC
Confidence 589999998887 42 1232 2445566674 44 799999999999999999999887 666663 2
Q ss_pred ---CcEEEEE----EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec--CCCEEEEEeCCCcEEE
Q 011452 234 ---KNVQEIK----ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQI 304 (485)
Q Consensus 234 ---~~V~~Va----fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~--~~~~lls~s~D~tIkI 304 (485)
..|++++ |+|++.++++++. |++|++||+++++++.. ..|...+..++|++. ++..+++++.|++|+|
T Consensus 162 ~~~~~v~~~~~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i 238 (357)
T 3i2n_A 162 ENKRDCWTVAFGNAYNQEERVVCAGYD--NGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHV 238 (357)
T ss_dssp SCCCCEEEEEEECCCC-CCCEEEEEET--TSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEE
T ss_pred CCCCceEEEEEEeccCCCCCEEEEEcc--CCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEE
Confidence 2799998 6776666666543 48999999999998655 456788999999732 7889999999999999
Q ss_pred EECCCCeeEEecc-----cCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-C-------------------cEEEEee
Q 011452 305 LDVRNFELTEVSR-----TEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-G-------------------ELVTSFE 357 (485)
Q Consensus 305 WDv~tg~~~~~l~-----gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G-------------------~ll~tl~ 357 (485)
||+++++++..+. +|...|.+++|+|+++ +|++++ |++|+|||++ + +++.++.
T Consensus 239 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 318 (357)
T 3i2n_A 239 FDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT 318 (357)
T ss_dssp EEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE
T ss_pred EeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccc
Confidence 9999988766554 8999999999999999 899999 9999999985 3 4788999
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEE-EEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~La-S~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+|... |.+++|+|||++|+ |++. |++|+|||+.+.++|
T Consensus 319 ~~~~~-----v~~~~~s~~~~~l~~s~~~-----------d~~i~iw~~~~~~~i 357 (357)
T 3i2n_A 319 LSTQP-----ISSLDWSPDKRGLCVCSSF-----------DQTVRVLIVTKLNKI 357 (357)
T ss_dssp CCSSC-----EEEEEECSSSTTEEEEEET-----------TSEEEEEEECC----
T ss_pred cCCCC-----eeEEEEcCCCCeEEEEecC-----------CCcEEEEECCCcccC
Confidence 99877 99999999999998 7886 799999999876653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-38 Score=303.35 Aligned_cols=276 Identities=15% Similarity=0.132 Sum_probs=227.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEE---Eeec-CCcccEEEEEEeeCCCEEEEEEeecCCCCcccce
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRIC---FLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~---tl~g-~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~ 167 (485)
|..+|..+.|+ +++|++++ ||++++|++.+++... ++.. .|...|.+++|+|+|+.|++++. |
T Consensus 50 h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d------ 118 (337)
T 1gxr_A 50 HGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----A------ 118 (337)
T ss_dssp CSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----S------
T ss_pred CCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----C------
Confidence 45555555555 89999999 9999999999876433 3331 47889999999999999999773 3
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~ 245 (485)
+++++|++..++... ...+. .+...+..++|+ |+|++|++++.|++|++||+.+++++.++. ...|.+++|+|++
T Consensus 119 ~~i~~~d~~~~~~~~-~~~~~-~~~~~i~~~~~~-~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 195 (337)
T 1gxr_A 119 STLSIWDLAAPTPRI-KAELT-SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDG 195 (337)
T ss_dssp SEEEEEECCCC--EE-EEEEE-CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred CcEEEEECCCCCcce-eeecc-cCCCceEEEEEC-CCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCC
Confidence 599999998877411 11122 234456689998 799999999999999999999999998886 4589999999976
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEE
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSA 325 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~a 325 (485)
.++++++ .|++|++||+++++++..+. |...+..++|+ |++..+++++.|++|++||+++++.. .+.+|...|.+
T Consensus 196 ~~l~~~~--~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~ 270 (337)
T 1gxr_A 196 TKLWTGG--LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLS 270 (337)
T ss_dssp SEEEEEE--TTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEE
T ss_pred CEEEEEe--cCCcEEEEECCCCceEeeec-CCCceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeE
Confidence 6555544 35899999999999999886 45788999996 77889999999999999999998875 45689999999
Q ss_pred EEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE
Q 011452 326 FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS 403 (485)
Q Consensus 326 vaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW 403 (485)
++|+|++++|++++ |++|++||++ ++++..+ .|... |.+++|+|||++|++++. ||+|+||
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~-----v~~~~~s~~~~~l~~~~~-----------dg~i~iw 333 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSS-----VLSCDISVDDKYIVTGSG-----------DKKATVY 333 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSC-----EEEEEECTTSCEEEEEET-----------TSCEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCc-----EEEEEECCCCCEEEEecC-----------CCeEEEE
Confidence 99999999999999 9999999996 8877554 46555 999999999999999987 7999999
Q ss_pred eC
Q 011452 404 NI 405 (485)
Q Consensus 404 dl 405 (485)
|+
T Consensus 334 ~~ 335 (337)
T 1gxr_A 334 EV 335 (337)
T ss_dssp EE
T ss_pred EE
Confidence 96
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-39 Score=309.43 Aligned_cols=299 Identities=13% Similarity=0.067 Sum_probs=235.8
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeC---CCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeecc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKN---NDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESES 191 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spd---g~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~ 191 (485)
.+..|+....+.+..+.+ |.+.|.+|+|+|+ |+.||+++. | ++++||++.. ++... ..+. .+
T Consensus 20 ~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~g~~l~~~~~----d------g~i~iw~~~~~~~~~~--~~~~-~h 85 (368)
T 3mmy_A 20 SATTDNHNPMKDIEVTSS-PDDSIGCLSFSPPTLPGNFLIAGSW----A------NDVRCWEVQDSGQTIP--KAQQ-MH 85 (368)
T ss_dssp ---CCSSCTTCCEECSSC-CSSCEEEEEECCTTSSSEEEEEEET----T------SEEEEEEECTTSCEEE--EEEE-EC
T ss_pred EeccCCCCCcceeEeccC-CCCceEEEEEcCCCCCceEEEEECC----C------CcEEEEEcCCCCceeE--EEec-cc
Confidence 344556666777777776 8889999999999 699999774 4 5999999977 44310 1222 34
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-cCCcEEEEEE--cCCceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-SDKNVQEIKI--SPGIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~~~~V~~Vaf--Spg~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
...+..++|+ |+|++|++++.|++|+|||+.+++++... +...|.+++| +|++.++++++. |++|++||+++++
T Consensus 86 ~~~v~~~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 86 TGPVLDVCWS-DDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW--DKTLKFWDTRSSN 162 (368)
T ss_dssp SSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET--TSEEEEECSSCSS
T ss_pred cCCEEEEEEC-cCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC--CCcEEEEECCCCc
Confidence 5667789998 79999999999999999999999977655 4678999999 887776666543 4899999999999
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--ecccCCCceEEEEEcCCCcE----EEEEe-CC
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VSRTEFMTPSAFIFLYENQL----FLTFR-NR 341 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l~gh~~~v~avaFspdg~l----laS~s-D~ 341 (485)
++.++..+ ..+..+.+. +..+++++.|+++++||+++..... ....+...+..+++.++... +++++ |+
T Consensus 163 ~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 238 (368)
T 3mmy_A 163 PMMVLQLP-ERCYCADVI---YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG 238 (368)
T ss_dssp CSEEEECS-SCEEEEEEE---TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred EEEEEecC-CCceEEEec---CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence 99999976 355566654 4688889999999999999764322 22334456666777666554 88998 99
Q ss_pred cEEEEeCC-C---cEEEEeecCCCCCC-------CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 342 TVAVWNFR-G---ELVTSFEDHLLWHP-------DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 342 TIklWd~~-G---~ll~tl~gH~~~~~-------~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+|++||++ + +++.++.+|..... ...|.+++|+|||++|++++. ||+|+|||+.++++
T Consensus 239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-----------dg~i~iwd~~~~~~ 307 (368)
T 3mmy_A 239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-----------DGRFSFWDKDARTK 307 (368)
T ss_dssp EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEE
T ss_pred cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-----------CCeEEEEECCCCcE
Confidence 99999996 5 67889999875100 001899999999999999997 79999999999999
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+.++.+|.. .|++|+|+|||+.||+||.|+.++.|+
T Consensus 308 ~~~~~~~~~--------------------------------------~v~~~~~s~~g~~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 308 LKTSEQLDQ--------------------------------------PISACCFNHNGNIFAYASSYDWSKGHE 343 (368)
T ss_dssp EEECCCCSS--------------------------------------CEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred EEEecCCCC--------------------------------------CceEEEECCCCCeEEEEeccccccccc
Confidence 999999973 899999999999999999998776664
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=320.67 Aligned_cols=278 Identities=13% Similarity=0.158 Sum_probs=233.6
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
...++.+++...+.++.| +++.|+++|. | ++++||++.+|++.. .+. +|...+..++|+ |++
T Consensus 113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~----d------g~i~vwd~~~~~~~~---~~~-~h~~~V~~l~~~-~~~- 174 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQF--EDNYVITGAD----D------KMIRVYDSINKKFLL---QLS-GHDGGVWALKYA-HGG- 174 (464)
T ss_dssp EEEEEECCSSSCEEEEEE--ETTEEEEEET----T------SCEEEEETTTTEEEE---EEC-CCSSCEEEEEEC-STT-
T ss_pred ceEEEcCCCCCcEEEEEE--CCCEEEEEcC----C------CcEEEEECCCCcEEE---EEe-CCCcCEEEEEEc-CCC-
Confidence 455777744555676666 5679999774 4 599999998888622 222 355677889997 677
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEc--CCceEEEEEcCCCCeeEEEEecCCCe--------------
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGT-------------- 268 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafS--pg~~ll~sss~~~D~tIklWdi~tG~-------------- 268 (485)
+|++|+.|++|+|||+.+++++.++. ...|.+++|+ |++.++++++ .|++|++||+.+++
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s--~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS--RDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE--TTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc--CCCcEEEeeCCCCcccccccccCCcceE
Confidence 89999999999999999999999986 4589999999 4656666654 35899999999887
Q ss_pred ---------EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 269 ---------VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 269 ---------~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
++.++.+|...+..+. +++..+++++.|++|++||+++++++..+.+|...|.+++|+|++++|++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred eeccCCCeEEEEEccCccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence 3667888877777764 5688999999999999999999999999999999999999999999999999
Q ss_pred -CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 340 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 340 -D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
|++|++||++ |+++.++.+|... |..++|+ +++|+|++. ||+|++||+.+++++..+. |
T Consensus 330 ~dg~i~vwd~~~~~~~~~~~~h~~~-----v~~~~~~--~~~l~s~s~-----------dg~v~vwd~~~~~~~~~~~-~ 390 (464)
T 3v7d_B 330 MDTTIRIWDLENGELMYTLQGHTAL-----VGLLRLS--DKFLVSAAA-----------DGSIRGWDANDYSRKFSYH-H 390 (464)
T ss_dssp TTSCEEEEETTTTEEEEEECCCSSC-----EEEEEEC--SSEEEEEET-----------TSEEEEEETTTCCEEEEEE-C
T ss_pred CCCcEEEEECCCCcEEEEEeCCCCc-----EEEEEEc--CCEEEEEeC-----------CCcEEEEECCCCceeeeec-C
Confidence 9999999996 9999999999987 9999997 589999997 7999999999998877764 3
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+..++|+|+++.|++|+ |++|+|||.
T Consensus 391 ~--------------------------------------~~~~~~~~~~~~~~l~~~~-dg~i~iwd~ 419 (464)
T 3v7d_B 391 T--------------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 419 (464)
T ss_dssp T--------------------------------------TCCCEEEEEECSSEEEEEE-TTEEEEEET
T ss_pred C--------------------------------------CCccEEEEEeCCCEEEEec-CCeEEEEEC
Confidence 2 1667789999999999999 999999984
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=320.64 Aligned_cols=303 Identities=9% Similarity=0.078 Sum_probs=215.4
Q ss_pred eeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEE
Q 011452 119 AFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV 198 (485)
Q Consensus 119 lW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V 198 (485)
+|++.+.+.+.+++. |...|++|+|||||+.||+++ ++ .++||++..++. ++.. ....+..+
T Consensus 3 i~s~~~~~~~~~~~~-h~~~V~~v~fs~dg~~la~g~----~~-------~~~iw~~~~~~~-----~~~~-~~~~~~~~ 64 (355)
T 3vu4_A 3 LGSMITRNPIVPENH-VSNPVTDYEFNQDQSCLILST----LK-------SFEIYNVHPVAH-----IMSQ-EMRHLSKV 64 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEEC----SS-------EEEEEEETTEEE-----EEEE-ECSCCCEE
T ss_pred cccccccCCcccccc-CCCceEEEEECCCCCEEEEEc----CC-------EEEEEecCCcce-----eeee-ecCCeEEE
Confidence 566777888877776 888999999999999998855 44 578999876654 2322 22345678
Q ss_pred EEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeec
Q 011452 199 EFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNH 275 (485)
Q Consensus 199 ~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~ 275 (485)
+|. +++..+ ++++.|++|+|||+.+++++.++. ...|.+|+|+|+..+++. |++|+|||+.++ ++++++..
T Consensus 65 ~~~-~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~-----~~~i~i~d~~~~~~~~~~~~~ 138 (355)
T 3vu4_A 65 RML-HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSY-----GDVISVFKFGNPWKRITDDIR 138 (355)
T ss_dssp EEC-TTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEE-----TTEEEEEESSTTCCBSSCCEE
T ss_pred EEc-CCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEE-----cCEEEEEECCCCceeeEEecc
Confidence 887 566665 567889999999999999998886 468999999998765543 368999999999 88877774
Q ss_pred CCcceeEEEEEecCCCEEEEE--eCCCcEEEEECCCCe----------------eEEecccCCCceEEEEEcCCCcEEEE
Q 011452 276 LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRNFE----------------LTEVSRTEFMTPSAFIFLYENQLFLT 337 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~--s~D~tIkIWDv~tg~----------------~~~~l~gh~~~v~avaFspdg~llaS 337 (485)
....++|+ + ..++++ +.|++|+|||+.+++ ++.++.+|...|++++|+|||++|||
T Consensus 139 ---~~~~~~~s-~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 ---FGGVCEFS-N--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp ---EEEEEEEE-T--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ---CCceEEEE-c--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEE
Confidence 33455554 3 677774 699999999999876 37888999999999999999999999
Q ss_pred Ee-CCc-EEEEeCC-CcEEEEee-c-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--
Q 011452 338 FR-NRT-VAVWNFR-GELVTSFE-D-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC-- 410 (485)
Q Consensus 338 ~s-D~T-IklWd~~-G~ll~tl~-g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~-- 410 (485)
++ |++ |+|||++ |+++.+|. + |... |++++|+|||++|++++. |++|+|||+.++..
T Consensus 213 ~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~-----v~~~~~s~~~~~l~s~s~-----------d~~v~iw~~~~~~~~~ 276 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVLVREFRRGLDRAD-----VVDMKWSTDGSKLAVVSD-----------KWTLHVFEIFNDQDNK 276 (355)
T ss_dssp EETTCSEEEEEETTTCCEEEEEECTTCCSC-----EEEEEECTTSCEEEEEET-----------TCEEEEEESSCCSCCC
T ss_pred EeCCCCEEEEEECCCCcEEEEEEcCCCCCc-----EEEEEECCCCCEEEEEEC-----------CCEEEEEEccCCCCcc
Confidence 99 999 9999996 99999999 6 8877 999999999999999997 79999999986531
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
...+.++- .+.++.. ......+... ......+..++|+|||+.|++|+.||++++|+
T Consensus 277 ~~~~~~~~-~~~~~~~----~~~~~~~~~~------------~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 277 RHALKGWI-NMKYFQS----EWSLCNFKLS------------VDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp SEETTTTE-ECCCCCC----SSCSEEEECC------------CCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ccccccee-ecccccc----ccceeEEEec------------cCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 12222210 0000000 0000000000 00001346799999999999999999999997
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=359.07 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=206.1
Q ss_pred cCcEEEEeecCCcccEEEEEEeeCC---------CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 124 TNQRICFLNVTADEVIRSLFYNKNN---------DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 124 tG~~l~tl~g~~~~~i~sv~~spdg---------~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
++++..+++ +.+.|++|+|+|++ ++||+++.. + +. .
T Consensus 123 ~~r~~~~~~--~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~---~----------------~~----------~---- 167 (524)
T 2j04_B 123 GKRRGFIYN--VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQ---Y----------------MD----------E---- 167 (524)
T ss_dssp CCSCEEEEE--CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-------------------------------------
T ss_pred CCcceEEEE--CCCceeEEEecccCCCCccCcCCeEEEEEEec---c----------------cC----------C----
Confidence 355555665 45689999999998 788886631 1 00 0
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE----EEEEc--CCcEEEEEEcCC------ceEEEEEcCCCCeeEEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS--DKNVQEIKISPG------IMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~----l~tl~--~~~V~~VafSpg------~~ll~sss~~~D~tIklW 262 (485)
.++ |++++|||++.|++|||||+.++++ ..++. ...|+.|+|+|+ +.+|++++ .|++||||
T Consensus 168 ----~~~-~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s--~DgtvrlW 240 (524)
T 2j04_B 168 ----PLN-EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVS--QEGTINFL 240 (524)
T ss_dssp -------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEE--TTSCEEEE
T ss_pred ----ccc-hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEe--cCCeEEEE
Confidence 123 7999999999999999999988764 23443 467999999985 34555544 35899999
Q ss_pred ecCCCeE-----------EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe-eEEecccCCCceEEE--EE
Q 011452 263 SIEDGTV-----------LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE-LTEVSRTEFMTPSAF--IF 328 (485)
Q Consensus 263 di~tG~~-----------L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~-~~~~l~gh~~~v~av--aF 328 (485)
|+.++++ ..++.+|...+.+|+|++ ++.|++++.|++|+|||+++++ +..++.+|...|.+| +|
T Consensus 241 d~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~ 318 (524)
T 2j04_B 241 EIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLS--PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAY 318 (524)
T ss_dssp ECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESS--SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEEC
T ss_pred EcCCCccccccceeecCceEEEEcCCCCEEEEEecC--CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEc
Confidence 9988753 247889999999999974 4589999999999999999874 456788999999999 68
Q ss_pred cCCC-cEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 329 LYEN-QLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 329 spdg-~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+|+| ++|||++ |+||||||++ ++++.++.+|... ..|++|+|+|||+.||+++. |++|||||+
T Consensus 319 s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~~-----------d~tv~lwd~ 384 (524)
T 2j04_B 319 SDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG---SNLVPVVYCPQIYSYIYSDG-----------ASSLRAVPS 384 (524)
T ss_dssp CTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC---CSCCCEEEETTTTEEEEECS-----------SSEEEEEET
T ss_pred CCCCCeEEEEeccCCeEEEEECCCCCccccccccccc---CcccceEeCCCcCeEEEeCC-----------CCcEEEEEC
Confidence 9998 9999999 9999999996 8888889888642 12789999999999999886 799999999
Q ss_pred CCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 406 LTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 406 ~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+++|+.++.+|.+ .|++|+|||||+.|+|||.|++|+|||.
T Consensus 385 ~~~~~~~~l~gH~~--------------------------------------~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 385 RAAFAVHPLVSRET--------------------------------------TITAIGVSRLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp TCTTCCEEEEECSS--------------------------------------CEEEEECCSSCCBCEEEETTTEEECCBS
T ss_pred cccccceeeecCCC--------------------------------------ceEEEEeCCCCCeEEEEECCCEEEEEec
Confidence 99999999999983 8999999999999999999999999983
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-38 Score=299.61 Aligned_cols=271 Identities=10% Similarity=0.114 Sum_probs=216.0
Q ss_pred EEEe-cCEEEEEeCCCeEEeeecccCcEEEEeec-CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC
Q 011452 101 IVAA-RDIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (485)
Q Consensus 101 i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g-~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G 178 (485)
|.+| +.+||++ .|++|+|||.++|+++.++.. +|...|.+|+|+|+|+.||++|. | ++++||++.+|
T Consensus 31 l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~----D------g~v~iw~~~~~ 99 (318)
T 4ggc_A 31 VDWSSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS----S------AEVQLWDVQQQ 99 (318)
T ss_dssp EEECTTSEEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET----T------SEEEEEETTTT
T ss_pred EEECCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC----C------CcEEEeecCCc
Confidence 4455 4677665 599999999999999998864 37778999999999999999774 4 59999999998
Q ss_pred CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc--CCcEEEEEEcCCceEEEEEcCCC
Q 011452 179 KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKISPGIMLLIFTKASG 255 (485)
Q Consensus 179 ~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~--~~~V~~VafSpg~~ll~sss~~~ 255 (485)
++.. .+. .+... ...++ +++++|++++.|+++++|+..++. .+.++. ...+..++|++.+.++++++ .
T Consensus 100 ~~~~---~~~-~h~~~--~~~~~-~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~--~ 170 (318)
T 4ggc_A 100 KRLR---NMT-SHSAR--VGSLS-WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG--N 170 (318)
T ss_dssp EEEE---EEE-CCSSC--EEEEE-EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--T
T ss_pred eeEE---Eec-Cccce--EEEee-cCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe--c
Confidence 8622 222 23232 33444 467899999999999999998765 555554 46899999998666666654 4
Q ss_pred CeeEEEEecCCCeE----EEEeecCCcceeEEEEEecCCCEEEE--EeCCCcEEEEECCCCeeEEecccCCCceEEEEEc
Q 011452 256 HVPLKILSIEDGTV----LKSFNHLLHRNKKVDFIEQFNEKLLV--KQENENLQILDVRNFELTEVSRTEFMTPSAFIFL 329 (485)
Q Consensus 256 D~tIklWdi~tG~~----L~tl~~~~~~~~~V~f~~~~~~~lls--~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs 329 (485)
|++|+|||+++|+. +.....|.+.+..+++.+..+..+.. ++.|++|+|||.+++...... .|...+..+.|+
T Consensus 171 d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~ 249 (318)
T 4ggc_A 171 DNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-DAHSQVCSILWS 249 (318)
T ss_dssp TSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE-ECSSCEEEEEEE
T ss_pred CcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc-cceeeeeeeeec
Confidence 58999999998874 35556677888899997443443333 358999999999998887776 466689999999
Q ss_pred CCCcEEEEE--e-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 330 YENQLFLTF--R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 330 pdg~llaS~--s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
|+++.++++ + |++|+|||++ |+++.+|++|... |++|+|+|||++|||+|. ||+|||||+
T Consensus 250 ~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~-----V~~l~~spdg~~l~S~s~-----------D~~v~iWd~ 313 (318)
T 4ggc_A 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR-----VLSLTMSPDGATVASAAA-----------DETLRLWRC 313 (318)
T ss_dssp TTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TTEEEEECC
T ss_pred ccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEec-----------CCeEEEEEC
Confidence 999988765 3 8999999996 9999999999988 999999999999999997 799999998
Q ss_pred CCC
Q 011452 406 LTG 408 (485)
Q Consensus 406 ~TG 408 (485)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=313.99 Aligned_cols=281 Identities=12% Similarity=0.034 Sum_probs=230.1
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-cceeeeccccCceEEEEeCCCCe-EE
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-FALFESESLKWPGFVEFDDVNGK-VL 208 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~pnG~-~L 208 (485)
+...|.+.|.+++|+|+|+.|++++. | ++++||++..++.... ..++ .+...+..++|+ |+|+ +|
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~----d------~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~~l 72 (342)
T 1yfq_A 6 IEQAPKDYISDIKIIPSKSLLLITSW----D------GSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFI-DNTDLQI 72 (342)
T ss_dssp CSSCCSSCEEEEEEEGGGTEEEEEET----T------SEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEE-ESSSEEE
T ss_pred cccCCCCcEEEEEEcCCCCEEEEEcC----C------CeEEEEEeCCCCccccceeee--ecCCceEEEEEC-CCCCcEE
Confidence 33458899999999999999999774 3 5999999988772110 1122 345567789998 7999 99
Q ss_pred EEeeCCCcEEEeec-CCCeEEEEE----cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC---------CeEEEEee
Q 011452 209 TYSAQDSIYKVFDL-KNYTMLYSI----SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED---------GTVLKSFN 274 (485)
Q Consensus 209 as~s~D~tiKlWdl-~~g~~l~tl----~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t---------G~~L~tl~ 274 (485)
++++.|++|++||+ .+++. ..+ +...|.+++|+|+..++++ + .|++|++||+.+ ++++.++.
T Consensus 73 ~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~l~s~-~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 73 YVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYGDDKLIAA-S--WDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp EEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEETTTEEEEE-E--TTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred EEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCCCCEEEEE-c--CCCeEEEEcccccccccccccCCeeeEEe
Confidence 99999999999999 88775 344 4458999999995555544 3 458999999998 88888888
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCC-Ce--eEEecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCC
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FE--LTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~--~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~ 349 (485)
|...+..++|+ + +.+++++.|++|++||+++ ++ .......|...|.+++|+| ++++|++++ |++|+||+++
T Consensus 149 -~~~~v~~~~~~-~--~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~ 224 (342)
T 1yfq_A 149 -VKNKIFTMDTN-S--SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224 (342)
T ss_dssp -SCCCEEEEEEC-S--SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred -eCCceEEEEec-C--CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence 77889999996 3 3388899999999999998 54 3445567888999999999 999999999 9999999996
Q ss_pred -C------cEEEEeecCCCCC----CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC-
Q 011452 350 -G------ELVTSFEDHLLWH----PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS- 417 (485)
Q Consensus 350 -G------~ll~tl~gH~~~~----~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH- 417 (485)
+ +++.+|.+|.... ....|.+++|+|||++|++++. ||+|+|||+.+++++.++.+|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~h 293 (342)
T 1yfq_A 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFAKFN 293 (342)
T ss_dssp TTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECCCCS
T ss_pred CCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecC-----------CceEEEEcCccHhHhhhhhccc
Confidence 5 8899999996500 0012999999999999999987 799999999999999999998
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc-EEEc
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL-VHVW 483 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt-VklW 483 (485)
.. .|++++ |||+.|+||+.||+ .+.|
T Consensus 294 ~~--------------------------------------~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 294 ED--------------------------------------SVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SS--------------------------------------EEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CC--------------------------------------CceEec--CCCCeEEEEecCCcccccc
Confidence 62 899999 99999999999999 4433
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=325.32 Aligned_cols=316 Identities=11% Similarity=0.151 Sum_probs=229.1
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc-----c---cceeeeccc------------cC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA-----G---FALFESESL------------KW 194 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~-----~---~~lf~~~~~------------~~ 194 (485)
+.+.|.+|+|+|+|+.||+++. | ++++||++..++... . ...+. .|. ..
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~----d------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDK----G------GRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEET----T------SEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCC
T ss_pred ccCcEEEEEECCCCCEEEEEcC----C------CeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCc
Confidence 5678999999999999999774 3 599999998776200 0 11222 233 45
Q ss_pred ceEEEEeCCCC--eEEEEeeCCCcEEEeecCCCeEE---------------------------------------EEE--
Q 011452 195 PGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTML---------------------------------------YSI-- 231 (485)
Q Consensus 195 ~~~V~Fs~pnG--~~Las~s~D~tiKlWdl~~g~~l---------------------------------------~tl-- 231 (485)
+..|+|+ |++ ..|++++.|++|+|||+.+++.. ..+
T Consensus 96 V~~l~~~-~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 96 INKIRWL-PQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCEEEEC-CCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred eEEEEEc-CCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 7789998 687 78999999999999999875542 122
Q ss_pred -cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC-CCeEEEE-------eecCCcceeEEEEEecCC-CEEEEEeCCCc
Q 011452 232 -SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKS-------FNHLLHRNKKVDFIEQFN-EKLLVKQENEN 301 (485)
Q Consensus 232 -~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~-tG~~L~t-------l~~~~~~~~~V~f~~~~~-~~lls~s~D~t 301 (485)
|...|.+++|+|++.+++++ .|++|+|||++ .++++.. +.+|...+..++|+ |++ ..|++++.|++
T Consensus 175 ~h~~~v~~~~~~~~~~~l~s~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 175 AHTYHINSISINSDYETYLSA---DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGT 250 (447)
T ss_dssp CCSSCCCEEEECTTSSEEEEE---CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSC
T ss_pred CCCcceEEEEEcCCCCEEEEe---CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCe
Confidence 34689999999977777765 36899999998 5566663 56888899999997 566 78888999999
Q ss_pred EEEEECCCCee----EEecccCCC------------ceEEEEEcCCCcEEEEEeCCcEEEEeCC--CcEEEEeecCCCCC
Q 011452 302 LQILDVRNFEL----TEVSRTEFM------------TPSAFIFLYENQLFLTFRNRTVAVWNFR--GELVTSFEDHLLWH 363 (485)
Q Consensus 302 IkIWDv~tg~~----~~~l~gh~~------------~v~avaFspdg~llaS~sD~TIklWd~~--G~ll~tl~gH~~~~ 363 (485)
|+|||++++++ +..+.+|.. .|.+++|+|+|++|+++++++|+|||++ ++++.++.+|....
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~ 330 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLR 330 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGT
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccc
Confidence 99999999997 788888886 8999999999999999989999999994 88999999997431
Q ss_pred C--------CC--CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCC
Q 011452 364 P--------DC--NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYS 433 (485)
Q Consensus 364 ~--------~~--~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~ 433 (485)
. ++ .+..++|+|||++|++++. ||+|+|||+.+++++ ++.+|.+.... .++.+..+
T Consensus 331 ~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~-----------dg~v~iwd~~~~~~~-~~~~~~~~~~~-~~~~~~~~- 396 (447)
T 3dw8_B 331 SKLCSLYENDCIFDKFECCWNGSDSVVMTGSY-----------NNFFRMFDRNTKRDI-TLEASRENNKP-RTVLKPRK- 396 (447)
T ss_dssp TTHHHHHHTSGGGCCCCEEECTTSSEEEEECS-----------TTEEEEEETTTCCEE-EEECCSTTCCT-TCBCCCCC-
T ss_pred ccccccccccccccceEEEECCCCCEEEEecc-----------CCEEEEEEcCCCcce-eeeeccccccc-ccccCCcc-
Confidence 1 00 0224999999999999987 799999999999987 67777641110 00000000
Q ss_pred CCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 434 SGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.... .+.. ........-.+...|..++|+|+|+.||+|+.|+ +.+|+
T Consensus 397 ~~~~--~~~~-~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~ 443 (447)
T 3dw8_B 397 VCAS--GKRK-KDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ 443 (447)
T ss_dssp EECS--SCCC-TTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred cccc--CCcc-cccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence 0000 0000 0000000111224789999999999999999988 56664
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=338.58 Aligned_cols=282 Identities=14% Similarity=0.150 Sum_probs=217.4
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEee-cCCcccEEEEEEee-CCCEEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~-g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~ 168 (485)
+...|.+|+|+ +.+||+|+.||+|+|||..+++..+.+. .+|...|.+|+|+| |++.|+|+|. | +
T Consensus 118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~----D------~ 187 (435)
T 4e54_B 118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM----E------G 187 (435)
T ss_dssp CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS----S------S
T ss_pred CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC----C------C
Confidence 46679999997 5699999999999999998887655443 23888999999998 6899999774 4 5
Q ss_pred EEEEeEeccCCcCcccceeee--ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFES--ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg 244 (485)
+++|||++.+.+ ..+.. ....++.+++|+ |+|++|++|+.|++|+|||+. ++++.++. ...|.+|+|+|+
T Consensus 188 ~v~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~ 261 (435)
T 4e54_B 188 TTRLQDFKGNIL----RVFASSDTINIWFCSLDVS-ASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPC 261 (435)
T ss_dssp CEEEEETTSCEE----EEEECCSSCSCCCCCEEEE-TTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTT
T ss_pred EEEEeeccCCce----eEEeccCCCCccEEEEEEC-CCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCC
Confidence 999999865543 12222 223345689998 799999999999999999986 45566664 468999999984
Q ss_pred -ceEEEEEcCCCCeeEEEEecCCCeEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC
Q 011452 245 -IMLLIFTKASGHVPLKILSIEDGTVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 245 -~~ll~sss~~~D~tIklWdi~tG~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~ 320 (485)
..++++++ .|++|+|||+.+++....+ .+|...|.+|+|+ |++.+|++++.|++|+|||+.++++...+.+|.
T Consensus 262 ~~~~~~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~ 338 (435)
T 4e54_B 262 CDWFLATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFS-PDGARLLTTDQKSEIRVYSASQWDCPLGLIPHP 338 (435)
T ss_dssp CSSEEEEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBC-TTSSEEEEEESSSCEEEEESSSSSSEEEECCCC
T ss_pred CceEEEEec--CcceeeEEecccccccceEEEeeeccccccceeEC-CCCCeeEEEcCCCEEEEEECCCCccceEEeccc
Confidence 44555544 4589999999988765544 5788889999997 788999999999999999999999888876664
Q ss_pred C------ceEEEEEcCCCcEEEEEe-------------CCcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEE-EECCCCC
Q 011452 321 M------TPSAFIFLYENQLFLTFR-------------NRTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNI-YITSDQD 378 (485)
Q Consensus 321 ~------~v~avaFspdg~llaS~s-------------D~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~sv-afSpDG~ 378 (485)
. .+....|+|++.++++++ +++|++||.+ |+++.++. +|... |.++ +|+|||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~-----v~s~~~fspdg~ 413 (435)
T 4e54_B 339 HRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSG-----ISSLNEFNPMGD 413 (435)
T ss_dssp CCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCC-----CCCEEEECTTSS
T ss_pred ccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCc-----EEEEEEECCCCC
Confidence 3 233445666666655543 3689999996 99998875 56555 7776 7999999
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+||||+ |++|+|||+++|+..
T Consensus 414 ~lasg~------------d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 414 TLASAM------------GYHILIWSQQEARTR 434 (435)
T ss_dssp CEEEEC------------SSEEEECCCC-----
T ss_pred EEEEEc------------CCcEEEEECCcCeee
Confidence 999986 589999999999864
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=327.14 Aligned_cols=282 Identities=13% Similarity=0.125 Sum_probs=221.2
Q ss_pred cccceEEEEEe---cCEEEEEeCCCeEEeeeccc---CcEEE-EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRET---NQRIC-FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s---~~~ias~s~dgtiklW~~~t---G~~l~-tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
|..+|.+|+|+ +++||+++.||+|++||+.+ ++... .+...|...|.+|+|+|+++.|++++. |
T Consensus 62 h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~----d----- 132 (437)
T 3gre_A 62 EPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK----D----- 132 (437)
T ss_dssp TTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET----T-----
T ss_pred CCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC----C-----
Confidence 44556666665 68999999999999999987 65332 333348889999999999999999774 4
Q ss_pred eeEEEEeEec---cCCcCcccceeeec-----------cccCceEEE--EeCCCCeEEEEeeCCCcEEEeecCCCeEEEE
Q 011452 167 CRSTRIEYIR---RGKPDAGFALFESE-----------SLKWPGFVE--FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (485)
Q Consensus 167 ~~t~~lw~i~---~G~~~~~~~lf~~~-----------~~~~~~~V~--Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t 230 (485)
++++||++. .|+... .+... +...+..++ ++ ++|.+|++++.|++|++||+.+++++.+
T Consensus 133 -g~i~vwd~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 207 (437)
T 3gre_A 133 -GQIIVLKVNHYQQESEVK---FLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQI 207 (437)
T ss_dssp -SEEEEEEEEEEEETTEEE---EEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEEE
T ss_pred -CEEEEEEeccccCCceee---ccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeEE
Confidence 599999994 666521 11110 111222333 43 6899999999999999999999999988
Q ss_pred EcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEe---cCCCEEEEEeCCCcE
Q 011452 231 ISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIE---QFNEKLLVKQENENL 302 (485)
Q Consensus 231 l~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~---~~~~~lls~s~D~tI 302 (485)
+.. ..|.+++|+|++.++++++. |++|+|||++++++++++. .|...+..++|.+ +++..|++++.|++|
T Consensus 208 ~~~~~h~~~v~~~~~s~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 208 IENSPRHGAVSSICIDEECCVLILGTT--RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp EECCGGGCCEEEEEECTTSCEEEEEET--TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred EccCCCCCceEEEEECCCCCEEEEEcC--CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 854 68999999997777666554 4899999999999999997 6667888997764 345577778899999
Q ss_pred EEEECCCCeeEEecccC--------------------------CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE
Q 011452 303 QILDVRNFELTEVSRTE--------------------------FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 354 (485)
Q Consensus 303 kIWDv~tg~~~~~l~gh--------------------------~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~ 354 (485)
+|||+++++++.++.+| ...|++++|+ ++++|+|++ |++|++||++ ++++.
T Consensus 286 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~ 364 (437)
T 3gre_A 286 TIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSK 364 (437)
T ss_dssp EEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCE
T ss_pred EEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccce
Confidence 99999999998887654 4557788888 779999999 9999999996 99998
Q ss_pred EeecCCC---------------------------------CCCCCCeeEEEECCC--CCEEEEEecCCCCCCCCcCCCCe
Q 011452 355 SFEDHLL---------------------------------WHPDCNTNNIYITSD--QDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 355 tl~gH~~---------------------------------~~~~~~v~svafSpD--G~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
++.+|.. .|.+ .|++|+|+++ +.+|+||+. ||+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~I~~i~~~~~~~~~~l~s~~~-----------dG~ 432 (437)
T 3gre_A 365 AVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHD-IINSISTCEVDETPLLVACDN-----------SGL 432 (437)
T ss_dssp EEECC--CCCEEEEEEEETTEEEEEEECC-------------CC-CEEEEEEEESSSSEEEEEEET-----------TSC
T ss_pred EEecccccCceEEEEEeecceEEEEEecccccccccCccccccc-ceeeEeeeccCCceEEEEEcC-----------Cce
Confidence 8887421 0122 2999999998 889999987 799
Q ss_pred EEEEe
Q 011452 400 INISN 404 (485)
Q Consensus 400 IklWd 404 (485)
|+||+
T Consensus 433 I~iw~ 437 (437)
T 3gre_A 433 IGIFQ 437 (437)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-39 Score=312.16 Aligned_cols=247 Identities=9% Similarity=0.060 Sum_probs=196.4
Q ss_pred EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC-CCeE
Q 011452 129 CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV-NGKV 207 (485)
Q Consensus 129 ~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~ 207 (485)
.++.+ |.+.|++++|+|+|+.||++|. | ++++||++..+.... ...+. +|...+..|+|++| +|++
T Consensus 3 ~~~~~-h~~~V~~~~~s~~g~~las~s~----D------~~v~iw~~~~~~~~~-~~~l~-gH~~~V~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 3 VIANA-HNEMIHDAVMDYYGKRMATCSS----D------KTIKIFEVEGETHKL-IDTLT-GHEGPVWRVDWAHPKFGTI 69 (297)
T ss_dssp EECCS-CSSCEEEEEECTTSSEEEEEET----T------SCEEEEEBCSSCBCC-CEEEC-CCSSCEEEEEECCGGGCSE
T ss_pred eeccC-CcCceEEEEECCCCCEEEEEeC----C------CEEEEEecCCCCcEE-EEEEc-cccCCeEEEEecCCCcCCE
Confidence 34555 8889999999999999999874 4 599999986432211 11222 35566788999754 5999
Q ss_pred EEEeeCCCcEEEeecCCCe--EEEEE--cCCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCeE--EEEeecCCcc
Q 011452 208 LTYSAQDSIYKVFDLKNYT--MLYSI--SDKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTV--LKSFNHLLHR 279 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~--~l~tl--~~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~~--L~tl~~~~~~ 279 (485)
||+||.|++|||||+.+++ .+.++ +...|.+|+|+|+ +.++++++ .|++|+|||+.++.. ...+.+|...
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~h~~~ 147 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIG 147 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEEBCSSSCBCCEEEECCSSC
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEE--CCCcEEEEEecCCCceeeeeeecccCc
Confidence 9999999999999999874 45555 4568999999984 44444444 458999999988742 4678899999
Q ss_pred eeEEEEEec------------CCCEEEEEeCCCcEEEEECCCCe----eEEecccCCCceEEEEEcCCC---cEEEEEe-
Q 011452 280 NKKVDFIEQ------------FNEKLLVKQENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYEN---QLFLTFR- 339 (485)
Q Consensus 280 ~~~V~f~~~------------~~~~lls~s~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspdg---~llaS~s- 339 (485)
+.+++|++. ++..|++++.|++|+|||+++++ +..++.+|...|.+++|+|++ ++|||++
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~ 227 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ 227 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC
Confidence 999999742 14578889999999999999876 677899999999999999995 8999999
Q ss_pred CCcEEEEeCC-Cc---EEEEe--ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 340 NRTVAVWNFR-GE---LVTSF--EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 340 D~TIklWd~~-G~---ll~tl--~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|++|+|||++ ++ ....+ .+|..+ |++++|+|||++||+++. |++|+||+..
T Consensus 228 D~~v~iWd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~las~~~-----------D~~v~lw~~~ 284 (297)
T 2pm7_B 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKEN 284 (297)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEET-----------TSCEEEEEEC
T ss_pred CCcEEEEEeCCCCCccceeeeecccCCCc-----EEEEEECCCCCEEEEEcC-----------CCcEEEEEEC
Confidence 9999999985 32 23344 466655 999999999999999997 7999999976
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-40 Score=356.38 Aligned_cols=309 Identities=10% Similarity=0.029 Sum_probs=229.0
Q ss_pred cceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
..|.+|+++ |++||+++.|+||+ +.++++ ++.+ |...|++|+|+|||. + +++++|
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~g-h~~~v~~V~FsPdg~----------~-------~~~~~~ 72 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINC-NSKNLFHVKEFPLEF----------E-------NKLDFE 72 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSS-BGGGTEEEEEECCCC----------C-------CTTTTS
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccccc---eecC-CCccEEEEEECCCCC----------c-------ceEEEE
Confidence 457777777 99999999999999 755555 4455 888999999999991 2 244444
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC------cEEEEEEcCCceE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQEIKISPGIML 247 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~------~V~~VafSpg~~l 247 (485)
+ ++.. .+++..+..++..|+|| |||++||+++.|++|+|||.++ ++.++..+ .|.+|+|||++.+
T Consensus 73 ~---~~~~---~~~~~~~~~~V~~vawS-PdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~ 143 (588)
T 2j04_A 73 L---AQQN---GLLNSQPVCYPRVCKPS-PIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESS 143 (588)
T ss_dssp C---CCSS---CSSTTSCSCCEEEEEEC-SSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSC
T ss_pred e---CCCc---eEeecCCCCcEEEEEEC-CCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCE
Confidence 4 3321 13332234678899998 7999999999999999999655 66665522 3999999997777
Q ss_pred EEEEcCCCCeeEEEEecCCCe-------EEEEe----ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE---
Q 011452 248 LIFTKASGHVPLKILSIEDGT-------VLKSF----NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT--- 313 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~-------~L~tl----~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~--- 313 (485)
+++++. |++|+|||+++|+ .++++ .+|...|.+|+|+ |++ +++++.|++|||||+.++++.
T Consensus 144 LAsgs~--DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS-Pdg--Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 144 IVVGNE--DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY-EDV--LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp EEEEET--TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE-TTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred EEEEcC--CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEc-CCc--EEEEeCCCeEEEEECCCCccccce
Confidence 766554 5899999999986 47888 6777899999998 555 888999999999999988843
Q ss_pred Eec-ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEee-cCCCCCCCCCeeEEEE--CCCCCEEEEEecCCCC
Q 011452 314 EVS-RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIYI--TSDQDLIISYCKADSD 389 (485)
Q Consensus 314 ~~l-~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~-gH~~~~~~~~v~svaf--SpDG~~LaS~s~d~~~ 389 (485)
+++ .+|...|.+++|+ |+.||+++|++|+|||+.+..+.++. ||... |++|+| +|||+.|++++.
T Consensus 219 ~tL~~~h~~~V~svaFs--g~~LASa~~~tIkLWd~~~~~~~~~~~gh~~~-----V~~va~~~s~d~~~La~a~e---- 287 (588)
T 2j04_A 219 RMIQNASRRKITDLKIV--DYKVVLTCPGYVHKIDLKNYSISSLKTGSLEN-----FHIIPLNHEKESTILLMSNK---- 287 (588)
T ss_dssp EEEECCCSSCCCCEEEE--TTEEEEECSSEEEEEETTTTEEEEEECSCCSC-----CCEEEETTCSSCEEEEECSS----
T ss_pred eeecccccCcEEEEEEE--CCEEEEEeCCeEEEEECCCCeEEEEEcCCCce-----EEEEEeeeCCCCCEEEEEcC----
Confidence 566 4888999999999 68999999999999999855553444 89987 999999 999999999986
Q ss_pred CCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC
Q 011452 390 DPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN 469 (485)
Q Consensus 390 d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~ 469 (485)
||+ |||.... ++ +..... . .|.. ++....|+..... +. .. ++...|++|+|||||+
T Consensus 288 -------dG~-klw~~d~---~~-~spd~~--l--~a~~--d~~v~lW~~~g~~----l~-~~-~~~~~I~~va~SPdG~ 343 (588)
T 2j04_A 288 -------TSY-KVLLEDE---LH-VTADNI--I--APYL--EKKFKKWSTIWNE----FN-NY-ETTLVIHGISLSPDGY 343 (588)
T ss_dssp -------CEE-EEEESSS---EE-EECCCS--S--HHHH--HHHHHHTTTTTTS----SS-SS-CCEEEEEEEEECTTSS
T ss_pred -------CCC-EEEeecc---EE-ECCCce--E--EEEc--CCEEEEEECCCCc----ee-ee-ccceEEEEEEECCCCC
Confidence 799 9999762 33 333220 0 0110 2222223221100 00 00 1123699999999999
Q ss_pred EEEEecC
Q 011452 470 EIYTGNR 476 (485)
Q Consensus 470 ~LaSgs~ 476 (485)
+||+++.
T Consensus 344 ~lA~~~~ 350 (588)
T 2j04_A 344 SIAIVYD 350 (588)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999984
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=318.38 Aligned_cols=284 Identities=8% Similarity=0.077 Sum_probs=229.5
Q ss_pred eEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc
Q 011452 98 IIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 98 V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~ 177 (485)
+..+.++++.+++++.||++++|+..+|+.+..+...|...|.+|+|+|+|+.|++++. | ++++||++.+
T Consensus 96 ~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----d------g~i~iwd~~~ 165 (401)
T 4aez_A 96 LNLLDWSNLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG----N------GLVDIYDVES 165 (401)
T ss_dssp CBCEEECTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET----T------SCEEEEETTT
T ss_pred EEEEeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC----C------CeEEEEECcC
Confidence 44456667778999999999999999999999888878889999999999999999774 3 4899999988
Q ss_pred CCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCeEEEEEc--CCcEEEEEEcCCceEEEEEcCC
Q 011452 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS--DKNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 178 G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~ 254 (485)
++... .+. .+...+..++|+ +.+|++++.|++|++||+. .+..+.++. ...|.+++|+|++.++++++
T Consensus 166 ~~~~~---~~~-~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-- 236 (401)
T 4aez_A 166 QTKLR---TMA-GHQARVGCLSWN---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG-- 236 (401)
T ss_dssp CCEEE---EEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE--
T ss_pred CeEEE---Eec-CCCCceEEEEEC---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe--
Confidence 87622 232 344556688885 5799999999999999998 455666664 46899999999776666654
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-Ee--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCC
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd 331 (485)
.|++|++||+.+++++.++.+|...+..++|+ |++..+++ ++ .|++|++||+++++++..+. |...|.+++|+|+
T Consensus 237 ~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~ 314 (401)
T 4aez_A 237 NDNVVQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPH 314 (401)
T ss_dssp TTSCEEEEETTCSSEEEEECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSS
T ss_pred CCCeEEEccCCCCCccEEecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCC
Confidence 34899999999999999999999999999997 55555555 44 79999999999999999885 5568999999999
Q ss_pred CcEEEE--Ee-CCcEEEEeCC-CcEEE--EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 332 NQLFLT--FR-NRTVAVWNFR-GELVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 332 g~llaS--~s-D~TIklWd~~-G~ll~--tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
+++|++ ++ |++|+|||+. +++.. .+.+|... |..++|+|||++|++++. ||+|+|||+
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~-----v~~~~~s~dg~~l~s~~~-----------dg~i~iw~~ 378 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTR-----VLYSALSPDGRILSTAAS-----------DENLKFWRV 378 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSC-----CCEEEECTTSSEEEEECT-----------TSEEEEEEC
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCC-----EEEEEECCCCCEEEEEeC-----------CCcEEEEEC
Confidence 999999 55 9999999995 66544 47799877 999999999999999987 799999999
Q ss_pred CCCeEEEEecCCC
Q 011452 406 LTGKCLAKIRASN 418 (485)
Q Consensus 406 ~TGk~l~tl~gH~ 418 (485)
.+|+++.++..+.
T Consensus 379 ~~~~~~~~~~~~~ 391 (401)
T 4aez_A 379 YDGDHVKRPIPIT 391 (401)
T ss_dssp CC-----------
T ss_pred CCCcccccccccc
Confidence 9999998776554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=343.85 Aligned_cols=285 Identities=12% Similarity=0.092 Sum_probs=243.6
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
..+++.+ |.+.|.+++|||+|+.||+++. + ++++||++.+|+... .+. .+...+..++|+ |+|+
T Consensus 5 ~~~~~~~-h~~~v~~i~~sp~~~~la~~~~----~------g~v~iwd~~~~~~~~---~~~-~~~~~v~~~~~s-~~~~ 68 (814)
T 3mkq_A 5 IKKTFSN-RSDRVKGIDFHPTEPWVLTTLY----S------GRVEIWNYETQVEVR---SIQ-VTETPVRAGKFI-ARKN 68 (814)
T ss_dssp CEEEEEE-ECSCEEEEEECSSSSEEEEEET----T------SEEEEEETTTTEEEE---EEE-CCSSCEEEEEEE-GGGT
T ss_pred cceeeec-CCCceEEEEECCCCCEEEEEeC----C------CEEEEEECCCCceEE---EEe-cCCCcEEEEEEe-CCCC
Confidence 3456766 8889999999999999999773 3 599999998887622 233 244567789998 7999
Q ss_pred EEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCC-eEEEEeecCCcceeEE
Q 011452 207 VLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKV 283 (485)
Q Consensus 207 ~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG-~~L~tl~~~~~~~~~V 283 (485)
+||+++.|++|+|||+.+++++.++. ...|.+++|||++.++++++ .|++|++||++++ .+...+.+|.+.+..+
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~ 146 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEE--TTSEEEEEEGGGTSEEEEEEECCSSCEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEc--CCCEEEEEECCCCceEEEEEcCCCCcEEEE
Confidence 99999999999999999999988885 45899999999776555544 3589999999998 7888999999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-CceEEEEEcC--CCcEEEEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-MTPSAFIFLY--ENQLFLTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~v~avaFsp--dg~llaS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
+|++.++..+++++.|++|++||+.+++....+..|. ..+..++|+| ++++|++++ |++|++||++ ++++.++.+
T Consensus 147 ~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~ 226 (814)
T 3mkq_A 147 AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226 (814)
T ss_dssp EEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcC
Confidence 9984367788889999999999999988877776554 8999999999 999999999 9999999996 999999999
Q ss_pred CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 359 HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|... |..++|+|||++|++++. ||+|++||+.+++++.++..|..
T Consensus 227 ~~~~-----v~~~~~~~~~~~l~~~~~-----------dg~v~vwd~~~~~~~~~~~~~~~------------------- 271 (814)
T 3mkq_A 227 HMSN-----VSFAVFHPTLPIIISGSE-----------DGTLKIWNSSTYKVEKTLNVGLE------------------- 271 (814)
T ss_dssp CSSC-----EEEEEECSSSSEEEEEET-----------TSCEEEEETTTCSEEEEECCSSS-------------------
T ss_pred CCCC-----EEEEEEcCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEeecCCC-------------------
Confidence 9877 999999999999999987 79999999999999999998862
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCC--EEEEecCCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRN--EIYTGNRHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~--~LaSgs~DgtVklWd 484 (485)
.|++++|+|+|+ .+++|+ |+.+.+|+
T Consensus 272 -------------------~v~~~~~~~~~~~~~~~~~~-~~~~~~~~ 299 (814)
T 3mkq_A 272 -------------------RSWCIATHPTGRKNYIASGF-DNGFTVLS 299 (814)
T ss_dssp -------------------SEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred -------------------cEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence 889999999987 456555 55566765
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=318.83 Aligned_cols=259 Identities=11% Similarity=0.081 Sum_probs=201.1
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC-CCeEE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV-NGKVL 208 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~L 208 (485)
++..+|...|++|+|+|+|++||++|. | ++++||++..|+... ...+. +|...+..|+|++| +|++|
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~----D------~~v~lwd~~~~~~~~-~~~l~-gH~~~V~~v~~~~~~~~~~l 74 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSS----D------RSVKIFDVRNGGQIL-IADLR-GHEGPVWQVAWAHPMYGNIL 74 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEET----T------TEEEEEEEETTEEEE-EEEEE-CCSSCEEEEEECCGGGSSCE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeC----C------CeEEEEEecCCCcEE-EEEEc-CCCccEEEEEeCCCCCCCEE
Confidence 344458999999999999999999874 4 599999998775311 01122 35567789999754 59999
Q ss_pred EEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCeE---EEEeecCCcc
Q 011452 209 TYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTV---LKSFNHLLHR 279 (485)
Q Consensus 209 as~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~~---L~tl~~~~~~ 279 (485)
+|++.|++|||||+.+++ ++.++. ...|.+|+|+|+ +.++++++ .|++|+|||+.++.. ++.+.+|...
T Consensus 75 ~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs--~D~~i~lwd~~~~~~~~~~~~~~~h~~~ 152 (316)
T 3bg1_A 75 ASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGS--SDGAISLLTYTGEGQWEVKKINNAHTIG 152 (316)
T ss_dssp EEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEEC--SSSCEEEEEECSSSCEEECCBTTSSSSC
T ss_pred EEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEc--CCCCEEEEecCCCCCcceeeeeccccCC
Confidence 999999999999999874 666764 458999999985 55555544 458999999988732 4566788888
Q ss_pred eeEEEEEecC----------------CCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEEEcCCC----cEEE
Q 011452 280 NKKVDFIEQF----------------NEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYEN----QLFL 336 (485)
Q Consensus 280 ~~~V~f~~~~----------------~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg----~lla 336 (485)
+..++|++.. +..|++++.|++|||||++++ +++.++.+|...|++++|+|++ ++||
T Consensus 153 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~la 232 (316)
T 3bg1_A 153 CNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIA 232 (316)
T ss_dssp BCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEE
T ss_pred cceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEE
Confidence 9999997421 357888899999999999865 5788899999999999999997 8999
Q ss_pred EEe-CCcEEEEeCCC----c-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CC-
Q 011452 337 TFR-NRTVAVWNFRG----E-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL-TG- 408 (485)
Q Consensus 337 S~s-D~TIklWd~~G----~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TG- 408 (485)
|++ |++|+|||++. + ....+.+|..+ |++++|+|||++||+++. |++|+||+.. .|
T Consensus 233 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~-----v~~v~~sp~g~~las~~~-----------D~~v~lw~~~~~g~ 296 (316)
T 3bg1_A 233 SCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV-----VWHVSWSITANILAVSGG-----------DNKVTLWKESVDGQ 296 (316)
T ss_dssp EEETTCEEEEEECSSTTCCCCBCCEEEECSSC-----EEEEEECTTTCCEEEEES-----------SSCEEEEEECTTSC
T ss_pred EEcCCCeEEEEEccCccccchhhhhhhcCCCc-----EEEEEEcCCCCEEEEEcC-----------CCeEEEEEECCCCc
Confidence 999 99999999852 1 23456778766 999999999999999997 7999999975 34
Q ss_pred -eEEEEecCCC
Q 011452 409 -KCLAKIRASN 418 (485)
Q Consensus 409 -k~l~tl~gH~ 418 (485)
+|+.++...+
T Consensus 297 ~~~~~~~~~~~ 307 (316)
T 3bg1_A 297 WVCISDVNKGQ 307 (316)
T ss_dssp EEEEEECC---
T ss_pred EEEeeeccCCC
Confidence 6788887654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=315.53 Aligned_cols=273 Identities=13% Similarity=0.142 Sum_probs=228.6
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEE
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiK 218 (485)
+.++.|++ +.|++++. | ++++||++.+|++. .++...+...+..|+|+ |+|++|++++.|++|+
T Consensus 96 ~~~~~~s~--~~l~~~~~----d------~~v~lw~~~~~~~~---~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~ 159 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVAL----E------RNVYVWNADSGSVS---ALAETDESTYVASVKWS-HDGSFLSVGLGNGLVD 159 (401)
T ss_dssp CBCEEECT--TSEEEEEE----T------TEEEEEETTTCCEE---EEEECCTTCCEEEEEEC-TTSSEEEEEETTSCEE
T ss_pred EEEEeecC--CCEEEEEC----C------CeEEEeeCCCCcEe---EeeecCCCCCEEEEEEC-CCCCEEEEECCCCeEE
Confidence 44566665 45677663 3 49999999998873 34444345667799998 7999999999999999
Q ss_pred EeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC-CCeEEEEeecCCcceeEEEEEecCCCEEEE
Q 011452 219 VFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQFNEKLLV 295 (485)
Q Consensus 219 lWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~-tG~~L~tl~~~~~~~~~V~f~~~~~~~lls 295 (485)
|||+.+++++.++. ...|.+++|++. .++++ + .|++|++||+. .++.+.++.+|...+..++|+ |++..|++
T Consensus 160 iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~l~~~-~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s 234 (401)
T 4aez_A 160 IYDVESQTKLRTMAGHQARVGCLSWNRH-VLSSG-S--RSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR-SDGLQLAS 234 (401)
T ss_dssp EEETTTCCEEEEECCCSSCEEEEEEETT-EEEEE-E--TTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC-TTSSEEEE
T ss_pred EEECcCCeEEEEecCCCCceEEEEECCC-EEEEE-c--CCCCEEEEecccCcceeeEEcCCCCCeeEEEEc-CCCCEEEE
Confidence 99999999998886 458999999653 44444 3 45899999999 677899999999999999997 57889999
Q ss_pred EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC-cEEEEEe---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeE
Q 011452 296 KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFR---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN 370 (485)
Q Consensus 296 ~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg-~llaS~s---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~s 370 (485)
++.|++|+|||+++++++..+.+|...|.+++|+|++ .++++++ |++|++||++ ++++.++..+ .. |.+
T Consensus 235 ~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~-~~-----v~~ 308 (401)
T 4aez_A 235 GGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG-SQ-----VTS 308 (401)
T ss_dssp EETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS-SC-----EEE
T ss_pred EeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC-Cc-----EEE
Confidence 9999999999999999999999999999999999976 5677753 9999999996 9999999744 34 899
Q ss_pred EEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE--ecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 371 IYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK--IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 371 vafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t--l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
++|+|+|++|++++. +.||+|+|||+.++++... +.+|..
T Consensus 309 ~~~s~~~~~l~~~~g---------~~dg~i~v~~~~~~~~~~~~~~~~h~~----------------------------- 350 (401)
T 4aez_A 309 LIWSPHSKEIMSTHG---------FPDNNLSIWSYSSSGLTKQVDIPAHDT----------------------------- 350 (401)
T ss_dssp EEECSSSSEEEEEEC---------TTTCEEEEEEEETTEEEEEEEEECCSS-----------------------------
T ss_pred EEECCCCCeEEEEee---------cCCCcEEEEecCCccceeEEEecCCCC-----------------------------
Confidence 999999999999652 2379999999999876655 668862
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++++|+|||+.|+||+.||+|++|+.
T Consensus 351 ---------~v~~~~~s~dg~~l~s~~~dg~i~iw~~ 378 (401)
T 4aez_A 351 ---------RVLYSALSPDGRILSTAASDENLKFWRV 378 (401)
T ss_dssp ---------CCCEEEECTTSSEEEEECTTSEEEEEEC
T ss_pred ---------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 8999999999999999999999999984
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=322.07 Aligned_cols=265 Identities=14% Similarity=0.280 Sum_probs=228.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
|...|.++.| +|+.||+++. | +++++|++.+|++.. .+. .+...+.+++| +|++|++|+.|
T Consensus 132 ~~~~v~~~~~--d~~~l~~g~~----d------g~i~iwd~~~~~~~~---~~~-~h~~~v~~l~~---~~~~l~sg~~d 192 (435)
T 1p22_A 132 TSKGVYCLQY--DDQKIVSGLR----D------NTIKIWDKNTLECKR---ILT-GHTGSVLCLQY---DERVIITGSSD 192 (435)
T ss_dssp SCCCEEEEEC--CSSEEEEEES----S------SCEEEEESSSCCEEE---EEC-CCSSCEEEEEC---CSSEEEEEETT
T ss_pred CCCcEEEEEE--CCCEEEEEeC----C------CeEEEEeCCCCeEEE---EEc-CCCCcEEEEEE---CCCEEEEEcCC
Confidence 5567888876 8999999774 3 599999998888632 232 24455667777 57899999999
Q ss_pred CcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE---EEeecCCcceeEEEEEecC
Q 011452 215 SIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL---KSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L---~tl~~~~~~~~~V~f~~~~ 289 (485)
++|+|||+.+++++.++.+ ..|.+++|+++ .++++ + .|++|++||+++++.+ ..+.+|...+..++| +
T Consensus 193 g~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~-s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~ 265 (435)
T 1p22_A 193 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG-MMVTC-S--KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---D 265 (435)
T ss_dssp SCEEEEESSSCCEEEEECCCCSCEEEEECCTT-EEEEE-E--TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---E
T ss_pred CeEEEEECCCCcEEEEEcCCCCcEEEEEEcCC-EEEEe-e--CCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---C
Confidence 9999999999999999864 58999999865 55544 3 4589999999998876 778899899999998 4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
+..+++++.|++|+|||+++++++..+.+|...|.+++| ++++|++++ |++|++||++ |+++.++.+|...
T Consensus 266 ~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----- 338 (435)
T 1p22_A 266 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----- 338 (435)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc-----
Confidence 789999999999999999999999999999999999988 578999999 9999999996 9999999999987
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe---------EEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK---------CLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk---------~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
|.+++| ||++|++|+. ||+|+|||+.+++ ++.++.+|.+
T Consensus 339 v~~~~~--~~~~l~sg~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~------------------- 386 (435)
T 1p22_A 339 VRCIRF--DNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG------------------- 386 (435)
T ss_dssp EEEEEC--CSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-------------------
T ss_pred EEEEEe--cCCEEEEEeC-----------CCcEEEEECCCCCCccccccchheeeccCCCC-------------------
Confidence 999998 8999999997 7999999998887 9999999973
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++++| |++.|+||+.||+|+|||.
T Consensus 387 -------------------~v~~l~~--~~~~l~s~s~Dg~i~iwd~ 412 (435)
T 1p22_A 387 -------------------RVFRLQF--DEFQIVSSSHDDTILIWDF 412 (435)
T ss_dssp -------------------CCCCEEE--CSSCEEECCSSSEEEEEC-
T ss_pred -------------------CeEEEEe--CCCEEEEEeCCCEEEEEEC
Confidence 8899999 7899999999999999984
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=298.35 Aligned_cols=238 Identities=16% Similarity=0.161 Sum_probs=204.2
Q ss_pred ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC--CceEEEEEcCCCCeeEEE
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g----~~l~tl~--~~~V~~VafSp--g~~ll~sss~~~D~tIkl 261 (485)
+|...+..++|+ |+|++||+++.|++|+|||+.++ +++.++. ...|.+|+|+| ++.++++++ .|++|+|
T Consensus 9 gH~~~v~~~~~~-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~--~dg~v~v 85 (351)
T 3f3f_A 9 GHDDLVHDVVYD-FYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS--YDKTVKL 85 (351)
T ss_dssp CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE--TTSCEEE
T ss_pred ccccceeEEEEc-CCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEc--CCCeEEE
Confidence 456678899998 79999999999999999999976 4566664 46899999998 354444544 3589999
Q ss_pred EecCCC---------eEEEEeecCCcceeEEEEEecC--CCEEEEEeCCCcEEEEECCCCeeEEecc-------------
Q 011452 262 LSIEDG---------TVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFELTEVSR------------- 317 (485)
Q Consensus 262 Wdi~tG---------~~L~tl~~~~~~~~~V~f~~~~--~~~lls~s~D~tIkIWDv~tg~~~~~l~------------- 317 (485)
||++++ +++.++.+|...+..++|+ |+ +..+++++.|++|+|||+++++++..+.
T Consensus 86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFA-PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EecCCCcccccccCcceeeeecccCCceeEEEEc-CCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 999998 7799999999999999997 55 7788899999999999999988655443
Q ss_pred cCCCceEEEEEcCC---CcEEEEEe-CCcEEEEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCC----CEEEEEecC
Q 011452 318 TEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQ----DLIISYCKA 386 (485)
Q Consensus 318 gh~~~v~avaFspd---g~llaS~s-D~TIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG----~~LaS~s~d 386 (485)
+|...+.+++|+|+ +++|++++ |+.+.+|+.. ++. +.++.+|... |.+++|+|+| ++|++++.
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----i~~~~~~p~~~~~~~~l~s~~~- 238 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL-----IRSISWAPSIGRWYQLIATGCK- 238 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC-----EEEEEECCCSSCSSEEEEEEET-
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc-----eeEEEECCCCCCcceEEEEEcC-
Confidence 78899999999998 99999999 9999888875 664 8889999887 9999999999 89999987
Q ss_pred CCCCCCCcCCCCeEEEEeCCCC----------------------------------------------eEEEEecCCCCC
Q 011452 387 DSDDPLAEGNAGSINISNILTG----------------------------------------------KCLAKIRASNGL 420 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TG----------------------------------------------k~l~tl~gH~~~ 420 (485)
||+|+|||+.++ +++.++.+|.
T Consensus 239 ----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-- 306 (351)
T 3f3f_A 239 ----------DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN-- 306 (351)
T ss_dssp ----------TSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS--
T ss_pred ----------CCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc--
Confidence 799999999876 5666666665
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|++|+|+|||+.||||+.||+|+||+.
T Consensus 307 ------------------------------------~~v~~~~~s~~~~~l~s~~~dg~v~iw~~ 335 (351)
T 3f3f_A 307 ------------------------------------GEVWSVSWNLTGTILSSAGDDGKVRLWKA 335 (351)
T ss_dssp ------------------------------------SCEEEEEECSSSCCEEEEETTSCEEEEEE
T ss_pred ------------------------------------ccEEEEEEcCCCCEEEEecCCCcEEEEec
Confidence 38999999999999999999999999983
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=321.29 Aligned_cols=244 Identities=11% Similarity=0.070 Sum_probs=191.8
Q ss_pred cccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccC--cEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 75 EYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETN--QRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG--~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.+..|+.++.++.|+|. +++||+++.||++++|++.++ +++.++.+ |...|.+++|+|+|+.||
T Consensus 6 ~~~~~~~~v~~~~~s~~-------------g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~ 71 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-------------RTEFVTTTATNQVELYEQDGNGWKHARTFSD-HDKIVTCVDWAPKSNRIV 71 (377)
T ss_dssp EEEECSSCCSCCEECSS-------------SSEEECCCSSSCBCEEEEETTEEEECCCBCC-CSSCEEEEEECTTTCCEE
T ss_pred eEecCCCcEEEEEECCC-------------CCEEEEecCCCEEEEEEccCCceEEEEEEec-CCceEEEEEEeCCCCEEE
Confidence 44445556666666666 999999999999999999988 78888887 888999999999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCC-cCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGK-PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---ML 228 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~-~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l 228 (485)
+++. | ++++||++..++ +.....+. .+...+..++|+ |+|++|++++.|++|+|||+.+++ ++
T Consensus 72 s~s~----d------~~v~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~ 138 (377)
T 3dwl_C 72 TCSQ----D------RNAYVYEKRPDGTWKQTLVLL--RLNRAATFVRWS-PNEDKFAVGSGARVISVCYFEQENDWWVS 138 (377)
T ss_dssp EEET----T------SSEEEC------CCCCEEECC--CCSSCEEEEECC-TTSSCCEEEESSSCEEECCC-----CCCC
T ss_pred EEeC----C------CeEEEEEcCCCCceeeeeEec--ccCCceEEEEEC-CCCCEEEEEecCCeEEEEEECCcccceee
Confidence 9874 4 589999998887 21111111 244567789998 799999999999999999999887 36
Q ss_pred EEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC------------------CCeEEEEeecCCcceeEEEEEe
Q 011452 229 YSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIE------------------DGTVLKSFNHLLHRNKKVDFIE 287 (485)
Q Consensus 229 ~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~------------------tG~~L~tl~~~~~~~~~V~f~~ 287 (485)
..+. ...|.+++|+|++.++++++. |++|+|||++ +|+++.++ +|...+..++|+
T Consensus 139 ~~~~~~h~~~v~~~~~~~~~~~l~~~~~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s- 214 (377)
T 3dwl_C 139 KHLKRPLRSTILSLDWHPNNVLLAAGCA--DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFS- 214 (377)
T ss_dssp EEECSSCCSCEEEEEECTTSSEEEEEES--SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEEC-
T ss_pred eEeecccCCCeEEEEEcCCCCEEEEEeC--CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEEC-
Confidence 6664 458999999997766666544 4899999995 57888889 899999999997
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCee----EEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC
Q 011452 288 QFNEKLLVKQENENLQILDVRNFEL----TEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR 349 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~----~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~ 349 (485)
|++..|++++.|++|+|||++++++ +..+.+|...|.+++|+|||++|++++|+.+.+|+..
T Consensus 215 p~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 215 PSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred CCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 7788999999999999999999988 8889999999999999999999999994444477763
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-38 Score=320.46 Aligned_cols=276 Identities=11% Similarity=0.136 Sum_probs=227.6
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
+...|..+.+.+++||+++.||+|++||..+++++.++.+ |...|.++.| +++.||+++. | +++++|
T Consensus 132 ~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~--~~~~l~sg~~----d------g~i~vw 198 (435)
T 1p22_A 132 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGSS----D------STVRVW 198 (435)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEET----T------SCEEEE
T ss_pred CCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcC-CCCcEEEEEE--CCCEEEEEcC----C------CeEEEE
Confidence 4567999999999999999999999999999999999987 8889999999 8899999774 4 599999
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE---EEEc--CCcEEEEEEcCCceEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l---~tl~--~~~V~~VafSpg~~ll 248 (485)
++.+|++.. .+. .+...+..++|+ +..|++++.|++|++||+.+++.+ ..+. ...|.+++| .+..++
T Consensus 199 d~~~~~~~~---~~~-~h~~~v~~l~~~---~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~ 270 (435)
T 1p22_A 199 DVNTGEMLN---TLI-HHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIV 270 (435)
T ss_dssp ESSSCCEEE---EEC-CCCSCEEEEECC---TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEE
T ss_pred ECCCCcEEE---EEc-CCCCcEEEEEEc---CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEE
Confidence 999998732 222 244556678885 358999999999999999987744 4443 458999999 445555
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
++ + .|++|++||+++++++.++.+|...+..++|. +..+++++.|++|+|||+++++++.++.+|...|.+++|
T Consensus 271 s~-~--~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~ 344 (435)
T 1p22_A 271 SA-S--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF 344 (435)
T ss_dssp EE-E--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC
T ss_pred EE-e--CCCeEEEEECCcCcEEEEEcCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe
Confidence 44 3 35899999999999999999999999999884 678999999999999999999999999999999999988
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC-Cc---------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR-GE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~-G~---------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
++++|++++ |++|++||++ ++ ++.++.+|... |.+++| ||++|+|++. |
T Consensus 345 --~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~--~~~~l~s~s~-----------D 404 (435)
T 1p22_A 345 --DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------D 404 (435)
T ss_dssp --CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------S
T ss_pred --cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCC-----eEEEEe--CCCEEEEEeC-----------C
Confidence 899999999 9999999995 66 89999999987 899999 8899999986 7
Q ss_pred CeEEEEeCCCCeEEEEecC
Q 011452 398 GSINISNILTGKCLAKIRA 416 (485)
Q Consensus 398 gtIklWdl~TGk~l~tl~g 416 (485)
|+|+|||+.++........
T Consensus 405 g~i~iwd~~~~~~~~~~~~ 423 (435)
T 1p22_A 405 DTILIWDFLNDPAAQAEPP 423 (435)
T ss_dssp SEEEEEC------------
T ss_pred CEEEEEECCCCCCcccCCC
Confidence 9999999998776655443
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-37 Score=312.39 Aligned_cols=282 Identities=15% Similarity=0.235 Sum_probs=235.3
Q ss_pred eecccCcEEEEeecCCcc-cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEE
Q 011452 120 FCRETNQRICFLNVTADE-VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV 198 (485)
Q Consensus 120 W~~~tG~~l~tl~g~~~~-~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V 198 (485)
|....-+....+.+ |.+ .+.+ ++++|+.|++++. | +++++|++.+|++.. .+. .+...+..+
T Consensus 103 w~~~~~~~~~~l~~-h~~~v~~~--~~~~g~~l~sg~~----d------g~i~vwd~~~~~~~~---~~~-~h~~~v~~~ 165 (445)
T 2ovr_B 103 WRRGELKSPKVLKG-HDDHVITC--LQFCGNRIVSGSD----D------NTLKVWSAVTGKCLR---TLV-GHTGGVWSS 165 (445)
T ss_dssp HHHSCCCCCEEEEC-STTSCEEE--EEEETTEEEEEET----T------SCEEEEETTTCCEEE---ECC-CCSSCEEEE
T ss_pred ccCCCcceeEEecc-cCCCcEEE--EEEcCCEEEEEEC----C------CcEEEEECCCCcEEE---EEc-CCCCCEEEE
Confidence 54443445667777 555 4554 5567999999774 4 599999999888632 222 345567788
Q ss_pred EEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC
Q 011452 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (485)
Q Consensus 199 ~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~ 276 (485)
+|+ +.+|++++.|++|++||+.+++++.++.+ ..|.+++|+++ .++++ + .|++|++||+++|+++.++.+|
T Consensus 166 ~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~-~l~s~-s--~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 166 QMR---DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEK-RVVSG-S--RDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp EEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETT-EEEEE-E--TTSEEEEEESSSCCEEEEEECC
T ss_pred Eec---CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCC-EEEEE-e--CCCEEEEEECCCCcEEEEEcCC
Confidence 996 56999999999999999999999999864 57999999754 44444 3 4589999999999999999999
Q ss_pred CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE
Q 011452 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT 354 (485)
Q Consensus 277 ~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~ 354 (485)
...+..++| ++..+++++.|++|++||+++++++..+.+|...|.+++| ++++|++++ |++|++||++ ++++.
T Consensus 239 ~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~ 313 (445)
T 2ovr_B 239 VAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH 313 (445)
T ss_dssp SSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred cccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE
Confidence 999999988 5788999999999999999999999999999999999999 899999999 9999999996 99999
Q ss_pred EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCC
Q 011452 355 SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSS 434 (485)
Q Consensus 355 tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~ 434 (485)
++.+|... +..+.+ ++++|++++. ||+|++||+.+|+++.++.+|..
T Consensus 314 ~~~~~~~~-----v~~~~~--~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~--------------- 360 (445)
T 2ovr_B 314 TLTGHQSL-----TSGMEL--KDNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNK--------------- 360 (445)
T ss_dssp EECCCCSC-----EEEEEE--ETTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTS---------------
T ss_pred EEcCCccc-----EEEEEE--eCCEEEEEeC-----------CCeEEEEECCCCcEEEEEccCCC---------------
Confidence 99999876 776665 6789999987 79999999999999999998541
Q ss_pred CCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 435 GSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
| ...|++++|+ ++.|++|+.||+|+|||.
T Consensus 361 -------~-------------~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 361 -------H-------------QSAVTCLQFN--KNFVITSSDDGTVKLWDL 389 (445)
T ss_dssp -------C-------------SSCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred -------C-------------CCCEEEEEEC--CCEEEEEeCCCeEEEEEC
Confidence 0 0289999996 589999999999999984
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-37 Score=291.75 Aligned_cols=256 Identities=13% Similarity=0.164 Sum_probs=209.9
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc-cceeeeccccCceEEEEeCC-CCeEEEE
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-FALFESESLKWPGFVEFDDV-NGKVLTY 210 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~-~~lf~~~~~~~~~~V~Fs~p-nG~~Las 210 (485)
.+|.+.|.+++|+|+|+.||+++. | ++++||++..+..... ...+. .+...+..++|++. ||++|++
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~----d------g~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s 76 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSS----D------QHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIAS 76 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEET----T------SEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeC----C------CeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEE
Confidence 348999999999999999999773 4 5999999976643110 11122 34556778999833 6999999
Q ss_pred eeCCCcEEEeecCCC---------eEEEEEc--CCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCeEEEEee---
Q 011452 211 SAQDSIYKVFDLKNY---------TMLYSIS--DKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFN--- 274 (485)
Q Consensus 211 ~s~D~tiKlWdl~~g---------~~l~tl~--~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~~L~tl~--- 274 (485)
++.|++|+|||+.++ +++.++. ...|.+++|+|+ +.++++++ .|++|+|||+.+++++.++.
T Consensus 77 ~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~ 154 (351)
T 3f3f_A 77 ASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTS 154 (351)
T ss_dssp EETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEE
T ss_pred EcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhccccccc
Confidence 999999999999987 5677775 468999999986 66555544 35899999999998776554
Q ss_pred ----------cCCcceeEEEEEec--CCCEEEEEeCCCcEEEEECCCCee--EEecccCCCceEEEEEcCCC----cEEE
Q 011452 275 ----------HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYEN----QLFL 336 (485)
Q Consensus 275 ----------~~~~~~~~V~f~~~--~~~~lls~s~D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg----~lla 336 (485)
+|...+..++|++. .+..+++++.|+.+.+|+..+++. +..+.+|...|.+++|+|++ ++|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~ 234 (351)
T 3f3f_A 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIA 234 (351)
T ss_dssp EEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEE
T ss_pred cccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEE
Confidence 57778889999742 378888899999999999988875 77888999999999999999 8999
Q ss_pred EEe-CCcEEEEeCC-C----------------------------------------------cEEEEeecCCCCCCCCCe
Q 011452 337 TFR-NRTVAVWNFR-G----------------------------------------------ELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 337 S~s-D~TIklWd~~-G----------------------------------------------~ll~tl~gH~~~~~~~~v 368 (485)
+++ |++|++||++ + +++.++.+|... |
T Consensus 235 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v 309 (351)
T 3f3f_A 235 TGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGE-----V 309 (351)
T ss_dssp EEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSC-----E
T ss_pred EEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccccc-----E
Confidence 999 9999999996 4 788899999877 9
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC---eEEEEecCC
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG---KCLAKIRAS 417 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG---k~l~tl~gH 417 (485)
++++|+|||++|||++. ||+|+|||+.++ +|+.++..|
T Consensus 310 ~~~~~s~~~~~l~s~~~-----------dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 310 WSVSWNLTGTILSSAGD-----------DGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEEEECSSSCCEEEEET-----------TSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEEEEcCCCCEEEEecC-----------CCcEEEEecCcCcchhheeehccc
Confidence 99999999999999997 799999999988 466666665
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=293.36 Aligned_cols=275 Identities=12% Similarity=0.112 Sum_probs=226.0
Q ss_pred CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
.++++++.|+++++||.++|+++.++.+ |. .+.+++|+|+|+.|+.++ +.+ +++++|++.+|++. .
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dg~~l~~~~---~~d------~~i~v~d~~~~~~~---~ 68 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTATIPV-GS-NPMGAVISPDGTKVYVAN---AHS------NDVSIIDTATNNVI---A 68 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEEC-SS-SEEEEEECTTSSEEEEEE---GGG------TEEEEEETTTTEEE---E
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEEeec-CC-CcceEEECCCCCEEEEEC---CCC------CeEEEEECCCCeEE---E
Confidence 4688999999999999999999998876 54 489999999999874433 123 59999999888862 2
Q ss_pred eeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEEcCCCCeeEEEE
Q 011452 186 LFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM-LLIFTKASGHVPLKIL 262 (485)
Q Consensus 186 lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~-ll~sss~~~D~tIklW 262 (485)
.+.. -..+..++|+ |+|+.| ++++.|++|++||+.+++++..+. ...+.+++|+|++. ++++++ .|++|++|
T Consensus 69 ~~~~--~~~v~~~~~s-pdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~v~~~ 143 (391)
T 1l0q_A 69 TVPA--GSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNN--GDKTVSVI 143 (391)
T ss_dssp EEEC--SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET--TTTEEEEE
T ss_pred EEEC--CCCccceEEC-CCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeC--CCCEEEEE
Confidence 3332 2367789998 789876 556678999999999999988876 45899999998665 435543 45899999
Q ss_pred ecCCCeEEEEeecCCcceeEEEEEecCCCEEEE-EeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--
Q 011452 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-- 339 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls-~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-- 339 (485)
|+.+|+++..+..+ ..+..++|+ |++..|++ ++.|++|++||+++++++..+. |...+.+++|+|+|++|++++
T Consensus 144 d~~~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~ 220 (391)
T 1l0q_A 144 NTVTKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVD 220 (391)
T ss_dssp ETTTTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEEC
T ss_pred ECCCCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecC
Confidence 99999999999865 456889986 67777754 5689999999999999988885 456899999999999888775
Q ss_pred --CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 340 --NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 340 --D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
|++|++||++ ++++.++..|.. +..++|+|||++| ++++. |++|++||+.+|++++++.
T Consensus 221 ~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~s~~~-----------d~~v~v~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 221 KYFNTVSMIDTGTNKITARIPVGPD------PAGIAVTPDGKKVYVALSF-----------XNTVSVIDTATNTITATMA 283 (391)
T ss_dssp SSCCEEEEEETTTTEEEEEEECCSS------EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEEEEECCCCeEEEEEecCCC------ccEEEEccCCCEEEEEcCC-----------CCEEEEEECCCCcEEEEEE
Confidence 7899999996 999999988752 6899999999988 55554 7999999999999999999
Q ss_pred CCCC
Q 011452 416 ASNG 419 (485)
Q Consensus 416 gH~~ 419 (485)
.|..
T Consensus 284 ~~~~ 287 (391)
T 1l0q_A 284 VGKN 287 (391)
T ss_dssp CSSS
T ss_pred CCcC
Confidence 8864
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=297.98 Aligned_cols=237 Identities=13% Similarity=0.172 Sum_probs=201.9
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecC--CCeEEEEEcC--CcEEEEEEcCC--ceEEEEEcCCCCeeEEEEec
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD--KNVQEIKISPG--IMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~--~g~~l~tl~~--~~V~~VafSpg--~~ll~sss~~~D~tIklWdi 264 (485)
|...+..++|+ |+|++||+++.|++|+|||+. +++++.++.+ ..|.+|+|+|+ +.++++++ .|++|+|||+
T Consensus 10 h~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~--~dg~v~iwd~ 86 (379)
T 3jrp_A 10 HNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKE 86 (379)
T ss_dssp CCCCEEEEEEC-SSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSCEEEEEE
T ss_pred CcccEEEEEEc-CCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEec--cCCEEEEEEc
Confidence 56678899998 799999999999999999998 5567777754 58999999954 55555544 3589999999
Q ss_pred CCCe--EEEEeecCCcceeEEEEEecC--CCEEEEEeCCCcEEEEECCCCe--eEEecccCCCceEEEEEcC--------
Q 011452 265 EDGT--VLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFE--LTEVSRTEFMTPSAFIFLY-------- 330 (485)
Q Consensus 265 ~tG~--~L~tl~~~~~~~~~V~f~~~~--~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~v~avaFsp-------- 330 (485)
++|+ ++..+.+|...+..++|+ |+ +..+++++.|++|+|||+++++ ....+.+|...|.+++|+|
T Consensus 87 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 165 (379)
T 3jrp_A 87 ENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 165 (379)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC------
T ss_pred CCCceeEeeeecCCCcceEEEEeC-CCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccccc
Confidence 9998 788899999999999997 55 7788999999999999999883 4556678999999999999
Q ss_pred -----CCcEEEEEe-CCcEEEEeCC-Cc----EEEEeecCCCCCCCCCeeEEEECCC---CCEEEEEecCCCCCCCCcCC
Q 011452 331 -----ENQLFLTFR-NRTVAVWNFR-GE----LVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 331 -----dg~llaS~s-D~TIklWd~~-G~----ll~tl~gH~~~~~~~~v~svafSpD---G~~LaS~s~d~~~d~~~~~~ 396 (485)
++++|++++ |++|+|||++ ++ ++.++.+|... |.+++|+|| |++|++++.
T Consensus 166 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~-----v~~~~~sp~~~~~~~l~s~~~----------- 229 (379)
T 3jrp_A 166 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ----------- 229 (379)
T ss_dssp ----CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEET-----------
T ss_pred ccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc-----EeEEEECCCCCCCCeEEEEeC-----------
Confidence 799999999 9999999985 43 67789999887 999999999 999999997
Q ss_pred CCeEEEEeCCCCe---EEEEecC--CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 397 AGSINISNILTGK---CLAKIRA--SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 397 DgtIklWdl~TGk---~l~tl~g--H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
||+|+|||+.+++ ....+.. |. ..|++++|+|||+.|
T Consensus 230 dg~i~iwd~~~~~~~~~~~~~~~~~~~--------------------------------------~~v~~~~~s~~g~~l 271 (379)
T 3jrp_A 230 DRTCIIWTQDNEQGPWKKTLLKEEKFP--------------------------------------DVLWRASWSLSGNVL 271 (379)
T ss_dssp TSCEEEEEESSTTSCCEEEESSSSCCS--------------------------------------SCEEEEEECSSSCCE
T ss_pred CCEEEEEeCCCCCccceeeeeccccCC--------------------------------------CcEEEEEEcCCCCEE
Confidence 7999999999874 2223322 32 289999999999999
Q ss_pred EEecCCCcEEEccC
Q 011452 472 YTGNRHGLVHVWSN 485 (485)
Q Consensus 472 aSgs~DgtVklWd~ 485 (485)
++|+.||+|+||+.
T Consensus 272 ~~~~~dg~i~iw~~ 285 (379)
T 3jrp_A 272 ALSGGDNKVTLWKE 285 (379)
T ss_dssp EEEESSSSEEEEEE
T ss_pred EEecCCCcEEEEeC
Confidence 99999999999983
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=306.89 Aligned_cols=284 Identities=8% Similarity=0.093 Sum_probs=222.5
Q ss_pred cccccceEEEEEe--cCEEEEEeCCCeEEeeecccCc-----------EEEEeecCCc------------ccEEEEEEee
Q 011452 92 LRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ-----------RICFLNVTAD------------EVIRSLFYNK 146 (485)
Q Consensus 92 ~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~-----------~l~tl~g~~~------------~~i~sv~~sp 146 (485)
+-+..+|..|.|+ +++||+++.||+|++|++.+++ ++.++.+ |. ..|.+|.|+|
T Consensus 25 ~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEEC-CCCEEEGGGTEEECCCCCEEEECC
T ss_pred ccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEeccccc-ccccccccccccccCceEEEEEcC
Confidence 4567788888888 9999999999999999999887 5788887 76 7899999999
Q ss_pred CC--CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc------------------------------------cceee
Q 011452 147 NN--DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG------------------------------------FALFE 188 (485)
Q Consensus 147 dg--~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~------------------------------------~~lf~ 188 (485)
++ ..|++++. | ++++||++..++.... ...+.
T Consensus 104 ~~~~~~l~s~s~----d------~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 104 QKNAAQFLLSTN----D------KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCSSSEEEEEEC----S------SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CCCcceEEEeCC----C------CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 98 78998774 3 5999999876443100 00122
Q ss_pred eccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEE---------cCCcEEEEEEcCCc-eEEEEEcCCCCe
Q 011452 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI---------SDKNVQEIKISPGI-MLLIFTKASGHV 257 (485)
Q Consensus 189 ~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl---------~~~~V~~VafSpg~-~ll~sss~~~D~ 257 (485)
..+...+..++|+ |+|++|++| .|++|+|||+.+ ++++..+ +...|.+++|+|++ .++++++ .|+
T Consensus 174 ~~h~~~v~~~~~~-~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg 249 (447)
T 3dw8_B 174 NAHTYHINSISIN-SDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKG 249 (447)
T ss_dssp SCCSSCCCEEEEC-TTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTS
T ss_pred cCCCcceEEEEEc-CCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCC
Confidence 2355667789998 799999998 799999999984 4455533 24579999999965 5555544 358
Q ss_pred eEEEEecCCCeE----EEEeecCCc------------ceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCC
Q 011452 258 PLKILSIEDGTV----LKSFNHLLH------------RNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEF 320 (485)
Q Consensus 258 tIklWdi~tG~~----L~tl~~~~~------------~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~ 320 (485)
+|+|||+.++++ ++++.+|.. .+..++|+ |++..|++++. ++|+|||+++ ++++.++.+|.
T Consensus 250 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 250 TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFS-HSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEEC-TTSSEEEEEES-SEEEEEETTCCSSCSCCEESCG
T ss_pred eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEEC-CCCCEEEEeeC-CeEEEEeCCCCccccceeeccc
Confidence 999999999998 899998876 89999997 67888888888 9999999998 99999998886
Q ss_pred Cc---------------eEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC---------------------
Q 011452 321 MT---------------PSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW--------------------- 362 (485)
Q Consensus 321 ~~---------------v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~--------------------- 362 (485)
.. +..++|+|+|++|++++ |++|+|||++ ++++ ++++|...
T Consensus 328 ~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 328 YLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred cccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCcccc
Confidence 42 23489999999999999 9999999997 6665 67766421
Q ss_pred -------CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 363 -------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 363 -------~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.....|..++|+|+|.+||+++. +.+.||+-
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~------------~~~~~~~~ 444 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATT------------NNLYIFQD 444 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECS------------SCEEEEEC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEec------------ceeeeecc
Confidence 11223788999999999999985 45888873
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=293.24 Aligned_cols=283 Identities=8% Similarity=0.039 Sum_probs=223.4
Q ss_pred cccceEEEEEe--c---CEEEEEeCCCeEEeeeccc-CcEE-EEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 94 KRSKIIEIVAA--R---DIVFALAQSGVCAAFCRET-NQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 94 ~~s~V~~i~~s--~---~~ias~s~dgtiklW~~~t-G~~l-~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
|..+|..|+|+ + ++||+++.||++++|++++ ++.+ ..+.+ |...|.+++|+|+|+.|++++. |
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~~----d----- 107 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQM-HTGPVLDVCWSDDGSKVFTASC----D----- 107 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEE-CSSCEEEEEECTTSSEEEEEET----T-----
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEecc-ccCCEEEEEECcCCCEEEEEcC----C-----
Confidence 45556666666 3 7999999999999999998 7776 56665 8889999999999999999774 4
Q ss_pred eeEEEEeEeccCCcCcccceeeeccccCceEEEE--eCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC
Q 011452 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP 243 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~F--s~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSp 243 (485)
++++||++..+++. .++. +...+..++| + |+|++|++++.|++|+|||+.+++++.++.. ..+.++.+++
T Consensus 108 -g~v~iwd~~~~~~~---~~~~--~~~~v~~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 108 -KTAKMWDLSSNQAI---QIAQ--HDAPVKTIHWIKA-PNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp -SEEEEEETTTTEEE---EEEE--CSSCEEEEEEEEC-SSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred -CcEEEEEcCCCCce---eecc--ccCceEEEEEEeC-CCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 59999999888762 2333 4456778999 6 7999999999999999999999998888864 5788888887
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEe-e-cCCcceeEEEEEecCCCE----EEEEeCCCcEEEEECCCC---eeEE
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSF-N-HLLHRNKKVDFIEQFNEK----LLVKQENENLQILDVRNF---ELTE 314 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl-~-~~~~~~~~V~f~~~~~~~----lls~s~D~tIkIWDv~tg---~~~~ 314 (485)
...++ +. .++.+++|++..+...... . .+.+....+.+.. +... +++++.|++|+|||+++. +++.
T Consensus 181 ~~~~~-~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~ 255 (368)
T 3mmy_A 181 PMAVV-AT---AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK-DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNF 255 (368)
T ss_dssp TEEEE-EE---GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE-CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSE
T ss_pred CeeEE-Ee---CCCcEEEEEeccccchhhhccccccCCCceEEEcc-cCCCCCCeEEEecCCCcEEEEecCCCCccccce
Confidence 64443 32 3479999999887654333 2 2334455666642 2332 888999999999999988 6677
Q ss_pred ecccCCC------------ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 315 VSRTEFM------------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 315 ~l~gh~~------------~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
.+.+|.. .|.+++|+|++++|++++ |++|+|||++ ++++.++.+|... |.+++|+|||++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l 330 (368)
T 3mmy_A 256 TFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQP-----ISACCFNHNGNIF 330 (368)
T ss_dssp EEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSC-----EEEEEECTTSSCE
T ss_pred eeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCC-----ceEEEECCCCCeE
Confidence 7788876 799999999999999999 9999999996 9999999999887 9999999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
|+++.| +.+..+++|+.+..+.+
T Consensus 331 ~~~s~d--------~~~~~~~~~~~~~~~~i 353 (368)
T 3mmy_A 331 AYASSY--------DWSKGHEFYNPQKKNYI 353 (368)
T ss_dssp EEEECC--------CSTTCGGGCCTTSCCEE
T ss_pred EEEecc--------cccccccccCCCcccee
Confidence 999972 12344556666555444
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=297.45 Aligned_cols=313 Identities=11% Similarity=0.082 Sum_probs=241.8
Q ss_pred EEeCCCeEEeeec--ccC--cEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 110 ALAQSGVCAAFCR--ETN--QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 110 s~s~dgtiklW~~--~tG--~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
+++.++.+++|.+ +++ +.+..+.. +. .+.+++|+|++..++++ +.+ +++.+|++.+|++....+
T Consensus 94 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~-~~-~~~~~~~s~~~~~~~~~----~~~------~~i~~~d~~~g~~~~~~~ 161 (433)
T 3bws_A 94 RKPEELNEKLIALDKEGITHRFISRFKT-GF-QPKSVRFIDNTRLAIPL----LED------EGMDVLDINSGQTVRLSP 161 (433)
T ss_dssp SSGGGGTTCEEECCBTTCSEEEEEEEEC-SS-CBCCCEESSSSEEEEEB----TTS------SSEEEEETTTCCEEEECC
T ss_pred cccCCCceEEEEECCCCCcceEEEEEcC-CC-CceEEEEeCCCeEEEEe----CCC------CeEEEEECCCCeEeeecC
Confidence 4567775566554 335 66666655 33 46699999966655552 234 589999998888732111
Q ss_pred eee-eccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCce-EEEEEcCCCCeeEEE
Q 011452 186 LFE-SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIM-LLIFTKASGHVPLKI 261 (485)
Q Consensus 186 lf~-~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~-ll~sss~~~D~tIkl 261 (485)
.-. ..+...+..++|+ ++|+++++++.|++|++||+++++++.++. ...+.+++|+|++. ++++++ .|++|++
T Consensus 162 ~~~~~~~~~~v~~~~~~-~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~~ 238 (433)
T 3bws_A 162 PEKYKKKLGFVETISIP-EHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW--ISEDISV 238 (433)
T ss_dssp CHHHHTTCCEEEEEEEG-GGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET--TTTEEEE
T ss_pred cccccccCCceeEEEEc-CCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec--CCCcEEE
Confidence 000 1234456679996 799999999999999999999999988885 56899999998654 445543 3579999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--------CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ 333 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--------~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ 333 (485)
||+.+|+++.++..+ ..+..++|+ |++..+++++ .|++|++||+++++++..+ .|...+..++|+|+|+
T Consensus 239 ~d~~~~~~~~~~~~~-~~~~~~~~~-~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 239 IDRKTKLEIRKTDKI-GLPRGLLLS-KDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp EETTTTEEEEECCCC-SEEEEEEEC-TTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTT
T ss_pred EECCCCcEEEEecCC-CCceEEEEc-CCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCC
Confidence 999999999999865 457889996 6788888876 4889999999999988876 5666899999999996
Q ss_pred -EEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCC----CCCCcCCCCeEEEEeCC
Q 011452 334 -LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD----DPLAEGNAGSINISNIL 406 (485)
Q Consensus 334 -llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~----d~~~~~~DgtIklWdl~ 406 (485)
++++++ |++|++||++ ++++..+. |... +..++|+|||++|++++.+... -...++.||+|++||+.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDK-----PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE-CSSS-----EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec-CCCC-----CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 556767 9999999996 88888886 4444 8999999999999998862100 01233457899999999
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecC-CCcEEEccC
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR-HGLVHVWSN 485 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~-DgtVklWd~ 485 (485)
+++++..+.++. .+.+++|+|||+.|++++. |++|++|++
T Consensus 390 ~~~~~~~~~~~~---------------------------------------~~~~~~~s~dg~~l~~~~~~d~~i~v~~~ 430 (433)
T 3bws_A 390 TDTVKEFWEAGN---------------------------------------QPTGLDVSPDNRYLVISDFLDHQIRVYRR 430 (433)
T ss_dssp TTEEEEEEECSS---------------------------------------SEEEEEECTTSCEEEEEETTTTEEEEEEE
T ss_pred CCcEEEEecCCC---------------------------------------CCceEEEcCCCCEEEEEECCCCeEEEEEe
Confidence 999999998754 7899999999999998875 999999983
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-36 Score=305.80 Aligned_cols=279 Identities=11% Similarity=0.138 Sum_probs=226.1
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC---cCcccceeee-------------------------
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK---PDAGFALFES------------------------- 189 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~---~~~~~~lf~~------------------------- 189 (485)
++.+|+|||||++|++++ + ..+.+|++.+|+ ... .|..
T Consensus 6 p~~~v~~s~dg~~l~~~~----~-------~~i~v~d~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII----K-------NCILSFKYQSPNHWEFAG---KWSDDFDKIQESRNTTAKEQQGQSSENEN 71 (450)
T ss_dssp CCCEEEECSSSSEEEEEE----T-------TEEEEEEEETTTEEEEEE---EEECCC-----------------------
T ss_pred cEEEEEecCCCCEEEEEe----C-------CeEEEEECCCCCcceeee---ecCCccccccccccccchhhccccccccc
Confidence 688999999999776643 3 389999999998 311 1110
Q ss_pred ----------------------------ccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecC--CCeEEEEEc----CC
Q 011452 190 ----------------------------ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLK--NYTMLYSIS----DK 234 (485)
Q Consensus 190 ----------------------------~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~--~g~~l~tl~----~~ 234 (485)
.+...+..++|+ |+|++| ++++.|++|+|||+. +++++..+. ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 150 (450)
T 2vdu_B 72 ENKKLKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLT-SDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSK 150 (450)
T ss_dssp ----------------------------CCCCCEEEEEEC-TTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSS
T ss_pred cccccccCcCccccccCccccCCCCCCCccCCceEEEEEc-CCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCC
Confidence 011246789998 799996 999999999999999 888887763 36
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE----EeecCCcceeEEEEEecC---CCEEEEEeCCCcEEEEEC
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK----SFNHLLHRNKKVDFIEQF---NEKLLVKQENENLQILDV 307 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~----tl~~~~~~~~~V~f~~~~---~~~lls~s~D~tIkIWDv 307 (485)
.|.+|+|+|++.++++++. |+.|++|++.+++... ++.+|...+..|+|+ |+ +..|++++.|++|+|||+
T Consensus 151 ~v~~~~~sp~~~~l~~~~~--~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s-p~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADK--FGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI-KDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp CEEEEEECTTSSEEEEEET--TSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEE-ECTTSCEEEEEEETTSCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEeC--CCcEEEEecCCcccccccceeeecccCceEEEEEc-CCCCCCcEEEEEcCCCcEEEEEC
Confidence 8999999997766666543 5899999999988665 888999999999998 55 667888899999999999
Q ss_pred CCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCC--------------------CC
Q 011452 308 RNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLW--------------------HP 364 (485)
Q Consensus 308 ~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~--------------------~~ 364 (485)
++++++.. +.+|...|.+++|+ ++++|+|++ |++|+|||++ |+++.++..|... ..
T Consensus 228 ~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 228 PQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp SCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CB
T ss_pred CCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccc
Confidence 99998887 67999999999999 999999999 9999999996 9999999754200 01
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC--CCC---eEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI--LTG---KCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl--~TG---k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
...|.+|+|+|||++|++++. .|++|+|||+ .++ +++.++.+|.
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~----------~d~~i~iw~~~~~~~~~l~~~~~~~~~~--------------------- 355 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVE----------ATKCIIILEMSEKQKGDLALKQIITFPY--------------------- 355 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEET----------TCSEEEEEEECSSSTTCEEEEEEEECSS---------------------
T ss_pred eEEEEEEEEeCCCCEEEEEEC----------CCCeEEEEEeccCCCCceeeccEeccCC---------------------
Confidence 123899999999999999983 2799999999 777 8899998874
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecC------CCcEEEcc
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNR------HGLVHVWS 484 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~------DgtVklWd 484 (485)
.|++++|+|++..++.++. +..|+||.
T Consensus 356 ------------------~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~ 388 (450)
T 2vdu_B 356 ------------------NVISLSAHNDEFQVTLDNKESSGVQKNFAKFIE 388 (450)
T ss_dssp ------------------CEEEEEEETTEEEEEECCTTCCSSCCCSEEEEE
T ss_pred ------------------ceEEEEecCCcEEEEEecccCCCCCCcceEEEE
Confidence 7999999997655655554 55688885
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-37 Score=312.51 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=169.5
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-----E--cCCcEEEEEEcC--------CceEEEEEcCCCCeeEEEEec
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-----I--SDKNVQEIKISP--------GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-----l--~~~~V~~VafSp--------g~~ll~sss~~~D~tIklWdi 264 (485)
+.++++.+||+++.|++|||||++++++... + |.+.|++|+|+| ++.++++++. |+||||||+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~--D~tv~~Wd~ 173 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD--DCTLIIWRL 173 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET--TSEEEEEEE
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC--CCeEEEEEC
Confidence 3357899999999999999999999876432 2 345899999997 6677777654 589999999
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEECCCCeeEEe-------------------------ccc
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRNFELTEV-------------------------SRT 318 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWDv~tg~~~~~-------------------------l~g 318 (485)
+++.++..+.+|...+.+|+|+ |++ .+|++++.|++|+|||+++++.... ..+
T Consensus 174 ~~~~~~~~~~~~~~~v~~v~~~-p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 252 (393)
T 4gq1_A 174 TDEGPILAGYPLSSPGISVQFR-PSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG 252 (393)
T ss_dssp ETTEEEEEEEECSSCEEEEEEE-TTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C
T ss_pred CCCceeeeecCCCCCcEEEEEC-CCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc
Confidence 9999988888888999999998 445 4677889999999999999875433 246
Q ss_pred CCCceEEEEEc-CCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC-------------------
Q 011452 319 EFMTPSAFIFL-YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD------------------- 376 (485)
Q Consensus 319 h~~~v~avaFs-pdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD------------------- 376 (485)
|...+.+++|+ |||++|++++ |++|++||+. ++....+.+|... +..+.++|+
T Consensus 253 ~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (393)
T 4gq1_A 253 IASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK-----LGPKNLLPNVQGISLFPSLLGACPHPRY 327 (393)
T ss_dssp CSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------------CCSCSEEEECSSCCSSCCEECSSC
T ss_pred ccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc-----cccEEEccccccccccCcceeEEEccCC
Confidence 88889999986 8999999999 9999999996 8888888888765 555555543
Q ss_pred -CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 377 -QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 377 -G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+.++++|+. ||+|+|||+.+|+++.++.+|..
T Consensus 328 ~~~~~~sgs~-----------Dg~V~lwd~~~~~~~~~~~~~~~------------------------------------ 360 (393)
T 4gq1_A 328 MDYFATAHSQ-----------HGLIQLINTYEKDSNSIPIQLGM------------------------------------ 360 (393)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTCTTCCEEEEECSS------------------------------------
T ss_pred CCEEEEEECC-----------CCEEEEEECCCCcEEEEecCCCC------------------------------------
Confidence 446677665 89999999999999999988872
Q ss_pred cCCeEEEEEcCCCCEEEEecCCCc
Q 011452 456 LEDITALFYDEDRNEIYTGNRHGL 479 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~Dgt 479 (485)
.|++|+|||||+.||+|+.||.
T Consensus 361 --~V~svafspdG~~LA~as~~Gv 382 (393)
T 4gq1_A 361 --PIVDFCWHQDGSHLAIATEGSV 382 (393)
T ss_dssp --CEEEEEECTTSSEEEEEESSEE
T ss_pred --cEEEEEEcCCCCEEEEEeCCCe
Confidence 8999999999999999998885
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-37 Score=334.77 Aligned_cols=255 Identities=9% Similarity=0.041 Sum_probs=205.8
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS 215 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ 215 (485)
..+|.+|+|||||++|||+| .| +|++ +...++. ++ +|.+.++.|+|+ |+| .|+
T Consensus 15 ~~~v~sv~~SpDG~~iASas----~D------~TV~--d~~~~~~------l~-gh~~~v~~V~Fs-Pdg-------~~~ 67 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTF----PD------ISIG--QPKYAKD------IN-CNSKNLFHVKEF-PLE-------FEN 67 (588)
T ss_dssp SSSSCCEEECTTSCEEEECS----SS------EEEE--EECCCSC------CS-SBGGGTEEEEEE-CCC-------CCC
T ss_pred hccEEEEEECCCCCEEEEEc----CC------ceee--cccccce------ec-CCCccEEEEEEC-CCC-------Ccc
Confidence 35899999999999999966 56 6887 5555543 22 466778899998 788 577
Q ss_pred cEEEeecCCCeEEEEE-cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc-----ceeEEEEEecC
Q 011452 216 IYKVFDLKNYTMLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-----RNKKVDFIEQF 289 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl-~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~-----~~~~V~f~~~~ 289 (485)
++++|+.+. ..+.++ +...|.+|+|||++.++++++ .|++|+|||.++ ++.++. |.. .+.+|+|+ |+
T Consensus 68 ~~~~~~~~~-~~~~~~~~~~~V~~vawSPdG~~LAs~s--~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafS-PD 140 (588)
T 2j04_A 68 KLDFELAQQ-NGLLNSQPVCYPRVCKPSPIDDWMAVLS--NNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWN-PI 140 (588)
T ss_dssp TTTTSCCCS-SCSSTTSCSCCEEEEEECSSSSCEEEEE--TTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEEC-SS
T ss_pred eEEEEeCCC-ceEeecCCCCcEEEEEECCCCCEEEEEe--CCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEc-CC
Confidence 777777542 233333 356899999999777666654 458999999654 888888 554 48899997 78
Q ss_pred CCEEEEEeCCCcEEEEECCCCee-------EEec----ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc---EE
Q 011452 290 NEKLLVKQENENLQILDVRNFEL-------TEVS----RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE---LV 353 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~-------~~~l----~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~---ll 353 (485)
|+.|+++++|++|+|||++++++ ++++ .||..+|.+++|+||| +|+++ |++|++||+. ++ .+
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~ 218 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVS 218 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCE
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccce
Confidence 99999999999999999999863 6675 7788999999999999 55666 9999999997 45 34
Q ss_pred EEee-cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCC
Q 011452 354 TSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 354 ~tl~-gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
++|. +|... |.+|+|+ |++|||++ +++|+|||+.+++......+|.+
T Consensus 219 ~tL~~~h~~~-----V~svaFs--g~~LASa~------------~~tIkLWd~~~~~~~~~~~gh~~------------- 266 (588)
T 2j04_A 219 RMIQNASRRK-----ITDLKIV--DYKVVLTC------------PGYVHKIDLKNYSISSLKTGSLE------------- 266 (588)
T ss_dssp EEEECCCSSC-----CCCEEEE--TTEEEEEC------------SSEEEEEETTTTEEEEEECSCCS-------------
T ss_pred eeecccccCc-----EEEEEEE--CCEEEEEe------------CCeEEEEECCCCeEEEEEcCCCc-------------
Confidence 6784 78766 9999999 69999987 59999999998887544448873
Q ss_pred CCCCccccccccccccccchhcccCCeEEEEE--cCCCCEEEEecCCCcEEEcc
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALEDITALFY--DEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f--spDg~~LaSgs~DgtVklWd 484 (485)
.|+.++| +||++.|+++++||+ |||.
T Consensus 267 -------------------------~V~~va~~~s~d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 267 -------------------------NFHIIPLNHEKESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp -------------------------CCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred -------------------------eEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence 8999999 999999999999999 9996
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-36 Score=289.13 Aligned_cols=264 Identities=9% Similarity=0.047 Sum_probs=219.0
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc---EEEEeecCCcccEEEEEEeeCCC-EEEEEEeecCCCCcccce
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ---RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRC 167 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~---~l~tl~g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~ 167 (485)
|...|.++.|+ +++||+++.||++++|++.+++ .+..+.+ |...|.+++|+|+|+ .|++++. |
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~----d------ 78 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTV----Q------ 78 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEET----T------
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcC----C------
Confidence 55667777777 8999999999999999999887 3444554 888999999999999 9999774 3
Q ss_pred eEEEEeEe-ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC---------CeEEEEEc-CCcE
Q 011452 168 RSTRIEYI-RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSIS-DKNV 236 (485)
Q Consensus 168 ~t~~lw~i-~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~---------g~~l~tl~-~~~V 236 (485)
+++++|++ ..++. ..+....+...+..++|+ | +.+|++++.|++|++||+.+ ++++.++. ...|
T Consensus 79 g~i~~wd~~~~~~~---~~~~~~~~~~~v~~l~~~-~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 153 (342)
T 1yfq_A 79 GEILKVDLIGSPSF---QALTNNEANLGICRICKY-G-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKI 153 (342)
T ss_dssp SCEEEECSSSSSSE---EECBSCCCCSCEEEEEEE-T-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCE
T ss_pred CeEEEEEeccCCce---EeccccCCCCceEEEEeC-C-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCce
Confidence 58999999 88765 112210044567789998 5 89999999999999999987 66665554 5689
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeE--EEEeecCCcceeEEEEEec-CCCEEEEEeCCCcEEEEECCCC--
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIED-GTV--LKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRNF-- 310 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~--L~tl~~~~~~~~~V~f~~~-~~~~lls~s~D~tIkIWDv~tg-- 310 (485)
.+++|+|++ +++++ .|++|++||+++ ++. ......|...+..|+|+ | ++..+++++.|++|+|||++.+
T Consensus 154 ~~~~~~~~~-l~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~-~~~~~~l~~~~~dg~i~i~~~~~~~~ 228 (342)
T 1yfq_A 154 FTMDTNSSR-LIVGM---NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL-PKEQEGYACSSIDGRVAVEFFDDQGD 228 (342)
T ss_dssp EEEEECSSE-EEEEE---STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC-SGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred EEEEecCCc-EEEEe---CCCeEEEEECCccccccceeeecCCCCceeEEEEC-CCCCCEEEEEecCCcEEEEEEcCCCc
Confidence 999999988 55542 347999999998 653 33444667789999997 6 7889999999999999999987
Q ss_pred ----eeEEecccCCC---------ceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC-CCCCCCCCeeEEEEC
Q 011452 311 ----ELTEVSRTEFM---------TPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH-LLWHPDCNTNNIYIT 374 (485)
Q Consensus 311 ----~~~~~l~gh~~---------~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH-~~~~~~~~v~svafS 374 (485)
+++..+.+|.. .|.+++|+|++++|++++ |++|++||++ ++++.++.+| ... |.+++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~-----v~~~~-- 301 (342)
T 1yfq_A 229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDS-----VVKIA-- 301 (342)
T ss_dssp STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSE-----EEEEE--
T ss_pred ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCC-----ceEec--
Confidence 78888888865 999999999999999999 9999999996 9999999998 777 99999
Q ss_pred CCCCEEEEEec
Q 011452 375 SDQDLIISYCK 385 (485)
Q Consensus 375 pDG~~LaS~s~ 385 (485)
|||++|++++.
T Consensus 302 ~~~~~l~s~s~ 312 (342)
T 1yfq_A 302 CSDNILCLATS 312 (342)
T ss_dssp ECSSEEEEEEE
T ss_pred CCCCeEEEEec
Confidence 99999999998
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=304.08 Aligned_cols=279 Identities=15% Similarity=0.150 Sum_probs=220.7
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceeeeccccCceEEEEeCC-CCeEEEEeeCCCcE
Q 011452 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWPGFVEFDDV-NGKVLTYSAQDSIY 217 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~~~~~~~~~~V~Fs~p-nG~~Las~s~D~ti 217 (485)
..+++||+...++.. ++.+ +++.||++.. |++......+. +|...+..++|+ | ++++|++++.|++|
T Consensus 38 ~~~~~~~~~~~~~~~---~~~~------g~i~v~~~~~~~~~~~~~~~~~-~h~~~V~~~~~~-p~~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 38 GFCAVNPKFMALICE---ASGG------GAFLVLPLGKTGRVDKNVPLVC-GHTAPVLDIAWC-PHNDNVIASGSEDCTV 106 (402)
T ss_dssp CSEEECSSEEEEEBC---CSSS------CCEEEEETTCCEECCTTCCCBC-CCSSCEEEEEEC-TTCTTEEEEEETTSEE
T ss_pred CcEEECCCeEEEEEE---EcCC------CEEEEEECccCCCCCCCCceEe-cCCCCEEEEEeC-CCCCCEEEEEeCCCeE
Confidence 457788877654431 2344 6999999843 33322222333 355667799998 6 99999999999999
Q ss_pred EEeecCCC-------eEEEEEc--CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEe--ecCCcceeEEEE
Q 011452 218 KVFDLKNY-------TMLYSIS--DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSF--NHLLHRNKKVDF 285 (485)
Q Consensus 218 KlWdl~~g-------~~l~tl~--~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl--~~~~~~~~~V~f 285 (485)
+|||+.++ +++.++. ...|.+|+|+|++ .++++++ .|++|+|||+++|+++.++ .+|...+..++|
T Consensus 107 ~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 107 MVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG--CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp EEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE--TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred EEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc--CCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence 99999988 4555664 5689999999975 4555544 4589999999999999999 889999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEECCCCeeEEec-ccCCCc-eEEEEEcCCCcEEEEE---e-CCcEEEEeCC-CcE-EEEee
Q 011452 286 IEQFNEKLLVKQENENLQILDVRNFELTEVS-RTEFMT-PSAFIFLYENQLFLTF---R-NRTVAVWNFR-GEL-VTSFE 357 (485)
Q Consensus 286 ~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-~gh~~~-v~avaFspdg~llaS~---s-D~TIklWd~~-G~l-l~tl~ 357 (485)
+ |++..|++++.|++|+|||+++++++..+ .+|... +..++|+|++++|+++ + |++|++||++ ++. +..+.
T Consensus 185 ~-~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~ 263 (402)
T 2aq5_A 185 S-RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE 263 (402)
T ss_dssp C-TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE
T ss_pred C-CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe
Confidence 7 68889999999999999999999999988 788876 8999999999999999 6 9999999996 553 33333
Q ss_pred -cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE-EEEecCCCCCCCCcccccCCCCCCC
Q 011452 358 -DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC-LAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 358 -gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~-l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
+|... +..++|+|||++|+.++. .|++|+|||+.+++. +..+..|..
T Consensus 264 ~~~~~~-----v~~~~~s~~~~~l~~~g~----------~dg~i~i~d~~~~~~~~~~l~~~~~---------------- 312 (402)
T 2aq5_A 264 LDTSSG-----VLLPFFDPDTNIVYLCGK----------GDSSIRYFEITSEAPFLHYLSMFSS---------------- 312 (402)
T ss_dssp CCCCSS-----CEEEEEETTTTEEEEEET----------TCSCEEEEEECSSTTCEEEEEEECC----------------
T ss_pred ccCCCc-----eeEEEEcCCCCEEEEEEc----------CCCeEEEEEecCCCcceEeeccccc----------------
Confidence 45544 899999999999975542 279999999999883 777776641
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..|++++|+|||..+++ .|+.+++|++
T Consensus 313 ----------~----------~~v~~~~~sp~~~~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 313 ----------K----------ESQRGMGYMPKRGLEVN--KCEIARFYKL 340 (402)
T ss_dssp ----------S----------SCCSEEEECCGGGSCGG--GTEEEEEEEE
T ss_pred ----------C----------CcccceEEeccccccee--cceeEEEEEc
Confidence 0 28999999999999875 5679999973
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=287.71 Aligned_cols=255 Identities=9% Similarity=0.058 Sum_probs=201.7
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
|+++.++.+ |...|.+++|+|+|+.||+++. | ++++||++..+.... ...+. .+...+..++|+ ++
T Consensus 1 G~~~~~~~~-h~~~v~~~~~s~~~~~l~~~~~----d------g~i~iw~~~~~~~~~-~~~~~-~h~~~v~~~~~~-~~ 66 (379)
T 3jrp_A 1 GSMVVIANA-HNELIHDAVLDYYGKRLATCSS----D------KTIKIFEVEGETHKL-IDTLT-GHEGPVWRVDWA-HP 66 (379)
T ss_dssp ----CCEEE-CCCCEEEEEECSSSSEEEEEET----T------SCEEEEEEETTEEEE-EEEEC-CCSSCEEEEEEC-CG
T ss_pred CCccEEecC-CcccEEEEEEcCCCCEEEEEEC----C------CcEEEEecCCCccee-eeEec-CCCCcEEEEEeC-CC
Confidence 566777887 8889999999999999999774 3 589999986332210 11222 245567789997 45
Q ss_pred --CeEEEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCe--EEEEee
Q 011452 205 --GKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGT--VLKSFN 274 (485)
Q Consensus 205 --G~~Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~--~L~tl~ 274 (485)
|++|++++.|++|+|||+.+++ .+..+. ...|.+++|+|+ +.++++++ .|++|++||+.+++ ....+.
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~ 144 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIID 144 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTTSCCCEEEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCCCceeeEEec
Confidence 9999999999999999999997 666664 468999999986 65555544 34899999999884 445677
Q ss_pred cCCcceeEEEEEec------------CCCEEEEEeCCCcEEEEECCCCe----eEEecccCCCceEEEEEcCC---CcEE
Q 011452 275 HLLHRNKKVDFIEQ------------FNEKLLVKQENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYE---NQLF 335 (485)
Q Consensus 275 ~~~~~~~~V~f~~~------------~~~~lls~s~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspd---g~ll 335 (485)
+|...+..++|++. ++..+++++.|++|+|||+++++ ++..+.+|...|.+++|+|+ +++|
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 88899999999753 57889999999999999998764 56778899999999999999 9999
Q ss_pred EEEe-CCcEEEEeCC-Cc---EEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 336 LTFR-NRTVAVWNFR-GE---LVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~---ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
++++ |++|+|||++ ++ ....+. .|... |.+++|+|||++|++++. ||+|+|||+.++
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~g~~l~~~~~-----------dg~i~iw~~~~~ 288 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLE 288 (379)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC-----EEEEEECSSSCCEEEEES-----------SSSEEEEEEEET
T ss_pred EEEeCCCEEEEEeCCCCCccceeeeeccccCCCc-----EEEEEEcCCCCEEEEecC-----------CCcEEEEeCCCC
Confidence 9999 9999999996 53 233333 35544 999999999999999987 799999999865
Q ss_pred eEE
Q 011452 409 KCL 411 (485)
Q Consensus 409 k~l 411 (485)
...
T Consensus 289 ~~~ 291 (379)
T 3jrp_A 289 GKW 291 (379)
T ss_dssp TEE
T ss_pred Ccc
Confidence 433
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=300.17 Aligned_cols=271 Identities=10% Similarity=0.107 Sum_probs=215.6
Q ss_pred EEEEEeCCCeEEeeecccC-c---EEEEeecCCcccEEEEEEee-CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 107 IVFALAQSGVCAAFCRETN-Q---RICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG-~---~l~tl~g~~~~~i~sv~~sp-dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
++++++.||++++|+..+. + .+.++.+ |...|.+++|+| +++.||+++. | ++++||++..+++.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~-h~~~V~~~~~~p~~~~~l~s~s~----d------g~v~vw~~~~~~~~ 117 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCG-HTAPVLDIAWCPHNDNVIASGSE----D------CTVMVWEIPDGGLV 117 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCC-CSSCEEEEEECTTCTTEEEEEET----T------SEEEEEECCTTCCS
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEec-CCCCEEEEEeCCCCCCEEEEEeC----C------CeEEEEEccCCCCc
Confidence 3445789999999998653 2 3445655 888999999999 9999999774 4 59999999888542
Q ss_pred c----ccceeeeccccCceEEEEeCCCC-eEEEEeeCCCcEEEeecCCCeEEEEE----cCCcEEEEEEcCCceEEEEEc
Q 011452 182 A----GFALFESESLKWPGFVEFDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSI----SDKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 182 ~----~~~lf~~~~~~~~~~V~Fs~pnG-~~Las~s~D~tiKlWdl~~g~~l~tl----~~~~V~~VafSpg~~ll~sss 252 (485)
. ....+. ++...+..|+|+ |+| .+|++++.|++|+|||+.+++++.++ +...|.+++|+|++.++++++
T Consensus 118 ~~~~~~~~~~~-~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 118 LPLREPVITLE-GHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SCBCSCSEEEE-CCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred cccCCceEEec-CCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 1 011222 355667789998 787 69999999999999999999999999 356899999998666555544
Q ss_pred CCCCeeEEEEecCCCeEEEEe-ecCCcc-eeEEEEEecCCCEEEEE---eCCCcEEEEECCCCee-EEec-ccCCCceEE
Q 011452 253 ASGHVPLKILSIEDGTVLKSF-NHLLHR-NKKVDFIEQFNEKLLVK---QENENLQILDVRNFEL-TEVS-RTEFMTPSA 325 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L~tl-~~~~~~-~~~V~f~~~~~~~lls~---s~D~tIkIWDv~tg~~-~~~l-~gh~~~v~a 325 (485)
.|++|+|||+++|+++.++ .+|.+. +..+.|+ +++..|+++ +.|++|+|||+++++. +... ..|...+.+
T Consensus 196 --~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~ 272 (402)
T 2aq5_A 196 --RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV-SEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLL 272 (402)
T ss_dssp --TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC-STTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEE
T ss_pred --cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc-CCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeE
Confidence 4589999999999999999 677665 7899997 666666666 6999999999998764 3322 357778999
Q ss_pred EEEcCCCcEEE-EEe-CCcEEEEeCC-Cc-EEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 326 FIFLYENQLFL-TFR-NRTVAVWNFR-GE-LVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 326 vaFspdg~lla-S~s-D~TIklWd~~-G~-ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
++|+|++++|+ +++ |++|++||++ ++ ++..+..|. .. |.+++|+|||.+++++ +++
T Consensus 273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~-----v~~~~~sp~~~~~~s~-------------~~~ 334 (402)
T 2aq5_A 273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKES-----QRGMGYMPKRGLEVNK-------------CEI 334 (402)
T ss_dssp EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSC-----CSEEEECCGGGSCGGG-------------TEE
T ss_pred EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCc-----ccceEEecccccceec-------------cee
Confidence 99999999986 566 9999999996 66 366776664 34 8999999999999864 579
Q ss_pred EEEEeCCCCeEE
Q 011452 400 INISNILTGKCL 411 (485)
Q Consensus 400 IklWdl~TGk~l 411 (485)
+++|++.++++.
T Consensus 335 ~~~~~l~~~~~~ 346 (402)
T 2aq5_A 335 ARFYKLHERKCE 346 (402)
T ss_dssp EEEEEEETTEEE
T ss_pred EEEEEcCCCcEE
Confidence 999999998764
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-36 Score=293.97 Aligned_cols=265 Identities=11% Similarity=0.057 Sum_probs=203.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+.+||+++.||+|++||+++|+.+.++. ...|+++.|+|+ |+++| .| +++++|+.. +
T Consensus 48 ~~~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s----~D------~~i~~w~~~-~------ 104 (343)
T 3lrv_A 48 KWVCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRG----PC------NRLLLLYPG-N------ 104 (343)
T ss_dssp EEEEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEEC----ST------TEEEEEETT-T------
T ss_pred CCEEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEec----CC------CeEEEEEcc-C------
Confidence 6889999999999999999888888775 234666777776 55544 33 466666631 0
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc---CCcEEEEEEcC--CceEEEEEcCCCCeeE
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP--GIMLLIFTKASGHVPL 259 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~---~~~V~~VafSp--g~~ll~sss~~~D~tI 259 (485)
.+.+||+.+++++..+. ...|.+++|+| ++.++++++ .|++|
T Consensus 105 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s--~dg~i 151 (343)
T 3lrv_A 105 -------------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD--NRGTI 151 (343)
T ss_dssp -------------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE--TTCCE
T ss_pred -------------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe--CCCcE
Confidence 34456666777665553 25799999999 887777665 45899
Q ss_pred EEEecCCCeEEEEeec-CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE-Eeccc-CCCceEEEEEcCCCcEEE
Q 011452 260 KILSIEDGTVLKSFNH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT-EVSRT-EFMTPSAFIFLYENQLFL 336 (485)
Q Consensus 260 klWdi~tG~~L~tl~~-~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~-~~l~g-h~~~v~avaFspdg~lla 336 (485)
+|||+++|+++..+.. |...+..++|+ |++..|++++.|++|+|||+++++++ ..+.+ |...|.+++|+|+|++|+
T Consensus 152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~-pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~ 230 (343)
T 3lrv_A 152 GFQSYEDDSQYIVHSAKSDVEYSSGVLH-KDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV 230 (343)
T ss_dssp EEEESSSSCEEEEECCCSSCCCCEEEEC-TTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred EEEECCCCcEEEEEecCCCCceEEEEEC-CCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence 9999999999888753 44478899997 67888888999999999999999988 78888 999999999999999999
Q ss_pred EEeCCcEEEEeCC-CcEEEEeec---CCCCCCCCCee--EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 337 TFRNRTVAVWNFR-GELVTSFED---HLLWHPDCNTN--NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 337 S~sD~TIklWd~~-G~ll~tl~g---H~~~~~~~~v~--svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+++|++|+|||++ ++++.+++. |... +. .++|+|+|++|++++. .|++|+||++.+++.
T Consensus 231 s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~l~~~s~----------~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 231 VECDQTVVCFDLRKDVGTLAYPTYTIPEFK-----TGTVTYDIDDSGKNMIAYSN----------ESNSLTIYKFDKKTK 295 (343)
T ss_dssp EEESSBEEEEETTSSTTCBSSCCCBC----------CCEEEEECTTSSEEEEEET----------TTTEEEEEEECTTTC
T ss_pred EEeCCeEEEEEcCCCCcceeeccccccccc-----ccceEEEECCCCCEEEEecC----------CCCcEEEEEEccccc
Confidence 9996699999996 777666554 4433 44 5999999999999875 269999999865432
Q ss_pred EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcC---CCCEEEEecCCCcEEEc
Q 011452 411 LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDE---DRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 411 l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fsp---Dg~~LaSgs~DgtVklW 483 (485)
.... ..+..++|+| +++.|++++.|+++++|
T Consensus 296 ~~~~------------------------------------------~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 296 NWTK------------------------------------------DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp SEEE------------------------------------------EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred ceEe------------------------------------------cCceeEecCccccccceeEEEecCCceEEE
Confidence 2221 1577889999 99999999999999987
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=306.28 Aligned_cols=310 Identities=9% Similarity=0.049 Sum_probs=247.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe--ccCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI--RRGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~~~ 182 (485)
+.++++.+.|+++++||..+|+++.++..++. +++++|||||++|++++.+ + ++.+||+ .++++..
T Consensus 149 ~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d---~-------~V~v~D~~~~t~~~~~ 216 (543)
T 1nir_A 149 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRD---A-------RIDMIDLWAKEPTKVA 216 (543)
T ss_dssp GEEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETT---S-------EEEEEETTSSSCEEEE
T ss_pred CEEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCC---C-------eEEEEECcCCCCcEEE
Confidence 88999999999999999999999999985454 8999999999999998742 3 8999998 6776522
Q ss_pred ccceeeeccccCceEEEEeCC----CCeEEEEee-CCCcEEEeecCCCeEEEEEcC-------------CcEEEEEEcC-
Q 011452 183 GFALFESESLKWPGFVEFDDV----NGKVLTYSA-QDSIYKVFDLKNYTMLYSISD-------------KNVQEIKISP- 243 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~p----nG~~Las~s-~D~tiKlWdl~~g~~l~tl~~-------------~~V~~VafSp- 243 (485)
.+. .-..|..|+|+ | ||++|++++ .|++|+|||..+++++.++.. ..|.+|+|||
T Consensus 217 ---~i~--~g~~p~~va~s-p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~ 290 (543)
T 1nir_A 217 ---EIK--IGIEARSVESS-KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE 290 (543)
T ss_dssp ---EEE--CCSEEEEEEEC-CSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS
T ss_pred ---EEe--cCCCcceEEeC-CCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC
Confidence 122 23457799998 8 999998887 489999999999999988752 2689999998
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEE--EeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEeccc--
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLK--SFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRT-- 318 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~--tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~g-- 318 (485)
+..++++.. .+++|.+||+.+++.++ ++. +......++|+ |++.+++++ ..|++|++||+++++++.++..
T Consensus 291 ~~~~~vs~~--~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~s-pdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 291 HPEFIVNVK--ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSEEEEEET--TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCEEEEEEC--CCCeEEEEEecCCCcceeEEec-cCcCccCceEC-CCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 566666544 45899999999988765 454 44567789996 788888776 4799999999999999988764
Q ss_pred --CCCceEEEEEcCC-CcEEEEEe--CCcEEEEeC-C-------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 319 --EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNF-R-------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 319 --h~~~v~avaFspd-g~llaS~s--D~TIklWd~-~-------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
|......+ ++|+ |++++|++ |++|+|||. . +++++++++|..+ +..|+|+|||++|.+++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~-----~~~v~~~pdg~~l~v~~~ 440 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTT 440 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCCEEEECCT
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCC-----ceEEEcCCCCCcEEEecC
Confidence 65555555 4666 88899885 899999998 4 7899999999876 788999999999999862
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCeEE-EEe--------cCCCCCCCCcccccCCCCCCCCccccccccccccccchhccc
Q 011452 386 ADSDDPLAEGNAGSINISNILTGKCL-AKI--------RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk~l-~tl--------~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
-.++ ...+++|.|||+.|++++ ..| ..|.
T Consensus 441 ~~~~----~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------- 478 (543)
T 1nir_A 441 FNPD----ARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA-------------------------------------- 478 (543)
T ss_dssp TCSS----HHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC--------------------------------------
T ss_pred CCCC----cccCceEEEEECCCCCCCeEEeechhhcccCCCC--------------------------------------
Confidence 0000 001589999999999988 554 2222
Q ss_pred CCeEEEEEcCCCCEEEEe-----cCCCcEEEcc
Q 011452 457 EDITALFYDEDRNEIYTG-----NRHGLVHVWS 484 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSg-----s~DgtVklWd 484 (485)
..|..++|+|||++|+.+ +.|++|.|||
T Consensus 479 ~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 479 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred CceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence 388999999999999966 3589999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-36 Score=294.44 Aligned_cols=224 Identities=9% Similarity=0.063 Sum_probs=190.0
Q ss_pred CCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEec---------CCCeEEEEe
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSI---------EDGTVLKSF 273 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi---------~tG~~L~tl 273 (485)
+++.+|++|+.|++|+|||+++++++.++....|.+++|+|. ++ ++ +.|++|++|+. +++++++.+
T Consensus 46 ~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~--~~-s~--s~D~~i~~w~~~~~~~~~~~~~~~~~~~~ 120 (343)
T 3lrv_A 46 YDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA--II-SR--GPCNRLLLLYPGNQITILDSKTNKVLREI 120 (343)
T ss_dssp EEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS--EE-EE--CSTTEEEEEETTTEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc--eE-Ee--cCCCeEEEEEccCceEEeecCCcceeEEe
Confidence 478999999999999999999999988887778889999998 44 43 34589999954 477777777
Q ss_pred e-cCCcceeEEEEEec--CCCEEEEEeCCCcEEEEECCCCeeEEecc-cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 274 N-HLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNFELTEVSR-TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 274 ~-~~~~~~~~V~f~~~--~~~~lls~s~D~tIkIWDv~tg~~~~~l~-gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
. +|...+..++|+ | ++..+++++.|++|+|||+++++++.... .|...+.+++|+|||++||+++ |++|+|||+
T Consensus 121 ~~~~~~~v~~~~~~-~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~ 199 (343)
T 3lrv_A 121 EVDSANEIIYMYGH-NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNL 199 (343)
T ss_dssp ECCCSSCEEEEECC-C---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred ecCCCCCEEEEEcC-CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 6 666789999997 5 78889999999999999999999987764 4555899999999999999999 999999999
Q ss_pred C-CcEE-EEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 349 R-GELV-TSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 349 ~-G~ll-~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
+ ++++ .+|++ |... |.+|+|+|||++|++++. ++|+|||+.+++++.++..+...
T Consensus 200 ~~~~~~~~~~~~~h~~~-----v~~l~fs~~g~~l~s~~~------------~~v~iwd~~~~~~~~~~~~~~~~----- 257 (343)
T 3lrv_A 200 SSPDQASSRFPVDEEAK-----IKEVKFADNGYWMVVECD------------QTVVCFDLRKDVGTLAYPTYTIP----- 257 (343)
T ss_dssp SCTTSCCEECCCCTTSC-----EEEEEECTTSSEEEEEES------------SBEEEEETTSSTTCBSSCCCBC------
T ss_pred CCCCCCccEEeccCCCC-----EEEEEEeCCCCEEEEEeC------------CeEEEEEcCCCCcceeecccccc-----
Confidence 6 8887 89998 9877 999999999999999983 59999999999988777764320
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCe--EEEEEcCCCCEEEEecC-CCcEEEcc
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDI--TALFYDEDRNEIYTGNR-HGLVHVWS 484 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V--~sl~fspDg~~LaSgs~-DgtVklWd 484 (485)
. ..+ .+++|+|+|+.|++|+. |+.|+||+
T Consensus 258 -------------------~-----------~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 258 -------------------E-----------FKTGTVTYDIDDSGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp ----------------------------------CCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred -------------------c-----------ccccceEEEECCCCCEEEEecCCCCcEEEEE
Confidence 0 022 46999999999999998 99999996
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-33 Score=276.83 Aligned_cols=254 Identities=10% Similarity=0.100 Sum_probs=210.9
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
+++++|++.+|++.. .+.. -..+..++|+ |+|+.| ++++.|++|++||+.+++++.++. ...|.+++|+|++
T Consensus 12 ~~v~v~d~~~~~~~~---~~~~--~~~~~~~~~s-~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg 85 (391)
T 1l0q_A 12 DNISVIDVTSNKVTA---TIPV--GSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (391)
T ss_dssp TEEEEEETTTTEEEE---EEEC--SSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEE---Eeec--CCCcceEEEC-CCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCC
Confidence 599999998887622 3332 2346789998 799866 788899999999999999998886 4589999999866
Q ss_pred e-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEE-EEeCCCcEEEEECCCCeeEEecccCCCce
Q 011452 246 M-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDVRNFELTEVSRTEFMTP 323 (485)
Q Consensus 246 ~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll-s~s~D~tIkIWDv~tg~~~~~l~gh~~~v 323 (485)
. ++++++ .|++|++||+++|+++..+.++ ..+..++|+ |++..++ +++.|++|++||+.+++++..+..|. .+
T Consensus 86 ~~l~~~~~--~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~ 160 (391)
T 1l0q_A 86 KQVYVTNM--ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGR-SP 160 (391)
T ss_dssp SEEEEEET--TTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECCS-SE
T ss_pred CEEEEEEC--CCCEEEEEECCCCeEEEEEeCC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCC-Cc
Confidence 5 445543 3489999999999999999865 467899996 6777774 56789999999999999999987764 67
Q ss_pred EEEEEcCCCcEE-EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 324 SAFIFLYENQLF-LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 324 ~avaFspdg~ll-aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
..++|+|+|+.| ++++ |++|++||++ ++++..+..+. . +..++|+|||++|++++. .+.+++|
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~g~~l~~~~~--------~~~~~~v 226 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEA-A-----PSGIAVNPEGTKAYVTNV--------DKYFNTV 226 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-E-----EEEEEECTTSSEEEEEEE--------CSSCCEE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecCC-C-----ccceEECCCCCEEEEEec--------CcCCCcE
Confidence 999999999877 6777 9999999996 88888887543 3 889999999999999874 1127999
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE-EEecCCCc
Q 011452 401 NISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI-YTGNRHGL 479 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L-aSgs~Dgt 479 (485)
++||+.+++++.++..|. .+.+++|+|||+.| ++++.|++
T Consensus 227 ~~~d~~~~~~~~~~~~~~---------------------------------------~~~~~~~s~dg~~l~~s~~~d~~ 267 (391)
T 1l0q_A 227 SMIDTGTNKITARIPVGP---------------------------------------DPAGIAVTPDGKKVYVALSFXNT 267 (391)
T ss_dssp EEEETTTTEEEEEEECCS---------------------------------------SEEEEEECTTSSEEEEEETTTTE
T ss_pred EEEECCCCeEEEEEecCC---------------------------------------CccEEEEccCCCEEEEEcCCCCE
Confidence 999999999999998875 67899999999987 78899999
Q ss_pred EEEccC
Q 011452 480 VHVWSN 485 (485)
Q Consensus 480 VklWd~ 485 (485)
|++||.
T Consensus 268 v~v~d~ 273 (391)
T 1l0q_A 268 VSVIDT 273 (391)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999984
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-34 Score=287.68 Aligned_cols=227 Identities=10% Similarity=0.105 Sum_probs=185.8
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
+...+.+|+|+ |||++||+|+.| .++|||+.++++++......+..+++++ +..++++++ .|++|+|||+++|++
T Consensus 18 h~~~V~~v~fs-~dg~~la~g~~~-~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~v~iWd~~~~~~ 93 (355)
T 3vu4_A 18 VSNPVTDYEFN-QDQSCLILSTLK-SFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG--VKEVVHIWDDVKKQD 93 (355)
T ss_dssp -CCCCCEEEEC-TTSSEEEEECSS-EEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECS--STTEEEEEETTTTEE
T ss_pred CCCceEEEEEC-CCCCEEEEEcCC-EEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEEC--CccEEEEEECCCCcE
Confidence 44567799998 799999998866 5899999999888777655678888886 444444433 447999999999999
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC-eeEEecccCCCceEEEEEcCCCcEEEE--Ee-CCcEEE
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF-ELTEVSRTEFMTPSAFIFLYENQLFLT--FR-NRTVAV 345 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg-~~~~~l~gh~~~v~avaFspdg~llaS--~s-D~TIkl 345 (485)
+.++.+ ...+..|+|.+ +.++++ .|++|+|||+.++ +++..+.+ ....++|+| ++++. ++ |++|+|
T Consensus 94 ~~~~~~-~~~v~~v~~~~---~~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~i 163 (355)
T 3vu4_A 94 VSRIKV-DAPVKDLFLSR---EFIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHI 163 (355)
T ss_dssp EEEEEC-SSCEEEEEECS---SEEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEE
T ss_pred EEEEEC-CCceEEEEEcC---CEEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEE
Confidence 999984 46888999852 344444 5889999999998 77777655 445567788 55555 46 999999
Q ss_pred EeCC-Cc----------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCC
Q 011452 346 WNFR-GE----------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILT 407 (485)
Q Consensus 346 Wd~~-G~----------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~T 407 (485)
||++ ++ ++.++.+|... |++|+|+|||++|||++. |++ |+|||+.+
T Consensus 164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~-----v~~~~~s~~g~~l~s~s~-----------d~~~v~iwd~~~ 227 (355)
T 3vu4_A 164 TKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP-----IKMVRLNRKSDMVATCSQ-----------DGTIIRVFKTED 227 (355)
T ss_dssp EECCC------------------CCEEECCCSSC-----EEEEEECTTSSEEEEEET-----------TCSEEEEEETTT
T ss_pred EECCCCCccccccccccccccCcccEEEEccCCc-----eEEEEECCCCCEEEEEeC-----------CCCEEEEEECCC
Confidence 9996 54 27899999987 999999999999999997 799 99999999
Q ss_pred CeEEEEec-C-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 408 GKCLAKIR-A-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 408 Gk~l~tl~-g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
|+++.++. + |.. .|++|+|+|||+.|+||+.|++|+|||+
T Consensus 228 ~~~~~~~~~g~h~~--------------------------------------~v~~~~~s~~~~~l~s~s~d~~v~iw~~ 269 (355)
T 3vu4_A 228 GVLVREFRRGLDRA--------------------------------------DVVDMKWSTDGSKLAVVSDKWTLHVFEI 269 (355)
T ss_dssp CCEEEEEECTTCCS--------------------------------------CEEEEEECTTSCEEEEEETTCEEEEEES
T ss_pred CcEEEEEEcCCCCC--------------------------------------cEEEEEECCCCCEEEEEECCCEEEEEEc
Confidence 99999998 5 762 8999999999999999999999999984
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-34 Score=290.38 Aligned_cols=239 Identities=14% Similarity=0.163 Sum_probs=203.4
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC----------CeEEEEEc--CCcEEEEEEcCCce-EEEEEcCCCCe
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----------YTMLYSIS--DKNVQEIKISPGIM-LLIFTKASGHV 257 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~----------g~~l~tl~--~~~V~~VafSpg~~-ll~sss~~~D~ 257 (485)
+...+..++|++.++.+||+++.|++|+|||+.+ ++.+.++. ...|.+|+|+|++. ++++++ .|+
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~--~dg 204 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS--DDH 204 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC--TTS
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe--CCC
Confidence 4566779999843488999999999999999986 56666664 56899999998654 555543 458
Q ss_pred eEEEEecCCCeE-------EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCC---eeEEecccCCCceEEEE
Q 011452 258 PLKILSIEDGTV-------LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNF---ELTEVSRTEFMTPSAFI 327 (485)
Q Consensus 258 tIklWdi~tG~~-------L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg---~~~~~l~gh~~~v~ava 327 (485)
+|+|||+.++.. ...+.+|...+..|+|++.++..+++++.|++|+|||++++ +++..+.+|...|++++
T Consensus 205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~ 284 (430)
T 2xyi_A 205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLS 284 (430)
T ss_dssp CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEE
T ss_pred eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEE
Confidence 999999988432 46777898999999998545677778899999999999987 57778889999999999
Q ss_pred EcCCCc-EEEEEe-CCcEEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEE
Q 011452 328 FLYENQ-LFLTFR-NRTVAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 328 Fspdg~-llaS~s-D~TIklWd~~--G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
|+|+++ +|++++ |++|+|||++ ++++.++.+|... |.+|+|+|+|+ +|+|++. |++|+|
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~-----v~~i~~sp~~~~~l~s~~~-----------d~~i~i 348 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE-----IFQVQWSPHNETILASSGT-----------DRRLHV 348 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC-----EEEEEECSSCTTEEEEEET-----------TSCCEE
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC-----EEEEEECCCCCCEEEEEeC-----------CCcEEE
Confidence 999998 788999 9999999995 6789999999887 99999999995 6899886 799999
Q ss_pred EeCCC--------------CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 403 SNILT--------------GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 403 Wdl~T--------------Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
||+.+ .+++..+.+|.+ .|++++|+|++
T Consensus 349 wd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------------------------------------~v~~~~~~p~~ 390 (430)
T 2xyi_A 349 WDLSKIGEEQSTEDAEDGPPELLFIHGGHTA--------------------------------------KISDFSWNPNE 390 (430)
T ss_dssp EEGGGTTCCCCHHHHHHCCTTEEEECCCCSS--------------------------------------CEEEEEECSSS
T ss_pred EeCCCCccccCccccccCCcceEEEcCCCCC--------------------------------------CceEEEECCCC
Confidence 99987 478888888872 89999999999
Q ss_pred C-EEEEecCCCcEEEccC
Q 011452 469 N-EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 469 ~-~LaSgs~DgtVklWd~ 485 (485)
+ .|+|++.||+|+||+.
T Consensus 391 ~~~l~s~s~dg~i~iw~~ 408 (430)
T 2xyi_A 391 PWIICSVSEDNIMQVWQM 408 (430)
T ss_dssp TTEEEEEETTSEEEEEEE
T ss_pred CCEEEEEECCCCEEEeEc
Confidence 9 9999999999999973
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=290.83 Aligned_cols=239 Identities=8% Similarity=0.002 Sum_probs=168.4
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee--ccccCceEEEEeC-------CCCeE
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--ESLKWPGFVEFDD-------VNGKV 207 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~--~~~~~~~~V~Fs~-------pnG~~ 207 (485)
..+...++++++..||++| .| ++++||++..++.... ..+.. +|..++..|+|+| .||++
T Consensus 90 ~~~~~~~~~~~~~~las~~----~d------~~v~lw~~~~~~~~~~-~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~ 158 (393)
T 4gq1_A 90 GDGNVNSSPVYSLFLACVC----QD------NTVRLIITKNETIITQ-HVLGGKSGHHNFVNDIDIADVYSADNRLAEQV 158 (393)
T ss_dssp -------CCEEEEEEEEEE----TT------SCEEEEEEETTEEEEE-EEECTTTSCSSCEEEEEEEEEECTTCSEEEEE
T ss_pred CCcceeecCCCCCEEEEEe----CC------CcEEEEECCCCcccee-eeecccCCCCCceEEEEEccccccccCCCCCE
Confidence 3445566677888898877 44 6999999988865321 12211 4667888999983 28999
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEe-----------
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSF----------- 273 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl----------- 273 (485)
|||+|.|+||||||+.++.++..+. ...|.+|+|+|++ .++++++ .|++|+|||+.+++...++
T Consensus 159 las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~--~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~ 236 (393)
T 4gq1_A 159 IASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGE--RNGNIRIFDWTLNLSAEENSQTELVKNPWL 236 (393)
T ss_dssp EEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEE--TTSEEEEEETTCCC----------CSCCCS
T ss_pred EEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecC--CCCEEEEEECCCCcccccccccCCcccceE
Confidence 9999999999999999888766553 5689999999854 4555544 4589999999999876543
Q ss_pred --------------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC---------
Q 011452 274 --------------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY--------- 330 (485)
Q Consensus 274 --------------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp--------- 330 (485)
.+|...+..|.|.++++.+|++++.|++++|||+.+++....+.+|...+..+.|+|
T Consensus 237 ~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 237 LTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp EEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSC
T ss_pred EecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccC
Confidence 356667789999988999999999999999999999998888888877777776665
Q ss_pred -----------CCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 331 -----------ENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 331 -----------dg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
++.++++++ |++|+|||++ |+++..+.+|..+ |++|+|||||++||+++.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~-----V~svafspdG~~LA~as~------------ 379 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMP-----IVDFCWHQDGSHLAIATE------------ 379 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSC-----EEEEEECTTSSEEEEEES------------
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCc-----EEEEEEcCCCCEEEEEeC------------
Confidence 344678888 9999999996 9999999999877 999999999999999984
Q ss_pred CeEEEEeC
Q 011452 398 GSINISNI 405 (485)
Q Consensus 398 gtIklWdl 405 (485)
+.|.||.+
T Consensus 380 ~Gv~lvrL 387 (393)
T 4gq1_A 380 GSVLLTRL 387 (393)
T ss_dssp SEEEEEEE
T ss_pred CCeEEEEE
Confidence 56777764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.67 Aligned_cols=255 Identities=9% Similarity=0.081 Sum_probs=202.0
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEcCC--------------------------------------
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDK-------------------------------------- 234 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~~~-------------------------------------- 234 (485)
..|+|+ +||++|+.+ .++.|+|||+.+|+ .+.++..+
T Consensus 8 ~~v~~s-~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (450)
T 2vdu_B 8 QNLLTS-RDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIK 85 (450)
T ss_dssp CEEEEC-SSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-------------------------------------
T ss_pred EEEEec-CCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccc
Confidence 478998 799977766 48899999999999 66665421
Q ss_pred ------------------cEEEEEEcCCceEE-EEEcCCCCeeEEEEecC--CCeEEEEee--cCCcceeEEEEEecCCC
Q 011452 235 ------------------NVQEIKISPGIMLL-IFTKASGHVPLKILSIE--DGTVLKSFN--HLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 235 ------------------~V~~VafSpg~~ll-~sss~~~D~tIklWdi~--tG~~L~tl~--~~~~~~~~V~f~~~~~~ 291 (485)
.|.+++|||++.++ ++++ .|++|+|||+. +|++++.+. .|...+..|+|+ |++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s-p~~~ 162 (450)
T 2vdu_B 86 RTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD--SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA-EDDT 162 (450)
T ss_dssp --------------CCCCCEEEEEECTTSSEEEEEEG--GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC-TTSS
T ss_pred ccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC--CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc-CCCC
Confidence 59999999977664 5544 45899999999 999999997 455778899997 7788
Q ss_pred EEEEEeCCCcEEEEECCCCeeEE----ecccCCCceEEEEEcCC---CcEEEEEe-CCcEEEEeCC-CcEEEE-eecCCC
Q 011452 292 KLLVKQENENLQILDVRNFELTE----VSRTEFMTPSAFIFLYE---NQLFLTFR-NRTVAVWNFR-GELVTS-FEDHLL 361 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~----~l~gh~~~v~avaFspd---g~llaS~s-D~TIklWd~~-G~ll~t-l~gH~~ 361 (485)
.|++++.|++|++||+.+++... .+.+|...|.+++|+|+ +++|++++ |++|+|||++ ++++.+ +.+|..
T Consensus 163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~ 242 (450)
T 2vdu_B 163 TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKH 242 (450)
T ss_dssp EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSS
T ss_pred EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCC
Confidence 99999999999999999988655 88899999999999999 99999999 9999999996 888887 669988
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
+ |.+++|+ ||++|+|++. |++|+|||+.+|+++.++..|.... ..|....
T Consensus 243 ~-----v~~~~~s-d~~~l~s~~~-----------d~~v~vwd~~~~~~~~~~~~~~~~~-------------~~~~~~~ 292 (450)
T 2vdu_B 243 F-----VSSICCG-KDYLLLSAGG-----------DDKIFAWDWKTGKNLSTFDYNSLIK-------------PYLNDQH 292 (450)
T ss_dssp C-----EEEEEEC-STTEEEEEES-----------SSEEEEEETTTCCEEEEEECHHHHG-------------GGCCTTS
T ss_pred c-----eEEEEEC-CCCEEEEEeC-----------CCeEEEEECCCCcEeeeecchhhhh-------------hhhhhcc
Confidence 7 9999999 9999999997 7999999999999999997653100 0000000
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEec-CCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~DgtVklWd~ 485 (485)
+................|.+|+|+||++.|++++ .|++|+||++
T Consensus 293 ~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 293 LAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp BC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred cccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 0000000000001113799999999999999999 9999999983
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=311.78 Aligned_cols=237 Identities=14% Similarity=0.175 Sum_probs=201.9
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecC--CCeEEEEEcC--CcEEEEEEcCC--ceEEEEEcCCCCeeEEEEec
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISD--KNVQEIKISPG--IMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~--~g~~l~tl~~--~~V~~VafSpg--~~ll~sss~~~D~tIklWdi 264 (485)
|...+..++|+ |+|++|++|+.|++|+|||+. +++++.++.+ ..|.+|+|+|+ +.++++++ .|++|++||+
T Consensus 8 H~~~V~~l~~s-~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s--~Dg~I~vwd~ 84 (753)
T 3jro_A 8 HNELIHDAVLD-YYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCS--YDGKVLIWKE 84 (753)
T ss_dssp CCCCEEEECCC-SSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEE--TTSCEEEEEE
T ss_pred CcceeEEEEEC-CCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEe--CCCeEEEEEC
Confidence 56677899998 799999999999999999998 4567777764 58999999964 55555544 3589999999
Q ss_pred CCCe--EEEEeecCCcceeEEEEEecC--CCEEEEEeCCCcEEEEECCCCe--eEEecccCCCceEEEEEcC--------
Q 011452 265 EDGT--VLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRNFE--LTEVSRTEFMTPSAFIFLY-------- 330 (485)
Q Consensus 265 ~tG~--~L~tl~~~~~~~~~V~f~~~~--~~~lls~s~D~tIkIWDv~tg~--~~~~l~gh~~~v~avaFsp-------- 330 (485)
.+|+ .+..+.+|...+..|+|+ |+ +..+++++.|++|+|||++++. ....+.+|...|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~h~~~V~~v~~s-p~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~ 163 (753)
T 3jro_A 85 ENGRWSQIAVHAVHSASVNSVQWA-PHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (753)
T ss_dssp ETTEEEEEEEECCCSSCEEEEEEC-CGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC------
T ss_pred CCCcccccccccCCCCCeEEEEEC-CCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccc
Confidence 9998 788899999999999997 55 7889999999999999999883 4556678999999999999
Q ss_pred -----CCcEEEEEe-CCcEEEEeCC-C----cEEEEeecCCCCCCCCCeeEEEECCC---CCEEEEEecCCCCCCCCcCC
Q 011452 331 -----ENQLFLTFR-NRTVAVWNFR-G----ELVTSFEDHLLWHPDCNTNNIYITSD---QDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 331 -----dg~llaS~s-D~TIklWd~~-G----~ll~tl~gH~~~~~~~~v~svafSpD---G~~LaS~s~d~~~d~~~~~~ 396 (485)
++++|++++ |++|++||++ + +++.++.+|... |.+++|+|+ |++|+|++.
T Consensus 164 ~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~-----V~~l~~sp~~~~~~~l~s~s~----------- 227 (753)
T 3jro_A 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW-----VRDVAWSPTVLLRSYLASVSQ----------- 227 (753)
T ss_dssp ---CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC-----EEEEEECCCCSSSEEEEEEES-----------
T ss_pred cccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc-----EEEEEeccCCCCCCEEEEEec-----------
Confidence 699999999 9999999995 5 678899999987 999999999 999999997
Q ss_pred CCeEEEEeCCCCe-----EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 397 AGSINISNILTGK-----CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 397 DgtIklWdl~TGk-----~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
||+|+|||+.+++ .+....+|. ..|++++|+|||+.|
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~--------------------------------------~~v~~l~~spdg~~l 269 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFP--------------------------------------DVLWRASWSLSGNVL 269 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCS--------------------------------------SCCCCEEECTTTCCE
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCC--------------------------------------CceEEEEEcCCCCEE
Confidence 7999999998864 222222232 389999999999999
Q ss_pred EEecCCCcEEEccC
Q 011452 472 YTGNRHGLVHVWSN 485 (485)
Q Consensus 472 aSgs~DgtVklWd~ 485 (485)
++|+.||+|+||+.
T Consensus 270 ~s~s~Dg~I~vwd~ 283 (753)
T 3jro_A 270 ALSGGDNKVTLWKE 283 (753)
T ss_dssp EEECSSSCEECCBC
T ss_pred EEEcCCCEEEEEec
Confidence 99999999999984
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-32 Score=270.76 Aligned_cols=276 Identities=10% Similarity=0.076 Sum_probs=221.5
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEee----cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN----VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~----g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.+..++|+ +.++++++.|+++++||..+|+.+..+. .+|...|++++|+|+|+.+++++. + +++
T Consensus 124 ~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~----d------~~v 193 (433)
T 3bws_A 124 QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ----A------NAV 193 (433)
T ss_dssp CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG----G------TEE
T ss_pred CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC----C------CEE
Confidence 34466666 7788888899999999999999987432 137778999999999999988663 3 589
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCc-eE
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGI-ML 247 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSpg~-~l 247 (485)
++|++.++++.. .+. .+...+..++|+ |+|+.| ++++.|++|++||+.+++++..+.. ..+..++|+|++ .+
T Consensus 194 ~~~d~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l 268 (433)
T 3bws_A 194 HVFDLKTLAYKA---TVD-LTGKWSKILLYD-PIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKEL 268 (433)
T ss_dssp EEEETTTCCEEE---EEE-CSSSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEE
T ss_pred EEEECCCceEEE---EEc-CCCCCeeEEEEc-CCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEE
Confidence 999998887622 222 234567789998 688776 5666899999999999999888864 579999999866 44
Q ss_pred EEEEcCC-----CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCC
Q 011452 248 LIFTKAS-----GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 248 l~sss~~-----~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
++++... .|++|++||+.+|+++..+. |...+..++|+ |++..++++ +.|++|++||+++++++..+. |..
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~-~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~ 345 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSG-NTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFD 345 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEEC-SSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEEC-CCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCC
Confidence 4443221 36899999999999988874 33567789996 677777665 799999999999999988885 667
Q ss_pred ceEEEEEcCCCcEEEEEe-C---------------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 322 TPSAFIFLYENQLFLTFR-N---------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D---------------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.+.+++|+|||++|++++ + ++|.+||.. ++++.++.++. . +.+++|+|||++|++++
T Consensus 346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGN-Q-----PTGLDVSPDNRYLVISD 419 (433)
T ss_dssp SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSS-S-----EEEEEECTTSCEEEEEE
T ss_pred CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCC-C-----CceEEEcCCCCEEEEEE
Confidence 899999999999888776 3 599999995 99999998753 3 89999999999999887
Q ss_pred cCCCCCCCCcCCCCeEEEEeCC
Q 011452 385 KADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl~ 406 (485)
. .|++|++|++.
T Consensus 420 ~----------~d~~i~v~~~~ 431 (433)
T 3bws_A 420 F----------LDHQIRVYRRD 431 (433)
T ss_dssp T----------TTTEEEEEEET
T ss_pred C----------CCCeEEEEEec
Confidence 4 27999999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=283.18 Aligned_cols=238 Identities=10% Similarity=0.027 Sum_probs=184.8
Q ss_pred ccccccccCCCCccccccccc----------ccccceEEEEEe------cCEEEEEeCCCeEEeeecccCcEEEEeecCC
Q 011452 72 LQEEYDTHDPKGHCSMVLPFL----------RKRSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQRICFLNVTA 135 (485)
Q Consensus 72 l~~~~~~~~~~~~~~~~~~~~----------~~~s~V~~i~~s------~~~ias~s~dgtiklW~~~tG~~l~tl~g~~ 135 (485)
+-..+.-|..|+...++.|+- .+...|..|+++ ++++++++++ +++|++.+|+++++.-.+|
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g~ 155 (356)
T 2w18_A 78 KLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTLS 155 (356)
T ss_dssp EEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEE--EEEEEETTTEEEEEESSST
T ss_pred eeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCe--EEEEecCCCcEEEecccCC
Confidence 445667777788887777721 256679999999 4688888854 8889999999999854449
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC--CCeEEEEeeC
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV--NGKVLTYSAQ 213 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p--nG~~Las~s~ 213 (485)
+..|+.++|+|+|+.+++- .+ +. ..+..++|++. +|.+|||+|.
T Consensus 156 d~~V~~~~~s~dG~~~~s~----------------------~~--------~~----~~v~~l~fs~~~g~~~~LaSgS~ 201 (356)
T 2w18_A 156 DQQVEVMTFAEDGGGKENQ----------------------FL--------MP----PEETILTFAEVQGMQEALLGTTI 201 (356)
T ss_dssp TCEEEEEEECTTSCEEEEE----------------------EE--------CC----CSSCEEEEEEEETSTTEEEEEET
T ss_pred CCcEEEEEECCCCceeeee----------------------cc--------CC----CceeeEEeeccCCCCceEEEecC
Confidence 9999999999999977540 01 11 23346777732 7799999999
Q ss_pred CCcEEEeecCCCeEEEEEcCC-----cEEEEEEcCCceEEEE----------EcCCCCeeEEEEecCCCeEEEEee----
Q 011452 214 DSIYKVFDLKNYTMLYSISDK-----NVQEIKISPGIMLLIF----------TKASGHVPLKILSIEDGTVLKSFN---- 274 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~~~-----~V~~VafSpg~~ll~s----------ss~~~D~tIklWdi~tG~~L~tl~---- 274 (485)
|+||||||+++|+++++++++ .|..++|||++.++++ ++++.|++||+||..+|+++.++.
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p 281 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLP 281 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCC
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeecc
Confidence 999999999999999999742 5778899998777643 234678999999999999998873
Q ss_pred -cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceE-EEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 275 -HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS-AFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 275 -~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~-avaFspdg~llaS~s-D~TIklWd~ 348 (485)
+|.....+.++. +..+++++.|+||||||+++|++++++.+|...+. .++|||||++|+|++ |+||||||+
T Consensus 282 ~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 282 PGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 554444444443 56777889999999999999999999999988766 589999999999999 999999995
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-31 Score=273.35 Aligned_cols=281 Identities=11% Similarity=0.099 Sum_probs=218.6
Q ss_pred CEEEEEe----CCC----eEEeeec--ccCcEE--EEeecCCcccEEEEEEee--------------CCCEEEEEEeecC
Q 011452 106 DIVFALA----QSG----VCAAFCR--ETNQRI--CFLNVTADEVIRSLFYNK--------------NNDSLITVSVYAS 159 (485)
Q Consensus 106 ~~ias~s----~dg----tiklW~~--~tG~~l--~tl~g~~~~~i~sv~~sp--------------dg~~Las~S~d~~ 159 (485)
+.+++++ .|| +++|||. .+|+++ .++.+ |...++.+++++ ++..|+.++.+..
T Consensus 76 ~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~ 154 (415)
T 2hqs_A 76 DAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKV-NKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNG 154 (415)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEE-CGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSS
T ss_pred CEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEc-ChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCC
Confidence 5666665 567 9999999 999988 45777 777899998886 3778888886533
Q ss_pred CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC---cEEEeecCCCeEEEEE-cCCc
Q 011452 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSI-SDKN 235 (485)
Q Consensus 160 ~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~---tiKlWdl~~g~~l~tl-~~~~ 235 (485)
++ ...++++||+..+++ ..+.. +...+..++|+ |||+.||+++.|+ +|++||+.++++.... +...
T Consensus 155 ~~----~~~~i~i~d~~g~~~---~~l~~--~~~~v~~~~~S-pdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~ 224 (415)
T 2hqs_A 155 GQ----FPYELRVSDYDGYNQ---FVVHR--SPQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH 224 (415)
T ss_dssp SS----CCEEEEEEETTSCSC---EEEEE--ESSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC
T ss_pred CC----ccceEEEEcCCCCCC---EEEeC--CCCcceeeEEc-CCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc
Confidence 31 015899999753333 22333 34567789998 8999999999885 9999999999876433 3457
Q ss_pred EEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CC--cEEEEECCCCe
Q 011452 236 VQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRNFE 311 (485)
Q Consensus 236 V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~--tIkIWDv~tg~ 311 (485)
+.+++|||++. ++.+++.+.+..|++||+++|++ ..+..|...+..++|+ |++..|++++. ++ .|.+||+.+++
T Consensus 225 ~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 225 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred ccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCC
Confidence 99999999776 55465555567899999999887 6777777888999996 78888988875 55 67777999888
Q ss_pred eEEecccCCCceEEEEEcCCCcEEEEEe-C---CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQLFLTFR-N---RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~llaS~s-D---~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
+.. +..|...+.+++|+|||++|++++ + .+|.+||++ |++ ..+..|. . +.+++|+|||++|++++.+
T Consensus 303 ~~~-l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~-----~~~~~~spdg~~l~~~s~~ 374 (415)
T 2hqs_A 303 PQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L-----DETPSLAPNGTMVIYSSSQ 374 (415)
T ss_dssp CEE-CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S-----CEEEEECTTSSEEEEEEEE
T ss_pred EEE-EecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C-----cCCeEEcCCCCEEEEEEcC
Confidence 644 456777899999999999999887 5 489999997 665 5677764 4 8999999999999999872
Q ss_pred CCCCCCCcCCCC--eEEEEeCCCCeEEEEecCCC
Q 011452 387 DSDDPLAEGNAG--SINISNILTGKCLAKIRASN 418 (485)
Q Consensus 387 ~~~d~~~~~~Dg--tIklWdl~TGk~l~tl~gH~ 418 (485)
++ .|.+||+. |+++..|.+|.
T Consensus 375 ----------~~~~~l~~~d~~-g~~~~~l~~~~ 397 (415)
T 2hqs_A 375 ----------GMGSVLNLVSTD-GRFKARLPATD 397 (415)
T ss_dssp ----------TTEEEEEEEETT-SCCEEECCCSS
T ss_pred ----------CCccEEEEEECC-CCcEEEeeCCC
Confidence 22 89999986 78889999987
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=307.29 Aligned_cols=248 Identities=9% Similarity=0.057 Sum_probs=199.3
Q ss_pred EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC--CeE
Q 011452 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN--GKV 207 (485)
Q Consensus 130 tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn--G~~ 207 (485)
++.+ |.+.|++++|+|+|+.||+++. | ++++||++..+.... ...+. .|...+.+|+|+ |+ |++
T Consensus 4 ~l~g-H~~~V~~l~~s~dg~~latg~~----d------g~I~vwd~~~~~~~~-~~~l~-~h~~~V~~l~~s-~~~~~~~ 69 (753)
T 3jro_A 4 IANA-HNELIHDAVLDYYGKRLATCSS----D------KTIKIFEVEGETHKL-IDTLT-GHEGPVWRVDWA-HPKFGTI 69 (753)
T ss_dssp -----CCCCEEEECCCSSSCCEEEEET----T------TEEEEEEEETTEEEE-EEEEC-CCSSCEEEEEEC-CTTSCSE
T ss_pred eccc-CcceeEEEEECCCCCeEEEEEC----C------CcEEEEecCCCCCcc-ceecc-CCcCceEEEEec-CCCCCCE
Confidence 4555 8899999999999999999774 4 599999987433211 11222 345667789997 45 999
Q ss_pred EEEeeCCCcEEEeecCCCe--EEEEEc--CCcEEEEEEcCC--ceEEEEEcCCCCeeEEEEecCCCe--EEEEeecCCcc
Q 011452 208 LTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGT--VLKSFNHLLHR 279 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~--~l~tl~--~~~V~~VafSpg--~~ll~sss~~~D~tIklWdi~tG~--~L~tl~~~~~~ 279 (485)
|++|+.|++|+|||+.+++ .+..+. ...|.+++|+|+ +.++++++ .|++|++||+.++. ....+.+|...
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~ 147 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIG 147 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSC
T ss_pred EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCc
Confidence 9999999999999999987 566664 468999999986 65555554 45899999999883 44567788899
Q ss_pred eeEEEEEec------------CCCEEEEEeCCCcEEEEECCCC----eeEEecccCCCceEEEEEcCC---CcEEEEEe-
Q 011452 280 NKKVDFIEQ------------FNEKLLVKQENENLQILDVRNF----ELTEVSRTEFMTPSAFIFLYE---NQLFLTFR- 339 (485)
Q Consensus 280 ~~~V~f~~~------------~~~~lls~s~D~tIkIWDv~tg----~~~~~l~gh~~~v~avaFspd---g~llaS~s- 339 (485)
+..++|++. ++..+++++.|++|+|||++++ .+...+.+|...|.+++|+|+ +++|+|++
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~ 227 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 227 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec
Confidence 999999753 5788999999999999999987 677888999999999999999 99999999
Q ss_pred CCcEEEEeCC-Cc-----EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 340 NRTVAVWNFR-GE-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 340 D~TIklWd~~-G~-----ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|++|++||++ ++ .+....+|... |.+++|+|||++|++++. ||+|+|||+.++.
T Consensus 228 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-----v~~l~~spdg~~l~s~s~-----------Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 228 DRTCIIWTQDNEQGPWKKTLLKEEKFPDV-----LWRASWSLSGNVLALSGG-----------DNKVTLWKENLEG 287 (753)
T ss_dssp SSCEEEEEESSSSSCCBCCBSSSSCCSSC-----CCCEEECTTTCCEEEECS-----------SSCEECCBCCSSS
T ss_pred CCEEEEecCCCCCCcceeEEeccCCCCCc-----eEEEEEcCCCCEEEEEcC-----------CCEEEEEecCCCC
Confidence 9999999996 53 33334456555 899999999999999986 7999999998654
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-32 Score=291.68 Aligned_cols=315 Identities=8% Similarity=0.063 Sum_probs=239.4
Q ss_pred ccceEEEEEe--cCEEEEEeC-CC-----eEEeeecccCcEEEEeecCCc-----------------------ccEEEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQ-SG-----VCAAFCRETNQRICFLNVTAD-----------------------EVIRSLF 143 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~-dg-----tiklW~~~tG~~l~tl~g~~~-----------------------~~i~sv~ 143 (485)
...|.+++|+ |++||+++. |+ ++++||+++|+....+..... ..|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 3456677777 999999998 88 999999999998776654211 2388999
Q ss_pred EeeCCCEEEEEEeecCCCCcccceeEEEEeEeccC---CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEe
Q 011452 144 YNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG---KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (485)
Q Consensus 144 ~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G---~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlW 220 (485)
|||||+.|++++. .++.+|++..| ++. .+.. +...+..++|| |||+.||+++ +++|++|
T Consensus 116 ~SpDg~~l~~~~~-----------~~i~~~d~~~~~~~~~~---~l~~--~~~~~~~~~~S-PDG~~la~~~-~~~i~~~ 177 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-----------GELYLYDLKQEGKAAVR---QLTH--GEGFATDAKLS-PKGGFVSFIR-GRNLWVI 177 (741)
T ss_dssp ECTTSSEEEEEET-----------TEEEEEESSSCSTTSCC---BCCC--SSSCEEEEEEC-TTSSEEEEEE-TTEEEEE
T ss_pred ECCCCCEEEEEeC-----------CcEEEEECCCCCcceEE---Eccc--CCcccccccCC-CCCCEEEEEe-CCcEEEE
Confidence 9999999998773 48999999887 541 2332 23456789998 8999999988 5699999
Q ss_pred ecCCCeEEEEEcC--Cc----------------EEEEEEcCCceEEEEEcCCC---------------------------
Q 011452 221 DLKNYTMLYSISD--KN----------------VQEIKISPGIMLLIFTKASG--------------------------- 255 (485)
Q Consensus 221 dl~~g~~l~tl~~--~~----------------V~~VafSpg~~ll~sss~~~--------------------------- 255 (485)
|+.+++....... .. +..++|||++..+++++.+.
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g 257 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAG 257 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTT
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCC
Confidence 9999987654432 11 47899999776555543321
Q ss_pred ----CeeEEEEecCC-CeEEEEee--cCCcceeEEEEEecCCCEEEEEe-----CCCcEEEEECCCCeeEEecccCCC--
Q 011452 256 ----HVPLKILSIED-GTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQ-----ENENLQILDVRNFELTEVSRTEFM-- 321 (485)
Q Consensus 256 ----D~tIklWdi~t-G~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s-----~D~tIkIWDv~tg~~~~~l~gh~~-- 321 (485)
...|.+||+.+ |++..... .|...+..++| |++..|++.+ .+.+|.+||+.++++..++.+|..
T Consensus 258 ~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~ 335 (741)
T 2ecf_A 258 DANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTW 335 (741)
T ss_dssp SCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSC
T ss_pred CCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCc
Confidence 12889999999 98766543 36677889999 6788888764 468899999999999888876653
Q ss_pred --ceEEEEEcCCCcEEEEEe-CCcEEEEeC--CCcEEEEeecCCCCCCCCCeeEE-EECCCCCEEEEEecCCCCCCCCcC
Q 011452 322 --TPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNI-YITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 322 --~v~avaFspdg~llaS~s-D~TIklWd~--~G~ll~tl~gH~~~~~~~~v~sv-afSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
.+..++|+|||+++++++ |++++||.+ +|+ +..|.+|... |.++ +|||||++|+..+.+
T Consensus 336 ~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~-----v~~~~~~s~dg~~l~~~~~~--------- 400 (741)
T 2ecf_A 336 VPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWS-----VDELLAVDEKAGLAYFRAGI--------- 400 (741)
T ss_dssp CCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSC-----EEEEEEEETTTTEEEEEECS---------
T ss_pred CCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceE-----EEeEeEEeCCCCEEEEEEeC---------
Confidence 346889999999999988 998888876 477 8899988655 7787 599999988655431
Q ss_pred CCC--eEEEEeCCC-CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 396 NAG--SINISNILT-GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 396 ~Dg--tIklWdl~T-Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
++ +++||++.. |+++..|.+ . ..|.+++|||||+.|+
T Consensus 401 -~~~~~~~l~~~~~~g~~~~~l~~-~--------------------------------------~~~~~~~~spdg~~l~ 440 (741)
T 2ecf_A 401 -ESARESQIYAVPLQGGQPQRLSK-A--------------------------------------PGMHSASFARNASVYV 440 (741)
T ss_dssp -SCTTCBEEEEEETTCCCCEECCC-S--------------------------------------CSEEEEEECTTSSEEE
T ss_pred -CCCceEEEEEEEcCCCCeeeccc-C--------------------------------------CCceEEEECCCCCEEE
Confidence 34 899999864 777777765 2 1788999999999988
Q ss_pred EecCC----CcEEEcc
Q 011452 473 TGNRH----GLVHVWS 484 (485)
Q Consensus 473 Sgs~D----gtVklWd 484 (485)
....+ ..+.+|+
T Consensus 441 ~~~~~~~~p~~~~l~~ 456 (741)
T 2ecf_A 441 DSWSNNSTPPQIELFR 456 (741)
T ss_dssp EEEEETTEEEEEEEEE
T ss_pred EEecCCCCCCeEEEEE
Confidence 76543 3466664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=273.12 Aligned_cols=252 Identities=11% Similarity=0.083 Sum_probs=200.6
Q ss_pred cCcEEEEeecCCcccEEEEEEeeC-CCEEEEEEeecCCCCcccceeEEEEeEecc--------CCcCcccceeee-cccc
Q 011452 124 TNQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTRIEYIRR--------GKPDAGFALFES-ESLK 193 (485)
Q Consensus 124 tG~~l~tl~g~~~~~i~sv~~spd-g~~Las~S~d~~~d~stL~~~t~~lw~i~~--------G~~~~~~~lf~~-~~~~ 193 (485)
+++........|...|.+++|+|+ ++.||+++ .+ ++++||++.. ++. .++... .+..
T Consensus 116 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~----~d------g~V~vwd~~~~~~~~~~~~~~---~~~~~~~~h~~ 182 (430)
T 2xyi_A 116 CGKIEIEIKINHEGEVNRARYMPQNACVIATKT----PS------SDVLVFDYTKHPSKPEPSGEC---QPDLRLRGHQK 182 (430)
T ss_dssp --CEEEEEEEEESSCCSEEEEETTEEEEEEEEC----SS------SCEEEEEGGGSCSSCCTTCCC---CCSEEEECCSS
T ss_pred CCceEEEEEEcCCCcEEEEEECCCCCcEEEEEC----CC------CcEEEEECCCcccccCccccC---CCcEEecCCCC
Confidence 344432333348889999999998 67787765 34 5899999965 222 112221 3445
Q ss_pred CceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeE-------EEEE--cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEE
Q 011452 194 WPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTM-------LYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 194 ~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~-------l~tl--~~~~V~~VafSp-g~~ll~sss~~~D~tIklW 262 (485)
.+..++|+ |+++ +|++++.|++|+|||+.++.. ...+ +...|.+|+|+| ++.++++++ .|++|++|
T Consensus 183 ~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~--~dg~i~i~ 259 (430)
T 2xyi_A 183 EGYGLSWN-PNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA--DDQKLMIW 259 (430)
T ss_dssp CCCCEEEC-TTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE--TTSEEEEE
T ss_pred CeEEEEeC-CCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe--CCCeEEEE
Confidence 56789998 6888 999999999999999987431 2334 345799999998 666666654 34899999
Q ss_pred ecCCC---eEEEEeecCCcceeEEEEEecCCC-EEEEEeCCCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCc-EEE
Q 011452 263 SIEDG---TVLKSFNHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQ-LFL 336 (485)
Q Consensus 263 di~tG---~~L~tl~~~~~~~~~V~f~~~~~~-~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~-lla 336 (485)
|+.++ +++.++..|...+..|+|+ |++. .+++++.|++|+|||+++ ++++..+.+|...|.+++|+|+++ +|+
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~-p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeC-CCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 99988 6888898899999999997 5565 577789999999999998 677888999999999999999995 799
Q ss_pred EEe-CCcEEEEeCCC---------------cEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCe
Q 011452 337 TFR-NRTVAVWNFRG---------------ELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 337 S~s-D~TIklWd~~G---------------~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+++ |++|+|||+.. +++..+.+|... |+.++|+|+++ +|+|++. ||+
T Consensus 339 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~l~s~s~-----------dg~ 402 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAK-----ISDFSWNPNEPWIICSVSE-----------DNI 402 (430)
T ss_dssp EEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSC-----EEEEEECSSSTTEEEEEET-----------TSE
T ss_pred EEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCC-----ceEEEECCCCCCEEEEEEC-----------CCC
Confidence 998 99999999953 789999999887 99999999999 9999986 799
Q ss_pred EEEEeCCCC
Q 011452 400 INISNILTG 408 (485)
Q Consensus 400 IklWdl~TG 408 (485)
|+||++.++
T Consensus 403 i~iw~~~~~ 411 (430)
T 2xyi_A 403 MQVWQMAEN 411 (430)
T ss_dssp EEEEEECHH
T ss_pred EEEeEcccc
Confidence 999998754
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=4.6e-30 Score=274.88 Aligned_cols=295 Identities=6% Similarity=-0.000 Sum_probs=230.4
Q ss_pred eEEEEEe--cCEEEEEeCCCeEEeeec--ccCcEEEEeecCCcccEEEEEEee----CCCEEEEEEeecCCCCcccceeE
Q 011452 98 IIEIVAA--RDIVFALAQSGVCAAFCR--ETNQRICFLNVTADEVIRSLFYNK----NNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 98 V~~i~~s--~~~ias~s~dgtiklW~~--~tG~~l~tl~g~~~~~i~sv~~sp----dg~~Las~S~d~~~d~stL~~~t 169 (485)
+..++|+ |++|++++.|++|++||+ .+++++.++.. ....++|+||| ||++|++++.. + .+
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~--g~~p~~va~sp~~~~dg~~l~v~~~~---~------~~ 249 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI--GIEARSVESSKFKGYEDRYTIAGAYW---P------PQ 249 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC--CSEEEEEEECCSTTCTTTEEEEEEEE---S------SE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec--CCCcceEEeCCCcCCCCCEEEEEEcc---C------Ce
Confidence 7778888 999999999999999999 89999999875 33589999999 99999987742 2 58
Q ss_pred EEEeEeccCCcCcccceeeec-------cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--EEc-CCcEEEE
Q 011452 170 TRIEYIRRGKPDAGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SIS-DKNVQEI 239 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~-------~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~--tl~-~~~V~~V 239 (485)
+.|||..++++.+...+-... .-.++..+.|++.++.++++...|++|.+||+.+++.+. ++. +..+..+
T Consensus 250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~ 329 (543)
T 1nir_A 250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG 329 (543)
T ss_dssp EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence 999999888874322211100 012466899985466778888999999999998876443 443 5678899
Q ss_pred EEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeec----CCcceeEEEEEecCCCEEEEE-e-CCCcEEEEECCC---
Q 011452 240 KISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNH----LLHRNKKVDFIEQFNEKLLVK-Q-ENENLQILDVRN--- 309 (485)
Q Consensus 240 afSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~----~~~~~~~V~f~~~~~~~lls~-s-~D~tIkIWDv~t--- 309 (485)
+|+|++. +++++.. +.+|++||+++|++++++.. |.+ ..+.|..|+++.++++ + .|++|+|||+.+
T Consensus 330 ~~spdg~~l~va~~~--~~~v~v~D~~tg~l~~~i~~g~~ph~g--~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 330 GWDSSHRYFMTAANN--SNKVAVIDSKDRRLSALVDVGKTPHPG--RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp EECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSBCCT--TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred eECCCCCEEEEEecC--CCeEEEEECCCCeEEEeeccCCCCCCC--CCcccCCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 9999776 4555443 47999999999999999984 332 2344544665666555 3 689999999999
Q ss_pred ----CeeEEecccCCCceEEEEEcCCCcEEEEEe--------CCcEEEEeCC-CcEE-EEe--------ecCCCCCCCCC
Q 011452 310 ----FELTEVSRTEFMTPSAFIFLYENQLFLTFR--------NRTVAVWNFR-GELV-TSF--------EDHLLWHPDCN 367 (485)
Q Consensus 310 ----g~~~~~l~gh~~~v~avaFspdg~llaS~s--------D~TIklWd~~-G~ll-~tl--------~gH~~~~~~~~ 367 (485)
.++++++.+|...+..++|+|||+.|.+++ +++|+|||++ ++++ ..| ..|...
T Consensus 406 ~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~----- 480 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR----- 480 (543)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE-----
T ss_pred chhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc-----
Confidence 899999999999999999999999999986 5799999996 8876 554 344444
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
+..++|+|||+.|..+....+ +.|++|.|||.+|++|+++|+++.
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~------~~~~~i~v~D~~t~~~~~~i~~~~ 525 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGK------NDSSALVVVDDKTLKLKAVVKDPR 525 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCT------TSCCEEEEEETTTTEEEEEECCTT
T ss_pred eEeccCCCCCCEEEEEeecCC------CCCCeEEEEECCCceEEEeecCCC
Confidence 899999999999998754111 237999999999999999998754
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=279.88 Aligned_cols=319 Identities=9% Similarity=-0.008 Sum_probs=225.1
Q ss_pred CCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcc---cEEEEEEeeCCCEEEEEEee
Q 011452 81 PKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADE---VIRSLFYNKNNDSLITVSVY 157 (485)
Q Consensus 81 ~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~---~i~sv~~spdg~~Las~S~d 157 (485)
.+.....++|+ |+++++ +.||++++||..+|++...+.+ |.. .|.+++|||||+.||+++.+
T Consensus 17 ~~~~~~~~spd-------------g~~~~~-~~dg~i~~~d~~~g~~~~~~~~-~~~~~~~v~~~~~SpDg~~l~~~~~~ 81 (723)
T 1xfd_A 17 IHDPEAKWISD-------------TEFIYR-EQKGTVRLWNVETNTSTVLIEG-KKIESLRAIRYEISPDREYALFSYNV 81 (723)
T ss_dssp CCCCCCCBSSS-------------SCBCCC-CSSSCEEEBCGGGCCCEEEECT-TTTTTTTCSEEEECTTSSEEEEEESC
T ss_pred ccccccEEcCC-------------CcEEEE-eCCCCEEEEECCCCcEEEEecc-ccccccccceEEECCCCCEEEEEecC
Confidence 34556666777 887766 8899999999999998877765 443 49999999999999998754
Q ss_pred cCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--C
Q 011452 158 ASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K 234 (485)
Q Consensus 158 ~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~ 234 (485)
.... ..=...++.||++..|++ ..+-.. .+...+..++|| |||+.||+++. ++|++||+.++++...... .
T Consensus 82 ~~~~-~~~~~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~~~~S-PdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~ 155 (723)
T 1xfd_A 82 EPIY-QHSYTGYYVLSKIPHGDP---QSLDPPEVSNAKLQYAGWG-PKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE 155 (723)
T ss_dssp CCCS-SSCCCSEEEEEESSSCCC---EECCCTTCCSCCCSBCCBC-SSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT
T ss_pred ccce-eecceeeEEEEECCCCce---EeccCCccccccccccEEC-CCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC
Confidence 3210 000125888999988876 112211 122235678998 89999999985 8999999999887655432 2
Q ss_pred cE------------------EEEEEcCCceEEEEEcCCC--------------------------------CeeEEEEec
Q 011452 235 NV------------------QEIKISPGIMLLIFTKASG--------------------------------HVPLKILSI 264 (485)
Q Consensus 235 ~V------------------~~VafSpg~~ll~sss~~~--------------------------------D~tIklWdi 264 (485)
.| .+++|||++..+++++.+. +.+|++||+
T Consensus 156 ~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~ 235 (723)
T 1xfd_A 156 GVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGL 235 (723)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEES
T ss_pred CceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEEC
Confidence 23 7899999776555544221 348999999
Q ss_pred CCCeEEEEeecC------CcceeEEEEEecCCCEEEEEe----CCCcEEEEECCCCeeEEeccc-CCCceE----EEEEc
Q 011452 265 EDGTVLKSFNHL------LHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNFELTEVSRT-EFMTPS----AFIFL 329 (485)
Q Consensus 265 ~tG~~L~tl~~~------~~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg~~~~~l~g-h~~~v~----avaFs 329 (485)
.+|++...+..+ ...+..++|+ ||+..|++.+ .+.+|++||+.++++...+.. |..++. .++||
T Consensus 236 ~~~~~~~~l~~~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 314 (723)
T 1xfd_A 236 NGPTHDLEMMPPDDPRMREYYITMVKWA-TSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS 314 (723)
T ss_dssp SSSCCCEECCCCCCGGGSSEEEEEEEES-SSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC
T ss_pred CCCceeEEeeCCccCCCccceeEEEEEe-CCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEc
Confidence 999987777754 5567899997 6676665553 347899999999998887644 444443 78999
Q ss_pred CCCcEEEEE--e-CC------cEEEEe-CCCcE---EEEeecCCCCCCCCCeeE-EEECCCCCEEEEEecCCCCCCCCcC
Q 011452 330 YENQLFLTF--R-NR------TVAVWN-FRGEL---VTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 330 pdg~llaS~--s-D~------TIklWd-~~G~l---l~tl~gH~~~~~~~~v~s-vafSpDG~~LaS~s~d~~~d~~~~~ 395 (485)
|||+.|+.. . |+ .|.+|| ..+.. +..|..+... +.. ++|||||++|+..+.+
T Consensus 315 pdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~-----~~~~~~~spdg~~l~~~~~~--------- 380 (723)
T 1xfd_A 315 KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWD-----VTKILAYDEKGNKIYFLSTE--------- 380 (723)
T ss_dssp TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSC-----EEEEEEEETTTTEEEEEESS---------
T ss_pred CCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeE-----EEeeeEEcCCCCEEEEEEcC---------
Confidence 999977753 3 77 577788 45443 6666643222 444 6999999999877651
Q ss_pred CC--CeEEEEeCCCC--eEEEEecC---CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 396 NA--GSINISNILTG--KCLAKIRA---SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 396 ~D--gtIklWdl~TG--k~l~tl~g---H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
+ ++++||++..+ .....|.+ |. ..|..++|||||
T Consensus 381 -~~~~~~~l~~~~~~~~~~~~~l~~~~~~~--------------------------------------~~~~~~~~spdg 421 (723)
T 1xfd_A 381 -DLPRRRQLYSANTVGNFNRQCLSCDLVEN--------------------------------------CTYFSASFSHSM 421 (723)
T ss_dssp -SCTTCCEEEEECSSTTCCCBCSSTTSSSS--------------------------------------CCCCEEEECTTS
T ss_pred -CCCcceEEEEEeCCCCCCcceecccccCC--------------------------------------CCeEEEEECCCC
Confidence 3 78999998643 23334433 22 267889999999
Q ss_pred CEEEEe
Q 011452 469 NEIYTG 474 (485)
Q Consensus 469 ~~LaSg 474 (485)
+.|+..
T Consensus 422 ~~l~~~ 427 (723)
T 1xfd_A 422 DFFLLK 427 (723)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 987754
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-28 Score=234.26 Aligned_cols=274 Identities=8% Similarity=0.022 Sum_probs=215.0
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe-EEEEeeCCC
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK-VLTYSAQDS 215 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~-~Las~s~D~ 215 (485)
..+..++|+|+|+.|++++..+. ...+..++.+||..+|+... .+.. ...+..++|+ |+|+ +++++..++
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~---~~~~~~~v~~~d~~~~~~~~---~~~~--~~~~~~~~~s-~dg~~l~v~~~~~~ 111 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSR---KLDKGGVVYRLDPVTLEVTQ---AIHN--DLKPFGATIN-NTTQTLWFGNTVNS 111 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCT---TTEESEEEEEECTTTCCEEE---EEEE--SSCCCSEEEE-TTTTEEEEEETTTT
T ss_pred cCccceEECCCCCEEEEEcCCCc---CCCCCccEEEEcCCCCeEEE---EEec--CCCcceEEEC-CCCCEEEEEecCCC
Confidence 35789999999999988775321 11112689999998888632 2322 2346689998 7887 566667789
Q ss_pred cEEEeecCCCeEEEEEcCC-----------cEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 216 IYKVFDLKNYTMLYSISDK-----------NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~~~-----------~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
+|.+||+++++.+.++... .+.+++|||++. ++++. ...+..|.+||+++++.+..+..+......+
T Consensus 112 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 190 (353)
T 3vgz_A 112 AVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG-IGKESVIWVVDGGNIKLKTAIQNTGKMSTGL 190 (353)
T ss_dssp EEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE-ESSSCEEEEEETTTTEEEEEECCCCTTCCCC
T ss_pred EEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe-cCCCceEEEEcCCCCceEEEecCCCCccceE
Confidence 9999999999988887532 278999998654 54443 2335799999999999999998555667889
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc----CCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEe
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT----EFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g----h~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl 356 (485)
+|+ |++.+++++..|+.|.+||+.+++.+..+.. +...+..++|+|||+.|+.++ +++|.+||.. |+++..+
T Consensus 191 ~~s-~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 191 ALD-SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp EEE-TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred EEC-CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 997 7888999999999999999999998877653 566788999999999666555 6999999995 9999888
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
..+. -..++|+|||++|+.++. .+++|.+||+.+++.+.++..+.
T Consensus 270 ~~~~-------~~~~~~s~dg~~l~v~~~----------~~~~v~~~d~~~~~~~~~~~~~~------------------ 314 (353)
T 3vgz_A 270 AAPE-------SLAVLFNPARNEAYVTHR----------QAGKVSVIDAKSYKVVKTFDTPT------------------ 314 (353)
T ss_dssp ECSS-------CCCEEEETTTTEEEEEET----------TTTEEEEEETTTTEEEEEEECCS------------------
T ss_pred EcCC-------CceEEECCCCCEEEEEEC----------CCCeEEEEECCCCeEEEEEecCC------------------
Confidence 7543 246999999997666553 27999999999999999987653
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.+++++|+|||+.|+.++.+
T Consensus 315 ---------------------~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 315 ---------------------HPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp ---------------------EEEEEEECTTSCEEEEEEEC
T ss_pred ---------------------CCCeEEEcCCCCEEEEEEcc
Confidence 67899999999988777665
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-29 Score=284.21 Aligned_cols=233 Identities=12% Similarity=0.059 Sum_probs=187.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-------------cEEEEEEc-CCceEEEEEcCCCCeeEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------NVQEIKIS-PGIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-------------~V~~VafS-pg~~ll~sss~~~D~tIklW 262 (485)
.++|+ |||+.||+++ |++|.+||+.+.++ ..+..+ .|.+++|| |++..+++.+ +..|.+|
T Consensus 249 ~~~~S-pDG~~la~~~-~~~i~~~d~~~~~l-~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~---~~~i~~~ 322 (1045)
T 1k32_A 249 PRHLN-TDGRRILFSK-GGSIYIFNPDTEKI-EKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS---RGQAFIQ 322 (1045)
T ss_dssp EEEEE-ESSSCEEEEE-TTEEEEECTTTCCE-EECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE---TTEEEEE
T ss_pred eeeEc-CCCCEEEEEe-CCEEEEecCCceEe-eeeccCcccccccccccccccceeeecCCCCCEEEEEE---cCEEEEE
Confidence 56888 7999998875 89999999855443 366542 58899999 9776555544 3689999
Q ss_pred ecCCCeEEEEeecCCc-ceeEEEEEecCCCEEEEEeCCCcEE-EEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-
Q 011452 263 SIEDGTVLKSFNHLLH-RNKKVDFIEQFNEKLLVKQENENLQ-ILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR- 339 (485)
Q Consensus 263 di~tG~~L~tl~~~~~-~~~~V~f~~~~~~~lls~s~D~tIk-IWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s- 339 (485)
++.+|+... +..|.. .+..++|+ ++..|+..+++..|. +||+.++++.... +|...+.+++|||||++||+++
T Consensus 323 ~~~~~~~~~-~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~ 398 (1045)
T 1k32_A 323 DVSGTYVLK-VPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVAND 398 (1045)
T ss_dssp CTTSSBEEE-CSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEET
T ss_pred cCCCCceEE-ccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECC
Confidence 999887654 666666 78889996 778888888888898 9999988876655 8888999999999999999999
Q ss_pred CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 340 NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 340 D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|++|++||++ |++...+++|... +.+++|||||++||+++.+..- ......+++|++||+.+|+ +..+.+|.
T Consensus 399 ~~~v~~~d~~tg~~~~~~~~~~~~-----v~~~~~SpDG~~la~~~~~~~~-~~~~~~~~~i~l~d~~~g~-~~~l~~~~ 471 (1045)
T 1k32_A 399 RFEIMTVDLETGKPTVIERSREAM-----ITDFTISDNSRFIAYGFPLKHG-ETDGYVMQAIHVYDMEGRK-IFAATTEN 471 (1045)
T ss_dssp TSEEEEEETTTCCEEEEEECSSSC-----CCCEEECTTSCEEEEEEEECSS-TTCSCCEEEEEEEETTTTE-EEECSCSS
T ss_pred CCeEEEEECCCCceEEeccCCCCC-----ccceEECCCCCeEEEEecCccc-cccCCCCCeEEEEECCCCc-EEEeeCCC
Confidence 9999999996 8888888888876 8899999999999998762000 0000123699999999988 77888876
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
. .+.+++|+|||+.|++++.++.+++|+
T Consensus 472 ~--------------------------------------~~~~~~~spdG~~l~~~s~~~~~~~~~ 499 (1045)
T 1k32_A 472 S--------------------------------------HDYAPAFDADSKNLYYLSYRSLDPSPD 499 (1045)
T ss_dssp S--------------------------------------BEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred c--------------------------------------ccCCceEcCCCCEEEEEecccCCcCcc
Confidence 2 678899999999999999999988886
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=271.24 Aligned_cols=307 Identities=13% Similarity=0.055 Sum_probs=223.3
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEE-EEeecCCc-----------------ccEEEEEEeeCCCEEEEEEeecCCCC
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRI-CFLNVTAD-----------------EVIRSLFYNKNNDSLITVSVYASDNF 162 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l-~tl~g~~~-----------------~~i~sv~~spdg~~Las~S~d~~~d~ 162 (485)
+.+.++.+++.+.|+ | +||..+|+.+ ..+.. +. ..|.+++|||| ..|+.++ +
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~----~-- 100 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFS-AADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT----Q-- 100 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEE-HHHHHTTC-----------CCCEEEEETTT-TEEEEEE----T--
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeec-hhHhhhhccchhccccccccCceeEEECCC-CeEEEEE----C--
Confidence 444477888888899 7 9999999984 55544 22 35999999999 6665533 2
Q ss_pred cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-----CeEEEEEcC--Cc
Q 011452 163 SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-----YTMLYSISD--KN 235 (485)
Q Consensus 163 stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-----g~~l~tl~~--~~ 235 (485)
.++.+|++.+|++ ..+... ...+..++|| |||+.||++ .|++|++||+.+ ++....... ..
T Consensus 101 -----~~i~~~d~~~~~~---~~l~~~--~~~~~~~~~S-pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~ 168 (706)
T 2z3z_A 101 -----GGLVGFDMLARKV---TYLFDT--NEETASLDFS-PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET 168 (706)
T ss_dssp -----TEEEEEETTTTEE---EEEECC--TTCCTTCEEC-TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT
T ss_pred -----CEEEEEECCCCce---EEccCC--cccccCCcCC-CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC
Confidence 4899999988875 223332 2345678998 899999995 689999999998 876553332 22
Q ss_pred --------------EEEEEEcCCceEEEEEc-------------------------------CCCCeeEEEEecCCCeEE
Q 011452 236 --------------VQEIKISPGIMLLIFTK-------------------------------ASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 236 --------------V~~VafSpg~~ll~sss-------------------------------~~~D~tIklWdi~tG~~L 270 (485)
+.+++|||++..+++++ ...+.+|++||+++|+..
T Consensus 169 ~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~ 248 (706)
T 2z3z_A 169 LVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV 248 (706)
T ss_dssp EEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE
T ss_pred eEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE
Confidence 48999999777666654 124578999999999876
Q ss_pred EEee--cCCcceeEEEEEecCCCEEEEEeCCC-----cEEEEECCCC-eeEEecc-cCCCc---eEEEEEcC--CCcEEE
Q 011452 271 KSFN--HLLHRNKKVDFIEQFNEKLLVKQENE-----NLQILDVRNF-ELTEVSR-TEFMT---PSAFIFLY--ENQLFL 336 (485)
Q Consensus 271 ~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~-----tIkIWDv~tg-~~~~~l~-gh~~~---v~avaFsp--dg~lla 336 (485)
.... .|...+..++|+ |++..|++++.|+ +|++||+.++ ++..... .+..+ +.+++|+| ||++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~ 327 (706)
T 2z3z_A 249 YLQTGEPKEKFLTNLSWS-PDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIW 327 (706)
T ss_dssp ECCCCSCTTCEEEEEEEC-TTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEE
T ss_pred eeccCCCCceeEeeEEEE-CCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEE
Confidence 6553 355667899997 7888898887665 9999999999 4444332 22222 36789999 999999
Q ss_pred EEe-CCcEEEEeC--CCcEEEEeecCCCCCCCCCeeE-EEECCCCCEEEEEecCCCCCCCCcCCCC----eEEEEeCCCC
Q 011452 337 TFR-NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKADSDDPLAEGNAG----SINISNILTG 408 (485)
Q Consensus 337 S~s-D~TIklWd~--~G~ll~tl~gH~~~~~~~~v~s-vafSpDG~~LaS~s~d~~~d~~~~~~Dg----tIklWdl~TG 408 (485)
+++ |++++||.+ +|+.+..+.+|... +.+ ++|+|||+.|+.++.+ ++ .|..||+.+|
T Consensus 328 ~~~~~g~~~l~~~~~~~~~~~~l~~~~~~-----v~~~~~~spdg~~l~~~~~~----------~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 328 QSRRDGWNHLYLYDTTGRLIRQVTKGEWE-----VTNFAGFDPKGTRLYFESTE----------ASPLERHFYCIDIKGG 392 (706)
T ss_dssp EECTTSSCEEEEEETTSCEEEECCCSSSC-----EEEEEEECTTSSEEEEEESS----------SCTTCBEEEEEETTCC
T ss_pred EEccCCccEEEEEECCCCEEEecCCCCeE-----EEeeeEEcCCCCEEEEEecC----------CCCceEEEEEEEcCCC
Confidence 998 999999987 48889999888654 666 8999999998877652 33 6777888877
Q ss_pred eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC----CcEEEcc
Q 011452 409 KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH----GLVHVWS 484 (485)
Q Consensus 409 k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D----gtVklWd 484 (485)
+ +..+. |. ..|.+++|||||+.|+.+..+ +.|++||
T Consensus 393 ~-~~~l~-~~--------------------------------------~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 393 K-TKDLT-PE--------------------------------------SGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp C-CEESC-CS--------------------------------------SSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred C-ceecc-CC--------------------------------------CceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence 6 45554 43 278899999999998877544 5699997
Q ss_pred C
Q 011452 485 N 485 (485)
Q Consensus 485 ~ 485 (485)
.
T Consensus 433 ~ 433 (706)
T 2z3z_A 433 I 433 (706)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=259.46 Aligned_cols=287 Identities=13% Similarity=0.131 Sum_probs=206.3
Q ss_pred cEEEEEEeeCCC-EEEEEEeecCCCCcccceeEEEEeEe--ccCCcCcccceeeeccccCceEEEEeC------------
Q 011452 138 VIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYI--RRGKPDAGFALFESESLKWPGFVEFDD------------ 202 (485)
Q Consensus 138 ~i~sv~~spdg~-~Las~S~d~~~d~stL~~~t~~lw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~------------ 202 (485)
.+....|++.|- .+|+++.....+ -.+ -.+++|||+ .+|+......+.. +..++..++|++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~-G~~-~~~i~lwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPD-GSY-NVAYQLVDTGGAPGTVLAQNSYKV--NKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTT-SCE-EEEEEEEECSSSTTCEEEEEEEEE--CGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCC-CeE-EEEEEEEeCCCCCCCEEeeeEEEc--ChhHHHHHHHHHHHHHHHHHcCCC
Confidence 466667777774 555776542223 000 038999999 8888632111221 223333444431
Q ss_pred -CCCeEEEEeeCC------CcEEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCC-CCeeEEEEecCCCeEEEE
Q 011452 203 -VNGKVLTYSAQD------SIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKAS-GHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 203 -pnG~~Las~s~D------~tiKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~-~D~tIklWdi~tG~~L~t 272 (485)
+.+..|++++.+ ++|++||+.++. +..+ +...|.+++|||++..+++.+.+ .+.+|++||+++|++. .
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCC-CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 125666776654 799999997544 3344 45689999999977655554433 3469999999999986 4
Q ss_pred eecCCcceeEEEEEecCCCEEEE-EeCCC--cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC--cEEE
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLV-KQENE--NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR--TVAV 345 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls-~s~D~--tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~--TIkl 345 (485)
+..|...+..++|+ |++.+|+. ++.|+ .|.+||+.++++ ..+.+|...+.+++|+|||+.|+.++ ++ .|.+
T Consensus 218 l~~~~~~~~~~~~s-pdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 218 VASFPRHNGAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EECCSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred eecCCCcccCEEEc-CCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 66677788999997 78888884 45555 499999999887 45667888999999999999988887 44 6777
Q ss_pred EeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcc
Q 011452 346 WNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENE 425 (485)
Q Consensus 346 Wd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~ 425 (485)
||+.+..+..+..|..+ +.+++|||||++|++++.+ ..+.+|.+||+.+|++. .+..|.
T Consensus 296 ~d~~~~~~~~l~~~~~~-----~~~~~~spdG~~l~~~~~~--------~g~~~i~~~d~~~~~~~-~l~~~~------- 354 (415)
T 2hqs_A 296 VNINGGAPQRITWEGSQ-----NQDADVSSDGKFMVMVSSN--------GGQQHIAKQDLATGGVQ-VLSSTF------- 354 (415)
T ss_dssp EETTSSCCEECCCSSSE-----EEEEEECTTSSEEEEEEEC--------SSCEEEEEEETTTCCEE-ECCCSS-------
T ss_pred EECCCCCEEEEecCCCc-----ccCeEECCCCCEEEEEECc--------CCceEEEEEECCCCCEE-EecCCC-------
Confidence 79874334566666655 8899999999999998862 11368999999999884 566553
Q ss_pred cccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC---cEEEccC
Q 011452 426 CSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG---LVHVWSN 485 (485)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg---tVklWd~ 485 (485)
.+.+++|+|||+.|++++.|+ .|.+||.
T Consensus 355 --------------------------------~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 355 --------------------------------LDETPSLAPNGTMVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp --------------------------------SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred --------------------------------CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence 678999999999999999888 7999873
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-28 Score=235.02 Aligned_cols=277 Identities=9% Similarity=-0.009 Sum_probs=214.9
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcc-cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADE-VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~-~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~ 183 (485)
+++|++++.++++++||..+|+.+.++...+.. .+.+++|+|||+.|+.++. .+ .++.+|++.+|+...
T Consensus 1 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~------~~v~~~d~~~~~~~~- 70 (337)
T 1pby_B 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KS------ESLVKIDLVTGETLG- 70 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TT------TEEEEEETTTCCEEE-
T ss_pred CcEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CC------CeEEEEECCCCCeEe-
Confidence 368999999999999999999999988753422 3789999999988766442 33 589999998888632
Q ss_pred cceeeecc----ccCceEEEEeCCCCeEEEEee------------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce
Q 011452 184 FALFESES----LKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM 246 (485)
Q Consensus 184 ~~lf~~~~----~~~~~~V~Fs~pnG~~Las~s------------~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ 246 (485)
.+.... ...+..++|+ |||+.|+.++ .|+.|.+||+++++.+..+. +..+..++|||++.
T Consensus 71 --~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~ 147 (337)
T 1pby_B 71 --RIDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS 147 (337)
T ss_dssp --EEECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS
T ss_pred --eEEcCCcccccccccceEEC-CCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC
Confidence 122211 1156689998 7998888875 68999999999999888776 45788999999776
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCC-----------------------cE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE-----------------------NL 302 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~-----------------------tI 302 (485)
.+..+ +..|.+||+++|+++..+..+. ....+.|+ |++..+++.+ .++ +|
T Consensus 148 ~l~~~----~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 221 (337)
T 1pby_B 148 KLYGL----GRDLHVMDPEAGTLVEDKPIQS-WEAETYAQ-PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGL 221 (337)
T ss_dssp CEEEE----SSSEEEEETTTTEEEEEECSTT-TTTTTBCC-CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEE
T ss_pred EEEEe----CCeEEEEECCCCcEeeeeeccc-cCCCceeC-CCccEEeeeccCCCceeeeeeccccccccccccccccce
Confidence 44443 2589999999999998887533 11234554 6676665554 333 47
Q ss_pred EEEECCCCeeEE-ecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 303 QILDVRNFELTE-VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 303 kIWDv~tg~~~~-~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
.+||+.++++.. .+..|...+..++|+|||++|+++ |++|.+||+. ++++..+..+. . +.+++|+|||++|
T Consensus 222 ~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~~l 294 (337)
T 1pby_B 222 LTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPLPH-S-----YYSVNVSTDGSTV 294 (337)
T ss_dssp EEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEECSS-C-----CCEEEECTTSCEE
T ss_pred EEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCCcCcceecCCC-c-----eeeEEECCCCCEE
Confidence 999999998752 244566788999999999999888 8999999996 88888887543 2 6799999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++++. +++|++||+.+++.+.++..+.
T Consensus 295 ~~~~~-----------~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 295 WLGGA-----------LGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EEESB-----------SSEEEEEETTTCCEEEEEECGG
T ss_pred EEEcC-----------CCcEEEEECcCCcEEEEEEcCC
Confidence 98865 7999999999999999997764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-28 Score=278.13 Aligned_cols=316 Identities=11% Similarity=0.023 Sum_probs=230.0
Q ss_pred ccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeec--CCCCcccceeEEEE
Q 011452 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYA--SDNFSSLRCRSTRI 172 (485)
Q Consensus 95 ~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~--~~d~stL~~~t~~l 172 (485)
...+..+.|+++.||..+. +.+.+|++.+|+. ..|.+ |...|.+++|||||+.||+++.+. ..+ .++.+
T Consensus 14 ~~~~~~~~~S~~~iaf~~~-~~l~~~~~~gg~~-~~lt~-~~~~v~~~~~SPDG~~la~~s~~~~~~~~------~~i~~ 84 (1045)
T 1k32_A 14 PNLLLNPDIHGDRIIFVCC-DDLWEHDLKSGST-RKIVS-NLGVINNARFFPDGRKIAIRVMRGSSLNT------ADLYF 84 (1045)
T ss_dssp CCCCEEEEEETTEEEEEET-TEEEEEETTTCCE-EEEEC-SSSEEEEEEECTTSSEEEEEEEESTTCCE------EEEEE
T ss_pred cceEeCcEEeCCEEEEEEC-CcEEEEECCCCcE-EEeee-CCCcccCeEECCCCCEEEEEEeeccCCCC------CeEEE
Confidence 4567888899888888876 7999999987764 45766 778899999999999999988652 122 48899
Q ss_pred eEeccCCcCcccceeeeccccCc-------eEEEEeCCCCeEEEEeeCC------CcEEEeecCCCeEEEE---------
Q 011452 173 EYIRRGKPDAGFALFESESLKWP-------GFVEFDDVNGKVLTYSAQD------SIYKVFDLKNYTMLYS--------- 230 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~~~~~~~-------~~V~Fs~pnG~~Las~s~D------~tiKlWdl~~g~~l~t--------- 230 (485)
|++..|++ ..|..+ ...+ ..++|+ |||+++++++.| ..+.+||+.++++...
T Consensus 85 ~d~~~g~~---~~lt~~--~~~~~~~~~~~~~~~~S-pDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~ 158 (1045)
T 1k32_A 85 YNGENGEI---KRITYF--SGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHIL 158 (1045)
T ss_dssp EETTTTEE---EECCCC--CEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEE
T ss_pred EECCCCCe---EEcccC--CCcccccccccccccCC-CCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceee
Confidence 99877764 122222 2223 689998 799988877755 4577788877663210
Q ss_pred ----------------------------------------E--cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-C
Q 011452 231 ----------------------------------------I--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-G 267 (485)
Q Consensus 231 ----------------------------------------l--~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G 267 (485)
+ +...|..++|+|+ .++.+++ .|++++||.+.. |
T Consensus 159 ~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~--~dg~~~l~~~~~~g 235 (1045)
T 1k32_A 159 FADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITD--IDGFGQIYSTDLDG 235 (1045)
T ss_dssp EETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEEC--TTSSCEEEEEETTS
T ss_pred eCCCEEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEe--ccCceEEEEEeCCC
Confidence 0 1124555666666 3333322 335666775432 2
Q ss_pred eEEEEe---------------------------------------ec-----------CCcceeEEEEEecCCCEEEEEe
Q 011452 268 TVLKSF---------------------------------------NH-----------LLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 268 ~~L~tl---------------------------------------~~-----------~~~~~~~V~f~~~~~~~lls~s 297 (485)
..++.+ .+ |...+..++|++|++..|++++
T Consensus 236 ~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~ 315 (1045)
T 1k32_A 236 KDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS 315 (1045)
T ss_dssp CSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE
T ss_pred CcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE
Confidence 222222 22 1124567788635677777766
Q ss_pred CCCcEEEEECCCCeeEEecccCCC-ceEEEEEcCCCcEEEEEe-CCcEE-EEeCCCcEEEEeecCCCCCCCCCeeEEEEC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYENQLFLTFR-NRTVA-VWNFRGELVTSFEDHLLWHPDCNTNNIYIT 374 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~-~v~avaFspdg~llaS~s-D~TIk-lWd~~G~ll~tl~gH~~~~~~~~v~svafS 374 (485)
+++|.+||+.+++... +..|.. .+..++|+ ||+.|++++ +..|. +||+.+..+..+.+|... +..++||
T Consensus 316 -~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~-----~~~~~~S 387 (1045)
T 1k32_A 316 -RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN-----VFAMGVD 387 (1045)
T ss_dssp -TTEEEEECTTSSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS-----EEEEEEC
T ss_pred -cCEEEEEcCCCCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc-----eeeeEEC
Confidence 7889999999887665 556777 89999999 999999999 77888 889975545566677655 8999999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhc
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAE 454 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (485)
|||++||+++. +++|++||+.+|++...+.+|..
T Consensus 388 pDG~~la~~~~-----------~~~v~~~d~~tg~~~~~~~~~~~----------------------------------- 421 (1045)
T 1k32_A 388 RNGKFAVVAND-----------RFEIMTVDLETGKPTVIERSREA----------------------------------- 421 (1045)
T ss_dssp TTSSEEEEEET-----------TSEEEEEETTTCCEEEEEECSSS-----------------------------------
T ss_pred CCCCEEEEECC-----------CCeEEEEECCCCceEEeccCCCC-----------------------------------
Confidence 99999999886 68999999999999988878863
Q ss_pred ccCCeEEEEEcCCCCEEEEecCCC----------cEEEccC
Q 011452 455 ALEDITALFYDEDRNEIYTGNRHG----------LVHVWSN 485 (485)
Q Consensus 455 ~l~~V~sl~fspDg~~LaSgs~Dg----------tVklWd~ 485 (485)
.|.+++|||||+.||+++.++ +|++||.
T Consensus 422 ---~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 422 ---MITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp ---CCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred ---CccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 778899999999999988755 9999984
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=226.15 Aligned_cols=281 Identities=13% Similarity=0.126 Sum_probs=206.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc-Ccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP-DAG 183 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~~~ 183 (485)
+..+++.+.++++++||.++|+.+..+.. +...+ +++|+|||+.|++++. .+ .++.+|++.+|++ ..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~s~dg~~l~~~~~--~~-------~~i~~~d~~~~~~~~~- 77 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQITL-GYDFV-DTAITSDCSNVVVTSD--FC-------QTLVQIETQLEPPKVV- 77 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEEEEC-CCCEE-EEEECSSSCEEEEEES--TT-------CEEEEEECSSSSCEEE-
T ss_pred CEEEEEecCCCeEEEEeCcccceeeeEEc-cCCcc-eEEEcCCCCEEEEEeC--CC-------CeEEEEECCCCceeEE-
Confidence 55688889999999999999999988876 44456 9999999998877663 23 4899999988875 21
Q ss_pred cceeeeccccCceE-EEEeCCCCeEEEEeeCCC---cEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEEcCCCCe
Q 011452 184 FALFESESLKWPGF-VEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM-LLIFTKASGHV 257 (485)
Q Consensus 184 ~~lf~~~~~~~~~~-V~Fs~pnG~~Las~s~D~---tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~-ll~sss~~~D~ 257 (485)
.+.. ...+.. ++|+ |||++|+.+..++ +|++||+++++.+.++. +....+++|+|++. ++++... +.
T Consensus 78 --~~~~--~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~ 150 (331)
T 3u4y_A 78 --AIQE--GQSSMADVDIT-PDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRS--SA 150 (331)
T ss_dssp --EEEE--CSSCCCCEEEC-TTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEET--TT
T ss_pred --eccc--CCCCccceEEC-CCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecC--CC
Confidence 2222 234556 9998 7999988555442 99999999999988886 45789999999765 5555443 24
Q ss_pred e-EEEEecCCCeEE-----EEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCee---EEecccCCCceEEEE
Q 011452 258 P-LKILSIEDGTVL-----KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL---TEVSRTEFMTPSAFI 327 (485)
Q Consensus 258 t-IklWdi~tG~~L-----~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~---~~~l~gh~~~v~ava 327 (485)
. |++|++.....+ +.+. .......++|+ |++.++++++ .+++|++||+.+++. +..+..+ ..+..++
T Consensus 151 ~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~ 227 (331)
T 3u4y_A 151 NTVRRFKIDADGVLFDTGQEFIS-GGTRPFNITFT-PDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIV 227 (331)
T ss_dssp TEEEEEEECTTCCEEEEEEEEEC-SSSSEEEEEEC-TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEE
T ss_pred ceEEEEEECCCCcEeecCCcccc-CCCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEE
Confidence 6 999998764443 2222 22456788986 7787777764 799999999999998 7777644 5788999
Q ss_pred EcCCCcEEE-EEe-CCcEEEEeCC-CcE--EEEeecCCCCCC--CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 328 FLYENQLFL-TFR-NRTVAVWNFR-GEL--VTSFEDHLLWHP--DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 328 Fspdg~lla-S~s-D~TIklWd~~-G~l--l~tl~gH~~~~~--~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
|+|||++|+ +.. +++|.+||.+ |++ +.++..+...++ ...++.++|+|||++|+.++.+ +++|
T Consensus 228 ~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~----------~~~v 297 (331)
T 3u4y_A 228 VSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANI----------SREL 297 (331)
T ss_dssp ECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETT----------TTEE
T ss_pred ECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCC----------CCcE
Confidence 999999655 444 8899999996 887 666665522111 1113569999999999777652 6899
Q ss_pred EEEeCCCCeEEEEecCCC
Q 011452 401 NISNILTGKCLAKIRASN 418 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~ 418 (485)
++||+.+ +.+..+.+..
T Consensus 298 ~v~d~~~-~~~~~~~~~~ 314 (331)
T 3u4y_A 298 KVFTISG-KVVGYVAGIE 314 (331)
T ss_dssp EEEETTS-CEEEECTTCC
T ss_pred EEEEecC-Ccccceeccc
Confidence 9999975 4445555543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=263.68 Aligned_cols=281 Identities=12% Similarity=0.121 Sum_probs=213.9
Q ss_pred cccEEEEEEeeCCCEEEEEEe-ecCCCCcccceeEEEEeEeccCCcCcccceeeeccc----------------------
Q 011452 136 DEVIRSLFYNKNNDSLITVSV-YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL---------------------- 192 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~-d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~---------------------- 192 (485)
...|.+++|||||+.|++++. ++... ..++.+|++.+|+.. .++.....
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~-----~~~i~~~d~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRN-----QLDLWSYDIGSGQTR---LLVDSKVVLPGTETLSDEEKARRERQRIAA 107 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTT-----EEEEEEEETTTCCEE---EEECGGGTC--------------------C
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCc-----ccEEEEEECCCCcee---Eccchhhcccccccccchhhhhhhhhhhcc
Confidence 346999999999999999885 32111 248999999888762 23332111
Q ss_pred -cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC---eEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 193 -KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 193 -~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g---~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
..+..++|| |||+.|++++. ++|++||+.++ +. ..+. ...+..++|||++..+++.+. .+|++||+.+
T Consensus 108 ~~~v~~~~~S-pDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~~~~~~~~~~SPDG~~la~~~~---~~i~~~d~~~ 181 (741)
T 2ecf_A 108 MTGIVDYQWS-PDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHGEGFATDAKLSPKGGFVSFIRG---RNLWVIDLAS 181 (741)
T ss_dssp CEESCCCEEC-TTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCSSSCEEEEEECTTSSEEEEEET---TEEEEEETTT
T ss_pred ccCcceeEEC-CCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccCCcccccccCCCCCCEEEEEeC---CcEEEEecCC
Confidence 124578998 89999999986 99999999988 43 3333 467999999998876666553 4899999999
Q ss_pred CeEEEEeecCCcc----------------eeEEEEEecCCCEEEEEeCCC------------------------------
Q 011452 267 GTVLKSFNHLLHR----------------NKKVDFIEQFNEKLLVKQENE------------------------------ 300 (485)
Q Consensus 267 G~~L~tl~~~~~~----------------~~~V~f~~~~~~~lls~s~D~------------------------------ 300 (485)
|++.+....+... +..++|+ ||+.+|++++.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S-pDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA-PDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC-TTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEEC-CCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 9887765543322 3679996 7899999987665
Q ss_pred ---cEEEEECCC-CeeEEecc--cCCCceEEEEEcCCCcEEEEEe------CCcEEEEeCC-CcEEEEeecCCC-CCCCC
Q 011452 301 ---NLQILDVRN-FELTEVSR--TEFMTPSAFIFLYENQLFLTFR------NRTVAVWNFR-GELVTSFEDHLL-WHPDC 366 (485)
Q Consensus 301 ---tIkIWDv~t-g~~~~~l~--gh~~~v~avaFspdg~llaS~s------D~TIklWd~~-G~ll~tl~gH~~-~~~~~ 366 (485)
+|.+||+.+ +++..... +|...+.+++| |||+.|+.++ +.+|.+||++ |++...+..|.. |..
T Consensus 261 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-- 337 (741)
T 2ecf_A 261 VQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP-- 337 (741)
T ss_dssp CEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC--
T ss_pred CeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC--
Confidence 899999999 98876654 47889999999 9999998664 3589999996 898888877653 311
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL-TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
.+.+++|||||++|++++. ||+++||.+. +|+ +..|.+|..
T Consensus 338 ~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~~~~~~-~~~l~~~~~-------------------------- 379 (741)
T 2ecf_A 338 LHNSLRFLDDGSILWSSER-----------TGFQHLYRIDSKGK-AAALTHGNW-------------------------- 379 (741)
T ss_dssp CCSCCEECTTSCEEEEECT-----------TSSCEEEEECSSSC-EEESCCSSS--------------------------
T ss_pred cCCceEECCCCeEEEEecC-----------CCccEEEEEcCCCC-eeeeeecce--------------------------
Confidence 1468999999999888765 6888888775 567 888888752
Q ss_pred cccccchhcccCCeEEE-EEcCCCCEEE-EecCCC--cEEEcc
Q 011452 446 SRIRSTVAEALEDITAL-FYDEDRNEIY-TGNRHG--LVHVWS 484 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl-~fspDg~~La-Sgs~Dg--tVklWd 484 (485)
.|.++ +|||||+.|+ +++.|+ +++||+
T Consensus 380 ------------~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 380 ------------SVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp ------------CEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred ------------EEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 67777 5999999775 566666 999996
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-27 Score=225.21 Aligned_cols=278 Identities=8% Similarity=0.065 Sum_probs=195.4
Q ss_pred EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEe-eCCCcEEEe
Q 011452 142 LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS-AQDSIYKVF 220 (485)
Q Consensus 142 v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~-s~D~tiKlW 220 (485)
..|+++++.+..+. . .+ +++.+||+.+|++.. .+.. ....+ .++|+ |||+.|..+ ..|++|.+|
T Consensus 3 ~~~~~~~~~~~v~~--~-~~------~~v~~~d~~~~~~~~---~~~~-~~~~~-~~~~s-~dg~~l~~~~~~~~~i~~~ 67 (331)
T 3u4y_A 3 AMFQTTSNFGIVVE--Q-HL------RRISFFSTDTLEILN---QITL-GYDFV-DTAIT-SDCSNVVVTSDFCQTLVQI 67 (331)
T ss_dssp ----CCCCEEEEEE--G-GG------TEEEEEETTTCCEEE---EEEC-CCCEE-EEEEC-SSSCEEEEEESTTCEEEEE
T ss_pred eeEcCCCCEEEEEe--c-CC------CeEEEEeCcccceee---eEEc-cCCcc-eEEEc-CCCCEEEEEeCCCCeEEEE
Confidence 35667766655433 2 23 599999999898732 2322 23445 89998 799855544 458999999
Q ss_pred ecCCCeE-EEEEc-CCcEEE-EEEcCCceEEEEEcCCCCe--eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEE
Q 011452 221 DLKNYTM-LYSIS-DKNVQE-IKISPGIMLLIFTKASGHV--PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV 295 (485)
Q Consensus 221 dl~~g~~-l~tl~-~~~V~~-VafSpg~~ll~sss~~~D~--tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls 295 (485)
|+++++. ...+. +..... ++|||++..++. ....+. +|++||+++|+++.++..+ .....++|+ |++.++++
T Consensus 68 d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s-pdg~~l~~ 144 (331)
T 3u4y_A 68 ETQLEPPKVVAIQEGQSSMADVDITPDDQFAVT-VTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS-PNGNGLIL 144 (331)
T ss_dssp ECSSSSCEEEEEEECSSCCCCEEECTTSSEEEE-CCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC-TTSSCEEE
T ss_pred ECCCCceeEEecccCCCCccceEECCCCCEEEE-ecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC-CCCCEEEE
Confidence 9999987 66654 334444 999997766554 332223 9999999999999998754 445789996 77777777
Q ss_pred E-eCCCc-EEEEECCCCeeE-----EecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-CcE---EEEeecCCCC
Q 011452 296 K-QENEN-LQILDVRNFELT-----EVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GEL---VTSFEDHLLW 362 (485)
Q Consensus 296 ~-s~D~t-IkIWDv~tg~~~-----~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G~l---l~tl~gH~~~ 362 (485)
+ ..+++ |++|++.....+ +.+ .+...+..++|+|||+ ++++.. +++|.+||++ |++ +.++..+. .
T Consensus 145 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~ 222 (331)
T 3u4y_A 145 IDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNN-L 222 (331)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSS-C
T ss_pred EecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCC-C
Confidence 6 56688 999998864332 222 3345689999999998 455666 9999999996 888 88888653 2
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--EEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
+..++|+|||++|+.++. .+++|.+||+.+|+. +.++..+-..
T Consensus 223 -----~~~~~~spdg~~l~v~~~----------~~~~i~~~d~~~~~~~~~~~~~~~~~~-------------------- 267 (331)
T 3u4y_A 223 -----PGTIVVSRDGSTVYVLTE----------STVDVFNFNQLSGTLSFVKSFGHGLLI-------------------- 267 (331)
T ss_dssp -----CCCEEECTTSSEEEEECS----------SEEEEEEEETTTTEEEEEEEEECCCCC--------------------
T ss_pred -----CceEEECCCCCEEEEEEc----------CCCEEEEEECCCCceeeeccccccccc--------------------
Confidence 678999999998776653 268899999999998 6666554100
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCCEEEEec-CCCcEEEccC
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RHGLVHVWSN 485 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~DgtVklWd~ 485 (485)
+ . .....+.+++|+|||+.|+.++ .+++|+|||+
T Consensus 268 -~---~-------~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~ 302 (331)
T 3u4y_A 268 -D---P-------RPLFGANQMALNKTETKLFISANISRELKVFTI 302 (331)
T ss_dssp -C---C-------GGGTTCCCEEECTTSSEEEEEETTTTEEEEEET
T ss_pred -C---C-------CCcccccceEECCCCCEEEEecCCCCcEEEEEe
Confidence 0 0 0001335689999999986554 5679999984
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=261.33 Aligned_cols=273 Identities=9% Similarity=-0.056 Sum_probs=201.4
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK 206 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~ 206 (485)
+++.+...+...|++|+|+|||++||++|.. + ++++||.+..|++ .++... +...+..++|+ || +
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~DG~~la~~s~~---~------g~~~lw~~~~g~~---~~lt~~-~~~~~~~~~~s-pd-~ 76 (582)
T 3o4h_A 12 IVRDVERLIAVEKYSLQGVVDGDKLLVVGFS---E------GSVNAYLYDGGET---VKLNRE-PINSVLDPHYG-VG-R 76 (582)
T ss_dssp HHHHHHHHHHSCEEEEEEEETTTEEEEEEEE---T------TEEEEEEEETTEE---EECCSS-CCSEECEECTT-CS-E
T ss_pred HHHHHHHHhccchheeecCCCCCeEEEEEcc---C------CceeEEEEcCCCc---Eeeecc-cccccccccCC-CC-e
Confidence 3334443345579999999999999998852 3 4899999866654 122222 22345688998 78 8
Q ss_pred EEEEeeC---CCcEEEeecCC---CeEEEEEc-CCcEEEEEEcCCc--eEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 207 VLTYSAQ---DSIYKVFDLKN---YTMLYSIS-DKNVQEIKISPGI--MLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 207 ~Las~s~---D~tiKlWdl~~---g~~l~tl~-~~~V~~VafSpg~--~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+|++++. +..++||.+.. +... .+. ...+...+|||++ .++++.+ .+.+ .|||+++|++.....++.
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~--~~~~-~l~d~~~g~~~~l~~~~~ 152 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGAT--EDRV-ALYALDGGGLRELARLPG 152 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCE-ECTTSCSBEEEEEEECSSCEEEEEEC--SSCE-EEEEEETTEEEEEEEESS
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccc-cccCCCCceeeeeCCCCCeEEEEecC--CCCc-eEEEccCCcEEEeecCCC
Confidence 8887765 66778876543 3333 342 3344456777543 4555433 3344 499999998776665432
Q ss_pred cceeEEEEEecCCCEEEEEeCC----CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC--cEEEEeCC-
Q 011452 278 HRNKKVDFIEQFNEKLLVKQEN----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR--TVAVWNFR- 349 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D----~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~--TIklWd~~- 349 (485)
.+++|+ |||.+|++++.| .+|.+||+.++++. .+.+|...+..++|||||++|+++. |+ +|.+||++
T Consensus 153 ---~~~~~s-pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~ 227 (582)
T 3o4h_A 153 ---FGFVSD-IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD 227 (582)
T ss_dssp ---CEEEEE-EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT
T ss_pred ---ceEEEC-CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC
Confidence 789997 789899887766 78999999999876 5678888999999999999999777 88 99999997
Q ss_pred CcEEEEeecCCCCCCCCCeeEEE--------ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 350 GELVTSFEDHLLWHPDCNTNNIY--------ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 350 G~ll~tl~gH~~~~~~~~v~sva--------fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
|++. .+++|... +.+++ |||||+++++++. |++++||++ |+++.++ .
T Consensus 228 ~~~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg~~~~~~~~-----------~g~~~l~~~--g~~~~~~---~--- 282 (582)
T 3o4h_A 228 GSVE-DLELPSKD-----FSSYRPTAITWLGYLPDGRLAVVARR-----------EGRSAVFID--GERVEAP---Q--- 282 (582)
T ss_dssp CCEE-ECCCSCSH-----HHHHCCSEEEEEEECTTSCEEEEEEE-----------TTEEEEEET--TEEECCC---S---
T ss_pred CcEE-EccCCCcC-----hhhhhhccccceeEcCCCcEEEEEEc-----------CCcEEEEEE--CCeeccC---C---
Confidence 7777 88888765 66777 9999999999987 799999999 8876522 2
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCc---EEEcc
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGL---VHVWS 484 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dgt---VklWd 484 (485)
..|.+++|+ ||+.+++++.+.+ |.+|+
T Consensus 283 -----------------------------------~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 283 -----------------------------------GNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp -----------------------------------SEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred -----------------------------------CceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence 178899999 9999999998865 55554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=266.50 Aligned_cols=278 Identities=13% Similarity=0.099 Sum_probs=202.0
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc--cCceEEEEeCCCCeEEEEeeCC-
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL--KWPGFVEFDDVNGKVLTYSAQD- 214 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~pnG~~Las~s~D- 214 (485)
.+.+++|||||++|++ + .| +++++|++.+|+.. .++..... ..+..++|| |||+.||+++.|
T Consensus 18 ~~~~~~~spdg~~~~~-~----~d------g~i~~~d~~~g~~~---~~~~~~~~~~~~v~~~~~S-pDg~~l~~~~~~~ 82 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QK------GTVRLWNVETNTST---VLIEGKKIESLRAIRYEIS-PDREYALFSYNVE 82 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SS------SCEEEBCGGGCCCE---EEECTTTTTTTTCSEEEEC-TTSSEEEEEESCC
T ss_pred cccccEEcCCCcEEEE-e----CC------CCEEEEECCCCcEE---EEeccccccccccceEEEC-CCCCEEEEEecCc
Confidence 4788999999996654 3 23 48999999999872 34443211 136789998 899999999875
Q ss_pred --------CcEEEeecCCCeEEEEEc---C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcce-
Q 011452 215 --------SIYKVFDLKNYTMLYSIS---D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN- 280 (485)
Q Consensus 215 --------~tiKlWdl~~g~~l~tl~---~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~- 280 (485)
++|.|||++++++ ..+. + ..|..++|||++..+++.+. .+|++||+.+|++.+....+...+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~---~~i~~~~~~~g~~~~~~~~~~~~~~ 158 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE---NNIYYCAHVGKQAIRVVSTGKEGVI 158 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET---TEEEEESSSSSCCEEEECCCBTTTE
T ss_pred cceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC---CeEEEEECCCCceEEEecCCCCCce
Confidence 7788999999886 3332 1 24889999997766666553 589999999999887766533322
Q ss_pred -----------------eEEEEEecCCCEEEEEeCCC----------------------------------cEEEEECCC
Q 011452 281 -----------------KKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRN 309 (485)
Q Consensus 281 -----------------~~V~f~~~~~~~lls~s~D~----------------------------------tIkIWDv~t 309 (485)
..++|+ ||+.+|++++.|+ +|++||+.+
T Consensus 159 ~~g~~~~v~~ee~~~~~~~~~~S-pDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~ 237 (723)
T 1xfd_A 159 YNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNG 237 (723)
T ss_dssp EEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSS
T ss_pred ECcccceeEEEEeccCcceEEEC-CCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCC
Confidence 689996 7899999887543 899999999
Q ss_pred CeeEEecccC------CCceEEEEEcCCCcEEEEEe-C----CcEEEEeCC-CcEEEEeec-CCCCCCCCCeeEEEECCC
Q 011452 310 FELTEVSRTE------FMTPSAFIFLYENQLFLTFR-N----RTVAVWNFR-GELVTSFED-HLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 310 g~~~~~l~gh------~~~v~avaFspdg~llaS~s-D----~TIklWd~~-G~ll~tl~g-H~~~~~~~~v~svafSpD 376 (485)
+++...+..| ...+.+++|||||++|++.+ . .+|.+||+. |++...+.. |..|.... ...++||||
T Consensus 238 ~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~-~~~~~~spd 316 (723)
T 1xfd_A 238 PTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQ-NEEPVFSKD 316 (723)
T ss_dssp SCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCC-CCCCEECTT
T ss_pred CceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEecc-CCCceEcCC
Confidence 9876666554 67899999999999998775 2 589999996 888877754 44451100 027899999
Q ss_pred CCEEEEE-ecCCCCCCCCcCCCC------eEEEEe-CCCCe--EEEEecCCCCCCCCcccccCCCCCCCCcccccccccc
Q 011452 377 QDLIISY-CKADSDDPLAEGNAG------SINISN-ILTGK--CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHAS 446 (485)
Q Consensus 377 G~~LaS~-s~d~~~d~~~~~~Dg------tIklWd-l~TGk--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (485)
|++|+.. +. .|+ .|.+|| ..+++ |+..|..+.
T Consensus 317 g~~l~~~~~~----------~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~---------------------------- 358 (723)
T 1xfd_A 317 GRKFFFIRAI----------PQGGRGKFYHITVSSSQPNSSNDNIQSITSGD---------------------------- 358 (723)
T ss_dssp SCSEEEEEEE----------CCSSSSCEEEEEEECSSCCSSSCCCCBSCCSS----------------------------
T ss_pred CCeEEEEEec----------ccCCCcceeEEEEEeccCCCCccceeEeecCC----------------------------
Confidence 9988865 33 145 577777 34444 255565432
Q ss_pred ccccchhcccCCeEE-EEEcCCCCEEEEecCC---CcEEEcc
Q 011452 447 RIRSTVAEALEDITA-LFYDEDRNEIYTGNRH---GLVHVWS 484 (485)
Q Consensus 447 ~~~~~~~~~l~~V~s-l~fspDg~~LaSgs~D---gtVklWd 484 (485)
..|.. ++|||||+.||..+.+ ++++||+
T Consensus 359 ----------~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 359 ----------WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp ----------SCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred ----------eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence 14444 7999999999766544 8999996
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-26 Score=221.37 Aligned_cols=277 Identities=9% Similarity=0.063 Sum_probs=191.9
Q ss_pred CEEEEE-eCCCeEEeeecc-cCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCC
Q 011452 106 DIVFAL-AQSGVCAAFCRE-TNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGK 179 (485)
Q Consensus 106 ~~ias~-s~dgtiklW~~~-tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~ 179 (485)
++|+++ +.|+++++|++. +|+ .+.++. +...+.+++|+|+|+.|++++. ++ ..+.+|++. .|+
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~---~~------~~v~~~~~~~~~~~ 73 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHEGALTLTQVVD--VPGQVQPMVVSPDKRYLYVGVR---PE------FRVLAYRIAPDDGA 73 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSCCCCEEECTTSSEEEEEET---TT------TEEEEEEECTTTCC
T ss_pred EEEEEeCCCCCeEEEEEECCCCcEEEeeeEe--cCCCCceEEECCCCCEEEEeec---CC------CeEEEEEecCCCCc
Confidence 444444 889999999985 453 344432 5567899999999999988763 22 489999986 566
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeEEEEee-CCCcEEEeecC---CCeEEEEEcC-CcEEEEEEcCCce-EEEEEcC
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK---NYTMLYSISD-KNVQEIKISPGIM-LLIFTKA 253 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~---~g~~l~tl~~-~~V~~VafSpg~~-ll~sss~ 253 (485)
+.. +........+..++|+ |+|+.|+.++ .|++|++||+. +++.+..+.. ..+.+++|+|++. +++++.
T Consensus 74 ~~~---~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~- 148 (343)
T 1ri6_A 74 LTF---AAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL- 148 (343)
T ss_dssp EEE---EEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-
T ss_pred eee---ccccccCCCCcEEEEc-CCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecC-
Confidence 421 1111112357789998 7999775554 58999999994 4455666653 4689999999665 554432
Q ss_pred CCCeeEEEEecCC-CeEEE----EeecC-CcceeEEEEEecCCCEEEEEe-CCCcEEEEECC--CCee--EEec---c-c
Q 011452 254 SGHVPLKILSIED-GTVLK----SFNHL-LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--NFEL--TEVS---R-T 318 (485)
Q Consensus 254 ~~D~tIklWdi~t-G~~L~----tl~~~-~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~--tg~~--~~~l---~-g 318 (485)
.+.+|++||+.+ |+... .+..+ ......++|+ |++..+++++ .+++|++||+. +++. .+.. . +
T Consensus 149 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~ 226 (343)
T 1ri6_A 149 -KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPEN 226 (343)
T ss_dssp -GGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred -CCCEEEEEEecCCCceeeecccccccCCCCCcceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcc
Confidence 347999999998 86643 23322 2356688986 7788787765 89999999995 4543 2222 1 1
Q ss_pred C--CCceEEEEEcCCCcEEE-EEe-CCcEEEEeCC--C---cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCC
Q 011452 319 E--FMTPSAFIFLYENQLFL-TFR-NRTVAVWNFR--G---ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSD 389 (485)
Q Consensus 319 h--~~~v~avaFspdg~lla-S~s-D~TIklWd~~--G---~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~ 389 (485)
| ...+..++|+|||+.|+ +.+ |++|++||++ + +.+..+..+.. +..++|+|||++|+.++.
T Consensus 227 ~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~~~---- 296 (343)
T 1ri6_A 227 FSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ------PRGFNVDHSGKYLIAAGQ---- 296 (343)
T ss_dssp CCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS------CCCEEECTTSSEEEEECT----
T ss_pred ccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc------cceEEECCCCCEEEEecC----
Confidence 1 34677899999998666 665 9999999996 3 34555655432 678999999999998874
Q ss_pred CCCCcCCCCeEEEE--eCCCCe--EEEEecC
Q 011452 390 DPLAEGNAGSINIS--NILTGK--CLAKIRA 416 (485)
Q Consensus 390 d~~~~~~DgtIklW--dl~TGk--~l~tl~g 416 (485)
.+++|.+| |..+|+ .+..+..
T Consensus 297 ------~~~~v~v~~~d~~~g~~~~~~~~~~ 321 (343)
T 1ri6_A 297 ------KSHHISVYEIVGEQGLLHEKGRYAV 321 (343)
T ss_dssp ------TTCEEEEEEEETTTTEEEEEEEEEC
T ss_pred ------CCCeEEEEEEcCCCceeeEcccccc
Confidence 27999999 555775 3445543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=262.34 Aligned_cols=318 Identities=11% Similarity=0.036 Sum_probs=218.0
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcc---cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADE---VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~---~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
++++++ +.|+++++|+..+|++...+.+ +.. .|.+++|||||+.||+++..... +.+-.-.++.+|++.+|++.
T Consensus 27 g~~~~~-~~d~~i~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~SpDg~~la~~~~~~~~-~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 27 QEYLHQ-SADNNIVLYNIETGQSYTILSN-RTMKSVNASNYGLSPDRQFVYLESDYSKL-WRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp SEEEEE-CTTSCEEEEESSSCCEEEEECH-HHHHTTTCSEEEECTTSSEEEEEEEEEEC-SSSCEEEEEEEEETTTTEEC
T ss_pred CeEEEE-cCCCCEEEEEcCCCcEEEEEcc-ccccccceeeEEECCCCCeEEEEecCcee-EEeecceEEEEEECCCCccc
Confidence 655554 5699999999999998876654 433 38999999999999998753210 00001168999999888752
Q ss_pred cccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-C--CcE-----------------EEEEE
Q 011452 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-D--KNV-----------------QEIKI 241 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~--~~V-----------------~~Vaf 241 (485)
...++ . ..+..++|| |||+.||+++ |++|++||+.++++..... + ..| .+++|
T Consensus 104 ~~~~l-~----~~~~~~~~S-PDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~w 176 (719)
T 1z68_A 104 RGNEL-P----RPIQYLCWS-PVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWW 176 (719)
T ss_dssp CSSCC-C----SSBCCEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEE
T ss_pred cceec-C----cccccceEC-CCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEE
Confidence 11111 1 245689998 8999999986 8899999999988654322 2 123 48999
Q ss_pred cCCceEEEEEcCCC--------------------------------CeeEEEEecCCCeEE--------EEeecCCccee
Q 011452 242 SPGIMLLIFTKASG--------------------------------HVPLKILSIEDGTVL--------KSFNHLLHRNK 281 (485)
Q Consensus 242 Spg~~ll~sss~~~--------------------------------D~tIklWdi~tG~~L--------~tl~~~~~~~~ 281 (485)
||++..+++++.+. ..+|++||+.+|+++ ..+.+|.+.+.
T Consensus 177 SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (719)
T 1z68_A 177 SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFS 256 (719)
T ss_dssp CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEE
T ss_pred CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEE
Confidence 99776666654321 238999999998863 22446777888
Q ss_pred EEEEEecCCCEEEEE-e--CC--CcEEEEE----CCCCeeEEec----ccCCCceE-----EEEEcCCCcEEEE--Ee-C
Q 011452 282 KVDFIEQFNEKLLVK-Q--EN--ENLQILD----VRNFELTEVS----RTEFMTPS-----AFIFLYENQLFLT--FR-N 340 (485)
Q Consensus 282 ~V~f~~~~~~~lls~-s--~D--~tIkIWD----v~tg~~~~~l----~gh~~~v~-----avaFspdg~llaS--~s-D 340 (485)
.++|+ || +++++. . .+ ..|.+|| +.++++..++ .+|..++. .++|+|||+.|+. +. +
T Consensus 257 ~~~~S-pD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 334 (719)
T 1z68_A 257 WLTWV-TD-ERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKD 334 (719)
T ss_dssp EEEES-SS-SEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTT
T ss_pred EeEEe-CC-CeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccC
Confidence 99997 66 456554 2 22 3488899 9999988877 57888777 8899999996543 43 5
Q ss_pred C--cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC--Ce-EEEEec
Q 011452 341 R--TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT--GK-CLAKIR 415 (485)
Q Consensus 341 ~--TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T--Gk-~l~tl~ 415 (485)
+ .|.+||+.+.....|..+... |..+.++ ||+.|+..+.+. +..+++++||.+.. |+ ....|.
T Consensus 335 g~~~l~~~~~~~~~~~~lt~~~~~-----v~~~~~~-d~~~i~~~~~~~------~~~~~~~~l~~~~~~~g~~~~~~l~ 402 (719)
T 1z68_A 335 GYKHIHYIKDTVENAIQITSGKWE-----AINIFRV-TQDSLFYSSNEF------EEYPGRRNIYRISIGSYPPSKKCVT 402 (719)
T ss_dssp SCEEEEEESSCSTTCEECSCSSSC-----EEEEEEE-CSSEEEEEESCG------GGCTTCBEEEEEECSSSSCCEEESS
T ss_pred CceEEEEEECCCCceEecccCceE-----EEEEEEE-eCCEEEEEEecC------CCCCceEEEEEEeCCCCCCCceecc
Confidence 5 677778874436677765433 7888888 888888776400 01148899998754 42 123332
Q ss_pred C----CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE-EecCC--CcEEEcc
Q 011452 416 A----SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY-TGNRH--GLVHVWS 484 (485)
Q Consensus 416 g----H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La-Sgs~D--gtVklWd 484 (485)
. |. ..+..+.|||||+.|+ +++.+ .++.+||
T Consensus 403 ~~~~~~~--------------------------------------~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d 440 (719)
T 1z68_A 403 CHLRKER--------------------------------------CQYYTASFSDYAKYYALVCYGPGIPISTLHD 440 (719)
T ss_dssp TTTTTTT--------------------------------------BCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred CccCCCC--------------------------------------CceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence 2 32 2678899999999877 44444 4677776
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.7e-27 Score=217.72 Aligned_cols=257 Identities=11% Similarity=0.039 Sum_probs=190.8
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeEEEEEcC---CcEEEEEEcC
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSISD---KNVQEIKISP 243 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~l~tl~~---~~V~~VafSp 243 (485)
.++.+|++..|+.. .++.+ ...+..++|+ |||++|++++ |+.|++||+.+ ++....... ..|.+++|||
T Consensus 22 ~~i~~~d~~~~~~~---~~~~~--~~~v~~~~~s-pdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp 94 (297)
T 2ojh_A 22 SSIEIFNIRTRKMR---VVWQT--PELFEAPNWS-PDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISP 94 (297)
T ss_dssp EEEEEEETTTTEEE---EEEEE--SSCCEEEEEC-TTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECT
T ss_pred eeEEEEeCCCCcee---eeccC--CcceEeeEEC-CCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECC
Confidence 69999999888762 24443 4567799998 8999999987 88999999999 887655532 4688999999
Q ss_pred CceEEEEEcCCCCeeEEE--EecCCCeEEEEeecCCcceeEEEEEecCCCEEE-EEeCCCcEEEEEC--CCCeeEEeccc
Q 011452 244 GIMLLIFTKASGHVPLKI--LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL-VKQENENLQILDV--RNFELTEVSRT 318 (485)
Q Consensus 244 g~~ll~sss~~~D~tIkl--Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll-s~s~D~tIkIWDv--~tg~~~~~l~g 318 (485)
++.++++...+.+..++| |++.+++ .+.+..+ ..+..++|+ |++..|+ +++.|++++||++ .+++. ..+..
T Consensus 95 dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~s-pdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 170 (297)
T 2ojh_A 95 DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWS-PDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLTH 170 (297)
T ss_dssp TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEEC-TTSSEEEEEEEETTEEEEEEEETTTCCE-EECCC
T ss_pred CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEEC-CCCCEEEEEECCCCceEEEEEECCCCcc-eEccc
Confidence 777666666333344455 4556665 5556544 347788886 7788888 4679999999995 44554 55667
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CCcEEEEeC--CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 319 EFMTPSAFIFLYENQLFLTFR--NRTVAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s--D~TIklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
|...+..++|+|||+.|+.++ |++++||++ .++.+..+..|... +..++|+|||++|+.++.+........
T Consensus 171 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~~~~~~~~~~~~~~ 245 (297)
T 2ojh_A 171 GEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYG-----DWFPHPSPSGDKVVFVSYDADVFDHPR 245 (297)
T ss_dssp SSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEE-----EEEEEECTTSSEEEEEEEETTCCSCCS
T ss_pred CCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcc-----cCCeEECCCCCEEEEEEcCCCCCcccc
Confidence 888999999999999877554 899999998 47788889888755 899999999999999886210000000
Q ss_pred CCCCeEEEEeCCCCeE--EEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE
Q 011452 395 GNAGSINISNILTGKC--LAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY 472 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~--l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La 472 (485)
..++.|.+||+.+++. +..+.+|.. .|..++|+|||+.|+
T Consensus 246 ~~~~~l~~~d~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~spdg~~l~ 287 (297)
T 2ojh_A 246 DLDVRVQLMDMDGGNVETLFDLFGGQG--------------------------------------TMNSPNWSPDGDEFA 287 (297)
T ss_dssp SEEEEEEEEETTSCSCEEEEEEEESTT--------------------------------------TSCSCCBCTTSSEEE
T ss_pred cCceEEEEEecCCCCceeeeccCCCCc--------------------------------------ccccceECCCCCEEE
Confidence 0126799999998865 555557752 677899999999999
Q ss_pred EecCCC
Q 011452 473 TGNRHG 478 (485)
Q Consensus 473 Sgs~Dg 478 (485)
+++.|.
T Consensus 288 ~~~~~~ 293 (297)
T 2ojh_A 288 YVRYFP 293 (297)
T ss_dssp EEEECC
T ss_pred EEEecc
Confidence 988764
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-27 Score=248.40 Aligned_cols=279 Identities=13% Similarity=0.030 Sum_probs=202.8
Q ss_pred ccceEEEEEe--cCEEEEEeC-CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQ-SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~-dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
..+|..|+|+ |++||.++. ||+++||++++|+.. .+...+...|++++|||| +.|++++.+++++ ..+
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~-~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~-------~~~ 91 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV-KLNREPINSVLDPHYGVG-RVILVRDVSKGAE-------QHA 91 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-ECCSSCCSEECEECTTCS-EEEEEEECSTTSC-------CEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-eeecccccccccccCCCC-eEEEEeccCCCCc-------ceE
Confidence 3357777777 999999887 999999999766654 466545468999999999 6666654323333 456
Q ss_pred EeEec---cCCcCcccceeeeccccCceEEEEeCCCC--eEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCce
Q 011452 172 IEYIR---RGKPDAGFALFESESLKWPGFVEFDDVNG--KVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM 246 (485)
Q Consensus 172 lw~i~---~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG--~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ 246 (485)
||.+. .|+. ..+.... .....+|+ ||| .++++++.|+++ |||++++++........ .+++|||+|+
T Consensus 92 l~~~~~~~~g~~---~~l~~~~---~~~~~~~s-~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~-~~~~~spDG~ 162 (582)
T 3o4h_A 92 LFKVNTSRPGEE---QRLEAVK---PMRILSGV-DTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG-FGFVSDIRGD 162 (582)
T ss_dssp EEEEETTSTTCC---EECTTSC---SBEEEEEE-ECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS-CEEEEEEETT
T ss_pred EEEEeccCCCcc---ccccCCC---CceeeeeC-CCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC-ceEEECCCCC
Confidence 66553 3432 1122111 12244555 455 577777777766 99999998655443333 8999999776
Q ss_pred EEEEEcCC--CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCC--cEEEEECCCCeeEEecccCCCc
Q 011452 247 LLIFTKAS--GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMT 322 (485)
Q Consensus 247 ll~sss~~--~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~--tIkIWDv~tg~~~~~l~gh~~~ 322 (485)
.+++++.+ ...+|++||+++|++. ++.+|...+..++|+ |||..|+++..|+ +|.+||+.++++. ++.+|...
T Consensus 163 ~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~ 239 (582)
T 3o4h_A 163 LIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASIS-PGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKD 239 (582)
T ss_dssp EEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEEC-TTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSH
T ss_pred EEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceEC-CCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcC
Confidence 66644432 2278999999998865 778888888999997 7888888777888 9999999999988 88889888
Q ss_pred eEEEE--------EcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 323 PSAFI--------FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 323 v~ava--------Fspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
+.+++ |+|||+++++++ |++++||++ |+++.++. .. |.+++|+ ||+++++++.+
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~-g~~~~~~~---~~-----v~~~~~s-dg~~l~~~s~~------- 302 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID-GERVEAPQ---GN-----HGRVVLW-RGKLVTSHTSL------- 302 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET-TEEECCCS---SE-----EEEEEEE-TTEEEEEEEET-------
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE-CCeeccCC---Cc-----eEEEEec-CCEEEEEEcCC-------
Confidence 88888 999999999999 999999999 98776433 22 8899999 99999998862
Q ss_pred cCCCCeEEEEeCCCCeEEEEe
Q 011452 394 EGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 394 ~~~DgtIklWdl~TGk~l~tl 414 (485)
..-..|.+||+.+ .+..|
T Consensus 303 -~~p~~l~~~d~~~--~~~~l 320 (582)
T 3o4h_A 303 -STPPRIVSLPSGE--PLLEG 320 (582)
T ss_dssp -TEEEEEEEETTCC--EEECC
T ss_pred -CCCCeEEEEcCCC--ceEEE
Confidence 1113477777653 44444
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=219.42 Aligned_cols=252 Identities=10% Similarity=0.089 Sum_probs=191.2
Q ss_pred eEEEEeEeccCCcCcccceeeecccc-CceEEEEeCCCCeE-EEEeeCCCcEEEeecCCCeEEEEEc-CC------cEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLK-WPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSIS-DK------NVQE 238 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~-~~~~V~Fs~pnG~~-Las~s~D~tiKlWdl~~g~~l~tl~-~~------~V~~ 238 (485)
.++.+||+.+|++.. .+...... .+..++|+ |||+. +++++.+++|.+||+.+++.+.++. .. .+..
T Consensus 11 ~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 86 (337)
T 1pby_B 11 DKLVVIDTEKMAVDK---VITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFG 86 (337)
T ss_dssp TEEEEEETTTTEEEE---EEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTC
T ss_pred CeEEEEECCCCcEEE---EEEcCCCCCCccceEEc-CCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccc
Confidence 489999998887622 22222111 36789998 78865 5667778999999999999887775 22 6778
Q ss_pred EEEcCCc-eEEEEEcC-----C----CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC
Q 011452 239 IKISPGI-MLLIFTKA-----S----GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (485)
Q Consensus 239 VafSpg~-~ll~sss~-----~----~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~ 308 (485)
++|||++ .++++... + .+..|.+||+++|+.+..+.. ......++|+ |++.+|+++ ++.|.+||+.
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s-~dg~~l~~~--~~~i~~~d~~ 162 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA-RDGSKLYGL--GRDLHVMDPE 162 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC-TTSSCEEEE--SSSEEEEETT
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC-CCCCEEEEe--CCeEEEEECC
Confidence 9999877 44444210 0 347999999999999988874 3456788886 777778877 7899999999
Q ss_pred CCeeEEecccCCCceEEEEEcCCCcEEEEEe--CC-----------------------cEEEEeCC-CcEE-EEeecCCC
Q 011452 309 NFELTEVSRTEFMTPSAFIFLYENQLFLTFR--NR-----------------------TVAVWNFR-GELV-TSFEDHLL 361 (485)
Q Consensus 309 tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D~-----------------------TIklWd~~-G~ll-~tl~gH~~ 361 (485)
+++++..+..+.. ...++|+|||+.|+... ++ +|.+||++ |++. ..+..|..
T Consensus 163 ~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 241 (337)
T 1pby_B 163 AGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV 241 (337)
T ss_dssp TTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS
T ss_pred CCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCC
Confidence 9998877754431 11337899999765544 33 46899996 7764 33445543
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccc
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKK 441 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~ 441 (485)
. +.+++|+|||++|+.+ +++|.+||+.+++.+..+..+.
T Consensus 242 ~-----~~~~~~s~dg~~l~~~-------------~~~v~~~d~~~~~~~~~~~~~~----------------------- 280 (337)
T 1pby_B 242 F-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPLPH----------------------- 280 (337)
T ss_dssp C-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEECSS-----------------------
T ss_pred c-----eeeEEECCCCCEEEEe-------------CCeEEEEECCCCcCcceecCCC-----------------------
Confidence 3 7899999999999987 2899999999999999887543
Q ss_pred cccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 442 HSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 442 ~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+++|+|||+.|++++.|+.|++||.
T Consensus 281 ----------------~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 281 ----------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ----------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred ----------------ceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5678999999999999999999999984
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-25 Score=214.66 Aligned_cols=260 Identities=11% Similarity=0.093 Sum_probs=184.1
Q ss_pred eEEEEeEec-cCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC-CcEEEeecC--CCe--EEEEEc-CCcEEEEE
Q 011452 168 RSTRIEYIR-RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-SIYKVFDLK--NYT--MLYSIS-DKNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~-~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-~tiKlWdl~--~g~--~l~tl~-~~~V~~Va 240 (485)
+++.+|++. .|++. .+....+...+..++|+ |+|++|++++.+ ++|++|++. +++ .+..+. ...+..++
T Consensus 15 ~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (343)
T 1ri6_A 15 QQIHVWNLNHEGALT---LTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 90 (343)
T ss_dssp TEEEEEEECTTSCEE---EEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CeEEEEEECCCCcEE---EeeeEecCCCCceEEEC-CCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEE
Confidence 589999984 45431 11112233456789998 799988888876 999999998 666 344554 34789999
Q ss_pred EcCCce-EEEEEcCCCCeeEEEEec---CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC-CeeEE
Q 011452 241 ISPGIM-LLIFTKASGHVPLKILSI---EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN-FELTE 314 (485)
Q Consensus 241 fSpg~~-ll~sss~~~D~tIklWdi---~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t-g~~~~ 314 (485)
|+|++. +++++. .+++|++||+ .+++.+..+.++ ..+..++|+ |++..+++++ .|++|++||+.+ ++...
T Consensus 91 ~s~dg~~l~~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~~~~~~~ 166 (343)
T 1ri6_A 91 TDHQGQFVFVGSY--NAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVA 166 (343)
T ss_dssp ECTTSSEEEEEET--TTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred EcCCCCEEEEEec--CCCeEEEEECCCCccccccccccCC-CCceEEEEC-CCCCEEEEecCCCCEEEEEEecCCCceee
Confidence 998666 444433 3479999999 555666777654 457789986 7788888886 899999999998 76542
Q ss_pred ----ecc-cCCCceEEEEEcCCCcEE-EEEe-CCcEEEEeCC---CcE--EEEeecCCC-CCCCCCeeEEEECCCCCEEE
Q 011452 315 ----VSR-TEFMTPSAFIFLYENQLF-LTFR-NRTVAVWNFR---GEL--VTSFEDHLL-WHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 315 ----~l~-gh~~~v~avaFspdg~ll-aS~s-D~TIklWd~~---G~l--l~tl~gH~~-~~~~~~v~svafSpDG~~La 381 (485)
... .....+..++|+|||++| +++. +++|++||++ |++ +..+..... ......+..++|+|||++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 167 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred ecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEE
Confidence 222 234578999999999965 4554 9999999993 543 333331110 00011267899999999887
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCC--C--CeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccC
Q 011452 382 SYCKADSDDPLAEGNAGSINISNIL--T--GKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALE 457 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~--T--Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (485)
.++. .|++|++||+. + .+.+..+..+.
T Consensus 247 v~~~----------~~~~i~v~d~~~~~~~~~~~~~~~~~~--------------------------------------- 277 (343)
T 1ri6_A 247 ACDR----------TASLITVFSVSEDGSVLSKEGFQPTET--------------------------------------- 277 (343)
T ss_dssp EEET----------TTTEEEEEEECTTSCCEEEEEEEECSS---------------------------------------
T ss_pred EEec----------CCCEEEEEEEcCCCCceEEeeeecCCC---------------------------------------
Confidence 5543 27999999998 3 35666665543
Q ss_pred CeEEEEEcCCCCEEEEec-CCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGN-RHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs-~DgtVklWd 484 (485)
.+.+++|+|||+.|+.++ .|+.|+||+
T Consensus 278 ~~~~~~~s~dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 278 QPRGFNVDHSGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence 467899999999888888 689999995
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=241.83 Aligned_cols=286 Identities=12% Similarity=0.104 Sum_probs=203.3
Q ss_pred cceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 96 s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
..|..++|+ ...|+.. .++++++||+.+|++.. +.. +...+.+++|||||+.||++. + .++.+|+
T Consensus 82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~-l~~-~~~~~~~~~~SpdG~~la~~~----~-------~~i~v~~ 147 (706)
T 2z3z_A 82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTY-LFD-TNEETASLDFSPVGDRVAYVR----N-------HNLYIAR 147 (706)
T ss_dssp CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEE-EEC-CTTCCTTCEECTTSSEEEEEE----T-------TEEEEEE
T ss_pred cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEE-ccC-CcccccCCcCCCCCCEEEEEE----C-------CeEEEEe
Confidence 346677777 3334433 46999999999887765 433 455689999999999998843 2 4899999
Q ss_pred ecc-----CCcCcccceeeec-------------cccCceEEEEeCCCCeEEEEee------------------------
Q 011452 175 IRR-----GKPDAGFALFESE-------------SLKWPGFVEFDDVNGKVLTYSA------------------------ 212 (485)
Q Consensus 175 i~~-----G~~~~~~~lf~~~-------------~~~~~~~V~Fs~pnG~~Las~s------------------------ 212 (485)
+.. |+.. .+.... ...++..++|| |||+.|++++
T Consensus 148 ~~~~~~~~g~~~---~~~~~~~~~~~~g~~~~~ee~~~~~~~~~S-pDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~ 223 (706)
T 2z3z_A 148 GGKLGEGMSRAI---AVTIDGTETLVYGQAVHQREFGIEKGTFWS-PKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPL 223 (706)
T ss_dssp CBCTTSCCCCCE---ESCSCCBTTEEESSCCGGGCTTCCCSEEEC-TTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEE
T ss_pred cCcccccCCCcE---EeccCCCCCeEcccchhhhhcCCCceEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCceEEe
Confidence 987 7752 122111 11234689998 8999999998
Q ss_pred ---------CCCcEEEeecCCCeEEEEEc----CCcEEEEEEcCCceEEEEEcCC---CCeeEEEEecCCCeEEEEee--
Q 011452 213 ---------QDSIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIMLLIFTKAS---GHVPLKILSIEDGTVLKSFN-- 274 (485)
Q Consensus 213 ---------~D~tiKlWdl~~g~~l~tl~----~~~V~~VafSpg~~ll~sss~~---~D~tIklWdi~tG~~L~tl~-- 274 (485)
.+.+|++||+++++...... ...|..++|||++..+++++.+ .+.+|++||+++|+.++.+.
T Consensus 224 ~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~ 303 (706)
T 2z3z_A 224 YYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVE 303 (706)
T ss_dssp CCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred eCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEc
Confidence 45789999999998654432 3569999999977655443322 22599999999995544443
Q ss_pred cCCcc---eeEEEEEec--CCCEEEEEeCCCcEEEEECC-CCeeEEecccCCCceEE-EEEcCCCcEEEEEe--CC----
Q 011452 275 HLLHR---NKKVDFIEQ--FNEKLLVKQENENLQILDVR-NFELTEVSRTEFMTPSA-FIFLYENQLFLTFR--NR---- 341 (485)
Q Consensus 275 ~~~~~---~~~V~f~~~--~~~~lls~s~D~tIkIWDv~-tg~~~~~l~gh~~~v~a-vaFspdg~llaS~s--D~---- 341 (485)
.+... +..++|+ | ++..+++++.|++++||++. +++.++.+.+|...+.. ++|+|||+.|+.++ ++
T Consensus 304 ~~~~~~~~~~~~~~s-p~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~ 382 (706)
T 2z3z_A 304 TDKHYVEPLHPLTFL-PGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLER 382 (706)
T ss_dssp ECSSCCCCCSCCEEC-TTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCB
T ss_pred cCCCeECccCCceee-cCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceE
Confidence 22221 2568896 6 67766667899999999887 67788888888877877 79999998876655 44
Q ss_pred cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 342 TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.|..||+++..++.+. |... +.+++|||||++|+..+.+ ....+.|.+||+.+++ +..+
T Consensus 383 ~l~~~d~~~~~~~~l~-~~~~-----~~~~~~spdg~~l~~~~~~-------~~~p~~i~l~d~~~~~-~~~~ 441 (706)
T 2z3z_A 383 HFYCIDIKGGKTKDLT-PESG-----MHRTQLSPDGSAIIDIFQS-------PTVPRKVTVTNIGKGS-HTLL 441 (706)
T ss_dssp EEEEEETTCCCCEESC-CSSS-----EEEEEECTTSSEEEEEEEC-------SSCSCEEEEEESSSCE-EEEE
T ss_pred EEEEEEcCCCCceecc-CCCc-----eEEEEECCCCCEEEEEecC-------CCCCcEEEEEECCCCe-Eeec
Confidence 5666677643355555 4433 8999999999999887652 1123679999999988 4444
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-26 Score=212.98 Aligned_cols=249 Identities=12% Similarity=0.002 Sum_probs=189.5
Q ss_pred EEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc-CCcCcccceee
Q 011452 110 ALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFE 188 (485)
Q Consensus 110 s~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~-G~~~~~~~lf~ 188 (485)
+.+.|+++++||..+|+... +.. |...|.+++|+|||+.|++++ + ..+.+|++.. |++. .++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-~~~-~~~~v~~~~~spdg~~l~~~~----~-------~~i~~~d~~~~~~~~---~~~~ 80 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-VWQ-TPELFEAPNWSPDGKYLLLNS----E-------GLLYRLSLAGDPSPE---KVDT 80 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-EEE-ESSCCEEEEECTTSSEEEEEE----T-------TEEEEEESSSCCSCE---ECCC
T ss_pred CCCcceeEEEEeCCCCceee-ecc-CCcceEeeEECCCCCEEEEEc----C-------CeEEEEeCCCCCCce---Eecc
Confidence 45789999999999888765 444 677899999999999998854 3 3899999988 7762 2332
Q ss_pred eccccCceEEEEeCCCCeEEEEee--CCCcEEEeec--CCCeEEEEEc-CCcEEEEEEcCCceEEE-EEcCCCCeeEEEE
Q 011452 189 SESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDL--KNYTMLYSIS-DKNVQEIKISPGIMLLI-FTKASGHVPLKIL 262 (485)
Q Consensus 189 ~~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl--~~g~~l~tl~-~~~V~~VafSpg~~ll~-sss~~~D~tIklW 262 (485)
......+..++|+ |||+.|++++ .|+.++||.+ .+++ ...+. ...+..++|||++..++ ++.. |++++||
T Consensus 81 ~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~--~~~~~l~ 156 (297)
T 2ojh_A 81 GFATICNNDHGIS-PDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIR--DQVFDIY 156 (297)
T ss_dssp TTCCCBCSCCEEC-TTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEE--TTEEEEE
T ss_pred ccccccccceEEC-CCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECC--CCceEEE
Confidence 2222345578998 7999999998 4466777765 4554 34443 45699999998666444 4433 3688999
Q ss_pred ec--CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 263 SI--EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NFELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 263 di--~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~-tg~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
++ .+++ ...+..|...+..++|+ |++..|++++ .|++++||++. .+..+..+..|...+..++|+|||++|+.+
T Consensus 157 ~~~~~~~~-~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 234 (297)
T 2ojh_A 157 SMDIDSGV-ETRLTHGEGRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFV 234 (297)
T ss_dssp EEETTTCC-EEECCCSSSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEE
T ss_pred EEECCCCc-ceEcccCCCccccceEC-CCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEE
Confidence 84 4554 45666677788899996 7788888775 69999999986 566677788888899999999999999988
Q ss_pred e-C-----------CcEEEEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 339 R-N-----------RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 339 s-D-----------~TIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+ | ..|.+||++ +++ +..+.+|... +..++|+|||++|++++.
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 235 SYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT-----MNSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp EEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT-----SCSCCBCTTSSEEEEEEE
T ss_pred EcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc-----cccceECCCCCEEEEEEe
Confidence 7 6 569999996 665 5556688766 888999999999999987
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-25 Score=214.85 Aligned_cols=270 Identities=10% Similarity=0.109 Sum_probs=188.8
Q ss_pred CCCeEEeeecc--cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee-e
Q 011452 113 QSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE-S 189 (485)
Q Consensus 113 ~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~-~ 189 (485)
.++.+.+|.++ +|+....-...+......|+|+|||+ |++++..+ .+ ..+.+|++..|++.. +-. .
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~-~~------~~v~~~~~~~g~~~~---~~~~~ 82 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKED-DE------GGIAAWQIDGQTAHK---LNTVV 82 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEET-TE------EEEEEEEEETTEEEE---EEEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecC-CC------ceEEEEEecCCcEEE---eeeee
Confidence 35667777654 56654311122344578899999999 77666432 23 689999997776421 111 1
Q ss_pred ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecC-CCe--EEEEEcC-----------CcEEEEEEcCCceEEEEEcCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLK-NYT--MLYSISD-----------KNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~-~g~--~l~tl~~-----------~~V~~VafSpg~~ll~sss~~ 254 (485)
.....|..|+|+ |||++|++++ .|++|++||+. +|+ .+..+.. ..+..++|||++.++++...
T Consensus 83 ~~~~~p~~~a~s-pdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~- 160 (347)
T 3hfq_A 83 APGTPPAYVAVD-EARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG- 160 (347)
T ss_dssp EESCCCSEEEEE-TTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-
T ss_pred cCCCCCEEEEEC-CCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-
Confidence 234567799998 7999888777 78999999995 444 3444421 24889999997776666443
Q ss_pred CCeeEEEEecC-CCeEEE--EeecCC-cceeEEEEEecCCCEEEEE-eCCCcEEEEECCC--CeeE--EecccCC-----
Q 011452 255 GHVPLKILSIE-DGTVLK--SFNHLL-HRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--FELT--EVSRTEF----- 320 (485)
Q Consensus 255 ~D~tIklWdi~-tG~~L~--tl~~~~-~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t--g~~~--~~l~gh~----- 320 (485)
+.+|++|++. +|++.. .+..+. .....++|+ |++.++++. ..+++|++||+.. +++. ..+....
T Consensus 161 -~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 161 -SDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp -TTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred -CCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 4799999998 676543 223222 245678996 778777775 5889999999884 6542 2222222
Q ss_pred -CceEEEEEcCCCcEE-EEEe-CCcEEEEeCC--C--cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 321 -MTPSAFIFLYENQLF-LTFR-NRTVAVWNFR--G--ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 321 -~~v~avaFspdg~ll-aS~s-D~TIklWd~~--G--~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
..+..++|+|||++| ++.. +++|.+|+++ | +.+.++..|... +..++|+|||++|++++.+
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~-----~~~~~~spdg~~l~v~~~~------- 306 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF-----PRDFDLDPTEAFVVVVNQN------- 306 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC-----CCEEEECTTSSEEEEEETT-------
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC-----cCeEEECCCCCEEEEEEcC-------
Confidence 458999999999966 6666 9999999985 5 456677776555 7899999999999988762
Q ss_pred cCCCCeEEEE--eCCCCeEEE
Q 011452 394 EGNAGSINIS--NILTGKCLA 412 (485)
Q Consensus 394 ~~~DgtIklW--dl~TGk~l~ 412 (485)
+++|.|| |..+|+...
T Consensus 307 ---~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 307 ---TDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ---TTEEEEEEECTTTCCEEE
T ss_pred ---CCcEEEEEEeCCCCeEEe
Confidence 6899999 667888653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.4e-24 Score=206.13 Aligned_cols=264 Identities=14% Similarity=0.114 Sum_probs=203.3
Q ss_pred cceEEEEEe--cCEEEEEeC-------CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 96 SKIIEIVAA--RDIVFALAQ-------SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 96 s~V~~i~~s--~~~ias~s~-------dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
..+.+++++ ++.|++++. ++++.+||..+|+.+.++... ..+.+++|+|||+.|+.++. .+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~---~~----- 110 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNT---VN----- 110 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEET---TT-----
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEec---CC-----
Confidence 456678888 778887774 679999999999999988763 24789999999997766442 23
Q ss_pred eeEEEEeEeccCCcCcccceeeeccc--------cCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEc--CC
Q 011452 167 CRSTRIEYIRRGKPDAGFALFESESL--------KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS--DK 234 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~~~~--------~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~--~~ 234 (485)
.++.+||+.+|+... .+..... .++..++|+ |+|+.|..++ .|++|.+||+++++.+..+. +.
T Consensus 111 -~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 185 (353)
T 3vgz_A 111 -SAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVAD-DATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK 185 (353)
T ss_dssp -TEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEE-TTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCT
T ss_pred -CEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEEC-CCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCC
Confidence 489999998888632 2221110 125679998 7888666554 58999999999999998886 45
Q ss_pred cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec----CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCC
Q 011452 235 NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRN 309 (485)
Q Consensus 235 ~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~----~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~t 309 (485)
.+..++|+|++..+..+. .++.|.+||+++|+.+.++.. +.+....++|+ |++..+++++ .++.|.+||+.+
T Consensus 186 ~~~~~~~s~dg~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~l~~~~~~~~~v~~~d~~~ 262 (353)
T 3vgz_A 186 MSTGLALDSEGKRLYTTN--ADGELITIDTADNKILSRKKLLDDGKEHFFINISLD-TARQRAFITDSKAAEVLVVDTRN 262 (353)
T ss_dssp TCCCCEEETTTTEEEEEC--TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEE-TTTTEEEEEESSSSEEEEEETTT
T ss_pred ccceEEECCCCCEEEEEc--CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEEC-CCCCEEEEEeCCCCEEEEEECCC
Confidence 689999998665444433 357999999999999998874 44556689997 6788888775 669999999999
Q ss_pred CeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 310 FELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 310 g~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
++.+..+..+. ...++|+|||+ ++++.. +++|.+||.. ++.+.++..+. . +.+++|+|||++|+.++.
T Consensus 263 ~~~~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~-----~~~~~~s~dg~~l~v~~~ 333 (353)
T 3vgz_A 263 GNILAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-H-----PNSLALSADGKTLYVSVK 333 (353)
T ss_dssp CCEEEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-E-----EEEEEECTTSCEEEEEEE
T ss_pred CcEEEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-C-----CCeEEEcCCCCEEEEEEc
Confidence 99888776443 46799999998 556665 9999999996 99998887654 2 789999999997777665
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-24 Score=212.51 Aligned_cols=262 Identities=10% Similarity=0.129 Sum_probs=175.8
Q ss_pred eEEEEeEe--ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCe--EEEEE--cCCcEEEE
Q 011452 168 RSTRIEYI--RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYT--MLYSI--SDKNVQEI 239 (485)
Q Consensus 168 ~t~~lw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~--~l~tl--~~~~V~~V 239 (485)
+.+.+|.+ .+|++.. +-.......|..++|+ |||++++++.. |++|++||+.+++ .+.++ ++..+..|
T Consensus 16 ~~i~v~~~d~~tg~~~~---~~~~~~~~~p~~~a~s-pdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~ 91 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTN---DGLLAATQNPTYLALS-AKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYV 91 (347)
T ss_dssp CEEEEEEEETTTTEEEE---EEEEEECSCCCCEEEC-TTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEE
T ss_pred CCEEEEEEcCCCCeEEE---eeeeeccCCcceEEEc-cCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEE
Confidence 56677766 3455421 1111234567789998 79995444432 7999999998887 34443 35678899
Q ss_pred EEcCCceEEEEEcCCCCeeEEEEecC-CCe--EEEEeecC---------CcceeEEEEEecCCCEEEEE-eCCCcEEEEE
Q 011452 240 KISPGIMLLIFTKASGHVPLKILSIE-DGT--VLKSFNHL---------LHRNKKVDFIEQFNEKLLVK-QENENLQILD 306 (485)
Q Consensus 240 afSpg~~ll~sss~~~D~tIklWdi~-tG~--~L~tl~~~---------~~~~~~V~f~~~~~~~lls~-s~D~tIkIWD 306 (485)
+|||++.++..++. .+++|++|++. +|+ .+..+... ..++..++|+ |++. ++++ ..+++|++||
T Consensus 92 a~spdg~~l~~~~~-~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~s-pdg~-l~v~~~~~~~v~~~~ 168 (347)
T 3hfq_A 92 AVDEARQLVYSANY-HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLT-PDNR-LAVIDLGSDKVYVYN 168 (347)
T ss_dssp EEETTTTEEEEEET-TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEEC-TTSC-EEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeC-CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEEC-CCCc-EEEEeCCCCEEEEEE
Confidence 99997664444332 34799999995 443 34444321 1236679996 6777 5555 5789999999
Q ss_pred CC-CCeeEEe--ccc-CCCceEEEEEcCCCcEEEE-Ee-CCcEEEEeCC---CcE--EEEeecCCC-CCCCCCeeEEEEC
Q 011452 307 VR-NFELTEV--SRT-EFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR---GEL--VTSFEDHLL-WHPDCNTNNIYIT 374 (485)
Q Consensus 307 v~-tg~~~~~--l~g-h~~~v~avaFspdg~llaS-~s-D~TIklWd~~---G~l--l~tl~gH~~-~~~~~~v~svafS 374 (485)
+. ++++... +.. ....+..++|+|||++|+. .. +++|.+|+++ |++ +..+..+.. +.....+..++||
T Consensus 169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence 99 6765432 122 2337889999999995554 45 8999999985 553 334433321 0001227889999
Q ss_pred CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CC--eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccc
Q 011452 375 SDQDLIISYCKADSDDPLAEGNAGSINISNIL-TG--KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRST 451 (485)
Q Consensus 375 pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TG--k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (485)
|||++|+.++. .+++|.+||+. +| +.+.++..|..
T Consensus 249 pdG~~l~v~~~----------~~~~v~v~~~~~~g~~~~~~~~~~~~~-------------------------------- 286 (347)
T 3hfq_A 249 HDGHFLYVSNR----------GYNTLAVFAVTADGHLTLIQQISTEGD-------------------------------- 286 (347)
T ss_dssp TTSCEEEEEEE----------TTTEEEEEEECGGGCEEEEEEEECSSS--------------------------------
T ss_pred CCCCEEEEEeC----------CCCEEEEEEECCCCcEEEeEEEecCCC--------------------------------
Confidence 99998854443 16999999997 33 66677766541
Q ss_pred hhcccCCeEEEEEcCCCCEEEEecCC-CcEEEcc
Q 011452 452 VAEALEDITALFYDEDRNEIYTGNRH-GLVHVWS 484 (485)
Q Consensus 452 ~~~~l~~V~sl~fspDg~~LaSgs~D-gtVklWd 484 (485)
.+.+++|+|||+.||+++.+ ++|.||+
T Consensus 287 ------~~~~~~~spdg~~l~v~~~~~~~v~v~~ 314 (347)
T 3hfq_A 287 ------FPRDFDLDPTEAFVVVVNQNTDNATLYA 314 (347)
T ss_dssp ------CCCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ------CcCeEEECCCCCEEEEEEcCCCcEEEEE
Confidence 57789999999999888765 9999994
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=214.46 Aligned_cols=320 Identities=10% Similarity=0.022 Sum_probs=205.7
Q ss_pred EeeecccCcEEEEeecCCcccEEE-----EEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc
Q 011452 118 AAFCRETNQRICFLNVTADEVIRS-----LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL 192 (485)
Q Consensus 118 klW~~~tG~~l~tl~g~~~~~i~s-----v~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~ 192 (485)
..++..+|..+..|.. +.....+ .+|||||+.||.++.... . ..+.+|++..|++. ++... +.
T Consensus 13 ~~~~~~~g~~~~~lt~-~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g-~------~~l~~~d~~~g~~~---~lt~~-~~ 80 (388)
T 3pe7_A 13 TYQDASTGAQVTRLTP-PDVTCHRNYFYQKCFTRDGSKLLFGGAFDG-P------WNYYLLDLNTQVAT---QLTEG-RG 80 (388)
T ss_dssp EEECTTTCCEEEECSC-TTSCEECCCTTSCCBCTTSCEEEEEECTTS-S------CEEEEEETTTCEEE---ECCCS-SC
T ss_pred EEecCCCCcceEEecC-CcccccchhhcCccCCCCCCEEEEEEcCCC-C------ceEEEEeCCCCceE---EeeeC-CC
Confidence 3456778988888876 4445566 889999999999874211 1 25777888777752 23322 22
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--EEEcCCcEEEEE--EcCCceEEEEEc----------------
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIK--ISPGIMLLIFTK---------------- 252 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l--~tl~~~~V~~Va--fSpg~~ll~sss---------------- 252 (485)
..+..++|+ |||+.|++++.|+++.+||+.+++.. +.++...+.... ++|++.+++...
T Consensus 81 ~~~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 81 DNTFGGFLS-PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp BCSSSCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHH
T ss_pred CCccceEEc-CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhh
Confidence 222356898 89999999999999999999999854 444455554443 478777665321
Q ss_pred ----CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-CCCEEEEEeC------CCcEEEEECCCCeeEEecccCC-
Q 011452 253 ----ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQE------NENLQILDVRNFELTEVSRTEF- 320 (485)
Q Consensus 253 ----~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~-~~~~lls~s~------D~tIkIWDv~tg~~~~~l~gh~- 320 (485)
.+.+..|.+||+++|+..... .+...+..++|+ | ++.+|+..+. +..|.++|+.+++......++.
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~~l~-~~~~~~~~~~~s-p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGESTVIL-QENQWLGHPIYR-PYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEE-TTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCceEEee-cCCccccccEEC-CCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 234478999999999765444 444667889997 6 7888887654 3478888888776555444332
Q ss_pred CceEEEEEcCCCcEEEEEe--CC----cEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 321 MTPSAFIFLYENQLFLTFR--NR----TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s--D~----TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
..+..++|||||+.|+..+ ++ +|.+||+. |+ .+..+.++.... .....++|||||++|+....+. ..
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~--~~~~~~~~spdg~~l~~~~~~~--~~ 313 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLM--SNYDGSLMVGDGSDAPVDVQDD--SG 313 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEE--ECTTSSEEEEEECCC-----------
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeee--ecCCCCeEccCCCcceeEeeec--cc
Confidence 3577889999999776654 22 39999996 76 455555522110 0012347999999998653200 00
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE
Q 011452 392 LAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI 471 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L 471 (485)
...+.+..|.+||+.+|+. ..|..|..... .-.. .....+.+++|||||+.|
T Consensus 314 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~----------------~~~~-----------~~~~~~~~~~~spDg~~l 365 (388)
T 3pe7_A 314 YKIENDPFLYVFNMKNGTQ-HRVARHDTSWK----------------VFEG-----------DRQVTHPHPSFTPDDKQI 365 (388)
T ss_dssp ---CCCCEEEEEETTTTEE-EEEEECCCCCC----------------CBTT-----------BSSTTCCCCEECTTSSEE
T ss_pred cccCCCCEEEEEeccCCce-EEeccccCccc----------------cccc-----------ccccCCCCccCCCCCCEE
Confidence 0012367999999998875 55666641000 0000 000136678999999988
Q ss_pred EEec-CCCcEEEcc
Q 011452 472 YTGN-RHGLVHVWS 484 (485)
Q Consensus 472 aSgs-~DgtVklWd 484 (485)
+.++ .++..+||.
T Consensus 366 ~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 366 LFTSDVHGKPALYL 379 (388)
T ss_dssp EEEECTTSSCEEEE
T ss_pred EEEecCCCceeEEE
Confidence 8665 688888884
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-24 Score=208.50 Aligned_cols=267 Identities=7% Similarity=-0.048 Sum_probs=194.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+.++++.+.++++++||..+|+.+.++.......+.+++|+|||+.|+.++ ..+ .++.+|++.+|+...
T Consensus 11 ~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~---~~~------~~i~~~d~~t~~~~~-- 79 (349)
T 1jmx_B 11 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTF-- 79 (349)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEE--
T ss_pred CEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe---CCC------CcEEEEeCCCCcEEE--
Confidence 778999999999999999999999988764323578999999999776544 233 489999988887621
Q ss_pred ceeeecc-----ccCceEEEEeCCCCeEEEEeeCC------------CcEEEeecCCCe---EEEEEc-CCcEEEEEEcC
Q 011452 185 ALFESES-----LKWPGFVEFDDVNGKVLTYSAQD------------SIYKVFDLKNYT---MLYSIS-DKNVQEIKISP 243 (485)
Q Consensus 185 ~lf~~~~-----~~~~~~V~Fs~pnG~~Las~s~D------------~tiKlWdl~~g~---~l~tl~-~~~V~~VafSp 243 (485)
.+.... ...+..++|+ |||++|+.++.| ++|.+||+++++ .+..+. ...+.+++|+|
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~ 157 (349)
T 1jmx_B 80 -HANLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAAD 157 (349)
T ss_dssp -EEESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECT
T ss_pred -EEEcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECC
Confidence 122111 1236689998 799999988865 999999999854 334443 34688999999
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc------------------------ceeEEEEEecCCC--------
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH------------------------RNKKVDFIEQFNE-------- 291 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~------------------------~~~~V~f~~~~~~-------- 291 (485)
++.+++. + ..|++||+.+|+++.++..+.. ....++|. +++.
T Consensus 158 dg~l~~~-~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~ 231 (349)
T 1jmx_B 158 DGSLYVA-G----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARF-KDDKQDPATADL 231 (349)
T ss_dssp TSCEEEE-S----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--------CCCEE
T ss_pred CCcEEEc-c----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeec-CCCcCCcccccc
Confidence 8875553 2 3499999999999998874310 11234443 1111
Q ss_pred --EEE-EEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCC
Q 011452 292 --KLL-VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDC 366 (485)
Q Consensus 292 --~ll-s~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~ 366 (485)
.++ ....++++++|++. .+...+.+++|+| ||++++++ +++|.+||+. ++++.++..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~~~~----- 296 (349)
T 1jmx_B 232 LYGYLSVDLKTGKTHTQEFA---------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLDHT----- 296 (349)
T ss_dssp EEEEEEEETTTCCEEEEEEE---------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECSSC-----
T ss_pred ceeEEEEeccCCcEEecccc---------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcCCCC-----
Confidence 011 12244555555542 3556789999999 99999988 8999999996 998888874321
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+..++|+|||++|++++. +++|++||+.+++++.+++.+
T Consensus 297 -~~~~~~s~dg~~l~~~~~-----------~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 297 -YYCVAFDKKGDKLYLGGT-----------FNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp -CCEEEECSSSSCEEEESB-----------SSEEEEEETTTTEEEEEEECS
T ss_pred -ccceEECCCCCEEEEecC-----------CCeEEEEeccccceeeeeecC
Confidence 578999999999988765 699999999999999998765
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-26 Score=246.80 Aligned_cols=273 Identities=10% Similarity=0.126 Sum_probs=198.8
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc--cCceEEEEeCCCCeEEEEeeC----
Q 011452 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL--KWPGFVEFDDVNGKVLTYSAQ---- 213 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~--~~~~~V~Fs~pnG~~Las~s~---- 213 (485)
.++.|+|||+.+++ + .| +++++|++..|+. ..++..... ..+..++|| |||+.||+++.
T Consensus 19 ~~~~~s~dg~~~~~-~----~d------~~i~~~~~~~g~~---~~~~~~~~~~~~~~~~~~~S-pDg~~la~~~~~~~~ 83 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-S----AD------NNIVLYNIETGQS---YTILSNRTMKSVNASNYGLS-PDRQFVYLESDYSKL 83 (719)
T ss_dssp CCCEESSSSEEEEE-C----TT------SCEEEEESSSCCE---EEEECHHHHHTTTCSEEEEC-TTSSEEEEEEEEEEC
T ss_pred CccEECCCCeEEEE-c----CC------CCEEEEEcCCCcE---EEEEccccccccceeeEEEC-CCCCeEEEEecCcee
Confidence 47899999965543 2 23 5899999988886 234443111 126689998 89999999886
Q ss_pred -----CCcEEEeecCCCeEE--EEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe-ecCCcce-----
Q 011452 214 -----DSIYKVFDLKNYTML--YSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF-NHLLHRN----- 280 (485)
Q Consensus 214 -----D~tiKlWdl~~g~~l--~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl-~~~~~~~----- 280 (485)
|++|+|||+++++++ ..+ ...|..++|||+|..+++.+ |.+|++||+.+|++.+.. .++...+
T Consensus 84 ~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~---~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~ 159 (719)
T 1z68_A 84 WRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY---QNNIYLKQRPGDPPFQITFNGRENKIFNGIP 159 (719)
T ss_dssp SSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCCCCBTTTEEESSC
T ss_pred EEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE---CCeEEEEeCCCCCcEEEecCCCcCCeEcccc
Confidence 799999999999873 223 25688999999776666654 369999999999886533 2322211
Q ss_pred ------------eEEEEEecCCCEEEEEeCCC----------------------------------cEEEEECCCCeeE-
Q 011452 281 ------------KKVDFIEQFNEKLLVKQENE----------------------------------NLQILDVRNFELT- 313 (485)
Q Consensus 281 ------------~~V~f~~~~~~~lls~s~D~----------------------------------tIkIWDv~tg~~~- 313 (485)
..++|+ |||.+|++++.|. +|++||+.+++++
T Consensus 160 ~~v~~ee~~~~~~~~~wS-PDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~ 238 (719)
T 1z68_A 160 DWVYEEEMLATKYALWWS-PNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVG 238 (719)
T ss_dssp CHHHHHHTTCSSCCEEEC-TTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHC
T ss_pred cceeeeecccCcccEEEC-CCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccc
Confidence 489997 8899999987542 8999999998863
Q ss_pred --E-----ecccCCCceEEEEEcCCCcEEEEEe-C----CcEEEEe----CC-CcEEEEe----ecCCCCCCCCCee---
Q 011452 314 --E-----VSRTEFMTPSAFIFLYENQLFLTFR-N----RTVAVWN----FR-GELVTSF----EDHLLWHPDCNTN--- 369 (485)
Q Consensus 314 --~-----~l~gh~~~v~avaFspdg~llaS~s-D----~TIklWd----~~-G~ll~tl----~gH~~~~~~~~v~--- 369 (485)
+ .+.+|...+.+++||||++++++.. . ..|.+|| .. |++...+ ++|..| +.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~-----~~~~~ 313 (719)
T 1z68_A 239 PQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGW-----AGGFF 313 (719)
T ss_dssp CEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSC-----SSSSS
T ss_pred eeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCce-----Ecccc
Confidence 2 2447888999999999999888854 2 2488899 85 7776666 588877 55
Q ss_pred --EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccc
Q 011452 370 --NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASR 447 (485)
Q Consensus 370 --svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (485)
.++|||||+.|+..+.+ .+....|.+||+.+++ +..|..+.
T Consensus 314 ~~~~~~spdg~~l~~~~~~-------~~g~~~l~~~~~~~~~-~~~lt~~~----------------------------- 356 (719)
T 1z68_A 314 VSTPVFSYDAISYYKIFSD-------KDGYKHIHYIKDTVEN-AIQITSGK----------------------------- 356 (719)
T ss_dssp CCCCEECTTSSCEEEEEEC-------TTSCEEEEEESSCSTT-CEECSCSS-----------------------------
T ss_pred CCccEECCCCCeEEEEEEc-------cCCceEEEEEECCCCc-eEecccCc-----------------------------
Confidence 78999999976653220 0113478888988877 55666554
Q ss_pred cccchhcccCCeEEEEEcCCCCEEEEecCC-----CcEEEcc
Q 011452 448 IRSTVAEALEDITALFYDEDRNEIYTGNRH-----GLVHVWS 484 (485)
Q Consensus 448 ~~~~~~~~l~~V~sl~fspDg~~LaSgs~D-----gtVklWd 484 (485)
..|..+.++ ||+.|+..+.+ ++++||.
T Consensus 357 ---------~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 357 ---------WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ---------SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred ---------eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 167778888 88877666654 8999996
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=208.27 Aligned_cols=229 Identities=7% Similarity=0.021 Sum_probs=178.1
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CC--cEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK--NVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~--~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
++|+ ++++++++++.|++|++||+++++.+.++. +. .+..++|+|++. ++++.. .+.+|.+||+++|+.+.++
T Consensus 5 ~~~~-~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~--~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 5 PALK-AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN--HYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCC-TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET--TTTEEEEEETTTTEEEEEE
T ss_pred cccc-CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC--CCCcEEEEeCCCCcEEEEE
Confidence 5675 789999999999999999999999988876 33 588999999765 555543 4479999999999999888
Q ss_pred ecCC------cceeEEEEEecCCCEEEEEeCC------------CcEEEEECCCCee---EEecccCCCceEEEEEcCCC
Q 011452 274 NHLL------HRNKKVDFIEQFNEKLLVKQEN------------ENLQILDVRNFEL---TEVSRTEFMTPSAFIFLYEN 332 (485)
Q Consensus 274 ~~~~------~~~~~V~f~~~~~~~lls~s~D------------~tIkIWDv~tg~~---~~~l~gh~~~v~avaFspdg 332 (485)
.... ..+..++|+ |++.+|++++.+ ++|.+||+.+++. +..+.. ...+.+++|+|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg 159 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDG 159 (349)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTS
T ss_pred EcccccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCC
Confidence 7321 125688986 788888888754 9999999998554 334433 3468899999999
Q ss_pred cEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCC-----------------------------------------------
Q 011452 333 QLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHP----------------------------------------------- 364 (485)
Q Consensus 333 ~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~----------------------------------------------- 364 (485)
++++ ++ +.|.+||.. |+++.++..+....+
T Consensus 160 ~l~~-~~-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 237 (349)
T 1jmx_B 160 SLYV-AG-PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLS 237 (349)
T ss_dssp CEEE-ES-SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEE
T ss_pred cEEE-cc-CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEE
Confidence 9555 43 349999995 998888765420000
Q ss_pred ----------------CCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccc
Q 011452 365 ----------------DCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427 (485)
Q Consensus 365 ----------------~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~ 427 (485)
...+.+++|+| ||++|+.+ . ++|.+||+.+++.+.++..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~------------~~v~~~d~~~~~~~~~~~~~~--------- 295 (349)
T 1jmx_B 238 VDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-L------------NRLAKYDLKQRKLIKAANLDH--------- 295 (349)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-E------------SEEEEEETTTTEEEEEEECSS---------
T ss_pred EeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-c------------CeEEEEECccCeEEEEEcCCC---------
Confidence 01245778889 99999987 3 799999999999999886532
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+++|+|||+.|++++.+++|++||.
T Consensus 296 ------------------------------~~~~~~~s~dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 296 ------------------------------TYYCVAFDKKGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ------------------------------CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred ------------------------------CccceEECCCCCEEEEecCCCeEEEEec
Confidence 5668999999999999999999999983
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-22 Score=199.06 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=184.9
Q ss_pred EEEEEe----CCCeEEeeec--ccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEecc--C
Q 011452 107 IVFALA----QSGVCAAFCR--ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR--G 178 (485)
Q Consensus 107 ~ias~s----~dgtiklW~~--~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~--G 178 (485)
+++.++ .++.+.+|.+ ++|+....... +......|+|+|||+.|++++.++..+ ..+.+|++.. |
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~------~~v~~~~~~~~~g 87 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQ------AAVSAFAFDKEKG 87 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTT------CEEEEEEEETTTT
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCC------CcEEEEEEeCCCC
Confidence 445553 4678999876 56765443333 555678899999999999988653233 5888998854 5
Q ss_pred CcCcccceeeec-cccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEEE------EEcC----------CcEEEEE
Q 011452 179 KPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLY------SISD----------KNVQEIK 240 (485)
Q Consensus 179 ~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l~------tl~~----------~~V~~Va 240 (485)
++. .+.... ....+..++| +|+.|+.++ .|++|.+|++.....+. ...+ ..+.+++
T Consensus 88 ~~~---~~~~~~~~~~~p~~~~~---dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 161 (361)
T 3scy_A 88 TLH---LLNTQKTMGADPCYLTT---NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVR 161 (361)
T ss_dssp EEE---EEEEEECSSSCEEEEEE---CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEE
T ss_pred cEE---EeeEeccCCCCcEEEEE---CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEE
Confidence 541 122211 2234556777 566665554 68999999997533221 1111 2468899
Q ss_pred EcCCce-EEEEEcCCCCeeEEEEecCCCe-------EE-----EEee-cCCcceeEEEEEecCCCEEEEEe-CCCcEEEE
Q 011452 241 ISPGIM-LLIFTKASGHVPLKILSIEDGT-------VL-----KSFN-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL 305 (485)
Q Consensus 241 fSpg~~-ll~sss~~~D~tIklWdi~tG~-------~L-----~tl~-~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW 305 (485)
|||++. ++++.. .+.+|++|++.... +. ..+. .+......++|+ |++..+++++ .+++|++|
T Consensus 162 ~spdg~~l~~~~~--~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s-pdg~~l~v~~~~~~~v~v~ 238 (361)
T 3scy_A 162 ITPDGKYLLADDL--GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN-SDGKFAYLINEIGGTVIAF 238 (361)
T ss_dssp ECTTSSEEEEEET--TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTCEEEEE
T ss_pred ECCCCCEEEEEeC--CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc-CCCCEEEEEcCCCCeEEEE
Confidence 999776 555543 34799999887543 21 1111 222445689996 7788887776 79999999
Q ss_pred ECCCCeeE--E---ecccCCCceEEEEEcCCCcEEEEEe-C--CcEEEEeCC---Cc--EEEEeecCCCCCCCCCeeEEE
Q 011452 306 DVRNFELT--E---VSRTEFMTPSAFIFLYENQLFLTFR-N--RTVAVWNFR---GE--LVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 306 Dv~tg~~~--~---~l~gh~~~v~avaFspdg~llaS~s-D--~TIklWd~~---G~--ll~tl~gH~~~~~~~~v~sva 372 (485)
|+.++++. . ....+...+..++|+|||++|+.+. + ++|.+|+++ |+ .+..+.. ... +..++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~-----~~~~~ 312 (361)
T 3scy_A 239 RYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIH-----PRNFI 312 (361)
T ss_dssp EEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSC-----CCEEE
T ss_pred EecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCC-----CceEE
Confidence 99988652 2 2344556788999999999886655 5 799999984 66 4555554 223 68999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEE--eCCCCeEEEE
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINIS--NILTGKCLAK 413 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklW--dl~TGk~l~t 413 (485)
|+|||++|+.++.+ +++|.+| |..+|++...
T Consensus 313 ~spdg~~l~~~~~~----------~~~v~v~~~d~~~g~~~~~ 345 (361)
T 3scy_A 313 ITPNGKYLLVACRD----------TNVIQIFERDQATGLLTDI 345 (361)
T ss_dssp ECTTSCEEEEEETT----------TTEEEEEEECTTTCCEEEC
T ss_pred ECCCCCEEEEEECC----------CCCEEEEEEECCCCcEeec
Confidence 99999999998852 6899995 6668887554
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1e-22 Score=200.88 Aligned_cols=258 Identities=10% Similarity=0.149 Sum_probs=178.1
Q ss_pred eEEEEeEe--ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC----CcEEEeecCC--CeE--EEEEc--CCc
Q 011452 168 RSTRIEYI--RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKN--YTM--LYSIS--DKN 235 (485)
Q Consensus 168 ~t~~lw~i--~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D----~tiKlWdl~~--g~~--l~tl~--~~~ 235 (485)
..+.+|.+ .+|++.. +... +...|..++|+ |||++|++++.| ++|.+|++.. |++ +..+. +..
T Consensus 27 ~~i~~~~~d~~~g~~~~---~~~~-~~~~p~~l~~s-pdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~ 101 (361)
T 3scy_A 27 KGIYTFRFNEETGESLP---LSDA-EVANPSYLIPS-ADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD 101 (361)
T ss_dssp CEEEEEEEETTTCCEEE---EEEE-ECSCCCSEEEC-TTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC
T ss_pred CCEEEEEEeCCCCCEEE---eecc-cCCCCceEEEC-CCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC
Confidence 57778876 5676522 2221 34567789998 799999988876 8999999865 653 34443 456
Q ss_pred EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee------c--------CCcceeEEEEEecCCCEEEEEe-CCC
Q 011452 236 VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN------H--------LLHRNKKVDFIEQFNEKLLVKQ-ENE 300 (485)
Q Consensus 236 V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~------~--------~~~~~~~V~f~~~~~~~lls~s-~D~ 300 (485)
...+++ ++..++++.. .+++|.+|++.++..+..+. + +..+...++|+ |++.++++++ .++
T Consensus 102 p~~~~~-dg~~l~~~~~--~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~ 177 (361)
T 3scy_A 102 PCYLTT-NGKNIVTANY--SGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRIT-PDGKYLLADDLGTD 177 (361)
T ss_dssp EEEEEE-CSSEEEEEET--TTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEEC-TTSSEEEEEETTTT
T ss_pred cEEEEE-CCCEEEEEEC--CCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEEC-CCCCEEEEEeCCCC
Confidence 788888 7776766643 34799999997554433221 1 12234679996 7788787775 689
Q ss_pred cEEEEECCCCe-------e------EEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcE--EEEeecCCCC
Q 011452 301 NLQILDVRNFE-------L------TEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GEL--VTSFEDHLLW 362 (485)
Q Consensus 301 tIkIWDv~tg~-------~------~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~l--l~tl~gH~~~ 362 (485)
+|++|++.... + ......+...+..++|+|||++|+.++ +++|.+||++ |++ +.++..+...
T Consensus 178 ~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~ 257 (361)
T 3scy_A 178 QIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVN 257 (361)
T ss_dssp EEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSC
T ss_pred EEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCC
Confidence 99999887533 2 122234456789999999999765554 8999999995 765 3444332211
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC--CCe--EEEEecCCCCCCCCcccccCCCCCCCCcc
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL--TGK--CLAKIRASNGLPAENECSCSGDYSSGSCN 438 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~--TGk--~l~tl~gH~~~~~~~~~~~~~~~~~~~~~ 438 (485)
......++|||||++|+.++. +.+++|.||++. +|+ .+..+.. .
T Consensus 258 --~~~~~~i~~spdg~~l~v~~~---------~~~~~i~v~~~~~~~g~~~~~~~~~~-g-------------------- 305 (361)
T 3scy_A 258 --AQGSGDIHLSPDGKYLYASNR---------LKADGVAIFKVDETNGTLTKVGYQLT-G-------------------- 305 (361)
T ss_dssp --CCCEEEEEECTTSSEEEEEEC---------SSSCEEEEEEECTTTCCEEEEEEEEC-S--------------------
T ss_pred --CCCcccEEECCCCCEEEEECC---------CCCCEEEEEEEcCCCCcEEEeeEecC-C--------------------
Confidence 011679999999999977664 014899999995 566 4444443 2
Q ss_pred ccccccccccccchhcccCCeEEEEEcCCCCEEEEec-CCCcEEEcc
Q 011452 439 VKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN-RHGLVHVWS 484 (485)
Q Consensus 439 ~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs-~DgtVklWd 484 (485)
..+.+++|+|||+.|+.++ .+++|++|+
T Consensus 306 ------------------~~~~~~~~spdg~~l~~~~~~~~~v~v~~ 334 (361)
T 3scy_A 306 ------------------IHPRNFIITPNGKYLLVACRDTNVIQIFE 334 (361)
T ss_dssp ------------------SCCCEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred ------------------CCCceEEECCCCCEEEEEECCCCCEEEEE
Confidence 1677899999999988887 679999974
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.2e-24 Score=208.89 Aligned_cols=317 Identities=9% Similarity=-0.008 Sum_probs=201.4
Q ss_pred eeecccCcEEEEeecCCc----ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 119 AFCRETNQRICFLNVTAD----EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 119 lW~~~tG~~l~tl~g~~~----~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
..|..+|+.+..|..... ..+.+++|||||+.|+.++..... ..+.+|++..|+.. .+... ....
T Consensus 14 ~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~-------~~l~~~d~~~~~~~---~l~~~-~~~~ 82 (396)
T 3c5m_A 14 FVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGN-------RNYYLLNLETQQAV---QLTEG-KGDN 82 (396)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSS-------CEEEEEETTTTEEE---ECCCS-SCBC
T ss_pred eecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCC-------ceEEEEECCCCcEE---EeecC-CCCc
Confidence 447788988888765211 126788999999999887643222 36678887777651 22221 1111
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--cCCcEEE-------------------EEEcCCceEEEEEc-
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQE-------------------IKISPGIMLLIFTK- 252 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~~~~V~~-------------------VafSpg~~ll~sss- 252 (485)
...+.|+ |||+.|++.+.++.|.+||+.+++..... +..+... ++++|++..++...
T Consensus 83 ~~~~~~s-pdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 83 TFGGFIS-TDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTTCEEC-TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred cccceEC-CCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 2236787 89999999999999999999998854433 3333333 34566444332211
Q ss_pred --CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeEEecccC-CCce
Q 011452 253 --ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNFELTEVSRTE-FMTP 323 (485)
Q Consensus 253 --~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D------~tIkIWDv~tg~~~~~l~gh-~~~v 323 (485)
...+..|.+||+.+|++..... +...+..++|++.++.+|+..+.+ ..|.+||+.+++......++ ...+
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~ 240 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQ-DTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESC 240 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEE-ESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEE
T ss_pred ccCCCcceEEEEECCCCcEEeecc-CCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccc
Confidence 1345799999999998766554 446678899973267777776533 46899999877765555422 3368
Q ss_pred EEEEEcCCCcEEEEEe-C-----CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC-CCCEEEEEecCCC---CC--
Q 011452 324 SAFIFLYENQLFLTFR-N-----RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS-DQDLIISYCKADS---DD-- 390 (485)
Q Consensus 324 ~avaFspdg~llaS~s-D-----~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~---~d-- 390 (485)
..++|+|||+.|+..+ + ++|.+||+. |+.... ..... .. ++|+| ||++|+.++.+.+ .|
T Consensus 241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l-~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~ 312 (396)
T 3c5m_A 241 THEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV-MVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADAD 312 (396)
T ss_dssp EEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE-EECCS------EE-EEEECSSSSEEEEEECCC--------
T ss_pred cceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe-eeCCC------CC-CCccCCCCceEEEecCCcceeecccc
Confidence 8899999999877775 4 459999996 665432 22211 33 89999 9999998653100 00
Q ss_pred CCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCE
Q 011452 391 PLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE 470 (485)
Q Consensus 391 ~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~ 470 (485)
......+..|.+||+.+|+. ..|..|...... .+.+ ....+.+++|+|||+.
T Consensus 313 ~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~-------------~~~~--------------~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 313 SYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV-------------LDGD--------------RQITHPHPSFTPNDDG 364 (396)
T ss_dssp --CCCCCCEEEEEETTTTBC-CEEEECCCCCCC-------------BTTB--------------SSTTCCCCEECTTSSE
T ss_pred ccccCCCCcEEEEecccCce-EEccCCCCcccc-------------cccc--------------ccCCCCCceEccCCCe
Confidence 00011357899999998875 456555410000 0000 0012456789999999
Q ss_pred EEEec-CCCcEEEcc
Q 011452 471 IYTGN-RHGLVHVWS 484 (485)
Q Consensus 471 LaSgs-~DgtVklWd 484 (485)
|+.++ .++...||.
T Consensus 365 l~~~s~~~~~~~l~~ 379 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYI 379 (396)
T ss_dssp EEEEECTTSSCEEEE
T ss_pred EEEEecCCCCceEEE
Confidence 88776 467777774
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=227.88 Aligned_cols=295 Identities=9% Similarity=0.041 Sum_probs=194.6
Q ss_pred ccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcc----cEEEEEEeeCCCEEEE
Q 011452 78 THDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----VIRSLFYNKNNDSLIT 153 (485)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~----~i~sv~~spdg~~Las 153 (485)
+|.++.....+.|. +++|++. ||+|++||..+|++...+.+.... ...+++|||||+.|++
T Consensus 14 ~~~~~~~~~~w~~d-------------g~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~ 78 (740)
T 4a5s_A 14 TYRLKLYSLRWISD-------------HEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILL 78 (740)
T ss_dssp CSCCCCCCEEECSS-------------SEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEE
T ss_pred cccccccccEECCC-------------CcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEE
Confidence 44455555555555 8888886 999999999999988777663222 2245889999999999
Q ss_pred EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-Ec
Q 011452 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS-IS 232 (485)
Q Consensus 154 ~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t-l~ 232 (485)
++.+...- .+=.-..+.|||+.+|++. +|.. +...+..++|| |||+.||+++ |+.|.+||+.+|++... ..
T Consensus 79 ~~~~~~~~-r~~~~~~~~~~d~~~~~~~---~l~~--~~~~~~~~~~S-PdG~~la~~~-~~~i~~~~~~~~~~~~lt~~ 150 (740)
T 4a5s_A 79 EYNYVKQW-RHSYTASYDIYDLNKRQLI---TEER--IPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWT 150 (740)
T ss_dssp EEEEEECS-SSCEEEEEEEEETTTTEEC---CSSC--CCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSC
T ss_pred EECCeeeE-EEccceEEEEEECCCCcEE---Eccc--CCCcceeeEEC-CCCCEEEEEE-CCeEEEEECCCCceEEEcCC
Confidence 88643211 1111246679999888862 2332 23456689998 8999999986 78999999998885432 22
Q ss_pred C--CcE-----------------EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEE
Q 011452 233 D--KNV-----------------QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (485)
Q Consensus 233 ~--~~V-----------------~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~l 293 (485)
+ ..+ .+++||||+..+++.+.+ +..+++|++...... .++......+.|. ..++.
T Consensus 151 g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d-~~~v~~~~~~~~~~~---~~~~~~~~~~~yp-~~G~~- 224 (740)
T 4a5s_A 151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN-DTEVPLIEYSFYSDE---SLQYPKTVRVPYP-KAGAV- 224 (740)
T ss_dssp CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE-CTTCCEEEEEECCST---TCSSCEEEEEECC-BTTSC-
T ss_pred CCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEc-ccCCceEEEEeecCC---CCCCCcceeecCC-CCcCc-
Confidence 2 123 248999988766665533 245888875211000 0133445566663 32321
Q ss_pred EEEeCCCcEEEEECCC---C---eeEEecc-----cCCCceEEEEEcCCCcEEEEEe-----CCcEEEEeCC-Cc----E
Q 011452 294 LVKQENENLQILDVRN---F---ELTEVSR-----TEFMTPSAFIFLYENQLFLTFR-----NRTVAVWNFR-GE----L 352 (485)
Q Consensus 294 ls~s~D~tIkIWDv~t---g---~~~~~l~-----gh~~~v~avaFspdg~llaS~s-----D~TIklWd~~-G~----l 352 (485)
..+.+|+|||+.+ + ++.+... +|...+..++|||||++++... +.+|.+||++ |+ |
T Consensus 225 ---~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~ 301 (740)
T 4a5s_A 225 ---NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNC 301 (740)
T ss_dssp ---CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEE
T ss_pred ---CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccce
Confidence 1223789999999 8 5555433 4888999999999999777654 2379999995 77 3
Q ss_pred E--EEe--ecCCCCCCCCCeeEEEECCCCCEEE-EEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 353 V--TSF--EDHLLWHPDCNTNNIYITSDQDLII-SYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 353 l--~tl--~gH~~~~~~~~v~svafSpDG~~La-S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
. .++ ++|..|.......+++|||||+.|+ ..+.. +....|.+||+.+|++.+
T Consensus 302 ~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~--------~G~~~l~~~~~~~~~~~~ 358 (740)
T 4a5s_A 302 LVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNE--------EGYRHICYFQIDKKDCTF 358 (740)
T ss_dssp CGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECT--------TSCEEEEEEETTCSSCEE
T ss_pred eEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcC--------CCceEEEEEECCCCceEe
Confidence 3 233 6788882100012789999999988 77641 123679999998777654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-22 Score=199.62 Aligned_cols=270 Identities=9% Similarity=0.023 Sum_probs=184.5
Q ss_pred EEEEEeCC--CeEEeeec--ccCcEEE--EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec-cCC
Q 011452 107 IVFALAQS--GVCAAFCR--ETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-RGK 179 (485)
Q Consensus 107 ~ias~s~d--gtiklW~~--~tG~~l~--tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-~G~ 179 (485)
.|+.+++. +.|.+|++ ++|++-. .........+..++|+|||+.|++++. + ++.+|++. +|+
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~----~-------~v~~~~~~~~g~ 72 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM----K-------KWSSFAVKSPTE 72 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB----T-------EEEEEEEEETTE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc----c-------eEEEEEECCCCC
Confidence 45566653 56777664 5676532 221112335788999999999988663 2 78899986 777
Q ss_pred cCcccceeeeccccCceEEEEeCCCCeE--EEEee-------------CCCcEEEeecC-CCeEEEEEc------CCcEE
Q 011452 180 PDAGFALFESESLKWPGFVEFDDVNGKV--LTYSA-------------QDSIYKVFDLK-NYTMLYSIS------DKNVQ 237 (485)
Q Consensus 180 ~~~~~~lf~~~~~~~~~~V~Fs~pnG~~--Las~s-------------~D~tiKlWdl~-~g~~l~tl~------~~~V~ 237 (485)
+. .+......+.+..++|+ |||+. |+++. .|+++++|++. +|++...+. ...+.
T Consensus 73 ~~---~~~~~~~~g~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~ 148 (365)
T 1jof_A 73 IV---HEASHPIGGHPRANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH 148 (365)
T ss_dssp EE---EEEEEECCSSGGGGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE
T ss_pred EE---EeeEeecCCCCccEEEC-CCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce
Confidence 62 12322111345578997 79994 55553 69999999997 577654432 35799
Q ss_pred EEEEcCCceEEEEEcCCCCeeEEEEecC-CCeEE--EEee--cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC--C
Q 011452 238 EIKISPGIMLLIFTKASGHVPLKILSIE-DGTVL--KSFN--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR--N 309 (485)
Q Consensus 238 ~VafSpg~~ll~sss~~~D~tIklWdi~-tG~~L--~tl~--~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~--t 309 (485)
+++|||++..+..+. ..+.+|++||+. +|++. ..+. .|......++|+ |++..|++++ .+++|++|++. +
T Consensus 149 ~~~~spdG~~l~~~~-~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 149 GMVFDPTETYLYSAD-LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEECTTSSEEEEEE-TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTT
T ss_pred EEEECCCCCEEEEEc-CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC-CCCCEEEEEECCCCeEEEEEEeCCC
Confidence 999999776444332 234699999998 88764 3443 134567789996 7788888876 57999999765 6
Q ss_pred CeeE------Eecc----cCCC------ceEEEE-EcCCCcEEEEEe--CC-----cEEEEeCC--CcEEE---EeecCC
Q 011452 310 FELT------EVSR----TEFM------TPSAFI-FLYENQLFLTFR--NR-----TVAVWNFR--GELVT---SFEDHL 360 (485)
Q Consensus 310 g~~~------~~l~----gh~~------~v~ava-Fspdg~llaS~s--D~-----TIklWd~~--G~ll~---tl~gH~ 360 (485)
|++. .++. +|.. .+.+++ |+|||++|+++. +. +|++|+++ |++.. .+..+.
T Consensus 227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~ 306 (365)
T 1jof_A 227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT 306 (365)
T ss_dssp CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC
Confidence 7653 2232 2332 589999 999999877665 33 89999983 77654 233343
Q ss_pred CCCCCCCeeEEEECC---CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 361 LWHPDCNTNNIYITS---DQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 361 ~~~~~~~v~svafSp---DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.. ...++|+| ||++|++++.+ +++|+||++..+
T Consensus 307 ~~-----~~~~a~sp~~~dg~~l~v~~~~----------~~~v~v~~~~~~ 342 (365)
T 1jof_A 307 SG-----GHSNAVSPCPWSDEWMAITDDQ----------EGWLEIYRWKDE 342 (365)
T ss_dssp CC-----TTCCCEEECTTCTTEEEEECSS----------SCEEEEEEEETT
T ss_pred CC-----cccceecCCCcCCCEEEEEEcC----------CCeEEEEEEchh
Confidence 33 56899999 89999998752 589999998766
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=8.5e-23 Score=204.11 Aligned_cols=245 Identities=11% Similarity=0.046 Sum_probs=171.9
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCeEEEEEc---CCcEEEEEEcCCce--EEEEEc-------CC----CC
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSIS---DKNVQEIKISPGIM--LLIFTK-------AS----GH 256 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~~l~tl~---~~~V~~VafSpg~~--ll~sss-------~~----~D 256 (485)
.+.+++|+ |||++|++++.+ +|.+||+. +|++..... ...+..++|||++. ++..+. .. .+
T Consensus 41 ~~~~~a~s-pdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 41 PISWMTFD-HERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCcEEEEC-CCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence 56789998 799999888888 99999997 888754432 12355689999777 333322 10 35
Q ss_pred eeEEEEecC-CCeEEEEeec----CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeeEE--ecc--cCCCceEE
Q 011452 257 VPLKILSIE-DGTVLKSFNH----LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NFELTE--VSR--TEFMTPSA 325 (485)
Q Consensus 257 ~tIklWdi~-tG~~L~tl~~----~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~-tg~~~~--~l~--gh~~~v~a 325 (485)
+++++|++. +|++..++.. +..+...++|+ |++.+|+++. .+++|++||+. +|++.. .+. .|...+..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~s-pdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~ 197 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRW 197 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEEC-CCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCE
Confidence 799999997 6887766542 44567899996 7788888775 57899999998 787643 232 24567999
Q ss_pred EEEcCCCcEEEEEe--CCcEEEEeCC---CcEEE---Eee-------cCCCC-CCCCCeeEEE-ECCCCCEEEEEecCCC
Q 011452 326 FIFLYENQLFLTFR--NRTVAVWNFR---GELVT---SFE-------DHLLW-HPDCNTNNIY-ITSDQDLIISYCKADS 388 (485)
Q Consensus 326 vaFspdg~llaS~s--D~TIklWd~~---G~ll~---tl~-------gH~~~-~~~~~v~sva-fSpDG~~LaS~s~d~~ 388 (485)
++|+|||++|+.++ +++|.+|+++ |++.. ++. +|... .+...+..++ |||||++|++++...
T Consensus 198 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~- 276 (365)
T 1jof_A 198 VAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN- 276 (365)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES-
T ss_pred eEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC-
Confidence 99999999887766 7899999763 77632 222 22210 0000278999 999999998776410
Q ss_pred CCCCCcCCCCeEEEEeCC-CCeEEEE---ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE
Q 011452 389 DDPLAEGNAGSINISNIL-TGKCLAK---IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY 464 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~-TGk~l~t---l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f 464 (485)
+ ....++|++|++. +|++... +..+. ..+.+++|
T Consensus 277 -~---~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--------------------------------------~~~~~~a~ 314 (365)
T 1jof_A 277 -K---FELQGYIAGFKLRDCGSIEKQLFLSPTPT--------------------------------------SGGHSNAV 314 (365)
T ss_dssp -S---TTSCCEEEEEEECTTSCEEEEEEEEECSS--------------------------------------CCTTCCCE
T ss_pred -C---CCCCCeEEEEEECCCCCEEEeeeeeecCC--------------------------------------CCccccee
Confidence 0 0001399999996 7886542 32332 14556899
Q ss_pred cC---CCCEEEEecCC-CcEEEcc
Q 011452 465 DE---DRNEIYTGNRH-GLVHVWS 484 (485)
Q Consensus 465 sp---Dg~~LaSgs~D-gtVklWd 484 (485)
+| ||+.||+++.+ ++|+||+
T Consensus 315 sp~~~dg~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 315 SPCPWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp EECTTCTTEEEEECSSSCEEEEEE
T ss_pred cCCCcCCCEEEEEEcCCCeEEEEE
Confidence 99 89999999875 9999997
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=233.34 Aligned_cols=213 Identities=9% Similarity=0.052 Sum_probs=155.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-----cE--EEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NV--QEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-----~V--~~Va 240 (485)
+.+.|+++..|.+ . .+...|+|+ |||++|+++ |++|++||+++|++...+.++ .+ .+++
T Consensus 3 ~~~tl~~~~~~~~-------~----~~~~~~~w~-~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTY-------R----LKLYSLRWI-SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCS-------C----CCCCCEEEC-SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCcc-------c----ccccccEEC-CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Confidence 3455666666643 1 123478998 799999986 999999999999987776542 12 4589
Q ss_pred EcCCceEEEEEcCCC-------CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 011452 241 ISPGIMLLIFTKASG-------HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT 313 (485)
Q Consensus 241 fSpg~~ll~sss~~~-------D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~ 313 (485)
|||++..+++++.+. ...+.|||+++|++. .+..|...+..++|+ |||.+|+.. .|++|.+||+.++++.
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~S-PdG~~la~~-~~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWS-PVGHKLAYV-WNNDIYVKIEPNLPSY 145 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEEC-SSTTCEEEE-ETTEEEEESSTTSCCE
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE-EcccCCCcceeeEEC-CCCCEEEEE-ECCeEEEEECCCCceE
Confidence 999777666554321 145679999999865 466677788999997 788888877 5789999999999876
Q ss_pred Eec-ccCCCce-----------------EEEEEcCCCcEEEEEe-CC---------------------------------
Q 011452 314 EVS-RTEFMTP-----------------SAFIFLYENQLFLTFR-NR--------------------------------- 341 (485)
Q Consensus 314 ~~l-~gh~~~v-----------------~avaFspdg~llaS~s-D~--------------------------------- 341 (485)
+.. .++...+ .+++|||||+.||..+ |.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 643 3443322 3589999999999987 43
Q ss_pred ---cEEEEeCCC---c---EEEEee------cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 342 ---TVAVWNFRG---E---LVTSFE------DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 342 ---TIklWd~~G---~---ll~tl~------gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+|.|||+++ . ....+. +|..+ +.+++|||||++++..... .+++.+|++||+.
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~wspdg~~~~~~~~r-------~~~~~~i~~~d~~ 293 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY-----LCDVTWATQERISLQWLRR-------IQNYSVMDICDYD 293 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE-----EEEEEEEETTEEEEEEEES-------STTEEEEEEEEEE
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE-----EEEEEEeCCCeEEEEEeCC-------CCCEEEEEEEECC
Confidence 478888855 3 333443 36655 8999999999988876541 2235689999999
Q ss_pred CCe
Q 011452 407 TGK 409 (485)
Q Consensus 407 TGk 409 (485)
||+
T Consensus 294 tg~ 296 (740)
T 4a5s_A 294 ESS 296 (740)
T ss_dssp TTT
T ss_pred CCc
Confidence 998
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-21 Score=184.26 Aligned_cols=235 Identities=10% Similarity=0.209 Sum_probs=186.0
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--------CcEEEEEEc-CCceEEEEEcCCCCeeEEE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKIS-PGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--------~~V~~VafS-pg~~ll~sss~~~D~tIkl 261 (485)
++..|..|+|+ ++|+++++.+.++.|++||.+ ++.+..+.. ..+..|+|+ +++.++++... .+..|++
T Consensus 28 ~~~~p~~v~~~-~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-~~~~i~~ 104 (286)
T 1q7f_A 28 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-PTHQIQI 104 (286)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-GGCEEEE
T ss_pred ccCCCceEEEC-CCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-CCCEEEE
Confidence 45678899998 799999998899999999986 677766632 468999995 78887777432 2479999
Q ss_pred EecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCCCcEEEEE
Q 011452 262 LSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 262 Wdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspdg~llaS~ 338 (485)
|| .+|+.+.++. .+......|+|. +++..+++...++.|.+||.. ++.+..+. ++...+..++|+|+|+++++.
T Consensus 105 ~d-~~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 105 YN-QYGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EC-TTSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EC-CCCcEEEEecCccCCCceEEEEe-CCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 99 6899998885 334567789886 556544444678999999975 56655553 566789999999999999998
Q ss_pred e-CCcEEEEeCCCcEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC-eEEEEeCCCCeEEEEe
Q 011452 339 R-NRTVAVWNFRGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG-SINISNILTGKCLAKI 414 (485)
Q Consensus 339 s-D~TIklWd~~G~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg-tIklWdl~TGk~l~tl 414 (485)
+ ++.|++||.+|+.+.++..+. .. ..+|+|+|||+++++... ++ .|.+|| .+|+.+.++
T Consensus 182 ~~~~~i~~~~~~g~~~~~~~~~g~~~~-----p~~i~~d~~G~l~v~~~~-----------~~~~i~~~~-~~g~~~~~~ 244 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH-----------NNFNLTIFT-QDGQLISAL 244 (286)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS-----------SSCEEEEEC-TTSCEEEEE
T ss_pred CCCCEEEEEcCCCCEEEEEccCCccCC-----CcEEEECCCCCEEEEeCC-----------CCEEEEEEC-CCCCEEEEE
Confidence 8 999999999999998886542 33 789999999999998765 45 999999 469999998
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..+.. ...+.+++|+|||+.+++ +.|++|++|+.
T Consensus 245 ~~~~~------------------------------------~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 245 ESKVK------------------------------------HAQCFDVALMDDGSVVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EESSC------------------------------------CSCEEEEEEETTTEEEEE-ETTTEEEEEEC
T ss_pred cccCC------------------------------------CCcceeEEECCCCcEEEE-CCCCeEEEEEc
Confidence 77642 015789999999998887 57999999973
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-22 Score=212.47 Aligned_cols=293 Identities=11% Similarity=-0.015 Sum_probs=195.3
Q ss_pred cccceEEEEEecCEEEEEe----CCCeEEeeecccCcEEEEeecCCcccEE---------EEEEe--eCCCE-EEEEEee
Q 011452 94 KRSKIIEIVAARDIVFALA----QSGVCAAFCRETNQRICFLNVTADEVIR---------SLFYN--KNNDS-LITVSVY 157 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s----~dgtiklW~~~tG~~l~tl~g~~~~~i~---------sv~~s--pdg~~-Las~S~d 157 (485)
+...|.+++++++.++-.+ .+++.+||.+..+.....|.. +...++ +.+++ |||+. |+.++.
T Consensus 22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~- 99 (662)
T 3azo_A 22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALP-APWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF- 99 (662)
T ss_dssp TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSC-TTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT-
T ss_pred cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCC-CCccccccccccCCccceeeeecCCCeEEEEEEC-
Confidence 3456888888866554444 488999999655666667766 444556 66565 99999 776441
Q ss_pred cCCCCcccceeEEEEeEec--c-CCcCcccceeeec---cccCceEEEEeCCCCeEEEEeeCC----------CcEEEee
Q 011452 158 ASDNFSSLRCRSTRIEYIR--R-GKPDAGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQD----------SIYKVFD 221 (485)
Q Consensus 158 ~~~d~stL~~~t~~lw~i~--~-G~~~~~~~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~D----------~tiKlWd 221 (485)
. + ..+.++++. . |+. .+|.... +...+..++|+ |||+.|++++.| .+|++||
T Consensus 100 ~--~------~~l~~~~~~~~g~~~~---~~l~~~~~~~~~~~~~~~~~s-pDg~~l~~~~~~~~~~~~~~~~~~i~~~~ 167 (662)
T 3azo_A 100 G--D------QRLYAFEPDAPGGAVP---RPLTPVSAVGGGLRWADPVLL-PERGEVWCMAEEFTGEGPSDVRRFLAAVP 167 (662)
T ss_dssp T--T------CCEEEECTTSTTCCCC---EECSCCCCSTTCEEEEEEEEE-TTTTEEEEEEEEECSSSTTCEEEEEEEEE
T ss_pred C--C------CeEEEEcCCCCCCCCC---EeccCCccCCCCccccCcEEC-CCCCEEEEEEecccCCCCCCceeEEEEEE
Confidence 1 2 234444433 1 443 2222211 12345578998 899999999887 6899999
Q ss_pred cCC------CeEEEEE-c-CCcEEEEEEcCCceEEEEEcCCC------CeeEEEEecC-CC---eEEEEeecCCcceeEE
Q 011452 222 LKN------YTMLYSI-S-DKNVQEIKISPGIMLLIFTKASG------HVPLKILSIE-DG---TVLKSFNHLLHRNKKV 283 (485)
Q Consensus 222 l~~------g~~l~tl-~-~~~V~~VafSpg~~ll~sss~~~------D~tIklWdi~-tG---~~L~tl~~~~~~~~~V 283 (485)
+.+ ++..... . ...+..++|||++..+++.+.+. ..+|.+||++ +| +......+|...+..+
T Consensus 168 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~ 247 (662)
T 3azo_A 168 LDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQA 247 (662)
T ss_dssp TTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEE
T ss_pred CCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcce
Confidence 988 6643222 2 34688899999776655544332 2689999999 68 5555555666788899
Q ss_pred EEEecCCCEEEEEeCCC--cEEEEECCCCeeEEecccCCCc--------eEEEEEcCCCcEEEEEeCCcEEEE--eCCCc
Q 011452 284 DFIEQFNEKLLVKQENE--NLQILDVRNFELTEVSRTEFMT--------PSAFIFLYENQLFLTFRNRTVAVW--NFRGE 351 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~--tIkIWDv~tg~~~~~l~gh~~~--------v~avaFspdg~llaS~sD~TIklW--d~~G~ 351 (485)
+|+ |++..++++..|+ +|.+||+.++++.+...+|... +..++|+|++++++++++++++|| |+++.
T Consensus 248 ~~s-pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 326 (662)
T 3azo_A 248 EWA-PDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESG 326 (662)
T ss_dssp EEC-TTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTT
T ss_pred EEC-CCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCC
Confidence 997 6777555556777 6666677788887776655443 568999999999998877899999 66656
Q ss_pred EEEEeecCCCCCCCCCeeEEEECCCCCEEE--EEecCCCCCCCCcCCCC--eEEEEeCCCCeEEEEecCCC
Q 011452 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLII--SYCKADSDDPLAEGNAG--SINISNILTGKCLAKIRASN 418 (485)
Q Consensus 352 ll~tl~gH~~~~~~~~v~svafSpDG~~La--S~s~d~~~d~~~~~~Dg--tIklWdl~TGk~l~tl~gH~ 418 (485)
.++.|..|... +..+. ++||+.++ +++. +. .|.+||+.+|++......|.
T Consensus 327 ~~~~l~~~~~~-----~~~~~-s~~~~~~~~~~~~~-----------~~~~~i~~~d~~~g~~~~l~~~~~ 380 (662)
T 3azo_A 327 ELVDAAGPWTE-----WAATL-TVSGTRAVGVAASP-----------RTAYEVVELDTVTGRARTIGARHT 380 (662)
T ss_dssp EEEECCSSCCE-----EEEEE-EEETTEEEEEEEET-----------TEEEEEEEEETTTCCEEEEESCCC
T ss_pred cEEEecCCCCe-----EEEEE-ecCCCEEEEEEcCC-----------CCCCEEEEEECCCCceEEeecCCc
Confidence 68889888654 66662 45555433 3332 33 56666777888655444543
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-21 Score=187.81 Aligned_cols=245 Identities=13% Similarity=0.084 Sum_probs=187.6
Q ss_pred ccCceEEEEeCCCCeEEEEeeCC------------------------CcEEEeecCCCeEEEEEcC---CcEEEEEEcCC
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQD------------------------SIYKVFDLKNYTMLYSISD---KNVQEIKISPG 244 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D------------------------~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg 244 (485)
+..+..|+|+ |+|+++++.+.+ ++|.+||.++|+++..+.. .....|+|+|+
T Consensus 23 l~~v~~va~d-~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 23 PGQVSGVALD-SKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp CSCEEEEEEC-TTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTT
T ss_pred cCCceEEEEC-CCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCC
Confidence 4567789998 799999998877 4799999999998877652 47899999997
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCe--EEEEe---------ecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCee
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGT--VLKSF---------NHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL 312 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~--~L~tl---------~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~ 312 (485)
+.++++... +..|++||. +|+ .+.++ .++......|+|.+.++..+++.+ .++.|++|| .+|+.
T Consensus 102 g~l~v~d~~--~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~ 177 (329)
T 3fvz_A 102 GNYWVTDVA--LHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKF 177 (329)
T ss_dssp SCEEEEETT--TTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCE
T ss_pred CCEEEEECC--CCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCE
Confidence 777777543 479999997 455 67777 344556778999632444445555 699999999 56777
Q ss_pred EEecc----------cCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 313 TEVSR----------TEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 313 ~~~l~----------gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
+..+. ++...+..++|+|+ |+++++.+ +++|++||.+ |+++.++...... ..+.+++|+| |..
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~---~~~~~~~~~p-g~~ 253 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFG---RNVFAISYIP-GFL 253 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTT---TCEEEEEEET-TEE
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccC---CCcceeeecC-CEE
Confidence 77763 34556999999999 89999988 9999999997 9999998643211 2278999999 555
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCe
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDI 459 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V 459 (485)
+++.+. .-.+.+.+.+|++||+.+|+++.++..... .+..+
T Consensus 254 ~~~~g~----~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~-----------------------------------~~~~p 294 (329)
T 3fvz_A 254 FAVNGK----PYFGDQEPVQGFVMNFSSGEIIDVFKPVRK-----------------------------------HFDMP 294 (329)
T ss_dssp EEEECC----CCTTCSCCCCEEEEETTTCCEEEEECCSSS-----------------------------------CCSSE
T ss_pred EEeCCC----EEeccCCCcEEEEEEcCCCeEEEEEcCCCC-----------------------------------ccCCe
Confidence 555432 223334567999999999999999852110 01378
Q ss_pred EEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 460 TALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 460 ~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+|+|+|||+.+++...++.|++|+
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEe
Confidence 8999999999999999999999997
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=196.33 Aligned_cols=273 Identities=10% Similarity=0.048 Sum_probs=184.4
Q ss_pred cCEEEEEeC-CCe--EEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 105 RDIVFALAQ-SGV--CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 105 ~~~ias~s~-dgt--iklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
|+.||.++. +|. +.+|++++|+......+ +...+.+++|||||+.|+.++. + +++.+|++..|+.
T Consensus 47 g~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~-~~~~~~~~~~spdg~~l~~~~~----~------~~l~~~d~~~g~~- 114 (388)
T 3pe7_A 47 GSKLLFGGAFDGPWNYYLLDLNTQVATQLTEG-RGDNTFGGFLSPDDDALFYVKD----G------RNLMRVDLATLEE- 114 (388)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTCEEEECCCS-SCBCSSSCEECTTSSEEEEEET----T------TEEEEEETTTCCE-
T ss_pred CCEEEEEEcCCCCceEEEEeCCCCceEEeeeC-CCCCccceEEcCCCCEEEEEeC----C------CeEEEEECCCCcc-
Confidence 898888887 775 77789888887764444 6656667899999999998773 3 5899999988876
Q ss_pred cccceeeeccccCceEE--EEeCCCCeEEEE----------------------eeCCCcEEEeecCCCeEEEEE-cCCcE
Q 011452 182 AGFALFESESLKWPGFV--EFDDVNGKVLTY----------------------SAQDSIYKVFDLKNYTMLYSI-SDKNV 236 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~~V--~Fs~pnG~~Las----------------------~s~D~tiKlWdl~~g~~l~tl-~~~~V 236 (485)
..++.. +..+.... .++ |||+.|+. ...+..|.+||+++|+..... ....+
T Consensus 115 --~~~~~~-~~~~~~~~~~~~~-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~ 190 (388)
T 3pe7_A 115 --NVVYQV-PAEWVGYGTWVAN-SDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWL 190 (388)
T ss_dssp --EEEEEC-CTTEEEEEEEEEC-TTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred --eeeeec-hhhcccccceeEC-CCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccc
Confidence 234443 22333222 345 79999874 235678999999999854433 34579
Q ss_pred EEEEEcC-CceEEEEEcCCC----CeeEEEEecCCCeEEEEeecCCc--ceeEEEEEecCCCEEEEEe-C-CC---cEEE
Q 011452 237 QEIKISP-GIMLLIFTKASG----HVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFNEKLLVKQ-E-NE---NLQI 304 (485)
Q Consensus 237 ~~VafSp-g~~ll~sss~~~----D~tIklWdi~tG~~L~tl~~~~~--~~~~V~f~~~~~~~lls~s-~-D~---tIkI 304 (485)
..++||| ++..+++.+... ...|.++|+.+++ ++.+..+.. .+..++|+ |++.+|+..+ . +. +|.+
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWV-PDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEEC-TTSSCEEEEEEETTCCCEEEEE
T ss_pred cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceEC-CCCCEEEEEecCCCCCcceEEE
Confidence 9999999 887666555432 3478888886654 455554332 45678886 7888887754 2 22 4999
Q ss_pred EECCCCeeEEe--cccCCCc---eEEEEEcCCCcEEEEE---------e-CCcEEEEeCCCcEEEEeecCCC-CC-----
Q 011452 305 LDVRNFELTEV--SRTEFMT---PSAFIFLYENQLFLTF---------R-NRTVAVWNFRGELVTSFEDHLL-WH----- 363 (485)
Q Consensus 305 WDv~tg~~~~~--l~gh~~~---v~avaFspdg~llaS~---------s-D~TIklWd~~G~ll~tl~gH~~-~~----- 363 (485)
||+.+++.... +.++... +..++|+|||+.|+.. . +..|.+||+++..++.+..|.. |.
T Consensus 269 ~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (388)
T 3pe7_A 269 ADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGD 348 (388)
T ss_dssp ECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTB
T ss_pred EecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccccCcccccccc
Confidence 99999985443 3331111 1123799999988853 4 6799999998555667777764 10
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
....+..++|||||++|+..+. .++...||.+
T Consensus 349 ~~~~~~~~~~spDg~~l~~~s~----------~~g~~~l~~~ 380 (388)
T 3pe7_A 349 RQVTHPHPSFTPDDKQILFTSD----------VHGKPALYLA 380 (388)
T ss_dssp SSTTCCCCEECTTSSEEEEEEC----------TTSSCEEEEE
T ss_pred cccCCCCccCCCCCCEEEEEec----------CCCceeEEEE
Confidence 0002678999999999998875 2577777754
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=9e-21 Score=191.62 Aligned_cols=279 Identities=11% Similarity=0.087 Sum_probs=191.2
Q ss_pred CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee--c
Q 011452 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--E 190 (485)
Q Consensus 113 ~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~--~ 190 (485)
.|+++.+||.++|+.+.++.. +..+ .++|||||+.|.+++...+.....=.-.++.+||+.+++..+..++-.. .
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 478999999999999998876 3434 8999999999998764211100000015899999888776432222100 0
Q ss_pred cccCceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCc-eEEEEEcCCCCeeEEEEecCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKNVQEIKISPGI-MLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~t-l~~~~V~~VafSpg~-~ll~sss~~~D~tIklWdi~t 266 (485)
...+|..++|+ |||++|..+.. +++|.|||+++++.+.+ +.....+.+.+.|.+ ..+++.+ .|+.+.+|++++
T Consensus 106 ~g~~p~~i~~s-pdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~--~dg~~~~v~~~~ 182 (361)
T 2oiz_A 106 GLNYDGLFRQT-TDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC--GDGGLLTINLGE 182 (361)
T ss_dssp BCCCGGGEEEC-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE--TTSSEEEEEECT
T ss_pred cCCCcceEEEC-CCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC--CCCcEEEEEECC
Confidence 12467789998 89999877753 68999999999999998 765455667788743 3333333 347888998865
Q ss_pred -CeEEEEe------ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee--EEecc------cCCC----ceEEEE
Q 011452 267 -GTVLKSF------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL--TEVSR------TEFM----TPSAFI 327 (485)
Q Consensus 267 -G~~L~tl------~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~--~~~l~------gh~~----~v~ava 327 (485)
|+++... ....+.+ .+.+. +++..++..+.+++|.++|+..+.. ..... .+.. ....++
T Consensus 183 ~g~~~~~~~~~~~~~~~~~~~-~~~~~-~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a 260 (361)
T 2oiz_A 183 DGKVASQSRSKQMFSVKDDPI-FIAPA-LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVG 260 (361)
T ss_dssp TSSEEEEEECCCCSCTTTSCB-CSCCE-ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEE
T ss_pred CCcEeeeccccceEcCCCCce-EEEec-ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEE
Confidence 7776322 1111111 22233 5567777777889999999986542 22110 0111 111278
Q ss_pred EcCCCcEEEEE-e-C----------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 328 FLYENQLFLTF-R-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 328 Fspdg~llaS~-s-D----------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
|+||++.+..+ . + .+|.+||+. ++.+.++..|. .++|+|||||++|++++
T Consensus 261 ~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-------p~~ia~spdg~~l~v~n---------- 323 (361)
T 2oiz_A 261 LHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-------ALSMTIDQQRNLMLTLD---------- 323 (361)
T ss_dssp EETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------CCEEEEETTTTEEEEEC----------
T ss_pred EecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------eeEEEECCCCCEEEEeC----------
Confidence 99996655543 3 2 389999996 99999999876 36999999999999875
Q ss_pred CCCCeEEEEeCCCC--eEEEEecCCC
Q 011452 395 GNAGSINISNILTG--KCLAKIRASN 418 (485)
Q Consensus 395 ~~DgtIklWdl~TG--k~l~tl~gH~ 418 (485)
+++|.+||..|| ++++++.++.
T Consensus 324 --~~~v~v~D~~t~~l~~~~~i~~~G 347 (361)
T 2oiz_A 324 --GGNVNVYDISQPEPKLLRTIEGAA 347 (361)
T ss_dssp --SSCEEEEECSSSSCEEEEEETTSC
T ss_pred --CCeEEEEECCCCcceeeEEeccCC
Confidence 389999999999 9999986654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.6e-22 Score=204.99 Aligned_cols=208 Identities=8% Similarity=0.042 Sum_probs=158.5
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCC-----------eEE-----EEEc-CCcEEEEEEcCCceEEEEE--cCCC
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-----------TML-----YSIS-DKNVQEIKISPGIMLLIFT--KASG 255 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g-----------~~l-----~tl~-~~~V~~VafSpg~~ll~ss--s~~~ 255 (485)
...++++ +++.+|+.++.|+ ++||+.... ... .+++ ...|.+|+|||++.+++.+ +.+.
T Consensus 39 ~n~lavs-~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~ 116 (434)
T 2oit_A 39 SSLLAVS-NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEY 116 (434)
T ss_dssp CBCEEEE-TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTT
T ss_pred ccEEEEe-cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCC
Confidence 3478998 6778888888887 999875311 111 1222 3469999999866665521 2456
Q ss_pred CeeEEEEecCCC--------e---EEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 256 HVPLKILSIEDG--------T---VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 256 D~tIklWdi~tG--------~---~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
|++|+|||++++ + .++.+.+|...+..|+|++..+..|++++.|++|+|||+++++++....+|...|.
T Consensus 117 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~ 196 (434)
T 2oit_A 117 GSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE
T ss_pred CceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee
Confidence 799999999876 2 35677788899999999844467888899999999999999988777778999999
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCC--CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP--DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~--~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
+++|+|+|++|++++ |++|++||.+|+...++..|...+. ...|.+++|++++.++++++..+... .....++
T Consensus 197 ~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~----~~~~~v~ 272 (434)
T 2oit_A 197 SVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL----ETSPDVV 272 (434)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS----SSCCEEE
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc----CCCCceE
Confidence 999999999999999 9999999999888888887754321 11389999999999999887521000 0113599
Q ss_pred EEeCCCC
Q 011452 402 ISNILTG 408 (485)
Q Consensus 402 lWdl~TG 408 (485)
+|++...
T Consensus 273 i~~l~~~ 279 (434)
T 2oit_A 273 MALLPKK 279 (434)
T ss_dssp EEECCCT
T ss_pred EEEeccC
Confidence 9999754
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=207.03 Aligned_cols=213 Identities=9% Similarity=-0.005 Sum_probs=158.6
Q ss_pred CcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCC----------eEEEEee-----cCCc
Q 011452 215 SIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG----------TVLKSFN-----HLLH 278 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG----------~~L~tl~-----~~~~ 278 (485)
+.||+|+... . +....++.+++|| ++.++++ .. |+ ++||+...- ..+..+. .|..
T Consensus 23 ~~vri~~~~~-~----~~~~~~n~lavs~~~~~l~~~-~~--dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (434)
T 2oit_A 23 KKVRIFDSPE-E----LPKERSSLLAVSNKYGLVFAG-GA--SG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKF 93 (434)
T ss_dssp CEEECSCCCS-S----CCCSCCBCEEEETTTTEEEEE-ET--TE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSS
T ss_pred eeEEecCCcc-c----cCCCCccEEEEecCCCEEEEE-CC--CE-EEEEEchHhhhhcccccCcccccccCccccccCCC
Confidence 5789987532 1 3345688899997 4555444 33 24 999875311 0111111 2345
Q ss_pred ceeEEEEEecCCCEEE----EEeCCCcEEEEECCCC--------e---eEEecccCCCceEEEEEcCC-CcEEEEEe-CC
Q 011452 279 RNKKVDFIEQFNEKLL----VKQENENLQILDVRNF--------E---LTEVSRTEFMTPSAFIFLYE-NQLFLTFR-NR 341 (485)
Q Consensus 279 ~~~~V~f~~~~~~~ll----s~s~D~tIkIWDv~tg--------~---~~~~l~gh~~~v~avaFspd-g~llaS~s-D~ 341 (485)
.+..|+|+ +++..|+ +++.|++|+|||++++ + .+..+.+|...|.+++|+|+ +++|||++ |+
T Consensus 94 ~v~~l~~s-pdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 94 PIHHLALS-CDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp CEEEEEEC-TTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred cccEEEEc-CCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 68899997 6788888 5679999999999765 1 25677889999999999998 89999999 99
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGL 420 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~ 420 (485)
+|+|||++ ++.+....+|... |.+++|+|||++||+|+. ||+|+|||+. ++...++..|...
T Consensus 173 ~v~iwD~~~~~~~~~~~~~~~~-----v~~v~wspdg~~lasgs~-----------dg~v~iwd~~-~~~~~~~~~~~~~ 235 (434)
T 2oit_A 173 SIAVLQVTETVKVCATLPSTVA-----VTSVCWSPKGKQLAVGKQ-----------NGTVVQYLPT-LQEKKVIPCPPFY 235 (434)
T ss_dssp CEEEEEESSSEEEEEEECGGGC-----EEEEEECTTSSCEEEEET-----------TSCEEEECTT-CCEEEEECCCTTC
T ss_pred eEEEEEcCCCcceeeccCCCCc-----eeEEEEcCCCCEEEEEcC-----------CCcEEEEccC-CcccccccCCccc
Confidence 99999996 8777778888766 999999999999999997 7999999998 8888888877520
Q ss_pred CCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEE-ecCCCc------EEEccC
Q 011452 421 PAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYT-GNRHGL------VHVWSN 485 (485)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaS-gs~Dgt------VklWd~ 485 (485)
. + .+...|.+++|+|++..+++ ++.||. +++|++
T Consensus 236 ~--------------------~-----------~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 236 E--------------------S-----------DHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp C--------------------T-----------TSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEEC
T ss_pred C--------------------C-----------CCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEe
Confidence 0 0 00027899999999998854 334533 889974
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-19 Score=177.09 Aligned_cols=271 Identities=11% Similarity=0.090 Sum_probs=186.7
Q ss_pred eEEEEEecCEEEEEe---------CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 98 IIEIVAARDIVFALA---------QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 98 V~~i~~s~~~ias~s---------~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
|.+..+.|+.||... .++.+.+|++++|+.. .| ..+.+++|||||+.||.++..+... -.
T Consensus 17 ~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-~l-----~~~~~~~~SpDg~~la~~~~~~~~~-----~~ 85 (347)
T 2gop_A 17 LSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR-FI-----ENATMPRISPDGKKIAFMRANEEKK-----VS 85 (347)
T ss_dssp EEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE-EE-----ESCEEEEECTTSSEEEEEEEETTTT-----EE
T ss_pred cccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceE-Ec-----ccCCCeEECCCCCEEEEEEeccCCC-----cc
Confidence 344444666666542 3678999999988754 34 3578999999999999988643211 13
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC---------------------------CcEEEee
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD---------------------------SIYKVFD 221 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D---------------------------~tiKlWd 221 (485)
.+.++++..|+. ..+.... . +..++|+ |||+.|++++.+ ..|.+||
T Consensus 86 ~l~~~~~~~g~~---~~l~~~~--~-~~~~~ws-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 86 EIWVADLETLSS---KKILEAK--N-IRSLEWN-EDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEEETTTTEE---EEEEEES--E-EEEEEEC-TTSSEEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred eEEEEECCCCce---EEEEcCC--C-ccceeEC-CCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 566777766665 2344432 2 6689998 799999998743 5799999
Q ss_pred cCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCC----e-eEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE
Q 011452 222 LKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGH----V-PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK 296 (485)
Q Consensus 222 l~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D----~-tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~ 296 (485)
+.+++.+..+....+..++|||++ ++.++..+.+ . ..+||.+.+|++ +.+..+ ..+..+ .|++.+|+..
T Consensus 159 ~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-~~~~~~---spdg~~l~~~ 232 (347)
T 2gop_A 159 TESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-VSFYAV---DSDGERILLY 232 (347)
T ss_dssp TTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-ESEEEE---EECSSCEEEE
T ss_pred CCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEeccC-cceeeE---CCCCCEEEEE
Confidence 999987443321278899999988 6655443321 2 345554446664 444433 333333 4788888887
Q ss_pred eCC--------CcEEEEECCCCeeEEecccCCCceEE-EEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCC
Q 011452 297 QEN--------ENLQILDVRNFELTEVSRTEFMTPSA-FIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPD 365 (485)
Q Consensus 297 s~D--------~tIkIWDv~tg~~~~~l~gh~~~v~a-vaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~ 365 (485)
+.+ ..|.+|| +++..+...+|...+.. ++|+ || ++++++ |++++|| ++ |++...+. +...
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~-~~~~--- 303 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAK-GRHW--- 303 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEEC-SSSE---
T ss_pred EccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEec-CCCe---
Confidence 633 4688888 78877777777788886 8999 98 888888 9999999 85 87755443 4434
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe-EEEEeCCCCeEEEEecCCC
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS-INISNILTGKCLAKIRASN 418 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt-IklWdl~TGk~l~tl~gH~ 418 (485)
|.+++|+| .++++++. +++ .+||.+. |+ +..|..|+
T Consensus 304 --v~~~~~s~--~~~~~~~~-----------~~~~~~l~~~~-g~-~~~lt~~n 340 (347)
T 2gop_A 304 --IMGFDVDE--IVVYLKET-----------ATRLRELFTWD-GE-EKQLTDYN 340 (347)
T ss_dssp --EEEEEESS--SEEEEEEC-----------SSSCCEEEEES-SS-EEECCCTT
T ss_pred --EEeeeeeC--cEEEEEcC-----------CCChHHheEeC-Cc-EEEecccc
Confidence 89999999 78888775 344 3788776 76 55688776
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-19 Score=174.83 Aligned_cols=266 Identities=11% Similarity=0.098 Sum_probs=183.4
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC--
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-- 214 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-- 214 (485)
..+.++.+ ||+.|+.+....... ..-....+.+|++..|+. ..+ ..+..++|+ |||+.||+.+.+
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~-~~~~~~~l~~~d~~~~~~---~~l------~~~~~~~~S-pDg~~la~~~~~~~ 81 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLK-DNKYENTIVIENLKNNAR---RFI------ENATMPRIS-PDGKKIAFMRANEE 81 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETT-TTEEEEEEEEEETTTCCE---EEE------ESCEEEEEC-TTSSEEEEEEEETT
T ss_pred EEcccceE--CCcEEEEEEeecCcc-cCCccceEEEEeCCCCce---EEc------ccCCCeEEC-CCCCEEEEEEeccC
Confidence 35777788 999998865432110 001125778888877765 122 345578998 899999998754
Q ss_pred -C--cEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCC-------------------------CCeeEEEEecCC
Q 011452 215 -S--IYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKAS-------------------------GHVPLKILSIED 266 (485)
Q Consensus 215 -~--tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~-------------------------~D~tIklWdi~t 266 (485)
+ .|.+||+.+++.........|..++|||++..+++.+.+ ....|.+||+.+
T Consensus 82 ~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~ 161 (347)
T 2gop_A 82 KKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES 161 (347)
T ss_dssp TTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred CCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence 2 377888988886544332229999999876544444321 136899999999
Q ss_pred CeEEEEeecCCcceeEEEEEecCCCEEEEEeCC------C-cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------E-NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 267 G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D------~-tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
|++++.+.. . .+..++|+ |++ .++++..+ . ..+||.+.++++..... + ..+.++ +|||+.|+..+
T Consensus 162 ~~~~~~l~~-~-~~~~~~~s-pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~-~-~~~~~~--spdg~~l~~~~ 233 (347)
T 2gop_A 162 EEVIEEFEK-P-RFSSGIWH-RDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFE-K-VSFYAV--DSDGERILLYG 233 (347)
T ss_dssp TEEEEEEEE-E-TTCEEEEE-TTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEE-E-ESEEEE--EECSSCEEEEE
T ss_pred CeEEeeecC-C-CcccccCC-CCe-EEEEEecccccccccccccEEEeCCCceEEecc-C-cceeeE--CCCCCEEEEEE
Confidence 988677765 3 67789997 666 55555543 2 55666555777655443 4 455554 99999988776
Q ss_pred -CC--------cEEEEeCCCcEEEEeecCCCCCCCCCeeE-EEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 340 -NR--------TVAVWNFRGELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 340 -D~--------TIklWd~~G~ll~tl~gH~~~~~~~~v~s-vafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
+. .|.+|| .|++...+.+|... +.+ ++|+ || ++++++. +++++|| +.+|+
T Consensus 234 ~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~-----~~~~~~~s-dg-~~~~~~~-----------~~~~~l~-~~~g~ 293 (347)
T 2gop_A 234 KPEKKYMSEHNKLYIYD-GKEVMGILDEVDRG-----VGQAKIKD-GK-VYFTLFE-----------EGSVNLY-IWDGE 293 (347)
T ss_dssp CCSSSCCCSSCEEEEEC-SSCEEESSTTCCSE-----EEEEEEET-TE-EEEEEEE-----------TTEEEEE-EESSS
T ss_pred ccccCCccccceEEEEC-CCceEeccccCCcc-----cCCccEEc-Cc-EEEEEec-----------CCcEEEE-EcCCc
Confidence 43 677888 77776655666544 776 9999 99 9998886 6899999 88888
Q ss_pred EEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE-EEcc
Q 011452 410 CLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV-HVWS 484 (485)
Q Consensus 410 ~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV-klWd 484 (485)
+...+ .+. ..|.+++|+| ..+++++.+++. +||.
T Consensus 294 ~~~~~-~~~--------------------------------------~~v~~~~~s~--~~~~~~~~~~~~~~l~~ 328 (347)
T 2gop_A 294 IKPIA-KGR--------------------------------------HWIMGFDVDE--IVVYLKETATRLRELFT 328 (347)
T ss_dssp EEEEE-CSS--------------------------------------SEEEEEEESS--SEEEEEECSSSCCEEEE
T ss_pred eEEEe-cCC--------------------------------------CeEEeeeeeC--cEEEEEcCCCChHHheE
Confidence 75544 333 2789999999 788888887765 7874
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-19 Score=168.61 Aligned_cols=237 Identities=11% Similarity=0.185 Sum_probs=178.8
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-----ccccCceEEEEeCCCCeEEEE
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-----ESLKWPGFVEFDDVNGKVLTY 210 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----~~~~~~~~V~Fs~pnG~~Las 210 (485)
-....+|+++|+|+.+++.+ .+ +.+.+|+. .|+.. ..|.. .++..|..++|++++|.++++
T Consensus 29 ~~~p~~v~~~~~g~l~v~~~----~~------~~i~~~d~-~g~~~---~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~ 94 (286)
T 1q7f_A 29 FTEPSGVAVNAQNDIIVADT----NN------HRIQIFDK-EGRFK---FQFGECGKRDSQLLYPNRVAVVRNSGDIIVT 94 (286)
T ss_dssp BSCEEEEEECTTCCEEEEEG----GG------TEEEEECT-TSCEE---EEECCBSSSTTCBSSEEEEEEETTTTEEEEE
T ss_pred cCCCceEEECCCCCEEEEEC----CC------CEEEEECC-CCcEE---EEecccCCCcccccCceEEEEEcCCCeEEEE
Confidence 34689999999999776633 23 47888985 46652 12221 234567789996579998888
Q ss_pred eeC-CCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEE
Q 011452 211 SAQ-DSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVD 284 (485)
Q Consensus 211 ~s~-D~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~ 284 (485)
... ++.|++|| .+++.+.++.. ..+..|+|+|++.++++... +..|.+||. +|+.+.++. ++......|+
T Consensus 95 ~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~ 170 (286)
T 1q7f_A 95 ERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECK--VMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVV 170 (286)
T ss_dssp ECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETT--TTEEEEECT-TSCEEEEEECTTTCSSEEEEE
T ss_pred cCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECC--CCEEEEEcC-CCCEEEEeCCCCccCCcEEEE
Confidence 754 89999999 67888777742 47899999997777776543 379999995 688888885 3445677899
Q ss_pred EEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEe-CC-cEEEEeCCCcEEEEeecCC
Q 011452 285 FIEQFNEKLLVKQENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFR-NR-TVAVWNFRGELVTSFEDHL 360 (485)
Q Consensus 285 f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~s-D~-TIklWd~~G~ll~tl~gH~ 360 (485)
|. +++..+++...++.|++||.. ++.+..+.. +...+..++|+|+|+++++.. ++ +|.+||.+|+.+.++..|.
T Consensus 171 ~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~ 248 (286)
T 1q7f_A 171 VN-DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKV 248 (286)
T ss_dssp EC-SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESS
T ss_pred EC-CCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccC
Confidence 86 445444444689999999985 566665543 457899999999999999998 75 9999999999999998765
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
.. ....+++|+|||+++++ +. |++|++|++..
T Consensus 249 ~~---~~~~~i~~~~~g~l~vs-~~-----------~~~v~v~~~~~ 280 (286)
T 1q7f_A 249 KH---AQCFDVALMDDGSVVLA-SK-----------DYRLYIYRYVQ 280 (286)
T ss_dssp CC---SCEEEEEEETTTEEEEE-ET-----------TTEEEEEECSC
T ss_pred CC---CcceeEEECCCCcEEEE-CC-----------CCeEEEEEccc
Confidence 32 12679999999998888 44 69999999764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-19 Score=176.51 Aligned_cols=239 Identities=9% Similarity=0.088 Sum_probs=185.7
Q ss_pred ccceEEEEEe--cCEEEEEeCC------------------------CeEEeeecccCcEEEEeecCCcccEEEEEEeeCC
Q 011452 95 RSKIIEIVAA--RDIVFALAQS------------------------GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN 148 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~d------------------------gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg 148 (485)
-..|..|+++ |+++++.+.+ +++.+||.++|+.+..+...+-.....|+++|+|
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3568899998 8899888888 5899999999999887654455578999999999
Q ss_pred CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee--------eccccCceEEEEeCCCCeEEEEee-CCCcEEE
Q 011452 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE--------SESLKWPGFVEFDDVNGKVLTYSA-QDSIYKV 219 (485)
Q Consensus 149 ~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~--------~~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKl 219 (485)
+.+++.+ .+ +.+.+|+. .|+... ...+. ...+..|..|+|++.+|.++++.+ .++.|++
T Consensus 103 ~l~v~d~----~~------~~v~~~~~-~g~~~~-~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~ 170 (329)
T 3fvz_A 103 NYWVTDV----AL------HQVFKLDP-HSKEGP-LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQ 170 (329)
T ss_dssp CEEEEET----TT------TEEEEECT-TCSSCC-SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEE
T ss_pred CEEEEEC----CC------CEEEEEeC-CCCeEE-EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEE
Confidence 9776532 23 48888984 665210 11121 234567889999833899999997 7999999
Q ss_pred eecCCCeEEEEEc--C----------CcEEEEEEcCC-ceEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEE
Q 011452 220 FDLKNYTMLYSIS--D----------KNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVD 284 (485)
Q Consensus 220 Wdl~~g~~l~tl~--~----------~~V~~VafSpg-~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~ 284 (485)
|| .+|+.+.++. + .....|+|+|+ +.++++... +..|++||.++|+.+.++. .+......++
T Consensus 171 ~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~--~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~ 247 (329)
T 3fvz_A 171 FS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE--NGRIQCFKTDTKEFVREIKHASFGRNVFAIS 247 (329)
T ss_dssp EC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT--TTEEEEEETTTCCEEEEECCTTTTTCEEEEE
T ss_pred Ec-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC--CCEEEEEECCCCcEEEEEeccccCCCcceee
Confidence 99 6788887774 1 23899999986 888887654 4799999999999999995 3445677888
Q ss_pred EEecCCCEEEEE-e-------CCCcEEEEECCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc
Q 011452 285 FIEQFNEKLLVK-Q-------ENENLQILDVRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 351 (485)
Q Consensus 285 f~~~~~~~lls~-s-------~D~tIkIWDv~tg~~~~~l---~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ 351 (485)
|. | +.++.. + .+.+|++||+.+|+++.++ .+|...+..++|+|||+++++.+ +++|++|+++|+
T Consensus 248 ~~-p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 248 YI-P--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EE-T--TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ec-C--CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 87 4 333332 2 4569999999999999987 47888999999999999999998 999999998653
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-19 Score=182.60 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=183.3
Q ss_pred eeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CCCcEEEeecCCCeEEEEEc----
Q 011452 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS---- 232 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D~tiKlWdl~~g~~l~tl~---- 232 (485)
-.++.+||..+|++.. .+..+ ..+ .++|+ |||++|..+. .|++|.+||+.+++.+.++.
T Consensus 30 d~~v~v~D~~t~~~~~---~i~~g--~~p-~i~~s-pdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~ 102 (361)
T 2oiz_A 30 ESRVHVYDYTNGKFLG---MVPTA--FNG-HVQVS-NDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK 102 (361)
T ss_dssp GCEEEEEETTTCCEEE---EEECC--EEE-EEEEC-TTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT
T ss_pred cCeEEEEECCCCeEEE---EecCC--CCC-ceEEC-CCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc
Confidence 3689999988888732 22222 234 89998 7999888775 37889999999999888774
Q ss_pred ----CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecCC-CEEEEEeCCCcEEEEE
Q 011452 233 ----DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILD 306 (485)
Q Consensus 233 ----~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~~-~~lls~s~D~tIkIWD 306 (485)
+.....++|||++..|..+....+.+|.+||+++++.+.+ +.. +....+.+. |++ ..+++.+.|+++.+|+
T Consensus 103 ~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~--~~~~~v~~~-p~~~~~~~~~~~dg~~~~v~ 179 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA--AGCWSVIPQ-PNRPRSFMTICGDGGLLTIN 179 (361)
T ss_dssp BCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG--TTEEEEEEC-TTSSSEEEEEETTSSEEEEE
T ss_pred ccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC--CCcceeEEc-CCCCeeEEEECCCCcEEEEE
Confidence 2346689999877655544433358999999999999998 663 223345554 444 4666678999999999
Q ss_pred CCC-CeeEE------ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc--EEEEee------cCCCCCCCCCee
Q 011452 307 VRN-FELTE------VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE--LVTSFE------DHLLWHPDCNTN 369 (485)
Q Consensus 307 v~t-g~~~~------~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~--ll~tl~------gH~~~~~~~~v~ 369 (485)
+.. ++... ++..+.. +..+.++|++..++..+ +++|.+||+. ++ .+.+++ .+..|.|.+ ..
T Consensus 180 ~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g-~~ 257 (361)
T 2oiz_A 180 LGEDGKVASQSRSKQMFSVKDD-PIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGG-YN 257 (361)
T ss_dssp ECTTSSEEEEEECCCCSCTTTS-CBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECC-SS
T ss_pred ECCCCcEeeeccccceEcCCCC-ceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCC-ee
Confidence 875 66552 2222222 22345688888888778 9999999996 33 233332 122232222 13
Q ss_pred EEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccc
Q 011452 370 NIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIR 449 (485)
Q Consensus 370 svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (485)
.++|+|||+.|..+......+......+++|.+||+.|++.++++..|.
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~------------------------------- 306 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD------------------------------- 306 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-------------------------------
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-------------------------------
Confidence 4899999888876643000000000024689999999999999998762
Q ss_pred cchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 450 STVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 450 ~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++++|+|||++||+++. ++|.|||.
T Consensus 307 ---------p~~ia~spdg~~l~v~n~-~~v~v~D~ 332 (361)
T 2oiz_A 307 ---------ALSMTIDQQRNLMLTLDG-GNVNVYDI 332 (361)
T ss_dssp ---------CCEEEEETTTTEEEEECS-SCEEEEEC
T ss_pred ---------eeEEEECCCCCEEEEeCC-CeEEEEEC
Confidence 568999999999999997 99999983
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=183.19 Aligned_cols=274 Identities=10% Similarity=0.062 Sum_probs=177.5
Q ss_pred cCEEEEEeCC---CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 105 RDIVFALAQS---GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 105 ~~~ias~s~d---gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
|+.||..+.. ..+.+|++.+|+... +...+......++|||||+.|+.++. + .++.+|++..|+.
T Consensus 47 G~~l~~~~~~~g~~~l~~~d~~~~~~~~-l~~~~~~~~~~~~~spdg~~l~~~~~----~------~~l~~~d~~~~~~- 114 (396)
T 3c5m_A 47 GKKLLFAGDFDGNRNYYLLNLETQQAVQ-LTEGKGDNTFGGFISTDERAFFYVKN----E------LNLMKVDLETLEE- 114 (396)
T ss_dssp SCEEEEEECTTSSCEEEEEETTTTEEEE-CCCSSCBCTTTCEECTTSSEEEEEET----T------TEEEEEETTTCCE-
T ss_pred CCEEEEEEecCCCceEEEEECCCCcEEE-eecCCCCccccceECCCCCEEEEEEc----C------CcEEEEECCCCCc-
Confidence 8887776543 367888998887654 44434333344889999999988773 2 3788999877775
Q ss_pred cccceeeeccccCceE-------------------EEEeCCCCeEEEEe-----eCCCcEEEeecCCCeEEEEEc-CCcE
Q 011452 182 AGFALFESESLKWPGF-------------------VEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYSIS-DKNV 236 (485)
Q Consensus 182 ~~~~lf~~~~~~~~~~-------------------V~Fs~pnG~~Las~-----s~D~tiKlWdl~~g~~l~tl~-~~~V 236 (485)
..++.. ...|... ++|+ |+|+.++.. ..+..|.+||+.+++...... ...+
T Consensus 115 --~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~ 190 (396)
T 3c5m_A 115 --QVIYTV-DEEWKGYGTWVANSDCTKLVGIEILKRDWQ-PLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWL 190 (396)
T ss_dssp --EEEEEC-CTTEEEEEEEEECTTSSEEEEEEEEGGGCC-CCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCE
T ss_pred --EEEEec-ccccCCCCCEEEeccCCccccccccccccC-CCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCccc
Confidence 223332 1122111 2345 677766654 467789999999988654443 4679
Q ss_pred EEEEEcC-CceEEEEEcCCCC----eeEEEEecCCCeEEEEeecCC--cceeEEEEEecCCCEEEEEeCC-----CcEEE
Q 011452 237 QEIKISP-GIMLLIFTKASGH----VPLKILSIEDGTVLKSFNHLL--HRNKKVDFIEQFNEKLLVKQEN-----ENLQI 304 (485)
Q Consensus 237 ~~VafSp-g~~ll~sss~~~D----~tIklWdi~tG~~L~tl~~~~--~~~~~V~f~~~~~~~lls~s~D-----~tIkI 304 (485)
..++||| ++..+++.+.+.. ..|.+||+.+++. +.+..+. ..+..++|+ |++.+|+..+.+ ++|.+
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWI-PDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEEC-TTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEEC-CCCCEEEEEecCCCCccceEEE
Confidence 9999999 6654444333333 5789999877654 3343321 245678886 788888876533 45999
Q ss_pred EECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe-----------------CCcEEEEeCC-CcEEEEeecCCC-CC-
Q 011452 305 LDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-----------------NRTVAVWNFR-GELVTSFEDHLL-WH- 363 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s-----------------D~TIklWd~~-G~ll~tl~gH~~-~~- 363 (485)
||+.+++........ ... ++|+| ||+++++++ +..|.+||+. |++ ..+..|.. +.
T Consensus 269 ~d~~~g~~~~l~~~~--~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~ 344 (396)
T 3c5m_A 269 ANPETLENEEVMVMP--PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-QKLCKHSTSWDV 344 (396)
T ss_dssp ECTTTCCEEEEEECC--SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC-CEEEECCCCCCC
T ss_pred EECCCCCeEEeeeCC--CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce-EEccCCCCcccc
Confidence 999999765543222 123 88999 999998753 3789999997 554 45665543 10
Q ss_pred ----CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE--eCCCCeE
Q 011452 364 ----PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS--NILTGKC 410 (485)
Q Consensus 364 ----~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW--dl~TGk~ 410 (485)
....+..++|+|||++|+..+.. ++...|| |+.++++
T Consensus 345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~----------~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 345 LDGDRQITHPHPSFTPNDDGVLFTSDF----------EGVPAIYIADVPESYK 387 (396)
T ss_dssp BTTBSSTTCCCCEECTTSSEEEEEECT----------TSSCEEEEEECCTTCC
T ss_pred ccccccCCCCCceEccCCCeEEEEecC----------CCCceEEEEEEccccc
Confidence 00014568999999999988752 3444444 5556554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2e-19 Score=191.74 Aligned_cols=285 Identities=7% Similarity=-0.026 Sum_probs=188.0
Q ss_pred eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCce---------EEEEe
Q 011452 131 LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---------FVEFD 201 (485)
Q Consensus 131 l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~---------~V~Fs 201 (485)
+.+ |...|.+++|++++ ++.++.....+ ++.+||....+... ..|... . ..+. .+.|+
T Consensus 19 ~~~-~~~~~~~~~~s~~~--~~~~~~~~~~~------~~~~l~~~~~~~~~--~~l~~~-~-~~~~~~~~~~~~~~~~~~ 85 (662)
T 3azo_A 19 VAS-RSGRPACVGAVGDE--VWWVAPRPAEA------GRATLVRRRADGAE--ESALPA-P-WNVRNRVFEYSGFPWAGV 85 (662)
T ss_dssp HHH-TCSCCEEEEEETTE--EEEEEEETTTT------TEEEEEEECTTSCE--EESSCT-T-CCBCCCGGGTCCCCEEEE
T ss_pred Hhh-cCCccceeEEcCCe--EEEEecCcccC------CcEEEEEECCCCCc--ceeCCC-C-ccccccccccCCccceee
Confidence 444 67789999999764 44444422334 47888886333210 112111 1 1111 34565
Q ss_pred C-CCCeE-EEEeeC-CCcEEEeecC--C-CeEEEEEcC-------CcEEEEEEcCCceEEEEEcCC--------CCeeEE
Q 011452 202 D-VNGKV-LTYSAQ-DSIYKVFDLK--N-YTMLYSISD-------KNVQEIKISPGIMLLIFTKAS--------GHVPLK 260 (485)
Q Consensus 202 ~-pnG~~-Las~s~-D~tiKlWdl~--~-g~~l~tl~~-------~~V~~VafSpg~~ll~sss~~--------~D~tIk 260 (485)
. |||+. |+.++. +..|.+|++. + ++ ...+.. ..+.+++|||++..+++.+.+ ...+|+
T Consensus 86 ~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 86 PRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred eecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 2 89998 887764 4555555654 2 43 344432 368899999977655554432 126899
Q ss_pred EEecCC------CeEEEEee-cCCcceeEEEEEecCCCEEEEEeCC--------CcEEEEECC-CC---eeEEecccCCC
Q 011452 261 ILSIED------GTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQEN--------ENLQILDVR-NF---ELTEVSRTEFM 321 (485)
Q Consensus 261 lWdi~t------G~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D--------~tIkIWDv~-tg---~~~~~l~gh~~ 321 (485)
+||+.+ |+. +.+. .+...+..++|+ |||.+|+..+.| .+|.+||+. +| +......+|..
T Consensus 165 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~S-pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~ 242 (662)
T 3azo_A 165 AVPLDGSAAADRSAV-RELSDDAHRFVTGPRLS-PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE 242 (662)
T ss_dssp EEETTSTTTTCGGGS-EESSCSCSSEECCCEEC-TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB
T ss_pred EEECCCCccccCCce-eEEEecCCCcccCceEC-CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc
Confidence 999988 664 4555 444667788996 789899887744 389999999 67 66666667778
Q ss_pred ceEEEEEcCCCcEEEEEe-CC--cEEEEeCC-CcEEEEeecCCC-----CCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 322 TPSAFIFLYENQLFLTFR-NR--TVAVWNFR-GELVTSFEDHLL-----WHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 322 ~v~avaFspdg~llaS~s-D~--TIklWd~~-G~ll~tl~gH~~-----~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
.+..++|+|||+++++++ |+ .|.+||+. |++...+.+|.. |.++ +..++|+|||+++++++
T Consensus 243 ~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~--~~~~~~~~~~~~~~~~~-------- 312 (662)
T 3azo_A 243 AIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPG--MRWFAPLANGLIAVVHG-------- 312 (662)
T ss_dssp CEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTT--CCSEEECTTSCEEEEEB--------
T ss_pred eEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCcccccc--CceEeEeCCCEEEEEEE--------
Confidence 999999999999888888 88 55566664 666554443322 3222 46799999999999875
Q ss_pred CcCCCCeEEEE--eCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE-EEcCCCC
Q 011452 393 AEGNAGSINIS--NILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL-FYDEDRN 469 (485)
Q Consensus 393 ~~~~DgtIklW--dl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl-~fspDg~ 469 (485)
. ++++|| |+.+|+ +.+|..|.. .|.++ ++++++-
T Consensus 313 ---~-~~~~l~~~d~~~~~-~~~l~~~~~--------------------------------------~~~~~~s~~~~~~ 349 (662)
T 3azo_A 313 ---K-GAAVLGILDPESGE-LVDAAGPWT--------------------------------------EWAATLTVSGTRA 349 (662)
T ss_dssp ---S-SSCEEEEEETTTTE-EEECCSSCC--------------------------------------EEEEEEEEETTEE
T ss_pred ---c-CccEEEEEECCCCc-EEEecCCCC--------------------------------------eEEEEEecCCCEE
Confidence 3 788999 766665 788887752 56666 6655555
Q ss_pred EEEEecCCCcEEEcc
Q 011452 470 EIYTGNRHGLVHVWS 484 (485)
Q Consensus 470 ~LaSgs~DgtVklWd 484 (485)
.+++++.+....||.
T Consensus 350 ~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 350 VGVAASPRTAYEVVE 364 (662)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEcCCCCCCEEEE
Confidence 566777777666663
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.7e-19 Score=192.77 Aligned_cols=283 Identities=10% Similarity=0.044 Sum_probs=196.6
Q ss_pred cCEEEEEeCCC---eEEeeecc--cCcEEEEee-----cCCcccEEEEEEeeCCCEEEEEEe-ecCCCCcccceeEEEEe
Q 011452 105 RDIVFALAQSG---VCAAFCRE--TNQRICFLN-----VTADEVIRSLFYNKNNDSLITVSV-YASDNFSSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ias~s~dg---tiklW~~~--tG~~l~tl~-----g~~~~~i~sv~~spdg~~Las~S~-d~~~d~stL~~~t~~lw 173 (485)
|+.++-...++ .-.||-+. .|+.-..+. ..|...+.+++|||||+.||.++. .|+++ .++++|
T Consensus 79 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~------~~i~v~ 152 (695)
T 2bkl_A 79 NGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADE------AVLHVI 152 (695)
T ss_dssp TTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSC------CEEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCce------EEEEEE
Confidence 77777777655 45667653 344222222 124457999999999999987655 34455 699999
Q ss_pred EeccCCcCcccceeeeccccCc--eEEEEeCCCCeEEEEeeCCCc-------------EEEeecCCCe----EEEEEcC-
Q 011452 174 YIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSI-------------YKVFDLKNYT----MLYSISD- 233 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~pnG~~Las~s~D~t-------------iKlWdl~~g~----~l~tl~~- 233 (485)
++.+|+... ...+.+. ..++|+ |||+.|++++.|.+ |++|++.+++ +++...+
T Consensus 153 dl~tg~~~~------~~~~~~~~~~~~~ws-pDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~ 225 (695)
T 2bkl_A 153 DVDSGEWSK------VDVIEGGKYATPKWT-PDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD 225 (695)
T ss_dssp ETTTCCBCS------SCCBSCCTTCCCEEC-TTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC
T ss_pred ECCCCCCcC------CcccCcccccceEEe-cCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC
Confidence 999888620 1112222 478998 79999999999887 9999999876 5555544
Q ss_pred -CcEEEEEEcCCceEEEEEcCC--CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe----CCCcEEEEE
Q 011452 234 -KNVQEIKISPGIMLLIFTKAS--GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ----ENENLQILD 306 (485)
Q Consensus 234 -~~V~~VafSpg~~ll~sss~~--~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s----~D~tIkIWD 306 (485)
..+.+++|||++..++..+.+ ....|.+|+..+|+ ++.+..+...+....+ ++++ +++.+ .++.|.+||
T Consensus 226 ~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~--~~g~-l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 226 PTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA--WKDR-FYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp TTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE--ETTE-EEEEECTTCTTCEEEEEB
T ss_pred CEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe--cCCc-EEEEECCCCCCCEEEEEe
Confidence 478999999866544443322 23578888877775 4555555555555555 4566 66654 368999999
Q ss_pred CCCCee---EEecccC-CCceEEEEEcCCCcEEEEEe-CCcEEEEeC--CCcEEEEeecC-CCCCCCCCeeEEEECCCCC
Q 011452 307 VRNFEL---TEVSRTE-FMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 307 v~tg~~---~~~l~gh-~~~v~avaFspdg~llaS~s-D~TIklWd~--~G~ll~tl~gH-~~~~~~~~v~svafSpDG~ 378 (485)
+.+++. ...+.++ ...+..++|+ +++++++.+ |++.+||.+ +|+.++.+..+ ... |..++++|||+
T Consensus 302 ~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d~~ 375 (695)
T 2bkl_A 302 PAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGA-----ASNLMGLEDLD 375 (695)
T ss_dssp TTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSE-----ECCCBSCTTCS
T ss_pred CCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeE-----EEEeecCCCCC
Confidence 998763 4444444 5568889998 888999998 999999876 48888888765 333 78899999998
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
.|+-...+ ....++|.+||+.+|+ +..|+.+.
T Consensus 376 ~l~~~~ss-------~~~P~~v~~~d~~~g~-~~~l~~~~ 407 (695)
T 2bkl_A 376 DAYYVFTS-------FTTPRQIYKTSVSTGK-SELWAKVD 407 (695)
T ss_dssp EEEEEEEE-------TTEEEEEEEEETTTCC-EEEEEECC
T ss_pred EEEEEEcC-------CCCCCEEEEEECCCCc-EEEEecCC
Confidence 77733221 1235899999999988 45666654
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-17 Score=182.22 Aligned_cols=257 Identities=12% Similarity=0.047 Sum_probs=184.1
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecC-CCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYAS-DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~-~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
+...+.+++|||||+.||.++..++ +. .++++|++.+|+... + ..... .+..++|+ |||+.|++++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~------~~i~v~d~~tg~~~~---~-~~~~~-~~~~~~ws-pDg~~l~~~~~ 190 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDW------VTIKFMKVDGAKELP---D-VLERV-KFSCMAWT-HDGKGMFYNAY 190 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSC------EEEEEEETTTTEEEE---E-EEEEE-CSCCEEEC-TTSSEEEEEEC
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCce------EEEEEEECCCCCCCc---c-cccCc-ccceEEEE-eCCCEEEEEEE
Confidence 4446899999999999998776433 33 489999998887622 1 11111 14579998 79999999998
Q ss_pred CCc----------------EEEeecCCCe----EEEEEcC--CcEEEEEEcCCceEEEEEcC-CC--CeeEEEEecCC--
Q 011452 214 DSI----------------YKVFDLKNYT----MLYSISD--KNVQEIKISPGIMLLIFTKA-SG--HVPLKILSIED-- 266 (485)
Q Consensus 214 D~t----------------iKlWdl~~g~----~l~tl~~--~~V~~VafSpg~~ll~sss~-~~--D~tIklWdi~t-- 266 (485)
|+. |++|++.+++ +++.... ..+..++|||++..++..+. +. +..|.+||+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 877 9999999876 4455433 35889999986654444332 22 57899999987
Q ss_pred ----Ce-EEEEeecCCcceeEEEEEecCCCEEEEEeC----CCcEEEEECCCCe--eEEecccCCC--ceEEEEEcCCCc
Q 011452 267 ----GT-VLKSFNHLLHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNFE--LTEVSRTEFM--TPSAFIFLYENQ 333 (485)
Q Consensus 267 ----G~-~L~tl~~~~~~~~~V~f~~~~~~~lls~s~----D~tIkIWDv~tg~--~~~~l~gh~~--~v~avaFspdg~ 333 (485)
|+ .++.+..+...+..+ |+ +++++|+..+. +..|.+||+.+++ ..+.+..|.. .+..++|++++.
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~~-~s-~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYDY-VT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cccCCccceEEeeCCCCcEEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 64 467777665555443 54 67888887653 3469999999875 2344444544 688899999999
Q ss_pred EEEEEe-CCc--EEEEeC-CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 334 LFLTFR-NRT--VAVWNF-RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 334 llaS~s-D~T--IklWd~-~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
++++.+ |+. |.+||+ +|++++.+..|... |.+++++||++.|+-...+ ....++|.+||+.+|+
T Consensus 349 lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~-----v~~~~~s~d~~~l~~~~ss-------~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLHDVKNTLQLHDLATGALLKIFPLEVGS-----VVGYSGQKKDTEIFYQFTS-------FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEEECCCSSE-----EEEEECCTTCSEEEEEEEC-------SSCCCEEEEEETTSSS
T ss_pred EEEEEEECCEEEEEEEECCCCCEEEecCCCCce-----EEEEecCCCCCEEEEEEeC-------CCCCCEEEEEECCCCc
Confidence 999998 885 556788 59988999887544 8899999999866633221 2346899999999998
Q ss_pred E-EEEecCC
Q 011452 410 C-LAKIRAS 417 (485)
Q Consensus 410 ~-l~tl~gH 417 (485)
+ +..++.+
T Consensus 417 ~~~~~l~~~ 425 (710)
T 2xdw_A 417 LEPRVFREV 425 (710)
T ss_dssp CCCEEEEEC
T ss_pred cceEEeeec
Confidence 5 5556554
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-18 Score=163.97 Aligned_cols=228 Identities=10% Similarity=0.070 Sum_probs=167.7
Q ss_pred cccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 191 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
...++..++|+ |+|+ +++++..++.|.+||..++...+..+...+..++|+|++.++++... +..|.+||.++|+.
T Consensus 26 ~~~~~eg~~~d-~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~--~~~i~~~d~~~g~~ 102 (296)
T 3e5z_A 26 GFTWTEGPVYV-PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHG--LRRLERQREPGGEW 102 (296)
T ss_dssp CCSSEEEEEEE-GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETT--TTEEEEECSTTCCE
T ss_pred CCccccCCeEe-CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecC--CCeEEEEcCCCCcE
Confidence 34567789998 6887 88888899999999999882223334567999999998877776543 36899999999987
Q ss_pred EEEeecC----CcceeEEEEEecCCCEEEEEeC-----------------CCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 270 LKSFNHL----LHRNKKVDFIEQFNEKLLVKQE-----------------NENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 270 L~tl~~~----~~~~~~V~f~~~~~~~lls~s~-----------------D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
...+... ......+++. ++|..+++.+. .+.|..+|.. ++. ..+..+...++.++|
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~d-~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~~~~~~gi~~ 179 (296)
T 3e5z_A 103 ESIADSFEGKKLNSPNDVCLA-PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRDRVKPNGLAF 179 (296)
T ss_dssp EEEECEETTEECCCCCCEEEC-TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECCCSSEEEEEE
T ss_pred EEEeeccCCCCCCCCCCEEEC-CCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecCCCCCccEEE
Confidence 5543321 1234578885 55655554221 2344445554 554 344567778999999
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC--CcE---EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR--GEL---VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~--G~l---l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+|||++|++.+ +++|.+||++ |++ ...+..+... ..+|+++|||+++++. . +.|.+
T Consensus 180 s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~~-~------------~~v~~ 241 (296)
T 3e5z_A 180 LPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGK-----TDGLRVDAGGLIWASA-G------------DGVHV 241 (296)
T ss_dssp CTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSC-----CCSEEEBTTSCEEEEE-T------------TEEEE
T ss_pred CCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCC-----CCeEEECCCCCEEEEc-C------------CeEEE
Confidence 99999997777 8999999984 776 4555333222 5689999999988876 2 78999
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE-cCCCCEEEEecCCCcEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY-DEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f-spDg~~LaSgs~DgtVk 481 (485)
||.. |+++.++..+. .+++++| +||++.|+.++.++.++
T Consensus 242 ~~~~-g~~~~~~~~~~---------------------------------------~~~~~~f~~~d~~~L~v~t~~~l~~ 281 (296)
T 3e5z_A 242 LTPD-GDELGRVLTPQ---------------------------------------TTSNLCFGGPEGRTLYMTVSTEFWS 281 (296)
T ss_dssp ECTT-SCEEEEEECSS---------------------------------------CCCEEEEESTTSCEEEEEETTEEEE
T ss_pred ECCC-CCEEEEEECCC---------------------------------------CceeEEEECCCCCEEEEEcCCeEEE
Confidence 9976 99999998765 3778999 69999999999988766
Q ss_pred E
Q 011452 482 V 482 (485)
Q Consensus 482 l 482 (485)
+
T Consensus 282 ~ 282 (296)
T 3e5z_A 282 I 282 (296)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=167.63 Aligned_cols=271 Identities=11% Similarity=0.112 Sum_probs=183.2
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
..|++|+|+|++..++..+. + ++++.| .++. ...+. ....++..++|+ ++|++++++..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~----~------~~~~~~---~~~~---~~~~~-~~~~~~~~~~~~-~~g~l~~~~~~~~~ 67 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIIS----E------SELQTI---TAEP---WLEIS-KKGLQLEGLNFD-RQGQLFLLDVFEGN 67 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCC----G------GGSCEE---ECEE---EEEEE-SSCCCEEEEEEC-TTSCEEEEETTTCE
T ss_pred cccceeeecCCccceeEEee----c------ccCccc---ccce---eEEEe-ccCccccCcEEC-CCCCEEEEECCCCE
Confidence 35788999999988766432 2 233344 1221 01111 234567789998 79999888889999
Q ss_pred EEEeecCCCeEEEEE--cCCcEEEEEEcCCceEEEEEcCC--CCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCC
Q 011452 217 YKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKAS--GHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFN 290 (485)
Q Consensus 217 iKlWdl~~g~~l~tl--~~~~V~~VafSpg~~ll~sss~~--~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~ 290 (485)
|.+||+++++..... ....+.+++++|++.++++...+ ....|.+||.++++....+. .+...+..++|. +++
T Consensus 68 i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d-~~g 146 (333)
T 2dg1_A 68 IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFD-SKG 146 (333)
T ss_dssp EEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEEC-TTS
T ss_pred EEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEEC-CCC
Confidence 999999998865443 35689999999987777765432 01589999999887654443 223456788886 555
Q ss_pred CEEEEEeC------CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeC--CCcEEEEe----
Q 011452 291 EKLLVKQE------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNF--RGELVTSF---- 356 (485)
Q Consensus 291 ~~lls~s~------D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~--~G~ll~tl---- 356 (485)
..+++... .+.|..+|..+++..... .+...+..++|+|||+ ++++.+ ++.|.+||+ +|+.+..+
T Consensus 147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~ 225 (333)
T 2dg1_A 147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATI 225 (333)
T ss_dssp CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEE
T ss_pred CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceE
Confidence 54444433 245556666666654443 3445689999999998 556666 899999999 46544332
Q ss_pred ----ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCC
Q 011452 357 ----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 357 ----~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
.++ . .+..++++|||+++++... ++.|.+||. +|+.+.++..+.. ..
T Consensus 226 ~~~~~~~-~-----~~~~i~~d~~G~l~v~~~~-----------~~~v~~~d~-~g~~~~~~~~~~~---------~~-- 276 (333)
T 2dg1_A 226 PYYFTGH-E-----GPDSCCIDSDDNLYVAMYG-----------QGRVLVFNK-RGYPIGQILIPGR---------DE-- 276 (333)
T ss_dssp EEECCSS-S-----EEEEEEEBTTCCEEEEEET-----------TTEEEEECT-TSCEEEEEECTTG---------GG--
T ss_pred EEecCCC-C-----CCCceEECCCCCEEEEEcC-----------CCEEEEECC-CCCEEEEEEcCCC---------cc--
Confidence 232 1 2688999999999988764 589999998 6888888865431 00
Q ss_pred CCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
-.+..+.+++|+|||+.|+.++.+
T Consensus 277 ---------------------g~~~~~~~~~~~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 277 ---------------------GHMLRSTHPQFIPGTNQLIICSND 300 (333)
T ss_dssp ---------------------TCSCBCCEEEECTTSCEEEEEEEC
T ss_pred ---------------------ccccCcceEEECCCCCEEEEEeCc
Confidence 000157889999999888766555
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=186.15 Aligned_cols=236 Identities=11% Similarity=0.054 Sum_probs=171.2
Q ss_pred ceEEEEeCCCCeEEEEeeCCC-----cEEEeecCCCeEEE-EEcCCcEEEEEEcCCceEEEEEcCCC-------------
Q 011452 195 PGFVEFDDVNGKVLTYSAQDS-----IYKVFDLKNYTMLY-SISDKNVQEIKISPGIMLLIFTKASG------------- 255 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~-----tiKlWdl~~g~~l~-tl~~~~V~~VafSpg~~ll~sss~~~------------- 255 (485)
+..++|| |||+.||+++.++ +|+|||+++|+.+. ++....+.+++|||++..+++++.+.
T Consensus 127 ~~~~~~S-PDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~ 205 (710)
T 2xdw_A 127 LRGYAFS-EDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN 205 (710)
T ss_dssp EEEEEEC-TTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred EEEEEEC-CCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence 4578998 8999999887544 99999999999765 34333467899998776555554432
Q ss_pred -CeeEEEEecCCCe----EEEEeecCCcceeEEEEEecCCCEEEEEeC-----CCcEEEEECCC------Ce-eEEeccc
Q 011452 256 -HVPLKILSIEDGT----VLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-----NENLQILDVRN------FE-LTEVSRT 318 (485)
Q Consensus 256 -D~tIklWdi~tG~----~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-----D~tIkIWDv~t------g~-~~~~l~g 318 (485)
...|++|++.+++ ++.....|......++|+ |++.+|+..+. +..|.+||+.+ ++ ..+.+..
T Consensus 206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~ 284 (710)
T 2xdw_A 206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID 284 (710)
T ss_dssp CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEc-CCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence 1239999999987 333333344456788886 78888888653 67899999987 53 3555666
Q ss_pred CCCceEEEEEcCCCcEEEEEe--CC---cEEEEeCC-Cc--EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC
Q 011452 319 EFMTPSAFIFLYENQLFLTFR--NR---TVAVWNFR-GE--LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD 390 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~s--D~---TIklWd~~-G~--ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d 390 (485)
|...+.. .|+|||+.|+..+ +. .|.+||+. ++ ..+++..|... ..+.+++|++++.+++++..
T Consensus 285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~lv~~~~~----- 355 (710)
T 2xdw_A 285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEK---DVLEWVACVRSNFLVLCYLH----- 355 (710)
T ss_dssp SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS---CEEEEEEEETTTEEEEEEEE-----
T ss_pred CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCC---CeEEEEEEEcCCEEEEEEEE-----
Confidence 7766665 4888888776555 32 69999996 53 34566666542 12788999999999999886
Q ss_pred CCCcCCCCe--EEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 391 PLAEGNAGS--INISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 391 ~~~~~~Dgt--IklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
|+. |.+||+.+|+++..|..|.. .|.+++++||+
T Consensus 356 ------~g~~~l~~~~~~~g~~~~~l~~~~~--------------------------------------~v~~~~~s~d~ 391 (710)
T 2xdw_A 356 ------DVKNTLQLHDLATGALLKIFPLEVG--------------------------------------SVVGYSGQKKD 391 (710)
T ss_dssp ------TTEEEEEEEETTTCCEEEEECCCSS--------------------------------------EEEEEECCTTC
T ss_pred ------CCEEEEEEEECCCCCEEEecCCCCc--------------------------------------eEEEEecCCCC
Confidence 564 66778778999999987742 78889999999
Q ss_pred CEEE----EecCCCcEEEccC
Q 011452 469 NEIY----TGNRHGLVHVWSN 485 (485)
Q Consensus 469 ~~La----Sgs~DgtVklWd~ 485 (485)
+.|+ |....++|.+||.
T Consensus 392 ~~l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 392 TEIFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp SEEEEEEECSSCCCEEEEEET
T ss_pred CEEEEEEeCCCCCCEEEEEEC
Confidence 8776 3335678888873
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=181.61 Aligned_cols=283 Identities=12% Similarity=0.070 Sum_probs=193.8
Q ss_pred cCEEEEEeCCCe---EEeeecc-----cCcEEEE-----eecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 105 RDIVFALAQSGV---CAAFCRE-----TNQRICF-----LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 105 ~~~ias~s~dgt---iklW~~~-----tG~~l~t-----l~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|++++-...++. -.||-+. .|+.-.- |...++..+.+++|||||+.||.++.+++.+ -.+++
T Consensus 118 G~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e-----~~~i~ 192 (741)
T 1yr2_A 118 GASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD-----WRTVK 192 (741)
T ss_dssp TTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS-----EEEEE
T ss_pred CCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc-----eEEEE
Confidence 788877776655 6777654 2332211 2222334789999999999999988664332 15799
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCc--------------EEEeecCCCe----EEEEEcC
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI--------------YKVFDLKNYT----MLYSISD 233 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t--------------iKlWdl~~g~----~l~tl~~ 233 (485)
+|++.+|+... . ..... ....++|+ || +.|++++.|.. |++|++.++. +++...+
T Consensus 193 v~dl~tg~~~~---~-~~~~~-~~~~~~ws-pD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~ 265 (741)
T 1yr2_A 193 FVGVADGKPLA---D-ELKWV-KFSGLAWL-GN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPE 265 (741)
T ss_dssp EEETTTCCEEE---E-EEEEE-ESCCCEES-TT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred EEECCCCCCCC---c-cCCCc-eeccEEEE-CC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCC
Confidence 99998888621 1 11111 12368898 78 99999988765 8999998775 4555444
Q ss_pred C--cEEEEEEcCCce-EEEEEcCC--CCeeEEEEecCCC--eEEEEeecCCcceeEEEEEecCCCEEEEEeC----CCcE
Q 011452 234 K--NVQEIKISPGIM-LLIFTKAS--GHVPLKILSIEDG--TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE----NENL 302 (485)
Q Consensus 234 ~--~V~~VafSpg~~-ll~sss~~--~D~tIklWdi~tG--~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~----D~tI 302 (485)
+ .+..+.|||++. +++++... ....|.+||+.+| ++++.+..+........+ ++++.|+..+. +..|
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~--~dg~~l~~~s~~~~~~~~l 343 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD--GVGDQLWFVSGDGAPLKKI 343 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE--EETTEEEEEECTTCTTCEE
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe--ccCCEEEEEECCCCCCCEE
Confidence 3 589999998775 44444322 2468999999988 425667655444444432 67888888764 4559
Q ss_pred EEEECCCC--eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC--CCcEEEEeecC-CCCCCCCCeeEEEECCC
Q 011452 303 QILDVRNF--ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF--RGELVTSFEDH-LLWHPDCNTNNIYITSD 376 (485)
Q Consensus 303 kIWDv~tg--~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~--~G~ll~tl~gH-~~~~~~~~v~svafSpD 376 (485)
.+||+.++ +...++.++...+..++|+ +++++++.. |++.+||.+ +|+.++.+..+ ... |..++++||
T Consensus 344 ~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~-----v~~~~~s~d 417 (741)
T 1yr2_A 344 VRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS-----ASGLSGRPG 417 (741)
T ss_dssp EEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE-----EEEEECCBT
T ss_pred EEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE-----EEEeecCCC
Confidence 99999984 5666666666677788887 778888888 999888865 58888888753 333 889999999
Q ss_pred CCEEE-EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 377 QDLII-SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 377 G~~La-S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
|+.|+ +++. ....++|.+||+.+|+ +..++.
T Consensus 418 ~~~l~~~~ss--------~~~P~~i~~~d~~tg~-~~~l~~ 449 (741)
T 1yr2_A 418 DRHAYLSFSS--------FTQPATVLALDPATAK-TTPWEP 449 (741)
T ss_dssp CSCEEEEEEE--------TTEEEEEEEEETTTTE-EEECSC
T ss_pred CCEEEEEEcC--------CCCCCEEEEEECCCCc-EEEEec
Confidence 98665 3332 1235899999999988 556654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=188.14 Aligned_cols=275 Identities=11% Similarity=0.073 Sum_probs=183.9
Q ss_pred eeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCCcCcccceeee-----ccccCceEEEEeCCCCeEEE-----Eee
Q 011452 145 NKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDAGFALFES-----ESLKWPGFVEFDDVNGKVLT-----YSA 212 (485)
Q Consensus 145 spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~~~~~~~lf~~-----~~~~~~~~V~Fs~pnG~~La-----s~s 212 (485)
+|+|+.|+.++.++... ...||-.. .|+. ..|+.. ++...+..++|| |||+.|| +|+
T Consensus 76 ~~dG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~---~~l~d~~~~a~~~~~~~~~~~~S-PDG~~la~~~~~~G~ 144 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKE-------KAILYWRQGESGQE---KVLLDPNGWSKDGTVSLGTWAVS-WDGKKVAFAQKPNAA 144 (695)
T ss_dssp EEETTEEEEEEECTTCS-------SCEEEEEESTTSCC---EEEECGGGSSSSSCEEEEEEEEC-TTSSEEEEEEEETTC
T ss_pred EEECCEEEEEEEcCCCe-------EEEEEEEcCCCCCc---EEEEchHHhccCCCEEEEEEEEC-CCCCEEEEEECCCCC
Confidence 37888888776544322 23344432 3332 223321 111235578998 8999999 455
Q ss_pred CCCcEEEeecCCCeEE-E-EEcCCcEEEEEEcCCceEEEEEcCCC-----------CeeEEEEecCCCe----EEEEeec
Q 011452 213 QDSIYKVFDLKNYTML-Y-SISDKNVQEIKISPGIMLLIFTKASG-----------HVPLKILSIEDGT----VLKSFNH 275 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l-~-tl~~~~V~~VafSpg~~ll~sss~~~-----------D~tIklWdi~tG~----~L~tl~~ 275 (485)
.+.+|+|||+++|+.+ . .+......+++|||++..+++++.+. ...|++|++.+|+ ++.....
T Consensus 145 ~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~ 224 (695)
T 2bkl_A 145 DEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG 224 (695)
T ss_dssp SCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC
T ss_pred ceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCC
Confidence 6789999999999864 2 12222226899999877666655432 1239999999887 4555555
Q ss_pred CCcceeEEEEEecCCCEEEEEeCCC----cEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcEEEEe
Q 011452 276 LLHRNKKVDFIEQFNEKLLVKQENE----NLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTVAVWN 347 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~s~D~----tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TIklWd 347 (485)
|...+..+.|+ |++.+|++.+.++ .|.+||..+++.... ..+...+...++ |+|++++++. ++.|.+||
T Consensus 225 ~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l-~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d 301 (695)
T 2bkl_A 225 DPTTFLQSDLS-RDGKYLFVYILRGWSENDVYWKRPGEKDFRLL-VKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVD 301 (695)
T ss_dssp CTTCEEEEEEC-TTSCCEEEEEEETTTEEEEEEECTTCSSCEEE-EECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEB
T ss_pred CCEEEEEEEEC-CCCCEEEEEEeCCCCceEEEEEcCCCCceEEe-ecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEe
Confidence 55567789986 7888888876555 677777766765444 456666777777 5666666554 37899999
Q ss_pred CC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CCeEEEEecCCCCCCCC
Q 011452 348 FR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL-TGKCLAKIRASNGLPAE 423 (485)
Q Consensus 348 ~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TGk~l~tl~gH~~~~~~ 423 (485)
++ ++. .+.+..|.. +..+.+++|+ ++++++++.. |++.+||.+. +|+++..+..+..
T Consensus 302 ~~~~~~~~~~~l~~~~~---~~~l~~~~~~-~~~lv~~~~~-----------dg~~~l~~~~~~g~~~~~l~~~~~---- 362 (695)
T 2bkl_A 302 PAKPARASWKEIVPEDS---SASLLSVSIV-GGHLSLEYLK-----------DATSEVRVATLKGKPVRTVQLPGV---- 362 (695)
T ss_dssp TTBCSGGGCEEEECCCS---SCEEEEEEEE-TTEEEEEEEE-----------TTEEEEEEEETTCCEEEECCCSSS----
T ss_pred CCCCCccCCeEEecCCC---CCeEEEEEEE-CCEEEEEEEE-----------CCEEEEEEEeCCCCeeEEecCCCC----
Confidence 96 653 234443321 1227889998 7889999887 7898888664 5888888876531
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE----EecCCCcEEEccC
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY----TGNRHGLVHVWSN 485 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La----Sgs~DgtVklWd~ 485 (485)
..|.+++++||++.|+ |...+++|.+||.
T Consensus 363 ---------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~ 395 (695)
T 2bkl_A 363 ---------------------------------GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV 395 (695)
T ss_dssp ---------------------------------SEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred ---------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 2677789999999888 6667789999973
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.2e-17 Score=157.36 Aligned_cols=266 Identities=8% Similarity=0.007 Sum_probs=185.3
Q ss_pred eEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 98 IIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 98 V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
|.++.|+ ...+++.+.+++++.| .++.+..+.. +...+.+++|+|+|+.+++.+ .+ ..+.+|+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~g~l~~~~~----~~------~~i~~~d~ 73 (333)
T 2dg1_A 8 LPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISK-KGLQLEGLNFDRQGQLFLLDV----FE------GNIFKINP 73 (333)
T ss_dssp CCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEES-SCCCEEEEEECTTSCEEEEET----TT------CEEEEECT
T ss_pred cceeeecCCccceeEEeecccCccc---ccceeEEEec-cCccccCcEECCCCCEEEEEC----CC------CEEEEEeC
Confidence 3334444 5667777889999999 3777777776 445689999999999766533 33 58889998
Q ss_pred ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC----CcEEEeecCCCeEEEEEc----CCcEEEEEEcCCceE
Q 011452 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD----SIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIML 247 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D----~tiKlWdl~~g~~l~tl~----~~~V~~VafSpg~~l 247 (485)
..|++. .++. .....+..++|+ ++|+++++...+ +.|.+||.++++....+. ...+.+++++|++.+
T Consensus 74 ~~~~~~---~~~~-~~~~~~~~i~~~-~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l 148 (333)
T 2dg1_A 74 ETKEIK---RPFV-SHKANPAAIKIH-KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGF 148 (333)
T ss_dssp TTCCEE---EEEE-CSSSSEEEEEEC-TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCE
T ss_pred CCCcEE---EEee-CCCCCcceEEEC-CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCE
Confidence 777752 1221 223457789998 799998887766 789999998887653332 357999999998777
Q ss_pred EEEEcCC----CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCC-CeeEE-------
Q 011452 248 LIFTKAS----GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-FELTE------- 314 (485)
Q Consensus 248 l~sss~~----~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t-g~~~~------- 314 (485)
+++.... ....|..+|.++++...... .......++|+ +++..|.++ +.++.|.+||+.+ ++.+.
T Consensus 149 ~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~i~~~-~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~ 226 (333)
T 2dg1_A 149 YFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALS-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 226 (333)
T ss_dssp EEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEEC-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEE
T ss_pred EEEeccccccCCCceEEEEeCCCCEEEEeec-CCCcccceEEC-CCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEE
Confidence 7765421 12456666666666543332 23456788886 667767665 5789999999964 43322
Q ss_pred -ecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCC-CCCeeEEEECCCCCEEEEEec
Q 011452 315 -VSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHP-DCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 315 -~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~-~~~v~svafSpDG~~LaS~s~ 385 (485)
.+.++ ..+..++++++|+++++.. ++.|.+||.+|+.+.++..+....- ...+.+++|+|||+.|..++.
T Consensus 227 ~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~ 299 (333)
T 2dg1_A 227 YYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 299 (333)
T ss_dssp EECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeC
Confidence 12233 4788999999999999888 8999999999998888865432000 001789999999877765543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=159.54 Aligned_cols=215 Identities=9% Similarity=0.015 Sum_probs=171.4
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-Ccc
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-LHR 279 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-~~~ 279 (485)
.|++|++++.|+.|.+||.++|+.+.++.. ..+.+++++|++.++++ .+..|..||. +|+.+.++..+ ...
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs----~~~~V~~~d~-~G~~~W~~~~~~~~~ 78 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS----YSKGAKMITR-DGRELWNIAAPAGCE 78 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE----CBSEEEEECT-TSCEEEEEECCTTCE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe----CCCCEEEECC-CCCEEEEEcCCCCcc
Confidence 378999999999999999999999998864 36899999998887774 2368999999 99999999854 245
Q ss_pred eeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEecc------cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCc
Q 011452 280 NKKVDFIEQFNEKLLVKQE-NENLQILDVRNFELTEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGE 351 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~-D~tIkIWDv~tg~~~~~l~------gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ 351 (485)
+.++.+. +++..+++.+. ++.|..+|. +|+.+..+. ++...+..++++++|+++++.. ++.|..||.+|+
T Consensus 79 ~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G~ 156 (276)
T 3no2_A 79 MQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNGQ 156 (276)
T ss_dssp EEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTSC
T ss_pred ccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCCC
Confidence 6778876 66777777666 788888886 577655542 3334567778999999999998 999999999999
Q ss_pred EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCC
Q 011452 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGD 431 (485)
Q Consensus 352 ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~ 431 (485)
++.++..+. + ..++.+.|+|++|++++. ++.|..+|..||+.+.++..+...
T Consensus 157 ~~w~~~~~~-~-----~~~~~~~~~g~~~v~~~~-----------~~~v~~~d~~tG~~~w~~~~~~~~----------- 208 (276)
T 3no2_A 157 LLNSVKLSG-T-----PFSSAFLDNGDCLVACGD-----------AHCFVQLNLESNRIVRRVNANDIE----------- 208 (276)
T ss_dssp EEEEEECSS-C-----CCEEEECTTSCEEEECBT-----------TSEEEEECTTTCCEEEEEEGGGSB-----------
T ss_pred EEEEEECCC-C-----ccceeEcCCCCEEEEeCC-----------CCeEEEEeCcCCcEEEEecCCCCC-----------
Confidence 999998753 2 567899999999998775 578999999999999999764310
Q ss_pred CCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 432 YSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
...+..+.+++..|+|+++++.
T Consensus 209 ---------------------~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 209 ---------------------GVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp ---------------------SCCCSEEEEEEECTTSCEEEEE
T ss_pred ---------------------CccccccccceEcCCCCEEEEe
Confidence 0012367888888888888887
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-16 Score=159.08 Aligned_cols=254 Identities=7% Similarity=0.018 Sum_probs=188.0
Q ss_pred eEEEEeEeccCCcCcccceeee---ccc-cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEc
Q 011452 168 RSTRIEYIRRGKPDAGFALFES---ESL-KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS 242 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~---~~~-~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafS 242 (485)
.++.++|..+|+.... ++.. ..+ ..+..+.++ ++++.+....+++|.+||.++++.+.++. ......|+|+
T Consensus 17 ~~l~~~d~~t~~~~~~--i~~~~n~~~lg~~~~~i~~~--~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 17 ATLSYYDPATCEVENE--VFYRANGFKLGDVAQSMVIR--DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp BEEEEEETTTTEEECS--HHHHHHSSCCBSCEEEEEEE--TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred ceEEEEECCCCEEhhh--hHhhhcCcccCccceEEEEE--CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 5788888877876321 1211 011 224568886 57888888889999999999999999886 4679999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-----cceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEe
Q 011452 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-----HRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEV 315 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-----~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~ 315 (485)
|++++.++.. .+.+|.+||++++++++++.... .....+++ ++++|.++. .+++|.++|+.+++.+..
T Consensus 93 ~~g~lyv~~~--~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~~~~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 93 SDEKAYVTQI--WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---YGKYVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp ETTEEEEEEB--SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---ETTEEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEEC--CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---ECCEEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 8778777753 34799999999999998887322 13456776 367887775 489999999999998887
Q ss_pred cccCCCceEEEEEcCCCcEEEEEe-C----------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~s-D----------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
+... ..+..++|+|||++++++. + ++|.++|.+ ++++.++.-.... ..+.++|+|||++|..+
T Consensus 168 i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~----~p~~la~~~d~~~lyv~ 242 (328)
T 3dsm_A 168 LTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGD----WPSEVQLNGTRDTLYWI 242 (328)
T ss_dssp EECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTC----CCEEEEECTTSCEEEEE
T ss_pred EEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCC----CceeEEEecCCCEEEEE
Confidence 7543 3578899999999999887 6 799999996 8888777532111 16899999999999875
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
. ++|.+||+.+++.+....... ......+++
T Consensus 243 ~-------------~~v~~~d~~t~~~~~~~~~~~------------------------------------~~~~p~gi~ 273 (328)
T 3dsm_A 243 N-------------NDIWRMPVEADRVPVRPFLEF------------------------------------RDTKYYGLT 273 (328)
T ss_dssp S-------------SSEEEEETTCSSCCSSCSBCC------------------------------------CSSCEEEEE
T ss_pred c-------------cEEEEEECCCCceeeeeeecC------------------------------------CCCceEEEE
Confidence 2 489999999887532100000 002678899
Q ss_pred EcC-CCCEEEEe----cCCCcEEEcc
Q 011452 464 YDE-DRNEIYTG----NRHGLVHVWS 484 (485)
Q Consensus 464 fsp-Dg~~LaSg----s~DgtVklWd 484 (485)
++| +|+..++. ..+++|.+||
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred EcCCCCeEEEEcccccccCCEEEEEC
Confidence 999 56666666 6789999997
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.6e-15 Score=138.11 Aligned_cols=269 Identities=10% Similarity=0.043 Sum_probs=190.8
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
+...+++|++.|+|..+++.. .. ..+..++.. |+.. .+.. .....+..++++ ++|.++++...
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~---~~-------~~v~~~d~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 76 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQH---KA-------NMISCINLD-GKIT----EYPLPTPDAKVMCLTIS-SDGEVWFTENA 76 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEET---TT-------TEEEEECTT-CCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred cCCCccceEECCCCCEEEEec---CC-------CcEEEEcCC-CCeE----EecCCcccCceeeEEEC-CCCCEEEeCCC
Confidence 445799999999999776522 12 367778855 6541 2221 123457789997 79999888777
Q ss_pred CCcEEEeecCCCeE-EEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecC
Q 011452 214 DSIYKVFDLKNYTM-LYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 214 D~tiKlWdl~~g~~-l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~ 289 (485)
++.|..||.+ ++. .+.+. ...+..|++.|++.+.++... +..|.+||. +|+.... +..+......+++. ++
T Consensus 77 ~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-~~ 151 (299)
T 2z2n_A 77 ANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMN--GNRIGRITD-DGKIREYELPNKGSYPSFITLG-SD 151 (299)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TT
T ss_pred CCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecC--CceEEEECC-CCCEEEecCCCCCCCCceEEEc-CC
Confidence 8999999986 443 33433 457999999997777776543 368999998 7776543 23334556788875 45
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEE-eecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~t-l~gH~~~~~~~ 366 (485)
+..+++...++.|..||. +++.... +..+...+..+++.++|+++++.. ++.|.+||.+|+.... +..+...
T Consensus 152 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~---- 226 (299)
T 2z2n_A 152 NALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNAR---- 226 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC----
T ss_pred CCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECCCCcEEEEECCCCCCC----
Confidence 544444457899999999 7776654 444566799999999999999887 8999999997775432 2323222
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec--CCCCCCCCcccccCCCCCCCCcccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR--ASNGLPAENECSCSGDYSSGSCNVKKHSH 444 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~--gH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (485)
+.+|+++|+|++.++... ++.|..||. +|+.. .+. .+.
T Consensus 227 -~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~-~~~~~~~~-------------------------- 266 (299)
T 2z2n_A 227 -PHAITAGAGIDLWFTEWG-----------ANKIGRLTS-NNIIE-EYPIQIKS-------------------------- 266 (299)
T ss_dssp -EEEEEECSTTCEEEEETT-----------TTEEEEEET-TTEEE-EEECSSSS--------------------------
T ss_pred -ceeEEECCCCCEEEeccC-----------CceEEEECC-CCceE-EEeCCCCC--------------------------
Confidence 889999999998887643 589999998 57543 332 221
Q ss_pred ccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 445 ASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 445 ~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
..+.++++ ++|+..++.+.++.+++
T Consensus 267 ------------~~~~~i~~-~~g~l~v~~~~~~l~~~ 291 (299)
T 2z2n_A 267 ------------AEPHGICF-DGETIWFAMECDKIGKL 291 (299)
T ss_dssp ------------CCEEEEEE-CSSCEEEEETTTEEEEE
T ss_pred ------------CccceEEe-cCCCEEEEecCCcEEEE
Confidence 27889999 99999888776666665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-16 Score=155.42 Aligned_cols=268 Identities=10% Similarity=0.061 Sum_probs=189.4
Q ss_pred CCCeEEeeecccCcEEEEeec----C-CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee
Q 011452 113 QSGVCAAFCRETNQRICFLNV----T-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (485)
Q Consensus 113 ~dgtiklW~~~tG~~l~tl~g----~-~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf 187 (485)
.++++.++|.+||+...++.. . .....+.+++. +++..++.. .. .++.++|..+|+... .+
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~---~~-------~~v~viD~~t~~~~~---~i 80 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVN---NS-------HVIFAIDINTFKEVG---RI 80 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEG---GG-------TEEEEEETTTCCEEE---EE
T ss_pred CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEc---CC-------CEEEEEECcccEEEE---Ec
Confidence 489999999999998776521 1 11346788884 344444322 12 489999998888732 12
Q ss_pred eeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CC------cEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK------NVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 188 ~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~------~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
. ....|..++|+ ++|++.++...+++|.+||+++++.+.++. +. ....|++ +++.+.++... .+.+|.
T Consensus 81 ~--~~~~p~~i~~~-~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~-~~~~v~ 155 (328)
T 3dsm_A 81 T--GFTSPRYIHFL-SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWS-YQNRIL 155 (328)
T ss_dssp E--CCSSEEEEEEE-ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECT-TCCEEE
T ss_pred C--CCCCCcEEEEe-CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCC-CCCEEE
Confidence 2 34678899997 688888877689999999999999887775 34 6677888 67777766431 247999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CC----------CcEEEEECCCCeeEEecccC-CCceEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN----------ENLQILDVRNFELTEVSRTE-FMTPSAFIF 328 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D----------~tIkIWDv~tg~~~~~l~gh-~~~v~avaF 328 (485)
++|++++++++++... .....+++. +++ ++.++. .+ ++|.++|.++++..+.+.-. ...++.++|
T Consensus 156 viD~~t~~~~~~i~~g-~~p~~i~~~-~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~ 232 (328)
T 3dsm_A 156 KIDTETDKVVDELTIG-IQPTSLVMD-KYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQL 232 (328)
T ss_dssp EEETTTTEEEEEEECS-SCBCCCEEC-TTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEE
T ss_pred EEECCCCeEEEEEEcC-CCccceEEc-CCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEE
Confidence 9999999999988742 233567775 555 455543 33 79999999999988765422 247999999
Q ss_pred cCCCcEEEEEeCCcEEEEeCC-CcEEEE--eecCCCCCCCCCeeEEEECC-CCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 329 LYENQLFLTFRNRTVAVWNFR-GELVTS--FEDHLLWHPDCNTNNIYITS-DQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 329 spdg~llaS~sD~TIklWd~~-G~ll~t--l~gH~~~~~~~~v~svafSp-DG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+||+++|..+. ++|.+||.. +++... +..+.. ....|+++| +|.+.++...+ -..+++|.+||
T Consensus 233 ~~d~~~lyv~~-~~v~~~d~~t~~~~~~~~~~~~~~-----~p~gi~vdp~~g~lyva~~~~-------y~~~~~V~v~d 299 (328)
T 3dsm_A 233 NGTRDTLYWIN-NDIWRMPVEADRVPVRPFLEFRDT-----KYYGLTVNPNNGEVYVADAID-------YQQQGIVYRYS 299 (328)
T ss_dssp CTTSCEEEEES-SSEEEEETTCSSCCSSCSBCCCSS-----CEEEEEECTTTCCEEEEECTT-------SSSEEEEEEEC
T ss_pred ecCCCEEEEEc-cEEEEEECCCCceeeeeeecCCCC-----ceEEEEEcCCCCeEEEEcccc-------cccCCEEEEEC
Confidence 99988776543 499999996 775321 221111 268999999 67777775110 01268999999
Q ss_pred CCCCeEEEEecC
Q 011452 405 ILTGKCLAKIRA 416 (485)
Q Consensus 405 l~TGk~l~tl~g 416 (485)
.. |+.++++.-
T Consensus 300 ~~-g~~~~~i~~ 310 (328)
T 3dsm_A 300 PQ-GKLIDEFYV 310 (328)
T ss_dssp TT-CCEEEEEEE
T ss_pred CC-CCEEEEEEe
Confidence 88 999999864
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-15 Score=160.45 Aligned_cols=320 Identities=12% Similarity=0.053 Sum_probs=217.7
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCCcCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGKPDA 182 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~~~~ 182 (485)
+.++++...++++.++|..|++.+.++..+. .+..+.|||||++|.+++. + ..+.++|+. +++..
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~~----d------g~V~viD~~~~t~~~v- 233 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGR----D------GKVNMIDLWMKEPTTV- 233 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEET----T------SEEEEEETTSSSCCEE-
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEcC----C------CeEEEEECCCCCCcEe-
Confidence 5677888899999999999999999887633 4779999999999987662 3 378899985 66542
Q ss_pred ccceeeeccccCceEEEEeC---CCCeEEEEee-CCCcEEEeecCCCeEEEEEcC------------C-cEEEEEEcCC-
Q 011452 183 GFALFESESLKWPGFVEFDD---VNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD------------K-NVQEIKISPG- 244 (485)
Q Consensus 183 ~~~lf~~~~~~~~~~V~Fs~---pnG~~Las~s-~D~tiKlWdl~~g~~l~tl~~------------~-~V~~VafSpg- 244 (485)
.+...-..+..++|++ |||++|..+. .+++|.|+|..+.+.+.++.. . .|..|.+|++
T Consensus 234 ----~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~ 309 (567)
T 1qks_A 234 ----AEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYR 309 (567)
T ss_dssp ----EEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSS
T ss_pred ----EEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCC
Confidence 1211123467899985 6998776655 569999999999999888751 1 5889999975
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEeccc----
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRT---- 318 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~g---- 318 (485)
..++... ...+.|.++|..+.+.++.-. ........+.|. +++.+++++. .+++|.++|+.+++++..+.-
T Consensus 310 ~~~vv~~--~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~-pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 310 PEFIVNV--KETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SEEEEEE--TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CEEEEEe--cCCCeEEEEecCCCccceeeeeeccccccCceEC-CCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 4444443 334799999988765444322 112334467775 7888888864 789999999999998766533
Q ss_pred -CCCceEEEEEcCC-CcEEEEEe--CCcEEEEeCC--------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 319 -EFMTPSAFIFLYE-NQLFLTFR--NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 319 -h~~~v~avaFspd-g~llaS~s--D~TIklWd~~--------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
|...--.+ |.|+ |.+++++. +++|.++|.+ .+.++++...... -.-|.++||+++|-....-
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g-----~~~i~~~p~~~~l~v~~~~ 460 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG-----SLFIKTHPNSQYLYVDATL 460 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC-----CCCEECCTTCSEEEEECTT
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCC-----CEEEEeCCCCCeEEEecCC
Confidence 33222223 6887 66777775 7999999985 4688888865321 1347889999988875420
Q ss_pred CCCCCCCcCCCCeEEEEeCCCC------eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 387 DSDDPLAEGNAGSINISNILTG------KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TG------k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
.++ ....++|-++|+.+. +++..+.--+ .+.+++.-..+.
T Consensus 461 ~~~----~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~------------------------------~~~~~~~~~~~~ 506 (567)
T 1qks_A 461 NPE----AEISGSVAVFDIKAMTGDGSDPEFKTLPIAE------------------------------WAGITEGQPRVV 506 (567)
T ss_dssp CSS----HHHHTCEEEEEGGGCCCSSSCCCEEEECHHH------------------------------HHTCCSSCCEEE
T ss_pred CCC----cccCceEEEEECCcccccccCCCcEEecccc------------------------------ccccCCCCcceE
Confidence 000 000369999999876 1223332000 000000012788
Q ss_pred EEEEcCCCCEEEEecC-----CCcEEEcc
Q 011452 461 ALFYDEDRNEIYTGNR-----HGLVHVWS 484 (485)
Q Consensus 461 sl~fspDg~~LaSgs~-----DgtVklWd 484 (485)
.+.|+|||++|+.+.+ ++.|-|.|
T Consensus 507 ~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 507 QGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp EEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred eeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 8999999999887743 68887765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.2e-17 Score=176.60 Aligned_cols=274 Identities=10% Similarity=0.057 Sum_probs=181.0
Q ss_pred eeCCCEEEEEEeecCCCCcccceeEEEEeEec-----cCCcCcccceeee-----ccccCceEEEEeCCCCeEEEEeeCC
Q 011452 145 NKNNDSLITVSVYASDNFSSLRCRSTRIEYIR-----RGKPDAGFALFES-----ESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 145 spdg~~Las~S~d~~~d~stL~~~t~~lw~i~-----~G~~~~~~~lf~~-----~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
+|||+.++..+.++..+ ...||-.. .|+. ..|+.. ++...+..++|| |||+.||+++.+
T Consensus 115 ~pdG~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~---~~lld~~~l~~~~~~~~~~~~~S-PDG~~la~~~~~ 183 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMN-------QSQLLVRPADAPVGTKG---RVLLDPNTWAKDGATALDAWAAS-DDGRLLAYSVQD 183 (741)
T ss_dssp EEETTEEEEEEECSSCS-------SCEEEEEETTSCTTCCC---EEEECGGGCC----EEEEEEEEC-TTSSEEEEEEEE
T ss_pred EEECCEEEEEEEcCCCe-------EEEEEEEcCCccCCCCC---EEEECHHHhccCCCEEEEeEEEC-CCCCEEEEEEcC
Confidence 49999999877655433 23455542 2332 223221 111234578998 899999998754
Q ss_pred -----CcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEEcCCC------------CeeEEEEecCCCe----EEEE
Q 011452 215 -----SIYKVFDLKNYTMLYS-ISDKNVQEIKISPGIMLLIFTKASG------------HVPLKILSIEDGT----VLKS 272 (485)
Q Consensus 215 -----~tiKlWdl~~g~~l~t-l~~~~V~~VafSpg~~ll~sss~~~------------D~tIklWdi~tG~----~L~t 272 (485)
.+|+|||+++|+.+.. +....+.+++|||+ ..+.+++.+. ...|++|++.+++ ++..
T Consensus 184 ~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 184 GGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp TTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred CCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 5799999999987543 22222357999998 5444544332 2349999998886 3333
Q ss_pred eecCCcceeEEEEEecCCCEEEEEeCC-----CcEEEEECCCC--eeEEecccCCCceEEEEEcCCCcEEEEEe-CC---
Q 011452 273 FNHLLHRNKKVDFIEQFNEKLLVKQEN-----ENLQILDVRNF--ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR--- 341 (485)
Q Consensus 273 l~~~~~~~~~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg--~~~~~l~gh~~~v~avaFspdg~llaS~s-D~--- 341 (485)
...+...+..+.|+ ||+.+|+..+.+ ..|.+||+.++ ++.+.+..+...+...+ +|+|+.|+..+ ++
T Consensus 263 ~~~~~~~~~~~~~S-pDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~ 340 (741)
T 1yr2_A 263 TPELPKRGHGASVS-SDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPL 340 (741)
T ss_dssp CTTCTTCEEEEEEC-TTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTT
T ss_pred cCCCCeEEEEEEEC-CCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCC
Confidence 33332346788886 788888887643 48999999988 52455555665666664 48888877766 33
Q ss_pred -cEEEEeCC-C-cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CCeEEEEecCC
Q 011452 342 -TVAVWNFR-G-ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL-TGKCLAKIRAS 417 (485)
Q Consensus 342 -TIklWd~~-G-~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TGk~l~tl~gH 417 (485)
.|.+||++ + ...+.+..|... .+.+++++ ++.+++++.. |+..+||.+. +|+++..+..+
T Consensus 341 ~~l~~~d~~~~~~~~~~l~~~~~~----~l~~~~~~-~~~lv~~~~~-----------dg~~~l~~~~~~g~~~~~l~~~ 404 (741)
T 1yr2_A 341 KKIVRVDLSGSTPRFDTVVPESKD----NLESVGIA-GNRLFASYIH-----------DAKSQVLAFDLDGKPAGAVSLP 404 (741)
T ss_dssp CEEEEEECSSSSCEEEEEECCCSS----EEEEEEEE-BTEEEEEEEE-----------TTEEEEEEEETTSCEEEECBCS
T ss_pred CEEEEEeCCCCccccEEEecCCCC----eEEEEEEE-CCEEEEEEEE-----------CCEEEEEEEeCCCCceeeccCC
Confidence 49999996 3 344444433322 26788887 6778888886 6888888654 58888888654
Q ss_pred CCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE----EecCCCcEEEccC
Q 011452 418 NGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY----TGNRHGLVHVWSN 485 (485)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La----Sgs~DgtVklWd~ 485 (485)
.. ..|..++++||++.|+ |....++|.+||.
T Consensus 405 ~~-------------------------------------~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 405 GI-------------------------------------GSASGLSGRPGDRHAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp SS-------------------------------------CEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred CC-------------------------------------eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence 21 2688899999999877 5566789999873
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-16 Score=147.92 Aligned_cols=231 Identities=10% Similarity=-0.021 Sum_probs=164.4
Q ss_pred CceEEEEeCCCCeEEE-EeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLT-YSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~La-s~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.|..++|+ ++|++++ +.+.++.|.+||..++....... ...+..|+++|++.+.++.. ++.|.+||..++. +
T Consensus 25 ~p~~i~~~-~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~-~ 99 (270)
T 1rwi_B 25 SPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNN-Q 99 (270)
T ss_dssp CEEEEEEC-TTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET---TTEEEEECTTCSC-C
T ss_pred CccceEEC-CCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC---CCEEEEEeCCCce-E
Confidence 67799998 7999888 66788999999976655322111 24688999998777777644 3689999986654 3
Q ss_pred EEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 271 KSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 271 ~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
..+. ........+++. +++..+++...++.|.+||..+.........+...+..+++.|+|+++++.. ++.|.+||.
T Consensus 100 ~~~~~~~~~~p~~i~~~-~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~ 178 (270)
T 1rwi_B 100 TVLPFDGLNYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 178 (270)
T ss_dssp EECCCCSCSSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeecCCcCCCcceEEC-CCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEec
Confidence 4443 223456788885 4555444446789999998776655444444556789999999999999988 899999999
Q ss_pred CCcEE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccc
Q 011452 349 RGELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427 (485)
Q Consensus 349 ~G~ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~ 427 (485)
++... .....+... ..+|+++|+|.+.++... ++.|.+||..+.........+
T Consensus 179 ~~~~~~~~~~~~~~~-----p~~i~~d~~g~l~v~~~~-----------~~~v~~~~~~~~~~~~~~~~~---------- 232 (270)
T 1rwi_B 179 ESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGSTTSTVLPFTG---------- 232 (270)
T ss_dssp TTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TSCEEEECTTCSCCEECCCCS----------
T ss_pred CCCceEeecccCCCC-----ceEEEECCCCCEEEEECC-----------CCcEEEEcCCCCcceeeccCC----------
Confidence 85433 332333222 789999999988888654 589999998654432211111
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+..+.+++++|||+.+++.+.+++|++++
T Consensus 233 ----------------------------~~~p~~i~~~~~g~l~v~~~~~~~v~~~~ 261 (270)
T 1rwi_B 233 ----------------------------LNTPLAVAVDSDRTVYVADRGNDRVVKLT 261 (270)
T ss_dssp ----------------------------CSCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred ----------------------------CCCceeEEECCCCCEEEEECCCCEEEEEc
Confidence 12688999999999999999999999986
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-16 Score=149.09 Aligned_cols=234 Identities=9% Similarity=-0.060 Sum_probs=167.5
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
+..+..+.. +.....+++|+|+|+.|+.++. .+ ..+..|+...+ . ..|.. ....+..++|+ ++
T Consensus 17 ~~~~~~l~~-~~~~~eg~~~d~~g~~l~~~~~---~~------~~i~~~~~~~~-~----~~~~~-~~~~~~~l~~~-~d 79 (296)
T 3e5z_A 17 GAEARRLAD-GFTWTEGPVYVPARSAVIFSDV---RQ------NRTWAWSDDGQ-L----SPEMH-PSHHQNGHCLN-KQ 79 (296)
T ss_dssp TCCCEEEEC-CCSSEEEEEEEGGGTEEEEEEG---GG------TEEEEEETTSC-E----EEEES-SCSSEEEEEEC-TT
T ss_pred CCcEEEEec-CCccccCCeEeCCCCEEEEEeC---CC------CEEEEEECCCC-e----EEEEC-CCCCcceeeEC-CC
Confidence 444444544 4456889999999994443331 22 47888886554 3 23443 34567789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEEcCC---------------CCeeEEEEe
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSIS------DKNVQEIKISPGIMLLIFTKAS---------------GHVPLKILS 263 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~------~~~V~~VafSpg~~ll~sss~~---------------~D~tIklWd 263 (485)
|+++++...++.|.+||.++|+...... ...+.+|+++|++.++++.+.. ....|..++
T Consensus 80 g~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 80 GHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp CCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred CcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 9999988888999999998888644332 1356789999988877763210 112444445
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC-CCee---EEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR-NFEL---TEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~-tg~~---~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
.. |+. ..+..+......++|+ |++..|++.+.++.|.+||+. +|++ .+++..+...+..++|.++|+++++.
T Consensus 160 ~~-g~~-~~~~~~~~~~~gi~~s-~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PD-GTL-SAPIRDRVKPNGLAFL-PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TT-SCE-EEEECCCSSEEEEEEC-TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CC-CCE-EEeecCCCCCccEEEC-CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 43 554 4455555667789996 777777555788999999997 6665 34444466678899999999999888
Q ss_pred CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEE-CCCCCEEEEEec
Q 011452 340 NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYI-TSDQDLIISYCK 385 (485)
Q Consensus 340 D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svaf-SpDG~~LaS~s~ 385 (485)
++.|.+||.+|+++..+..+.. +.+++| +|||+.|..++.
T Consensus 236 ~~~v~~~~~~g~~~~~~~~~~~------~~~~~f~~~d~~~L~v~t~ 276 (296)
T 3e5z_A 236 GDGVHVLTPDGDELGRVLTPQT------TSNLCFGGPEGRTLYMTVS 276 (296)
T ss_dssp TTEEEEECTTSCEEEEEECSSC------CCEEEEESTTSCEEEEEET
T ss_pred CCeEEEECCCCCEEEEEECCCC------ceeEEEECCCCCEEEEEcC
Confidence 8999999999999999987652 578999 699998888875
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-14 Score=133.54 Aligned_cols=274 Identities=9% Similarity=0.020 Sum_probs=191.0
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
.+.+..|++. |.+.++...++.+..|+.. |+........+...+.+|+++|+|..+++.. .+ ..+..
T Consensus 14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~------~~i~~ 82 (299)
T 2z2n_A 14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTEN----AA------NKIGR 82 (299)
T ss_dssp SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEET----TT------TEEEE
T ss_pred CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCC----CC------CeEEE
Confidence 3567888888 7777776668999999988 7755433222456799999999999777632 12 35666
Q ss_pred eEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE-EEEc--CCcEEEEEEcCCceEE
Q 011452 173 EYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-~tl~--~~~V~~VafSpg~~ll 248 (485)
++. .|+. ..+.. .....+..++++ ++|.++++...++.|.+||. +++.. +.+. ...+..++++|++.+.
T Consensus 83 ~~~-~g~~----~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~ 155 (299)
T 2z2n_A 83 ITK-KGII----KEYTLPNPDSAPYGITEG-PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALW 155 (299)
T ss_dssp ECT-TSCE----EEEECSSTTCCEEEEEEC-TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEE
T ss_pred ECC-CCcE----EEEeCCCcCCCceeeEEC-CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEE
Confidence 664 3543 12221 123467789997 79999988877899999998 66644 3333 3579999999877777
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~av 326 (485)
++... ...|..||. +|+.... +.........+++. +++..+++...++.|.+||. +++.... +..+...+.++
T Consensus 156 v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 230 (299)
T 2z2n_A 156 FTENQ--NNAIGRITE-SGDITEFKIPTPASGPVGITKG-NDDALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAI 230 (299)
T ss_dssp EEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEeCC--CCEEEEEcC-CCcEEEeeCCCCCCcceeEEEC-CCCCEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeE
Confidence 76443 368999999 8887653 33334556688875 45554444457899999999 7775543 44466789999
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCCCcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
++.++|+++++.. ++.|..||.+|+.... +.++... +.++++ ++|++.++.+. +.|..+|
T Consensus 231 ~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~-----~~~i~~-~~g~l~v~~~~------------~~l~~~~ 292 (299)
T 2z2n_A 231 TAGAGIDLWFTEWGANKIGRLTSNNIIEEYPIQIKSAE-----PHGICF-DGETIWFAMEC------------DKIGKLT 292 (299)
T ss_dssp EECSTTCEEEEETTTTEEEEEETTTEEEEEECSSSSCC-----EEEEEE-CSSCEEEEETT------------TEEEEEE
T ss_pred EECCCCCEEEeccCCceEEEECCCCceEEEeCCCCCCc-----cceEEe-cCCCEEEEecC------------CcEEEEE
Confidence 9999999999886 8999999998764322 3344333 889999 99999998642 5566667
Q ss_pred CCCCe
Q 011452 405 ILTGK 409 (485)
Q Consensus 405 l~TGk 409 (485)
..+++
T Consensus 293 ~~~~~ 297 (299)
T 2z2n_A 293 LIKDN 297 (299)
T ss_dssp EC---
T ss_pred cCccc
Confidence 66553
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-15 Score=155.70 Aligned_cols=255 Identities=13% Similarity=0.150 Sum_probs=180.6
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
.+..|..|+|+ ++|+++++...++.|++||++++++...+.. .... ++|+|++..+..+..+....|.+++..++..
T Consensus 129 ~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 129 KFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred ccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 46788899998 7999999988889999999998887655543 3334 9999865544443333323899999888776
Q ss_pred EEEe----ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe----cccCCCc-eE-EEEEcC-CCcEEEEE
Q 011452 270 LKSF----NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV----SRTEFMT-PS-AFIFLY-ENQLFLTF 338 (485)
Q Consensus 270 L~tl----~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~----l~gh~~~-v~-avaFsp-dg~llaS~ 338 (485)
+..+ .........+++. |+++.|.++..+++|..||..+++.... ..++... +. .++|+| ++.++++.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~-p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d 285 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALD-ETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSD 285 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEEC-TTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEE
T ss_pred eEEeeeccchhcCCcEEEEEe-CCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEe
Confidence 6666 3234566788885 5567788776789999999998875444 3333322 34 999999 68888888
Q ss_pred e-CCcEEEEeCCCcEEEEeecCC---CCCC-------CCCeeEEEECCCCCEEEEEe-cCCCCCCCCcCCCCeEEEEeCC
Q 011452 339 R-NRTVAVWNFRGELVTSFEDHL---LWHP-------DCNTNNIYITSDQDLIISYC-KADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 339 s-D~TIklWd~~G~ll~tl~gH~---~~~~-------~~~v~svafSpDG~~LaS~s-~d~~~d~~~~~~DgtIklWdl~ 406 (485)
+ +++|..|+.+|+ +.++.++. .+.. ...-+.|+|+|||+++++-+ . ++.|+.||+.
T Consensus 286 ~~~~~I~~~~~~g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------~~~I~~~~~~ 353 (409)
T 3hrp_A 286 QNLSSVYKITPDGE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------GYCLRKLDIL 353 (409)
T ss_dssp TTTTEEEEECTTCC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------TCEEEEEETT
T ss_pred CCCCEEEEEecCCC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------CCEEEEEECC
Confidence 8 999999999987 55666654 0000 01267999999999888855 4 6899999988
Q ss_pred CCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 407 TGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 407 TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
+|+ +.++.++.... ...++ ......+...++|+++|||+.+++-..++.|+..+
T Consensus 354 ~G~-v~~~~g~~~~~-----g~~~g------------------~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~ 407 (409)
T 3hrp_A 354 DGY-VSTVAGQVDVA-----SQIDG------------------TPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYA 407 (409)
T ss_dssp TTE-EEEEEECTTCB-----SCCCB------------------STTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEE
T ss_pred CCE-EEEEeCCCCCC-----CcCCC------------------ChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEE
Confidence 887 56676763100 00000 00011134788999999999999999999998754
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-15 Score=142.62 Aligned_cols=232 Identities=12% Similarity=0.113 Sum_probs=168.0
Q ss_pred cccCceEEEEeCCCCeEEEE-------eeCCCcEEEeecCCCeEEEE-E-----cCCcEEEEEEcCC-ceEEEEEcCCCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTY-------SAQDSIYKVFDLKNYTMLYS-I-----SDKNVQEIKISPG-IMLLIFTKASGH 256 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las-------~s~D~tiKlWdl~~g~~l~t-l-----~~~~V~~VafSpg-~~ll~sss~~~D 256 (485)
.+..+..++|+ ++|.++++ +..++.|.+||+.+++.... . ....+..++++|+ +.+.++...
T Consensus 16 ~~~~~~~~~~~-~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~--- 91 (314)
T 1pjx_A 16 DIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR--- 91 (314)
T ss_dssp CCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT---
T ss_pred cCCCccCceEC-CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC---
Confidence 35678899998 79999888 67789999999988886432 2 2357999999987 887776542
Q ss_pred eeEEEEecCCCeEEEE-eec----CCcceeEEEEEecCCCEEEEEeCC---------------CcEEEEECCCCeeEEec
Q 011452 257 VPLKILSIEDGTVLKS-FNH----LLHRNKKVDFIEQFNEKLLVKQEN---------------ENLQILDVRNFELTEVS 316 (485)
Q Consensus 257 ~tIklWdi~tG~~L~t-l~~----~~~~~~~V~f~~~~~~~lls~s~D---------------~tIkIWDv~tg~~~~~l 316 (485)
..|.+||.+ |+.... ... ....+..+++. +++..+++...+ +.|..||.. ++.....
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 379999998 886543 221 11345688885 555444444444 567777776 6654443
Q ss_pred ccCCCceEEEEEc----CCCc-EEEEEe-CCcEEEEeCC--Cc-----EEEEeecCC-CCCCCCCeeEEEECCCCCEEEE
Q 011452 317 RTEFMTPSAFIFL----YENQ-LFLTFR-NRTVAVWNFR--GE-----LVTSFEDHL-LWHPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 317 ~gh~~~v~avaFs----pdg~-llaS~s-D~TIklWd~~--G~-----ll~tl~gH~-~~~~~~~v~svafSpDG~~LaS 382 (485)
.+...+..++|+ |||+ ++++.. ++.|.+||.+ |+ .+..+.++. .. ...++++|||++.++
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~-----p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG-----ADGMDFDEDNNLLVA 242 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE-----EEEEEEBTTCCEEEE
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC-----CCceEECCCCCEEEE
Confidence 345568899999 9996 456656 8999999974 54 334455443 23 688999999999998
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
... ++.|.+||..+|+.+..+..+. ..+.++
T Consensus 243 ~~~-----------~~~i~~~d~~~g~~~~~~~~~~--------------------------------------~~~~~i 273 (314)
T 1pjx_A 243 NWG-----------SSHIEVFGPDGGQPKMRIRCPF--------------------------------------EKPSNL 273 (314)
T ss_dssp EET-----------TTEEEEECTTCBSCSEEEECSS--------------------------------------SCEEEE
T ss_pred EcC-----------CCEEEEEcCCCCcEeEEEeCCC--------------------------------------CCceeE
Confidence 764 5899999998899888876653 278999
Q ss_pred EEcCCCCEE-EEecCCCcEEEcc
Q 011452 463 FYDEDRNEI-YTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~L-aSgs~DgtVklWd 484 (485)
+|+|||+.| ++.+.++.|..|+
T Consensus 274 ~~~~dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 274 HFKPQTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp EECTTSSEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEeCCCCeEEEEe
Confidence 999999955 4555677887775
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-15 Score=138.65 Aligned_cols=237 Identities=9% Similarity=0.009 Sum_probs=165.3
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
...+|+++|+|+.++++. . .+ ..+..++...+.. ..+.......|..++|+ ++|+++++.. ++.|
T Consensus 25 ~p~~i~~~~~g~l~v~~~--~-~~------~~i~~~~~~~~~~----~~~~~~~~~~p~~i~~~-~~g~l~v~~~-~~~i 89 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSE--G-MY------GRVVKLATGSTGT----TVLPFNGLYQPQGLAVD-GAGTVYVTDF-NNRV 89 (270)
T ss_dssp CEEEEEECTTCCEEEEEC--S-SS------CEEEEECC---------EECCCCSCCSCCCEEEC-TTCCEEEEET-TTEE
T ss_pred CccceEECCCCCEEEEcc--C-CC------CcEEEecCCCccc----ceEeeCCcCCcceeEEC-CCCCEEEEcC-CCEE
Confidence 578999999999666221 1 22 4677777533332 11222234567789997 7899888777 8899
Q ss_pred EEeecCCCeEEEEE--cC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEE
Q 011452 218 KVFDLKNYTMLYSI--SD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (485)
Q Consensus 218 KlWdl~~g~~l~tl--~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~ll 294 (485)
.+||..+.... .+ .+ ..+..|+++|++.+.++... ++.|.+|+..++...............+++. +++..++
T Consensus 90 ~~~d~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~-~~g~l~v 165 (270)
T 1rwi_B 90 VTLAAGSNNQT-VLPFDGLNYPEGLAVDTQGAVYVADRG--NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD-NSGNVYV 165 (270)
T ss_dssp EEECTTCSCCE-ECCCCSCSSEEEEEECTTCCEEEEEGG--GTEEEEECTTCCSCEECCCCSCCSCCCEEEC-TTCCEEE
T ss_pred EEEeCCCceEe-eeecCCcCCCcceEECCCCCEEEEECC--CCEEEEEECCCceeEeeccccCCCceeEEEe-CCCCEEE
Confidence 99998765432 23 22 57999999987777776443 3689999876655443332333456688885 5555444
Q ss_pred EEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEee-cCCCCCCCCCeeEEE
Q 011452 295 VKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFE-DHLLWHPDCNTNNIY 372 (485)
Q Consensus 295 s~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~-gH~~~~~~~~v~sva 372 (485)
+...++.|.+||..++........+...+..+++.|+|.++++.. ++.|.+||.+|.....+. .+... +.+|+
T Consensus 166 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----p~~i~ 240 (270)
T 1rwi_B 166 TDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNT-----PLAVA 240 (270)
T ss_dssp EEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSC-----EEEEE
T ss_pred EECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCC-----ceeEE
Confidence 445789999999998776665555657899999999999999988 999999999866544332 23223 78999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGK 409 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk 409 (485)
|+|||+++++.+. +++|+++++...+
T Consensus 241 ~~~~g~l~v~~~~-----------~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 241 VDSDRTVYVADRG-----------NDRVVKLTSLEHH 266 (270)
T ss_dssp ECTTCCEEEEEGG-----------GTEEEEECCCGGG
T ss_pred ECCCCCEEEEECC-----------CCEEEEEcCCCcc
Confidence 9999998888775 6999999976543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.5e-15 Score=144.68 Aligned_cols=233 Identities=10% Similarity=0.097 Sum_probs=173.4
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+++|++++.|+.+.+||.+||+.+-++.......+++++++|||+.|++ . + ..+..++. +|+.
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~---~-------~~V~~~d~-~G~~---- 67 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--Y---S-------KGAKMITR-DGRE---- 67 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--C---B-------SEEEEECT-TSCE----
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--C---C-------CCEEEECC-CCCE----
Confidence 6899999999999999998999999887733246899999999998873 1 2 36888885 8886
Q ss_pred ceeeecc--ccCceEEEEeCCCCeEEEEeeC-CCcEEEeecCCCeEEEEEc--C------CcEEEEEEcCCceEEEEEcC
Q 011452 185 ALFESES--LKWPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--D------KNVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 185 ~lf~~~~--~~~~~~V~Fs~pnG~~Las~s~-D~tiKlWdl~~g~~l~tl~--~------~~V~~VafSpg~~ll~sss~ 253 (485)
+|+... ...+..+.+. +||++|++.+. ++.|..+|. +|+.+.++. . .....+++.+++.++++..
T Consensus 68 -~W~~~~~~~~~~~~~~~~-~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~- 143 (276)
T 3no2_A 68 -LWNIAAPAGCEMQTARIL-PDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF- 143 (276)
T ss_dssp -EEEEECCTTCEEEEEEEC-TTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET-
T ss_pred -EEEEcCCCCccccccEEC-CCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec-
Confidence 555421 1234578887 79999999887 777777775 788877663 1 1355678888666666654
Q ss_pred CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccC------CCceEEEE
Q 011452 254 SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTE------FMTPSAFI 327 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh------~~~v~ava 327 (485)
.++.|..||.+ |+.+.++... .....+.+. +++..++++..++.|..+|.+||+.+-.+..+ ...+..++
T Consensus 144 -~~~~v~~~d~~-G~~~w~~~~~-~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~ 219 (276)
T 3no2_A 144 -ATSEVREIAPN-GQLLNSVKLS-GTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLF 219 (276)
T ss_dssp -TTTEEEEECTT-SCEEEEEECS-SCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEE
T ss_pred -CCCEEEEECCC-CCEEEEEECC-CCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccce
Confidence 34799999997 9999999854 345566664 55666666778889999999999998777432 23588999
Q ss_pred EcCCCcEEEEEeCC---------cEEEEeC--CCcEEEEeecCCCC
Q 011452 328 FLYENQLFLTFRNR---------TVAVWNF--RGELVTSFEDHLLW 362 (485)
Q Consensus 328 Fspdg~llaS~sD~---------TIklWd~--~G~ll~tl~gH~~~ 362 (485)
..++|.++++.+++ ..++..+ +|+++-+|..+..+
T Consensus 220 ~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 220 PLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp ECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 99999999987533 2345555 37777777776655
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-15 Score=150.17 Aligned_cols=265 Identities=10% Similarity=0.076 Sum_probs=177.1
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccccee---eeccccCceEEEEeCCCCeEEEEeeC
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF---ESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf---~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
.....|+++|+|+.+++..... .+ .++||.+..|++.. ++-+ ..+++..|..|+|+ ++|++++..+.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~-~~-------~~~l~~~~~g~~~~-~p~~~~~~~~~~~~p~gv~~d-~~g~L~v~D~g 86 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY-QP-------EMQVAELTQDGLIP-FPPQSGNAIITFDTVLGIKSD-GNGIVWMLDNG 86 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG-CC-------SCSEEEEETTEEEE-SCCCCSSCCCCCSCEEEEEEC-SSSEEEEEECH
T ss_pred CCcceEEECCCCCEEEEeCCCC-CC-------ceEEEEECCCCeec-CCCcccCcccceeEeeEEEEc-CCCcEEEEcCC
Confidence 5789999999999887754322 12 14566665555421 1111 11346778899998 78998887654
Q ss_pred -----CCcEEEeecCCCeEEEEEc--C------CcEEEEEEcC-CceEEEEEcC-CCCeeEEEEecCCCeEEEEeecCCc
Q 011452 214 -----DSIYKVFDLKNYTMLYSIS--D------KNVQEIKISP-GIMLLIFTKA-SGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 214 -----D~tiKlWdl~~g~~l~tl~--~------~~V~~VafSp-g~~ll~sss~-~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
+..|.+||+++++++.++. . ..+..|+|+| ++.+.++.+. +.+..|.+||+++|+..+.+.+|..
T Consensus 87 ~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 87 NQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred CCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 6889999999999776663 1 2568999996 6676666431 0357999999999998888865432
Q ss_pred cee-EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC------C
Q 011452 279 RNK-KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR------G 350 (485)
Q Consensus 279 ~~~-~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~------G 350 (485)
... .+.|. +++..+.+.+.|++++.|.. .++.++|+|||+.|..+. +++ +||.++ +
T Consensus 167 ~~~~~~~~~-~~g~~~~~~~~~g~~~~~~~--------------~~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~ 230 (343)
T 2qe8_A 167 IAPEDIDLV-IDGVPVQIGQPDGTVIRPHL--------------GVNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNL 230 (343)
T ss_dssp TSCCSCCCE-ETTEECBEECTTSCEECCCC--------------CEEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCT
T ss_pred cccccccee-ECCEEEEeccCCCceeceec--------------ccceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCC
Confidence 211 13343 33444555678888877742 468899999998777776 554 566652 1
Q ss_pred c-----EEE--EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCC
Q 011452 351 E-----LVT--SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAE 423 (485)
Q Consensus 351 ~-----ll~--tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~ 423 (485)
. ... ...++... ..++++++||.++++... ++.|.+||..+|+.. ++....
T Consensus 231 ~~~~~~~~~~~~~~g~~g~-----pdgia~d~~G~l~va~~~-----------~~~V~~~d~~~G~~~-~~~~~~----- 288 (343)
T 2qe8_A 231 QLTDAELGSKIERYSEKPI-----CDGISIDKDHNIYVGDLA-----------HSAIGVITSADRAYK-LLVTDE----- 288 (343)
T ss_dssp TCCHHHHHTTCEEEEECCS-----CSCEEECTTCCEEEEEGG-----------GTEEEEEETTTTEEE-EEEECG-----
T ss_pred CCChhhhhcceEecccCCC-----CceEEECCCCCEEEEccC-----------CCeEEEEECCCCCEE-EEEECC-----
Confidence 1 000 12233332 467999999999998765 689999998678743 333221
Q ss_pred cccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcE
Q 011452 424 NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtV 480 (485)
.+..+++|+|+|||+.+++.+..+.+
T Consensus 289 -------------------------------~~~~p~~va~~~~g~l~v~~~~~~~~ 314 (343)
T 2qe8_A 289 -------------------------------KLSWTDSFNFGSDGYLYFDCNQLHHS 314 (343)
T ss_dssp -------------------------------GGSCEEEEEECTTSCEEEEECCGGGS
T ss_pred -------------------------------ceecCCeeEECCCCcEEEEeCccccc
Confidence 01378999999999999998865544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.67 E-value=7.1e-14 Score=135.99 Aligned_cols=224 Identities=10% Similarity=0.125 Sum_probs=159.7
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t 272 (485)
.+.....|++.++.++.+...+++|..||.++++....-....+..++++|++.++++. +..|.+||.++|+....
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l~v~~----~~~l~~~d~~~g~~~~~ 88 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGYVATI----GTKFCALNWKEQSAVVL 88 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSEEEEE----TTEEEEEETTTTEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCEEEEE----CCeEEEEECCCCcEEEE
Confidence 34557888855788888888899999999998876332235689999999877777764 24899999999876433
Q ss_pred eec----CCcceeEEEEEecCCCEEEEEe-C--------CCcEEEEECCC-CeeEEecccCCCceEEEEEcCCCcEE-EE
Q 011452 273 FNH----LLHRNKKVDFIEQFNEKLLVKQ-E--------NENLQILDVRN-FELTEVSRTEFMTPSAFIFLYENQLF-LT 337 (485)
Q Consensus 273 l~~----~~~~~~~V~f~~~~~~~lls~s-~--------D~tIkIWDv~t-g~~~~~l~gh~~~v~avaFspdg~ll-aS 337 (485)
... .......+++. +++..+++.. . ..+-+||.+.. ++... +..+...++.++|+|||+.| ++
T Consensus 89 ~~~~~~~~~~~~~di~~d-~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~lyv~ 166 (297)
T 3g4e_A 89 ATVDNDKKNNRFNDGKVD-PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIFYYI 166 (297)
T ss_dssp EECCTTCSSEEEEEEEEC-TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEEEEE
T ss_pred EecCCCCCCCCCCCEEEC-CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEEEEe
Confidence 221 11235678875 5565444432 2 24567776653 44433 33455678999999999855 56
Q ss_pred Ee-CCcEEEEeC--C-CcE-----EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 338 FR-NRTVAVWNF--R-GEL-----VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 338 ~s-D~TIklWd~--~-G~l-----l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
.+ ++.|.+||+ . |++ +..+..+... ..++++.+||.+.++... .+.|..||..||
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~-----p~g~~~d~~G~lwva~~~-----------~~~v~~~d~~tG 230 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI-----PDGMCIDAEGKLWVACYN-----------GGRVIRLDPVTG 230 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE-----EEEEEEBTTSCEEEEEET-----------TTEEEEECTTTC
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC-----CCeeEECCCCCEEEEEcC-----------CCEEEEEcCCCc
Confidence 66 899999986 3 654 2333333222 679999999998888764 588999999999
Q ss_pred eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc-CCCCEEEEecC
Q 011452 409 KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD-EDRNEIYTGNR 476 (485)
Q Consensus 409 k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs-pDg~~LaSgs~ 476 (485)
+++.++..+. ..+++++|+ ||+++|+-++.
T Consensus 231 ~~~~~i~~p~--------------------------------------~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPV--------------------------------------DKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSS--------------------------------------SBEEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCC--------------------------------------CCceEEEEeCCCCCEEEEEcC
Confidence 9999998764 278999999 99998766553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-12 Score=122.00 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=185.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
.....++|++.|+|..+++.. .. ..+.+++.. |+.. .+.. .....+..++++ ++|.+.++...
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~---~~-------~~v~~~~~~-~~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~ 81 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQH---KA-------NKISSLDQS-GRIK----EFEVPTPDAKVMCLIVS-SLGDIWFTENG 81 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEET---TT-------TEEEEECTT-SCEE----EEECSSTTCCEEEEEEC-TTSCEEEEETT
T ss_pred CCCCcceeeECCCCCEEEEcC---CC-------CeEEEECCC-CceE----EEECCCCCCcceeEEEC-CCCCEEEEecC
Confidence 345789999999999776532 12 367777754 6542 1221 123567789997 79999888777
Q ss_pred CCcEEEeecCCCeEE-EEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEEEecC
Q 011452 214 DSIYKVFDLKNYTML-YSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 214 D~tiKlWdl~~g~~l-~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f~~~~ 289 (485)
++.|..+|.+ ++.. +.+. ...+..+++.|++.+.++... +..|..+|.. |+... .+.........+++. ++
T Consensus 82 ~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d-~~ 156 (300)
T 2qc5_A 82 ANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLN--GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG-SD 156 (300)
T ss_dssp TTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETT--TTEEEEECTT-SCEEEEECSSTTCCEEEEEEC-TT
T ss_pred CCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccC--CCeEEEECCC-CCEEEccCCCCCCCceeEEEC-CC
Confidence 8999999988 6643 3333 357999999987777776442 3689999987 77653 233334556778875 45
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEE-eecCCCCCCCC
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS-FEDHLLWHPDC 366 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~t-l~gH~~~~~~~ 366 (485)
+..+++...++.|..+|. +++.... +..+...+..+++.++|+++++.. ++.|.+||.+|+.... +..+...
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~---- 231 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTTGEISEYDIPTPNAR---- 231 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEECSSTTCC----
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCCCcEEEEECCCCCCC----
Confidence 553444456889999999 6665543 334566899999999999999887 7889999998776543 3333322
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE-ecCCCCCCCCcccccCCCCCCCCccccccccc
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK-IRASNGLPAENECSCSGDYSSGSCNVKKHSHA 445 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t-l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (485)
+.+|+++|+|++.++... ++.|..+|. +|+.... +..+.
T Consensus 232 -~~~i~~d~~g~l~v~~~~-----------~~~i~~~~~-~g~~~~~~~~~~~--------------------------- 271 (300)
T 2qc5_A 232 -PHAITAGKNSEIWFTEWG-----------ANQIGRITN-DNTIQEYQLQTEN--------------------------- 271 (300)
T ss_dssp -EEEEEECSTTCEEEEETT-----------TTEEEEECT-TSCEEEEECCSTT---------------------------
T ss_pred -ceEEEECCCCCEEEeccC-----------CCeEEEECC-CCcEEEEECCccC---------------------------
Confidence 789999999998887643 589999997 5764422 22111
Q ss_pred cccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 446 SRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 446 ~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
..+.+++++|+|+..++..
T Consensus 272 -----------~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 272 -----------AEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp -----------CCCCCEEECTTSCEEEECS
T ss_pred -----------CccceeEeCCCCCEEEEcc
Confidence 2677899999999877776
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-12 Score=139.71 Aligned_cols=302 Identities=8% Similarity=0.023 Sum_probs=205.8
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecc--cCcEEEEeecCCcccEEEEEEe----eCCCEEEEEEeecCCCCccccee
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYN----KNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~--tG~~l~tl~g~~~~~i~sv~~s----pdg~~Las~S~d~~~d~stL~~~ 168 (485)
.+..++|+ |.++++++.|+++.+||+. +++.+.++..+. .-+.++|| |||+.|++++... .
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~--~P~~ia~s~~~~pDGk~l~v~n~~~---------~ 266 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS--EARSIETSKMEGWEDKYAIAGAYWP---------P 266 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS--EEEEEEECCSTTCTTTEEEEEEEET---------T
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC--CCceeEEccccCCCCCEEEEEEccC---------C
Confidence 45678888 8999999999999999995 899999887643 36899999 7999998877532 4
Q ss_pred EEEEeEeccCCcCcccceeeec------c-ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE--EEEc-CCcEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESE------S-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML--YSIS-DKNVQE 238 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~------~-~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l--~tl~-~~~V~~ 238 (485)
++.++|..+.++.+..++-... + ...+..+.+++.+...+++...+++|.++|..+.+.+ .++. +.....
T Consensus 267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d 346 (567)
T 1qks_A 267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHD 346 (567)
T ss_dssp EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEE
T ss_pred eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccC
Confidence 7888898777764322221110 0 0123467777434555666677899999998876532 3333 457889
Q ss_pred EEEcCCceE-EEEEcCCCCeeEEEEecCCCeEEEEeec-C--CcceeEEEEEecCCCEEEEEe--CCCcEEEEECCC---
Q 011452 239 IKISPGIML-LIFTKASGHVPLKILSIEDGTVLKSFNH-L--LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRN--- 309 (485)
Q Consensus 239 VafSpg~~l-l~sss~~~D~tIklWdi~tG~~L~tl~~-~--~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~t--- 309 (485)
+.|+|++++ ++++.. +.+|.++|+++|+++.++.- - -|.-..+.|..|+++.+.+.+ .+++|-++|..+
T Consensus 347 ~~~~pdgr~~~va~~~--sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~ 424 (567)
T 1qks_A 347 GGLDGSHRYFITAANA--RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 424 (567)
T ss_dssp EEECTTSCEEEEEEGG--GTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred ceECCCCCEEEEEeCC--CCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCC
Confidence 999986654 444433 36899999999999888763 1 111234556557666666554 579999999998
Q ss_pred ----CeeEEecccCCCceEEEEEcCCCcEEEEEe----C----CcEEEEeCC-C-----c-EEEEee-c--CCCCCCCCC
Q 011452 310 ----FELTEVSRTEFMTPSAFIFLYENQLFLTFR----N----RTVAVWNFR-G-----E-LVTSFE-D--HLLWHPDCN 367 (485)
Q Consensus 310 ----g~~~~~l~gh~~~v~avaFspdg~llaS~s----D----~TIklWd~~-G-----~-ll~tl~-g--H~~~~~~~~ 367 (485)
.+.++++.+.......+.++||++.|-... | ++|.++|+. . + .+..+. + .........
T Consensus 425 ~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 504 (567)
T 1qks_A 425 PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPR 504 (567)
T ss_dssp TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCE
T ss_pred ccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcc
Confidence 567777765544445577899998766544 2 499999985 5 1 223332 0 000000112
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+..+.|+|||+++..+....+++ ++.|-+.|.+|++++++|++.
T Consensus 505 ~~~~~~~~~G~~~~~s~~~~~~~------~~~i~v~D~~t~~~~~~i~~~ 548 (567)
T 1qks_A 505 VVQGEFNKDGTEVWFSVWNGKDQ------ESALVVVDDKTLELKHVIKDE 548 (567)
T ss_dssp EEEEEECTTSSEEEEEEECCTTS------CCEEEEEETTTTEEEEEECCT
T ss_pred eEeeeECCCCCEEEEEeecCCCC------CCcEEEEECCCceEEEEeCCC
Confidence 78999999999887764311112 689999999999999999863
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-12 Score=133.06 Aligned_cols=284 Identities=10% Similarity=0.039 Sum_probs=182.0
Q ss_pred EEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------
Q 011452 143 FYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA---------- 212 (485)
Q Consensus 143 ~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s---------- 212 (485)
...|+++.+..+... ..+ .+. ++.++|..++++.. .+..+ ..+ .++|+ |||+.|..+.
T Consensus 27 ~~~~~~~~~yv~~~~-~~~--~~~--~v~v~D~~t~~~~~---~i~~g--~~p-~i~~s-pDg~~lyv~n~~~~~~~rg~ 94 (373)
T 2mad_H 27 APGADGRRSYINLPA-HHS--AII--QQWVLDAGSGSILG---HVNGG--FLP-NPVAA-HSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred cCCCCCCEEEEeCCc-ccC--Ccc--EEEEEECCCCeEEE---EecCC--CCC-CeEEC-CCCCEEEEEeccccccccCC
Confidence 345777765543210 121 122 77888888887632 12222 234 89998 7999887764
Q ss_pred CCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeE
Q 011452 213 QDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKK 282 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~ 282 (485)
.|++|-+||+.+++.+.++.- ..-..++|||+++.|..+....+.+|-++| ++|+++++ +.- . ..
T Consensus 95 ~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~--~--~~ 169 (373)
T 2mad_H 95 RTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS--P--TC 169 (373)
T ss_pred CCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC--C--ce
Confidence 378999999999998877742 234579999866655544332246899999 99999988 652 1 12
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc------cCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C--cE
Q 011452 283 VDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G--EL 352 (485)
Q Consensus 283 V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~------gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G--~l 352 (485)
+.+.+..+..+++.+.|+++.++|. +++...... +.........|++++..++-.+ .++|.+.|+. + +.
T Consensus 170 ~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v 248 (373)
T 2mad_H 170 YHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN 248 (373)
T ss_pred EEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE
Confidence 4554333344455579999999999 887663321 1111112245677665544444 7889999986 3 23
Q ss_pred EEEeec------CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 353 VTSFED------HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 353 l~tl~g------H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
+.+++- ...|.|.+ ...++|+|||+.|..+.....++ .-...+++|-+.|+.|++.+++|..-.
T Consensus 249 ~~~~~~~~~~~~~~~~~p~g-~~~~~~s~d~~~lyV~~~~~~~~-~~~~~~~~V~VID~~t~~vv~~i~~g~-------- 318 (373)
T 2mad_H 249 KAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSEQSAW-KLHAAAKEVTSVTGLVGQTSSQISLGH-------- 318 (373)
T ss_pred eeeeeecCCcccccceecCc-eEeEEECCCCCEEEEEeccCCcc-cccCCCCeEEEEECCCCEEEEEEECCC--------
Confidence 344421 12233333 35589999999887765310000 000114689999999999999996422
Q ss_pred ccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEccC
Q 011452 427 SCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWSN 485 (485)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd~ 485 (485)
..++++|+|||+ .||+++ .+++|.|+|.
T Consensus 319 -------------------------------~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~ 348 (373)
T 2mad_H 319 -------------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred -------------------------------CcCeEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence 467899999999 899998 5999999983
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=148.28 Aligned_cols=251 Identities=14% Similarity=0.068 Sum_probs=173.3
Q ss_pred CcccEEEEEEeeCCCEEEEEEe-ecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc--eEEEEeCCCCeEEEEe
Q 011452 135 ADEVIRSLFYNKNNDSLITVSV-YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYS 211 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~-d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~pnG~~Las~ 211 (485)
+...+.++.|||||+.||-++. .|++. .+++++|+.+|+... . .+.+. ..++|+ ||+.|+++
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~------~~i~v~dl~tg~~~~---~----~~~~~k~~~~~Ws--Dg~~l~y~ 191 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDW------REIHLMDVESKQPLE---T----PLKDVKFSGISWL--GNEGFFYS 191 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCE------EEEEEEETTTCSEEE---E----EEEEEESCCCEEE--TTTEEEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCce------EEEEEEECCCCCCCc---c----ccCCceeccEEEe--CCCEEEEE
Confidence 4457999999999999986554 34444 689999999998621 1 11122 367897 89999999
Q ss_pred eCCCc-------------EEEeecCCCe----EEEEEcC---CcEEEEEEcCCce-EEEEEcCC-CCeeEEEEecCCCe-
Q 011452 212 AQDSI-------------YKVFDLKNYT----MLYSISD---KNVQEIKISPGIM-LLIFTKAS-GHVPLKILSIEDGT- 268 (485)
Q Consensus 212 s~D~t-------------iKlWdl~~g~----~l~tl~~---~~V~~VafSpg~~-ll~sss~~-~D~tIklWdi~tG~- 268 (485)
+.|.+ |++|++.++. +++...+ ..+.++.+||++. |+++...+ ....|.+||+.+++
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~ 271 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA 271 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC
Confidence 98855 9999998764 5555544 2578999998665 44443322 23589999998874
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEEe-C---CCcEEEEECCCCee--EEecccCCCceEEEEEcCCCcEEEEEe--C
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-E---NENLQILDVRNFEL--TEVSRTEFMTPSAFIFLYENQLFLTFR--N 340 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~---D~tIkIWDv~tg~~--~~~l~gh~~~v~avaFspdg~llaS~s--D 340 (485)
.++.+..+......+ +. +++++|+..+ . ...|.+||+.++++ .+.+..|...+. .|+|+++.|+... |
T Consensus 272 ~~~~l~~~~~~~~~~-~~-~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~ 347 (693)
T 3iuj_A 272 PLLTVQGDLDADVSL-VD-NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVD 347 (693)
T ss_dssp CCEEEECSSSSCEEE-EE-EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEET
T ss_pred ceEEEeCCCCceEEE-Ee-ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEEC
Confidence 466676555555444 33 5677777754 3 36899999998765 344556666665 8999999887766 5
Q ss_pred C--cEEEEeCCCcEEEEeec-CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 341 R--TVAVWNFRGELVTSFED-HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 341 ~--TIklWd~~G~ll~tl~g-H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+ .|++||++|...+.+.- +... +..+.++||++.|+-...+ ...-++|.+||+.+|+. ..|...
T Consensus 348 g~~~l~~~d~~g~~~~~l~~p~~~~-----~~~~~~~~d~~~l~~~~ss-------~~tP~~l~~~d~~~g~~-~~l~~~ 414 (693)
T 3iuj_A 348 ATARVEQFDYEGKRVREVALPGLGS-----VSGFNGKHDDPALYFGFEN-------YAQPPTLYRFEPKSGAI-SLYRAS 414 (693)
T ss_dssp TEEEEEEECTTSCEEEEECCSSSSE-----EEECCCCTTCSCEEEEEEC-------SSSCCEEEEECTTTCCE-EEEECC
T ss_pred CeeEEEEEECCCCeeEEeecCCCce-----EEeeecCCCCCEEEEEecC-------CCCCCEEEEEECCCCeE-EEEEeC
Confidence 4 78999998777666642 2222 7788889999877655431 11237999999998874 445543
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-11 Score=115.47 Aligned_cols=261 Identities=10% Similarity=0.045 Sum_probs=182.2
Q ss_pred ccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 95 ~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
.+.+..|++. |.+.++...++.+..|+.. |+........+...+.+|++.++|..+++.. .+ ..+..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~------~~v~~ 87 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTEN----GA------NKIGK 87 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEET----TT------TEEEE
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEec----CC------CeEEE
Confidence 3456677777 7777777788999999987 7765432222335799999999999776522 12 35666
Q ss_pred eEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE-EEEc--CCcEEEEEEcCCceEE
Q 011452 173 EYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-~tl~--~~~V~~VafSpg~~ll 248 (485)
++.. |+.. .+.. .....+..++++ ++|+++++...++.|..+|.+ ++.. +.+. ...+..+++.|++.+.
T Consensus 88 ~d~~-g~~~----~~~~~~~~~~~~~i~~~-~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~ 160 (300)
T 2qc5_A 88 LSKK-GGFT----EYPLPQPDSGPYGITEG-LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALW 160 (300)
T ss_dssp ECTT-SCEE----EEECSSTTCCEEEEEEC-STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEE
T ss_pred ECCC-CCeE----EecCCCCCCCCccceEC-CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEE
Confidence 6754 6641 2221 123457789997 799998888778899999987 6654 3343 3579999999877776
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEE-eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKS-FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~t-l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~av 326 (485)
++... ...|..+|. +|+.... +..+......+++. +++..+++...++.|.+||. +++.... +..+...+.++
T Consensus 161 v~~~~--~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i 235 (300)
T 2qc5_A 161 FTENQ--NNSIGRITN-TGKLEEYPLPTNAAAPVGITSG-NDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAI 235 (300)
T ss_dssp EEETT--TTEEEEECT-TCCEEEEECSSTTCCEEEEEEC-TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEE
T ss_pred EEecC--CCeEEEECC-CCcEEEeeCCCCCCCcceEEEC-CCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEE
Confidence 66443 368999998 7776542 22333456688875 44544444456788999999 5665544 44566789999
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCCCcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFRGELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
++.++|+++++.. ++.|..+|.+|+... .+..+... +.+|+++|+|++.++.
T Consensus 236 ~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~-----~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 236 TAGKNSEIWFTEWGANQIGRITNDNTIQEYQLQTENAE-----PHGITFGKDGSVWFAL 289 (300)
T ss_dssp EECSTTCEEEEETTTTEEEEECTTSCEEEEECCSTTCC-----CCCEEECTTSCEEEEC
T ss_pred EECCCCCEEEeccCCCeEEEECCCCcEEEEECCccCCc-----cceeEeCCCCCEEEEc
Confidence 9999999999887 899999999876543 23323222 7899999999988863
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-12 Score=125.24 Aligned_cols=233 Identities=12% Similarity=0.094 Sum_probs=159.8
Q ss_pred ceEEEEEe--cCEEEE-------EeCCCeEEeeecccCcEEEEee---cCCcccEEEEEEeeC-CCEEEEEEeecCCCCc
Q 011452 97 KIIEIVAA--RDIVFA-------LAQSGVCAAFCRETNQRICFLN---VTADEVIRSLFYNKN-NDSLITVSVYASDNFS 163 (485)
Q Consensus 97 ~V~~i~~s--~~~ias-------~s~dgtiklW~~~tG~~l~tl~---g~~~~~i~sv~~spd-g~~Las~S~d~~~d~s 163 (485)
....+++. +.++++ ...++.+..|+..+|+...... .++...+.+++++|+ |+.+++.+ .+
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~----~~-- 92 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM----RL-- 92 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET----TT--
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC----CC--
Confidence 34567776 666666 5788999999988888654322 013356899999999 77665422 22
Q ss_pred ccceeEEEEeEeccCCcCcccce-eee---ccccCceEEEEeCCCCeEEEEeeCC---------------CcEEEeecCC
Q 011452 164 SLRCRSTRIEYIRRGKPDAGFAL-FES---ESLKWPGFVEFDDVNGKVLTYSAQD---------------SIYKVFDLKN 224 (485)
Q Consensus 164 tL~~~t~~lw~i~~G~~~~~~~l-f~~---~~~~~~~~V~Fs~pnG~~Las~s~D---------------~tiKlWdl~~ 224 (485)
.+.+++.. |++.. + ... .....+..++|+ ++|+++++...+ +.|..||.+
T Consensus 93 -----~l~~~d~~-g~~~~---~~~~~~~~~~~~~~~~i~~d-~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 93 -----GLLVVQTD-GTFEE---IAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp -----EEEEEETT-SCEEE---CCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred -----CEEEEeCC-CCEEE---EEeccCCCccccCCcCEEEC-CCCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 56677865 76521 1 111 122457789998 799988877655 456666665
Q ss_pred CeEEEEEc-CCcEEEEEEc----CCc-eEEEEEcCCCCeeEEEEecC-CCe-----EEEEeecCC-cceeEEEEEecCCC
Q 011452 225 YTMLYSIS-DKNVQEIKIS----PGI-MLLIFTKASGHVPLKILSIE-DGT-----VLKSFNHLL-HRNKKVDFIEQFNE 291 (485)
Q Consensus 225 g~~l~tl~-~~~V~~VafS----pg~-~ll~sss~~~D~tIklWdi~-tG~-----~L~tl~~~~-~~~~~V~f~~~~~~ 291 (485)
++...... ......++|+ |++ .+.++... +..|.+||+. +|+ .+..+.++. .....+++. +++.
T Consensus 162 g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~--~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d-~~G~ 238 (314)
T 1pjx_A 162 GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETP--TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD-EDNN 238 (314)
T ss_dssp SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETT--TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB-TTCC
T ss_pred CCEEEeccCCCCcceEEEecccCCCCCEEEEEECC--CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC-CCCC
Confidence 66543332 2467889999 987 45555332 3689999986 675 334444433 455678875 5565
Q ss_pred EEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCC
Q 011452 292 KLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFR 349 (485)
Q Consensus 292 ~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~ 349 (485)
.+++...++.|.+||.++++.+..+..+...+.+++|+|||+ ++++.. ++.|..|++.
T Consensus 239 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp EEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred EEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence 555556889999999998888777777778899999999999 666666 7899999985
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-12 Score=127.93 Aligned_cols=266 Identities=8% Similarity=-0.071 Sum_probs=177.6
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEee------cCCCCcccceeEEEEeEeccCCcCccccee-e
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVY------ASDNFSSLRCRSTRIEYIRRGKPDAGFALF-E 188 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d------~~~d~stL~~~t~~lw~i~~G~~~~~~~lf-~ 188 (485)
++.++|..+++.+.++..+. .. .++|||||+.|..+... +..+ .++.++|+.+++.....++- .
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~------~~v~viD~~t~~~~~~i~~~~~ 118 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRT------DYVEVFDPVTFLPIADIELPDA 118 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCC------CeEEEEECCCCcEEEEEECCCc
Confidence 89999999999999887643 23 99999999999876532 1112 37888888777663322211 0
Q ss_pred e--ccccCceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEE-EcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEE
Q 011452 189 S--ESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYS-ISDKNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (485)
Q Consensus 189 ~--~~~~~~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~t-l~~~~V~~VafSp-g~~ll~sss~~~D~tIklW 262 (485)
. ....+|..++|+ |||++|..+.. +++|-++| ++++.+.+ +.-.. ++.+.| +...+++.. .|+.+.++
T Consensus 119 ~~~~~g~~p~~~~~s-pDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~--~~~~~~~~~~~~~~~~--~dg~~~~v 192 (373)
T 2mad_H 119 PRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT--CYHIHPGAPSTFYLLC--AQGGLAKT 192 (373)
T ss_pred cccccCCCccceEEC-CCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc--eEEEEeCCCceEEEEc--CCCCEEEE
Confidence 0 012457789998 89999887764 58899999 99999888 75321 245555 333333333 45789999
Q ss_pred ecCCCeEEEEee------cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEeccc-------C---CCceE
Q 011452 263 SIEDGTVLKSFN------HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSRT-------E---FMTPS 324 (485)
Q Consensus 263 di~tG~~L~tl~------~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~g-------h---~~~v~ 324 (485)
|. +|+...... +.........|. ++++.++..+.++++.+.|+.++. .+..+.- . .....
T Consensus 193 d~-~g~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 270 (373)
T 2mad_H 193 DH-AGGAAGAGLVGAMLTAAQNLLTQPAQA-NKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EC-CCcEEEEEeccccccCCcceeecceeE-ecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence 99 998874322 111111123454 445666655577899999997653 2222210 0 11233
Q ss_pred EEEEcCCCcEEEEEe-C----------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCC
Q 011452 325 AFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDP 391 (485)
Q Consensus 325 avaFspdg~llaS~s-D----------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~ 391 (485)
.++|+||++.+..+. + ++|-+.|.. ++.+.++..-. . .+.++|||||+ +|+++..
T Consensus 271 ~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~-----p~~i~~s~Dg~~~l~v~~~------ 338 (373)
T 2mad_H 271 QVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-D-----VDAISVAQDGGPDLYALSA------ 338 (373)
T ss_pred eEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-C-----cCeEEECCCCCeEEEEEcC------
Confidence 478899988766543 2 479999996 89989886432 1 57999999999 7777653
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEe
Q 011452 392 LAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.+++|-++|+.|++.++++
T Consensus 339 ----~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 339 ----GTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ----CCCeEEEEECCCCCEEeee
Confidence 2699999999999999985
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-12 Score=133.14 Aligned_cols=288 Identities=12% Similarity=0.088 Sum_probs=184.6
Q ss_pred cCEEEEEeC-----CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 105 RDIVFALAQ-----SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 105 ~~~ias~s~-----dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
+..|+.... ++++.+.|..|++.+.++..+.. + . +++||||+.|..++.+.+.....=.-.++.+||..+++
T Consensus 44 ~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~ 120 (386)
T 3sjl_D 44 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 120 (386)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe
Confidence 566666655 68999999999999999987544 4 4 99999999987766421100000001479999998888
Q ss_pred cCcccceee-e--ccccCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCC
Q 011452 180 PDAGFALFE-S--ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 180 ~~~~~~lf~-~--~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~ 254 (485)
.....++-. . ....+|..++|+ |||++|..+. .+++|-|+|+++++.+.++.-... ...+..+...+.+.+
T Consensus 121 v~~~I~v~~g~r~~~g~~P~~~a~s-pDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~-- 196 (386)
T 3sjl_D 121 PTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHC-- 196 (386)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEE--
T ss_pred EEEEEECCCccccccCCCCceEEEc-CCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEEC--
Confidence 633222110 0 012367789998 7999766654 378999999999999999863222 122222322221212
Q ss_pred CCeeEEEEecCC-CeEEEEeecCC----ccee-EEEEEecCCCEEEEEeCCCcEEEEECCCCee--EEecc---------
Q 011452 255 GHVPLKILSIED-GTVLKSFNHLL----HRNK-KVDFIEQFNEKLLVKQENENLQILDVRNFEL--TEVSR--------- 317 (485)
Q Consensus 255 ~D~tIklWdi~t-G~~L~tl~~~~----~~~~-~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~--~~~l~--------- 317 (485)
.|+++-+.++.+ |+...+...+. ..+. ..+|..+ +++++..+.+++|.+.|+.++.. +....
T Consensus 197 ~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~-dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~ 275 (386)
T 3sjl_D 197 RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQK-AGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERAD 275 (386)
T ss_dssp TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETT-TTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHT
T ss_pred CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcC-CCcEEEEeCCCEEEEEECCCCcceeecceeccccccccc
Confidence 235566666665 66543332111 1111 2466544 45777777789999999987642 22111
Q ss_pred c-CCCceEEEEEcCCCcEEEEEe-C----------CcEEEEeCC-CcEEEEee-cCCCCCCCCCeeEEEECCCCC-EEEE
Q 011452 318 T-EFMTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFE-DHLLWHPDCNTNNIYITSDQD-LIIS 382 (485)
Q Consensus 318 g-h~~~v~avaFspdg~llaS~s-D----------~TIklWd~~-G~ll~tl~-gH~~~~~~~~v~svafSpDG~-~LaS 382 (485)
+ .......++++|+++.+--.. + ++|-+-|+. ++.+.++. ++. +++|+|||||+ +|.+
T Consensus 276 g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~-------~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 276 GWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE-------IDSINVSQDEKPLLYA 348 (386)
T ss_dssp TEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE-------ECEEEECSSSSCEEEE
T ss_pred cccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCC-------cceEEECCCCCeEEEE
Confidence 0 011222467798888766653 1 478888995 99988875 332 78999999997 7776
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.+. .+++|-++|..|++.++++..-
T Consensus 349 tn~----------~~~~VsViD~~t~k~~~~i~~~ 373 (386)
T 3sjl_D 349 LST----------GDKTLYIHDAESGEELRSVNQL 373 (386)
T ss_dssp EET----------TTTEEEEEETTTCCEEEEECCC
T ss_pred EcC----------CCCeEEEEECCCCcEEEEecCC
Confidence 654 2699999999999999999653
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-12 Score=124.70 Aligned_cols=221 Identities=10% Similarity=0.030 Sum_probs=152.1
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl 273 (485)
.+....|++.++.++.++..++.|.+||.++++....-....|.+++++|++.++++.. ..|.+||.++|+.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v~~~----~gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEEEEC----CCEEEEECCCCcEEEEe
Confidence 34567888434777788878899999999988754322356899999998777777642 24999999999864322
Q ss_pred ec---C-CcceeEEEEEecCCCEEEEEeC----CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE-EEEe-CCcE
Q 011452 274 NH---L-LHRNKKVDFIEQFNEKLLVKQE----NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTV 343 (485)
Q Consensus 274 ~~---~-~~~~~~V~f~~~~~~~lls~s~----D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll-aS~s-D~TI 343 (485)
.. + ...+..+++. +++..+++... ..+.+||.+.+++..... .+...++.++|+|||+.| ++.+ ++.|
T Consensus 126 ~~~~~~~~~~~~~i~~d-~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMH-PSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRL 203 (326)
T ss_dssp CSSTTCTTEEEEEEEEC-TTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred eCCCCCCCCCCCCEEEC-CCCCEEEEeCCCcCCCCceEEEEEeCCcEEEee-CCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence 21 1 1345678875 55554443332 134555554466655433 344578899999999865 5555 8899
Q ss_pred EEEeCC---C-c-----EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 344 AVWNFR---G-E-----LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 344 klWd~~---G-~-----ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.+||++ | + .+..+.++... ..++++.+||.+.++... ++.|.+||. +|+.+.++
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~-----p~gi~~d~~G~lwva~~~-----------~~~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGG-----MDGSVCDAEGHIWNARWG-----------EGAVDRYDT-DGNHIARY 266 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSE-----EEEEEECTTSCEEEEEET-----------TTEEEEECT-TCCEEEEE
T ss_pred EEEEcccccCCcccCceEEEECCCCCCC-----CCeeEECCCCCEEEEEeC-----------CCEEEEECC-CCCEEEEE
Confidence 999973 6 3 23344333222 678999999998887654 578999998 68988888
Q ss_pred cCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc-CCCCEEEEec
Q 011452 415 RASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD-EDRNEIYTGN 475 (485)
Q Consensus 415 ~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs-pDg~~LaSgs 475 (485)
..+. ..+++++|+ ||++.|+.++
T Consensus 267 ~~~~--------------------------------------~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 267 EVPG--------------------------------------KQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ECSC--------------------------------------SBEEEEEEESTTSCEEEEEE
T ss_pred ECCC--------------------------------------CCcEEEEEecCCCCEEEEEe
Confidence 7654 278999999 9998775544
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=137.81 Aligned_cols=221 Identities=10% Similarity=0.067 Sum_probs=155.9
Q ss_pred cCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEc---------CCcEEEEEEcCCceEEEEEcCC---CCee
Q 011452 193 KWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSIS---------DKNVQEIKISPGIMLLIFTKAS---GHVP 258 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~---------~~~V~~VafSpg~~ll~sss~~---~D~t 258 (485)
.+|..|+|+ ++|+++++.. .++.++||.+.+|++. .+. -..+..|+|+|++.|.+..... .+..
T Consensus 17 ~~p~~va~~-~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~ 94 (343)
T 2qe8_A 17 LAPGNITLT-PDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPK 94 (343)
T ss_dssp SCEEEEEEC-TTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCe
Confidence 578899998 7999999864 2344788887777643 332 1379999999988887764320 0358
Q ss_pred EEEEecCCCeEEEEeecC------CcceeEEEEEecCCCEEEEE-e---CCCcEEEEECCCCeeEEecccCCCc-eEEEE
Q 011452 259 LKILSIEDGTVLKSFNHL------LHRNKKVDFIEQFNEKLLVK-Q---ENENLQILDVRNFELTEVSRTEFMT-PSAFI 327 (485)
Q Consensus 259 IklWdi~tG~~L~tl~~~------~~~~~~V~f~~~~~~~lls~-s---~D~tIkIWDv~tg~~~~~l~gh~~~-v~ava 327 (485)
|.+||+++|++++++... ......|+|. ++++.+.++ . .++.|.+||+.+++..+++.+|... ...+.
T Consensus 95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd-~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~ 173 (343)
T 2qe8_A 95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVD-LIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID 173 (343)
T ss_dssp EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEE-TTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred EEEEECCCCeEEEEEECChhhcccccccceEEEe-cCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence 999999999998887632 1234688886 445666555 4 6899999999999998888776322 21256
Q ss_pred EcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 328 FLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 328 Fspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
|+++|+.|.+.+ |++++.|.. . ++.|+|||||++|..+.. ++. +||.+.
T Consensus 174 ~~~~g~~~~~~~~~g~~~~~~~-------------~-----~~gia~s~dg~~ly~~~~-----------~~~-~l~~~~ 223 (343)
T 2qe8_A 174 LVIDGVPVQIGQPDGTVIRPHL-------------G-----VNGIVLDAENEWLYLSPM-----------HST-SMYRIK 223 (343)
T ss_dssp CEETTEECBEECTTSCEECCCC-------------C-----EEEEEECTTSCEEEEEES-----------SCS-EEEEEE
T ss_pred eeECCEEEEeccCCCceeceec-------------c-----cceeEeccCCCEEEEEeC-----------CCC-eEEEEE
Confidence 788999888888 988877741 1 789999999999988765 232 566654
Q ss_pred CCeEE----------E--EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEe
Q 011452 407 TGKCL----------A--KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTG 474 (485)
Q Consensus 407 TGk~l----------~--tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSg 474 (485)
+.... . +..++. .....+++++||+.+++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~g~~--------------------------------------g~pdgia~d~~G~l~va~ 265 (343)
T 2qe8_A 224 SADLSNLQLTDAELGSKIERYSEK--------------------------------------PICDGISIDKDHNIYVGD 265 (343)
T ss_dssp HHHHTCTTCCHHHHHTTCEEEEEC--------------------------------------CSCSCEEECTTCCEEEEE
T ss_pred HHHhcCCCCChhhhhcceEecccC--------------------------------------CCCceEEECCCCCEEEEc
Confidence 31100 0 000111 134568999999999999
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
..++.|.+||
T Consensus 266 ~~~~~V~~~d 275 (343)
T 2qe8_A 266 LAHSAIGVIT 275 (343)
T ss_dssp GGGTEEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999997
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=138.54 Aligned_cols=291 Identities=10% Similarity=0.070 Sum_probs=188.1
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA---- 212 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s---- 212 (485)
+..-.+...|+++.+-.+... .. ++ ..++.+-|..+++... .+..+ ..|. ++|+ |||++|..++
T Consensus 33 ~~~~~~~~~pd~~~vyV~~~~-~~---~~-~~~V~ViD~~t~~v~~---~I~vG--~~P~-va~s-pDG~~lyVan~~~~ 100 (386)
T 3sjl_D 33 EPRILEAPAPDARRVYVNDPA-HF---AA-VTQQFVIDGEAGRVIG---MIDGG--FLPN-PVVA-DDGSFIAHASTVFS 100 (386)
T ss_dssp CCCBCCCCCCCTTEEEEEECG-GG---CS-SEEEEEEETTTTEEEE---EEEEC--SSCE-EEEC-TTSSCEEEEEEEEE
T ss_pred ccceeeccCCCCCEEEEEcCc-cc---CC-CCEEEEEECCCCeEEE---EEECC--CCCc-EEEC-CCCCEEEEEccccc
Confidence 333345668999987765431 00 00 1478888888877632 22222 2354 9998 7999775543
Q ss_pred ------CCCcEEEeecCCCeEEEEEc-C--------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 213 ------QDSIYKVFDLKNYTMLYSIS-D--------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 213 ------~D~tiKlWdl~~g~~l~tl~-~--------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
.+++|.+||.++++.+.++. + ..-..++|||+++.|..+....+.+|.++|+++++.++++.-
T Consensus 101 r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v-- 178 (386)
T 3sjl_D 101 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-- 178 (386)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC--
Confidence 36899999999999988874 1 134569999866654443322347999999999999999963
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCC-CeeEEecccCCC----ce-EEEEE-cCCCcEEEEEeCCcEEEEeCCC
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRN-FELTEVSRTEFM----TP-SAFIF-LYENQLFLTFRNRTVAVWNFRG 350 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~t-g~~~~~l~gh~~----~v-~avaF-spdg~llaS~sD~TIklWd~~G 350 (485)
... ...+ +.....+++.+.|+++-+.++.+ ++...+...+++ .+ ...+| .++|+++..+.+++|.+-|+.+
T Consensus 179 ~g~-~~~~-P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~ 256 (386)
T 3sjl_D 179 PDC-YHIF-PTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSS 256 (386)
T ss_dssp CSE-EEEE-EEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTT
T ss_pred CCc-ceee-cCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCC
Confidence 111 1222 33445666778899999999986 665332222221 11 11355 4899876644489999999975
Q ss_pred cE---EEEee---c---CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 351 EL---VTSFE---D---HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 351 ~l---l~tl~---g---H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
+. +..++ . -..|.|.. ...++++|+++.|.-.-.+..++ --....++|-+-|+.|+|.+++|.--.
T Consensus 257 ~~~~v~~~~~~~~~~~~~~g~~p~g-~q~~a~~~~~~~lyV~~~~~~~~-~hk~~~~~V~viD~~t~kv~~~i~vg~--- 331 (386)
T 3sjl_D 257 GDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDEW-RHKTASRFVVVLDAKTGERLAKFEMGH--- 331 (386)
T ss_dssp SSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCTT-CTTSCEEEEEEEETTTCCEEEEEEEEE---
T ss_pred CcceeecceeccccccccccccCCC-cceeeECCCCCeEEEEecccccc-ccCCCCCEEEEEECCCCeEEEEEECCC---
Confidence 43 22222 0 01233333 34688999999988865311000 000113579999999999999986422
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEecC-CCcEEEcc
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGNR-HGLVHVWS 484 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs~-DgtVklWd 484 (485)
.+++|+|||||+ +||+.+. +++|.+.|
T Consensus 332 ------------------------------------~~~~lavs~D~~~~ly~tn~~~~~VsViD 360 (386)
T 3sjl_D 332 ------------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHD 360 (386)
T ss_dssp ------------------------------------EECEEEECSSSSCEEEEEETTTTEEEEEE
T ss_pred ------------------------------------CcceEEECCCCCeEEEEEcCCCCeEEEEE
Confidence 678999999997 7888765 89999887
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.53 E-value=6.7e-12 Score=129.48 Aligned_cols=233 Identities=9% Similarity=0.045 Sum_probs=162.4
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC--
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-- 215 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~-- 215 (485)
....|+++|+|+.+++-. .+ +.++.+++..|++. .+... ...+. ++|+ ++|+.|..+..++
T Consensus 132 ~P~~la~d~~g~lyv~d~----~~------~~I~~id~~~g~~~---~~~~~--~~~~~-ia~~-~~g~~l~~~d~~~~~ 194 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQR----DD------PRVRLISVDDNKVT---TVHPG--FKGGK-PAVT-KDKQRVYSIGWEGTH 194 (409)
T ss_dssp CEEEEEECSTTEEEEEET----TT------TEEEEEETTTTEEE---EEEET--CCBCB-CEEC-TTSSEEEEEBSSTTC
T ss_pred CceEEEEeCCCCEEEEec----CC------CcEEEEECCCCEEE---Eeecc--CCCCc-eeEe-cCCCcEEEEecCCCc
Confidence 578999999999665522 33 58889997667652 22222 23445 9997 7898887777665
Q ss_pred cEEEeecCCCeEEEEE------cCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEE----eecCCcce-e-E
Q 011452 216 IYKVFDLKNYTMLYSI------SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS----FNHLLHRN-K-K 282 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl------~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~t----l~~~~~~~-~-~ 282 (485)
.|.+||..++.....+ ....+++++|+| ++.|.++ +.++.|..||.++++.... ..++.... . .
T Consensus 195 ~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~---d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 195 TVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFV---DSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp EEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEE---CTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred eEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEE---ECCCcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 7888888766554455 345788999999 7887774 3357999999988874332 22333333 3 8
Q ss_pred EEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccC---------------CCceEEEEEcCCCcEEEEEe--CCcEE
Q 011452 283 VDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTE---------------FMTPSAFIFLYENQLFLTFR--NRTVA 344 (485)
Q Consensus 283 V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh---------------~~~v~avaFspdg~llaS~s--D~TIk 344 (485)
++|. |+++.|.++ ..++.|+.||.... +.++.++ ...+..++|+|+|+++++-+ ++.|+
T Consensus 272 ia~~-p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~ 348 (409)
T 3hrp_A 272 LIYY-FVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLR 348 (409)
T ss_dssp EEEE-TTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEE
T ss_pred EEEe-CCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEE
Confidence 9997 555677666 58899999998743 3333343 36799999999999988875 78999
Q ss_pred EEeCC-CcEEEEeecCCCC---C-------CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 345 VWNFR-GELVTSFEDHLLW---H-------PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 345 lWd~~-G~ll~tl~gH~~~---~-------~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
.||.. |+ +.++.++... . ......+|+++|||.++++-.. .+.|+..++
T Consensus 349 ~~~~~~G~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~-----------n~~Ir~i~~ 408 (409)
T 3hrp_A 349 KLDILDGY-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW-----------GKAIRKYAV 408 (409)
T ss_dssp EEETTTTE-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST-----------TCEEEEEEE
T ss_pred EEECCCCE-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC-----------CCeEEEEEe
Confidence 99964 65 5677776110 0 0012689999999998888654 578877654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4.5e-13 Score=146.38 Aligned_cols=233 Identities=11% Similarity=0.103 Sum_probs=156.1
Q ss_pred CceEEEEeCCCCeEEEEe-----eCCCcEEEeecCCCeEEEE-EcCCcEEEEEEcCCceEEEEEcCCC-----------C
Q 011452 194 WPGFVEFDDVNGKVLTYS-----AQDSIYKVFDLKNYTMLYS-ISDKNVQEIKISPGIMLLIFTKASG-----------H 256 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~-----s~D~tiKlWdl~~g~~l~t-l~~~~V~~VafSpg~~ll~sss~~~-----------D 256 (485)
.+..++|| |||+.||++ +.+.+|+|||+++|+.+.. +.......++|| |+..+.+.+.+. .
T Consensus 130 ~l~~~~~S-pDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~ 207 (693)
T 3iuj_A 130 ALDQLSFS-RDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ 207 (693)
T ss_dssp EEEEEEEC-TTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred EEEEEEEC-CCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence 34578898 899999964 3447899999999996543 322223578899 555444444331 1
Q ss_pred eeEEEEecCCCe----EEEEeec-CCcceeEEEEEecCCCEEEEEe----CCCcEEEEECCCCe-eEEecccCCCceEEE
Q 011452 257 VPLKILSIEDGT----VLKSFNH-LLHRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNFE-LTEVSRTEFMTPSAF 326 (485)
Q Consensus 257 ~tIklWdi~tG~----~L~tl~~-~~~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg~-~~~~l~gh~~~v~av 326 (485)
..|++|++.+++ ++..... |......+.|+ ||+.+|+... .+..|.+||+.+++ ....+..+.......
T Consensus 208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~ 286 (693)
T 3iuj_A 208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVT-EDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286 (693)
T ss_dssp CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEEC-TTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE
T ss_pred cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEc-CCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE
Confidence 459999998875 3444443 43445688885 7888887753 33589999998874 445555677777666
Q ss_pred EEcCCCcEEEEEe-C---CcEEEEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC-
Q 011452 327 IFLYENQLFLTFR-N---RTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG- 398 (485)
Q Consensus 327 aFspdg~llaS~s-D---~TIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg- 398 (485)
..++++++++... | ..|.+||++ ++. .++|..|... +. .|+|+|+.|+....+ ++
T Consensus 287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~--~~s~~g~~lv~~~~~----------~g~ 349 (693)
T 3iuj_A 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ-----VL--TVHSGSGYLFAEYMV----------DAT 349 (693)
T ss_dssp EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS-----CE--EEEEETTEEEEEEEE----------TTE
T ss_pred EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC-----EE--EEEEECCEEEEEEEE----------CCe
Confidence 4455556666665 4 578899996 554 4677777654 44 899999999887762 33
Q ss_pred -eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 399 -SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 399 -tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
.|++||+. |+.+..+.-... ..|..+.++||++.|+-...+
T Consensus 350 ~~l~~~d~~-g~~~~~l~~p~~-------------------------------------~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 350 ARVEQFDYE-GKRVREVALPGL-------------------------------------GSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp EEEEEECTT-SCEEEEECCSSS-------------------------------------SEEEECCCCTTCSCEEEEEEC
T ss_pred eEEEEEECC-CCeeEEeecCCC-------------------------------------ceEEeeecCCCCCEEEEEecC
Confidence 79999987 555555543210 156678888898877665544
Q ss_pred ----CcEEEcc
Q 011452 478 ----GLVHVWS 484 (485)
Q Consensus 478 ----gtVklWd 484 (485)
++|.+||
T Consensus 392 ~~tP~~l~~~d 402 (693)
T 3iuj_A 392 YAQPPTLYRFE 402 (693)
T ss_dssp SSSCCEEEEEC
T ss_pred CCCCCEEEEEE
Confidence 6777776
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-12 Score=141.44 Aligned_cols=280 Identities=12% Similarity=0.086 Sum_probs=183.7
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcc----------cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~----------~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
.+++|+.++.++.+..+|.+||+.+=........ .-+++++ ++..|+.++ .| ..+..+
T Consensus 69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~----~d------g~l~Al 136 (689)
T 1yiq_A 69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGV----LD------GRLEAI 136 (689)
T ss_dssp ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TT------SEEEEE
T ss_pred ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEc----cC------CEEEEE
Confidence 4888999999999999999999988766432110 1123333 355666644 23 467778
Q ss_pred EeccCCcCcccceeeeccc---cCceEEEEeC--CCCeEEEEee-----CCCcEEEeecCCCeEEEEEcC---C------
Q 011452 174 YIRRGKPDAGFALFESESL---KWPGFVEFDD--VNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD---K------ 234 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~---~~~~~V~Fs~--pnG~~Las~s-----~D~tiKlWdl~~g~~l~tl~~---~------ 234 (485)
|..+|++ +|+.... .....+..++ .+|++++..+ .|+.|..||+++|+++.++.. .
T Consensus 137 Da~TG~~-----~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~ 211 (689)
T 1yiq_A 137 DAKTGQR-----AWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPE 211 (689)
T ss_dssp ETTTCCE-----EEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCC
T ss_pred ECCCCCE-----eeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccc
Confidence 8889987 5554221 0111111110 1677777554 379999999999999876631 0
Q ss_pred -----------------------cE-EEEEEcC-CceEEEEEcCCC-------------C----eeEEEEecCCCeEEEE
Q 011452 235 -----------------------NV-QEIKISP-GIMLLIFTKASG-------------H----VPLKILSIEDGTVLKS 272 (485)
Q Consensus 235 -----------------------~V-~~VafSp-g~~ll~sss~~~-------------D----~tIklWdi~tG~~L~t 272 (485)
.+ ..++++| ++++.+. ..+. | ..|.-||.+||+.+..
T Consensus 212 ~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~-~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~ 290 (689)
T 1yiq_A 212 GKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIG-VGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWH 290 (689)
T ss_dssp SHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEE-CCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEE
T ss_pred cccccccccccCCceeeecCCCCccccceeEcCCCCEEEEe-CCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEe
Confidence 11 2578887 4444443 3221 0 1499999999999998
Q ss_pred eecCCccee------EEEEE--ecCCC---EEEEEeCCCcEEEEECCCCeeEEeccc-CCCc------------------
Q 011452 273 FNHLLHRNK------KVDFI--EQFNE---KLLVKQENENLQILDVRNFELTEVSRT-EFMT------------------ 322 (485)
Q Consensus 273 l~~~~~~~~------~V~f~--~~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~g-h~~~------------------ 322 (485)
+....+..+ .+.+. ..++. .++.++.|+.+.++|.+||+++....- +..+
T Consensus 291 ~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~ 370 (689)
T 1yiq_A 291 YQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENA 370 (689)
T ss_dssp EESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHH
T ss_pred eecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhc
Confidence 874212111 11111 12232 466678999999999999998732110 0000
Q ss_pred --------------------eEEEEEcCCCcEEEEEe-------------------------------------------
Q 011452 323 --------------------PSAFIFLYENQLFLTFR------------------------------------------- 339 (485)
Q Consensus 323 --------------------v~avaFspdg~llaS~s------------------------------------------- 339 (485)
-..++|+|+.++|....
T Consensus 371 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~ 450 (689)
T 1yiq_A 371 AYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMA 450 (689)
T ss_dssp CTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHH
T ss_pred cccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCC
Confidence 01267899988877652
Q ss_pred ---CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 340 ---NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 340 ---D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+++|..||+. |+.+-++..+..+ +.-.++..|.+++.++. ||.|+.||..||+.|.+++
T Consensus 451 ~~~~g~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~gt~-----------dg~l~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 451 KSWSGKLIAWDPVKQQAAWEVPYVTIF------NGGTLSTAGNLVFEGSA-----------DGRVIAYAADTGEKLWEQP 513 (689)
T ss_dssp TTCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEE
T ss_pred CCcceeEEEEECCCCCeEeEccCCCCc------cCccceECCCEEEEECC-----------CCcEEEEECCCCccceeee
Confidence 2779999995 9999988877543 33466778889999886 7999999999999999997
Q ss_pred CCC
Q 011452 416 ASN 418 (485)
Q Consensus 416 gH~ 418 (485)
...
T Consensus 514 ~~~ 516 (689)
T 1yiq_A 514 AAS 516 (689)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-12 Score=123.01 Aligned_cols=226 Identities=8% Similarity=0.066 Sum_probs=157.0
Q ss_pred ccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCe-EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 192 LKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~-~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
..|+....|+ ++|+ ++.++..++.|..|+. +++ ..+......+..++++|++.++++... +..|.+|+.+ |+.
T Consensus 44 ~~~~egp~~~-~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~--~~~v~~~~~~-g~~ 118 (305)
T 3dr2_A 44 ATWSEGPAWW-EAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHG--RRAITRSDAD-GQA 118 (305)
T ss_dssp CSSEEEEEEE-GGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETT--TTEEEEECTT-SCE
T ss_pred CcCccCCeEe-CCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECC--CCEEEEECCC-CCE
Confidence 4567788998 6887 7778888999999998 454 334445678999999998888776443 3689999985 774
Q ss_pred EEEeecC----CcceeEEEEEecCCCEEEE----EeC-------------CCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 270 LKSFNHL----LHRNKKVDFIEQFNEKLLV----KQE-------------NENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 270 L~tl~~~----~~~~~~V~f~~~~~~~lls----~s~-------------D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
..-.... ......+++. +++..+++ +.. .+.|..+|..+++..... +...++.++|
T Consensus 119 ~~~~~~~~~~~~~~~~~i~~d-~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~ 195 (305)
T 3dr2_A 119 HLLVGRYAGKRLNSPNDLIVA-RDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAF 195 (305)
T ss_dssp EEEECEETTEECSCCCCEEEC-TTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEE
T ss_pred EEEEeccCCCccCCCCCEEEC-CCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEE
Confidence 3322111 1224468875 55554443 221 256788888888776554 5567899999
Q ss_pred cCCCcEEEEEe-C------CcEEEEeCCCcEEE---EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 329 LYENQLFLTFR-N------RTVAVWNFRGELVT---SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 329 spdg~llaS~s-D------~TIklWd~~G~ll~---tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
+|||+.|..+. + +.|.+|++.+.-+. .+..-.. ....++++.+||.+.++. . +
T Consensus 196 spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~----~~pdgi~~d~~G~lwv~~-~------------~ 258 (305)
T 3dr2_A 196 SPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD----GLPDGFCVDRGGWLWSSS-G------------T 258 (305)
T ss_dssp CTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS----SCCCSEEECTTSCEEECC-S------------S
T ss_pred cCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC----CCCCeEEECCCCCEEEec-C------------C
Confidence 99999665554 5 78999998632122 2211111 114579999999977764 2 3
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCC
Q 011452 399 SINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHG 478 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~Dg 478 (485)
.|.+||. +|+.+.++..+. .+.+++|+||++.|+.++.++
T Consensus 259 gv~~~~~-~g~~~~~~~~~~---------------------------------------~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 259 GVCVFDS-DGQLLGHIPTPG---------------------------------------TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp EEEEECT-TSCEEEEEECSS---------------------------------------CCCEEEECTTSCEEEEEETTE
T ss_pred cEEEECC-CCCEEEEEECCC---------------------------------------ceeEEEEeCCCCEEEEEcCCe
Confidence 4999997 699998887543 567899999999999988888
Q ss_pred cEEE
Q 011452 479 LVHV 482 (485)
Q Consensus 479 tVkl 482 (485)
..++
T Consensus 299 l~~~ 302 (305)
T 3dr2_A 299 LWML 302 (305)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7765
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.52 E-value=2e-11 Score=118.72 Aligned_cols=226 Identities=12% Similarity=0.052 Sum_probs=158.5
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
....-.+..|+|+++.|..+. ... +.+..|+...|+. ..+.. -..+..++|+ ++|+++++. +
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d--~~~-------~~i~~~d~~~~~~----~~~~~--~~~~~~i~~~-~dG~l~v~~--~ 72 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVD--IPA-------KKVCRWDSFTKQV----QRVTM--DAPVSSVALR-QSGGYVATI--G 72 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTTCCE----EEEEC--SSCEEEEEEB-TTSSEEEEE--T
T ss_pred CCccccCCeEECCCCEEEEEE--CCC-------CEEEEEECCCCcE----EEEeC--CCceEEEEEC-CCCCEEEEE--C
Confidence 445677899999877766543 222 4788888766654 23332 2467789998 799977654 6
Q ss_pred CcEEEeecCCCeEEEEE--c----CCcEEEEEEcCCceEEEEEcCCC-------CeeEEEEecC-CCeEEEEeecCCcce
Q 011452 215 SIYKVFDLKNYTMLYSI--S----DKNVQEIKISPGIMLLIFTKASG-------HVPLKILSIE-DGTVLKSFNHLLHRN 280 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl--~----~~~V~~VafSpg~~ll~sss~~~-------D~tIklWdi~-tG~~L~tl~~~~~~~ 280 (485)
..|.+||+++++..... . ...+++++++|++.+.++..... ...-+||.+. +|+...... +....
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~-~~~~p 151 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFD-QVDIS 151 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEE-EESBE
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEee-ccccc
Confidence 78999999988754322 1 13589999999777766543211 1234566554 455544333 33455
Q ss_pred eEEEEEecCCCEEEEE-eCCCcEEEEEC--CCCee-----EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 281 KKVDFIEQFNEKLLVK-QENENLQILDV--RNFEL-----TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 281 ~~V~f~~~~~~~lls~-s~D~tIkIWDv--~tg~~-----~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G 350 (485)
..++|+ |++..|.+. +.++.|.+||+ .+|++ ...+..+...+..+++.++|++.++.. ++.|..||.+ |
T Consensus 152 ngi~~s-pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 152 NGLDWS-LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EEEEEC-TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred cceEEc-CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 689986 677777665 57899999997 56654 222334456789999999999999988 8899999996 9
Q ss_pred cEEEEeecCCCCCCCCCeeEEEEC-CCCCEEEEEec
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYCK 385 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafS-pDG~~LaS~s~ 385 (485)
+++.++..+... +.+++|+ ||++.|...+.
T Consensus 231 ~~~~~i~~p~~~-----~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 231 KRLQTVKLPVDK-----TTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp CEEEEEECSSSB-----EEEEEEESGGGCEEEEEEB
T ss_pred eEEEEEECCCCC-----ceEEEEeCCCCCEEEEEcC
Confidence 999999877544 8999998 99987766654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=3e-11 Score=132.86 Aligned_cols=278 Identities=13% Similarity=0.082 Sum_probs=185.1
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCc----------ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTAD----------EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~----------~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
.+++|+.++.++.+..+|.+||+.+=....... ..-+++++ ++..|+.++. + ..+..+
T Consensus 76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----d------g~l~al 143 (677)
T 1kb0_A 76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----D------GRLIAL 143 (677)
T ss_dssp ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----T------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----C------CEEEEE
Confidence 488899999999999999999998866544211 11244555 4556666442 3 367778
Q ss_pred EeccCCcCcccceeeeccc-c-----Cce-EEEEeCCCCeEEEEee-----CCCcEEEeecCCCeEEEEEcC-C-c----
Q 011452 174 YIRRGKPDAGFALFESESL-K-----WPG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISD-K-N---- 235 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~-~-----~~~-~V~Fs~pnG~~Las~s-----~D~tiKlWdl~~g~~l~tl~~-~-~---- 235 (485)
|..+|++ +|+.... . .+. ..... ++++++.++ .|+.|..+|+++|+++.++.. . .
T Consensus 144 D~~tG~~-----~W~~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~ 216 (677)
T 1kb0_A 144 DAATGKE-----VWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKP 216 (677)
T ss_dssp ETTTCCE-----EEEEETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSC
T ss_pred ECCCCCE-----EeeecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccc
Confidence 8888987 4554211 0 011 11222 577766554 279999999999999877642 0 0
Q ss_pred ---------------------------E-EEEEEcC-CceEEEEEcCCC-------------C----eeEEEEecCCCeE
Q 011452 236 ---------------------------V-QEIKISP-GIMLLIFTKASG-------------H----VPLKILSIEDGTV 269 (485)
Q Consensus 236 ---------------------------V-~~VafSp-g~~ll~sss~~~-------------D----~tIklWdi~tG~~ 269 (485)
+ ..++++| ++++.+. ..+. | .+|..+|.+||+.
T Consensus 217 ~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~-~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~ 295 (677)
T 1kb0_A 217 FEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVG-TGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKY 295 (677)
T ss_dssp CSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEE-CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred ccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEE-CCCCccccCCCCCccCCCCeeeEEEEEEECCCCCE
Confidence 1 2478887 4554443 3221 1 2599999999999
Q ss_pred EEEeecCCcc------eeEEEEE--ecCC---CEEEEEeCCCcEEEEECCCCeeEEecccCC-Cce--------------
Q 011452 270 LKSFNHLLHR------NKKVDFI--EQFN---EKLLVKQENENLQILDVRNFELTEVSRTEF-MTP-------------- 323 (485)
Q Consensus 270 L~tl~~~~~~------~~~V~f~--~~~~---~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-~~v-------------- 323 (485)
+..+....+. .....+. ..++ ..+++++.++.|.++|.+||+++....-.. .+.
T Consensus 296 ~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~ 375 (677)
T 1kb0_A 296 KWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAA 375 (677)
T ss_dssp EEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGG
T ss_pred EEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccc
Confidence 9988742221 1111111 1244 356667899999999999999876543110 000
Q ss_pred --------------------EEEEEcCCCcEEEEEe-C------------------------------------------
Q 011452 324 --------------------SAFIFLYENQLFLTFR-N------------------------------------------ 340 (485)
Q Consensus 324 --------------------~avaFspdg~llaS~s-D------------------------------------------ 340 (485)
..++|+|++.++.... +
T Consensus 376 ~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 455 (677)
T 1kb0_A 376 ARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKP 455 (677)
T ss_dssp GGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCC
T ss_pred cCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCC
Confidence 1468899988887653 3
Q ss_pred -CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 341 -RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 341 -~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++|..||+. |+.+-++.... . +++..++++|.+++.++. ||++++||+.||+++.++.-..
T Consensus 456 ~g~l~A~D~~tG~~~W~~~~~~-~-----~~~g~~~~~g~~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~~ 518 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAAWSVEHVS-P-----WNGGTLTTAGNVVFQGTA-----------DGRLVAYHAATGEKLWEAPTGT 518 (677)
T ss_dssp EEEEEEEETTTTEEEEEEEESS-S-----CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred ccEEEEEeCCCCcEEeecCCCC-C-----CcCcceEeCCCEEEEECC-----------CCcEEEEECCCCceeeeeeCCC
Confidence 789999995 99988886433 2 455667888889998876 7999999999999999997544
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-10 Score=114.57 Aligned_cols=223 Identities=11% Similarity=-0.001 Sum_probs=153.5
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcE
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIY 217 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~ti 217 (485)
...+.+|+|+++.|..+.. .+ ..+..|+...|+. ..+.. -..+.+++|+ ++|++++.. .+ -|
T Consensus 50 ~~egp~~~~~~~~l~~~d~---~~------~~i~~~d~~~~~~----~~~~~--~~~v~~i~~~-~dg~l~v~~-~~-gl 111 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNI---LE------RELHELHLASGRK----TVHAL--PFMGSALAKI-SDSKQLIAS-DD-GL 111 (326)
T ss_dssp BEEEEEEETTTTEEEEEEG---GG------TEEEEEETTTTEE----EEEEC--SSCEEEEEEE-ETTEEEEEE-TT-EE
T ss_pred CCcCCeEeCCCCEEEEEEC---CC------CEEEEEECCCCcE----EEEEC--CCcceEEEEe-CCCeEEEEE-CC-CE
Confidence 4567889999777766442 12 4788888766654 22332 2356789998 799988865 34 48
Q ss_pred EEeecCCCeEEEEEc------CCcEEEEEEcCCceEEEEEcCC--CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 218 KVFDLKNYTMLYSIS------DKNVQEIKISPGIMLLIFTKAS--GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 218 KlWdl~~g~~l~tl~------~~~V~~VafSpg~~ll~sss~~--~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
.+||+++++...... ...+++++++|++.+.++.... .....+||.+.+|+...... +......++|+ ++
T Consensus 112 ~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~i~~s-~d 189 (326)
T 2ghs_A 112 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSICFS-PD 189 (326)
T ss_dssp EEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEEEEC-TT
T ss_pred EEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCcEEEeeC-CCcccCCeEEc-CC
Confidence 999999888543222 1358999999977777664321 01234455444676543322 22345688886 67
Q ss_pred CCEEEEE-eCCCcEEEEECC--CC-ee-----EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecC
Q 011452 290 NEKLLVK-QENENLQILDVR--NF-EL-----TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDH 359 (485)
Q Consensus 290 ~~~lls~-s~D~tIkIWDv~--tg-~~-----~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH 359 (485)
+..|.++ +.++.|.+||+. +| ++ ...+.++...+..+++.++|.++++.. ++.|.+||.+|+++.++..+
T Consensus 190 g~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~g~~~~~i~~~ 269 (326)
T 2ghs_A 190 GTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVP 269 (326)
T ss_dssp SCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECS
T ss_pred CCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCCCCEEEEEECC
Confidence 7777665 578999999986 67 32 333444556788999999999998887 78999999999999888876
Q ss_pred CCCCCCCCeeEEEEC-CCCCEEEEEec
Q 011452 360 LLWHPDCNTNNIYIT-SDQDLIISYCK 385 (485)
Q Consensus 360 ~~~~~~~~v~svafS-pDG~~LaS~s~ 385 (485)
... +.+++|+ ||++.|..++.
T Consensus 270 ~~~-----~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 270 GKQ-----TTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CSB-----EEEEEEESTTSCEEEEEEB
T ss_pred CCC-----cEEEEEecCCCCEEEEEec
Confidence 544 8999998 99987755553
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-14 Score=145.20 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=109.3
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc-ee-
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR-NK- 281 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~-~~- 281 (485)
++.+|..++.|++|..||+++|+++.++....+.+..+.+++.+++.+ +.|+.|..||.++|+.+..++.+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~~--s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~ 85 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD--PNDGSLYTLGSKNNEGLTKLPFTIPELVQA 85 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEEC--TTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEEe--CCCCEEEEEECCCCceeeeeeccCcccccc
Confidence 456777788999999999999999888765555555556566444443 35589999999999998887643221 11
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecC
Q 011452 282 KVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH 359 (485)
...+ ..++.+++++.|++|..||.++|+++..+..+. .+.++|++.+++.++ |++|..||.+ |+++.+++.+
T Consensus 86 sp~~--~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~ 159 (369)
T 2hz6_A 86 SPCR--SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF 159 (369)
T ss_dssp CSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE
T ss_pred CceE--ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc
Confidence 1111 136678888899999999999999988776553 245678888888888 9999999995 9987776543
Q ss_pred CCCCCCCCeeEEEECCCC---CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 360 LLWHPDCNTNNIYITSDQ---DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG---~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
. ....++++++ ..++.++. ||.|..||..||+++.++.-
T Consensus 160 ~-------~~~~~~~~~~~~~~~v~~~~~-----------dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 160 D-------YAASLPEDDVDYKMSHFVSNG-----------DGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp E-------ECCBCCCCCTTCCCCEEEEET-----------SCEEEEECTTTCCEEEEEEC
T ss_pred c-------ccCccccCCccccceEEEECC-----------CCEEEEEECCCCcEEEEecC
Confidence 2 1233445542 34555554 79999999999999988764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-11 Score=117.60 Aligned_cols=288 Identities=9% Similarity=0.021 Sum_probs=199.1
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+..|..++.++.+..|| .+|+.+-.... +...+.+++..++|..++. .. . +..++ ++|+.
T Consensus 30 ~g~l~v~t~~~~l~~~d-~~g~~~~~~~~-~~~~~~~~~~~~~g~l~v~------t~------~-l~~~d-~~g~~---- 89 (330)
T 3hxj_A 30 NGTIYLGSSNKNLYAIN-TDGSVKWFFKS-GEIIECRPSIGKDGTIYFG------SD------K-VYAIN-PDGTE---- 89 (330)
T ss_dssp TSCEECSSTTTTTEEEC-TTSCEEESSCG-GGEEEECCEETTTTEECCS------SC------E-EEEEC-CCGGG----
T ss_pred CCeEEEEcCCCEEEEEC-CCCcEEEEEec-CCCcccceEEecCCcEEEe------cC------c-EEEEC-CCCcE----
Confidence 66788888999999999 88998766554 5556789999888875542 12 2 44455 36654
Q ss_pred ceeeecc-ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEE
Q 011452 185 ALFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 185 ~lf~~~~-~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIkl 261 (485)
++.... ........+. +|.+.+ ++.++.+..+|.+ |+.+.... ...+.++.+.+++.+.++. .++.|..
T Consensus 90 -~~~~~~~~~~~~~~~~~--~~~l~v-~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vgt---~~~~l~~ 161 (330)
T 3hxj_A 90 -KWRFDTKKAIVSDFTIF--EDILYV-TSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVGS---NDNYLYA 161 (330)
T ss_dssp -GGGSCC-----CCEEEE--TTEEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEEC---TTSEEEE
T ss_pred -EEEEECCCCcccCceEE--CCEEEE-EecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEEc---CCCEEEE
Confidence 222110 0111133443 566554 5678899999988 88776654 3456677788777776653 3378999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCC
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNR 341 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~ 341 (485)
+|.+ |+.+..+......+..+.+. .++.+.+++ +.|..+| .+++.+.....+...+.++++.++|.+.+...++
T Consensus 162 ~d~~-g~~~~~~~~~~~~~~~~~~d--~~g~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~ 235 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDAITSAASIG--KDGTIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDG 235 (330)
T ss_dssp ECTT-SCEEEEEECSSCCCSCCEEC--TTCCEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEEEEETTT
T ss_pred ECCC-CCEeEEEecCCCceeeeEEc--CCCEEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEEEEcCCC
Confidence 9998 99988887544445555542 255677766 8999999 7787766665555678888999999988876677
Q ss_pred cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 342 TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 342 TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
.|..+|.+|+.+..+...... +.++++.++|.+.+.. . +|.|..+|. +|+.+..+.-..
T Consensus 236 gl~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~g~l~v~t-~-----------~ggl~~~d~-~g~~~~~~~~~~--- 294 (330)
T 3hxj_A 236 HLYAINPDGTEKWRFKTGKRI-----ESSPVIGNTDTIYFGS-Y-----------DGHLYAINP-DGTEKWNFETGS--- 294 (330)
T ss_dssp EEEEECTTSCEEEEEECSSCC-----CSCCEECTTSCEEEEC-T-----------TCEEEEECT-TSCEEEEEECSS---
T ss_pred eEEEECCCCCEeEEeeCCCCc-----cccceEcCCCeEEEec-C-----------CCCEEEECC-CCcEEEEEEcCC---
Confidence 888888889888877654433 4567778888877653 2 578999995 798887765432
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEc
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklW 483 (485)
..+.+++++++|+. +-|+.+|.+++-
T Consensus 295 -----------------------------------~~~~~~~~d~~g~l-~~gt~~G~~~~~ 320 (330)
T 3hxj_A 295 -----------------------------------WIIATPVIDENGTI-YFGTRNGKFYAL 320 (330)
T ss_dssp -----------------------------------CCCSCCEECTTCCE-EEECTTSCEEEE
T ss_pred -----------------------------------ccccceEEcCCCEE-EEEcCCCeEEEE
Confidence 15667888899875 558889998764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.4e-10 Score=110.53 Aligned_cols=269 Identities=12% Similarity=0.101 Sum_probs=170.7
Q ss_pred EecCEEEEEeCCCeEEeeecccCcEEEEeecCC--------cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTA--------DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 103 ~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~--------~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
+.++.|+.++.++.+..+|.++|+.+-...... ...+.+...- ++..|..++. + ..+..+|
T Consensus 51 v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~~~----~------g~l~a~d 119 (376)
T 3q7m_A 51 LADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHVYIGSE----K------AQVYALN 119 (376)
T ss_dssp EETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEEEEEET----T------SEEEEEE
T ss_pred EECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEEEEEcC----C------CEEEEEE
Confidence 347889999999999999999999886554421 2233332222 3445555442 2 3677788
Q ss_pred eccCCcCcccceeeeccccCc-eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcE------EEEEEcCCce
Q 011452 175 IRRGKPDAGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNV------QEIKISPGIM 246 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~-~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V------~~VafSpg~~ 246 (485)
..+|+. +|+...-..+ ...... +|.+ ..++.|+.+..+|.++|+.+..... ..+ ....+. ++.
T Consensus 120 ~~tG~~-----~W~~~~~~~~~~~p~~~--~~~v-~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~ 190 (376)
T 3q7m_A 120 TSDGTV-----AWQTKVAGEALSRPVVS--DGLV-LIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FGA 190 (376)
T ss_dssp TTTCCE-----EEEEECSSCCCSCCEEE--TTEE-EEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TTE
T ss_pred CCCCCE-----EEEEeCCCceEcCCEEE--CCEE-EEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CCE
Confidence 888886 4554211111 122333 4554 4467799999999999998877653 222 222333 455
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc----------e-eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR----------N-KKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV 315 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~----------~-~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~ 315 (485)
+++. ..++.|..+|.++|+.+..+...... + .... ..++.+.+++.++.|..+|.++|+.+-.
T Consensus 191 v~~g---~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~v~~~~~~g~l~~~d~~tG~~~w~ 264 (376)
T 3q7m_A 191 AVVG---GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPV---VVNGVVFALAYNGNLTALDLRSGQIMWK 264 (376)
T ss_dssp EEEC---CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCE---EETTEEEEECTTSCEEEEETTTCCEEEE
T ss_pred EEEE---cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcE---EECCEEEEEecCcEEEEEECCCCcEEee
Confidence 5543 23478999999999999887632110 1 1111 1267888888999999999999998765
Q ss_pred cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCc
Q 011452 316 SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAE 394 (485)
Q Consensus 316 l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~ 394 (485)
... ......+. .++.+++...++.|..+|.+ |+.+...+..... .+.+..+ .+..|..++.
T Consensus 265 ~~~--~~~~~~~~-~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~----~~~~~~~--~~~~l~v~~~--------- 326 (376)
T 3q7m_A 265 REL--GSVNDFIV-DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR----LLTSPVL--YNGNLVVGDS--------- 326 (376)
T ss_dssp ECC--CCEEEEEE-ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS----CCCCCEE--ETTEEEEECT---------
T ss_pred ccC--CCCCCceE-ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC----cccCCEE--ECCEEEEEeC---------
Confidence 432 23334333 35555555449999999995 9988777622111 0222333 2456666664
Q ss_pred CCCCeEEEEeCCCCeEEEEecCC
Q 011452 395 GNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 395 ~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+|.|..+|..||+.+..+...
T Consensus 327 --~g~l~~~d~~tG~~~~~~~~~ 347 (376)
T 3q7m_A 327 --EGYLHWINVEDGRFVAQQKVD 347 (376)
T ss_dssp --TSEEEEEETTTCCEEEEEECC
T ss_pred --CCeEEEEECCCCcEEEEEecC
Confidence 699999999999999888653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-11 Score=124.89 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=175.6
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---cc
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ES 191 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~ 191 (485)
+++.+.|..|++.+.++..+.. . .|+|||||+.|..+..+.+.....=...++.+.|..+++.....++=.. ..
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 7999999999999999987543 5 8999999999887663210000000114888889888887432221000 01
Q ss_pred ccCceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
...|..++|+ |||++|..+.. +++|-|.|+++++.+.++.-... +.+.| +...+++.+ .|+++-+.++.+|+
T Consensus 176 g~~P~~~~~s-pDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~--~~~~p~g~~~~v~~~--~dG~~~~V~~~~~~ 250 (426)
T 3c75_H 176 GTYQWMNALT-PDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC--YHIFPASPTVFYMNC--RDGSLARVDFADGE 250 (426)
T ss_dssp SCCGGGSEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEEEEE--TTSSEEEEECCTTC
T ss_pred CCCcceEEEc-CCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc--eeeccCCCcEEEEEc--CCCCEEEEECCCCc
Confidence 2356689998 79988776653 68999999999999988863221 22222 112222211 12344444555555
Q ss_pred EEEEe----ecCCcce-eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE--ec---cc----C---CCceEEEEEcCC
Q 011452 269 VLKSF----NHLLHRN-KKVDFIEQFNEKLLVKQENENLQILDVRNFELTE--VS---RT----E---FMTPSAFIFLYE 331 (485)
Q Consensus 269 ~L~tl----~~~~~~~-~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~--~l---~g----h---~~~v~avaFspd 331 (485)
...+. .-....+ ..+.|. ++++.++.....++|-+.|+.++.... .. .. + ......++|+||
T Consensus 251 v~~~~~~~~~v~~~p~~~~~~~~-~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~d 329 (426)
T 3c75_H 251 TKVTNTEVFHTEDELLINHPAFS-LRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQ 329 (426)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEC-TTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGG
T ss_pred EEEEeeeeeccCCCceeeEeeec-CCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCC
Confidence 55321 1101111 134554 677888777788899999997654211 10 00 0 011123689999
Q ss_pred CcEEEEEe-----------CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCC
Q 011452 332 NQLFLTFR-----------NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 332 g~llaS~s-----------D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~Dg 398 (485)
++++.... +++|.+.|.. ++.+.++.--.. .++|+|+|||+ +|++... .++
T Consensus 330 g~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~------P~gia~spDg~~~lyv~n~----------~s~ 393 (426)
T 3c75_H 330 SDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHE------IDSINVSQDAEPLLYALSA----------GTQ 393 (426)
T ss_dssp GTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEE------ECEEEECCSSSCEEEEEET----------TTT
T ss_pred CCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCC------cCeEEEccCCCEEEEEEcC----------CCC
Confidence 77655442 2479999995 999998864321 57999999999 9998874 279
Q ss_pred eEEEEeCCCCeEEEEe
Q 011452 399 SINISNILTGKCLAKI 414 (485)
Q Consensus 399 tIklWdl~TGk~l~tl 414 (485)
+|-++|+.|++.++++
T Consensus 394 ~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 394 TLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred eEEEEECCCCCEEEEe
Confidence 9999999999999998
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.42 E-value=6e-11 Score=115.50 Aligned_cols=233 Identities=11% Similarity=0.043 Sum_probs=158.7
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
+..+..|.. ...+..+.+|+|+|+.|+.+. ... ..+..|+. .|+. ..|.. ....+..++|+ ++
T Consensus 34 ~~~~~~l~~-~~~~~egp~~~~~g~~l~~~d--~~~-------~~i~~~~~-~g~~----~~~~~-~~~~~~gl~~d-~d 96 (305)
T 3dr2_A 34 DARLLTLYD-QATWSEGPAWWEAQRTLVWSD--LVG-------RRVLGWRE-DGTV----DVLLD-ATAFTNGNAVD-AQ 96 (305)
T ss_dssp TCCCEEEEC-CCSSEEEEEEEGGGTEEEEEE--TTT-------TEEEEEET-TSCE----EEEEE-SCSCEEEEEEC-TT
T ss_pred CCceEEEec-CCcCccCCeEeCCCCEEEEEE--CCC-------CEEEEEeC-CCCE----EEEeC-CCCccceeeEC-CC
Confidence 334444444 344678999999999665533 222 46777774 6654 23443 33557789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEE---cC---CcEEEEEEcCCceEEEEEc----C-----------CCCeeEEEEe
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSI---SD---KNVQEIKISPGIMLLIFTK----A-----------SGHVPLKILS 263 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl---~~---~~V~~VafSpg~~ll~sss----~-----------~~D~tIklWd 263 (485)
|+++++...++.|.+||.+ |+..... .+ ..+++++++|++.+.++.+ . .....|..+|
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9988877777899999986 6643222 11 3577899999888777521 0 0125688888
Q ss_pred cCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC------CcEEEEECCCCeeE--Eec-ccCCCceEEEEEcCCCcE
Q 011452 264 IEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRNFELT--EVS-RTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D------~tIkIWDv~tg~~~--~~l-~gh~~~v~avaFspdg~l 334 (485)
.++|+..... .......++|+ |++..|.++..+ +.|.+||+..+.+. +.+ ......+..+++.++|++
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~s-pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFS-PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEEC-TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCCcEEEEe--cCCCCcceEEc-CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 8788765433 23455688986 777778777543 79999999865421 111 112345677899999997
Q ss_pred EEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 335 FLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 335 laS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.++..++ |.+||.+|+++..+..+. . +.+++|+||++.|..++.
T Consensus 253 wv~~~~g-v~~~~~~g~~~~~~~~~~-~-----~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 253 WSSSGTG-VCVFDSDGQLLGHIPTPG-T-----ASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp EECCSSE-EEEECTTSCEEEEEECSS-C-----CCEEEECTTSCEEEEEET
T ss_pred EEecCCc-EEEECCCCCEEEEEECCC-c-----eeEEEEeCCCCEEEEEcC
Confidence 7766454 999999999998887654 2 689999999988887764
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=126.89 Aligned_cols=283 Identities=13% Similarity=0.110 Sum_probs=180.6
Q ss_pred eeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CC
Q 011452 145 NKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QD 214 (485)
Q Consensus 145 spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D 214 (485)
-|+++.+..+.. .+ .++. .++.+-|..+++... .+.. -..| .++|+ |||+.|..+. .+
T Consensus 81 ~~~~~~vyV~n~--~~--~~~~-~~VsVID~~t~~vv~---~I~v--G~~P-gia~S-pDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 81 APDARRVYIQDP--AH--FAAI-TQQFVIDGSTGRILG---MTDG--GFLP-HPVAA-EDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCCTTEEEEEEC--TT--TCSS-EEEEEEETTTTEEEE---EEEE--CSSC-EEEEC-TTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCCEEEEECC--Cc--CCCC-CeEEEEECCCCEEEE---EEEC--CCCC-ceEEC-CCCCEEEEEeccccccccCCCC
Confidence 356666554332 11 1223 588888988887632 2222 2356 89998 7998766554 47
Q ss_pred CcEEEeecCCCeEEEEEc-C--------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 215 SIYKVFDLKNYTMLYSIS-D--------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~-~--------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
++|-++|..+++.+.++. + ..-..++|||++..|..+....+.+|-+.|+++++.++++.- ... +..
T Consensus 149 ~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v--~g~--~~~ 224 (426)
T 3c75_H 149 DYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV--PDC--YHI 224 (426)
T ss_dssp EEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC--CSE--EEE
T ss_pred CEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc--CCc--eee
Confidence 899999999999988874 2 233578999866555443332247899999999999999873 111 222
Q ss_pred EecCC-CEEEEEeCCCcEEEEECCCCeeEEe----cccCCCc-eEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEE---E
Q 011452 286 IEQFN-EKLLVKQENENLQILDVRNFELTEV----SRTEFMT-PSAFIFLYENQLFLTFR-NRTVAVWNFRGELVT---S 355 (485)
Q Consensus 286 ~~~~~-~~lls~s~D~tIkIWDv~tg~~~~~----l~gh~~~-v~avaFspdg~llaS~s-D~TIklWd~~G~ll~---t 355 (485)
. |++ ..+++-+.|+++-+.|..+++...+ +.-.... ...+.|+++++.++-.+ .++|.+-|..+..+. +
T Consensus 225 ~-p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~ 303 (426)
T 3c75_H 225 F-PASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP 303 (426)
T ss_dssp E-EEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC
T ss_pred c-cCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee
Confidence 2 333 3344456888888888876665432 1111111 12356899988877667 889999998644322 2
Q ss_pred ee---cC---CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccC
Q 011452 356 FE---DH---LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCS 429 (485)
Q Consensus 356 l~---gH---~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~ 429 (485)
++ .. ..|.+.. ...++|+|||++|....... .+..-...+++|-+.|+.|++.+++|..-.
T Consensus 304 ~~~~~~~~i~~g~~p~g-~~~va~s~dg~rlyVa~~~~-~~gthk~~s~~VsVID~~T~kvv~~I~vg~----------- 370 (426)
T 3c75_H 304 IEALTEAERADDWRPGG-WQQTAYHRQSDRIYLLVDQR-DEWKHKAASRFVVVLNAETGERINKIELGH----------- 370 (426)
T ss_dssp EESSCTTTGGGTEEECS-SSCEEEEGGGTEEEEEEEEC-CTTCTTSCEEEEEEEETTTCCEEEEEEEEE-----------
T ss_pred eeeccccccccccccCC-ceeeEEcCCCCEEEEEeccc-ccccccCCCCEEEEEECCCCeEEEEEECCC-----------
Confidence 11 00 0121111 23489999999777664210 000000013689999999999999996532
Q ss_pred CCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC-EEEEec-CCCcEEEccC
Q 011452 430 GDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN-EIYTGN-RHGLVHVWSN 485 (485)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~-~LaSgs-~DgtVklWd~ 485 (485)
..++++|+|||+ .||+.+ .+++|-|+|.
T Consensus 371 ----------------------------~P~gia~spDg~~~lyv~n~~s~~VsVID~ 400 (426)
T 3c75_H 371 ----------------------------EIDSINVSQDAEPLLYALSAGTQTLHIYDA 400 (426)
T ss_dssp ----------------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred ----------------------------CcCeEEEccCCCEEEEEEcCCCCeEEEEEC
Confidence 467899999999 999999 5999999873
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-11 Score=126.26 Aligned_cols=282 Identities=8% Similarity=-0.020 Sum_probs=172.8
Q ss_pred CEEEEEeCCC----eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC
Q 011452 106 DIVFALAQSG----VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (485)
Q Consensus 106 ~~ias~s~dg----tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~ 181 (485)
...++...++ ++-+.|.++++.+.++..+.. + .++|||||+.|..+..+.......=...++.++|+.+++..
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv 109 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI 109 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE
Confidence 4444444455 788999999999999987554 5 79999999999887643100000001268999999999874
Q ss_pred cccceeeec---cccCceEEEEeCCCCeEEEEeeC--CCcEEE--eecCCCeEEEEEcCCcEEEEEEcC-CceEEEEEcC
Q 011452 182 AGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQ--DSIYKV--FDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKA 253 (485)
Q Consensus 182 ~~~~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~--D~tiKl--Wdl~~g~~l~tl~~~~V~~VafSp-g~~ll~sss~ 253 (485)
...++=... ....|..++|| |||++|..+.. +.++.| +|+++ +.++.-... +.+.| +....++ .
T Consensus 110 ~~I~v~~~~~~~~g~~P~~ia~S-pDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~--~~~~p~g~~~~~~--~ 181 (368)
T 1mda_H 110 ADIELPDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC--FHIHPGAAATHYL--G 181 (368)
T ss_dssp EEEEETTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC--CCCEEEETTEEEC--C
T ss_pred EEEECCCccccccCCCcceEEEc-CCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc--eEEccCCCeEEEE--E
Confidence 322211000 11356789998 79988777653 467989 99877 444431110 11233 2222222 1
Q ss_pred CCCeeEEEEecCC-----CeEEEEee--cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe--eEEecc-------
Q 011452 254 SGHVPLKILSIED-----GTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE--LTEVSR------- 317 (485)
Q Consensus 254 ~~D~tIklWdi~t-----G~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~--~~~~l~------- 317 (485)
..|+.+-+-|+++ |+.+.+.. -..+.. ..+ . ++++.++..+. ++|.+.|+.++. .+..+.
T Consensus 182 ~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~-P~~-~-~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~ 257 (368)
T 1mda_H 182 SCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQ-AAQ-A-NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRK 257 (368)
T ss_dssp CCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSC-CEE-E-TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHH
T ss_pred cCCCCEEEEECccccccCCeEEEEeeeeeeCCCC-ccc-c-ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccc
Confidence 2334555556665 54432110 000111 113 2 56777777777 999999997643 222221
Q ss_pred cCCCceEE---EEEcCCCcEEEE-Ee-C-C-------cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE-EEE
Q 011452 318 TEFMTPSA---FIFLYENQLFLT-FR-N-R-------TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL-IIS 382 (485)
Q Consensus 318 gh~~~v~a---vaFspdg~llaS-~s-D-~-------TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~-LaS 382 (485)
.+...+.. ++|+|||+.+.. .. + + .+.++|+. ++.+.++.... . .+.|+|+|||++ +++
T Consensus 258 ~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~-----p~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 258 ADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D-----SDAIIAAQDGASDNYA 331 (368)
T ss_dssp HTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E-----ECEEEECCSSSCEEEE
T ss_pred ccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-C-----cceEEECCCCCEEEEE
Confidence 01111111 689999876654 33 3 2 56699995 99999887544 2 579999999985 454
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
... .+++|-++|+.|++.++++....
T Consensus 332 ~~~----------~~~~VsVID~~t~kvv~~I~vg~ 357 (368)
T 1mda_H 332 NSA----------GTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EET----------TTTEEEEEESSSCEEEEECCCCS
T ss_pred ccC----------CCCeEEEEECCCCcEEEEEECCC
Confidence 441 16999999999999999998765
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.38 E-value=9.8e-12 Score=129.18 Aligned_cols=170 Identities=14% Similarity=0.151 Sum_probs=130.1
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-------------EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-------------~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
.+..++++ +...+|+.|+.| .++||++++.. .+..+. . |..|+| ++..|+++ .++.|+
T Consensus 39 ~~nlLais-~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp-~-V~~l~f-d~~~L~v~----~~~~l~ 109 (388)
T 1xip_A 39 SLQNLDIS-NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIP-D-VIFVCF-HGDQVLVS----TRNALY 109 (388)
T ss_dssp CCBCEEEE-TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECT-T-EEEEEE-ETTEEEEE----ESSEEE
T ss_pred cccEEEEc-CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCC-C-eeEEEE-CCCEEEEE----cCCcEE
Confidence 34578998 577788888887 56679976433 233333 3 999999 76676665 237999
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR- 339 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s- 339 (485)
+||+.+-....++..|...+..+.+..| .+++...||+|.+||+.++.+.. +...|.+++|||+| ++.+.
T Consensus 110 v~dv~sl~~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~ 180 (388)
T 1xip_A 110 SLDLEELSEFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLK 180 (388)
T ss_dssp EEESSSTTCEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEET
T ss_pred EEEchhhhccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEc
Confidence 9998877666666666677778877644 38888999999999999888754 34589999999999 45565
Q ss_pred CCcEEEEeCCC-cE--EEEe------e---cCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 340 NRTVAVWNFRG-EL--VTSF------E---DHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 340 D~TIklWd~~G-~l--l~tl------~---gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
|++|++|+.++ ++ ..++ + +|... |.+|.|.+++++|+++...
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~-----V~sI~wl~~~~flv~y~~~ 234 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS-----PLSVTILSPQDFLAVFGNV 234 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE-----EEEEEESSSSEEEEEEECC
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCee-----EEEEEEecCCeEEEEEcCC
Confidence 99999999974 44 6777 3 35544 9999999999999999874
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-11 Score=127.30 Aligned_cols=168 Identities=10% Similarity=0.025 Sum_probs=126.4
Q ss_pred CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe-----------EEEEeecCCcceeEEEEEecCCCEEEEEeCCCc
Q 011452 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT-----------VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENEN 301 (485)
Q Consensus 234 ~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~-----------~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~t 301 (485)
..++.+++|+ .+.++++ +. ..+++|++++.. ..... .+.. +..|+| ++..|+++ .++.
T Consensus 38 ~~~nlLais~~~gll~a~-~~---~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~ 107 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAA-SG---SKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNA 107 (388)
T ss_dssp SCCBCEEEETTTTEEEEE-ET---TEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSE
T ss_pred ccccEEEEcCCCCEEEEe-CC---CEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCc
Confidence 3688899997 5555544 43 278889876443 11122 2335 899999 57777777 8999
Q ss_pred EEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE
Q 011452 302 LQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL 379 (485)
Q Consensus 302 IkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~ 379 (485)
|++||+++.........|...+..+.+.+.. +|... ||+|.+||+. +.+.. +... |.+++|||+|
T Consensus 108 l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~-----Vs~v~WSpkG-- 174 (388)
T 1xip_A 108 LYSLDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQN-----VTSFDVTNSQ-- 174 (388)
T ss_dssp EEEEESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEES-----EEEEEECSSE--
T ss_pred EEEEEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCC-----ceEEEEcCCc--
Confidence 9999999877666666777888888887654 67777 9999999996 77654 2223 9999999999
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCCeE--EEEecC---------CCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTGKC--LAKIRA---------SNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~--l~tl~g---------H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
++.|+. ||+|++|+..++++ .++|.. |+
T Consensus 175 ~~vg~~-----------dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~------------------------------ 213 (388)
T 1xip_A 175 LAVLLK-----------DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEE------------------------------ 213 (388)
T ss_dssp EEEEET-----------TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTT------------------------------
T ss_pred eEEEEc-----------CCcEEEEcCCCccccccceecCCcccccccCCC------------------------------
Confidence 566776 79999999988887 788832 32
Q ss_pred ccchhcccCCeEEEEEcCCCCEEEE
Q 011452 449 RSTVAEALEDITALFYDEDRNEIYT 473 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~LaS 473 (485)
-.|.+|.|.+++++|++
T Consensus 214 --------~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 214 --------YSPLSVTILSPQDFLAV 230 (388)
T ss_dssp --------SEEEEEEESSSSEEEEE
T ss_pred --------eeEEEEEEecCCeEEEE
Confidence 28999999999999887
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-10 Score=125.39 Aligned_cols=244 Identities=14% Similarity=0.087 Sum_probs=158.9
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC----cEEEEEEcC---CceEEEEEcCC---CCeeEEEEecCCC
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKISP---GIMLLIFTKAS---GHVPLKILSIEDG 267 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~----~V~~VafSp---g~~ll~sss~~---~D~tIklWdi~tG 267 (485)
++.. +|+ |..++.|+.+..+|.+||+.+-+.... ....+..+| ++.+++..+.. .++.|..||.+||
T Consensus 117 ~~~~--~g~-v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 117 VAVW--KGK-VYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETG 193 (689)
T ss_dssp CEEE--TTE-EEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTC
T ss_pred cEEE--CCE-EEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCC
Confidence 4443 455 455678999999999999988766421 122333344 66666653321 3589999999999
Q ss_pred eEEEEeecCC------------------------------ccee-EEEEEecCCCEEEEEeCCC----------------
Q 011452 268 TVLKSFNHLL------------------------------HRNK-KVDFIEQFNEKLLVKQENE---------------- 300 (485)
Q Consensus 268 ~~L~tl~~~~------------------------------~~~~-~V~f~~~~~~~lls~s~D~---------------- 300 (485)
+++.++.... +.++ .+++. +.++.+.++..++
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~~ 272 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD-PELNLLYIGVGNGSLWDPKWRSQAKGDNL 272 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHHTTCSCCT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc-CCCCEEEEeCCCCCccccCCCCCCCCCce
Confidence 9998875210 0112 46665 5677888877665
Q ss_pred ---cEEEEECCCCeeEEeccc--CCC-------ceEEEEEcCCCc---EEEEEe-CCcEEEEeCC-CcEEEEeec-CCCC
Q 011452 301 ---NLQILDVRNFELTEVSRT--EFM-------TPSAFIFLYENQ---LFLTFR-NRTVAVWNFR-GELVTSFED-HLLW 362 (485)
Q Consensus 301 ---tIkIWDv~tg~~~~~l~g--h~~-------~v~avaFspdg~---llaS~s-D~TIklWd~~-G~ll~tl~g-H~~~ 362 (485)
.|..||.+||+.+-.... |.. .+.......+|+ .++.++ ||.+.++|.+ |+++...+- +..|
T Consensus 273 y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w 352 (689)
T 1yiq_A 273 FLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSW 352 (689)
T ss_dssp TTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSS
T ss_pred eeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecccccccccc
Confidence 499999999998766543 321 122222334776 788888 9999999995 999843321 1111
Q ss_pred CC--------------------C------------C-CeeEEEECCCCCEEEEEecCCCC----CC-----------CCc
Q 011452 363 HP--------------------D------------C-NTNNIYITSDQDLIISYCKADSD----DP-----------LAE 394 (485)
Q Consensus 363 ~~--------------------~------------~-~v~svafSpDG~~LaS~s~d~~~----d~-----------~~~ 394 (485)
.. + . +-..++|+|+.+++...+.+-.. +. .-.
T Consensus 353 ~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (689)
T 1yiq_A 353 TKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQL 432 (689)
T ss_dssp EEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCC
T ss_pred ccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccccccccccccccc
Confidence 00 0 0 01247999999999887542100 00 000
Q ss_pred C-------------------CCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcc
Q 011452 395 G-------------------NAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEA 455 (485)
Q Consensus 395 ~-------------------~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (485)
+ .+|+|+.||+.|||.+.+++.+.
T Consensus 433 g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~------------------------------------- 475 (689)
T 1yiq_A 433 GLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT------------------------------------- 475 (689)
T ss_dssp SSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS-------------------------------------
T ss_pred CccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC-------------------------------------
Confidence 1 14899999999999999987664
Q ss_pred cCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 456 LEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 456 l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.+.+-.++..|..|+.|+.|+.|++||
T Consensus 476 --~~~~g~~~tagglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 476 --IFNGGTLSTAGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp --SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred --CccCccceECCCEEEEECCCCcEEEEE
Confidence 222345667889999999999999998
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-10 Score=123.48 Aligned_cols=245 Identities=11% Similarity=0.035 Sum_probs=161.3
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-------cEEE-EEEcCCceEEEEEcCC---CCeeEEEEecC
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-------NVQE-IKISPGIMLLIFTKAS---GHVPLKILSIE 265 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-------~V~~-VafSpg~~ll~sss~~---~D~tIklWdi~ 265 (485)
.++++ ++++ ..++.|+.+..+|.++|+.+.++... .+.+ ..+ .++.+++..+.. .++.|..+|.+
T Consensus 123 ~~a~~--~~~v-~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~ 198 (677)
T 1kb0_A 123 GVALW--KGKV-YVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAE 198 (677)
T ss_dssp CCEEE--TTEE-EEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETT
T ss_pred CceEE--CCEE-EEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECC
Confidence 35554 4554 44677999999999999998777532 2211 111 156666553321 25899999999
Q ss_pred CCeEEEEeecCCcc-------------------------------e-eEEEEEecCCCEEEEEeCCC-------------
Q 011452 266 DGTVLKSFNHLLHR-------------------------------N-KKVDFIEQFNEKLLVKQENE------------- 300 (485)
Q Consensus 266 tG~~L~tl~~~~~~-------------------------------~-~~V~f~~~~~~~lls~s~D~------------- 300 (485)
||+++.++...... + ..+++. ++++.+.++..++
T Consensus 199 tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d-~~~~~vy~~~~~~~~w~~~~~~~~~g 277 (677)
T 1kb0_A 199 TGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFD-AELNTMYVGTGNGSPWSHKVRSPKGG 277 (677)
T ss_dssp TCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCC
T ss_pred CCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEc-CCCCEEEEECCCCccccCCCCCccCC
Confidence 99999888632111 1 145664 5677888775543
Q ss_pred ------cEEEEECCCCeeEEecc--cCC-------CceEEEEEcCCC---cEEEEEe-CCcEEEEeCC-CcEEEEeecC-
Q 011452 301 ------NLQILDVRNFELTEVSR--TEF-------MTPSAFIFLYEN---QLFLTFR-NRTVAVWNFR-GELVTSFEDH- 359 (485)
Q Consensus 301 ------tIkIWDv~tg~~~~~l~--gh~-------~~v~avaFspdg---~llaS~s-D~TIklWd~~-G~ll~tl~gH- 359 (485)
+|..+|.+||+.+-... .|. ..+..+.+..|| +.++.++ ++.|.++|.+ |+++..+.-.
T Consensus 278 d~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~ 357 (677)
T 1kb0_A 278 DNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVP 357 (677)
T ss_dssp CCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSC
T ss_pred CCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccc
Confidence 59999999999876543 232 223334445588 6788888 9999999995 9998776521
Q ss_pred CCCC----CCCC-e------------------------eEEEECCCCCEEEEEecCCCCC-----CCC------------
Q 011452 360 LLWH----PDCN-T------------------------NNIYITSDQDLIISYCKADSDD-----PLA------------ 393 (485)
Q Consensus 360 ~~~~----~~~~-v------------------------~svafSpDG~~LaS~s~d~~~d-----~~~------------ 393 (485)
..|. ..|. + ..++|+|++.++...+.+-..+ ...
T Consensus 358 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 437 (677)
T 1kb0_A 358 VNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG 437 (677)
T ss_dssp CSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG
T ss_pred cCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccc
Confidence 1110 0000 0 2578999999998865410000 000
Q ss_pred ---------------cCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCC
Q 011452 394 ---------------EGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALED 458 (485)
Q Consensus 394 ---------------~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (485)
....|+|..||+.|||.+.+++... .
T Consensus 438 ~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---------------------------------------~ 478 (677)
T 1kb0_A 438 TGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS---------------------------------------P 478 (677)
T ss_dssp GTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS---------------------------------------S
T ss_pred cccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCC---------------------------------------C
Confidence 0123899999999999999886432 3
Q ss_pred eEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 459 ITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 459 V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
+++..++++|..++.|+.||.|++||.
T Consensus 479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 479 WNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred CcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 444567788999999999999999983
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-12 Score=130.82 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-c
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM-T 322 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~-~ 322 (485)
++++++++ .|+.|..||.++|+++.+++. +.+.+..+. .++..+++++.|++|..||.++|+.+.....+.. .
T Consensus 9 ~~~v~~gs---~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~-~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~ 82 (369)
T 2hz6_A 9 ETLLFVST---LDGSLHAVSKRTGSIKWTLKE--DPVLQVPTH-VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL 82 (369)
T ss_dssp TTEEEEEE---TTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHH
T ss_pred CCEEEEEc---CCCEEEEEECCCCCEEEEecC--CCceecceE-cCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc
Confidence 66666653 347999999999999999985 444444443 3344555568999999999999998766644321 1
Q ss_pred eE-EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 323 PS-AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 323 v~-avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+. +.++..+ .++++++ |++|..||.+ |+++.+++.+. .+.++|++..|+.++. |++
T Consensus 83 ~~~sp~~~~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------~~~~~p~~~~v~~~~~-----------dg~ 141 (369)
T 2hz6_A 83 VQASPCRSSD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------ADSLSPSTSLLYLGRT-----------EYT 141 (369)
T ss_dssp HTTCSCC------CCCCEEEEEEEEECCC-------------------------------EEEEEE-----------EEE
T ss_pred cccCceEecC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC---------cccccccCCEEEEEec-----------CCE
Confidence 11 1112234 4566666 9999999996 99998887653 2456789999999886 699
Q ss_pred EEEEeCCCCeEEEEecC
Q 011452 400 INISNILTGKCLAKIRA 416 (485)
Q Consensus 400 IklWdl~TGk~l~tl~g 416 (485)
|..||..||+++.++..
T Consensus 142 v~a~d~~tG~~~W~~~~ 158 (369)
T 2hz6_A 142 ITMYDTKTRELRWNATY 158 (369)
T ss_dssp EECCCSSSSSCCCEEEE
T ss_pred EEEEECCCCCEEEeEec
Confidence 99999999998877754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-10 Score=117.97 Aligned_cols=256 Identities=9% Similarity=0.052 Sum_probs=156.0
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CCCcEEEeecCCCeEEEEEc-C----
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QDSIYKVFDLKNYTMLYSIS-D---- 233 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D~tiKlWdl~~g~~l~tl~-~---- 233 (485)
++.+.|..+++... .+..+ ..| .++|+ |||+.|..+. .|++|.+||+.+++.+.++. +
T Consensus 47 ~vsvID~~t~~v~~---~i~vG--~~P-~i~~s-pDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~ 119 (368)
T 1mda_H 47 ENWVSCAGCGVTLG---HSLGA--FLS-LAVAG-HSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPR 119 (368)
T ss_dssp EEEEEETTTTEEEE---EEEEC--TTC-EEEEC-TTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCS
T ss_pred eEEEEECCCCeEEE---EEeCC--CCC-ceEEC-CCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccc
Confidence 66677877777632 23332 235 79998 7998877765 37899999999999999884 2
Q ss_pred ----CcEEEEEEcCCceEEEEEcCCCCeeEEE--EecCCCeEEEEeecCCcceeEEEEEecCCCEE-EEEeCCCcEEEEE
Q 011452 234 ----KNVQEIKISPGIMLLIFTKASGHVPLKI--LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL-LVKQENENLQILD 306 (485)
Q Consensus 234 ----~~V~~VafSpg~~ll~sss~~~D~tIkl--Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~l-ls~s~D~tIkIWD 306 (485)
..-..++|||++++|..+.......|.+ +|+++ ++++.- ... +.+. |+++.. ++.+.|+++-+-|
T Consensus 120 ~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v--~~~--~~~~-p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 120 FSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKS--ASC--FHIH-PGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp CCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEEC--SSC--CCCE-EEETTEEECCCCTTSCEEEE
T ss_pred cccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEEC--CCc--eEEc-cCCCeEEEEEcCCCCEEEEE
Confidence 2456799998665444333222256777 99977 555541 111 1122 334444 3447888988889
Q ss_pred CCC-----CeeEEe----cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCC---cEEEEeec------CCCCCCCCCe
Q 011452 307 VRN-----FELTEV----SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRG---ELVTSFED------HLLWHPDCNT 368 (485)
Q Consensus 307 v~t-----g~~~~~----l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G---~ll~tl~g------H~~~~~~~~v 368 (485)
+.+ ++...+ ..-.. .+. ++.+++.++.... ++|.+-|+.+ +.+.++.- ...|.|.+ .
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~-~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g-~ 266 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSS-QAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG-F 266 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCS-CCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS-S
T ss_pred CccccccCCeEEEEeeeeeeCCC-Ccc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCc-c
Confidence 987 543321 11111 222 3555666555555 8888888853 23333211 11222221 1
Q ss_pred eEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccccccccccc
Q 011452 369 NNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRI 448 (485)
Q Consensus 369 ~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (485)
..++|+|||++|.-+....+.. .....++ +.++|+.|++.+++|....
T Consensus 267 ~~v~~s~dg~~lyV~~~~~~~~-~~~~~~~-~~ViD~~t~~vv~~i~vg~------------------------------ 314 (368)
T 1mda_H 267 QMVAKLKNTDGIMILTVEHSRS-CLAAAEN-TSSVTASVGQTSGPISNGH------------------------------ 314 (368)
T ss_dssp SCEEEETTTTEEEEEEEECSSC-TTSCEEE-EEEEESSSCCEEECCEEEE------------------------------
T ss_pred eeeEEcCCCCEEEEEeccccCc-ccccCCC-EEEEECCCCeEEEEEECCC------------------------------
Confidence 2378999999887543100000 0000123 4499999999999997643
Q ss_pred ccchhcccCCeEEEEEcCCCCE-EEEec-CCCcEEEccC
Q 011452 449 RSTVAEALEDITALFYDEDRNE-IYTGN-RHGLVHVWSN 485 (485)
Q Consensus 449 ~~~~~~~l~~V~sl~fspDg~~-LaSgs-~DgtVklWd~ 485 (485)
..++++|+|||+. +++.. .+++|.|+|.
T Consensus 315 ---------~p~gi~~s~Dg~~l~va~~~~~~~VsVID~ 344 (368)
T 1mda_H 315 ---------DSDAIIAAQDGASDNYANSAGTEVLDIYDA 344 (368)
T ss_dssp ---------EECEEEECCSSSCEEEEEETTTTEEEEEES
T ss_pred ---------CcceEEECCCCCEEEEEccCCCCeEEEEEC
Confidence 5678999999984 66666 5999999983
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-07 Score=88.26 Aligned_cols=205 Identities=11% Similarity=-0.003 Sum_probs=137.2
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..++..++|++.++.+.++....+.|.++|+.+......+.. .....|+++| ++.+..+... ...|.++++. |+
T Consensus 35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~--~~~I~~~~~~-g~ 111 (267)
T 1npe_A 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMD-GT 111 (267)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETT-SC
T ss_pred CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECC--CCEEEEEEcC-CC
Confidence 346778999854677888877889999999976654333432 4789999997 6777776543 3689999985 44
Q ss_pred EEEEee-cCCcceeEEEEEecCCCEEEEEeC---CCcEEEEECCCCeeEEecccCCCceEEEEEcCCC-cEEEEEe-CCc
Q 011452 269 VLKSFN-HLLHRNKKVDFIEQFNEKLLVKQE---NENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN-QLFLTFR-NRT 342 (485)
Q Consensus 269 ~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~---D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg-~llaS~s-D~T 342 (485)
..+.+. .....-..+++. ++++.|..+.. .+.|..+++...............+..++|+|++ .++++-. .+.
T Consensus 112 ~~~~~~~~~~~~P~~i~vd-~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp SCEEEECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred CEEEEEECCCCCccEEEEe-eCCCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 333332 212345688886 56777777653 4789888987433222222345689999999975 5566666 889
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
|...|.+|..+..+-... .+ -.+|++ |+..|.-+.. ..+.|...|..+|+.++++...
T Consensus 191 I~~~~~~g~~~~~~~~~~-~~----P~gi~~--d~~~lyva~~----------~~~~v~~~d~~~g~~~~~i~~g 248 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEGL-QY----PFAVTS--YGKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPH 248 (267)
T ss_dssp EEEEETTEEEEEEEEECC-CS----EEEEEE--ETTEEEEEET----------TTTEEEEEETTTTEEEEEECCS
T ss_pred EEEEecCCCceEEEecCC-CC----ceEEEE--eCCEEEEEEC----------CCCeEEEEeCCCCCceEEEccc
Confidence 999999865443332211 11 346665 4555555543 1589999999999999999643
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-08 Score=111.74 Aligned_cols=278 Identities=12% Similarity=0.124 Sum_probs=176.2
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcc----------cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~----------~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
.+++|+.++.++.+..+|.+||+.+=........ .-+++++ .+..|+.++ .+ ..+...
T Consensus 65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~d------g~l~al 132 (668)
T 1kv9_A 65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGT----LD------GRLIAL 132 (668)
T ss_dssp ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEEC----TT------SEEEEE
T ss_pred ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEc----CC------CEEEEE
Confidence 4788999999999999999999988665432110 0133344 245565544 23 367777
Q ss_pred EeccCCcCcccceeeecccc----C-ce-EEEEeCCCCeEEEEeeC-----CCcEEEeecCCCeEEEEEcC---C-----
Q 011452 174 YIRRGKPDAGFALFESESLK----W-PG-FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISD---K----- 234 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~----~-~~-~V~Fs~pnG~~Las~s~-----D~tiKlWdl~~g~~l~tl~~---~----- 234 (485)
|..+|++ +|+..... + +. .... .+|++++..+. ++.|..+|+++|+++-++.. .
T Consensus 133 D~~tG~~-----~W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~ 205 (668)
T 1kv9_A 133 DAKTGKA-----IWSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPY 205 (668)
T ss_dssp ETTTCCE-----EEEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCC
T ss_pred ECCCCCE-----eeeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccc
Confidence 8888887 55542110 0 00 1112 16777765442 68999999999999877641 1
Q ss_pred ------------------------cE-EEEEEcC-CceEEEEEcCCC-------------C----eeEEEEecCCCeEEE
Q 011452 235 ------------------------NV-QEIKISP-GIMLLIFTKASG-------------H----VPLKILSIEDGTVLK 271 (485)
Q Consensus 235 ------------------------~V-~~VafSp-g~~ll~sss~~~-------------D----~tIklWdi~tG~~L~ 271 (485)
.+ ..+++.| ++++.+. ..+. | ..|.-+|.+||+.+.
T Consensus 206 ~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~-~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W 284 (668)
T 1kv9_A 206 EHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVG-TGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAW 284 (668)
T ss_dssp SSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEE-CCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEE
T ss_pred cccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEe-CCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceee
Confidence 01 1368887 4444443 2221 0 149999999999999
Q ss_pred EeecCCccee------E-EEE-EecCCC---EEEEEeCCCcEEEEECCCCeeEEecccCC-----------Cce------
Q 011452 272 SFNHLLHRNK------K-VDF-IEQFNE---KLLVKQENENLQILDVRNFELTEVSRTEF-----------MTP------ 323 (485)
Q Consensus 272 tl~~~~~~~~------~-V~f-~~~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~gh~-----------~~v------ 323 (485)
.++...+..+ . +.+ ...++. .+++++.|+.+.++|.+||+++....-.. ..+
T Consensus 285 ~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~ 364 (668)
T 1kv9_A 285 HYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGV 364 (668)
T ss_dssp EEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTT
T ss_pred EeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccc
Confidence 8874211111 1 111 112333 36667899999999999999873321110 000
Q ss_pred -------------------EEEEEcCCCcEEEE------------------------------------Ee-CCcEEEEe
Q 011452 324 -------------------SAFIFLYENQLFLT------------------------------------FR-NRTVAVWN 347 (485)
Q Consensus 324 -------------------~avaFspdg~llaS------------------------------------~s-D~TIklWd 347 (485)
..++|+|+..++.. .. +++|..||
T Consensus 365 ~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D 444 (668)
T 1kv9_A 365 RYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWD 444 (668)
T ss_dssp TCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEE
T ss_pred cccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEe
Confidence 12577887666542 12 48899999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
.. |+.+-..+.+.. ++...++..|.+|+.++. |+.++.||..||+.+..++-..
T Consensus 445 ~~tG~~~W~~~~~~~------~~~~~~~t~gg~vf~g~~-----------dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 445 PVKQKAAWKVPYPTH------WNGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp TTTTEEEEEEEESSS------CCCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCcEEEEccCCCC------CcCceeEeCCCEEEEECC-----------cccchhhhhhcChhheEecCCC
Confidence 95 999888765543 234455567888888876 7999999999999999987654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.08 E-value=6.5e-08 Score=96.03 Aligned_cols=257 Identities=9% Similarity=0.059 Sum_probs=158.3
Q ss_pred EEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 101 IVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 101 i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
++..++.|+.++.++.+..+|.++|+.+-.... ......+... .+| .|+.++ .+ ..+...|..+|+.
T Consensus 99 ~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~~~~~~~p~~-~~~-~v~v~~----~~------g~l~~~d~~tG~~ 165 (376)
T 3q7m_A 99 VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV-AGEALSRPVV-SDG-LVLIHT----SN------GQLQALNEADGAV 165 (376)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTCCEEEEEEC-SSCCCSCCEE-ETT-EEEEEC----TT------SEEEEEETTTCCE
T ss_pred ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeC-CCceEcCCEE-ECC-EEEEEc----CC------CeEEEEECCCCcE
Confidence 445588999999999999999999998865554 2222222222 234 555433 23 4677778888886
Q ss_pred CcccceeeeccccCc------eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC-c--------EEEEEEcC--
Q 011452 181 DAGFALFESESLKWP------GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-N--------VQEIKISP-- 243 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~------~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~-~--------V~~VafSp-- 243 (485)
+|.......+ ...... +|. +..++.++.+..+|+++|+.+...... . +..+.-+|
T Consensus 166 -----~W~~~~~~~~~~~~~~~~~~~~--~~~-v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~ 237 (376)
T 3q7m_A 166 -----KWTVNLDMPSLSLRGESAPTTA--FGA-AVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV 237 (376)
T ss_dssp -----EEEEECCC-----CCCCCCEEE--TTE-EEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE
T ss_pred -----EEEEeCCCCceeecCCCCcEEE--CCE-EEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE
Confidence 4543211111 122332 455 445677999999999999988776421 0 11111223
Q ss_pred -CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc-CCC
Q 011452 244 -GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT-EFM 321 (485)
Q Consensus 244 -g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g-h~~ 321 (485)
++.+.+.+ .++.|..+|.++|+.+..... .....+. .+++.+.++..++.|..+|..+|+.+-.... ...
T Consensus 238 ~~~~v~~~~---~~g~l~~~d~~tG~~~w~~~~--~~~~~~~---~~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~ 309 (376)
T 3q7m_A 238 VNGVVFALA---YNGNLTALDLRSGQIMWKREL--GSVNDFI---VDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHR 309 (376)
T ss_dssp ETTEEEEEC---TTSCEEEEETTTCCEEEEECC--CCEEEEE---EETTEEEEEETTCCEEEEETTTCCEEEEECTTTTS
T ss_pred ECCEEEEEe---cCcEEEEEECCCCcEEeeccC--CCCCCce---EECCEEEEEcCCCeEEEEECCCCcEEEeecccCCC
Confidence 55665552 347899999999999987763 2333333 2478899999999999999999998765531 122
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
.+.+.+. .++.+++...++.|.++|.+ |+++..++..... +.+.....+| .|..++. +|.|
T Consensus 310 ~~~~~~~-~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~-----~~~~~~~~~~-~l~v~~~-----------~G~l 371 (376)
T 3q7m_A 310 LLTSPVL-YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSG-----FQTEPVAADG-KLLIQAK-----------DGTV 371 (376)
T ss_dssp CCCCCEE-ETTEEEEECTTSEEEEEETTTCCEEEEEECCTTC-----BCSCCEEETT-EEEEEBT-----------TSCE
T ss_pred cccCCEE-ECCEEEEEeCCCeEEEEECCCCcEEEEEecCCCc-----ceeCCEEECC-EEEEEeC-----------CCEE
Confidence 2222222 35555544449999999985 9998877653222 2211111244 4555554 6888
Q ss_pred EEEe
Q 011452 401 NISN 404 (485)
Q Consensus 401 klWd 404 (485)
..+|
T Consensus 372 ~~~~ 375 (376)
T 3q7m_A 372 YSIT 375 (376)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8876
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=3.6e-08 Score=97.57 Aligned_cols=175 Identities=13% Similarity=0.062 Sum_probs=122.6
Q ss_pred CeEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC-cceeEEEEEecCCCEEEEEe-CC
Q 011452 225 YTMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQFNEKLLVKQ-EN 299 (485)
Q Consensus 225 g~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~~~~lls~s-~D 299 (485)
++.+.+++ + ...+.++|+|++.|..+++...+.+|.+.|+++|+.++++.-.. .....+++ ++++|.+.. .+
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~---~g~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTL---LNEKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEE---ETTEEEEEETTC
T ss_pred ceEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEE---eCCEEEEEEecC
Confidence 45566664 3 34789999997787777554345799999999999999976211 12224554 366777765 78
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
+++-++|..+++.+.++.-.... ...++|||+.|..+. +++|.+.|.. .+.+.++.--....+-...+.+.|. ||
T Consensus 86 ~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg 162 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG 162 (266)
T ss_dssp SEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC
Confidence 99999999999998887422122 244677887776666 8899999996 7888777622111111126788888 88
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++.+..-. +++|-+-|..||+.+++|.-
T Consensus 163 ~lyvn~~~-----------~~~V~vID~~tg~V~~~I~~ 190 (266)
T 2iwa_A 163 EVWANIWQ-----------TDCIARISAKDGTLLGWILL 190 (266)
T ss_dssp EEEEEETT-----------SSEEEEEETTTCCEEEEEEC
T ss_pred EEEEecCC-----------CCeEEEEECCCCcEEEEEEC
Confidence 66555432 58999999999999999963
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-06 Score=96.85 Aligned_cols=323 Identities=11% Similarity=0.095 Sum_probs=198.8
Q ss_pred cccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcc---cEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADE---VIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~---~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
..+.|.+|... ...|-.++.+| +..||.++++... +...... .|++|+..++|..++... + .
T Consensus 86 ~~n~I~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~t~-----~-------g 151 (795)
T 4a2l_A 86 ANDISRIVKTDSQGRVWIGTRDG-LSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLISTP-----E-------G 151 (795)
T ss_dssp SCSCEEEEEECTTSCEEEEESSC-EEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEEET-----T-------E
T ss_pred cccceeEEEECCCCCEEEEeCCc-hheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEEEC-----C-------c
Confidence 35679999888 44566677777 5678988776543 2221111 289999999998776522 2 3
Q ss_pred EEEeEeccCCcCcccceeee-ccccC-ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE---cCCcEEEEEEcCC
Q 011452 170 TRIEYIRRGKPDAGFALFES-ESLKW-PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SDKNVQEIKISPG 244 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~-~~~~~-~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl---~~~~V~~VafSpg 244 (485)
+.+++..++++.. +.. ..... +..+.++ ++|++.+. ..++-+..||.++++..... ....|.+|...++
T Consensus 152 l~~~~~~~~~~~~----~~~~~~~~~~i~~i~~d-~~g~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~ 225 (795)
T 4a2l_A 152 LIMFDIKESKFID----DSFSTAMHKTIASTLYR-QGDQIYIG-TSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSP 225 (795)
T ss_dssp EEEEETTTTEEEC----SSSCHHHHTCCEEEEEE-ETTEEEEE-ESSSCEEEEETTTCCEEECC----CCCEEEEEEEET
T ss_pred eEEEECCCCEEEe----ccCCCCCCcceEEEEEC-CCCCEEEE-ECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCC
Confidence 5556654544311 111 00112 5677787 68888774 44445888998887754322 2457999998876
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-------CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-------~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~ 317 (485)
+.+.++... .-|.++|..+++...-.... ...+.++... .++.|.++..+ -|.+||..+++......
T Consensus 226 g~lwigt~~---~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~g~lWigt~~-Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 226 TRIWVATEG---AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMD--SQNRLWIGTFN-DLNIYHEGTDSFASYSS 299 (795)
T ss_dssp TEEEEEEBS---SCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEEC--TTSCEEEEESS-CEEEEETTTTEEEEECC
T ss_pred CCEEEEECC---CCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEc--CCCCEEEEeCC-hhheEcCCCCeEEEEec
Confidence 666666432 35889999887654332111 1345566542 25567777666 69999999888765532
Q ss_pred c-------CCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 318 T-------EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 318 g-------h~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
. ....|.++...++|.+.+...++-|..++........+.... ..-+...|.+++..++|.+.+. +.
T Consensus 300 ~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiG-t~--- 375 (795)
T 4a2l_A 300 NPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIG-TN--- 375 (795)
T ss_dssp CTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEE-ES---
T ss_pred CCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEE-EC---
Confidence 2 235799999999999887666777889998633333332110 0001223899999999998884 33
Q ss_pred CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 389 DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 389 ~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
++-|..||..+++...-.....+ + . ... ....|.+++.+++|
T Consensus 376 --------~~Gl~~~~~~~~~~~~~~~~~~~-~--------~----------~~l-----------~~~~v~~i~~d~~g 417 (795)
T 4a2l_A 376 --------DGGLNLYNPITQRFTSYTLQEDE-S--------A----------RGI-----------GSNNIKAVYVDEKK 417 (795)
T ss_dssp --------SSCEEEECTTTCCEEEECCC-------------------------CC-----------SCSCEEEEEEETTT
T ss_pred --------CCCeEEEcCCCCcEEEEecCCCC-c--------c----------cCC-----------CCccEEEEEEcCCC
Confidence 46799999888876543322110 0 0 000 00279999999999
Q ss_pred CEEEEecCCCcEEEcc
Q 011452 469 NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 469 ~~LaSgs~DgtVklWd 484 (485)
+.|.-|+.++-|.++|
T Consensus 418 ~~lWigt~~~Gl~~~d 433 (795)
T 4a2l_A 418 SLVYIGTHAGGLSILH 433 (795)
T ss_dssp TEEEEEETTTEEEEEE
T ss_pred CEEEEEeCcCceeEEe
Confidence 9555566654455554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-07 Score=85.29 Aligned_cols=190 Identities=10% Similarity=0.083 Sum_probs=124.6
Q ss_pred eEEEEeeCCCcEEEeecCCCeE-------EEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTM-------LYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~-------l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+.|..+.. +.|+.+|+..... +..........++++| ++.+..+... .+.|..+++.++.....+....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~--~~~I~~~~~~g~~~~~~~~~~~ 78 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDIS--EPSIGRASLHGGEPTTIIRQDL 78 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETT--TTEEEEEESSSCCCEEEECTTC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECC--CCEEEEEecCCCCcEEEEECCC
Confidence 44444443 4788888765432 2222335678999997 6777776543 3689999987665443343323
Q ss_pred cceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe---CCcEEEEeCCCcE
Q 011452 278 HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR---NRTVAVWNFRGEL 352 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s---D~TIklWd~~G~l 352 (485)
.....+++. ++++.|.++ ...+.|.++|+...............+..+++.|+ |.++++.. .+.|...+++|+.
T Consensus 79 ~~p~~ia~d-~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 79 GSPEGIALD-HLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157 (267)
T ss_dssp CCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred CCccEEEEE-ecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC
Confidence 456688886 556777776 47789999999854433333333468999999995 66666664 2688888998776
Q ss_pred EEEee-cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 353 VTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 353 l~tl~-gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.+.+. ....+ -+.++|+||++.|.-+.. ..+.|...|+.+++....+
T Consensus 158 ~~~~~~~~~~~-----P~gia~d~~~~~lyv~d~----------~~~~I~~~~~~g~~~~~~~ 205 (267)
T 1npe_A 158 RRILAQDNLGL-----PNGLTFDAFSSQLCWVDA----------GTHRAECLNPAQPGRRKVL 205 (267)
T ss_dssp CEEEECTTCSC-----EEEEEEETTTTEEEEEET----------TTTEEEEEETTEEEEEEEE
T ss_pred cEEEEECCCCC-----CcEEEEcCCCCEEEEEEC----------CCCEEEEEecCCCceEEEe
Confidence 55553 22222 689999999877765543 2589999998755443333
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.00 E-value=9.5e-08 Score=101.32 Aligned_cols=200 Identities=12% Similarity=0.075 Sum_probs=132.6
Q ss_pred CCe-EEEEeeCCCcEEEeecCCC----eEEEEEc--------C-CcEEEEEEcCCceEEEEEcCCC----CeeEEEEecC
Q 011452 204 NGK-VLTYSAQDSIYKVFDLKNY----TMLYSIS--------D-KNVQEIKISPGIMLLIFTKASG----HVPLKILSIE 265 (485)
Q Consensus 204 nG~-~Las~s~D~tiKlWdl~~g----~~l~tl~--------~-~~V~~VafSpg~~ll~sss~~~----D~tIklWdi~ 265 (485)
+++ +++++-.+++|.|.|+++- ++..++. + ..=..+..+|++ +++++.++. .+.|-+.|.+
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~ 172 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY 172 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC
Confidence 454 4566778999999999865 6778883 2 134568889988 555554432 2689999999
Q ss_pred CCeEEEEeecCCcc---eeEEEEEecCCCEEEEEe-------------------CCCcEEEEECCCCeeEEeccc--CCC
Q 011452 266 DGTVLKSFNHLLHR---NKKVDFIEQFNEKLLVKQ-------------------ENENLQILDVRNFELTEVSRT--EFM 321 (485)
Q Consensus 266 tG~~L~tl~~~~~~---~~~V~f~~~~~~~lls~s-------------------~D~tIkIWDv~tg~~~~~l~g--h~~ 321 (485)
|++++.+..--.+. -..+.|+ |+...++++. .+.+|.+||+.+++.++++.- ...
T Consensus 173 T~~v~~~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~ 251 (462)
T 2ece_A 173 SFEPLGKWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR 251 (462)
T ss_dssp TCCEEEECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred CCeEEEEEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence 99999999721111 2246666 5666666663 389999999999988887643 223
Q ss_pred ceEEEEE--cCCCcEEEEEe-------CCcEEEEeCC-CcE--EEEe--ecCC-CC-CC---------CCCeeEEEECCC
Q 011452 322 TPSAFIF--LYENQLFLTFR-------NRTVAVWNFR-GEL--VTSF--EDHL-LW-HP---------DCNTNNIYITSD 376 (485)
Q Consensus 322 ~v~avaF--spdg~llaS~s-------D~TIklWd~~-G~l--l~tl--~gH~-~~-~~---------~~~v~svafSpD 376 (485)
.+..+.| +|+|+++-.++ +++|-+|..+ |+. ++.+ .... .+ -+ ......|.+|||
T Consensus 252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D 331 (462)
T 2ece_A 252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD 331 (462)
T ss_dssp EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence 4555655 99998755432 4578777764 542 2221 1110 00 00 012578999999
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCC---CCeEEEEec
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNIL---TGKCLAKIR 415 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~---TGk~l~tl~ 415 (485)
|++|-.++.. .++|.++|+. +.+.+.++.
T Consensus 332 GrfLYVSnrg----------~d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 332 DKFLYLSLWG----------IGEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp SCEEEEEETT----------TTEEEEEECSSTTSCEEEEEEE
T ss_pred CCEEEEEeCC----------CCEEEEEEecCCCCcEEEEEEE
Confidence 9999998872 5899999985 346676664
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.3e-07 Score=98.89 Aligned_cols=279 Identities=14% Similarity=0.071 Sum_probs=172.6
Q ss_pred ecCEEEEEeC-CCeEEeeec-ccCcEEEEeecCCcc----------cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 104 ARDIVFALAQ-SGVCAAFCR-ETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 104 s~~~ias~s~-dgtiklW~~-~tG~~l~tl~g~~~~----------~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
.+++|+.++. ++.+..+|. +||+.+=........ .-+++++ ++..|+.++ .+ ..+.
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~----~d------g~l~ 128 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQ----AN------GHLL 128 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEEC----TT------SEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEe----CC------CEEE
Confidence 4788888888 899999999 899988655432111 1123444 345565543 22 3566
Q ss_pred EeEeccCCcCcccceeeecccc-----Cce-EEEEeCCCCeEEEEeeC-----CCcEEEeecCCCeEEEEEcCC-cE---
Q 011452 172 IEYIRRGKPDAGFALFESESLK-----WPG-FVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNYTMLYSISDK-NV--- 236 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~-----~~~-~V~Fs~pnG~~Las~s~-----D~tiKlWdl~~g~~l~tl~~~-~V--- 236 (485)
..|..+|++ +|+..... .+. .-... +|++++.++. |+.|..+|+++|+++-++... ..
T Consensus 129 alD~~tG~~-----~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~ 201 (571)
T 2ad6_A 129 ALDAKTGKI-----NWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSV 201 (571)
T ss_dssp EEETTTCCE-----EEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHH
T ss_pred EEECCCCCE-----EEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCcccc
Confidence 678788886 45532111 011 11121 6777776553 899999999999998776421 11
Q ss_pred ------------------------------------EEEEEcC-CceEEEEEcCC---------CC----eeEEEEecCC
Q 011452 237 ------------------------------------QEIKISP-GIMLLIFTKAS---------GH----VPLKILSIED 266 (485)
Q Consensus 237 ------------------------------------~~VafSp-g~~ll~sss~~---------~D----~tIklWdi~t 266 (485)
..+++.| .+.+....... .| ..|.-+|.+|
T Consensus 202 ~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~t 281 (571)
T 2ad6_A 202 RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDT 281 (571)
T ss_dssp TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTT
T ss_pred ccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCC
Confidence 1356665 34544442210 12 2699999999
Q ss_pred CeEEEEeecCCcc------eeE-EEEE-ecCCC--E-EEEEeCCCcEEEEECCCCeeEEecccCC------------Cce
Q 011452 267 GTVLKSFNHLLHR------NKK-VDFI-EQFNE--K-LLVKQENENLQILDVRNFELTEVSRTEF------------MTP 323 (485)
Q Consensus 267 G~~L~tl~~~~~~------~~~-V~f~-~~~~~--~-lls~s~D~tIkIWDv~tg~~~~~l~gh~------------~~v 323 (485)
|+.+..++...+. ..+ +.+. ..++. + ++.++.++.+.++|.++|+.+-...-.. ..+
T Consensus 282 G~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p 361 (571)
T 2ad6_A 282 GMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTP 361 (571)
T ss_dssp CCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSE
T ss_pred CcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCce
Confidence 9999888732111 112 2221 12343 3 4557789999999999999876542111 011
Q ss_pred ---------------------------EEEEEcCCCcEEEEEe-------------------------------------
Q 011452 324 ---------------------------SAFIFLYENQLFLTFR------------------------------------- 339 (485)
Q Consensus 324 ---------------------------~avaFspdg~llaS~s------------------------------------- 339 (485)
..++|+|+..+|....
T Consensus 362 ~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~ 441 (571)
T 2ad6_A 362 VRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKK 441 (571)
T ss_dssp EECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSC
T ss_pred ecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCC
Confidence 2357888877665542
Q ss_pred -CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 340 -NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 340 -D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++.|..||.. |+.+-+++.... +.+..+...|.++..++. |+.|..+|..||+++.+++-.
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~------~~~~~~~t~gg~v~~g~~-----------dg~l~a~D~~tG~~lw~~~~~ 504 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFA------AWGGTLYTKGGLVWYATL-----------DGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred CCCeEEEEECCCCCEEEEecCCCC------ccceeEEECCCEEEEEcC-----------CCeEEEEECCCCCEEEEEeCC
Confidence 4789999995 999888764322 223333344566666765 799999999999999998754
Q ss_pred C
Q 011452 418 N 418 (485)
Q Consensus 418 ~ 418 (485)
.
T Consensus 505 ~ 505 (571)
T 2ad6_A 505 S 505 (571)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=6.8e-06 Score=90.60 Aligned_cols=312 Identities=10% Similarity=0.062 Sum_probs=194.0
Q ss_pred eEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec
Q 011452 98 IIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (485)
Q Consensus 98 V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~ 176 (485)
|.+|... +..|..++.++-+..|+.++++........+...|++|+..++|..+|... .+ -+.+++..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~----~~-------Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE----GA-------GLFLINPK 243 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB----SS-------CEEEEETT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC----CC-------CeEEEeCC
Confidence 7888876 555666776555777888777655432222345799999999998776421 11 34445544
Q ss_pred cCCcCcccceeeec-------cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE---------cCCcEEEEE
Q 011452 177 RGKPDAGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---------SDKNVQEIK 240 (485)
Q Consensus 177 ~G~~~~~~~lf~~~-------~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl---------~~~~V~~Va 240 (485)
.+++. .+... ....+.++..+ ++|.+.+.. .+ -+.+||.++++...-. ....|.+|.
T Consensus 244 ~~~~~----~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 316 (795)
T 4a2l_A 244 TKEIK----NYLHSPSNPKSISSNYIRSLAMD-SQNRLWIGT-FN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF 316 (795)
T ss_dssp TTEEE----EECCCTTCTTSCSCSBEEEEEEC-TTSCEEEEE-SS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE
T ss_pred CCeEE----EeecCCCCccccCCCeEEEEEEc-CCCCEEEEe-CC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE
Confidence 44331 12111 12345677786 688877644 34 5888998888754332 235799999
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec-------CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-------LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT 313 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~-------~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~ 313 (485)
..+++.+-++... +-|..++..+++. ..+.. ....|.++.. ..++.|-++..++-|..||..+++..
T Consensus 317 ~D~~g~lWigt~~---~Gl~~~~~~~~~~-~~~~~~~~~~~l~~~~V~~i~~--d~~g~lWiGt~~~Gl~~~~~~~~~~~ 390 (795)
T 4a2l_A 317 MDSQGGMWLGTYF---GGLNYYHPIRNRF-KNIRNIPYKNSLSDNVVSCIVE--DKDKNLWIGTNDGGLNLYNPITQRFT 390 (795)
T ss_dssp ECTTSCEEEEESS---SCEEEECGGGGSS-EEECCCTTSSSCSCSSEEEEEE--CTTSCEEEEESSSCEEEECTTTCCEE
T ss_pred EeCCcCEEEEECC---CCeEEeCCCcccc-eEEcCCCCCCCCCCCeeEEEEE--CCCCCEEEEECCCCeEEEcCCCCcEE
Confidence 9986666666432 4688888766543 22321 1123555553 33567888888888999999988765
Q ss_pred Eeccc--------CCCceEEEEEcCCCc-EEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 314 EVSRT--------EFMTPSAFIFLYENQ-LFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 314 ~~l~g--------h~~~v~avaFspdg~-llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
..... ....|.+++..++|+ +.+...++-|.++|.+ |+. ..+......-+...|.+++..++|.+.+..
T Consensus 391 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lwigt 469 (795)
T 4a2l_A 391 SYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLWLGT 469 (795)
T ss_dssp EECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEEEEE
T ss_pred EEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEEEEe
Confidence 54322 135799999999999 6665446779999997 554 444311000111238999999999988865
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
. +-|.++|..+++... +....+.. .. ....|.++.
T Consensus 470 ~-------------~Gl~~~~~~~~~~~~-~~~~~~~~--------------------~~-----------~~~~i~~i~ 504 (795)
T 4a2l_A 470 L-------------SALVRFNPEQRSFTT-IEKEKDGT--------------------PV-----------VSKQITTLF 504 (795)
T ss_dssp S-------------SCEEEEETTTTEEEE-CCBCTTCC--------------------BC-----------CCCCEEEEE
T ss_pred c-------------CceeEEeCCCCeEEE-cccccccc--------------------cc-----------CCceEEEEE
Confidence 3 348889998887643 22110000 00 002799999
Q ss_pred EcCCCCEEEEecCCCcE
Q 011452 464 YDEDRNEIYTGNRHGLV 480 (485)
Q Consensus 464 fspDg~~LaSgs~DgtV 480 (485)
.+++|+..+... +|..
T Consensus 505 ~d~~g~lWigt~-~Gl~ 520 (795)
T 4a2l_A 505 RDSHKRLWIGGE-EGLS 520 (795)
T ss_dssp ECTTCCEEEEES-SCEE
T ss_pred ECCCCCEEEEeC-CceE
Confidence 999999877665 5543
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.99 E-value=6.1e-07 Score=87.60 Aligned_cols=223 Identities=10% Similarity=0.027 Sum_probs=143.2
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
.++..++++ ++|+++++...++.|..||.++. ....+. ......|+|+|++.++++........|-.+|..+|+...
T Consensus 32 ~~pegia~~-~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~ 109 (306)
T 2p4o_A 32 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGN-QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET 109 (306)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCC-EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred CCcceEEEC-CCCCEEEEeCCCCeEEEECCCCc-eEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence 467789998 69998888878899999998754 333333 457899999987777766432211246666778888643
Q ss_pred Eeec-CCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCee-EE---------ecccCCCceEEEEEcCCCc-EEEEE
Q 011452 272 SFNH-LLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFEL-TE---------VSRTEFMTPSAFIFLYENQ-LFLTF 338 (485)
Q Consensus 272 tl~~-~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~-~~---------~l~gh~~~v~avaFspdg~-llaS~ 338 (485)
.... .......+++ ..+..+++.. .++.|..+|..+++. +. ...+....++.+ +||++ ++++-
T Consensus 110 ~~~~~~~~~~~g~~~--~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d 185 (306)
T 2p4o_A 110 LLTLPDAIFLNGITP--LSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN 185 (306)
T ss_dssp EEECTTCSCEEEEEE--SSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred EEeCCCccccCcccc--cCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence 3221 1122234443 2345666654 688999999887532 11 111233456776 88886 55666
Q ss_pred e-CCcEEEEeCC--CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE-
Q 011452 339 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA- 412 (485)
Q Consensus 339 s-D~TIklWd~~--G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~- 412 (485)
+ .++|..++++ |++ ...+..- .. -..+++++||.+.++... .+.|.++|.. |+...
T Consensus 186 ~~~~~I~~~~~~~~g~~~~~~~~~~~-~~-----P~gi~vd~dG~l~va~~~-----------~~~V~~~~~~-G~~~~~ 247 (306)
T 2p4o_A 186 TEKMLLLRIPVDSTDKPGEPEIFVEQ-TN-----IDDFAFDVEGNLYGATHI-----------YNSVVRIAPD-RSTTII 247 (306)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEES-CC-----CSSEEEBTTCCEEEECBT-----------TCCEEEECTT-CCEEEE
T ss_pred CCCCEEEEEEeCCCCCCCccEEEecc-CC-----CCCeEECCCCCEEEEeCC-----------CCeEEEECCC-CCEEEE
Confidence 6 8899999985 442 2222211 11 357999999998877543 5789999964 77633
Q ss_pred -EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc---CCCCEEEEecCC
Q 011452 413 -KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD---EDRNEIYTGNRH 477 (485)
Q Consensus 413 -tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs---pDg~~LaSgs~D 477 (485)
.+... +...++++|. ||++.||-++..
T Consensus 248 ~~~~~~--------------------------------------~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 248 AQAEQG--------------------------------------VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp ECGGGT--------------------------------------CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eecccc--------------------------------------cCCceEEEEecccCCCCEEEEECCC
Confidence 22211 1278899999 999888776643
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-08 Score=95.42 Aligned_cols=259 Identities=9% Similarity=0.010 Sum_probs=166.8
Q ss_pred ceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 97 KIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 97 ~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
.+..+++. +..|..++.+ +..+|. +|+.+-.... +.....+..+. +|. |..++ .+ ..+..++.
T Consensus 61 ~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~-~~~~~~~~~~~-~~~-l~v~t----~~------~~l~~~d~ 124 (330)
T 3hxj_A 61 IECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT-KKAIVSDFTIF-EDI-LYVTS----MD------GHLYAINT 124 (330)
T ss_dssp EEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC------CCEEEE-TTE-EEEEC----TT------SEEEEECT
T ss_pred cccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC-CCCcccCceEE-CCE-EEEEe----cC------CEEEEEcC
Confidence 34555665 5667777766 777786 6776554433 22233344444 554 44433 22 35556664
Q ss_pred ccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc
Q 011452 176 RRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK 252 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss 252 (485)
. |+. ++... ....+..+.++ ++|.+++ ++.++.+..+|.+ |+.+..+. ...+.++.+.+++.+.++.
T Consensus 125 ~-g~~-----~~~~~~~~~~~~~~~~~-~~g~l~v-gt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t- 194 (330)
T 3hxj_A 125 D-GTE-----KWRFKTKKAIYATPIVS-EDGTIYV-GSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS- 194 (330)
T ss_dssp T-SCE-----EEEEECSSCCCSCCEEC-TTSCEEE-ECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-
T ss_pred C-CCE-----EEEEcCCCceeeeeEEc-CCCEEEE-EcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-
Confidence 4 654 33331 11122345665 5787655 5678999999998 88765554 4567778887666666653
Q ss_pred CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC
Q 011452 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN 332 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg 332 (485)
..|..+| .+|+.+..+......+..+.+. + ++.|.++..++.|..+|. +++.+.........+.++++.++|
T Consensus 195 ----~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~-~-~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g 266 (330)
T 3hxj_A 195 ----DKVYAIN-PDGTEKWNFYAGYWTVTRPAIS-E-DGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD 266 (330)
T ss_dssp ----SSEEEEC-TTSCEEEEECCSSCCCSCCEEC-T-TSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS
T ss_pred ----CEEEEEC-CCCcEEEEEccCCcceeceEEC-C-CCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC
Confidence 4789999 8999988877544456666653 2 457888888888888885 565555554444445566777789
Q ss_pred cEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 333 QLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 333 ~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
.+.+...++.|..+|.+|+.+..+.-.... +.++++.++|++.+... +|.+++-..+
T Consensus 267 ~l~v~t~~ggl~~~d~~g~~~~~~~~~~~~-----~~~~~~d~~g~l~~gt~------------~G~~~~~~~~ 323 (330)
T 3hxj_A 267 TIYFGSYDGHLYAINPDGTEKWNFETGSWI-----IATPVIDENGTIYFGTR------------NGKFYALFNL 323 (330)
T ss_dssp CEEEECTTCEEEEECTTSCEEEEEECSSCC-----CSCCEECTTCCEEEECT------------TSCEEEEEC-
T ss_pred eEEEecCCCCEEEECCCCcEEEEEEcCCcc-----ccceEEcCCCEEEEEcC------------CCeEEEEecc
Confidence 887766688899999889988777643332 77899999999888543 6899887654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.2e-07 Score=90.77 Aligned_cols=194 Identities=11% Similarity=0.016 Sum_probs=140.7
Q ss_pred ceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 195 PGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
+..++|+ +||.+.++.+. +++|.+.|+++|+.+.++. + .....+++.. +.+.++.. .++++-++|.+++++
T Consensus 23 ~~Gl~~~-~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~--~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYA-ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVW--LKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEEC-STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEET--TCSEEEEEETTTTEE
T ss_pred cccEEEe-CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEe--cCCEEEEEECCCCcE
Confidence 3478997 67888887764 6899999999999998875 2 2445677774 45555543 347999999999999
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc-c----CCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR-T----EFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~-g----h~~~v~avaFspdg~llaS~s-D~TI 343 (485)
+.++..-...-+.++ +++++|.++..+++|.++|.++.+.+..+. + ....++.+.|. +|+++++.. +++|
T Consensus 99 ~~~i~~g~~~g~glt---~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V 174 (266)
T 2iwa_A 99 IKNFTHQMKDGWGLA---TDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCI 174 (266)
T ss_dssp EEEEECCSSSCCEEE---ECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEE
T ss_pred EEEEECCCCCeEEEE---ECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeE
Confidence 999973212223333 578888888778999999999988766653 1 11247888888 889988887 8899
Q ss_pred EEEeCC-CcEEEEeecCC--------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 344 AVWNFR-GELVTSFEDHL--------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 344 klWd~~-G~ll~tl~gH~--------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
.+=|.. |+.+.++.-.. ........+.|+|+|+|+.|..+++ ..+++..-++.
T Consensus 175 ~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk----------~~~~v~~i~l~ 236 (266)
T 2iwa_A 175 ARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK----------LWPKLFEIKLH 236 (266)
T ss_dssp EEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET----------TCSEEEEEEEE
T ss_pred EEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC----------CCCeEEEEEEe
Confidence 999995 99999886321 0001123689999999988887775 24666655544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-06 Score=94.86 Aligned_cols=281 Identities=14% Similarity=0.092 Sum_probs=167.0
Q ss_pred ecCEEEEEeCCCeEEeeecccCcEEEEeecCCcc--------cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE--------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 104 s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~--------~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
.++.|+.++.++.+..+|.+||+.+=........ .-+++++ .+..|+.++. + ..+.-.|.
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~----d------g~l~AlD~ 134 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTL----D------ASVVALNK 134 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEET----T------TEEEEEES
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeC----C------CEEEEEEC
Confidence 4677777777444889999999987665442111 0133444 3455655442 2 25555677
Q ss_pred ccCCcCcccceeeecccc----C-ce-E-EEEe-CCCCe-EEEEee------CCCcEEEeecCCCeEEEEEcCCc--E--
Q 011452 176 RRGKPDAGFALFESESLK----W-PG-F-VEFD-DVNGK-VLTYSA------QDSIYKVFDLKNYTMLYSISDKN--V-- 236 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~----~-~~-~-V~Fs-~pnG~-~Las~s------~D~tiKlWdl~~g~~l~tl~~~~--V-- 236 (485)
.+|++ +|+..... + +. . +... ..+|+ +|..++ .++.|.-+|+++|+++-+.+... +
T Consensus 135 ~TG~~-----~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p 209 (582)
T 1flg_A 135 NTGKV-----VWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGR 209 (582)
T ss_dssp SSCCE-----EEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEE
T ss_pred CCCCE-----EeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCcccccc
Confidence 78886 45532110 0 00 1 2232 12344 333333 38999999999999987764311 1
Q ss_pred ---------------------------------------EEEEEcC-CceEEEEEcC-----------CC------C---
Q 011452 237 ---------------------------------------QEIKISP-GIMLLIFTKA-----------SG------H--- 256 (485)
Q Consensus 237 ---------------------------------------~~VafSp-g~~ll~sss~-----------~~------D--- 256 (485)
...++.| .+++.+.... .. |
T Consensus 210 ~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~ 289 (582)
T 1flg_A 210 LNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLY 289 (582)
T ss_dssp ETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTT
T ss_pred ccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcc
Confidence 1245665 4555544321 11 2
Q ss_pred -eeEEEEecCCCeEEEEeecCCcc------ee-EEEEEe--cCCC---EEEEEeCCCcEEEEECCCCeeEEecccCC--C
Q 011452 257 -VPLKILSIEDGTVLKSFNHLLHR------NK-KVDFIE--QFNE---KLLVKQENENLQILDVRNFELTEVSRTEF--M 321 (485)
Q Consensus 257 -~tIklWdi~tG~~L~tl~~~~~~------~~-~V~f~~--~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~gh~--~ 321 (485)
..|.-+|.+||+.+-.++...+. .. .+.+.. .+++ .++.++.|+.+.++|.++|+++-...-.. .
T Consensus 290 ~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 290 TSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp CSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred cceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 58999999999999988631111 11 222221 2443 45557899999999999999875432221 0
Q ss_pred ce-------------------------------------------EEEEEcCCCcEEEEE--------------------
Q 011452 322 TP-------------------------------------------SAFIFLYENQLFLTF-------------------- 338 (485)
Q Consensus 322 ~v-------------------------------------------~avaFspdg~llaS~-------------------- 338 (485)
+. ..++|+|+..++...
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 00 134567765554332
Q ss_pred -------------e-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE
Q 011452 339 -------------R-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS 403 (485)
Q Consensus 339 -------------s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW 403 (485)
. +++|..||.. |+.+-+...+... ++-.+...|.+++.++. |+.++.+
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~------~~g~~~tagglvf~g~~-----------dg~l~A~ 512 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAF 512 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEE
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC------cccceEeCCCEEEEECC-----------CCcEEEE
Confidence 1 5789999995 9988777644322 22222234667777876 7999999
Q ss_pred eCCCCeEEEEecCCC
Q 011452 404 NILTGKCLAKIRASN 418 (485)
Q Consensus 404 dl~TGk~l~tl~gH~ 418 (485)
|..||+.|.+++...
T Consensus 513 D~~tG~~lW~~~~~~ 527 (582)
T 1flg_A 513 DAKSGKELWKFQTGS 527 (582)
T ss_dssp ETTTCCEEEEEECSS
T ss_pred ECCCCCEEEEecCCC
Confidence 999999999987644
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.6e-08 Score=107.54 Aligned_cols=262 Identities=11% Similarity=0.111 Sum_probs=172.1
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeec--------------------------------------CCcccEEEEEEee---
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNV--------------------------------------TADEVIRSLFYNK--- 146 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g--------------------------------------~~~~~i~sv~~sp--- 146 (485)
+.|++++|.++++-+.++++|..+.- ...+-..-+..|.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 67899999999999998888775311 0011122255555
Q ss_pred --CCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEEEEee-----------
Q 011452 147 --NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSA----------- 212 (485)
Q Consensus 147 --dg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~Las~s----------- 212 (485)
||++|.. .+...+ .+-+-|+.+.++++ +.+--....+..++|.. |||+++..++
T Consensus 98 ~~DG~~lfV--nd~~~~-------rVavIdl~t~~~~~---ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~ 165 (595)
T 1fwx_A 98 KYDGRFLFM--NDKANT-------RVARVRCDVMKCDA---ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGT 165 (595)
T ss_dssp EEEEEEEEE--EETTTT-------EEEEEETTTTEEEE---EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSS
T ss_pred CcCCCEEEE--EcCCCC-------EEEEEECCCceEee---EEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCc
Confidence 8887766 223233 44444666555432 12211112244667754 7888876663
Q ss_pred -------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC--------------C--------------
Q 011452 213 -------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG--------------H-------------- 256 (485)
Q Consensus 213 -------~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~--------------D-------------- 256 (485)
.++++-+.|.++.+.+.++. +.+-..+++||++.++..++... |
T Consensus 166 ~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 166 NMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp STTCGGGEEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred ccccccccCceEEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 35689999999999888886 33445688998666666555433 1
Q ss_pred --------eeEEEEecCC--CeE-EEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe------------e
Q 011452 257 --------VPLKILSIED--GTV-LKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFE------------L 312 (485)
Q Consensus 257 --------~tIklWdi~t--G~~-L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~------------~ 312 (485)
+.|.+.|..+ |+. +.++.-- ..-..|.|+ |||.++++++ .+.+|-++|+.+.+ .
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~s-PDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred cCCCeeEECcEEEEeCcccCCceeEEEEecC-CCceEEEEc-CCCCEEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 2588999988 766 6666521 223478885 8898888875 89999999999763 2
Q ss_pred EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-----------CcEEEEeecCCCC-CCCCCeeEEEECCCCCE
Q 011452 313 TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-----------GELVTSFEDHLLW-HPDCNTNNIYITSDQDL 379 (485)
Q Consensus 313 ~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-----------G~ll~tl~gH~~~-~~~~~v~svafSpDG~~ 379 (485)
..... -...++-++|+|||...++.- |.+|-+||++ .+.+.++.-|... | .+.-..+.++|||++
T Consensus 324 ~~~v~-vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh-~~~~~g~t~~~DGk~ 401 (595)
T 1fwx_A 324 VAEPE-LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH-LKTVMGETLDATNDW 401 (595)
T ss_dssp EECCB-CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-EEETTTTSTTCCSSE
T ss_pred EEEcC-CCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-ceeccceEeCCCCCE
Confidence 22221 123689999999996666666 9999999984 3578888876431 1 000134567999999
Q ss_pred EEEEec
Q 011452 380 IISYCK 385 (485)
Q Consensus 380 LaS~s~ 385 (485)
|++.++
T Consensus 402 l~~~Nk 407 (595)
T 1fwx_A 402 LVCLSK 407 (595)
T ss_dssp EEEEES
T ss_pred EEEcCC
Confidence 999987
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=104.05 Aligned_cols=244 Identities=13% Similarity=0.092 Sum_probs=153.0
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCC---cEEEEEEcC---CceEEEEEcCC---CCeeEEEEecCCCe
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISP---GIMLLIFTKAS---GHVPLKILSIEDGT 268 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~---~V~~VafSp---g~~ll~sss~~---~D~tIklWdi~tG~ 268 (485)
+++. +++++ .++.|+.+..+|.++|+.+-+.... ....+.-+| ++.+++..+.. .++.|..+|.+||+
T Consensus 113 ~~~~--~~~v~-v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~ 189 (668)
T 1kv9_A 113 VALW--GDKVY-VGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGK 189 (668)
T ss_dssp CEEE--BTEEE-EECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCC
T ss_pred eEEE--CCEEE-EEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCc
Confidence 4553 45554 4567999999999999998776421 111122223 56666543321 25799999999999
Q ss_pred EEEEeecC--C----------------------------ccee-EEEEEecCCCEEEEEeCCC-----------------
Q 011452 269 VLKSFNHL--L----------------------------HRNK-KVDFIEQFNEKLLVKQENE----------------- 300 (485)
Q Consensus 269 ~L~tl~~~--~----------------------------~~~~-~V~f~~~~~~~lls~s~D~----------------- 300 (485)
++.++... . +.++ .+++. +.++.+.++..++
T Consensus 190 ~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d-~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~ 268 (668)
T 1kv9_A 190 LAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYD-PELDLLYVGTGNGSPWNREVRSPGGGDNLY 268 (668)
T ss_dssp EEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEE-TTTTEEEEECCCEESSCHHHHSTTCCCCTT
T ss_pred EEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEc-CCCCEEEEeCCCCCccccCCCCCCCCCcee
Confidence 99988521 0 0111 35664 4567777776555
Q ss_pred --cEEEEECCCCeeEEeccc--CC-------CceEEEEEcCCCc---EEEEEe-CCcEEEEeCC-CcEEEEeecCC-CCC
Q 011452 301 --NLQILDVRNFELTEVSRT--EF-------MTPSAFIFLYENQ---LFLTFR-NRTVAVWNFR-GELVTSFEDHL-LWH 363 (485)
Q Consensus 301 --tIkIWDv~tg~~~~~l~g--h~-------~~v~avaFspdg~---llaS~s-D~TIklWd~~-G~ll~tl~gH~-~~~ 363 (485)
.|.-+|++||+.+-.... |. ..+....+..||+ .++.++ ++.+.++|.+ |+++....-.. .|.
T Consensus 269 ~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~ 348 (668)
T 1kv9_A 269 LSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWA 348 (668)
T ss_dssp TTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSE
T ss_pred eeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccc
Confidence 499999999998766532 32 1222233445786 677888 9999999995 99985443221 110
Q ss_pred C-----------------CC-------------CeeEEEECCCCCEEEEEecCCC-----C------------C------
Q 011452 364 P-----------------DC-------------NTNNIYITSDQDLIISYCKADS-----D------------D------ 390 (485)
Q Consensus 364 ~-----------------~~-------------~v~svafSpDG~~LaS~s~d~~-----~------------d------ 390 (485)
. .. +-..++|+|+..++.....+-. . .
T Consensus 349 ~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 428 (668)
T 1kv9_A 349 EKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADA 428 (668)
T ss_dssp EEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGC
T ss_pred cccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCcccccc
Confidence 0 00 0013788898777664322000 0 0
Q ss_pred -CC-CcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCC
Q 011452 391 -PL-AEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDR 468 (485)
Q Consensus 391 -~~-~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg 468 (485)
.. ....+|+|.-||+.||+.+.++..+. .+....+...|
T Consensus 429 ~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---------------------------------------~~~~~~~~t~g 469 (668)
T 1kv9_A 429 TDVPAAVVSGALLAWDPVKQKAAWKVPYPT---------------------------------------HWNGGTLSTAG 469 (668)
T ss_dssp CCCCGGGCEEEEEEEETTTTEEEEEEEESS---------------------------------------SCCCCEEEETT
T ss_pred CCCCCCCccceEEEEeCCCCcEEEEccCCC---------------------------------------CCcCceeEeCC
Confidence 00 11245899999999999998886543 22233445578
Q ss_pred CEEEEecCCCcEEEcc
Q 011452 469 NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 469 ~~LaSgs~DgtVklWd 484 (485)
..|+.|+.|+.|++||
T Consensus 470 g~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 470 NLVFQGTAAGQMHAYS 485 (668)
T ss_dssp TEEEEECTTSEEEEEE
T ss_pred CEEEEECCcccchhhh
Confidence 8899999999999997
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.9e-07 Score=97.96 Aligned_cols=281 Identities=13% Similarity=0.097 Sum_probs=173.4
Q ss_pred ecCEEEEEeC-CCeEEeeec-ccCcEEEEeecCCc----------ccEEEEEEeeCCCE----EEEEEeecCCCCcccce
Q 011452 104 ARDIVFALAQ-SGVCAAFCR-ETNQRICFLNVTAD----------EVIRSLFYNKNNDS----LITVSVYASDNFSSLRC 167 (485)
Q Consensus 104 s~~~ias~s~-dgtiklW~~-~tG~~l~tl~g~~~----------~~i~sv~~spdg~~----Las~S~d~~~d~stL~~ 167 (485)
.+++|+.++. ++.+..+|. +||+.+=....... ...+.++++|.+.. |+.++. +
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----d------ 130 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----D------ 130 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----T------
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----C------
Confidence 4788888888 899999999 89998865543211 12356788765555 665442 2
Q ss_pred eEEEEeEeccCCcCcccceeeecccc-----Cce-EEEEeCCCCeEEEEee-----CCCcEEEeecCCCeEEEEEcCC-c
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLK-----WPG-FVEFDDVNGKVLTYSA-----QDSIYKVFDLKNYTMLYSISDK-N 235 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~-----~~~-~V~Fs~pnG~~Las~s-----~D~tiKlWdl~~g~~l~tl~~~-~ 235 (485)
..+.-.|..+|++ +|+..... .+. .-.. .+|++++.++ .|+.|.-+|+++|+++-.+... .
T Consensus 131 g~l~AlDa~TG~~-----~W~~~~~~~~~~~~~~ssP~v--~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~ 203 (599)
T 1w6s_A 131 GNVAALNAETGET-----VWKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGP 203 (599)
T ss_dssp SEEEEEETTTCCE-----EEEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSC
T ss_pred CEEEEEECCCCCE-----EEeecCCCCCccceeecCCEE--ECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCC
Confidence 3555567788886 55542111 011 1112 1677776554 4899999999999998776421 1
Q ss_pred --------------------------------------EE-EEEEcC-CceEEEEEcCC---------C----CeeEEEE
Q 011452 236 --------------------------------------VQ-EIKISP-GIMLLIFTKAS---------G----HVPLKIL 262 (485)
Q Consensus 236 --------------------------------------V~-~VafSp-g~~ll~sss~~---------~----D~tIklW 262 (485)
+| ..++.| .+++.+..+.. . ...|.-+
T Consensus 204 ~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Al 283 (599)
T 1w6s_A 204 DKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGR 283 (599)
T ss_dssp HHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEE
T ss_pred ccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEE
Confidence 11 245554 44444442211 0 1479999
Q ss_pred ecCCCeEEEEeecCCccee-------EEEEE-e-cCCC--EEEE-EeCCCcEEEEECCCCeeEEecccC-----------
Q 011452 263 SIEDGTVLKSFNHLLHRNK-------KVDFI-E-QFNE--KLLV-KQENENLQILDVRNFELTEVSRTE----------- 319 (485)
Q Consensus 263 di~tG~~L~tl~~~~~~~~-------~V~f~-~-~~~~--~lls-~s~D~tIkIWDv~tg~~~~~l~gh----------- 319 (485)
|.+||+.+-.++...+..+ .+.+- . .+++ .+++ ++.++.+.+.|.+||+++-...-.
T Consensus 284 d~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~ 363 (599)
T 1w6s_A 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL 363 (599)
T ss_dssp ETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT
T ss_pred eCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc
Confidence 9999999988874322221 12221 1 2342 4444 679999999999999987543210
Q ss_pred -CCce---------------------------EEEEEcCCCcEEEEE---------------------------------
Q 011452 320 -FMTP---------------------------SAFIFLYENQLFLTF--------------------------------- 338 (485)
Q Consensus 320 -~~~v---------------------------~avaFspdg~llaS~--------------------------------- 338 (485)
...+ ...+|+|+.++|...
T Consensus 364 ~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~ 443 (599)
T 1w6s_A 364 KTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPK 443 (599)
T ss_dssp TTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTT
T ss_pred CCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCc
Confidence 0010 235677777766442
Q ss_pred -------eCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 339 -------RNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 339 -------sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.++.|..||.. |+.+-+.+-.. . +++-.++..|.++..++. |+.++.+|..||++
T Consensus 444 ~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~-----~~~g~~~tagg~vf~gt~-----------dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 444 GDRQNYEGLGQIKAYNAITGDYKWEKMERF-A-----VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDL 506 (599)
T ss_dssp SBTTTTBCCEEEEEECTTTCCEEEEEEESS-C-----CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCE
T ss_pred CCcccCCCcCeEEEEECCCCCEEeEecCCC-C-----ccCcceEecCCEEEEECC-----------CCeEEEEECCCCCE
Confidence 13689999995 99887765221 1 111122335667777775 79999999999999
Q ss_pred EEEecCCC
Q 011452 411 LAKIRASN 418 (485)
Q Consensus 411 l~tl~gH~ 418 (485)
|.+++-..
T Consensus 507 lW~~~l~~ 514 (599)
T 1w6s_A 507 LWKFKIPS 514 (599)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99986543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.8e-07 Score=91.19 Aligned_cols=205 Identities=13% Similarity=0.130 Sum_probs=138.2
Q ss_pred CeEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEEe-C
Q 011452 225 YTMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVKQ-E 298 (485)
Q Consensus 225 g~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~s-~ 298 (485)
++.+.+++ + ...+.+.|+ ++.|..+.+..+...|+..|++||+.++++.-. ...+ .+++ ++++|.... .
T Consensus 31 ~~vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~---~g~~ly~ltw~ 105 (262)
T 3nol_A 31 YQIVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISD---WKDKIVGLTWK 105 (262)
T ss_dssp EEEEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEE---ETTEEEEEESS
T ss_pred eEEEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEE---eCCEEEEEEee
Confidence 35566665 2 358999999 557777766555579999999999999998732 3333 3554 367777764 7
Q ss_pred CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
++.+-++|.++.+.+.++.-.. .-+.+ ++|++.|..+. +++|.++|.+ .+.+.+++--....+-..+|.+.+. |
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~~-eG~gl--t~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYDG-EGWGL--THNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECSS-CCCCE--EECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CCEEEEEECccCcEEEEEECCC-CceEE--ecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 8999999999999998875322 22344 46777666665 7889999996 8888876542211111125677776 8
Q ss_pred CCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhccc
Q 011452 377 QDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEAL 456 (485)
Q Consensus 377 G~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 456 (485)
|++.|..-. +++|-+-|..||+.+.+|.-..-. ..+.. .....
T Consensus 182 G~lyan~w~-----------~~~I~vIDp~tG~V~~~Id~~~L~---~~~~~-----------------------~~~~~ 224 (262)
T 3nol_A 182 GEIFANVWQ-----------TNKIVRIDPETGKVTGIIDLNGIL---AEAGP-----------------------LPSPI 224 (262)
T ss_dssp TEEEEEETT-----------SSEEEEECTTTCBEEEEEECTTGG---GGSCS-----------------------CCSSC
T ss_pred CEEEEEEcc-----------CCeEEEEECCCCcEEEEEECCcCc---ccccc-----------------------ccCcC
Confidence 876665433 579999999999999999764200 00000 00001
Q ss_pred CCeEEEEEcCCCCEEEEec
Q 011452 457 EDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 457 ~~V~sl~fspDg~~LaSgs 475 (485)
.--..+||+|+++.|+-.+
T Consensus 225 ~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 225 DVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCEEEEEEETTTTEEEEEE
T ss_pred CceEEEEEcCCCCEEEEEC
Confidence 2567899999998877665
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.88 E-value=7.4e-08 Score=105.04 Aligned_cols=195 Identities=12% Similarity=0.006 Sum_probs=138.0
Q ss_pred CCeEEEEe-eCCCcEEEeecCCCeEEE--EEc-CCcEEEEEE-c-CCceEEEEEc----------------CCCCeeEEE
Q 011452 204 NGKVLTYS-AQDSIYKVFDLKNYTMLY--SIS-DKNVQEIKI-S-PGIMLLIFTK----------------ASGHVPLKI 261 (485)
Q Consensus 204 nG~~Las~-s~D~tiKlWdl~~g~~l~--tl~-~~~V~~Vaf-S-pg~~ll~sss----------------~~~D~tIkl 261 (485)
||++|--. ..+..|-+-|+++.++.. ++. +.....++| + |++..+..+. ...+.++.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 56665444 456679999999999887 554 467889998 5 7555554442 133479999
Q ss_pred EecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCC--------------------------------------cEE
Q 011452 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--------------------------------------NLQ 303 (485)
Q Consensus 262 Wdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~--------------------------------------tIk 303 (485)
.|.++.+.+.++.-- +.-.-++++ +++..+.+++++. .|.
T Consensus 180 ID~~t~~v~~qI~Vg-g~pd~~~~s-pdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 180 VDADKWEVAWQVLVS-GNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EETTTTEEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EECCCCeEEEEEEeC-CCccceEEC-CCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 999999999988721 122356664 6777777776442 589
Q ss_pred EEECCC--Cee-EEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-Cc------------EEEEeecCCCCCCC
Q 011452 304 ILDVRN--FEL-TEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-GE------------LVTSFEDHLLWHPD 365 (485)
Q Consensus 304 IWDv~t--g~~-~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~-G~------------ll~tl~gH~~~~~~ 365 (485)
+.|.++ ++. +..+.- ...+..+.|+|||++++.+. +.+|.++|++ .+ .+...+--..
T Consensus 258 VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~g---- 332 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLG---- 332 (595)
T ss_dssp EEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSC----
T ss_pred EEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCC----
Confidence 999998 544 333321 13567799999999887776 9999999996 32 3444432222
Q ss_pred CCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC----------CeEEEEecCCC
Q 011452 366 CNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT----------GKCLAKIRASN 418 (485)
Q Consensus 366 ~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T----------Gk~l~tl~gH~ 418 (485)
-+.++|+||| .+-+... -|++|-.||+.+ .+.+.++.-|.
T Consensus 333 --P~h~aF~~dG-~aY~t~~----------ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~y 382 (595)
T 1fwx_A 333 --PLHTAFDGRG-NAYTSLF----------LDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY 382 (595)
T ss_dssp --EEEEEECTTS-EEEEEET----------TTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS
T ss_pred --cceEEECCCC-eEEEEEe----------cCCcEEEEEhhHhhhhhcccccceeEEEeeccc
Confidence 5789999999 6655554 379999999988 67888988775
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.3e-05 Score=86.17 Aligned_cols=314 Identities=14% Similarity=0.069 Sum_probs=191.5
Q ss_pred ccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEee-------------cCCcccEEEEEEeeCCCEEEEEEeecCC
Q 011452 95 RSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLN-------------VTADEVIRSLFYNKNNDSLITVSVYASD 160 (485)
Q Consensus 95 ~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~-------------g~~~~~i~sv~~spdg~~Las~S~d~~~ 160 (485)
...|.+|... ...|..++..+-+..++..+++...... +-+...|++|+..++|...+. +.
T Consensus 257 ~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lWig-t~---- 331 (781)
T 3v9f_A 257 SSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIWIG-TW---- 331 (781)
T ss_dssp CCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEEEE-EB----
T ss_pred CceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEEEE-ec----
Confidence 4568899887 5567777774556677877665432211 113457999999999987654 21
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeee---------ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE--
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFES---------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-- 229 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~---------~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~-- 229 (485)
+ .-+..++...+.+ ..+.. .....+.++..+ .+|.+.+ |..++-+.++|..+++...
T Consensus 332 ~------~Gl~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~ 399 (781)
T 3v9f_A 332 G------GGINFISNAPPTF----HTWSYSPTQMNESSLSNKVVSSVCDD-GQGKLWI-GTDGGGINVFENGKRVAIYNK 399 (781)
T ss_dssp S------SCEEEECSSCCSC----EEEC----CCCSSCCSSSCEEEEEEC-TTSCEEE-EEBSSCEEEEETTEEEEECC-
T ss_pred C------CeEEEeCCCCCcc----eeeccCccccccCCCCCcceEEEEEc-CCCCEEE-EeCCCcEEEEECCCCeEEEcc
Confidence 1 1333444333332 11110 012345677776 6787765 4445557788877655332
Q ss_pred ---EEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec---CCcceeEEEEEecCCCEEEEEeCCCcEE
Q 011452 230 ---SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH---LLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (485)
Q Consensus 230 ---tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~---~~~~~~~V~f~~~~~~~lls~s~D~tIk 303 (485)
.+....|.++...+++.+.++.. ++-|..+|.++|+.. .+.. ....+.++.. ..++.|.++.. +-|.
T Consensus 400 ~~~~~~~~~v~~i~~d~~g~lWigt~---~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~--d~~g~lwigt~-~Gl~ 472 (781)
T 3v9f_A 400 ENRELLSNSVLCSLKDSEGNLWFGTY---LGNISYYNTRLKKFQ-IIELEKNELLDVRVFYE--DKNKKIWIGTH-AGVF 472 (781)
T ss_dssp ----CCCSBEEEEEECTTSCEEEEET---TEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEE--CTTSEEEEEET-TEEE
T ss_pred CCCCCCCcceEEEEECCCCCEEEEec---cCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEE--CCCCCEEEEEC-CceE
Confidence 23346899999987666666532 257888998887653 3321 1234555553 23567777766 5688
Q ss_pred EEECCCCeeEEecccC-----CCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCC
Q 011452 304 ILDVRNFELTEVSRTE-----FMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQD 378 (485)
Q Consensus 304 IWDv~tg~~~~~l~gh-----~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~ 378 (485)
++|..+++........ ...|.+++..++|++.+...++-+-.+|.+++.+..+...... +...|.+|+..++|.
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l-~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 473 VIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGF-CSNTINQIYRSSKGQ 551 (781)
T ss_dssp EEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTC-SCSCEEEEEECTTSC
T ss_pred EEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCC-CCCeeEEEEECCCCC
Confidence 9999988765443222 4679999999999999877733466788875555555432111 223489999999999
Q ss_pred EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCC
Q 011452 379 LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALED 458 (485)
Q Consensus 379 ~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 458 (485)
+.++.. .|-|..+|..+++. ..+...++.+ . ..
T Consensus 552 lWi~T~------------~Glv~~~d~~~~~~-~~~~~~~gl~------------------------~----------~~ 584 (781)
T 3v9f_A 552 MWLATG------------EGLVCFPSARNFDY-QVFQRKEGLP------------------------N----------TH 584 (781)
T ss_dssp EEEEET------------TEEEEESCTTTCCC-EEECGGGTCS------------------------C----------CC
T ss_pred EEEEEC------------CCceEEECCCCCcE-EEccccCCCC------------------------C----------ce
Confidence 888753 36558899887763 3343222100 0 25
Q ss_pred eEEEEEcCCCCEEEEecCCCcEE
Q 011452 459 ITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 459 V~sl~fspDg~~LaSgs~DgtVk 481 (485)
|.+++.+++|+..+++ .+|.++
T Consensus 585 i~~i~~d~~g~lW~~t-~~Gl~~ 606 (781)
T 3v9f_A 585 IRAISEDKNGNIWAST-NTGISC 606 (781)
T ss_dssp CCEEEECSSSCEEEEC-SSCEEE
T ss_pred EEEEEECCCCCEEEEc-CCceEE
Confidence 7788888888877665 445443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.85 E-value=2.8e-07 Score=91.15 Aligned_cols=179 Identities=13% Similarity=0.105 Sum_probs=132.3
Q ss_pred EEEEeCCCCeEEEEeeCCC--cEEEeecCCCeEEEEEc-CCcE--EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSIS-DKNV--QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~--tiKlWdl~~g~~l~tl~-~~~V--~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
.++|+ +|.+..|.+.++ .|++.|+++|+.+.++. +... ..|++..+ .+....- .++.+-++|.+|++++.
T Consensus 47 GL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~-~ly~ltw--~~~~v~v~D~~t~~~~~ 121 (262)
T 3nol_A 47 GFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD-KIVGLTW--KNGLGFVWNIRNLRQVR 121 (262)
T ss_dssp EEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT-EEEEEES--SSSEEEEEETTTCCEEE
T ss_pred eEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC-EEEEEEe--eCCEEEEEECccCcEEE
Confidence 57897 688899988876 99999999999988875 3333 34666544 4444433 34799999999999999
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc----CC-CceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT----EF-MTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g----h~-~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
+++.- ..-+.++ ++++.|.++..+.+|.++|.+|.+.+..+.- +. ..++.+.+. +|+++|... +.+|.+
T Consensus 122 ti~~~-~eG~glt---~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v 196 (262)
T 3nol_A 122 SFNYD-GEGWGLT---HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR 196 (262)
T ss_dssp EEECS-SCCCCEE---ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred EEECC-CCceEEe---cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence 99842 2224555 4577888876688999999999887766432 22 345666776 899998887 889999
Q ss_pred EeCC-CcEEEEeecCCCC-------CCCCCeeEEEECCCCCEEEEEec
Q 011452 346 WNFR-GELVTSFEDHLLW-------HPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 346 Wd~~-G~ll~tl~gH~~~-------~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-|.+ |+.+.+++-..+. ......|.||++|+++.|...++
T Consensus 197 IDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 197 IDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 9995 9999988754221 11234699999999998888775
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.82 E-value=2e-06 Score=84.13 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=121.0
Q ss_pred CCeEEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCccee--EEEEEecCCCEEEEE-e
Q 011452 224 NYTMLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK--KVDFIEQFNEKLLVK-Q 297 (485)
Q Consensus 224 ~g~~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~--~V~f~~~~~~~lls~-s 297 (485)
+++.+.+++ ...++.+.|+++ .|..+....+...|+..|+++|+.+++..-. ...+ .+++ ++++|... -
T Consensus 8 ~~~v~~~~phd~~~ftqGL~~~~~-~LyestG~~g~S~v~~vD~~tgkv~~~~~l~-~~~fgeGi~~---~~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRYPHDTTAFTEGLFYLRG-HLYESTGETGRSSVRKVDLETGRILQRAEVP-PPYFGAGIVA---WRDRLIQLTW 82 (243)
T ss_dssp CEEEEEEEECCTTCCEEEEEEETT-EEEEEECCTTSCEEEEEETTTCCEEEEEECC-TTCCEEEEEE---ETTEEEEEES
T ss_pred ceEEEEEcCCCCccccccEEEECC-EEEEECCCCCCceEEEEECCCCCEEEEEeCC-CCcceeEEEE---eCCEEEEEEe
Confidence 345566664 247999999984 5656655544579999999999999988632 2333 4454 36777665 4
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.++.+.++|.++.+.+.++... ..-+.+ .+|++.|..+. +++|.++|.+ .+.+.+++-.....+-..+|.+.+.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~-~~Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~- 158 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYP-GEGWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV- 158 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECS-SCCCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred eCCEEEEEECCcCcEEEEEeCC-CCceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence 8999999999999999988543 334555 46666555555 8899999995 8888877643211111125666654
Q ss_pred CCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 376 DQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 376 DG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
+|++.|-.-. +..|-+-|..||+.+.+|.-.
T Consensus 159 ~G~lyanvw~-----------s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 159 NGELLANVWL-----------TSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp TTEEEEEETT-----------TTEEEEECTTTCBEEEEEECG
T ss_pred CCEEEEEECC-----------CCeEEEEECCCCCEEEEEECC
Confidence 7776654433 578999999999999999754
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=2.5e-06 Score=83.32 Aligned_cols=243 Identities=15% Similarity=0.068 Sum_probs=151.8
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE-EEEc--------------------CCcEEEEEEcC-CceEEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS--------------------DKNVQEIKISP-GIMLLI 249 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l-~tl~--------------------~~~V~~VafSp-g~~ll~ 249 (485)
+..|..++++ ++|.+|..+..++.|..||..+++.. +... ......|++.| ++.|.+
T Consensus 18 ~~~p~~i~~d-~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v 96 (322)
T 2fp8_A 18 SYAPNSFTFD-STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI 96 (322)
T ss_dssp SSCCCCEECC-TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred cCCceEEEEc-CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence 4567789997 68986667778899999998876532 2211 13578999997 788877
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecC-----CcceeEEEEEec-CCCEEEEEeC-----------------CCcEEEEE
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHL-----LHRNKKVDFIEQ-FNEKLLVKQE-----------------NENLQILD 306 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~-----~~~~~~V~f~~~-~~~~lls~s~-----------------D~tIkIWD 306 (485)
+... ..|..+|..+|+ ++.+... ......|++. + ++...++-.. ++.|..+|
T Consensus 97 ~d~~---~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d-~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 97 VDCY---YHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVD-QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EETT---TEEEEECTTCEE-CEEEESEETTEECSCEEEEEEC-TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EECC---CCEEEEeCCCCE-EEEecccCCCCcccccceEEEe-cCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 7443 348888987664 3333211 1234567764 5 4544443222 36788899
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCCCc---EEEEeecCCCCCCCCCeeEEEECCCCCEEE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE---LVTSFEDHLLWHPDCNTNNIYITSDQDLII 381 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~G~---ll~tl~gH~~~~~~~~v~svafSpDG~~La 381 (485)
..+++..... .....++.++|+|||+ ++++-. ++.|..++++++ ....+.. . . . -..|++.++|.+.+
T Consensus 172 ~~~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~-~---g-P~gi~~d~~G~l~v 244 (322)
T 2fp8_A 172 PSTKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-I-P---N-PGNIKRNADGHFWV 244 (322)
T ss_dssp TTTTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-C-S---S-EEEEEECTTSCEEE
T ss_pred CCCCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-C-C---C-CCCeEECCCCCEEE
Confidence 9888764433 2335678899999998 555656 889999998742 1222321 1 1 1 46899999999888
Q ss_pred EEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEE
Q 011452 382 SYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITA 461 (485)
Q Consensus 382 S~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~s 461 (485)
+...... .....+..+.|..+|. .|+.+..+....+. .+..+++
T Consensus 245 a~~~~~~-~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~----------------------------------~~~~~~~ 288 (322)
T 2fp8_A 245 SSSEELD-GNMHGRVDPKGIKFDE-FGNILEVIPLPPPF----------------------------------AGEHFEQ 288 (322)
T ss_dssp EEEEETT-SSTTSCEEEEEEEECT-TSCEEEEEECCTTT----------------------------------TTSCCCE
T ss_pred EecCccc-ccccCCCccEEEEECC-CCCEEEEEECCCCC----------------------------------ccccceE
Confidence 7642000 0000011256888885 58988888654310 0125677
Q ss_pred EEEcCCCCEEEEecCCCcEEEcc
Q 011452 462 LFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 462 l~fspDg~~LaSgs~DgtVklWd 484 (485)
+++ .+|+..++....+.|..++
T Consensus 289 ~~~-~~g~L~v~~~~~~~i~~~~ 310 (322)
T 2fp8_A 289 IQE-HDGLLYIGTLFHGSVGILV 310 (322)
T ss_dssp EEE-ETTEEEEECSSCSEEEEEE
T ss_pred EEE-eCCEEEEeecCCCceEEEe
Confidence 777 4777777776777777665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.75 E-value=9.6e-06 Score=79.05 Aligned_cols=231 Identities=12% Similarity=0.050 Sum_probs=143.4
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
.+.+.++.. ......++++|+|+.+++ . ... +.+..++ ..|+.. ..+.. -..|..++|+ ++
T Consensus 22 ~~~~~~~p~--~~~pegia~~~~g~lyv~-d--~~~-------~~I~~~d-~~g~~~---~~~~~--~~~p~gia~~-~d 82 (306)
T 2p4o_A 22 AKIITSFPV--NTFLENLASAPDGTIFVT-N--HEV-------GEIVSIT-PDGNQQ---IHATV--EGKVSGLAFT-SN 82 (306)
T ss_dssp EEEEEEECT--TCCEEEEEECTTSCEEEE-E--TTT-------TEEEEEC-TTCCEE---EEEEC--SSEEEEEEEC-TT
T ss_pred ceEeEeCCC--CCCcceEEECCCCCEEEE-e--CCC-------CeEEEEC-CCCceE---EEEeC--CCCceeEEEc-CC
Confidence 444555533 245789999999986554 1 112 3565566 345431 22332 2457789997 78
Q ss_pred CeEEEEeeCCC--cEEEeecCCCeEEE--EEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE-EEEeec---
Q 011452 205 GKVLTYSAQDS--IYKVFDLKNYTMLY--SISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV-LKSFNH--- 275 (485)
Q Consensus 205 G~~Las~s~D~--tiKlWdl~~g~~l~--tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~-L~tl~~--- 275 (485)
|+++++..... .|-.+|..+|+... .+.. ..-..+++.++++++++... .+.|..+|..+|+. +....+
T Consensus 83 G~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~--~g~i~~~d~~~~~~~v~~~~~~~~ 160 (306)
T 2p4o_A 83 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY--RGAIWLIDVVQPSGSIWLEHPMLA 160 (306)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT--TTEEEEEETTTTEEEEEEECGGGS
T ss_pred CcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECC--CCeEEEEeCCCCcEeEEEECCccc
Confidence 99877665433 35556777887533 2222 34466777788887776432 36788888776532 211111
Q ss_pred ------CCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCC-Cee--EEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 276 ------LLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN-FEL--TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 276 ------~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t-g~~--~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
....-..| .++++.|.++ ...+.|..+|+.. ++. .+++. ....+..+++.++|+++++.. .+.|.
T Consensus 161 ~~~~~~~~~~pngi---s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~ 236 (306)
T 2p4o_A 161 RSNSESVFPAANGL---KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVV 236 (306)
T ss_dssp CSSTTCCSCSEEEE---EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred cccccCCCCcCCCc---CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEE
Confidence 11122344 3667778776 5789999999875 432 22221 124577899999999998888 88999
Q ss_pred EEeCCCcEEE--EeecCCCCCCCCCeeEEEEC---CCCCEEEEEec
Q 011452 345 VWNFRGELVT--SFEDHLLWHPDCNTNNIYIT---SDQDLIISYCK 385 (485)
Q Consensus 345 lWd~~G~ll~--tl~gH~~~~~~~~v~svafS---pDG~~LaS~s~ 385 (485)
++|.+|++.. .+.....+ ..+++|. ||++.|...+.
T Consensus 237 ~~~~~G~~~~~~~~~~~~~~-----p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 237 RIAPDRSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EECTTCCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEEEC
T ss_pred EECCCCCEEEEeecccccCC-----ceEEEEecccCCCCEEEEECC
Confidence 9999998744 33322223 7899999 89877766553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.72 E-value=1.3e-06 Score=86.74 Aligned_cols=179 Identities=13% Similarity=0.088 Sum_probs=130.9
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCc--EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~--V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.++|+ ++.+..+.+.++.|++.|+++|+.+.++.+.. -..|++..+ .+....- .++.+.++|.+|+++++++.
T Consensus 59 GL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~-~Ly~ltw--~~~~v~V~D~~Tl~~~~ti~ 133 (268)
T 3nok_A 59 GLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGE-RLYQLTW--TEGLLFTWSGMPPQRERTTR 133 (268)
T ss_dssp EEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSS-CEEEEES--SSCEEEEEETTTTEEEEEEE
T ss_pred eEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCC-EEEEEEc--cCCEEEEEECCcCcEEEEEe
Confidence 68897 58999999999999999999999766653333 344777655 4444333 34799999999999999998
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc--C---CCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT--E---FMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g--h---~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
.- ..-+.++ ++++.|.++..+++|.++|.+|.+.+..+.- + ...++.+.+. +|+++|... +.+|.+=|.
T Consensus 134 ~~-~eGwGLt---~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp 208 (268)
T 3nok_A 134 YS-GEGWGLC---YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDP 208 (268)
T ss_dssp CS-SCCCCEE---EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECT
T ss_pred CC-CceeEEe---cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeC
Confidence 42 3335565 4578888887799999999999988776532 1 1244666666 889998887 889999999
Q ss_pred C-CcEEEEeecCCC--------CCCCCCeeEEEECCCCCEEEEEec
Q 011452 349 R-GELVTSFEDHLL--------WHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 349 ~-G~ll~tl~gH~~--------~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+ |+.+.+++-..+ .......|.||++|+++.|...++
T Consensus 209 ~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 209 ATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 5 999988764311 112234799999998777766554
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=7.2e-06 Score=80.08 Aligned_cols=197 Identities=10% Similarity=-0.009 Sum_probs=127.4
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEE-EcC---CcEEEEEEcC-CceEEEEEcC------------
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYS-ISD---KNVQEIKISP-GIMLLIFTKA------------ 253 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~t-l~~---~~V~~VafSp-g~~ll~sss~------------ 253 (485)
..|..++|++.+|.+++.... +-+..+|.++++. +.. ..+ .....|++.| ++.+.++...
T Consensus 80 ~~p~gi~~~~~~g~l~v~d~~-~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~ 158 (322)
T 2fp8_A 80 GRTYDISYNLQNNQLYIVDCY-YHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158 (322)
T ss_dssp CCEEEEEEETTTTEEEEEETT-TEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHH
T ss_pred CCCceEEEcCCCCcEEEEECC-CCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceeh
Confidence 356789998337887776544 4478888876642 211 111 3578999999 8887776543
Q ss_pred ---CCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCe--eEEecccCCCceEEEE
Q 011452 254 ---SGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFE--LTEVSRTEFMTPSAFI 327 (485)
Q Consensus 254 ---~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~--~~~~l~gh~~~v~ava 327 (485)
..++.|..+|..+|+......+ ...-..|+|. +++..|.++ ..++.|..+|+.+.. ..+.+..... +..++
T Consensus 159 ~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~-~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~ 235 (322)
T 2fp8_A 159 DTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVS-ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIK 235 (322)
T ss_dssp HHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEEC-TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEE
T ss_pred cccCCCceEEEEeCCCCEEEEeccC-CccCcceEEC-CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeE
Confidence 1236788899888875433332 2334578885 667777776 577999999988521 1122211123 88999
Q ss_pred EcCCCcEEEEEeC-----------CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 328 FLYENQLFLTFRN-----------RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 328 Fspdg~llaS~sD-----------~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
+.++|++.++... +.|..+|.+|+.+..+........ ..+.++++ .+|++.++...
T Consensus 236 ~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~~-~~~~~~~~-~~g~L~v~~~~----------- 302 (322)
T 2fp8_A 236 RNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFAG-EHFEQIQE-HDGLLYIGTLF----------- 302 (322)
T ss_dssp ECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTTT-SCCCEEEE-ETTEEEEECSS-----------
T ss_pred ECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCcc-ccceEEEE-eCCEEEEeecC-----------
Confidence 9999999888653 567788888999988875432100 11567777 57777776543
Q ss_pred CCeEEEEeCC
Q 011452 397 AGSINISNIL 406 (485)
Q Consensus 397 DgtIklWdl~ 406 (485)
.+.|..+++.
T Consensus 303 ~~~i~~~~~~ 312 (322)
T 2fp8_A 303 HGSVGILVYD 312 (322)
T ss_dssp CSEEEEEEC-
T ss_pred CCceEEEecc
Confidence 5778888864
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.5e-06 Score=82.47 Aligned_cols=179 Identities=12% Similarity=0.077 Sum_probs=129.5
Q ss_pred EEEEeCCCCeEEEEeeCC--CcEEEeecCCCeEEEEEc-CCcE--EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 197 FVEFDDVNGKVLTYSAQD--SIYKVFDLKNYTMLYSIS-DKNV--QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D--~tiKlWdl~~g~~l~tl~-~~~V--~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
.++|+ ++.+..|.+.+ +.|++.|+++|+.+.++. .... ..+++.. +.+....- .++.+-++|.+|++++.
T Consensus 25 GL~~~--~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw--~~~~v~v~D~~tl~~~~ 99 (243)
T 3mbr_X 25 GLFYL--RGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTW--RNHEGFVYDLATLTPRA 99 (243)
T ss_dssp EEEEE--TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEES--SSSEEEEEETTTTEEEE
T ss_pred cEEEE--CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEe--eCCEEEEEECCcCcEEE
Confidence 58897 38888888875 599999999999988875 3333 3455554 44444433 34799999999999999
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCC-----CceEEEEEcCCCcEEEEEe-CCcEEE
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEF-----MTPSAFIFLYENQLFLTFR-NRTVAV 345 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~-----~~v~avaFspdg~llaS~s-D~TIkl 345 (485)
+++.- ..-+.++ ++++.|.++..+++|.++|.+|.+.+..+.-.. ..++.+.+. +|+++|... +..|.+
T Consensus 100 ti~~~-~~Gwglt---~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~v 174 (243)
T 3mbr_X 100 RFRYP-GEGWALT---SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIAR 174 (243)
T ss_dssp EEECS-SCCCEEE---ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred EEeCC-CCceEEe---eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEE
Confidence 99842 2234554 467888888678999999999998877653211 234555544 899998887 889999
Q ss_pred EeCC-CcEEEEeecCCCC--------CCCCCeeEEEECCCCCEEEEEec
Q 011452 346 WNFR-GELVTSFEDHLLW--------HPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 346 Wd~~-G~ll~tl~gH~~~--------~~~~~v~svafSpDG~~LaS~s~ 385 (485)
-|.+ |+.+.++.-..+. ......|.||++|+++.|...++
T Consensus 175 IDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 175 IDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp ECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred EECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 9995 9999887733211 12234799999999888877764
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-06 Score=85.77 Aligned_cols=168 Identities=13% Similarity=-0.000 Sum_probs=117.8
Q ss_pred eEEEEEc-C--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeE--EEEEecCCCEEEEE-eCC
Q 011452 226 TMLYSIS-D--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK--VDFIEQFNEKLLVK-QEN 299 (485)
Q Consensus 226 ~~l~tl~-~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~--V~f~~~~~~~lls~-s~D 299 (485)
+.+.+++ + ...+.+.|++ +.|..+.+. ++.|+..|++||+.++++ .....+. +++ ++++|... -.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~-~~Ly~stG~--~g~v~~iD~~Tgkv~~~~--l~~~~FgeGit~---~g~~Ly~ltw~~ 115 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ-GHFFESTGH--QGTLRQLSLESAQPVWME--RLGNIFAEGLAS---DGERLYQLTWTE 115 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET-TEEEEEETT--TTEEEECCSSCSSCSEEE--ECTTCCEEEEEE---CSSCEEEEESSS
T ss_pred EEEEEEcCCCccccceEEEEC-CEEEEEcCC--CCEEEEEECCCCcEEeEE--CCCCcceeEEEE---eCCEEEEEEccC
Confidence 3445554 2 4689999985 466555443 356999999999999987 2234443 554 46666665 489
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
+.+.++|.++++.+.++.-. ..-+.+ .+||+.|..+. +++|.++|.+ .+.+.+++--....+-..+|.+.+. ||
T Consensus 116 ~~v~V~D~~Tl~~~~ti~~~-~eGwGL--t~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 116 GLLFTWSGMPPQRERTTRYS-GEGWGL--CYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCCCCE--EEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred CEEEEEECCcCcEEEEEeCC-CceeEE--ecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 99999999999999887542 233444 46777776666 8899999996 8888877642211111126777876 88
Q ss_pred CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 378 DLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 378 ~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++.|..-. +++|-+-|..||+.+++|.-
T Consensus 192 ~lyanvw~-----------s~~I~vIDp~TG~V~~~Idl 219 (268)
T 3nok_A 192 VIYANIWH-----------SSDVLEIDPATGTVVGVIDA 219 (268)
T ss_dssp EEEEEETT-----------CSEEEEECTTTCBEEEEEEC
T ss_pred EEEEEECC-----------CCeEEEEeCCCCcEEEEEEC
Confidence 76665433 57999999999999999965
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-06 Score=90.30 Aligned_cols=264 Identities=12% Similarity=0.040 Sum_probs=153.9
Q ss_pred EEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEee--CCCEEEEEEeecC--CCCcccceeEEEEeEecc
Q 011452 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK--NNDSLITVSVYAS--DNFSSLRCRSTRIEYIRR 177 (485)
Q Consensus 102 ~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~--~d~stL~~~t~~lw~i~~ 177 (485)
++.++.|+.++.|+.+..+|.+||+.+-.........-..+.-+| .+..|+.++..+. .+ ..+...|..+
T Consensus 112 ~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~------g~v~a~D~~t 185 (571)
T 2ad6_A 112 AYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVR------GAVNAFDLKT 185 (571)
T ss_dssp EEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCC------CEEEEEETTT
T ss_pred EEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCC------CEEEEEECCC
Confidence 456889999999999999999999988665432100000111122 1345554432110 02 4677778778
Q ss_pred CCcCcccceeeeccc---------------------------cCc------------eEEEEeCCCCeEEEEeeC-----
Q 011452 178 GKPDAGFALFESESL---------------------------KWP------------GFVEFDDVNGKVLTYSAQ----- 213 (485)
Q Consensus 178 G~~~~~~~lf~~~~~---------------------------~~~------------~~V~Fs~pnG~~Las~s~----- 213 (485)
|++ +|+.... .|+ ..+++++.+|.+.+..+.
T Consensus 186 G~~-----~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~ 260 (571)
T 2ad6_A 186 GEL-----KWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWN 260 (571)
T ss_dssp CCE-----EEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSC
T ss_pred CcE-----EEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCcccc
Confidence 876 3332110 010 136787545665554331
Q ss_pred ------C----CcEEEeecCCCeEEEEEcC--C------cEEEEEE---cCCc---eEEEEEcCCCCeeEEEEecCCCeE
Q 011452 214 ------D----SIYKVFDLKNYTMLYSISD--K------NVQEIKI---SPGI---MLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 214 ------D----~tiKlWdl~~g~~l~tl~~--~------~V~~Vaf---Spg~---~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
| ++|..+|+++|+.+..+.. + .+.+..+ .+++ .+++.. +.++.+.++|.+||++
T Consensus 261 ~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~--~~~G~l~~lD~~tG~~ 338 (571)
T 2ad6_A 261 ETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI--DRNGILYTLNRENGNL 338 (571)
T ss_dssp GGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE--CTTSEEEEEETTTCCE
T ss_pred CCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEe--CCCcEEEEEECCCCCE
Confidence 2 3699999999998877641 1 1222222 2244 233333 3447999999999999
Q ss_pred EEEeecCC--c-----------ce--------------------------eEEEEEecCCCEEEEEe-------------
Q 011452 270 LKSFNHLL--H-----------RN--------------------------KKVDFIEQFNEKLLVKQ------------- 297 (485)
Q Consensus 270 L~tl~~~~--~-----------~~--------------------------~~V~f~~~~~~~lls~s------------- 297 (485)
+..++-.. . .+ ..++|. |+.+.+.+..
T Consensus 339 ~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d-p~~g~~yv~~~~~~~~~~~~~~~ 417 (571)
T 2ad6_A 339 IVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD-PESRTLYAGLNHICMDWEPFMLP 417 (571)
T ss_dssp EEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE-TTTTEEEEEEECEEEEEEECCCC
T ss_pred EeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC-CCCCEEEEEchhccccccccccc
Confidence 98775211 0 00 134554 4455655542
Q ss_pred ------------------------CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc
Q 011452 298 ------------------------ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE 351 (485)
Q Consensus 298 ------------------------~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ 351 (485)
.++.|..||+.+|+.+-...... .+.+..+...+.++..++ |++|..+|.+ |+
T Consensus 418 ~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 418 YRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred cccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 35799999999999876654322 233333333344455567 9999999995 99
Q ss_pred EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 352 LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 352 ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++.+++-..... -..+.+.+||+.++...
T Consensus 497 ~lw~~~~~~~~~----~~p~~~~~~G~~yv~~~ 525 (571)
T 2ad6_A 497 ELWNFKMPSGGI----GSPMTYSFKGKQYIGSM 525 (571)
T ss_dssp EEEEEECSSCCC----SCCEEEEETTEEEEEEE
T ss_pred EEEEEeCCCCcE----eeeEEEEECCEEEEEEE
Confidence 999887443211 22345568888766654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.63 E-value=9.1e-06 Score=90.01 Aligned_cols=244 Identities=10% Similarity=0.044 Sum_probs=142.9
Q ss_pred cEEEEEEe-eCCCEEEEEEee-cCCCCcccceeEEEEeEeccC-CcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 138 VIRSLFYN-KNNDSLITVSVY-ASDNFSSLRCRSTRIEYIRRG-KPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 138 ~i~sv~~s-pdg~~Las~S~d-~~~d~stL~~~t~~lw~i~~G-~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
.+.+..|| |||+.||.++.. |++. .++.++++..| +... ..+.. ....++|+ |||+.|++.+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~------~~l~v~dl~~g~~~l~--~~~~~----~~~~~~Ws-pDg~~l~y~~~d 241 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEV------YTIEFKRISDPSQTIA--DKVSG----TNGEIVWG-PDHTSLFYVTKD 241 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSC------EEEEEEETTCTTCCCC--CCEEE----ECSCCEEC-SSTTEEEEEEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCce------EEEEEEECCCCCEeCC--ccccC----ceeeEEEe-cCCCEEEEEEEC
Confidence 68899999 999999876653 3333 57889999888 6311 01111 12367898 799999998876
Q ss_pred -----CcEEEeecCCCe----EEEEEcC-CcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCC--eE-EEEee-cCCcc
Q 011452 215 -----SIYKVFDLKNYT----MLYSISD-KNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDG--TV-LKSFN-HLLHR 279 (485)
Q Consensus 215 -----~tiKlWdl~~g~----~l~tl~~-~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG--~~-L~tl~-~~~~~ 279 (485)
..|.++++.+++ +++.-.+ ....++.+||++. |++++.......|.++|+.++ +. ++.+. +....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~ 321 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGV 321 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTC
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCc
Confidence 357788887764 4444333 3567899998664 454443334577889999886 33 14443 33344
Q ss_pred eeEEEEEecCCCEEEEEe-CC--C--cEEEEECCCC-eeEE-ecccCCC--ceEEEEEcCCCcEEEEEe-CCcEEE--Ee
Q 011452 280 NKKVDFIEQFNEKLLVKQ-EN--E--NLQILDVRNF-ELTE-VSRTEFM--TPSAFIFLYENQLFLTFR-NRTVAV--WN 347 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s-~D--~--tIkIWDv~tg-~~~~-~l~gh~~--~v~avaFspdg~llaS~s-D~TIkl--Wd 347 (485)
.++++|. +++.|+..+ .| + .|-.+|+.++ +... .+ .|.. .+..+.+. ++.++++.. |+..+| +|
T Consensus 322 ~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 322 RYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp CEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEE
T ss_pred eEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEe
Confidence 4566653 377776654 33 3 4555577653 3333 23 3332 44555554 455666666 886555 45
Q ss_pred C-------C-CcEEEEee--cCCCCCCCCCeeEEEE------CCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 348 F-------R-GELVTSFE--DHLLWHPDCNTNNIYI------TSDQD-LIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 348 ~-------~-G~ll~tl~--gH~~~~~~~~v~svaf------SpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
+ . |+.++.+. +. ...+.| ++|++ ++++++. ...-.+|.+.|+.+|+.
T Consensus 398 l~~~~~~~~~g~~~~~l~l~~~--------~~~~~~~~~~~~~~~~~~l~~~~ss--------~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 398 ADSQDGVFKAGTGLREVVMEEP--------IFTVHLVESQMLEYEEPTFRMEYSS--------LATPNTWFDVSPQDHSR 461 (751)
T ss_dssp CCTTTSCCCTTTCCEECCCCCS--------SCEEEECGGGCCCTTCSCEEEEEEE--------TTEEEEEEEECTTTCCE
T ss_pred cccccccccCCccceEECCCCc--------eeEEEeccCcccCCCCCEEEEEEeC--------CCCCCEEEEEECCCCcE
Confidence 4 4 44134432 21 123345 45665 5556553 11225688888888863
Q ss_pred EEEec
Q 011452 411 LAKIR 415 (485)
Q Consensus 411 l~tl~ 415 (485)
..|.
T Consensus 462 -~~l~ 465 (751)
T 2xe4_A 462 -TAVK 465 (751)
T ss_dssp -EEEE
T ss_pred -EEEe
Confidence 3343
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.63 E-value=0.00036 Score=76.72 Aligned_cols=314 Identities=10% Similarity=0.025 Sum_probs=189.5
Q ss_pred cceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEeec------CCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNV------TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 96 s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~g------~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
..|.+|... +..|-.+..++-+..++.++++....... -....|++|+..++|..+|.. .+
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt-----~~------- 230 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGT-----SK------- 230 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEE-----TT-------
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEe-----CC-------
Confidence 458888876 56666677664566788776654432111 123569999999999987642 12
Q ss_pred EEEEeEeccCCcCcccceeeec-------cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE-----------
Q 011452 169 STRIEYIRRGKPDAGFALFESE-------SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS----------- 230 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~-------~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t----------- 230 (485)
-+.+++...+++. .+... ....+.++..+ .+|.+.+ |...+-+.++|..+++....
T Consensus 231 Gl~~~d~~~~~~~----~~~~~~~~~~~l~~~~i~~i~~d-~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~ 304 (781)
T 3v9f_A 231 GLALFNANTETFT----NFHNNPGNIHGALSSYIFSIKQL-KDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREG 304 (781)
T ss_dssp EEEEEETTTTEEE----C-----------CCCCEEEEEEC-TTSEEEE-EESSSCEEEEETTCC---------CEEECBC
T ss_pred cHheECCCCCcEE----EEEcCCCccccccCceEEEEEEC-CCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCC
Confidence 3445564444431 11110 12345577776 6888766 44435577889887664221
Q ss_pred -----EcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec----------CCcceeEEEEEecCCCEEEE
Q 011452 231 -----ISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH----------LLHRNKKVDFIEQFNEKLLV 295 (485)
Q Consensus 231 -----l~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~----------~~~~~~~V~f~~~~~~~lls 295 (485)
+....|.++...+++.+-++... +-|..++..++... .+.. ....+.++.. ..++.|-+
T Consensus 305 ~~~~~l~~~~v~~i~~D~~g~lWigt~~---~Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWi 378 (781)
T 3v9f_A 305 DNNYSLSNASARYIFQDSFNNIWIGTWG---GGINFISNAPPTFH-TWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWI 378 (781)
T ss_dssp SSTTSBSSSCEEEEEECSSCCEEEEEBS---SCEEEECSSCCSCE-EEC----CCCSSCCSSSCEEEEEE--CTTSCEEE
T ss_pred CCCCCCCCCeEEEEEEeCCCCEEEEecC---CeEEEeCCCCCcce-eeccCccccccCCCCCcceEEEEE--cCCCCEEE
Confidence 23457999999876666655322 46888887765532 2211 1133555553 23467888
Q ss_pred EeCCCcEEEEECCCCeeEEec---ccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEE
Q 011452 296 KQENENLQILDVRNFELTEVS---RTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIY 372 (485)
Q Consensus 296 ~s~D~tIkIWDv~tg~~~~~l---~gh~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~~~~~~~~v~sva 372 (485)
+.+++-|.++|..+++..... ......|.+++..++|++.+...++-|-.+|.+...++.+..... +...|.+|+
T Consensus 379 gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~--~~~~v~~i~ 456 (781)
T 3v9f_A 379 GTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKN--ELLDVRVFY 456 (781)
T ss_dssp EEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTT--CCCCEEEEE
T ss_pred EeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCC--CCCeEEEEE
Confidence 887788999999876554321 123467999999999998885546778889986333444432111 112389999
Q ss_pred ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccch
Q 011452 373 ITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTV 452 (485)
Q Consensus 373 fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (485)
..++|.+.+... +-|.++|..+++.......... .
T Consensus 457 ~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~--~------------------------------ 491 (781)
T 3v9f_A 457 EDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNS--Q------------------------------ 491 (781)
T ss_dssp ECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTS--S------------------------------
T ss_pred ECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccc--c------------------------------
Confidence 999999887642 4588899888765433221110 0
Q ss_pred hcccCCeEEEEEcCCCCEEEEecCCCcEE
Q 011452 453 AEALEDITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 453 ~~~l~~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
.....|.+++.+++|+..+....+|..+
T Consensus 492 -~~~~~i~~i~~d~~g~lWigt~~~Gl~~ 519 (781)
T 3v9f_A 492 -LLENFVRSIAQDSEGRFWIGTFGGGVGI 519 (781)
T ss_dssp -CSCSCEEEEEECTTCCEEEEESSSCEEE
T ss_pred -cccceeEEEEEcCCCCEEEEEcCCCEEE
Confidence 0002789999999999877665566544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.59 E-value=9.3e-06 Score=88.14 Aligned_cols=265 Identities=9% Similarity=-0.026 Sum_probs=152.2
Q ss_pred cCEEEEEeCCC-----------eEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 105 RDIVFALAQSG-----------VCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 105 ~~~ias~s~dg-----------tiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
+++++.|+.+. .+.+||..+++ .+..+...+.....++++.++|+.++.++. ++ ..+.
T Consensus 198 g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~---~~------~~v~ 268 (656)
T 1k3i_A 198 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN---DA------KKTS 268 (656)
T ss_dssp TEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS---ST------TCEE
T ss_pred CEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCC---CC------CceE
Confidence 77888876543 68899998877 334444434444556888999998887542 22 2678
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-CC-----CcEEEeecCCCeEEEE-------EcCCcEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-QD-----SIYKVFDLKNYTMLYS-------ISDKNVQE 238 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s-~D-----~tiKlWdl~~g~~l~t-------l~~~~V~~ 238 (485)
++|..+++......+ .. -.+-..+++- +||++++.|+ .+ .++.+||..+.+-... +.... ..
T Consensus 269 ~yd~~t~~W~~~~~~-~~--~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~ 343 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDM-QV--ARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQ 343 (656)
T ss_dssp EEEGGGTEEEECCCC-SS--CCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TT
T ss_pred EecCcCCceeECCCC-Cc--cccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cc
Confidence 888876654211010 00 1121244553 5899999998 44 6799999988774322 10000 00
Q ss_pred EEEcCCceE-EEEEcC------CCCeeEEEEecCCCeEEEEeecCCc---------ceeEEEEEecCCCEEEEEeCCC--
Q 011452 239 IKISPGIML-LIFTKA------SGHVPLKILSIEDGTVLKSFNHLLH---------RNKKVDFIEQFNEKLLVKQENE-- 300 (485)
Q Consensus 239 VafSpg~~l-l~sss~------~~D~tIklWdi~tG~~L~tl~~~~~---------~~~~V~f~~~~~~~lls~s~D~-- 300 (485)
.++..++.+ +..... .....+..||.++.+.......+.. .-..|.|...++..+++|+.++
T Consensus 344 ~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 344 GLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp GGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred ceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 011111111 221110 1125789999998876655443211 1234555333444445566432
Q ss_pred ---------cEEEEECCCCeeEEec--ccCCCce-EEEEEcCCCcEEEEEe-C-----------CcEEEEeCCCcEEEEe
Q 011452 301 ---------NLQILDVRNFELTEVS--RTEFMTP-SAFIFLYENQLFLTFR-N-----------RTVAVWNFRGELVTSF 356 (485)
Q Consensus 301 ---------tIkIWDv~tg~~~~~l--~gh~~~v-~avaFspdg~llaS~s-D-----------~TIklWd~~G~ll~tl 356 (485)
.|.+||..+.+..+.. .-+..+. -+.+..|||++++.++ + .++.+||.....-..+
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~ 503 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ 503 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeec
Confidence 7889999988776654 2222222 2345789999999997 5 5789999963333333
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
..- ..+........+.|||++++.|+.
T Consensus 504 ~~~--~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 504 NPN--SIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCC--SSCCCTTEEEEECTTSCEEEEECC
T ss_pred CCC--CCccccccHhhcCCCcEEEecCCC
Confidence 211 112222345667899999999984
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.53 E-value=0.00011 Score=76.17 Aligned_cols=236 Identities=13% Similarity=0.103 Sum_probs=145.7
Q ss_pred EEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe
Q 011452 99 IEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (485)
Q Consensus 99 ~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i 175 (485)
..|++. +..|..+...+.|+.++.++++ +.++.. ....-+.|+|+|+|+.|..+...+. ..+..-+|..
T Consensus 140 ~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~-v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~------~~~~~v~~~~ 211 (430)
T 3tc9_A 140 VWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY-VSTVYS-GLSKVRTICWTHEADSMIITNDQNN------NDRPNNYILT 211 (430)
T ss_dssp CEEEEETTEEEEEEEEEBTEEEEEEETTTTE-EEEEEC-CCSCEEEEEECTTSSEEEEEECCSC------TTSEEEEEEE
T ss_pred CEEEECCCCCCeEEEEeCCCcEEEEECCCCE-EEEEec-CCCCcceEEEeCCCCEEEEEeCCCC------cccceEEEEe
Confidence 355555 3566666666889999988544 445544 3445899999999996655432111 1122234444
Q ss_pred ccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEcC-CcEEEEEEcCCce-EEEEE
Q 011452 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISD-KNVQEIKISPGIM-LLIFT 251 (485)
Q Consensus 176 ~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~~-~~V~~VafSpg~~-ll~ss 251 (485)
+.|.+... ..+. .+.+|..+++++.+|.++++...++.|..+|..++.. +..+.. ..-..|+|+|++. +.++.
T Consensus 212 ~~g~~~~~-~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 RESGFKVI-TELT--KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp GGGTSCSE-EEEE--ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred CCCceeee-eeec--cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 66765321 1222 3578889999843899888887888999999987765 223322 3567899998665 65654
Q ss_pred cCCCCeeEEEEecC--CCeE--EEEeecCC---------------ccee-EEEEEec------CCCEEEEE-eCCCcEEE
Q 011452 252 KASGHVPLKILSIE--DGTV--LKSFNHLL---------------HRNK-KVDFIEQ------FNEKLLVK-QENENLQI 304 (485)
Q Consensus 252 s~~~D~tIklWdi~--tG~~--L~tl~~~~---------------~~~~-~V~f~~~------~~~~lls~-s~D~tIkI 304 (485)
.. ...|..++.. +|+. +.++.+.. ..-. .++..+. ..+.|.++ ...+.|+.
T Consensus 289 ~~--~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~ 366 (430)
T 3tc9_A 289 VN--QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRI 366 (430)
T ss_dssp TT--TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEE
T ss_pred CC--CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEE
Confidence 33 3688887654 3443 33443320 0111 2332110 12456666 57889999
Q ss_pred EECCCCeeEEeccc-----------------CCCceEEEEEcC-CCcEEEEEe-CCcEEEEeC
Q 011452 305 LDVRNFELTEVSRT-----------------EFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 305 WDv~tg~~~~~l~g-----------------h~~~v~avaFsp-dg~llaS~s-D~TIklWd~ 348 (485)
+|. +|+....... ....++.+++.| +|.++++-. ++.|+..+.
T Consensus 367 i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 367 LTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp ECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred ECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 994 5765444311 245799999999 688888887 888887765
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.6e-05 Score=79.10 Aligned_cols=257 Identities=10% Similarity=0.082 Sum_probs=149.4
Q ss_pred cccCceEEEEeC-CCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCce-EEEEEcCCC--CeeEEEEecC
Q 011452 191 SLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIM-LLIFTKASG--HVPLKILSIE 265 (485)
Q Consensus 191 ~~~~~~~V~Fs~-pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~-ll~sss~~~--D~tIklWdi~ 265 (485)
.+..|..|+|++ .+|.+.++... +.|+.+|+++++....+. ...-..|+|+|++. +.++..... ...+-..+ .
T Consensus 135 ~~~~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~-~ 212 (430)
T 3tc9_A 135 GFGGAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT-R 212 (430)
T ss_dssp CCSCCCEEEEETTEEEEEEEEEBT-EEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE-G
T ss_pred CCCCCCEEEECCCCCCeEEEEeCC-CcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe-C
Confidence 366888999983 24665555443 889999998877544444 35688999998554 666643221 12333333 3
Q ss_pred CCeEE--EEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEec-ccCCCceEEEEEcCCCc-EEEEEe-
Q 011452 266 DGTVL--KSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQ-LFLTFR- 339 (485)
Q Consensus 266 tG~~L--~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~-llaS~s- 339 (485)
+|... ..+.. ..+...|++. |+++.|.++ ..++.|..+|..+++..... .+....++.++|+|+|+ ++++-.
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavd-p~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~ 290 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETH-PINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN 290 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEEC-TTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred CCceeeeeeecc-CCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence 44332 33332 2345677775 545666666 47889999999988763332 22235789999999999 667766
Q ss_pred CCcEEEEeCCC---cE--EEEeecC---CCCCCC-------CCee-EEEEC--------CCCCEEEEEecCCCCCCCCcC
Q 011452 340 NRTVAVWNFRG---EL--VTSFEDH---LLWHPD-------CNTN-NIYIT--------SDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 340 D~TIklWd~~G---~l--l~tl~gH---~~~~~~-------~~v~-svafS--------pDG~~LaS~s~d~~~d~~~~~ 395 (485)
++.|..++.+| ++ +.++.+. ..+... ..-. .+++. ++|.+.++=..
T Consensus 291 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~---------- 360 (430)
T 3tc9_A 291 QHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE---------- 360 (430)
T ss_dssp TTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG----------
T ss_pred CCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC----------
Confidence 89999988764 22 3444432 111000 0012 46663 55777777443
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCC-CCEEEEe
Q 011452 396 NAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDED-RNEIYTG 474 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-g~~LaSg 474 (485)
.+.|+.++ .+|+. .++-+... .+ . .++.+ . . ...+..|..-+.|+++|+ |..+++-
T Consensus 361 -n~~I~~i~-~~G~v-~~~~g~g~----------~~-~--~G~~d-----G-~-~~~~~~~~~P~giavd~~~g~lyVaD 417 (430)
T 3tc9_A 361 -NHCIRILT-PQGRV-TTFAGRGS----------NG-T--SGYND-----G-D-LRQEARFNHPEGIVYDEERECFFIGD 417 (430)
T ss_dssp -GTEEEEEC-TTSEE-EEEEECCT----------TS-S--SSCBC-----E-E-TTTTCBCSSEEEEEEETTTTEEEEEE
T ss_pred -CcEEEEEC-CCCcE-EEEEeCCC----------CC-C--CcccC-----C-C-chhhcEeCCCcEEEEECCCCEEEEEE
Confidence 47899998 56854 44444310 00 0 00000 0 0 000111336789999995 6666666
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
.....|+..+
T Consensus 418 ~~n~rIr~i~ 427 (430)
T 3tc9_A 418 RENRRIRKIG 427 (430)
T ss_dssp GGGTEEEEEE
T ss_pred CCCCeEEEEc
Confidence 6667777543
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00024 Score=72.39 Aligned_cols=227 Identities=12% Similarity=0.094 Sum_probs=150.3
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecccc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~ 193 (485)
...|+..+...++....+.+ -.....|+|.+.++.|.-+. ... +.|..+++..+.. ..++.. .+.
T Consensus 95 ~~~I~~i~~~~~~~~~~~~~--~~~~~gl~~d~~~~~ly~~D--~~~-------~~I~r~~~~g~~~---~~~~~~-~~~ 159 (386)
T 3v65_B 95 RIDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSD--VTL-------DRILRANLNGSNV---EEVVST-GLE 159 (386)
T ss_dssp BSCEEEECTTSCCCEEEECS--CSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTSCCE---EEEECS-SCS
T ss_pred CccceeeccCCCcEEEEecC--CCccEEEEEecCCCeEEEEe--CCC-------CcEEEEecCCCCc---EEEEeC-CCC
Confidence 45677777775444333332 33588999998777776532 222 3566666433322 122222 345
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
.|..+++++.+|.+..+....+.|.+.+++.......+.. ..-..|++.| ++.+..+.... ...|...+. +|+..
T Consensus 160 ~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~-dG~~~ 237 (386)
T 3v65_B 160 SPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSM-DGSGR 237 (386)
T ss_dssp CCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEET-TSCSC
T ss_pred CccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeC-CCCCc
Confidence 6778999866788888888888999999875432222332 4678999997 66666664322 257777786 45554
Q ss_pred EEee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 271 KSFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 271 ~tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
..+. .....-..|+|. +++++|..+ +..+.|..+|+........+......+..+++ .++.++.+.. .+.|...|
T Consensus 238 ~~~~~~~~~~PnGlavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~ 315 (386)
T 3v65_B 238 RIIADTHLFWPNGLTID-YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN 315 (386)
T ss_dssp EEEECSSCSCEEEEEEE-GGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCeeeEEEe-CCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence 4443 223445689986 567788777 57789999999865555555555668999999 7788888888 89999999
Q ss_pred -CCCcEEEEeecC
Q 011452 348 -FRGELVTSFEDH 359 (485)
Q Consensus 348 -~~G~ll~tl~gH 359 (485)
.+|+.++++...
T Consensus 316 ~~~G~~~~~i~~~ 328 (386)
T 3v65_B 316 KFTGKNQEIIRNK 328 (386)
T ss_dssp TTTCCSCEEEECS
T ss_pred CCCCcceEEEccC
Confidence 478888877654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.0001 Score=75.13 Aligned_cols=207 Identities=13% Similarity=0.111 Sum_probs=139.9
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG 267 (485)
.+.++..|+|++.++.+..+....+.|..+++.++.....+.. .....|++.+ ++.|..+... ...|.+.++...
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~--~~~I~~~~~dg~ 191 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSG--TSRIEVANLDGA 191 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETT--TTEEEECBTTSC
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCC--CCeEEEEeCCCC
Confidence 3567789999976888888888889999999887654333332 3456799996 6777666443 368888888543
Q ss_pred eEEEEeecCCcceeEEEEEecCCCEEEEEe-CC-CcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe-CCcE
Q 011452 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-EN-ENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTV 343 (485)
Q Consensus 268 ~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D-~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D~TI 343 (485)
.....+......-..|++. |.++.|..+. .+ +.|...++...............++.++|+| +++++.+-+ .+.|
T Consensus 192 ~~~~l~~~~l~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I 270 (386)
T 3v65_B 192 HRKVLLWQSLEKPRAIALH-PMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVI 270 (386)
T ss_dssp SCEEEECSSCSCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEE
T ss_pred ceEEeecCCCCCCcEEEEE-cCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEE
Confidence 3333333333455688875 5677777764 44 7898899885544444445566899999997 555666666 8899
Q ss_pred EEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 344 klWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
...|++|....++-.....+ -.+|++ .++.+.++-.. .+.|...|..+|+.+.++..
T Consensus 271 ~~~d~dG~~~~~~~~~~~~~----P~giav-~~~~ly~td~~-----------~~~V~~~~~~~G~~~~~i~~ 327 (386)
T 3v65_B 271 ERANLDGSHRKAVISQGLPH----PFAITV-FEDSLYWTDWH-----------TKSINSANKFTGKNQEIIRN 327 (386)
T ss_dssp EEECTTSCSCEEEECSSCSS----EEEEEE-ETTEEEEEETT-----------TTEEEEEETTTCCSCEEEEC
T ss_pred EEEeCCCCeeEEEEECCCCC----ceEEEE-ECCEEEEeeCC-----------CCeEEEEECCCCcceEEEcc
Confidence 99999866444443222222 467888 44555555432 58899999888988888764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=8.1e-05 Score=77.48 Aligned_cols=258 Identities=10% Similarity=0.081 Sum_probs=152.1
Q ss_pred cccCceEEEEeC--CCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCC--CeeEEEEecC
Q 011452 191 SLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASG--HVPLKILSIE 265 (485)
Q Consensus 191 ~~~~~~~V~Fs~--pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~--D~tIklWdi~ 265 (485)
.+..|..|+|++ .+|.+.++... +.|+.+|+++++....+. ......|+|+|++.|.++..... ...+-..+..
T Consensus 137 ~~~~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 137 AFDNIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCSCCCEEEECTTTTTCEEEEECBT-SCEEEEETTTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG
T ss_pred ccCCCceEEEccccCCCEEEEEeCC-CCEEEEECCCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC
Confidence 467788999983 14777776554 899999998888655443 35689999998666666643211 1112222222
Q ss_pred CCeE-EEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCc-EEEEEe-
Q 011452 266 DGTV-LKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQ-LFLTFR- 339 (485)
Q Consensus 266 tG~~-L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~-llaS~s- 339 (485)
.+.. -..+.. ...-..+++. +.++.|.++ ..++.|+.+|..+++....+ .+.......++|+|+|+ ++++-.
T Consensus 216 ~~~~~~~~~~~-~~~P~giavd-~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 216 SGFTERLSLCN-ARGAKTCAVH-PQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GTTCCEEEEEE-CSSBCCCEEC-TTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCeeccccccc-cCCCCEEEEe-CCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2211 012221 1233466764 445666666 47789999999988763322 12233456799999998 777777
Q ss_pred CCcEEEEeCC---CcE--EEEeecCC---CCCC-------CCCeeEEEE---------CCCCCEEEEEecCCCCCCCCcC
Q 011452 340 NRTVAVWNFR---GEL--VTSFEDHL---LWHP-------DCNTNNIYI---------TSDQDLIISYCKADSDDPLAEG 395 (485)
Q Consensus 340 D~TIklWd~~---G~l--l~tl~gH~---~~~~-------~~~v~svaf---------SpDG~~LaS~s~d~~~d~~~~~ 395 (485)
++.|..++.+ +++ ..++.+.. .+.. ...-..++| .++|.+.++-..
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~---------- 363 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD---------- 363 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT----------
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC----------
Confidence 8999998875 332 23444431 1100 001357999 888888887543
Q ss_pred CCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc-CCCCEEEEe
Q 011452 396 NAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD-EDRNEIYTG 474 (485)
Q Consensus 396 ~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs-pDg~~LaSg 474 (485)
.+.|+.++. +|+ +.++-+....+ ..+ +.+ . ... .+.-+..-++|+++ ++|..+++=
T Consensus 364 -n~~I~~~~~-~G~-v~t~~G~g~~~-------~~G------~~d-----G-~~~-~~~~~~~P~giavd~~~g~lyVaD 420 (433)
T 4hw6_A 364 -SHTVRVLTP-EGR-VTTYAGRGNSR-------EWG------YVD-----G-ELR-SQALFNHPTSIAYDMKRKCFYIGD 420 (433)
T ss_dssp -TTEEEEECT-TSE-EEEEECCCTTC-------SSC------CBC-----E-ETT-TTCBCSSEEEEEEETTTTEEEEEE
T ss_pred -CCEEEEECC-CCC-EEEEEeCCCCC-------ccc------cCC-----C-ccc-cccEeCCCcEEEEECCCCEEEEEe
Confidence 578999984 684 45565532000 000 000 0 000 01113467899999 777777776
Q ss_pred cCCCcEEEcc
Q 011452 475 NRHGLVHVWS 484 (485)
Q Consensus 475 s~DgtVklWd 484 (485)
...+.|+..+
T Consensus 421 ~~n~rIr~i~ 430 (433)
T 4hw6_A 421 CDNHRVRKIA 430 (433)
T ss_dssp GGGTEEEEEE
T ss_pred CCCCEEEEEe
Confidence 6777787654
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00072 Score=67.88 Aligned_cols=226 Identities=12% Similarity=0.095 Sum_probs=147.9
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccC
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~ 194 (485)
..|+..+....+....+.+ -.....|+|.+.++.|.-+- ... +.|..+++..+.. ..+... .+..
T Consensus 53 ~~I~~i~~~g~~~~~~~~~--~~~~~~l~~d~~~~~ly~~D--~~~-------~~I~r~~~~g~~~---~~~~~~-~~~~ 117 (349)
T 3v64_C 53 IDIRQVLPHRSEYTLLLNN--LENAIALDFHHRRELVFWSD--VTL-------DRILRANLNGSNV---EEVVST-GLES 117 (349)
T ss_dssp SCEEEECTTSCCEEEEECS--CSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEETTSCSC---EEEECS-SCSC
T ss_pred cceEEEeCCCCeeEEeecC--CCceEEEEEeccccEEEEEe--ccC-------CceEEEecCCCCc---eEEEeC-CCCC
Confidence 3466667664333332322 23478999998877776532 222 3565566433322 122222 3456
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
|..+++++.+|.+..+.+..+.|.+.+++.......+.. ..-..|++.| ++.+..+.... ...|...++ +|+...
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~-~~~I~r~~~-dG~~~~ 195 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSM-DGSGRR 195 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS-SCEEEEEET-TSCSCE
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC-CCEEEEEeC-CCCCcE
Confidence 789999866788888888889999999875432222322 4678999998 67766664322 257777776 555555
Q ss_pred Eee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe-
Q 011452 272 SFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN- 347 (485)
Q Consensus 272 tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd- 347 (485)
++- .....-..|+|. +++++|..+ ...+.|...|+........+......+..+++ .++.++.+-. .+.|...|
T Consensus 196 ~~~~~~~~~PnGla~d-~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~ 273 (349)
T 3v64_C 196 IIADTHLFWPNGLTID-YAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANK 273 (349)
T ss_dssp ESCCSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred EEEECCCCCcceEEEe-CCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEc
Confidence 553 223445688986 567888777 57789999999865544455555678999999 6788888887 89999999
Q ss_pred CCCcEEEEeecC
Q 011452 348 FRGELVTSFEDH 359 (485)
Q Consensus 348 ~~G~ll~tl~gH 359 (485)
.+|+.++++...
T Consensus 274 ~~G~~~~~i~~~ 285 (349)
T 3v64_C 274 FTGKNQEIIRNK 285 (349)
T ss_dssp TTCCSCEEEECS
T ss_pred cCCCccEEeccC
Confidence 478877777643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.46 E-value=6.2e-05 Score=79.85 Aligned_cols=225 Identities=12% Similarity=0.046 Sum_probs=141.0
Q ss_pred cCEEEEEeCCCeEEeeecccC----cEEEEee------cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 105 RDIVFALAQSGVCAAFCRETN----QRICFLN------VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG----~~l~tl~------g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
+..++++..+++|.++|..+. +..+++. ......=..+..+||| .+|++..+. +. ..+ ..+-+.|
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-~g--~~~-g~v~vlD 170 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-EG--EGP-GGILMLD 170 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-TS--CSC-CEEEEEC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-CC--CCC-CeEEEEE
Confidence 356777888999999998877 6777763 0001123567889999 777655431 10 111 3566667
Q ss_pred eccCCcCcccceeeec--cccCceEEEEeCCCCeEEEEee-------------------CCCcEEEeecCCCeEEEEEcC
Q 011452 175 IRRGKPDAGFALFESE--SLKWPGFVEFDDVNGKVLTYSA-------------------QDSIYKVFDLKNYTMLYSISD 233 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~--~~~~~~~V~Fs~pnG~~Las~s-------------------~D~tiKlWdl~~g~~l~tl~~ 233 (485)
..++++.. .+..+ .......+-|+ |++++++++. .+.+|.+||+.+++.+.++.-
T Consensus 171 ~~T~~v~~---~~~~~~~~~~~~Yd~~~~-p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 171 HYSFEPLG---KWEIDRGDQYLAYDFWWN-LPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp TTTCCEEE---ECCSBCTTCCCCCCEEEE-TTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred CCCCeEEE---EEccCCCCccccceEEEC-CCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 66666632 22211 11111236777 7899888874 379999999999999888863
Q ss_pred ----CcEEEEEE--cCCceEEEEEcC----CCCeeEEEEecCCCeE--EEEe--ec-----C-----------CcceeEE
Q 011452 234 ----KNVQEIKI--SPGIMLLIFTKA----SGHVPLKILSIEDGTV--LKSF--NH-----L-----------LHRNKKV 283 (485)
Q Consensus 234 ----~~V~~Vaf--Spg~~ll~sss~----~~D~tIklWdi~tG~~--L~tl--~~-----~-----------~~~~~~V 283 (485)
..-..|+| +|++..+..... +.+.+|-+|....|+. ++++ .. . ......|
T Consensus 247 g~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I 326 (462)
T 2ece_A 247 GEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDI 326 (462)
T ss_dssp CTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCE
T ss_pred CCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEE
Confidence 24667877 887765544332 1346887766555542 1211 10 0 0224577
Q ss_pred EEEecCCCEEEEEe-CCCcEEEEECC---CCeeEEecccCC--------------CceEEEEEcCCCcEEEEEe
Q 011452 284 DFIEQFNEKLLVKQ-ENENLQILDVR---NFELTEVSRTEF--------------MTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 284 ~f~~~~~~~lls~s-~D~tIkIWDv~---tg~~~~~l~gh~--------------~~v~avaFspdg~llaS~s 339 (485)
.++ +|+..|.++. ..++|.++|+. +.+++....... ..+..++++|||++|..+.
T Consensus 327 ~lS-~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 327 DIS-LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEC-TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEC-CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 775 7888888886 67899999986 235554442210 1488999999999877653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=0.0003 Score=69.36 Aligned_cols=182 Identities=10% Similarity=0.064 Sum_probs=122.9
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC---CeEEEE-eecCCcceeEEEEEe
Q 011452 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED---GTVLKS-FNHLLHRNKKVDFIE 287 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t---G~~L~t-l~~~~~~~~~V~f~~ 287 (485)
...|+.-|+.+.+....+. .....+++|++ ++.+..+... .+.|..+++.+ |....+ +.........+++.
T Consensus 9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~--~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd- 85 (316)
T 1ijq_A 9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLS--QRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD- 85 (316)
T ss_dssp BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETT--TTEEEEEEC--------CEEEECSSCSCCCEEEEE-
T ss_pred CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECC--CCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEe-
Confidence 4578888998876555554 35788999996 6777776443 37899999865 233333 33223445678875
Q ss_pred cCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe-C-CcEEEEeCCCcEEEEeec-CCCC
Q 011452 288 QFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFED-HLLW 362 (485)
Q Consensus 288 ~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D-~TIklWd~~G~ll~tl~g-H~~~ 362 (485)
+.++.|..+ ..++.|.+.|+...............+..+++.| +|.++.+.. . +.|...+++|+..+.+-. ...+
T Consensus 86 ~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~ 165 (316)
T 1ijq_A 86 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW 165 (316)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC
T ss_pred ecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCC
Confidence 446777666 5789999999986544444444556899999998 566666665 4 789888999887766642 2334
Q ss_pred CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 363 HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 363 ~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
-+.|+++|+++.|.-+.. ..+.|...|+. |....++
T Consensus 166 -----P~gla~d~~~~~lY~~D~----------~~~~I~~~d~d-g~~~~~~ 201 (316)
T 1ijq_A 166 -----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 201 (316)
T ss_dssp -----EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred -----ceEEEEeccCCEEEEEEC----------CCCeEEEEecC-CCceEEE
Confidence 689999998887766543 25789999976 5444444
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.8e-05 Score=83.11 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=137.1
Q ss_pred EEEEEe------CCCeEEeeecccCcEEEEeecCCccc-----------------------------------------E
Q 011452 107 IVFALA------QSGVCAAFCRETNQRICFLNVTADEV-----------------------------------------I 139 (485)
Q Consensus 107 ~ias~s------~dgtiklW~~~tG~~l~tl~g~~~~~-----------------------------------------i 139 (485)
+|+.++ .+|.+..+|.+||+++=+.... +.. -
T Consensus 170 ~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~-~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w 248 (582)
T 1flg_A 170 LLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFV-EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW 248 (582)
T ss_dssp EEEECCBCGGGCCBCEEEEECTTTCCEEEEEESS-TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCC
T ss_pred EEEEeccccccCCCCEEEEEECCCCCEEeecCCC-ccccccccCcccccccccccccCCCccccccccccccccCCcccc
Confidence 676665 3899999999999987654321 000 0
Q ss_pred EEEEEeeCCCEEEEEEeecC-----------------CCCcccceeEEEEeEeccCCcCcccceeeeccc---c------
Q 011452 140 RSLFYNKNNDSLITVSVYAS-----------------DNFSSLRCRSTRIEYIRRGKPDAGFALFESESL---K------ 193 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~-----------------~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~---~------ 193 (485)
.+.+|.|+..+|..++.... ++ +--..+.-+|+.+|+. +|..... .
T Consensus 249 ~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~---~~~~~v~AlD~~TG~~-----~W~~q~~~~d~wd~~~~ 320 (582)
T 1flg_A 249 QSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDS---LYTSGQVGVDPSSGEV-----KWFYQHTPNDAWDFSGN 320 (582)
T ss_dssp SCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCC---TTCSEEEEECTTTCCE-----EEEEESSTTCCSCCCCC
T ss_pred CCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCC---cccceEEEEeCCCCCE-----EEEEeCCCCCcccccCC
Confidence 24678888887776553110 11 1113666778888987 4553211 1
Q ss_pred -CceEEEEeCCCCe---EEEEeeCCCcEEEeecCCCeEEEEEcCC----cEE----------------------------
Q 011452 194 -WPGFVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQ---------------------------- 237 (485)
Q Consensus 194 -~~~~V~Fs~pnG~---~Las~s~D~tiKlWdl~~g~~l~tl~~~----~V~---------------------------- 237 (485)
.+-.+.....+|+ +|+.++.++.+.++|.++|+++....-. +..
T Consensus 321 ~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~ 400 (582)
T 1flg_A 321 NELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGK 400 (582)
T ss_dssp CCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCC
T ss_pred CCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCC
Confidence 1112233214784 7888999999999999999998766421 111
Q ss_pred ---------------EEEEcCC-ceEEEEEc------------------------------CCCCeeEEEEecCCCeEEE
Q 011452 238 ---------------EIKISPG-IMLLIFTK------------------------------ASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 238 ---------------~VafSpg-~~ll~sss------------------------------~~~D~tIklWdi~tG~~L~ 271 (485)
.++|+|. +.+.+... .+.+++|.-||+.||+.+.
T Consensus 401 ~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W 480 (582)
T 1flg_A 401 AVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVW 480 (582)
T ss_dssp CEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEE
T ss_pred ceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEE
Confidence 2455652 23322211 1235889999999999998
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCC-ceEEEEEcCCCcEEEEEe
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFM-TPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~-~v~avaFspdg~llaS~s 339 (485)
+.+.... +..-... ..++.+.+++.|+.|+.+|.+||+.+-.++.... ....++|..||++.+...
T Consensus 481 ~~~~~~~-~~~g~~~-tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 481 EHKEHLP-LWAGVLA-TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp EEEESSC-CCSCCEE-ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred EecCCCC-CcccceE-eCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 8874322 2211111 2367888888999999999999998877654322 222366778887665543
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=0.0004 Score=68.49 Aligned_cols=205 Identities=8% Similarity=0.023 Sum_probs=134.8
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC---CeEEEE-EcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEec
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN---YTMLYS-ISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~---g~~l~t-l~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi 264 (485)
+..|..++|++.++.+..+....+.|..+++.+ +....+ +.. .....|++.+ ++.+..+... ...|.+.+.
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~--~~~I~~~~~ 106 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT 106 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECC--CCEEEEEeC
Confidence 456778999865678888888889999999876 232222 322 3568899995 7777666443 368999998
Q ss_pred CCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeeEEec-ccCCCceEEEEEcCCC-cEEEEEe
Q 011452 265 EDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVS-RTEFMTPSAFIFLYEN-QLFLTFR 339 (485)
Q Consensus 265 ~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s~D--~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg-~llaS~s 339 (485)
. |+..+++ ......-..+++. |.++.|..+..+ +.|...++. |...+++ ......++.++++|++ +++.+-+
T Consensus 107 ~-g~~~~~~~~~~~~~P~~iavd-p~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 107 K-GVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp T-SSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEET
T ss_pred C-CCceEEEEECCCCCcceEEeC-CCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEEC
Confidence 5 4444444 3233455688875 567777776533 688888887 4444433 3456689999999865 5556656
Q ss_pred -CCcEEEEeCCCcEEEEeec-C-CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 340 -NRTVAVWNFRGELVTSFED-H-LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 340 -D~TIklWd~~G~ll~tl~g-H-~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
.+.|...|++|...+++-. . ...+ -.+|++. ++.+.++-.. .+.|...|..+|+.+.++..
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~----P~giav~-~~~ly~~d~~-----------~~~V~~~~~~~g~~~~~i~~ 247 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAH----PFSLAVF-EDKVFWTDII-----------NEAIFSANRLTGSDVNLLAE 247 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSS----EEEEEEE-TTEEEEEETT-----------TTEEEEEETTTCCCCEEEEC
T ss_pred CCCeEEEEecCCCceEEEeecCCccCC----cEEEEEE-CCEEEEEECC-----------CCeEEEEeCCCCcceEEEec
Confidence 8899999998765554432 1 1222 4578884 3555555432 58999999889988877754
Q ss_pred C
Q 011452 417 S 417 (485)
Q Consensus 417 H 417 (485)
.
T Consensus 248 ~ 248 (316)
T 1ijq_A 248 N 248 (316)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00038 Score=69.89 Aligned_cols=182 Identities=11% Similarity=0.097 Sum_probs=123.8
Q ss_pred CCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCC
Q 011452 214 DSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE 291 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~ 291 (485)
...|+..++.+.+....+.+ .....|+|.+ ++.|..+... .+.|..+++.++.....+.........+++. +.++
T Consensus 52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~--~~~I~r~~~~g~~~~~~~~~~~~~p~glavd-~~~g 128 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVT--LDRILRANLNGSNVEEVVSTGLESPGGLAVD-WVHD 128 (349)
T ss_dssp BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEEEECSSCSCCCEEEEE-TTTT
T ss_pred ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEecc--CCceEEEecCCCCceEEEeCCCCCccEEEEe-cCCC
Confidence 45677778876555444443 5688999995 7777766433 3689999987665444343223344578875 4567
Q ss_pred EEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe-C-CcEEEEeCCCcEEEEeec-CCCCCCCC
Q 011452 292 KLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR-N-RTVAVWNFRGELVTSFED-HLLWHPDC 366 (485)
Q Consensus 292 ~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s-D-~TIklWd~~G~ll~tl~g-H~~~~~~~ 366 (485)
.|..+ ...+.|.+.++........+......+..+++.| +|.++.+-. + +.|...+++|.....+-. ...+
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~---- 204 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW---- 204 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSC----
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC----
Confidence 77666 5778999999986554444445567899999998 566777776 6 889999999876666532 2333
Q ss_pred CeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 367 NTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 367 ~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
-+.|+|+|++..|.-+.. ..+.|...|+. |....++
T Consensus 205 -PnGla~d~~~~~lY~aD~----------~~~~I~~~~~d-G~~~~~~ 240 (349)
T 3v64_C 205 -PNGLTIDYAGRRMYWVDA----------KHHVIERANLD-GSHRKAV 240 (349)
T ss_dssp -EEEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEE
T ss_pred -cceEEEeCCCCEEEEEEC----------CCCEEEEEeCC-CCceEEE
Confidence 689999998777765543 25789999975 4433333
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.8e-05 Score=83.32 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=120.8
Q ss_pred EEEEeCCCCeEEEEeeCCC-----------cEEEeecCCCe--EEEEEc---CCcEEEEEEcCCceEEEEEcCCCCeeEE
Q 011452 197 FVEFDDVNGKVLTYSAQDS-----------IYKVFDLKNYT--MLYSIS---DKNVQEIKISPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~-----------tiKlWdl~~g~--~l~tl~---~~~V~~VafSpg~~ll~sss~~~D~tIk 260 (485)
.+++.+.+|++++.|+.+. .+.+||+.+++ .+..+. .....++++.+++++++.+..+ +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~-~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-AKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS-TTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCC-CCceE
Confidence 5677633999999998653 68899998876 233332 2334567888877777765433 35899
Q ss_pred EEecCCCeEEEEeecCCccee-EEEEEecCCCEEEEEe-CC-----CcEEEEECCCCeeEEeccc-----CCCceEEEEE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQ-EN-----ENLQILDVRNFELTEVSRT-----EFMTPSAFIF 328 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s-~D-----~tIkIWDv~tg~~~~~l~g-----h~~~v~avaF 328 (485)
+||..+++-...-.-+..+.. .+++. +++..+++|+ .+ .++.+||..+.+....... .... ...++
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~-~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~-~~~~~ 346 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD-KQGLY 346 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC-TTGGG
T ss_pred EecCcCCceeECCCCCccccccceEEe-cCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc-cccee
Confidence 999998765443222223332 34433 4666667777 44 6899999999876554100 0000 00122
Q ss_pred cCCCcEEEEEe----------CCcEEEEeCC-CcEEEEeecCCC-----CCCCCCeeEEEEC-CCCCEEEEEecCCCCCC
Q 011452 329 LYENQLFLTFR----------NRTVAVWNFR-GELVTSFEDHLL-----WHPDCNTNNIYIT-SDQDLIISYCKADSDDP 391 (485)
Q Consensus 329 spdg~llaS~s----------D~TIklWd~~-G~ll~tl~gH~~-----~~~~~~v~svafS-pDG~~LaS~s~d~~~d~ 391 (485)
..++.+++-+. ..++..||.. .+....+..+.. ..+.+ -.++.|. .+|++++.|+.+..++.
T Consensus 347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~-~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC-GNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT-CEEEEEETTTTEEEEECCBSSSSSS
T ss_pred ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCC-CceEeccCCCCeEEEEeCCCCCCCC
Confidence 34444444443 4567889985 544444433321 00111 2455554 48899999875211110
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEe
Q 011452 392 LAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.....-.+|.+||..+.+.....
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~ 448 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFA 448 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEEC
T ss_pred CcCCcceEEEcCCCCCCCeeEEc
Confidence 00000117889999888765443
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00057 Score=67.68 Aligned_cols=265 Identities=13% Similarity=0.043 Sum_probs=147.2
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeec---CCcccEEEEEEeeCCCEEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNV---TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g---~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~ 168 (485)
....+.+|.|. +..+| .+..|.+ +...+.|+--..+.. .++..+++|+|+| +..+| ++. ..
T Consensus 34 ~~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~---~g------- 99 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGE---PP------- 99 (327)
T ss_dssp CSSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEE---TT-------
T ss_pred CCCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EEC---CC-------
Confidence 34578999997 55555 5667766 333444543222221 1244799999987 44443 332 11
Q ss_pred EEEEeEecc-CCcCcccceeeecc-----ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEEcCCcEEEE
Q 011452 169 STRIEYIRR-GKPDAGFALFESES-----LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKNVQEI 239 (485)
Q Consensus 169 t~~lw~i~~-G~~~~~~~lf~~~~-----~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl~~~~V~~V 239 (485)
.+ +.-.+ |+- |+... -..+..|.+. +++++++.+.....+|-+| .|+ .+.......+.++
T Consensus 100 ~i--~~S~DgG~t------W~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~g~v~~S~D--gG~tW~~~~~~~~~~~~~~ 168 (327)
T 2xbg_A 100 IM--LHTTDGGQS------WSQIPLDPKLPGSPRLIKAL-GNGSAEMITNVGAIYRTKD--SGKNWQALVQEAIGVMRNL 168 (327)
T ss_dssp EE--EEESSTTSS------CEECCCCTTCSSCEEEEEEE-ETTEEEEEETTCCEEEESS--TTSSEEEEECSCCCCEEEE
T ss_pred eE--EEECCCCCC------ceECccccCCCCCeEEEEEE-CCCCEEEEeCCccEEEEcC--CCCCCEEeecCCCcceEEE
Confidence 11 11122 332 33211 0223457776 4678887765444445555 343 2222223478999
Q ss_pred EEcCCceEEEEEcCCCCeeEEEEec--CCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecc
Q 011452 240 KISPGIMLLIFTKASGHVPLKILSI--EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSR 317 (485)
Q Consensus 240 afSpg~~ll~sss~~~D~tIklWdi--~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~ 317 (485)
+++|++.+++.+... ...+-+|- ++-+.+.. ........|++. ++ +.+.+.+.++.+.+++...|+.-+.+.
T Consensus 169 ~~~~~~~~~~~g~~G--~~~~S~d~gG~tW~~~~~--~~~~~~~~~~~~-~~-g~~~~~~~~G~~~~s~~D~G~tW~~~~ 242 (327)
T 2xbg_A 169 NRSPSGEYVAVSSRG--SFYSTWEPGQTAWEPHNR--TTSRRLHNMGFT-PD-GRLWMIVNGGKIAFSDPDNSENWGELL 242 (327)
T ss_dssp EECTTSCEEEEETTS--SEEEEECTTCSSCEEEEC--CSSSCEEEEEEC-TT-SCEEEEETTTEEEEEETTEEEEECCCB
T ss_pred EEcCCCcEEEEECCC--cEEEEeCCCCCceeECCC--CCCCccceeEEC-CC-CCEEEEeCCceEEEecCCCCCeeEecc
Confidence 999877666554322 34444442 22233321 223455677774 43 466677778888887644354433221
Q ss_pred -c---CCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCC
Q 011452 318 -T---EFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPL 392 (485)
Q Consensus 318 -g---h~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~ 392 (485)
+ +...+.+++|.|++++++.+.+++| ++..+ |+--+.+...... + ..++.|+|.+++++++.+.
T Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~-~-~~~~~v~~~~~~~~~~~G~-------- 311 (327)
T 2xbg_A 243 SPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQTWQQDVDVKKV-P-SNFYKILFFSPDQGFILGQ-------- 311 (327)
T ss_dssp CTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTSSCEECGGGTTS-S-SCCCEEEEEETTEEEEECS--------
T ss_pred CCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCcccEEcCccCCC-C-CCeEEEEEECCCceEEEcC--------
Confidence 1 2345889999999999998888887 56665 7655555422110 0 1167899987777666553
Q ss_pred CcCCCCeEEEEe
Q 011452 393 AEGNAGSINISN 404 (485)
Q Consensus 393 ~~~~DgtIklWd 404 (485)
+|+|.-++
T Consensus 312 ----~G~i~~~~ 319 (327)
T 2xbg_A 312 ----KGILLRYV 319 (327)
T ss_dssp ----TTEEEEEC
T ss_pred ----CceEEEEc
Confidence 58776554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-06 Score=93.18 Aligned_cols=185 Identities=11% Similarity=0.011 Sum_probs=106.5
Q ss_pred ceEEEEeCCCCeEEEEeeC-----CCcEEEeecCCC-eEEE-EEcCCcEEEEEEcCCceEEEEEcCCCC---eeEEEEec
Q 011452 195 PGFVEFDDVNGKVLTYSAQ-----DSIYKVFDLKNY-TMLY-SISDKNVQEIKISPGIMLLIFTKASGH---VPLKILSI 264 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~-----D~tiKlWdl~~g-~~l~-tl~~~~V~~VafSpg~~ll~sss~~~D---~tIklWdi 264 (485)
....+||+|||+.||.+.. ..+|+++|+.+| +.+. .+. ....+++|||++..+++.+.+.. ..|.++++
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~-~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l 254 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS-GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM 254 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE-EECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc-CceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence 4478896369999997643 236999999999 6321 111 11246889987644444333221 46888899
Q ss_pred CCCeE--EEEeec-CCcceeEEEEEecCCCEEEEEe---CCCcEEEEECCCC--ee--EEecccCCCceEEEEEcCCCcE
Q 011452 265 EDGTV--LKSFNH-LLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRNF--EL--TEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 265 ~tG~~--L~tl~~-~~~~~~~V~f~~~~~~~lls~s---~D~tIkIWDv~tg--~~--~~~l~gh~~~v~avaFspdg~l 334 (485)
.+++. ...+.. .......+.|+ ||+.+|+..+ ....|.++|+.++ +. .....++....+++.|..++++
T Consensus 255 gt~~~~~~lv~~~~~~~~~~~~~~S-pDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~l 333 (751)
T 2xe4_A 255 GKLQSEDVCLYEEHNPLFSAFMYKA-ADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHL 333 (751)
T ss_dssp TSCGGGCEEEEECCCTTCEEEEEEC-TTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTEE
T ss_pred CCCchhcEEEEecCCCceEEEEEEC-CCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCEE
Confidence 88752 222321 11234467775 7888888764 3456888899876 34 4444445556677766666766
Q ss_pred EEEEe-C--Cc--EEEEeCC-CcEEEE-eecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 335 FLTFR-N--RT--VAVWNFR-GELVTS-FEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 335 laS~s-D--~T--IklWd~~-G~ll~t-l~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
++... + +. |-++|+. +...+. +-.|.. +..+.++.+. ++.+++++..
T Consensus 334 ~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~---~~~l~~~~~~-~~~lv~~~~~ 387 (751)
T 2xe4_A 334 VILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE---DVFMESIAVR-SNYLVVAGRR 387 (751)
T ss_dssp EEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS---SEEEEEEEEC-SSEEEEEEEE
T ss_pred EEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC---CcEEEEEEEE-CCEEEEEEEe
Confidence 66665 5 33 4445554 232233 333321 1124556554 2345555554
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=9e-05 Score=80.77 Aligned_cols=159 Identities=10% Similarity=-0.027 Sum_probs=98.7
Q ss_pred EEEEeCCCCe---EEEEeeCCCcEEEeecCCCeEEEEEcC-C-----cEEE-EEEcCCceEEEEEcCC---CCeeEEEEe
Q 011452 197 FVEFDDVNGK---VLTYSAQDSIYKVFDLKNYTMLYSISD-K-----NVQE-IKISPGIMLLIFTKAS---GHVPLKILS 263 (485)
Q Consensus 197 ~V~Fs~pnG~---~Las~s~D~tiKlWdl~~g~~l~tl~~-~-----~V~~-VafSpg~~ll~sss~~---~D~tIklWd 263 (485)
.+++++.+|+ .|..++.|+.+.-.|.++|+.+-.... . .+.+ -.+. ++++++..+.. .++.|.-+|
T Consensus 110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D 188 (599)
T 1w6s_A 110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYD 188 (599)
T ss_dssp CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEE
T ss_pred ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEE
Confidence 3566422454 144466799999999999998866531 1 1211 1111 56666543211 257999999
Q ss_pred cCCCeEEEEeecCCcc-------------------------------------ee-EEEEEecCCCEEEEEeCC------
Q 011452 264 IEDGTVLKSFNHLLHR-------------------------------------NK-KVDFIEQFNEKLLVKQEN------ 299 (485)
Q Consensus 264 i~tG~~L~tl~~~~~~-------------------------------------~~-~V~f~~~~~~~lls~s~D------ 299 (485)
.+||+++-++...... ++ ..++. +..+.+..+..+
T Consensus 189 ~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d-~~~g~vy~g~g~~~p~~~ 267 (599)
T 1w6s_A 189 VKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD-PGTNLIYFGTGNPAPWNE 267 (599)
T ss_dssp TTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE-TTTTEEEEECCCCSCSCG
T ss_pred CCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe-CCCCEEEEeCCCCccccC
Confidence 9999999887632111 11 22332 456677776543
Q ss_pred ----------CcEEEEECCCCeeEEecc--cCCC-------ceEEEEEc-CCC---cEEEEEe-CCcEEEEeCC-CcEEE
Q 011452 300 ----------ENLQILDVRNFELTEVSR--TEFM-------TPSAFIFL-YEN---QLFLTFR-NRTVAVWNFR-GELVT 354 (485)
Q Consensus 300 ----------~tIkIWDv~tg~~~~~l~--gh~~-------~v~avaFs-pdg---~llaS~s-D~TIklWd~~-G~ll~ 354 (485)
.+|.-+|.+||+.+-... .|.. .+.-+... .+| .+++.++ ++.+-+.|.+ |+++.
T Consensus 268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw 347 (599)
T 1w6s_A 268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS 347 (599)
T ss_dssp GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence 489999999999876543 2321 11222222 578 5777787 9999999995 99987
Q ss_pred Eee
Q 011452 355 SFE 357 (485)
Q Consensus 355 tl~ 357 (485)
..+
T Consensus 348 ~~~ 350 (599)
T 1w6s_A 348 ANK 350 (599)
T ss_dssp EEE
T ss_pred ccc
Confidence 654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.31 E-value=0.0026 Score=65.18 Aligned_cols=230 Identities=11% Similarity=0.096 Sum_probs=149.5
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc--Ccccceeeecc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DAGFALFESES 191 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~--~~~~~lf~~~~ 191 (485)
...|+..++++++....+. ....+..|+|.+.++.|.-+. ... +.|...++ .|.. .....+.. ..
T Consensus 91 ~~~I~~i~l~~~~~~~~~~--~~~~~~~l~~d~~~~~lywsD--~~~-------~~I~~~~~-~g~~~~~~~~~~~~-~~ 157 (400)
T 3p5b_L 91 RHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSD--LSQ-------RMICSTQL-DRAHGVSSYDTVIS-RD 157 (400)
T ss_dssp TTEEEEECTTSCSCEEEEC--SCSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEEC-------CCCEEEEC-SS
T ss_pred cceeEEEccCCcceeEecc--ccCcceEEeeeeccCceEEEe--cCC-------CeEEEEEc-ccCCCCCcceEEEe-CC
Confidence 3567777777544333332 234688999999877776532 222 35555564 3311 00012333 24
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
+..|..++++..++.+..+.+..+.|.+.+++.......+. ......|++.| ++.+..+.... ...|...++ +|+
T Consensus 158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~-~~~I~~~~~-dG~ 235 (400)
T 3p5b_L 158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGT-PAKIKKGGL-NGV 235 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSS-SCCEEEEET-TSC
T ss_pred CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCC-CCEEEEEeC-CCC
Confidence 56788999986688888888888999999987554333333 24689999998 67776664321 257888887 455
Q ss_pred EEEEe-ecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc--cCCCceEEEEEcCCCcEEEEEe-CCcE
Q 011452 269 VLKSF-NHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTFR-NRTV 343 (485)
Q Consensus 269 ~L~tl-~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspdg~llaS~s-D~TI 343 (485)
..+++ ......-..|++. +++++|..+ ...+.|...|+.......+.. +....+.++++ .++.++.+.. .+.|
T Consensus 236 ~~~~~~~~~l~~P~glavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V 313 (400)
T 3p5b_L 236 DIYSLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAI 313 (400)
T ss_dssp SCEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSE
T ss_pred ccEEEEECCCCceEEEEEE-eCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeE
Confidence 54444 3333455688886 567888777 578899999998654444433 23457888888 6678888888 8899
Q ss_pred EEEeC-CCcEEEEeecCC
Q 011452 344 AVWNF-RGELVTSFEDHL 360 (485)
Q Consensus 344 klWd~-~G~ll~tl~gH~ 360 (485)
...|. +|+.+.++....
T Consensus 314 ~~~~~~~G~~~~~i~~~~ 331 (400)
T 3p5b_L 314 FSANRLTGSDVNLLAENL 331 (400)
T ss_dssp EEEESSSCCCCEEEECSC
T ss_pred EEEEcCCCCceEEEecCC
Confidence 99995 698887776443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00091 Score=68.57 Aligned_cols=206 Identities=8% Similarity=0.027 Sum_probs=136.5
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEec
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g----~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi 264 (485)
+..+..|+|++.++.+..+....+.|+.+++... .....+. -.....||+.+ ++.|..+... .+.|.+.++
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~--~~~I~~~~~ 188 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT 188 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEECT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECC--CCeEEEEeC
Confidence 5667789999667888888888899999998752 1222222 24678999996 7777776543 368999998
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-C
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-N 340 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D 340 (485)
+.+.....+......-..|++. |.++.|..+. ..+.|...++...............++.++|+|+++ ++.+-+ .
T Consensus 189 ~g~~~~~l~~~~~~~P~~iavd-p~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~ 267 (400)
T 3p5b_L 189 KGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 267 (400)
T ss_dssp TTCSEEEEEECSSCCEEEEEEE-TTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeCCCCCcceEEEe-cccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCC
Confidence 6544433344334456688876 5567777764 347899999985544444445567899999997655 555555 8
Q ss_pred CcEEEEeCCCcEEEEee-cC-CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 341 RTVAVWNFRGELVTSFE-DH-LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 341 ~TIklWd~~G~ll~tl~-gH-~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++|...|++|.-.+++- ++ ...+ -.+|++ ..+.+..+-.. .+.|...|..+|+.+.++..
T Consensus 268 ~~I~~~d~dG~~~~~~~~~~~~l~~----P~gl~v-~~~~lywtd~~-----------~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 268 HSISSIDVNGGNRKTILEDEKRLAH----PFSLAV-FEDKVFWTDII-----------NEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp TEEEEEETTSCCCEEEEECSSTTSS----EEEEEE-ETTEEEEEESS-----------SCSEEEEESSSCCCCEEEEC
T ss_pred CEEEEEeCCCCccEEEEeCCCCCCC----CEEEEE-eCCEEEEecCC-----------CCeEEEEEcCCCCceEEEec
Confidence 89999999876544443 21 1222 346776 23344444332 57899999889988877764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00063 Score=70.72 Aligned_cols=235 Identities=10% Similarity=0.038 Sum_probs=145.1
Q ss_pred EEEEEec----CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeE
Q 011452 99 IEIVAAR----DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (485)
Q Consensus 99 ~~i~~s~----~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~ 174 (485)
..|++.. ..|..+...+.|+.++.++|+... +.. .......|+++|+|+.+++ ...+..+ +...++.
T Consensus 142 ~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-~~~-~~~~P~giavd~dG~lyVa-d~~~~~~------~~gv~~~ 212 (433)
T 4hw6_A 142 WRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-KTT-NIGQCADVNFTLNGDMVVV-DDQSSDT------NTGIYLF 212 (433)
T ss_dssp CEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-ECC-CCSCEEEEEECTTCCEEEE-ECCSCTT------SEEEEEE
T ss_pred ceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-eec-CCCCccEEEECCCCCEEEE-cCCCCcc------cceEEEE
Confidence 4667762 556666555889999987676554 433 3445899999999995444 2111111 1222223
Q ss_pred eccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE---cC-CcEEEEEEcCCce-EEE
Q 011452 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI---SD-KNVQEIKISPGIM-LLI 249 (485)
Q Consensus 175 i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl---~~-~~V~~VafSpg~~-ll~ 249 (485)
...+..... ..+. .+.+|..+++++.+|.+.++...++.|..+|..+|+....+ .. ..-..|+|+|++. |.+
T Consensus 213 ~~~~~~~~~-~~~~--~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 213 TRASGFTER-LSLC--NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp CGGGTTCCE-EEEE--ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred ECCCCeecc-cccc--ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 334433211 1222 35678889998438988888778889999999888763332 12 2334699998654 666
Q ss_pred EEcCCCCeeEEEEecC--CCeE--EEEeecC---------------CcceeEEEEEe-------cCCCEEEEE-eCCCcE
Q 011452 250 FTKASGHVPLKILSIE--DGTV--LKSFNHL---------------LHRNKKVDFIE-------QFNEKLLVK-QENENL 302 (485)
Q Consensus 250 sss~~~D~tIklWdi~--tG~~--L~tl~~~---------------~~~~~~V~f~~-------~~~~~lls~-s~D~tI 302 (485)
+... .+.|..++.. +|+. ..++.+. ...-..++|.. ..++.|.++ ...+.|
T Consensus 290 ad~~--~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 290 IYNG--KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp EETT--TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred EeCC--CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 6443 3688887754 4532 1233332 11233577731 234566666 578999
Q ss_pred EEEECCCCeeEEecc-----------------cCCCceEEEEEc-CCCcEEEEEe-CCcEEEEeC
Q 011452 303 QILDVRNFELTEVSR-----------------TEFMTPSAFIFL-YENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 303 kIWDv~tg~~~~~l~-----------------gh~~~v~avaFs-pdg~llaS~s-D~TIklWd~ 348 (485)
+.+|. +|+...... .....+..+++. ++|.++++-. ++.|+..++
T Consensus 368 ~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 431 (433)
T 4hw6_A 368 RVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP 431 (433)
T ss_dssp EEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred EEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence 99996 576544331 124569999999 8999999888 888887765
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.24 E-value=0.00033 Score=70.52 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=86.0
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEc-----CCcEEEEEEcCC----ceEEEEEcCCCC---e
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS-----DKNVQEIKISPG----IMLLIFTKASGH---V 257 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~-----~~~V~~VafSpg----~~ll~sss~~~D---~ 257 (485)
+..|..++|+ |||+++++. .++.|++++ +++. +..+. ......|+|+|+ +.+.++.....+ .
T Consensus 30 l~~P~~ia~~-pdG~l~V~e-~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFL-PDGGMLIAE-RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEEC-TTSCEEEEE-TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEc-CCCeEEEEe-CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 5678899997 799988875 469999998 5552 23332 246889999997 666665443222 5
Q ss_pred eEEEEecCCCe-----E-EEEee---cCCcceeEEEEEecCCCEEEEE-eCC-------------CcEEEEECCCC----
Q 011452 258 PLKILSIEDGT-----V-LKSFN---HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNF---- 310 (485)
Q Consensus 258 tIklWdi~tG~-----~-L~tl~---~~~~~~~~V~f~~~~~~~lls~-s~D-------------~tIkIWDv~tg---- 310 (485)
.|..++...++ . +..+. +..|.-..++|. |++ .|.++ ++. +.|.-+|....
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~-pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG-PDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC-TTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC-CCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 67777776542 2 22244 222344689986 566 55554 321 34555555430
Q ss_pred ---------eeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 311 ---------ELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 311 ---------~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
.......|| ..++.++|.| +|+++++-.
T Consensus 184 npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~ 221 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEH 221 (352)
T ss_dssp CTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEE
T ss_pred CcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEc
Confidence 111112233 2478899999 888888766
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.0059 Score=66.50 Aligned_cols=287 Identities=9% Similarity=0.051 Sum_probs=167.7
Q ss_pred ceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 97 KIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 97 ~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
....|++. +.+.++-+..+.|...+.+ |....++-...-..-+.|++.|.+..|..+- .+ .. ..|..-
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD-~g-~~------~~I~r~ 155 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLFWQELDQPRAIALDPSSGFMYWTD-WG-EV------PKIERA 155 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCCCCEEEETTTTEEEEEE-CS-SS------CEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEEeCCCCCCceEEEecCCCeEEEec-cC-CC------CEEEEE
Confidence 45678886 5566677778999999987 6655555432334568999999766554422 12 11 122222
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFT 251 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~ss 251 (485)
+ ..|... ..+.. ..+.+|..+++|+.++++..+-+..+.|...|+........+. ...-.+|++..+ .+..+.
T Consensus 156 ~-~dG~~~--~~l~~-~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td 230 (619)
T 3s94_A 156 G-MDGSSR--FIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTD 230 (619)
T ss_dssp E-TTSCSC--EEEEC-SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEEC
T ss_pred E-CCCCce--EEEEe-CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEec
Confidence 3 355431 12332 3578899999996678888888888899999986543222222 122346777666 554443
Q ss_pred cCCCCeeEEEEecCCCeEEEEeecCCcceeEEEE-------------------------Eec----------CC------
Q 011452 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF-------------------------IEQ----------FN------ 290 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f-------------------------~~~----------~~------ 290 (485)
. ....|..-|..+|+.+..+......-..|++ ..| .+
T Consensus 231 ~--~~~~V~~~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d 308 (619)
T 3s94_A 231 W--STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLEN 308 (619)
T ss_dssp T--TTCSEEEEESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTT
T ss_pred C--CCCEEEEEECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheeccc
Confidence 3 3478888898888876655432211122222 111 10
Q ss_pred --------C-EEEEEeCCCcEEEEECCCCeeE--EecccCCCceEEEEEcC-CCcEEEEEe-CCcEEEEeCCCcEEEEee
Q 011452 291 --------E-KLLVKQENENLQILDVRNFELT--EVSRTEFMTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFE 357 (485)
Q Consensus 291 --------~-~lls~s~D~tIkIWDv~tg~~~--~~l~gh~~~v~avaFsp-dg~llaS~s-D~TIklWd~~G~ll~tl~ 357 (485)
+ .|+.+ ..+.|+..++.+.+.. .........+.+++|.+ ++.++.+-. .+.|.-++.+|....++-
T Consensus 309 ~~~C~~~~~~~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~ 387 (619)
T 3s94_A 309 GKTCKDGATELLLLA-RRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVV 387 (619)
T ss_dssp SSCBCSSCSEEEEEE-ESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred CcccCCCCceEEEEE-cccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEE
Confidence 1 23333 2356777787765421 11112345688999988 677777777 899999999865433433
Q ss_pred cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 358 DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 358 gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
..... ...++|+.+.+..|.-+.. ..++|.+-++. |+...+|.
T Consensus 388 ~~~~~----~p~GlAvD~~~~~lY~tD~----------~~~~I~v~~~~-G~~~~~l~ 430 (619)
T 3s94_A 388 TAQIA----HPDGIAVDWVARNLYWTDT----------GTDRIEVTRLN-GTMRKILI 430 (619)
T ss_dssp CSSCS----CCCEEEEETTTTEEEEEET----------TTTEEEEEETT-SCSCEEEE
T ss_pred ECCCC----CcCceEEecccCcEEEEeC----------CCCcEEEEeCC-CCeEEEEE
Confidence 22211 1578999975554444332 25889999876 55444554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0012 Score=65.84 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=144.0
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEcCCcEEEEEEcC-
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISDKNVQEIKISP- 243 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~~~~V~~VafSp- 243 (485)
+.|+..++..+.... ..+.. .+..+..|+|++.+|.+..+....+.|..+++.++.. +..-.-.....+++.+
T Consensus 13 ~~I~~i~l~~~~~~~-~~~~~--~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 13 RDLRLVDATNGKENA-TIVVG--GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEETTCTTSCC-EEEEE--EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred CeEEEEECCCCceEE-EEEec--CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 456666653332111 12222 2345568999866788888888889999999886632 1111123567899996
Q ss_pred CceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCC
Q 011452 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~ 320 (485)
++.+..+... ...|.+.++. |+..+++. .....-..|++. |.++.|..+. ..+.|...++.............
T Consensus 90 ~g~ly~~d~~--~~~I~~~~~d-G~~~~~l~~~~~~~P~giavd-p~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l 165 (318)
T 3sov_A 90 GEKLYWTDSE--TNRIEVSNLD-GSLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEI 165 (318)
T ss_dssp TTEEEEEETT--TTEEEEEETT-SCSCEEEECSSCSSEEEEEEE-GGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCeEEEEECC--CCEEEEEECC-CCcEEEEEeCCCCCccEEEEe-CCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence 7777666443 3689999985 44444442 333455688876 4567777764 46788888887443333333456
Q ss_pred CceEEEEEcC-CCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCC
Q 011452 321 MTPSAFIFLY-ENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAG 398 (485)
Q Consensus 321 ~~v~avaFsp-dg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dg 398 (485)
..++.++|+| ++++..+-+ .+.|...|++|.-.+++-.....+ -.+|++..+ .+..+ .. ..+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~----P~glav~~~-~lywt-d~----------~~~ 229 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH----PFALTLFED-ILYWT-DW----------STH 229 (318)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSC----EEEEEEETT-EEEEE-ET----------TTT
T ss_pred CCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCC----ceEEEEeCC-EEEEE-ec----------CCC
Confidence 6899999998 555666666 889999999876555443212222 457777533 44444 32 258
Q ss_pred eEEEEeCCCCeEEEEecC
Q 011452 399 SINISNILTGKCLAKIRA 416 (485)
Q Consensus 399 tIklWdl~TGk~l~tl~g 416 (485)
.|...|..+|+.+.++..
T Consensus 230 ~V~~~~~~~G~~~~~i~~ 247 (318)
T 3sov_A 230 SILACNKYTGEGLREIHS 247 (318)
T ss_dssp EEEEEETTTCCSCEEEEC
T ss_pred eEEEEECCCCCceEEEeC
Confidence 999999989987777754
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.001 Score=71.23 Aligned_cols=248 Identities=13% Similarity=0.032 Sum_probs=146.1
Q ss_pred EEEEEe----cCEEEEEeCCCeEEeeecccCcEEEEeecCC---cccEEEEEE-------eeCCCEEEEEEeecCCCCcc
Q 011452 99 IEIVAA----RDIVFALAQSGVCAAFCRETNQRICFLNVTA---DEVIRSLFY-------NKNNDSLITVSVYASDNFSS 164 (485)
Q Consensus 99 ~~i~~s----~~~ias~s~dgtiklW~~~tG~~l~tl~g~~---~~~i~sv~~-------spdg~~Las~S~d~~~d~st 164 (485)
.-++|. +.++++--..+.+++.|.++++.. ++.... -+..+.|+| +++|++|+.+...+.. .
T Consensus 142 ~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~-~-- 217 (496)
T 3kya_A 142 GRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK-G-- 217 (496)
T ss_dssp EEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT-G--
T ss_pred CEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC-c--
Confidence 355565 334444444577888898855544 443321 235899999 9999977665432211 0
Q ss_pred cceeEEEEeEecc-CCcCc-c-cceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecC-------CCeE-------
Q 011452 165 LRCRSTRIEYIRR-GKPDA-G-FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-------NYTM------- 227 (485)
Q Consensus 165 L~~~t~~lw~i~~-G~~~~-~-~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-------~g~~------- 227 (485)
...+.+-+.+... |++.. . ...+. ...++..+++++.+|.++++...++.|..+|++ +++.
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred ccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 0112233333222 34421 0 01233 246788999985478888888889999999997 5553
Q ss_pred -------EEEEcC-CcEEEEEEcCCce-EEEEEcCCCCeeEEEEe--cCCCeEE--EEeecCC---------------cc
Q 011452 228 -------LYSISD-KNVQEIKISPGIM-LLIFTKASGHVPLKILS--IEDGTVL--KSFNHLL---------------HR 279 (485)
Q Consensus 228 -------l~tl~~-~~V~~VafSpg~~-ll~sss~~~D~tIklWd--i~tG~~L--~tl~~~~---------------~~ 279 (485)
++++.. .+-..|+|+|++. +.++... .+.|+.++ ..+++.. .++.|.. ..
T Consensus 296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~--~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN--NHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT--TTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred cccccceeEecCCCCCceEEEEcCCCCEEEEEeCC--CCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 344443 3457899998665 5565433 36788754 4455431 3444321 11
Q ss_pred eeEEEEEe-c-----CCCEEEEE-eCCCcEEEEECCCCeeEEeccc------------------------CCCceEEEEE
Q 011452 280 NKKVDFIE-Q-----FNEKLLVK-QENENLQILDVRNFELTEVSRT------------------------EFMTPSAFIF 328 (485)
Q Consensus 280 ~~~V~f~~-~-----~~~~lls~-s~D~tIkIWDv~tg~~~~~l~g------------------------h~~~v~avaF 328 (485)
-....+.. + .++.|.++ ..++.||.++ .+|... ++.| .+..+..|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 12133432 1 24466666 6889999999 457543 3322 2457999999
Q ss_pred cCC-CcEEEEEe-CCcEEEEeCCCc-EEEEe
Q 011452 329 LYE-NQLFLTFR-NRTVAVWNFRGE-LVTSF 356 (485)
Q Consensus 329 spd-g~llaS~s-D~TIklWd~~G~-ll~tl 356 (485)
.++ |.++++-+ ++.|+..+++++ ++.-.
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~~~~~~~ 482 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQEENVAGD 482 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCCC-----
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCCcccccC
Confidence 997 99999888 899999998754 44433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00034 Score=74.91 Aligned_cols=262 Identities=11% Similarity=0.113 Sum_probs=152.4
Q ss_pred cccCceEEEEeCC-CCeEEEEeeCCCcEEEeecCCCeEEEEEcC-----CcEEEEEE-------cCCc-eEEEEEcCCC-
Q 011452 191 SLKWPGFVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKI-------SPGI-MLLIFTKASG- 255 (485)
Q Consensus 191 ~~~~~~~V~Fs~p-nG~~Las~s~D~tiKlWdl~~g~~l~tl~~-----~~V~~Vaf-------Spg~-~ll~sss~~~- 255 (485)
.+..|..++|+|. ++.+.++.-..+.|++.|++++.....+.. .....|+| ++++ +++++...+.
T Consensus 137 ~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~ 216 (496)
T 3kya_A 137 GFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGK 216 (496)
T ss_dssp CCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTT
T ss_pred ccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCC
Confidence 3567889999841 466666655557788999888776544432 25899999 9754 4665543321
Q ss_pred ---CeeEEEEecCC-Ce--------EEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECC-------CCee---
Q 011452 256 ---HVPLKILSIED-GT--------VLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVR-------NFEL--- 312 (485)
Q Consensus 256 ---D~tIklWdi~t-G~--------~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~-------tg~~--- 312 (485)
...|.+.+... |+ .+..+. +-..+++. |+++.|.++ ..++.|..+|+. +++.
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~----~p~giavd-p~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp 291 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAYK----QCNGATIH-PINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDP 291 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEES----CCCCEEEC-TTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCC
T ss_pred cccCceEEEEecCCCCceeecccceeeccCC----CceEEEEc-CCCCeEEEEECCCCEEEEEecccccccccCceeecc
Confidence 23355665433 23 333332 33466664 656777765 588899999998 6654
Q ss_pred --------EEe--cccCCCceEEEEEcCCCc-EEEEEe-CCcEEEEeCCCc--EE---EEeecC---CCCCCC-------
Q 011452 313 --------TEV--SRTEFMTPSAFIFLYENQ-LFLTFR-NRTVAVWNFRGE--LV---TSFEDH---LLWHPD------- 365 (485)
Q Consensus 313 --------~~~--l~gh~~~v~avaFspdg~-llaS~s-D~TIklWd~~G~--ll---~tl~gH---~~~~~~------- 365 (485)
.+. ..+...++..++|+|+|+ ++++-+ .+.|+.++.+|+ .+ .++.|. ..+...
T Consensus 292 ~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 292 IVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp BGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred cccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 111 123345789999999999 577767 889999776532 22 455543 111000
Q ss_pred CCee-EEEEC-------CCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 366 CNTN-NIYIT-------SDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 366 ~~v~-svafS-------pDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
..-. .++.. ++|.+.++=+. ...||..+ .+|+ +.++-|......+ ....+.+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~-----------N~rIr~i~-~~G~-v~TiaG~g~~~~~-~~~~~~G------ 431 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRL-----------NFCVRKVT-PEGI-VSTYAGRGASTSL-ADGNQWG------ 431 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGG-----------GTEEEEEC-TTCB-EEEEEESCTTHHH-HHSCSCC------
T ss_pred CCCeEEEEEccccccccCCCeEEEEECC-----------CCEEEEEe-CCCC-EEEEecccccccc-cCccccc------
Confidence 0123 45554 67787776443 58899999 5784 6677664210000 0000000
Q ss_pred cccccccccccccchhcccCCeEEEEEcCC-CCEEEEecCCCcEEEcc
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDED-RNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspD-g~~LaSgs~DgtVklWd 484 (485)
+.+ . ... .+.-|..-++|+++|+ |..+++=+....||..+
T Consensus 432 ~~d-----G-~~~-~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 432 TDD-----G-DLR-EVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp CCC-----E-ETT-TTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cCC-----C-Cch-hhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 000 0 000 0112346789999997 77777767777887664
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0091 Score=58.98 Aligned_cols=269 Identities=10% Similarity=0.088 Sum_probs=146.1
Q ss_pred cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeec------cccCceEEEEeCCCCeEEE
Q 011452 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE------SLKWPGFVEFDDVNGKVLT 209 (485)
Q Consensus 136 ~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~------~~~~~~~V~Fs~pnG~~La 209 (485)
...+++|+|.+++..+|. +. .. .+ +.....|+- |+.. ...+...|.|+ + +..++
T Consensus 35 ~~~~~~v~~~~~~~~~~~-G~---~g-------~i-~~s~DgG~t------W~~~~~~~~~~~~~~~~i~~~-~-~~~~~ 94 (327)
T 2xbg_A 35 TATILDMSFIDRHHGWLV-GV---NA-------TL-METRDGGQT------WEPRTLVLDHSDYRFNSVSFQ-G-NEGWI 94 (327)
T ss_dssp SSCEEEEEESSSSCEEEE-ET---TT-------EE-EEESSTTSS------CEECCCCCSCCCCEEEEEEEE-T-TEEEE
T ss_pred CCcEEEEEECCCCcEEEE-cC---CC-------eE-EEeCCCCCC------CeECCCCCCCCCccEEEEEec-C-CeEEE
Confidence 446999999988887773 32 22 22 222112321 2221 11234578997 4 56666
Q ss_pred EeeCCCcEEEeecCCCeEEEEEc-----CCcEEEEEEcCCceEEEEEcCCCCeeE-EEEecCCCeEEEEe-ecCCcceeE
Q 011452 210 YSAQDSIYKVFDLKNYTMLYSIS-----DKNVQEIKISPGIMLLIFTKASGHVPL-KILSIEDGTVLKSF-NHLLHRNKK 282 (485)
Q Consensus 210 s~s~D~tiKlWdl~~g~~l~tl~-----~~~V~~VafSpg~~ll~sss~~~D~tI-klWdi~tG~~L~tl-~~~~~~~~~ 282 (485)
.+ .++.|.. .-..|+--..+. ...+..|++.+++.+++.... +.| +-+| .|+--... ..+...+..
T Consensus 95 ~g-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---g~v~~S~D--gG~tW~~~~~~~~~~~~~ 167 (327)
T 2xbg_A 95 VG-EPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV---GAIYRTKD--SGKNWQALVQEAIGVMRN 167 (327)
T ss_dssp EE-ETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT---CCEEEESS--TTSSEEEEECSCCCCEEE
T ss_pred EE-CCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC---ccEEEEcC--CCCCCEEeecCCCcceEE
Confidence 54 4554433 222343111111 135788888754454444322 333 3333 34432222 233456678
Q ss_pred EEEEecCCCEEEEEeCCCcEEEEEC--CCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecC
Q 011452 283 VDFIEQFNEKLLVKQENENLQILDV--RNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDH 359 (485)
Q Consensus 283 V~f~~~~~~~lls~s~D~tIkIWDv--~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH 359 (485)
++|. +++..++++......+-+|- .+-+.+. .++...+.++++.|++++++.+.++.+.+++.+ |+--+.+..-
T Consensus 168 ~~~~-~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW~~~~~~ 244 (327)
T 2xbg_A 168 LNRS-PSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGELLSP 244 (327)
T ss_dssp EEEC-TTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEECCCBCT
T ss_pred EEEc-CCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCeeEeccCC
Confidence 8886 44544444445555565663 3334432 244567889999999998887778988888655 6544333211
Q ss_pred CCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccc
Q 011452 360 LLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNV 439 (485)
Q Consensus 360 ~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~ 439 (485)
..... ..+.+|++.|++++++.+. +++| ++....|+--..+......
T Consensus 245 ~~~~~-~~~~~v~~~~~~~~~~~g~------------~g~i-~~S~DgG~tW~~~~~~~~~------------------- 291 (327)
T 2xbg_A 245 LRRNS-VGFLDLAYRTPNEVWLAGG------------AGAL-LCSQDGGQTWQQDVDVKKV------------------- 291 (327)
T ss_dssp TSSCC-SCEEEEEESSSSCEEEEES------------TTCE-EEESSTTSSCEECGGGTTS-------------------
T ss_pred cccCC-cceEEEEecCCCEEEEEeC------------CCeE-EEeCCCCcccEEcCccCCC-------------------
Confidence 00110 1278999999999998875 4777 3444445544444321100
Q ss_pred cccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 440 KKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 440 ~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
-..+++|.|.++++ ++.++.+|+|.-++
T Consensus 292 ----------------~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 292 ----------------PSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp ----------------SSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ----------------CCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 01567888986655 56666789886553
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0052 Score=61.13 Aligned_cols=227 Identities=11% Similarity=0.042 Sum_probs=145.8
Q ss_pred CCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeecc
Q 011452 114 SGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (485)
Q Consensus 114 dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~ 191 (485)
...|+..+++++. ....+.+ -.....|+|.+.++.|.-+- ... +.|..+++..+.. . ..++.. .
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~--~~~~~~ld~d~~~~~lyw~D--~~~-------~~I~r~~~~g~~~-~-~~~~~~-~ 77 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGG--LEDAAAVDFVFSHGLIYWSD--VSE-------EAIKRTEFNKTES-V-QNVVVS-G 77 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEE--EEEEEEEEEEGGGTEEEEEE--TTT-------TEEEEEETTSSSC-C-CEEEEE-C
T ss_pred cCeEEEEECCCCceEEEEEecC--CCccEEEEEEeCCCEEEEEE--CCC-------CcEEEEEccCCCc-e-EEEEcC-C
Confidence 4567777877542 1111222 23467899999777665522 222 3565566433321 0 123332 3
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCC
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG 267 (485)
+..|..+++++.+|.+..+.+..+.|.+.+++... ...+ . ...-..|++.| ++.+..+... ....|...+. +|
T Consensus 78 l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~~~~~~P~giavdp~~g~ly~td~~-~~~~I~r~~~-dG 154 (318)
T 3sov_A 78 LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWG-EVPKIERAGM-DG 154 (318)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSSEEEEEEEGGGTEEEEEECS-SSCEEEEEET-TS
T ss_pred CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEeCCCCCccEEEEeCCCCEEEEEecC-CCCEEEEEEc-CC
Confidence 56788999986688888888888999999986433 2233 2 24678999997 5666665422 2356777776 56
Q ss_pred eEEEEee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 268 TVLKSFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 268 ~~L~tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+...++- .....-..++|. +++++|..+ +..+.|...|+..........+....+.++++. ++.++.+-. .+.|.
T Consensus 155 ~~~~~~~~~~l~~Pnglavd-~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~ 232 (318)
T 3sov_A 155 SSRFIIINSEIYWPNGLTLD-YEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSIL 232 (318)
T ss_dssp CSCEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCeEEEEECCCCCccEEEEe-ccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEE
Confidence 5555442 223344688986 567888777 578999999998544444444456788999885 567777877 88999
Q ss_pred EEeC-CCcEEEEeecC
Q 011452 345 VWNF-RGELVTSFEDH 359 (485)
Q Consensus 345 lWd~-~G~ll~tl~gH 359 (485)
..|. +|+.++.+...
T Consensus 233 ~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 233 ACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEETTTCCSCEEEECC
T ss_pred EEECCCCCceEEEeCC
Confidence 9998 58877776543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0018 Score=66.55 Aligned_cols=190 Identities=15% Similarity=0.188 Sum_probs=124.8
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCce-------EEEEEcCCC--CeeEEEEec--CCCeEEEEeecC
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIM-------LLIFTKASG--HVPLKILSI--EDGTVLKSFNHL 276 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~-------ll~sss~~~--D~tIklWdi--~tG~~L~tl~~~ 276 (485)
+.....++-+.|+|+ +|+.+..+....++.|..-|+-. ++.. +... +++|.|+++ .+++ |+.+..-
T Consensus 43 ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~a-s~R~~~~n~l~vf~iDp~~~~-l~~i~~~ 119 (355)
T 3amr_A 43 LITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAA-SNRSEGKNTIEIYAIDGKNGT-LQSMTDP 119 (355)
T ss_dssp EEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEE-EECSTTCCEEEEEEECTTTCC-EEECSCT
T ss_pred EEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEE-eCCCCCCCeEEEEEECCCCCc-eeecccc
Confidence 333445678999999 89999999877777777777432 3333 3333 589999966 5665 6666321
Q ss_pred -------CcceeEEEEE-ecCCC--EEEEEeCCCcEEEEEC-------CCCeeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 277 -------LHRNKKVDFI-EQFNE--KLLVKQENENLQILDV-------RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 277 -------~~~~~~V~f~-~~~~~--~lls~s~D~tIkIWDv-------~tg~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
......+++- .+..+ ++.+...++.+..|++ .++++++.+.- ...+..++..++...|.-+-
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~e 198 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAE 198 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEec
Confidence 1334456662 24333 4666778899999988 23466666643 34788888888777666666
Q ss_pred -CCcEEEEeCC------CcEEEEee-cCCCCCCCCCeeEEEE--CCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCC-C
Q 011452 340 -NRTVAVWNFR------GELVTSFE-DHLLWHPDCNTNNIYI--TSDQD-LIISYCKADSDDPLAEGNAGSINISNIL-T 407 (485)
Q Consensus 340 -D~TIklWd~~------G~ll~tl~-gH~~~~~~~~v~svaf--SpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~-T 407 (485)
|.-|-.++.+ ++++..+. +|... + +..|++ .+||+ ||+.+|.. +++.-++|.+ +
T Consensus 199 Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~a--D--vEGLai~~~~~g~gyLivSsQG----------~~s~~Vydr~~~ 264 (355)
T 3amr_A 199 EDEAIWKFSAEPDGGSNGTVIDRADGRHLTR--D--IEGLTIYYAADGKGYLMASSQG----------NSSYAIYDRQGK 264 (355)
T ss_dssp TTTEEEEEECSTTSCSCCEEEEEBSSSSBCS--C--EEEEEEEECGGGCEEEEEEEGG----------GTEEEEEESSTT
T ss_pred ccceEEEEeCCcCCCCCceEEEEecCCcccc--C--cceEEEEecCCCCEEEEEEcCC----------CCEEEEEECCCC
Confidence 7544333433 34666553 33322 1 677887 77877 77777752 5899999996 7
Q ss_pred CeEEEEec
Q 011452 408 GKCLAKIR 415 (485)
Q Consensus 408 Gk~l~tl~ 415 (485)
.+.+..|.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 88888885
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0036 Score=70.46 Aligned_cols=206 Identities=8% Similarity=0.030 Sum_probs=136.4
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCC----eEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEec
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g----~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi 264 (485)
+..+..|+|+..++.+..+....+.|+.+++... .....+. -.....||+.+ ++.|..+... .+.|.+.++
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~--~~~I~v~~l 500 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT 500 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecC--CCeEEEEeC
Confidence 5667789998668888888888899999998753 2122222 24577899996 6677776543 379999998
Q ss_pred CCCeEEEEee-cCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-
Q 011452 265 EDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR- 339 (485)
Q Consensus 265 ~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s- 339 (485)
. |+..+++- ..+..-..|++. |.++.|..+- ....|...++..............+++.+++.|. ++++++-.
T Consensus 501 d-G~~~~~l~~~~l~~P~gIaVD-p~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 501 K-GVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp T-SSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred C-CCeEEEEEeCCCCCcceEEEe-cCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 5 55555553 334556788886 5567777764 3378999999855554445555679999999965 55566655
Q ss_pred CCcEEEEeCCCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 340 NRTVAVWNFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 340 D~TIklWd~~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
...|...|++|..++++ .++..+ ..-.+|++ +++.|.-+.. ..++|..-|..+|+-+.+|..
T Consensus 579 ~~~I~~~d~dG~~~~~v~~~~~~l---~~P~glav--~~~~lYwtD~----------~~~~I~~~dk~tG~~~~~l~~ 641 (791)
T 3m0c_C 579 LHSISSIDVNGGNRKTILEDEKRL---AHPFSLAV--FEDKVFWTDI----------INEAIFSANRLTGSDVNLLAE 641 (791)
T ss_dssp TTEEEEEETTSCSCEEEEECTTTT---SSEEEEEE--ETTEEEEEET----------TTTEEEEEETTTCCCCEEEEC
T ss_pred CCcEEEEecCCCceEEEecCCCcc---CCCCEEEE--eCCEEEEEEC----------CCCEEEEEeCCCCcceEEeec
Confidence 78999999987655444 332222 01346666 4445544432 258888888889988777754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.018 Score=64.83 Aligned_cols=228 Identities=11% Similarity=0.085 Sum_probs=144.7
Q ss_pred CCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcC--cccceeeecc
Q 011452 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD--AGFALFESES 191 (485)
Q Consensus 114 dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~--~~~~lf~~~~ 191 (485)
...|+..++..++... +.. ....+..|+|.+.++.|..+. ... +.|...++. |... ....++. ..
T Consensus 403 ~~~Ir~i~l~~~~~~~-l~~-~~~~~~gl~~d~~~~~lY~sD--~~~-------~~I~~~~l~-g~~~~~~~~~vi~-~~ 469 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTS-LIP-NLRNVVALDTEVASNRIYWSD--LSQ-------RMICSTQLD-RAHGVSSYDTVIS-RD 469 (791)
T ss_dssp BSSEEEECTTSCCCEE-EEC-SCSSEEEEEEETTTTEEEEEE--TTT-------TEEEEEEC---------CEEEEC-SS
T ss_pred ccceeEeeccCCccee-eec-CCCceEEEeecccCCeeEEee--ccc-------eeEEEEecc-CCCCCcceeEEEe-cC
Confidence 3456666666444333 322 234578999999777665532 222 355555643 3110 0122333 24
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE-c--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCC
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl-~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG 267 (485)
+..|..|+++...+.+..+.+..+.|.+.++.... ..++ . ......||+.| ++.|..+... ....|...++ +|
T Consensus 470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g-~~~~I~~~~~-dG 546 (791)
T 3m0c_C 470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGL-NG 546 (791)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEET-TS
T ss_pred CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeCCCCCcceEEEecCCCCEEEecCC-CCCeEEEEec-CC
Confidence 67788999996667888888889999999987543 3333 2 24688999997 5676666432 2257888887 56
Q ss_pred eEEEEee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEeccc--CCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 268 TVLKSFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRT--EFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 268 ~~L~tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~g--h~~~v~avaFspdg~llaS~s-D~T 342 (485)
...+++- ..+.+-..|++. +.+++|..+ ...+.|...|+.......++.+ ....+.++++ .+++++++-. .+.
T Consensus 547 ~~~~~lv~~~l~~P~GLavD-~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav-~~~~lYwtD~~~~~ 624 (791)
T 3m0c_C 547 VDIYSLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEA 624 (791)
T ss_dssp CCEEEEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE-ETTEEEEEETTTTE
T ss_pred CceEEEEeCCCCCceEEEEe-cCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE-eCCEEEEEECCCCE
Confidence 6555553 333456688885 557788777 5778999999986554444433 3456778877 4557888877 889
Q ss_pred EEEEeC-CCcEEEEeecC
Q 011452 343 VAVWNF-RGELVTSFEDH 359 (485)
Q Consensus 343 IklWd~-~G~ll~tl~gH 359 (485)
|..-|. +|+.+.++...
T Consensus 625 I~~~dk~tG~~~~~l~~~ 642 (791)
T 3m0c_C 625 IFSANRLTGSDVNLLAEN 642 (791)
T ss_dssp EEEEETTTCCCCEEEECS
T ss_pred EEEEeCCCCcceEEeecC
Confidence 988886 58776666543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0088 Score=60.35 Aligned_cols=142 Identities=10% Similarity=0.100 Sum_probs=85.3
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe-EEEEEc-----CCcEEEEEEcCC----ceEEEEEcC-CCC----
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-----DKNVQEIKISPG----IMLLIFTKA-SGH---- 256 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~-~l~tl~-----~~~V~~VafSpg----~~ll~sss~-~~D---- 256 (485)
+.+|..++|+ |||+++++.. ++.|+++| .+|+ .+..+. ......|+|+|+ +.+.++.+. ..+
T Consensus 28 l~~P~~ia~~-pdG~l~V~e~-~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPL-GGGRYLVTER-PGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEE-ETTEEEEEET-TTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEc-CCCeEEEEeC-CCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 5678899998 7999888754 58898888 4665 333322 246899999986 677665432 122
Q ss_pred eeEEEEecCCC-------eEE-EEee-cCCcceeEEEEEecCCCEEEEE-eCC-------------CcEEEEECCCC---
Q 011452 257 VPLKILSIEDG-------TVL-KSFN-HLLHRNKKVDFIEQFNEKLLVK-QEN-------------ENLQILDVRNF--- 310 (485)
Q Consensus 257 ~tIklWdi~tG-------~~L-~tl~-~~~~~~~~V~f~~~~~~~lls~-s~D-------------~tIkIWDv~tg--- 310 (485)
..|-.++...+ +.+ ..+. +..|.-..++|. |++ +|.++ +.. +.|.-.|....
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~-pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~ 182 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFG-PDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPA 182 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEEC-TTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEEC-CCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCC
Confidence 45666776554 122 2243 222344679986 556 45554 321 34444455422
Q ss_pred -----eeEEecccCCCceEEEEEcC-CCcEEEEEe
Q 011452 311 -----ELTEVSRTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 311 -----~~~~~l~gh~~~v~avaFsp-dg~llaS~s 339 (485)
.......||. .++.++|.| +|+++++-.
T Consensus 183 ~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 183 DNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEH 216 (354)
T ss_dssp TSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEEC
T ss_pred CCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEec
Confidence 0111122443 577899999 899888765
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.031 Score=60.95 Aligned_cols=227 Identities=12% Similarity=0.120 Sum_probs=149.0
Q ss_pred CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccc
Q 011452 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL 192 (485)
Q Consensus 113 ~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~ 192 (485)
..+.|+.-++++.+....+....-.....|+|.+.++.|.-+. ... +.|...++ .|... ..++.. .+
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD--~~~-------~~I~r~~~-~g~~~--~~v~~~-g~ 79 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTD--ISL-------KTISRAFM-NGSAL--EHVVEF-GL 79 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEE--TTT-------TEEEEEET-TSCSC--EEEECS-SC
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEE--CCC-------CeEEEEEC-CCCCc--EEEEeC-CC
Confidence 4566777777755433333322223578999999888776533 222 35555554 44321 123333 34
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--c-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCe
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGT 268 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~ 268 (485)
..|..+++|..+|++..+....+.|.+-+++.... .++ . -..-..|++.| ++.+..+... ....|...++ +|.
T Consensus 80 ~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g-~~~~I~r~~~-dG~ 156 (628)
T 4a0p_A 80 DYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAM-DGS 156 (628)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCCEEEEEEETTTTEEEEEECS-SSCEEEEEET-TSC
T ss_pred CCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCC-CCCEEEEEeC-CCC
Confidence 57889999977788888888889999999865432 222 1 24678999998 6777666432 1256777776 455
Q ss_pred EEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
....+-....+-..|++. +++++|..+ ...+.|...|+..+.. +++......+.++++.. +.++.|-. .+.|..-
T Consensus 157 ~~~~l~~~~~~P~GlalD-~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 157 ERTTLVPNVGRANGLTID-YAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA 233 (628)
T ss_dssp SCEEEECSCSSEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred ceEEEECCCCCcceEEEc-cccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence 555544334555688886 567888887 5788999999986544 55555666788998864 78888888 8999999
Q ss_pred eC-CCcEEEEeec
Q 011452 347 NF-RGELVTSFED 358 (485)
Q Consensus 347 d~-~G~ll~tl~g 358 (485)
|. +|+..+.+..
T Consensus 234 dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 234 NKTSGQNRTIIQG 246 (628)
T ss_dssp ETTTCCSCEEEEC
T ss_pred ECCCCCceEEEec
Confidence 96 5775555543
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=0.02 Score=62.50 Aligned_cols=177 Identities=10% Similarity=0.058 Sum_probs=122.1
Q ss_pred CCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec
Q 011452 213 QDSIYKVFDLKNYTMLYSIS--D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ 288 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~--~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~ 288 (485)
....|+.-|+++......+. + ..+..|+|.+ ++.+..+.. ..+.|..+++..+.....+..-......+++. +
T Consensus 13 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~--~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD-~ 89 (628)
T 4a0p_A 13 RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI--SLKTISRAFMNGSALEHVVEFGLDYPEGMAVD-W 89 (628)
T ss_dssp ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET--TTTEEEEEETTSCSCEEEECSSCSCCCEEEEE-T
T ss_pred eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC--CCCeEEEEECCCCCcEEEEeCCCCCcceEEEE-e
Confidence 45678888888655433333 3 4788999997 677666643 34789999986544433343223445677774 4
Q ss_pred CCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcC-CCcEEEEEe--CCcEEEEeCCCcEEEEeecCCCCCC
Q 011452 289 FNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLY-ENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHP 364 (485)
Q Consensus 289 ~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp-dg~llaS~s--D~TIklWd~~G~ll~tl~gH~~~~~ 364 (485)
.++.|..+ ...+.|.+-|+...............+.++++.| +|.++.|-. ...|...+++|.....+-....+
T Consensus 90 ~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~-- 167 (628)
T 4a0p_A 90 LGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGR-- 167 (628)
T ss_dssp TTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSS--
T ss_pred CCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCC--
Confidence 46777776 5788999999985543333335667899999998 688888764 56788888887766665544445
Q ss_pred CCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 365 DCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 365 ~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
-+.|+++++++.|.-+.. ..+.|...|+..
T Consensus 168 ---P~GlalD~~~~~LY~aD~----------~~~~I~~~d~dG 197 (628)
T 4a0p_A 168 ---ANGLTIDYAKRRLYWTDL----------DTNLIESSNMLG 197 (628)
T ss_dssp ---EEEEEEETTTTEEEEEET----------TTTEEEEEETTS
T ss_pred ---cceEEEccccCEEEEEEC----------CCCEEEEEcCCC
Confidence 689999998887776643 257899999764
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00013 Score=80.65 Aligned_cols=205 Identities=8% Similarity=0.054 Sum_probs=129.8
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCC----CeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEec
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN----YTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~----g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi 264 (485)
+..+..|+|++.++.+..+....+.|+.+++.+ ......+.. .....||+.+ ++.|..+.. ..+.|.+.++
T Consensus 405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~--~~~~I~v~d~ 482 (699)
T 1n7d_A 405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDS--VLGTVSVADT 482 (699)
T ss_dssp CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCT--TTSCEEEEBS
T ss_pred CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEec--cCCeEEEEec
Confidence 455678999855677777767788999999875 122122211 2456789984 666665532 3478999998
Q ss_pred CCCeEEEEe-ecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-
Q 011452 265 EDGTVLKSF-NHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR- 339 (485)
Q Consensus 265 ~tG~~L~tl-~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s- 339 (485)
.. ..++++ ......-..|++. |.++.|..+. ..+.|...++...............++.++|+|+ ++++++-+
T Consensus 483 dg-~~~~~l~~~~~~~P~giavD-p~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~ 560 (699)
T 1n7d_A 483 KG-VKRKTLFREQGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSK 560 (699)
T ss_dssp SS-CCEEEECCCSSCCCCCEECC-SSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETT
T ss_pred CC-CceEEEEeCCCCCcceEEEc-cCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecC
Confidence 54 444444 3223444577764 5566676654 2378888888744333333344568999999986 56666666
Q ss_pred CCcEEEEeCCCcEEEEeec--CCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 340 NRTVAVWNFRGELVTSFED--HLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 340 D~TIklWd~~G~ll~tl~g--H~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
.++|...|++|.-.+++.. ....+| .+|++..+ .++++... .+.|...|..+|+.+.+|..
T Consensus 561 ~~~I~~~d~dG~~~~~~~~~~~~~~~P----~glavd~~-~lywtd~~-----------~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 561 LHSISSIDVNGGNRKTILEDEKRLAHP----FSLAVFED-KVFWTDII-----------NEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECSSSSCCEEECCCSSSCSSC----CCCEEETT-EEEEECST-----------TTCEEEEETTTEEEEECCCT
T ss_pred CCeEEEEccCCCceEEEEecCCcCCCc----eEeEEECC-EEEEEeCC-----------CCeEEEEEccCCCceEEeec
Confidence 8899999998765444432 112222 35566444 34444322 58999999999999988854
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0072 Score=65.87 Aligned_cols=205 Identities=14% Similarity=0.112 Sum_probs=132.1
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE-EEEEc-C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCC
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSIS-D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~-l~tl~-~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG 267 (485)
+..+..|+|++.+|.+..+-...+.|..++++.... ...+. + .....+|+.+ ++.+..+... .+.|.+-++. |
T Consensus 39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~--~~~I~v~~~d-G 115 (619)
T 3s94_A 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSE--TNRIEVSNLD-G 115 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETT--TTEEEEEETT-S
T ss_pred CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCC--CCEEEEEECC-C
Confidence 556778999976888888877788999999876532 22333 2 5789999997 7777776543 3789999985 5
Q ss_pred eEEEEee-cCCcceeEEEEEecCCCEEEEEeC--CCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-CCc
Q 011452 268 TVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQE--NENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR-NRT 342 (485)
Q Consensus 268 ~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~--D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s-D~T 342 (485)
+..+++- ..+..-..|++. |.+++|..+.. ...|..-++..............+++.+++.|+ ++++.+-. .+.
T Consensus 116 ~~~~~l~~~~l~~P~~Iavd-p~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~ 194 (619)
T 3s94_A 116 SLRKVLFWQELDQPRAIALD-PSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNF 194 (619)
T ss_dssp CSCEEEECSSCSCCCCEEEE-TTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCC
T ss_pred CCEEEEEeCCCCCCceEEEe-cCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCe
Confidence 5544443 444556688886 55677777753 456666677744433333345668999999985 55556655 889
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
|...|++|.-.+.+-.....|| .+|++..| .|.-+.. ..++|..-|..||+.+..+..
T Consensus 195 I~~~~~dG~~~~~~~~~~~~~P----~gi~~~~~--~ly~td~----------~~~~V~~~d~~tg~~~~~i~~ 252 (619)
T 3s94_A 195 IHKSNLDGTNRQAVVKGSLPHP----FALTLFED--ILYWTDW----------STHSILACNKYTGEGLREIHS 252 (619)
T ss_dssp EEEESSSCCEEC---------C----CCEEESSS--EEEEECT----------TTCSEEEEESSSCCCCEECCS
T ss_pred EEEecCCCCccEEEEeCCCCCc----eEEEEeCC--EEEEecC----------CCCEEEEEECCCCcccEEEec
Confidence 9999998765554432122333 36777666 4443332 257899999888887666543
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=81.22 Aligned_cols=183 Identities=10% Similarity=0.054 Sum_probs=115.1
Q ss_pred CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCC----CeEEEEeecCCcceeEEEEE
Q 011452 213 QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED----GTVLKSFNHLLHRNKKVDFI 286 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~t----G~~L~tl~~~~~~~~~V~f~ 286 (485)
....|++-++.+.+....+. ...+..|+|++ +++|..+.. ....|+.+++.+ ......+.........|++.
T Consensus 384 ~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~--~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD 461 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--SQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 461 (699)
T ss_dssp CTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT--TTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECC
T ss_pred CccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec--CCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEE
Confidence 45678888888766544443 24677899997 667665532 336888888865 12222221112233456653
Q ss_pred ecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCC-CcEEEEEe-C-CcEEEEeCCCcEEEEeecC-CC
Q 011452 287 EQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYE-NQLFLTFR-N-RTVAVWNFRGELVTSFEDH-LL 361 (485)
Q Consensus 287 ~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspd-g~llaS~s-D-~TIklWd~~G~ll~tl~gH-~~ 361 (485)
+.++.|..+ ...++|.+.|+........+......+..+++.|+ |.++.+-. . ++|...+++|...+.+-.. ..
T Consensus 462 -~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~ 540 (699)
T 1n7d_A 462 -WIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQ 540 (699)
T ss_dssp -CSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCS
T ss_pred -eeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCC
Confidence 335666665 57789999999866555555445567899999985 56666654 4 7888888887765555322 23
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
+ -+.|+|+|+++.|.-+.. ..+.|...|+. |.-..++
T Consensus 541 ~-----PnGlavd~~~~~LY~aD~----------~~~~I~~~d~d-G~~~~~~ 577 (699)
T 1n7d_A 541 W-----PNGITLDLLSGRLYWVDS----------KLHSISSIDVN-GGNRKTI 577 (699)
T ss_dssp S-----CCCEEECTTTCCEEEEET----------TTTEEEEECSS-SSCCEEE
T ss_pred C-----ccEEEEeccCCEEEEEec----------CCCeEEEEccC-CCceEEE
Confidence 3 568999998766655432 25789999976 4444444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.012 Score=59.14 Aligned_cols=220 Identities=10% Similarity=0.098 Sum_probs=119.7
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc--ccceeeeccccCceEEEEeCCC----CeEEEEe
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA--GFALFESESLKWPGFVEFDDVN----GKVLTYS 211 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~--~~~lf~~~~~~~~~~V~Fs~pn----G~~Las~ 211 (485)
.-+.++|.|||..+++ . . . ..|.+.+ .|+... ..+++.. ....+..|+|+ || |.+.++.
T Consensus 32 ~P~~ia~~pdG~l~V~--e-~-~-------g~I~~i~--~g~~~~~~~~~v~~~-g~~~p~gia~~-pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA--E-R-P-------GRIRLFR--EGRLSTYAELSVYHR-GESGLLGLALH-PRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEE--E-T-T-------TEEEEEE--TTEEEEEEECCCCCS-TTCSEEEEEEC-TTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEE--e-C-C-------CeEEEEE--CCCccEeecceEeec-CCCCceeEEEC-CCCCCCCEEEEEE
Confidence 3589999999997665 1 1 1 2444444 554310 0111211 23456789998 55 7776665
Q ss_pred eCC-----CcEEEeecCCCe-----EEEE-Ec-----CCcEEEEEEcCCceEEEEEcCCCC-----------eeEEEEec
Q 011452 212 AQD-----SIYKVFDLKNYT-----MLYS-IS-----DKNVQEIKISPGIMLLIFTKASGH-----------VPLKILSI 264 (485)
Q Consensus 212 s~D-----~tiKlWdl~~g~-----~l~t-l~-----~~~V~~VafSpg~~ll~sss~~~D-----------~tIklWdi 264 (485)
+.+ ..|..+++.+++ .+.+ +. .+.-..++|.|++.|.++..+..+ +.|.-.+.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~ 176 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTP 176 (352)
T ss_dssp EECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECT
T ss_pred ecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcC
Confidence 543 567778877542 2332 43 145578999998888877432211 23333343
Q ss_pred CCCe-------------EEEEee-cCCcceeEEEEEecCCCEEEEEe--CCC-------cEEEEECCCCe----------
Q 011452 265 EDGT-------------VLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ--ENE-------NLQILDVRNFE---------- 311 (485)
Q Consensus 265 ~tG~-------------~L~tl~-~~~~~~~~V~f~~~~~~~lls~s--~D~-------tIkIWDv~tg~---------- 311 (485)
+|+ ....+. +| ..-..++|. ++++.|.++. .+. .|.+. ..|.
T Consensus 177 -dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d-~~~g~l~v~d~g~~~~~~~~~dei~~i--~~G~nyGwp~~~g~ 251 (352)
T 2ism_A 177 -EGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWH-PKTGELFSSEHGPSGEQGYGHDEVNLI--VPGGNYGWPRVVGR 251 (352)
T ss_dssp -TSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEEC-TTTCCEEEEEECC------CCCEEEEE--CTTCBCCTTTCCSC
T ss_pred -CCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEE-CCCCCEEEEEcCCCCCCCCCCeEEEEe--ccCCcCCCCcccCC
Confidence 231 111111 22 234578886 4344555542 332 23332 2222
Q ss_pred --------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC--CcE-----EEEeecCCCCCCCCCeeEEEECC
Q 011452 312 --------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR--GEL-----VTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 312 --------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~--G~l-----l~tl~gH~~~~~~~~v~svafSp 375 (485)
.+..+ .+...+..++| ++|.++++.- .+.|..-+++ +.. ...+-+- + ..+.+|++.|
T Consensus 252 ~~~~~~~~p~~~~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~--~---~rp~~v~~~p 324 (352)
T 2ism_A 252 GNDPRYRDPLYFW-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG--F---GRLREVQVGP 324 (352)
T ss_dssp CCCTTSCCCSEEC-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES--S---CCEEEEEECT
T ss_pred CCCCCCcCCeEec-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc--C---CCeeEEEECC
Confidence 12222 23346788888 7899888776 7777777774 321 1222211 1 2378999999
Q ss_pred CCCEEEEEe
Q 011452 376 DQDLIISYC 384 (485)
Q Consensus 376 DG~~LaS~s 384 (485)
||.+.++..
T Consensus 325 dG~lyv~~~ 333 (352)
T 2ism_A 325 DGALYVTTS 333 (352)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 999988864
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.027 Score=55.00 Aligned_cols=186 Identities=11% Similarity=0.154 Sum_probs=117.4
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--C-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe---
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT--- 268 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~--- 268 (485)
+..++|++.++.+.|....++.|-.-|+. |+.+.++. + .....|++.+++.++++.. .+..+.+.++....
T Consensus 29 lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~~i~ 105 (255)
T 3qqz_A 29 ISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDE--RDYAIYVISLTPNSEVK 105 (255)
T ss_dssp EEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEET--TTTEEEEEEECTTCCEE
T ss_pred cceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCCeee
Confidence 45799984445566556668888888887 88888874 2 4788899998777777643 33678888765433
Q ss_pred EEEEee-cC--Cc---ceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEEec-------ccCCCceEEEEEcCCC
Q 011452 269 VLKSFN-HL--LH---RNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTEVS-------RTEFMTPSAFIFLYEN 332 (485)
Q Consensus 269 ~L~tl~-~~--~~---~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~~l-------~gh~~~v~avaFspdg 332 (485)
.+.... .+ .. ....+++. +.+++|.++.+-....||.++ ++..+..+ ..+...+.+++|.|..
T Consensus 106 ~~~~~~~~~~~~~~N~g~EGLA~d-~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~t 184 (255)
T 3qqz_A 106 ILKKIKIPLQESPTNCGFEGLAYS-RQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQK 184 (255)
T ss_dssp EEEEEECCCSSCCCSSCCEEEEEE-TTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTT
T ss_pred eeeeeccccccccccCCcceEEEe-CCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCC
Confidence 233332 11 11 12489987 557788887655566666654 12122222 1134467899998865
Q ss_pred c-EEEEEe-CCcEEEEeCCCcEEEEeecC----CCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 333 Q-LFLTFR-NRTVAVWNFRGELVTSFEDH----LLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 333 ~-llaS~s-D~TIklWd~~G~ll~tl~gH----~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
. +++.+. .+.+-..|.+|+.+..+.=. .+...-..-..|+|.|+|.+.++ |.
T Consensus 185 g~lliLS~~s~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE 242 (255)
T 3qqz_A 185 NTLLVLSHESRALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SE 242 (255)
T ss_dssp TEEEEEETTTTEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ET
T ss_pred CeEEEEECCCCeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cC
Confidence 4 444444 88999999999976654311 11100011479999999998887 43
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.021 Score=55.76 Aligned_cols=185 Identities=14% Similarity=0.162 Sum_probs=115.4
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
+.+-.|+|+|++++|.+++. .++ .+-.-|. +|+.....++ .-..-+..|++. ++|.++++.-.++.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d--~~~-------~I~~ld~-~g~v~~~i~l---~g~~D~EGIa~~-~~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTIN--KPA-------AIVEMTT-NGDLIRTIPL---DFVKDLETIEYI-GDNQFVISDERDYA 92 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEE--TTE-------EEEEEET-TCCEEEEEEC---SSCSSEEEEEEC-STTEEEEEETTTTE
T ss_pred cCcceeEEeCCCCEEEEEEC--CCC-------eEEEEeC-CCCEEEEEec---CCCCChHHeEEe-CCCEEEEEECCCCc
Confidence 35999999999999988774 232 3434454 4776332221 112345679997 78888777656788
Q ss_pred EEEeecCCCeE---EEEE--c------CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecC---CCeEEEEee-------
Q 011452 217 YKVFDLKNYTM---LYSI--S------DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE---DGTVLKSFN------- 274 (485)
Q Consensus 217 iKlWdl~~g~~---l~tl--~------~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~---tG~~L~tl~------- 274 (485)
+-+.++..... +... . ......|+++| +++|.++...+ +..||.+. ++..+..+.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~---p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKN---PIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESS---SEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcC---CceEEEEcccccCCceeeecchhhccc
Confidence 88888764331 2222 1 12468999998 44666654332 45555543 222222221
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe--cc-cC------CCceEEEEEcCCCcEEEEEe
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--SR-TE------FMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--l~-gh------~~~v~avaFspdg~llaS~s 339 (485)
.+......|+|.+..+..++.+++.+.|-+.|.+ |+.+.. |. +. ...+..|+|.|+|++++++-
T Consensus 170 ~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE 242 (255)
T 3qqz_A 170 FTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSE 242 (255)
T ss_dssp CCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEET
T ss_pred cccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcC
Confidence 1122345899986655555567799999999987 555444 33 32 24889999999999999854
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.081 Score=53.06 Aligned_cols=143 Identities=12% Similarity=0.113 Sum_probs=83.5
Q ss_pred cccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEE---Ec------CCcEEEEEEcC----CceEEEEEcCCC-
Q 011452 191 SLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYS---IS------DKNVQEIKISP----GIMLLIFTKASG- 255 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~t---l~------~~~V~~VafSp----g~~ll~sss~~~- 255 (485)
.+..|..++|+ |||+ ++++. ..+.|++++. +++.... +. ......|+|+| ++.+.++.+...
T Consensus 16 ~l~~P~~i~~~-pdG~~l~V~e-~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~ 92 (353)
T 2g8s_A 16 KLDHPWALAFL-PDNHGMLITL-RGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGD 92 (353)
T ss_dssp EESSEEEEEEC-STTCCEEEEE-TTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECS
T ss_pred CCCCcEEEEEc-CCCCEEEEEe-CCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCC
Confidence 36788999997 7999 88765 4789999985 4443211 11 23578999998 466665533210
Q ss_pred ----CeeEEEEecCCC--e--EEE----Eee---cCCcceeEEEEEecCCCEEEEEeCC--------------CcEEEEE
Q 011452 256 ----HVPLKILSIEDG--T--VLK----SFN---HLLHRNKKVDFIEQFNEKLLVKQEN--------------ENLQILD 306 (485)
Q Consensus 256 ----D~tIklWdi~tG--~--~L~----tl~---~~~~~~~~V~f~~~~~~~lls~s~D--------------~tIkIWD 306 (485)
...|-.+++..+ + ..+ .+. ...|.-..++|. |++ +|.++..| +.|.-.|
T Consensus 93 ~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 93 DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKG-YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCC-cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235555665433 1 111 122 112334589996 555 67666322 3455556
Q ss_pred CCCCe------------eEEec-ccCCCceEEEEEcC-CCcEEEEEe
Q 011452 307 VRNFE------------LTEVS-RTEFMTPSAFIFLY-ENQLFLTFR 339 (485)
Q Consensus 307 v~tg~------------~~~~l-~gh~~~v~avaFsp-dg~llaS~s 339 (485)
....- ..++. .|| ..++.++|.| +|+++++-.
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~ 216 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEH 216 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEE
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEec
Confidence 65320 11222 244 3588999999 888888755
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.12 Score=52.73 Aligned_cols=145 Identities=13% Similarity=0.125 Sum_probs=86.7
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEc------CCcEEEEEEcCC----ceEEEEEcCCCCee
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS------DKNVQEIKISPG----IMLLIFTKASGHVP 258 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~------~~~V~~VafSpg----~~ll~sss~~~D~t 258 (485)
.+..|+.++|. |||.++++.-..+.|++++..+++. +..+. ......|+|+|+ +.+.++-+...+..
T Consensus 30 gL~~P~~ia~~-pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~ 108 (347)
T 3das_A 30 GLNSPWGLAPL-PGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNR 108 (347)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEE
T ss_pred CCCCceEEEEc-CCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCE
Confidence 46789999997 7999999876689999998776663 33332 246889999983 65554423223345
Q ss_pred EEEEecCCC----------eEE-EEee-cCCcceeEEEEEecCCCEEEEE-eC-------------CCcEEEEECCCC--
Q 011452 259 LKILSIEDG----------TVL-KSFN-HLLHRNKKVDFIEQFNEKLLVK-QE-------------NENLQILDVRNF-- 310 (485)
Q Consensus 259 IklWdi~tG----------~~L-~tl~-~~~~~~~~V~f~~~~~~~lls~-s~-------------D~tIkIWDv~tg-- 310 (485)
|--|....+ +.| ..+. +..|....++|. |++ +|.++ ++ -+.|-=.|....
T Consensus 109 v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip 186 (347)
T 3das_A 109 IVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPA 186 (347)
T ss_dssp EEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBC
T ss_pred EEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCCCcc
Confidence 555555432 222 2343 223455689996 555 45444 32 123322344422
Q ss_pred ------eeEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 311 ------ELTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 311 ------~~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
.......||- .+..++|.|+|+++++=.
T Consensus 187 ~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~ 220 (347)
T 3das_A 187 PGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEF 220 (347)
T ss_dssp TTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEEC
T ss_pred CCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEec
Confidence 1111123553 567899999999888764
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.031 Score=57.38 Aligned_cols=171 Identities=15% Similarity=0.224 Sum_probs=110.5
Q ss_pred eeEEEEecCCCeEEEEeecCCcceeEEEEEec---CCCE--EEEEe--C--CCcEEEEEC--CCCeeEEecc------cC
Q 011452 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ---FNEK--LLVKQ--E--NENLQILDV--RNFELTEVSR------TE 319 (485)
Q Consensus 257 ~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~---~~~~--lls~s--~--D~tIkIWDv--~tg~~~~~l~------gh 319 (485)
.-+.+.|+ +|++|+.+.. ++...|+..+- .+++ |+..+ . +++|+|+++ .++++...-. ..
T Consensus 50 ~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~ 126 (355)
T 3amr_A 50 SGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATA 126 (355)
T ss_dssp TEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECC
T ss_pred CCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCC
Confidence 58999999 9999999984 56677776531 1222 44443 5 799999966 5666444311 12
Q ss_pred CCceEEEEE--cCC-Cc--EEEEEeCCcEEEEeC--------CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 320 FMTPSAFIF--LYE-NQ--LFLTFRNRTVAVWNF--------RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 320 ~~~v~avaF--spd-g~--llaS~sD~TIklWd~--------~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
...++.+++ +|. ++ .+++..++.+..|++ +++++++|.--. .+..++..+....|.-+-.
T Consensus 127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------q~EgcvvDd~~g~Lyv~eE- 199 (355)
T 3amr_A 127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------QTEGMAADDEYGRLYIAEE- 199 (355)
T ss_dssp CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------CEEEEEEETTTTEEEEEET-
T ss_pred CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------CcceEEEcCCCCeEEEecc-
Confidence 267888888 774 54 344434999999987 236788887532 2788999998888887754
Q ss_pred CCCCCCCcCCCCeEEEEeCC-----CCeEEEEecC-CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeE
Q 011452 387 DSDDPLAEGNAGSINISNIL-----TGKCLAKIRA-SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDIT 460 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~-----TGk~l~tl~g-H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~ 460 (485)
|.-|...+.. +++.+..+.+ |- ...|.
T Consensus 200 ----------d~GIw~~da~p~~~~~~~~v~~~~~g~l-------------------------------------~aDvE 232 (355)
T 3amr_A 200 ----------DEAIWKFSAEPDGGSNGTVIDRADGRHL-------------------------------------TRDIE 232 (355)
T ss_dssp ----------TTEEEEEECSTTSCSCCEEEEEBSSSSB-------------------------------------CSCEE
T ss_pred ----------cceEEEEeCCcCCCCCceEEEEecCCcc-------------------------------------ccCcc
Confidence 3334444433 4667766632 11 02677
Q ss_pred EEEE--cCCCC-EEEEec-CCCcEEEcc
Q 011452 461 ALFY--DEDRN-EIYTGN-RHGLVHVWS 484 (485)
Q Consensus 461 sl~f--spDg~-~LaSgs-~DgtVklWd 484 (485)
.|++ .+||+ +|+..| .+.+..|+|
T Consensus 233 GLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 233 GLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 7777 67777 455544 677888876
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.028 Score=56.61 Aligned_cols=138 Identities=11% Similarity=0.018 Sum_probs=86.0
Q ss_pred CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-EEEEee---cCCcceeEEEEEecC---CCEEEEEeC----C---
Q 011452 234 KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-VLKSFN---HLLHRNKKVDFIEQF---NEKLLVKQE----N--- 299 (485)
Q Consensus 234 ~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~-~L~tl~---~~~~~~~~V~f~~~~---~~~lls~s~----D--- 299 (485)
..-+.|+|.|++.++++... +.|+++| .+|+ .+..+. .-......|+|. |+ ++.|.++.. +
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~---g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~-pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERP---GRLVLIS-PSGKKLVASFDVANVGEAGLLGLALH-PEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp SCEEEEEEEETTEEEEEETT---TEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEEC-TTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCeEEEEcCCCeEEEEeCC---CEEEEEe-CCCceEeeccceeecCCCceeeEEeC-CCCCcCCEEEEEEeccCCCCCc
Confidence 35788999998888887543 6888887 5776 222221 112456689986 54 567776532 3
Q ss_pred -CcEEEEECCCC-------e-eEEecc-cCCCceEEEEEcCCCcEEEEEeC--------------CcEEEEeCCCc----
Q 011452 300 -ENLQILDVRNF-------E-LTEVSR-TEFMTPSAFIFLYENQLFLTFRN--------------RTVAVWNFRGE---- 351 (485)
Q Consensus 300 -~tIkIWDv~tg-------~-~~~~l~-gh~~~v~avaFspdg~llaS~sD--------------~TIklWd~~G~---- 351 (485)
..|..|++..+ + ++..+. +..+....++|.|||.++++.+| +.|.-.+.+|+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 56777777654 1 111121 22334678999999999998653 34444444564
Q ss_pred ------EEEEeecCCCCCCCCCeeEEEECC-CCCEEEEE
Q 011452 352 ------LVTSFEDHLLWHPDCNTNNIYITS-DQDLIISY 383 (485)
Q Consensus 352 ------ll~tl~gH~~~~~~~~v~svafSp-DG~~LaS~ 383 (485)
.+. -.||.. .+.++|+| +|++.++-
T Consensus 184 npf~~~~i~-a~G~rn------p~Gla~d~~~g~l~v~d 215 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHRN------PQGIDWHRASGVMVATE 215 (354)
T ss_dssp SSSTTCCEE-EECCSC------CCEEEECTTTCCEEEEE
T ss_pred CCCCCCcEE-EEccCC------cceEEEeCCCCCEEEEe
Confidence 222 235543 46899999 78877764
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.066 Score=54.52 Aligned_cols=172 Identities=9% Similarity=0.087 Sum_probs=102.6
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE-EEcC-----C---cEEEEEE---cCCceEEEEEcCCCCeeEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY-SISD-----K---NVQEIKI---SPGIMLLIFTKASGHVPLK 260 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~-tl~~-----~---~V~~Vaf---Spg~~ll~sss~~~D~tIk 260 (485)
.+|..+.|++.+|.+++|.-..++|-.||...+.... .+.+ . .+..|.+ -|+++|++.....
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~------ 86 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA------ 86 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET------
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc------
Confidence 4677899987789999988899999999998664322 3322 1 3567777 4556555531100
Q ss_pred EEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECC---CCeeEEec--c----c-------CCCceE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR---NFELTEVS--R----T-------EFMTPS 324 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~---tg~~~~~l--~----g-------h~~~v~ 324 (485)
.+|... +.. -+.+.-|..+|+. +++.+... . + -...++
T Consensus 87 ----------------------~af~~~-g~~---~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 87 ----------------------KSFNFA-DQS---SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp ----------------------TTTCTT-SCC---SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE
T ss_pred ----------------------cccccc-ccc---cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc
Confidence 000000 000 0123445555555 44433221 1 1 122478
Q ss_pred EEEEcCCCcEEEEEe-C-CcEEEEeCCCcEEEEeecCC-CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 325 AFIFLYENQLFLTFR-N-RTVAVWNFRGELVTSFEDHL-LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 325 avaFspdg~llaS~s-D-~TIklWd~~G~ll~tl~gH~-~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
.++.-++|+..++++ - +.|-..+.+|+.+..+.-.. .....+..+.|+++|||++|+.... ++.+-
T Consensus 141 DvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-----------~g~L~ 209 (334)
T 2p9w_A 141 QSAQDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-----------PRALT 209 (334)
T ss_dssp EEEECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-----------SSSEE
T ss_pred eeEECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-----------CCeEE
Confidence 888999999999988 7 77666666787555442111 1111233679999999998887632 68888
Q ss_pred EEeCCC
Q 011452 402 ISNILT 407 (485)
Q Consensus 402 lWdl~T 407 (485)
-.|+.+
T Consensus 210 ~fD~~~ 215 (334)
T 2p9w_A 210 AFDVSK 215 (334)
T ss_dssp EEECSS
T ss_pred EEcCCC
Confidence 888763
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.41 Score=48.81 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=92.2
Q ss_pred EEEEEEcCCceEEEEEc----------CCCCeeEEEEecC--CCeEEE-EeecC-----CcceeEEEEEec-CCC-EEEE
Q 011452 236 VQEIKISPGIMLLIFTK----------ASGHVPLKILSIE--DGTVLK-SFNHL-----LHRNKKVDFIEQ-FNE-KLLV 295 (485)
Q Consensus 236 V~~VafSpg~~ll~sss----------~~~D~tIklWdi~--tG~~L~-tl~~~-----~~~~~~V~f~~~-~~~-~lls 295 (485)
-.+|++.|++.+.+++. .+.++.|-++|.. +++... .+.+. .-+--.+++.+. ++. +|.+
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 34555666666655541 0134678888876 333211 22221 113336666432 333 4655
Q ss_pred E-e--CCCcEEEEECCCC--e--eEEecccC-CCceEEEEEcCCCcEEEEEe----C------------CcEEEEeCC-C
Q 011452 296 K-Q--ENENLQILDVRNF--E--LTEVSRTE-FMTPSAFIFLYENQLFLTFR----N------------RTVAVWNFR-G 350 (485)
Q Consensus 296 ~-s--~D~tIkIWDv~tg--~--~~~~l~gh-~~~v~avaFspdg~llaS~s----D------------~TIklWd~~-G 350 (485)
. . .+.+|.||++..+ . .+....+. ...++.+++.++|.+.+|.. | .+=+||-++ +
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4 2 4789999887653 2 23334332 45799999999999888753 2 234566665 5
Q ss_pred cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC-CCe
Q 011452 351 ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL-TGK 409 (485)
Q Consensus 351 ~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~-TGk 409 (485)
++...+++ ... -|.|+|||||++|.-+.. ..+.|..+++. +|+
T Consensus 212 ~~~~~~~~-l~~-----pNGia~spDg~~lYvadt----------~~~~I~~~~~~~~g~ 255 (355)
T 3sre_A 212 DVRVVAEG-FDF-----ANGINISPDGKYVYIAEL----------LAHKIHVYEKHANWT 255 (355)
T ss_dssp CCEEEEEE-ESS-----EEEEEECTTSSEEEEEEG----------GGTEEEEEEECTTSC
T ss_pred eEEEeecC-Ccc-----cCcceECCCCCEEEEEeC----------CCCeEEEEEECCCCc
Confidence 54333333 222 689999999988776643 25889999985 343
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.96 Score=46.04 Aligned_cols=181 Identities=13% Similarity=0.114 Sum_probs=108.4
Q ss_pred CceEEEEeCCCCeEEEEee------------CCCcEEEeecCC--CeE-EEEEcC-------CcEEEEEEcC--Cc--eE
Q 011452 194 WPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKN--YTM-LYSISD-------KNVQEIKISP--GI--ML 247 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s------------~D~tiKlWdl~~--g~~-l~tl~~-------~~V~~VafSp--g~--~l 247 (485)
.+..++.+ |+|..+++++ .++.|-++|+++ ++. ...+.+ -.-..|.+.+ ++ .|
T Consensus 51 G~EDi~~~-~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEIL-PNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEEC-TTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEc-CCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 35577776 6888877763 688899999873 332 122222 1455666643 23 45
Q ss_pred EEEEcCCCCeeEEEEecCCC-e---EEEEeecC-CcceeEEEEEecCCCEEEEEeC----C------------CcEEEEE
Q 011452 248 LIFTKASGHVPLKILSIEDG-T---VLKSFNHL-LHRNKKVDFIEQFNEKLLVKQE----N------------ENLQILD 306 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG-~---~L~tl~~~-~~~~~~V~f~~~~~~~lls~s~----D------------~tIkIWD 306 (485)
.+........+|.||++..+ . .+.++.+. ......+++. ++| .+.++.. | .+=+||-
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~-~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV-GPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE-ETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEe-CCC-CEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 55544444578999887653 2 23455542 1234577775 334 4444431 1 2345665
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCcEEEE-Ee-CCcEEEEeCC--CcEE--EEeecCCCCCCCCCeeEEEECC-CCCE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFR--GELV--TSFEDHLLWHPDCNTNNIYITS-DQDL 379 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~llaS-~s-D~TIklWd~~--G~ll--~tl~gH~~~~~~~~v~svafSp-DG~~ 379 (485)
+..+++.... .....++.++|||||+.|.- -+ .+.|..++++ |++- +.+. .. ..--++++.+ +|.+
T Consensus 208 ~d~~~~~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~----g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 208 YSPNDVRVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FD----TLVDNISVDPVTGDL 280 (355)
T ss_dssp ECTTCCEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CS----SEEEEEEECTTTCCE
T ss_pred EECCeEEEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CC----CCCceEEEeCCCCcE
Confidence 5545544333 44568999999999976554 45 8899999984 6542 2442 11 1256899999 5999
Q ss_pred EEEEe
Q 011452 380 IISYC 384 (485)
Q Consensus 380 LaS~s 384 (485)
.+++.
T Consensus 281 wva~~ 285 (355)
T 3sre_A 281 WVGCH 285 (355)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88765
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.63 Score=47.33 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=98.7
Q ss_pred EEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccC-------CCceEEEEE---cCCCcEEEEEe-----------
Q 011452 282 KVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTE-------FMTPSAFIF---LYENQLFLTFR----------- 339 (485)
Q Consensus 282 ~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh-------~~~v~avaF---spdg~llaS~s----------- 339 (485)
+++|. +..+.+..++ ..++|-.||...+...++.-.+ ...+..+.+ -|+|++++...
T Consensus 17 ~~~wd-~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~ 95 (334)
T 2p9w_A 17 DTIYD-RTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS 95 (334)
T ss_dssp CEEEE-TTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred CccCc-CCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence 56665 3457888877 8999999999866544442222 125688999 48999998532
Q ss_pred ---CCcEEEEeCC----CcEEEEee--cCCCC-------CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC-CeEEE
Q 011452 340 ---NRTVAVWNFR----GELVTSFE--DHLLW-------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA-GSINI 402 (485)
Q Consensus 340 ---D~TIklWd~~----G~ll~tl~--gH~~~-------~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D-gtIkl 402 (485)
++-|..+|+. |+.+.... +.... .+ ...+.+++.++|..-++++. - +.|-.
T Consensus 96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~-~~~nDvavD~~GnaYVt~s~-----------~~~~I~r 163 (334)
T 2p9w_A 96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP-FGVVQSAQDRDGNSYVAFAL-----------GMPAIAR 163 (334)
T ss_dssp SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC-EEEEEEEECTTSCEEEEEEE-----------SSCEEEE
T ss_pred cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc-cCCceeEECCCCCEEEeCCC-----------CCCeEEE
Confidence 4678899987 77655433 22110 00 11689999999999999886 3 55544
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
.+.. |+.+..+--...+. .+. -..+.++|+|||+.|+.....+.+.-
T Consensus 164 V~pd-G~~~~~~~~~~~~~---------------------~~~-----------~G~nGIv~~pdg~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 164 VSAD-GKTVSTFAWESGNG---------------------GQR-----------PGYSGITFDPHSNKLIAFGGPRALTA 210 (334)
T ss_dssp ECTT-SCCEEEEEECCCCS---------------------SSC-----------CSCSEEEEETTTTEEEEESSSSSEEE
T ss_pred EeCC-CCEEeeeeecCCCc---------------------ccc-----------cCcceEEEeCCCCEEEEEcCCCeEEE
Confidence 4432 55444332111000 000 14668999999998888766776654
Q ss_pred cc
Q 011452 483 WS 484 (485)
Q Consensus 483 Wd 484 (485)
.|
T Consensus 211 fD 212 (334)
T 2p9w_A 211 FD 212 (334)
T ss_dssp EE
T ss_pred Ec
Confidence 43
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.79 E-value=1.9 Score=43.66 Aligned_cols=228 Identities=12% Similarity=0.123 Sum_probs=119.3
Q ss_pred EEEEEe--cCEEEEEeCCCeEEeeecccCcE--EEEee---cCCcccEEEEEEeeC----CCEEEEEEeecCCCCcccce
Q 011452 99 IEIVAA--RDIVFALAQSGVCAAFCRETNQR--ICFLN---VTADEVIRSLFYNKN----NDSLITVSVYASDNFSSLRC 167 (485)
Q Consensus 99 ~~i~~s--~~~ias~s~dgtiklW~~~tG~~--l~tl~---g~~~~~i~sv~~spd----g~~Las~S~d~~~d~stL~~ 167 (485)
+.|+|. |.++++--..|.|++++..+|+. +..+. .........|+|+|| |...++-+. ...+
T Consensus 35 ~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~-~~~~------ 107 (347)
T 3das_A 35 WGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS-ASDN------ 107 (347)
T ss_dssp EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC-SSSE------
T ss_pred eEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec-CCCC------
Confidence 456665 66655555599999998665664 22221 112446789999995 544343221 1222
Q ss_pred eEEEEeEeccC-----CcCcccceeeec---cccCceEEEEeCCCCeEEEEeeC--------C---CcEEEeecC-CCe-
Q 011452 168 RSTRIEYIRRG-----KPDAGFALFESE---SLKWPGFVEFDDVNGKVLTYSAQ--------D---SIYKVFDLK-NYT- 226 (485)
Q Consensus 168 ~t~~lw~i~~G-----~~~~~~~lf~~~---~~~~~~~V~Fs~pnG~~Las~s~--------D---~tiKlWdl~-~g~- 226 (485)
+..++-+ ..+ ++.....+|... ...+...++|+ |||.+.++-+. | ..=|||.+. +|+
T Consensus 108 ~v~R~~~-~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg-pDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 108 RIVRMLY-DEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG-PDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp EEEEEEB-CTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC-TTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred EEEEEEe-CCCCcccccCCCcEEEEEcCCCCCCccCccccCC-CCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 3334322 232 222223345431 11123469998 79998877542 1 112334333 222
Q ss_pred ---------EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE------------------EEEeecCCcc
Q 011452 227 ---------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV------------------LKSFNHLLHR 279 (485)
Q Consensus 227 ---------~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~------------------L~tl~~~~~~ 279 (485)
.++..--.+.+.++|.|++.|.++.-. .|..=.|--++.|.- +..+..+...
T Consensus 186 p~~nPf~~~~i~a~G~RNp~Gla~dp~G~L~~~d~g-~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~a 264 (347)
T 3das_A 186 APGNPFPGSPVYSYGHRNVQGLAWDDKQRLFASEFG-QDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEAS 264 (347)
T ss_dssp CTTCSSTTCCEEEBCCSBCCEEEECTTCCEEEEECC-SSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCC
T ss_pred cCCCCCCCCeEEeeCCCCcceEEECCCCCEEEEecC-CCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCC
Confidence 344432346788999997777766432 222112222222211 1112111012
Q ss_pred eeEEEEEecCCCEEEEEe-CCCcEEEEECCCCe----eEEecccCCCceEEEEEcCCCcEEEEEe
Q 011452 280 NKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFE----LTEVSRTEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~----~~~~l~gh~~~v~avaFspdg~llaS~s 339 (485)
-..++|. ++.++.+. ..+.|.-..+..+. ....+.+...++..|++.|||.++++..
T Consensus 265 p~G~~~~---~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA---EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp EEEEEEE---TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred CcceEEE---cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 2366775 34566654 45555555665442 3445666667999999999999988755
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.11 E-value=2.8 Score=41.22 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=125.0
Q ss_pred EecCEEEEEe--CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCC--Ccc--cceeEEEEeEec
Q 011452 103 AARDIVFALA--QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN--FSS--LRCRSTRIEYIR 176 (485)
Q Consensus 103 ~s~~~ias~s--~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d--~st--L~~~t~~lw~i~ 176 (485)
+.++.|+-.. .++.+...+.+ |.....|.. + ..-+++|+|+.|.-++.....+ .+- ..-+.+...++.
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~--~---~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d 96 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSN--D---TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN 96 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEEE--E---EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEccC--C---ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence 3444444443 24444444444 544444433 1 2357799999999876422100 000 001344444533
Q ss_pred cCCcCcccceeeeccccCceEEEEeCCCCeEEEEee--CCCcEEEeecC-CCeEEEEEcCCcEEEEEEcC-CceEEEEEc
Q 011452 177 RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLK-NYTMLYSISDKNVQEIKISP-GIMLLIFTK 252 (485)
Q Consensus 177 ~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~-~g~~l~tl~~~~V~~VafSp-g~~ll~sss 252 (485)
.++. .+.... ...+|+ ++|+.|.... .++.-+|+-++ +|+....|..+.+ .+|+| ++.|. ..+
T Consensus 97 g~~~----~~l~~~-----~~~~~s-~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy-~t~ 163 (302)
T 3s25_A 97 GHGS----TVLDPD-----PCIYAS-LIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFY-YNN 163 (302)
T ss_dssp SCCC----EEEECS-----CEEEEE-EETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEE-EEC
T ss_pred CCcc----eEeecC-----CccEEE-EeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEE-EEe
Confidence 3321 122221 123676 5788888876 34444454433 3444445544444 56776 44544 434
Q ss_pred CCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC--CcEEEEECCCCeeEEecccCCCceEEEEEcC
Q 011452 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN--ENLQILDVRNFELTEVSRTEFMTPSAFIFLY 330 (485)
Q Consensus 253 ~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D--~tIkIWDv~tg~~~~~l~gh~~~v~avaFsp 330 (485)
. ...+|..-++..+....-+++ ... ..++ |+++.|.-...+ ..|..=++..++ .++|.... + -.|+|
T Consensus 164 ~-g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~-P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt~~~--~--~~~~~ 232 (302)
T 3s25_A 164 P-KNGQLYRYDTASQSEALFYDC---NCY-KPVV-LDDTNVYYMDVNRDNAIVHVNINNPN-PVVLTEAN--I--EHYNV 232 (302)
T ss_dssp T-TTCCEEEEETTTTEEEEEECS---CEE-EEEE-EETTEEEEEEGGGTTEEEEECSSSCC-CEECSCSC--E--EEEEE
T ss_pred C-CCceEEEEECCCCCEEEEeCC---Ccc-ceee-ecCCEEEEEEcCCCcEEEEEECCCCC-eEEEeCCC--c--ceEEE
Confidence 3 457898889876655444443 222 2344 678888877533 456666777655 34443322 2 23788
Q ss_pred CCcEEEEEe---CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEE
Q 011452 331 ENQLFLTFR---NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 331 dg~llaS~s---D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS 382 (485)
+|+.|.-++ ...|..=+++|.-.+.+.... +. ++++-+++|.=
T Consensus 233 ~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~~-------~~--~i~i~~d~Iy~ 278 (302)
T 3s25_A 233 YGSLIFYQRGGDNPALCVVKNDGTGFKELAKGE-------FC--NINVTSQYVYF 278 (302)
T ss_dssp ETTEEEEEECSSSCEEEEEETTSCCCEEEEESC-------EE--EEEECSSEEEE
T ss_pred CCCEEEEEECCCCcEEEEEECCCCccEEeeCCc-------cc--eEEEeCCEEEE
Confidence 998887543 346666667776544443321 33 44555666654
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.07 E-value=2.5 Score=44.04 Aligned_cols=154 Identities=7% Similarity=0.094 Sum_probs=88.9
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEc--------CCcEEEEEEcC----CceEEEEEcC---
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSIS--------DKNVQEIKISP----GIMLLIFTKA--- 253 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~--------~~~V~~VafSp----g~~ll~sss~--- 253 (485)
.+.+|+.++|+ |||.++++....+.|++++..+|+. +..+. ......|+|+| ++.+.++.+.
T Consensus 25 ~l~~P~~~a~~-pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 25 NLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCCCceEEEEc-CCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 36788999997 7999999865545788888766653 33442 23577999998 6776666432
Q ss_pred ---CC----CeeEEEEecCCC-------eEEE-Eee-cCCcceeEEEEEecCCCEEEEEeCC------------------
Q 011452 254 ---SG----HVPLKILSIEDG-------TVLK-SFN-HLLHRNKKVDFIEQFNEKLLVKQEN------------------ 299 (485)
Q Consensus 254 ---~~----D~tIklWdi~tG-------~~L~-tl~-~~~~~~~~V~f~~~~~~~lls~s~D------------------ 299 (485)
+. ...|.-++...+ +.+. .+. +..|....++|. +++...++.++.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~-pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p 182 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG-PDQKIYYTIGDQGRNQLAYLFLPNQAQHTP 182 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC-TTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC-CCCeEEEEECCCCCCCcccccccccccccc
Confidence 00 124444444322 1222 233 223556799996 555444433321
Q ss_pred --------------CcEEEEECCCCe-----------eEEe-cccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeC
Q 011452 300 --------------ENLQILDVRNFE-----------LTEV-SRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNF 348 (485)
Q Consensus 300 --------------~tIkIWDv~tg~-----------~~~~-l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~ 348 (485)
+.|--.|.. |. ..++ ..||- .+..++|.|+|+++++-. |+--.|.-+
T Consensus 183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~R-Np~gla~dp~G~L~~~d~g~~~~dein~i 257 (454)
T 1cru_A 183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGHR-NPQGLAFTPNGKLLQSEQGPNSDDEINLI 257 (454)
T ss_dssp CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCCS-EEEEEEECTTSCEEEEEECSSSCEEEEEC
T ss_pred ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECCC-CcceEEECCCCCEEEEecCCCCCeEEEEe
Confidence 122222433 22 1122 23553 588899999999988765 554455544
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.42 Score=50.31 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=49.1
Q ss_pred eEEecccCCCceEEEEEcCCCc--EEEEEeCCcEEEEeCCCcE----EEEeecCCCC----CCCCCeeEEEECCC----C
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQ--LFLTFRNRTVAVWNFRGEL----VTSFEDHLLW----HPDCNTNNIYITSD----Q 377 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~--llaS~sD~TIklWd~~G~l----l~tl~gH~~~----~~~~~v~svafSpD----G 377 (485)
.++++......+++++|.|||+ +|++-..+.|++++.+|.. +..+..-... ........|+|.|| |
T Consensus 5 ~v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~ 84 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNG 84 (463)
T ss_dssp EEEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHC
T ss_pred EEEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCC
Confidence 3444444456899999999996 8888779999999876542 2222211000 00123688999996 8
Q ss_pred CEEEEEec
Q 011452 378 DLIISYCK 385 (485)
Q Consensus 378 ~~LaS~s~ 385 (485)
.+-++++.
T Consensus 85 ~lYv~yt~ 92 (463)
T 2wg3_C 85 KLYVSYTT 92 (463)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEeC
Confidence 88898875
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.78 Score=47.84 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=47.7
Q ss_pred EEecccCCCceEEEEEcCCCcEEEEEeC-CcEEEEeCC-CcE--EEEeecCCC-CCCCCCeeEEEECC----CCCEEEEE
Q 011452 313 TEVSRTEFMTPSAFIFLYENQLFLTFRN-RTVAVWNFR-GEL--VTSFEDHLL-WHPDCNTNNIYITS----DQDLIISY 383 (485)
Q Consensus 313 ~~~l~gh~~~v~avaFspdg~llaS~sD-~TIklWd~~-G~l--l~tl~gH~~-~~~~~~v~svafSp----DG~~LaS~ 383 (485)
++++......+++++|.|||+++++-.. +.|.+++.. |+. +..+..-.. .........|+|+| +|.+.+++
T Consensus 19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 3344334568899999999999999884 579888874 653 333432110 00112367999999 67777877
Q ss_pred ec
Q 011452 384 CK 385 (485)
Q Consensus 384 s~ 385 (485)
+.
T Consensus 99 s~ 100 (454)
T 1cru_A 99 TF 100 (454)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.89 E-value=7.9 Score=45.26 Aligned_cols=215 Identities=12% Similarity=0.106 Sum_probs=123.2
Q ss_pred CCCcEEEeecCCCe--EEEEEc-CCcEEEEEEcC-CceEEEEEcCC----------------------------------
Q 011452 213 QDSIYKVFDLKNYT--MLYSIS-DKNVQEIKISP-GIMLLIFTKAS---------------------------------- 254 (485)
Q Consensus 213 ~D~tiKlWdl~~g~--~l~tl~-~~~V~~VafSp-g~~ll~sss~~---------------------------------- 254 (485)
.++++||..+.+.+ .+.+++ +..+..|+++| .+.+++..+..
T Consensus 713 ~~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1158)
T 3ei3_A 713 NNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSS 792 (1158)
T ss_dssp CSSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC---
T ss_pred cCCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccccc
Confidence 35679998876433 344554 66788899987 33333322110
Q ss_pred ------------CCeeEEEEecCCCeEEEEeecCC-cceeEEEEEecC---CCEEEEEe------C----CCcEEEEECC
Q 011452 255 ------------GHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQF---NEKLLVKQ------E----NENLQILDVR 308 (485)
Q Consensus 255 ------------~D~tIklWdi~tG~~L~tl~~~~-~~~~~V~f~~~~---~~~lls~s------~----D~tIkIWDv~ 308 (485)
.-..|+|.|-.+.+.+.++.--. ..+.+++..... .+.+++|. + -|-|.++++.
T Consensus 793 ~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~ 872 (1158)
T 3ei3_A 793 TAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYS 872 (1158)
T ss_dssp -------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEE
T ss_pred ccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEE
Confidence 01358999998999887776211 223444433221 35777763 1 2679999998
Q ss_pred CCeeEEecc-cCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 309 NFELTEVSR-TEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 309 tg~~~~~l~-gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
.+++..+.. ...+.|.+++= -+|+ |+.+-.++|+||++. .++++ ++.... +. |..+.+...|++|+-|..
T Consensus 873 ~~kL~lv~~~~v~g~v~al~~-~~g~-Lla~ig~~l~vy~l~~~~~L~-~~~~~~--~~--i~~~~l~~~~~~I~vgD~- 944 (1158)
T 3ei3_A 873 DGKLQTVAEKEVKGAVYSMVE-FNGK-LLASINSTVRLYEWTTEKELR-TECNHY--NN--IMALYLKTKGDFILVGDL- 944 (1158)
T ss_dssp TTEEEEEEEEEESSCEEEEEE-ETTE-EEEEETTEEEEEEECTTSCEE-EEEEEC--CC--SCEEEEEEETTEEEEEES-
T ss_pred CCEEEEEEEEEcCCcCEEEee-eCCE-EEEEcCCEEEEEECCCCceEE-EEeecc--cc--EEEEEEeccCCEEEEEEh-
Confidence 665544332 23567888762 2454 555568899999996 44444 322110 01 334455456778887754
Q ss_pred CCCCCCCcCCCCeEEE--EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE
Q 011452 387 DSDDPLAEGNAGSINI--SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY 464 (485)
Q Consensus 387 ~~~d~~~~~~DgtIkl--Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f 464 (485)
-.+|-+ |+-..++.. .+-.+.. -.+|+++.|
T Consensus 945 ----------~~Sv~~~~y~~~~~~L~-~~a~D~~------------------------------------~~~vta~~~ 977 (1158)
T 3ei3_A 945 ----------MRSVLLLAYKPMEGNFE-EIARDFN------------------------------------PNWMSAVEI 977 (1158)
T ss_dssp ----------SBCEEEEEEETTTTEEE-EEEECCS------------------------------------CBCEEEEEE
T ss_pred ----------hheEEEEEEEcCCCeEE-EEEeecc------------------------------------cccEEEEEE
Confidence 244544 443333332 2322221 038999888
Q ss_pred cCCCCEEEEecCCCcEEEc
Q 011452 465 DEDRNEIYTGNRHGLVHVW 483 (485)
Q Consensus 465 spDg~~LaSgs~DgtVklW 483 (485)
=-++ .++.|..+|.+.+.
T Consensus 978 ld~~-t~l~aD~~gNl~vl 995 (1158)
T 3ei3_A 978 LDDD-NFLGAENAFNLFVC 995 (1158)
T ss_dssp EETT-EEEEEETTSEEEEE
T ss_pred EccC-cEEEEcCCCcEEEE
Confidence 6554 66668888888764
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.74 E-value=3.7 Score=40.80 Aligned_cols=234 Identities=10% Similarity=0.087 Sum_probs=119.4
Q ss_pred EEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEee------cCCcccEEEEEEeeC----CCEEEEEEeecCCCCcccc
Q 011452 99 IEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN------VTADEVIRSLFYNKN----NDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 99 ~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~------g~~~~~i~sv~~spd----g~~Las~S~d~~~d~stL~ 166 (485)
+.|+|. |..|+.+...|.|++++.. |+....+. .........|+|+|| +...++-+..+.++- .
T Consensus 21 ~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~---~ 96 (353)
T 2g8s_A 21 WALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK---A 96 (353)
T ss_dssp EEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC---E
T ss_pred EEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC---c
Confidence 456665 6525556678999998854 54321111 112335689999995 544444232111110 0
Q ss_pred eeEEEEeEecc--CCcCcccceeeec-----cccCceEEEEeCCCCeEEEEeeCC-------------CcEEEeecCCC-
Q 011452 167 CRSTRIEYIRR--GKPDAGFALFESE-----SLKWPGFVEFDDVNGKVLTYSAQD-------------SIYKVFDLKNY- 225 (485)
Q Consensus 167 ~~t~~lw~i~~--G~~~~~~~lf~~~-----~~~~~~~V~Fs~pnG~~Las~s~D-------------~tiKlWdl~~g- 225 (485)
...+.-+++.. +++.....++... ...+...++|+ |||.+.++-+.. +.|.-.|....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~-pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD-GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC-SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC-CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 01222222221 2222112233321 11235679998 799887775431 23444454321
Q ss_pred -------------eEEEEEcCCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeE----------------------
Q 011452 226 -------------TMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV---------------------- 269 (485)
Q Consensus 226 -------------~~l~tl~~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~---------------------- 269 (485)
..++..--.+.+.++|.| ++.|.++.... +..=.|.-++.|.-
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~-~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGP-RGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECS-BSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCC-CCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 123443335789999998 77777764321 11112222222211
Q ss_pred ---------EEEeecCCcceeEEEEEec-----CCCEEEEEe-CCCcEEEEECCCCeeEE---ecccCCCceEEEEEcCC
Q 011452 270 ---------LKSFNHLLHRNKKVDFIEQ-----FNEKLLVKQ-ENENLQILDVRNFELTE---VSRTEFMTPSAFIFLYE 331 (485)
Q Consensus 270 ---------L~tl~~~~~~~~~V~f~~~-----~~~~lls~s-~D~tIkIWDv~tg~~~~---~l~gh~~~v~avaFspd 331 (485)
+..+..| .....++|..- ..+.++++. ..+.|...++..++... .+.+....+..+++.||
T Consensus 255 ~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd 333 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD 333 (353)
T ss_dssp SSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred CCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence 1122221 12345676521 135666664 77888888887765432 23344458999999999
Q ss_pred CcEEEEEe
Q 011452 332 NQLFLTFR 339 (485)
Q Consensus 332 g~llaS~s 339 (485)
|.++++..
T Consensus 334 G~lyv~td 341 (353)
T 2g8s_A 334 GYLYVLTD 341 (353)
T ss_dssp SCEEEEEC
T ss_pred CcEEEEEe
Confidence 99888643
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=94.73 E-value=3.5 Score=40.48 Aligned_cols=160 Identities=8% Similarity=-0.009 Sum_probs=96.6
Q ss_pred CCCeEEEEeeCC--------------CcEEEeecCCCeEEEEEcCCcEEEEEEcC-CceEEEEE-cCCCCeeEEEEecCC
Q 011452 203 VNGKVLTYSAQD--------------SIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFT-KASGHVPLKILSIED 266 (485)
Q Consensus 203 pnG~~Las~s~D--------------~tiKlWdl~~g~~l~tl~~~~V~~VafSp-g~~ll~ss-s~~~D~tIklWdi~t 266 (485)
++|..|.+++.. ..|+.-++.+++ ...+...... +|+| +.+++-+. +.+....|..-++.
T Consensus 62 ~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~-~~~l~~~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d- 137 (302)
T 3s25_A 62 ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHG-STVLDPDPCI--YASLIGNYIYYLHYDTQTATSLYRIRID- 137 (302)
T ss_dssp ECSSEEEEEEECC------CCSSCCSEEEEEEETTSCC-CEEEECSCEE--EEEEETTEEEEEEESSSSCEEEEEEETT-
T ss_pred EcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCc-ceEeecCCcc--EEEEeCCEEEEEeecCCCCceEEEEECC-
Confidence 678888888653 345555665544 2223333322 5675 66665543 13445778888874
Q ss_pred CeEEEEeecCCcceeEEEEEecCCCEEEEEeC-CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe--C-Cc
Q 011452 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE-NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR--N-RT 342 (485)
Q Consensus 267 G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~-D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s--D-~T 342 (485)
|.....+..+. . .+|. ++++.|.-.+. ..+|..-++.++....++.+. . ...+.|++..|+=.. + ..
T Consensus 138 Gs~~~~lt~~~--~--~~~~-~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~---~-~~~~~P~g~~iy~t~~~~~~~ 208 (302)
T 3s25_A 138 GEEKKKIKNHY--L--FTCN-TSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN---C-YKPVVLDDTNVYYMDVNRDNA 208 (302)
T ss_dssp SCCCEEEESSC--C--CCSE-EETTEEEEECTTTCCEEEEETTTTEEEEEECSC---E-EEEEEEETTEEEEEEGGGTTE
T ss_pred CCCeEEEeCCC--c--eEee-EECCEEEEEeCCCceEEEEECCCCCEEEEeCCC---c-cceeeecCCEEEEEEcCCCcE
Confidence 55566666432 2 3343 56788887764 688888899877765554432 2 234668888877544 3 35
Q ss_pred EEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 343 VAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 343 IklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
|..=+++|.-.+.|.... + ..|+|+|++|.-++
T Consensus 209 I~~~~ldG~~~~~Lt~~~-------~--~~~~~~g~~Iy~~~ 241 (302)
T 3s25_A 209 IVHVNINNPNPVVLTEAN-------I--EHYNVYGSLIFYQR 241 (302)
T ss_dssp EEEECSSSCCCEECSCSC-------E--EEEEEETTEEEEEE
T ss_pred EEEEECCCCCeEEEeCCC-------c--ceEEECCCEEEEEE
Confidence 655667776666676432 3 34788999997554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.38 E-value=7 Score=45.69 Aligned_cols=233 Identities=10% Similarity=0.009 Sum_probs=125.5
Q ss_pred CEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecC----CC-Cc---------------
Q 011452 106 DIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYAS----DN-FS--------------- 163 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~----~d-~s--------------- 163 (485)
+-++..+ ++++++..++.-+ .++++.- ...++.|+|+|+.+.++.+..+.. ++ ..
T Consensus 707 ~g~v~~~-~~~LrI~~i~~~~~~~~~~ipL--~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1158)
T 3ei3_A 707 DSLALAN-NSTLTIGTIDEIQKLHIRTVPL--YESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSV 783 (1158)
T ss_dssp TEEEEEC-SSCEEEEEECCSSSEEEEEEEC--SSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEE
T ss_pred CcEEEEc-CCceEEEEecccCCeeEEEEeC--CCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcc
Confidence 3344333 4557777665322 2334443 357899999999998665543210 00 00
Q ss_pred -------------------ccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee----------CC
Q 011452 164 -------------------SLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA----------QD 214 (485)
Q Consensus 164 -------------------tL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s----------~D 214 (485)
......++|-|..+.+......|-+.|....+..|.|......+|+-|. .-
T Consensus 784 ~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~ 863 (1158)
T 3ei3_A 784 SSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQ 863 (1158)
T ss_dssp CCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCC
T ss_pred cccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCc
Confidence 0012345555544343321111111122222234567533346776663 24
Q ss_pred CcEEEeecCCCeEEEEEc----CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 215 SIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~----~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
|-|.|+++.++++ .-++ ...|.+++== +|+++++.. ++|+||++...+.|+.-..+-.++..+... ..+
T Consensus 864 Gri~vf~v~~~kL-~lv~~~~v~g~v~al~~~-~g~Lla~ig----~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~-~~~ 936 (1158)
T 3ei3_A 864 GRIVVFQYSDGKL-QTVAEKEVKGAVYSMVEF-NGKLLASIN----STVRLYEWTTEKELRTECNHYNNIMALYLK-TKG 936 (1158)
T ss_dssp EEEEEEEEETTEE-EEEEEEEESSCEEEEEEE-TTEEEEEET----TEEEEEEECTTSCEEEEEEECCCSCEEEEE-EET
T ss_pred eEEEEEEEECCEE-EEEEEEEcCCcCEEEeee-CCEEEEEcC----CEEEEEECCCCceEEEEeeccccEEEEEEe-ccC
Confidence 6788888876553 2222 3567776533 457777653 599999998766665211111122222221 236
Q ss_pred CEEEEEeCCCcEEE--EECCCCeeEEeccc-CCCceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 291 EKLLVKQENENLQI--LDVRNFELTEVSRT-EFMTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 291 ~~lls~s~D~tIkI--WDv~tg~~~~~l~g-h~~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
+++++|-.=+.|.+ |+...+++...-+. +..++.++.|..++..+++-.++.|-+...
T Consensus 937 ~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 937 DFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQK 997 (1158)
T ss_dssp TEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEE
T ss_pred CEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEec
Confidence 78888864444444 66666666665433 566899999998876555434888877754
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.26 E-value=4.2 Score=42.95 Aligned_cols=152 Identities=14% Similarity=0.194 Sum_probs=91.4
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEecccC----CCceEEEEEcCCCcEEEEEeCCcEEEEeCC-Cc-----------
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVSRTE----FMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GE----------- 351 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh----~~~v~avaFspdg~llaS~sD~TIklWd~~-G~----------- 351 (485)
..|..+... .++.||.=++..+..-+.+.-. +..+..+..||+|++||-.++.+|.|=.+- +.
T Consensus 30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~ 108 (452)
T 3pbp_A 30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDA 108 (452)
T ss_dssp TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHT
T ss_pred cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccc
Confidence 334444443 3477777777643333343222 336778999999999999999999998874 32
Q ss_pred -EEEEeecCCCC-CCCCCeeEEEECCCC---CEEEEEecCCCCCCCCcCCCCeEEEEeCCCCe--EEEEecCCCCCCCCc
Q 011452 352 -LVTSFEDHLLW-HPDCNTNNIYITSDQ---DLIISYCKADSDDPLAEGNAGSINISNILTGK--CLAKIRASNGLPAEN 424 (485)
Q Consensus 352 -ll~tl~gH~~~-~~~~~v~svafSpDG---~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk--~l~tl~gH~~~~~~~ 424 (485)
..+++.=.... .+...|..+-|.|-| ..|+.=.. |++||+||+.... .. +|+-..+
T Consensus 109 ~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLts-----------D~~Ir~yDl~~s~~~P~-~L~k~~~----- 171 (452)
T 3pbp_A 109 FQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKE-----------DDTITMFDILNSQEKPI-VLNKPNN----- 171 (452)
T ss_dssp TEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEET-----------TSCEEEEETTCTTSCCE-EESCCCS-----
T ss_pred cceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEec-----------CCEEEEEEcccCCCCCc-chhcccc-----
Confidence 12233211100 011238899999943 45666554 7999999997522 12 3432110
Q ss_pred ccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEec--CCCcEE
Q 011452 425 ECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN--RHGLVH 481 (485)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs--~DgtVk 481 (485)
...+ ......|.+++|.++|=+||-.+ +.|-|.
T Consensus 172 --------------------~fg~----d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 172 --------------------SFGL----DARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp --------------------EEES----CSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred --------------------ccCC----CcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 0000 00114899999999999999965 888774
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.52 E-value=5 Score=37.72 Aligned_cols=194 Identities=11% Similarity=0.092 Sum_probs=100.5
Q ss_pred CCeEEEEeeCC-----CcEEEeecCCCe-----EEEEEcCC-cEEEEEEcCCceEEEEEcCCC---CeeEEEEecCCCeE
Q 011452 204 NGKVLTYSAQD-----SIYKVFDLKNYT-----MLYSISDK-NVQEIKISPGIMLLIFTKASG---HVPLKILSIEDGTV 269 (485)
Q Consensus 204 nG~~Las~s~D-----~tiKlWdl~~g~-----~l~tl~~~-~V~~VafSpg~~ll~sss~~~---D~tIklWdi~tG~~ 269 (485)
++++++.|+.+ ..+-++|+.+.+ .+..+... .-.+++.. ++.+.+.+..+. ...+.++|+.+++-
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL-GDMIYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE-CCEEEEEcccCCCcccceEEEEcCCCCeE
Confidence 67888888755 468888987765 22222211 11122222 344444433222 14688899888764
Q ss_pred EEEeecCCccee-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C--
Q 011452 270 LKSFNHLLHRNK-KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N-- 340 (485)
Q Consensus 270 L~tl~~~~~~~~-~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D-- 340 (485)
...-.-...+.. .+.. .++..++.|+.+ ..+.++|+.+.+-.+.-.-........+...++++++.++ +
T Consensus 141 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 218 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT 218 (301)
T ss_dssp EEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred EECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCC
Confidence 332111112221 2222 234444556543 5689999999876554211111111122334788888887 4
Q ss_pred ---CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 341 ---RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 341 ---~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
..|.++|.+...-..+.. ...+......+. -++++++-|+.+.. ..-..|-++|+.+.+-
T Consensus 219 ~~~~~v~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 219 AHLSSVEAYNIRTDSWTTVTS--MTTPRCYVGATV--LRGRLYAIAGYDGN------SLLSSIECYDPIIDSW 281 (301)
T ss_dssp SBCCCEEEEETTTTEEEEECC--CSSCCBSCEEEE--ETTEEEEECCBCSS------SBEEEEEEEETTTTEE
T ss_pred cccceEEEEeCCCCcEEECCC--CCCcccceeEEE--ECCEEEEEcCcCCC------cccccEEEEcCCCCeE
Confidence 368899986443334432 111122122233 37788888765200 0114688899887764
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=92.59 E-value=4.2 Score=42.91 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=82.7
Q ss_pred CCCCeEEEEeeCCCcEEEeecCC---CeEEEEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCe-------
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKN---YTMLYSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT------- 268 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~---g~~l~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~------- 268 (485)
..||.-|..+ +++.||.=++.. |+.+..= .-..|..+.+||.|.+|+-.. +.+|.|-.+..+.
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHH
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---CCeEEEEEecCccccCcccc
Confidence 3577776654 579999888773 3333221 123678899999666666543 3689998887443
Q ss_pred -----EEEEeec------CCcceeEEEEEec--CCCEEEEEeCCCcEEEEECCCC--eeEEeccc---------CCCceE
Q 011452 269 -----VLKSFNH------LLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRNF--ELTEVSRT---------EFMTPS 324 (485)
Q Consensus 269 -----~L~tl~~------~~~~~~~V~f~~~--~~~~lls~s~D~tIkIWDv~tg--~~~~~l~g---------h~~~v~ 324 (485)
..+++.- ....+.+|-|+|- .+..|++=-.|++||+||+... ++. ++.. +.+.|.
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~ 183 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDIT 183 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEE
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEE
Confidence 1234431 1345889999753 2567888789999999999963 223 3321 236677
Q ss_pred EEEEcCCCcEE
Q 011452 325 AFIFLYENQLF 335 (485)
Q Consensus 325 avaFspdg~ll 335 (485)
+++|.+++=.|
T Consensus 184 S~~Fg~~~lTL 194 (452)
T 3pbp_A 184 DLEFSKDGLTL 194 (452)
T ss_dssp EEEECTTSSCE
T ss_pred EEEEcCCCcEE
Confidence 88888766433
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.84 E-value=8.5 Score=36.19 Aligned_cols=195 Identities=13% Similarity=0.064 Sum_probs=99.9
Q ss_pred CCeEEEEeeCC-----CcEEEeecCCCeE--EEEEcCC-cEEEEEEcCCceEEEEEcCCCC--eeEEEEecCCCeEEEEe
Q 011452 204 NGKVLTYSAQD-----SIYKVFDLKNYTM--LYSISDK-NVQEIKISPGIMLLIFTKASGH--VPLKILSIEDGTVLKSF 273 (485)
Q Consensus 204 nG~~Las~s~D-----~tiKlWdl~~g~~--l~tl~~~-~V~~VafSpg~~ll~sss~~~D--~tIklWdi~tG~~L~tl 273 (485)
++++++.|+.+ ..+-++|+.+.+- +..+... .-.+++.-.+..+++++..... ..+.++|+++.+-...-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 140 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVA 140 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEEC
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecC
Confidence 67888888754 3577888887762 2222211 1112222245455544332211 46778898887643321
Q ss_pred ecCCccee-EEEEEecCCCEEEEEeC-------CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC---
Q 011452 274 NHLLHRNK-KVDFIEQFNEKLLVKQE-------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR--- 341 (485)
Q Consensus 274 ~~~~~~~~-~V~f~~~~~~~lls~s~-------D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~--- 341 (485)
.-...+.. .++. .++...+.|+. -..+.++|+.+.+-.+...-....-...+...++++++-++ ++
T Consensus 141 ~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~ 218 (302)
T 2xn4_A 141 PMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLV 218 (302)
T ss_dssp CCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSB
T ss_pred CCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcc
Confidence 11111111 2332 23444444543 24689999998876554211111111112234788888887 53
Q ss_pred --cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 342 --TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 342 --TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
.+.++|.+...-..+..... +...-..+ .-++++++-|+.+.. ..-..|-++|+.+.+-
T Consensus 219 ~~~~~~yd~~~~~W~~~~~~~~--~r~~~~~~--~~~~~i~v~GG~~~~------~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVADMNM--CRRNAGVC--AVNGLLYVVGGDDGS------CNLASVEYYNPTTDKW 279 (302)
T ss_dssp CCCEEEEETTTTEEEEECCCSS--CCBSCEEE--EETTEEEEECCBCSS------SBCCCEEEEETTTTEE
T ss_pred cceEEEEeCCCCCEeeCCCCCC--ccccCeEE--EECCEEEEECCcCCC------cccccEEEEcCCCCeE
Confidence 68889986444444432211 11111222 237788888775211 1125689999988764
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=3.3 Score=40.15 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=45.0
Q ss_pred CCceEEEEEcCCCcEEEEEeCCcEEEEeCCC-c-------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 320 FMTPSAFIFLYENQLFLTFRNRTVAVWNFRG-E-------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~sD~TIklWd~~G-~-------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
-..+..++|.|+|.+.+. +++. ||-.+. . -..+--|...|+. -..++|-|+|.+.++ +
T Consensus 40 w~~~~~laf~P~G~LYaV-~~G~--Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~---F~a~~fD~~G~LYav-~------- 105 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV-LNDK--IYKGTPPTHDNDNWMGRAKKIGNGGWNQ---FQFLFFDPNGYLYAV-S------- 105 (236)
T ss_dssp CTTCSEEEECTTSCEEEE-ETTE--EEEESCCCSTTCCHHHHCEEEECSCGGG---CSEEEECTTSCEEEE-E-------
T ss_pred cccceeEEECCCccEEEE-eCCe--EEEECCCCCCcccccccccEeccccccc---ceEEEECCCCCEEEe-C-------
Confidence 446779999999999988 7664 666431 1 0123333444521 478999999999999 4
Q ss_pred CCcCCCCeEEEEeC
Q 011452 392 LAEGNAGSINISNI 405 (485)
Q Consensus 392 ~~~~~DgtIklWdl 405 (485)
||.|.-|+-
T Consensus 106 -----dG~iyr~~p 114 (236)
T 1tl2_A 106 -----KDKLYKASP 114 (236)
T ss_dssp -----TTEEEEESC
T ss_pred -----CCEEEEeCC
Confidence 588866653
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=90.67 E-value=9.4 Score=43.55 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=28.3
Q ss_pred EEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE
Q 011452 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 197 ~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl 231 (485)
+++.. ++..+|.+-+.|+++|+|++.+|+|+.+.
T Consensus 240 ~~~~~-~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 240 SMIFL-STYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp EEEEE-TTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred EEeec-CCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 44554 46778888899999999999999999886
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=89.90 E-value=24 Score=38.08 Aligned_cols=257 Identities=8% Similarity=-0.033 Sum_probs=144.4
Q ss_pred ccceEEEEEe-cCEEEEEeCCCeEEeeecccCcEEEEee---cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 95 RSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 95 ~s~V~~i~~s-~~~ias~s~dgtiklW~~~tG~~l~tl~---g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.+.|.+|... ..+|=.+..+|..|. | |....... .-.+..|++++-.++|...+. . .+ -+
T Consensus 21 ~n~V~~I~qD~~G~lWigT~~GL~ry-D---G~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-T----~~-------Gl 84 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGSNKGLFSY-D---GYSTQQHFTYGENNNTRIYCGVIIDNTYLYMG-T----DN-------GI 84 (758)
T ss_dssp CCCEEEEEECTTSCEEEEESSCEEEE-C---SSCEEECSCTTSTTSSCEEEEEEETTTEEEEE-E----TT-------EE
T ss_pred cceEEEEEECCCCCEEEEECCCcccc-C---CCceEEEEccCCCCCceEEEEEEcCCCcEEEE-e----CC-------Ce
Confidence 4678888887 556666778998764 4 43333221 112456999999888876653 2 22 23
Q ss_pred EEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEE------EcCCcEEEEEEcCC
Q 011452 171 RIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS------ISDKNVQEIKISPG 244 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~t------l~~~~V~~VafSpg 244 (485)
-.+|..++++.. ........+..+.. .+|.+.+. ..+ -+-.+|.++++...- +....|.++...++
T Consensus 85 ~~yd~~~~~f~~----~~~~~~~~i~~i~~--~~g~lWig-t~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~ 156 (758)
T 3ott_A 85 LVYNYRADRYEQ----PETDFPTDVRTMAL--QGDTLWLG-ALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKD 156 (758)
T ss_dssp EEEETTTTEECC----CSCCCCSCEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTT
T ss_pred EEEeCCCCEEEC----cccCCCceEEEEEe--cCCcEEEE-cCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCC
Confidence 445544443311 00001122334443 36776664 334 466788877664322 22457999988866
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecC------CcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHL------LHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~------~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
+.+.++.. .-|-.+|..+++.. .+... ...+.++... .+++.|-++.. +-|-.+|..+++......-
T Consensus 157 g~lWigt~----~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d-~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l 229 (758)
T 3ott_A 157 NQIYVGTY----NGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLED-TTRQCVWIGTE-GYLFQYFPSTGQIKQTEAF 229 (758)
T ss_dssp CCEEEEET----TEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEE-TTTTEEEEEEE-EEEEEEETTTTEEEEEEEE
T ss_pred CCEEEEeC----CCHhhCccCCCceE-EecCCCccccccceeEEEEEE-CCCCEEEEEEC-CCCeEEcCCCCeEEeccCC
Confidence 66655532 24777888777643 22211 0124455432 33455566554 4588899988765432211
Q ss_pred CCCceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEeecCC---CCCCCCCeeEEEECCCCCEEEEE
Q 011452 319 EFMTPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSFEDHL---LWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 319 h~~~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl~gH~---~~~~~~~v~svafSpDG~~LaS~ 383 (485)
....|.+++..++|.+.+.. ++-+-++|.+...+..+.... ..-+...|.+|+..++|.+-+..
T Consensus 230 ~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWiGT 296 (758)
T 3ott_A 230 HNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWLGT 296 (758)
T ss_dssp EEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEEEe
Confidence 23458888888899988765 445777887633333332111 00112238999999999887754
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=89.90 E-value=1.1 Score=51.16 Aligned_cols=37 Identities=11% Similarity=0.285 Sum_probs=33.7
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
+.+++.++|..+|++-|. |+++||||+.||+|+++..
T Consensus 238 ~~~~~~~~~~~~lftl~~-----------D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 238 IISMIFLSTYNVLVMLSL-----------DYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp EEEEEEETTTTEEEEEET-----------TCEEEEEETTTTEEEEEEE
T ss_pred EEEEeecCCCcEEEEEEC-----------CCEEEEEECCCCCeEeeec
Confidence 678888999999999997 7999999999999999864
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.82 E-value=13 Score=34.92 Aligned_cols=193 Identities=8% Similarity=0.017 Sum_probs=95.0
Q ss_pred CeEEEEeeC--CCcEEEeecCCCeEE--EEEcCCc-EEEEEEcCCceEEEEEcCC--CCeeEEEEecCCCeEEEEeecCC
Q 011452 205 GKVLTYSAQ--DSIYKVFDLKNYTML--YSISDKN-VQEIKISPGIMLLIFTKAS--GHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 205 G~~Las~s~--D~tiKlWdl~~g~~l--~tl~~~~-V~~VafSpg~~ll~sss~~--~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+.+++.|+. ...+.++|..+.+-. ..+.... =.+++.-.+. +.+.+..+ .-..+.++|+.+++-...-.-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEECCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 445555543 356777887776622 1222111 0112222344 44443321 12567888998876433221111
Q ss_pred ccee-EEEEEecCCCEEEEEeCC------CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C---------
Q 011452 278 HRNK-KVDFIEQFNEKLLVKQEN------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N--------- 340 (485)
Q Consensus 278 ~~~~-~V~f~~~~~~~lls~s~D------~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D--------- 340 (485)
.+.. .++. .++..++.|+.+ ..+.++|+.+.+-.+...-........+...++++++-++ +
T Consensus 91 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~ 168 (306)
T 3ii7_A 91 PRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVL 168 (306)
T ss_dssp CCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEEC
T ss_pred cccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCccccc
Confidence 1221 2222 234444556654 5689999999876554221111111112234888888776 3
Q ss_pred CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 341 RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 341 ~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
..+.++|.....-..+..- ..+...-..+.+ ++++++.|+.+.. ..-..|.++|+.+++-
T Consensus 169 ~~~~~yd~~~~~W~~~~~~--p~~r~~~~~~~~--~~~i~v~GG~~~~------~~~~~~~~yd~~~~~W 228 (306)
T 3ii7_A 169 NSCEVYDPATETWTELCPM--IEARKNHGLVFV--KDKIFAVGGQNGL------GGLDNVEYYDIKLNEW 228 (306)
T ss_dssp CCEEEEETTTTEEEEECCC--SSCCBSCEEEEE--TTEEEEECCEETT------EEBCCEEEEETTTTEE
T ss_pred ceEEEeCCCCCeEEECCCc--cchhhcceEEEE--CCEEEEEeCCCCC------CCCceEEEeeCCCCcE
Confidence 3478889864444444321 111111122222 7788887765210 0124688999988754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.79 E-value=13 Score=34.80 Aligned_cols=221 Identities=9% Similarity=0.021 Sum_probs=106.1
Q ss_pred CeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC---cCcccceeeecc
Q 011452 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK---PDAGFALFESES 191 (485)
Q Consensus 115 gtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~---~~~~~~lf~~~~ 191 (485)
..+..+|..+++-. .+..-+.......+..-++..++.++.++. -....+.++|+.+++ ...-..+- . .
T Consensus 31 ~~~~~~d~~~~~W~-~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-----~~~~~~~~~d~~~~~~~~W~~~~~~p-~-~ 102 (301)
T 2vpj_A 31 DVVEKYDPKTQEWS-FLPSITRKRRYVASVSLHDRIYVIGGYDGR-----SRLSSVECLDYTADEDGVWYSVAPMN-V-R 102 (301)
T ss_dssp CCEEEEETTTTEEE-ECCCCSSCCBSCEEEEETTEEEEECCBCSS-----CBCCCEEEEETTCCTTCCCEEECCCS-S-C
T ss_pred eEEEEEcCCCCeEE-eCCCCChhhccccEEEECCEEEEEcCCCCC-----ccCceEEEEECCCCCCCeeEECCCCC-C-C
Confidence 36778887766522 222111111111122245666655443211 122356677776666 31100000 0 1
Q ss_pred ccCceEEEEeCCCCeEEEEeeCC-----CcEEEeecCCCe--EEEEEcCCc-EEEEEEcCCceEEEEEcCCC---CeeEE
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYT--MLYSISDKN-VQEIKISPGIMLLIFTKASG---HVPLK 260 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D-----~tiKlWdl~~g~--~l~tl~~~~-V~~VafSpg~~ll~sss~~~---D~tIk 260 (485)
.... .++. .++++++.|+.+ ..+-++|+.+.+ .+..+.... -.+++...+ .+.+.+..+. -..+.
T Consensus 103 r~~~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 103 RGLA-GATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASG-VIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp CBSC-EEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETT-EEEEECCBCSSCBCCCEE
T ss_pred ccce-eEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECC-EEEEECCCCCCcccceEE
Confidence 1111 2333 268999988754 357788888776 233333211 112222244 4444433221 25688
Q ss_pred EEecCCCeEEEEeecCCccee-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE
Q 011452 261 ILSIEDGTVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL 334 (485)
Q Consensus 261 lWdi~tG~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l 334 (485)
++|+++++-...-.-...+.. .+.. .++..++.|+.+ ..+.++|+.+.+-.+...-........+...++++
T Consensus 179 ~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i 256 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRL 256 (301)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEE
T ss_pred EEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEECCEE
Confidence 899988765432111111111 2222 234444556543 57999999998766553211111111223348888
Q ss_pred EEEEe-C-----CcEEEEeCC
Q 011452 335 FLTFR-N-----RTVAVWNFR 349 (485)
Q Consensus 335 laS~s-D-----~TIklWd~~ 349 (485)
++-++ + ..|.++|.+
T Consensus 257 ~v~GG~~~~~~~~~v~~yd~~ 277 (301)
T 2vpj_A 257 YAIAGYDGNSLLSSIECYDPI 277 (301)
T ss_dssp EEECCBCSSSBEEEEEEEETT
T ss_pred EEEcCcCCCcccccEEEEcCC
Confidence 88887 5 357778875
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.85 E-value=16 Score=34.42 Aligned_cols=194 Identities=8% Similarity=-0.010 Sum_probs=101.4
Q ss_pred CCeEEEEeeCC----CcEEEeecCCCeE--EEEEcCCcE-EEEEEcCCceEEEEEcCC----CCeeEEEEecCCCeEEEE
Q 011452 204 NGKVLTYSAQD----SIYKVFDLKNYTM--LYSISDKNV-QEIKISPGIMLLIFTKAS----GHVPLKILSIEDGTVLKS 272 (485)
Q Consensus 204 nG~~Las~s~D----~tiKlWdl~~g~~--l~tl~~~~V-~~VafSpg~~ll~sss~~----~D~tIklWdi~tG~~L~t 272 (485)
++++++.|+.+ ..+-++|+.+.+- +..++.... .+++...+ .+.+.+..+ .-..+-++|+++.+-...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~ 133 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEG-KIYTSGGSEVGNSALYLFECYDTRTESWHTK 133 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEETT-EEEEECCBBTTBSCCCCEEEEETTTTEEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEECC-EEEEECCCCCCCcEeeeEEEEeCCCCceEeC
Confidence 68888888865 6778889888763 223322111 11222244 444443322 124688899988764332
Q ss_pred eecCCccee-EEEEEecCCCEEEEEeC---------CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-C-
Q 011452 273 FNHLLHRNK-KVDFIEQFNEKLLVKQE---------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-N- 340 (485)
Q Consensus 273 l~~~~~~~~-~V~f~~~~~~~lls~s~---------D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D- 340 (485)
-.-...+.. .++. .++...+.++. -..+.++|+.+.+-.+...-........+...++++++-|+ +
T Consensus 134 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~ 211 (306)
T 3ii7_A 134 PSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNG 211 (306)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred CCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCC
Confidence 111111111 2222 23333444542 35589999999876555321111111122333888888876 4
Q ss_pred ----CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 341 ----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 341 ----~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
..|.++|.....-..+.. ...+......+.+ ++++++.|+.+. .+.-..|.++|+.+.+-
T Consensus 212 ~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~--~~~i~v~GG~~~------~~~~~~~~~yd~~~~~W 275 (306)
T 3ii7_A 212 LGGLDNVEYYDIKLNEWKMVSP--MPWKGVTVKCAAV--GSIVYVLAGFQG------VGRLGHILEYNTETDKW 275 (306)
T ss_dssp TEEBCCEEEEETTTTEEEECCC--CSCCBSCCEEEEE--TTEEEEEECBCS------SSBCCEEEEEETTTTEE
T ss_pred CCCCceEEEeeCCCCcEEECCC--CCCCccceeEEEE--CCEEEEEeCcCC------CeeeeeEEEEcCCCCeE
Confidence 367888986443333322 1111111223333 778888887521 01235789999988764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=88.47 E-value=17 Score=34.40 Aligned_cols=192 Identities=11% Similarity=0.003 Sum_probs=98.7
Q ss_pred CCeEEEEeeC----C-----CcEEEeecCCCeEE--EEEcCC--cEEEEEEcCCceEEEEEcCCC---CeeEEEEecCCC
Q 011452 204 NGKVLTYSAQ----D-----SIYKVFDLKNYTML--YSISDK--NVQEIKISPGIMLLIFTKASG---HVPLKILSIEDG 267 (485)
Q Consensus 204 nG~~Las~s~----D-----~tiKlWdl~~g~~l--~tl~~~--~V~~VafSpg~~ll~sss~~~---D~tIklWdi~tG 267 (485)
++++++.|+. + ..+-++|+.+.+-. ..+... .-..+. ..+.++++. ..+. -..+.++|+++.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G-G~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGV-IDGHIYAVG-GSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEE-ETTEEEEEC-CEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEE-ECCEEEEEc-CCCCCcccccEEEECCCCC
Confidence 5778887775 2 46778888776622 122211 111222 244444433 2111 146788898887
Q ss_pred eEEEEeecCCccee-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEecc--cCCCceEEEEEcCCCcEEEEEe
Q 011452 268 TVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFELTEVSR--TEFMTPSAFIFLYENQLFLTFR 339 (485)
Q Consensus 268 ~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~~~~~l~--gh~~~v~avaFspdg~llaS~s 339 (485)
+-...-.-...+.. .++. .++..++.|+.+ ..+.++|+.+.+-..... ..-....++. .++++++-++
T Consensus 148 ~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG 223 (308)
T 1zgk_A 148 EWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGG 223 (308)
T ss_dssp EEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECC
T ss_pred eEeECCCCCccccceEEEE--ECCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeC
Confidence 64332111111111 2222 234444556543 568999999887654421 1111122232 3888888886
Q ss_pred -C-----CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 340 -N-----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 340 -D-----~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
+ ..+.++|+....-..+.. ...+......+. -++++++-|+.+. ...-..|-++|+.+.+-.
T Consensus 224 ~~~~~~~~~v~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~~~~i~v~GG~~~------~~~~~~v~~yd~~~~~W~ 291 (308)
T 1zgk_A 224 YDGQDQLNSVERYDVETETWTFVAP--MKHRRSALGITV--HQGRIYVLGGYDG------HTFLDSVECYDPDTDTWS 291 (308)
T ss_dssp BCSSSBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEE--ETTEEEEECCBCS------SCBCCEEEEEETTTTEEE
T ss_pred CCCCCccceEEEEeCCCCcEEECCC--CCCCccceEEEE--ECCEEEEEcCcCC------CcccceEEEEcCCCCEEe
Confidence 5 468899986444444432 111111112222 3778888877521 011357889999887643
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.01 E-value=9.6 Score=39.89 Aligned_cols=113 Identities=11% Similarity=0.065 Sum_probs=67.2
Q ss_pred EEEEeecCCcceeEEEEEecCCC-EEEEEeCCCcEEEEECCCCe---eEEecc-----c----CCCceEEEEEcCC----
Q 011452 269 VLKSFNHLLHRNKKVDFIEQFNE-KLLVKQENENLQILDVRNFE---LTEVSR-----T----EFMTPSAFIFLYE---- 331 (485)
Q Consensus 269 ~L~tl~~~~~~~~~V~f~~~~~~-~lls~s~D~tIkIWDv~tg~---~~~~l~-----g----h~~~v~avaFspd---- 331 (485)
.+.++..-+..-+.++|. |++. +|+++...+.|++++..... .+..+. + ....+..++|.|+
T Consensus 5 ~v~~va~gL~~P~~~a~~-pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n 83 (463)
T 2wg3_C 5 CIQEVVSGLRQPVGALHS-GDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKN 83 (463)
T ss_dssp EEEEEEEEESSEEEEECC-SSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHH
T ss_pred EEEEeccCCCCceEEEEC-CCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCC
Confidence 334443323456788986 5664 68888889999999864321 111111 1 1346788999996
Q ss_pred CcEEEEEe-CC------------cEEEEeCC-C----------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 332 NQLFLTFR-NR------------TVAVWNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 332 g~llaS~s-D~------------TIklWd~~-G----------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+.+.++-+ +. .|.-|.+. + +.|.++......| . ...|+|.|||.+.++-+.
T Consensus 84 ~~lYv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H-~--g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 84 GKLYVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKH-L--GGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CEEEEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSS-C--EEEEEECTTSCEEEEECC
T ss_pred CEEEEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcc-c--CCcEeECCCCcEEEEeCC
Confidence 78888765 21 23335442 1 2333443111112 1 578999999999998764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.73 E-value=21 Score=33.47 Aligned_cols=194 Identities=10% Similarity=0.009 Sum_probs=94.7
Q ss_pred CeEEEEeeCC----CcEEEeecCCCeEEE--EEcCCcE-EEEEEcCCceEEEEEcCCC---CeeEEEEecCCCeEEEEee
Q 011452 205 GKVLTYSAQD----SIYKVFDLKNYTMLY--SISDKNV-QEIKISPGIMLLIFTKASG---HVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 205 G~~Las~s~D----~tiKlWdl~~g~~l~--tl~~~~V-~~VafSpg~~ll~sss~~~---D~tIklWdi~tG~~L~tl~ 274 (485)
+++++.|+.+ ..+..+|+.+.+-.. .++.... .+++...+ .+.+.+..+. -..+.++|..+++-...-.
T Consensus 16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~-~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~ 94 (302)
T 2xn4_A 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAG-LVFAVGGFNGSLRVRTVDSYDPVKDQWTSVAN 94 (302)
T ss_dssp EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETT-EEEEESCBCSSSBCCCEEEEETTTTEEEEECC
T ss_pred CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEECC-EEEEEeCcCCCccccceEEECCCCCceeeCCC
Confidence 4566666543 356778877765211 1221110 12222244 4444433221 1467889988876433211
Q ss_pred cCCccee-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CC------
Q 011452 275 HLLHRNK-KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NR------ 341 (485)
Q Consensus 275 ~~~~~~~-~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~------ 341 (485)
-...+.. .++. .++..++.|+.+ ..+.++|+.+.+-.+...-........+...++++++-|+ ++
T Consensus 95 ~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 172 (302)
T 2xn4_A 95 MRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCL 172 (302)
T ss_dssp CSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTEEC
T ss_pred CCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCccc
Confidence 1111111 2322 234445556644 3578899998876554211111111112234788888776 32
Q ss_pred -cEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 342 -TVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 342 -TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
.+.++|.....-..+.. ...+......++ -++++++.|+.+.. ..-..+.++|+.+++-.
T Consensus 173 ~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~--~~~~iyv~GG~~~~------~~~~~~~~yd~~~~~W~ 233 (302)
T 2xn4_A 173 STVECYNATTNEWTYIAE--MSTRRSGAGVGV--LNNLLYAVGGHDGP------LVRKSVEVYDPTTNAWR 233 (302)
T ss_dssp CCEEEEETTTTEEEEECC--CSSCCBSCEEEE--ETTEEEEECCBSSS------SBCCCEEEEETTTTEEE
T ss_pred cEEEEEeCCCCcEEECCC--CccccccccEEE--ECCEEEEECCCCCC------cccceEEEEeCCCCCEe
Confidence 47888886433333321 111111112222 37788888775210 11256899999887653
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=84.88 E-value=44 Score=35.55 Aligned_cols=198 Identities=16% Similarity=0.200 Sum_probs=108.6
Q ss_pred CCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEE-cCCceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCCc
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLH 278 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~Vaf-Spg~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~~ 278 (485)
.|..++||-=+ ..++.|+|+++-+.+.+.. .+.|.=-+| ||...-+++ +..|.-|+++. -.+.+-|.-|..
T Consensus 74 nP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~lVT-----~taVyHWsi~~~s~P~kvFdR~~~ 147 (494)
T 1bpo_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVT-----DNAVYHWSMEGESQPVKMFDRHSS 147 (494)
T ss_dssp CSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEEEEC-----SSEEEEEESSSSCCCEEEEECCGG
T ss_pred CCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCCeEEEEc-----CCeeEEecccCCCCchhheecchh
Confidence 47788888776 7899999999998887764 333333333 344333333 15899999963 356777764422
Q ss_pred --ceeEEEEEe-cCCCEEEE-E--e----CCCcEEEEECCCCeeEEecccCCCceEEEEEc--CC-CcEEEEEeC----C
Q 011452 279 --RNKKVDFIE-QFNEKLLV-K--Q----ENENLQILDVRNFELTEVSRTEFMTPSAFIFL--YE-NQLFLTFRN----R 341 (485)
Q Consensus 279 --~~~~V~f~~-~~~~~lls-~--s----~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFs--pd-g~llaS~sD----~ 341 (485)
...=+.+.. ++..-++. | + -.|.++|+.++. +.-+.+.||...--.+.+. +. .++|+-+.. +
T Consensus 148 L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~ 226 (494)
T 1bpo_A 148 LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGG 226 (494)
T ss_dssp GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCC
T ss_pred cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCc
Confidence 222344432 33333332 2 2 347899999994 4556777886433222221 11 133333322 4
Q ss_pred cEEEEeCC----CcE---EEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 342 TVAVWNFR----GEL---VTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 342 TIklWd~~----G~l---l~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
.+.|-++. |.. .+..+ --.....|- =-++.+|+.-..|---.+ -|.|-|+|++||.|+.
T Consensus 227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DF-Pvamqvs~kygviyviTK-----------~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDF-PVAMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCC-EEEEEEETTTTEEEEEET-----------TSEEEEEETTTCCEEE
T ss_pred EEEEEEcCCCccCCCCccceeeeeeCCcccccCc-eeEEEecccCCEEEEEec-----------CceEEEEecccceeee
Confidence 55555541 110 00000 000000111 135556666665555555 5999999999999998
Q ss_pred EecCCC
Q 011452 413 KIRASN 418 (485)
Q Consensus 413 tl~gH~ 418 (485)
.-+-.+
T Consensus 295 ~nrIs~ 300 (494)
T 1bpo_A 295 MNRISG 300 (494)
T ss_dssp EEECCS
T ss_pred eecccC
Confidence 765443
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.64 E-value=11 Score=37.98 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=65.2
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcCC---cEEEEE-Ec-C-CceEEEEEcCCCCeeEEEEecCCCeEEEEeecC-Ccce
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIK-IS-P-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL-LHRN 280 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~~---~V~~Va-fS-p-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~-~~~~ 280 (485)
+.-++.|+.+.-.|.++|+.+-++... .+.... .. + ++..++... ..|+.|..++.++|.....+.-. +-..
T Consensus 13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p-~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 13 LIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP-FGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC-STTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE-CCCCEEEEEECCCCcEEeeeccccceec
Confidence 344567888888888888888777532 211110 00 1 223333311 23478888888888666555410 0001
Q ss_pred eEEEEE------e----cCCCEEEEEeCCCcEEEEECCCCeeEEeccc
Q 011452 281 KKVDFI------E----QFNEKLLVKQENENLQILDVRNFELTEVSRT 318 (485)
Q Consensus 281 ~~V~f~------~----~~~~~lls~s~D~tIkIWDv~tg~~~~~l~g 318 (485)
..+.+. . ..++.+.+++.++++--.|++||+.+..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp CSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred cccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 112210 0 0467888999999999999999999888753
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=82.99 E-value=5.7 Score=43.42 Aligned_cols=101 Identities=13% Similarity=-0.011 Sum_probs=66.7
Q ss_pred cEEEEECCC----CeeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC-------CcE-------EEEeecCC
Q 011452 301 NLQILDVRN----FELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR-------GEL-------VTSFEDHL 360 (485)
Q Consensus 301 tIkIWDv~t----g~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~-------G~l-------l~tl~gH~ 360 (485)
.|++.|.+. +..+..+..-...+-.+-++|||++++.++ +.||-+.|++ +++ +...+--.
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~Gl 378 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGL 378 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCS
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCC
Confidence 588999886 332222212233455578899999998887 9999999975 222 33333111
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC----------eEEEEecCCC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG----------KCLAKIRASN 418 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG----------k~l~tl~gH~ 418 (485)
. -.-.+|.++| ..-+... -|..|--||+... ..+.++.-|.
T Consensus 379 G------PlHt~Fd~~G-~aYTtlf----------idSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Y 429 (638)
T 3sbq_A 379 G------PLHTTFDGRG-NAYTTLF----------IDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHY 429 (638)
T ss_dssp C------EEEEEECSSS-EEEEEET----------TTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSS
T ss_pred c------ccEEEECCCC-ceEeeee----------ecceEEEEeccHHHHHhcCccCCeeeecccccc
Confidence 1 4678999999 4444443 2688999999864 5777887665
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=82.69 E-value=6.8 Score=37.91 Aligned_cols=126 Identities=12% Similarity=0.078 Sum_probs=66.7
Q ss_pred CEEEEEeCCCeEEeeecccCc------EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 106 DIVFALAQSGVCAAFCRETNQ------RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~------~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
-+|+...+| ++..=...++. ++.++-..-=..+..+||+|||.+-+. + .+ +|+.+....
T Consensus 5 ~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV-~----~G---------~Ly~~~~~t 69 (236)
T 1tl2_A 5 SMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV-L----ND---------KIYKGTPPT 69 (236)
T ss_dssp CCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE-E----TT---------EEEEESCCC
T ss_pred eEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE-e----CC---------eEEEECCCC
Confidence 456666666 55543333333 222332200125779999999996655 3 22 255543211
Q ss_pred cCcccceeeec----cccCc--eEEEEeCCCCeEEEEeeCCCcEEEeecCC-CeE--E---EEEcC---CcEEEEEEcCC
Q 011452 180 PDAGFALFESE----SLKWP--GFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTM--L---YSISD---KNVQEIKISPG 244 (485)
Q Consensus 180 ~~~~~~lf~~~----~~~~~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~-g~~--l---~tl~~---~~V~~VafSpg 244 (485)
.+.+..|..+ ..+|- .++.|+ |||.+.++ .|+.|.=|+-.+ +.- + ..+.+ ..+..|.|.|+
T Consensus 70 -~~~~~W~~s~t~IG~~Gw~~F~a~~fD-~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~ 145 (236)
T 1tl2_A 70 -HDNDNWMGRAKKIGNGGWNQFQFLFFD-PNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPN 145 (236)
T ss_dssp -STTCCHHHHCEEEECSCGGGCSEEEEC-TTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTT
T ss_pred -CCcccccccccEecccccccceEEEEC-CCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCC
Confidence 1112233321 11222 368897 89998887 568776667533 111 0 11111 46889999998
Q ss_pred ceEEEE
Q 011452 245 IMLLIF 250 (485)
Q Consensus 245 ~~ll~s 250 (485)
+.|-+.
T Consensus 146 G~Lyav 151 (236)
T 1tl2_A 146 GYLYAV 151 (236)
T ss_dssp SCEEEE
T ss_pred ceEEEE
Confidence 877655
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=82.30 E-value=26 Score=42.36 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=100.9
Q ss_pred CCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC-CeEEEEeecCC--
Q 011452 202 DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED-GTVLKSFNHLL-- 277 (485)
Q Consensus 202 ~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t-G~~L~tl~~~~-- 277 (485)
.|..++||-=+ ..++.|+|+.+-+.+.+.. ...|.=-+|=...+|+.-.. ..|.-|++++ -.+.+-|.-|.
T Consensus 74 nP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~lVT~----~aVyHW~~~~~s~P~k~fdR~~~L 148 (1630)
T 1xi4_A 74 NPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVALVTD----NAVYHWSMEGESQPVKMFDRHSSL 148 (1630)
T ss_pred CCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecCCCeeEEEcC----CeEEEeccCCCCccHHHHhcchhc
Confidence 36778888766 7899999998877766553 33443334443334433311 4799999963 24455554331
Q ss_pred cceeEEEEEe-cCCCEEEE-E------eCCCcEEEEECCCCeeEEecccCCCceEEEEE---cCCCcEEEEEeC----Cc
Q 011452 278 HRNKKVDFIE-QFNEKLLV-K------QENENLQILDVRNFELTEVSRTEFMTPSAFIF---LYENQLFLTFRN----RT 342 (485)
Q Consensus 278 ~~~~~V~f~~-~~~~~lls-~------s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF---spdg~llaS~sD----~T 342 (485)
....=|.+.. ++..-++. | .-.|.++|+.++. +..+.+.||...--.+.+ .+..++|.-+.. +.
T Consensus 149 ~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~k 227 (1630)
T 1xi4_A 149 AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGK 227 (1630)
T ss_pred ccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhHhHhhhheeccCCCCCCceEEEEEEecCCCce
Confidence 1112233322 33333332 2 1458999999994 445667788654433333 222333332222 35
Q ss_pred EEEEeCC-C-cEEEEeecCC-------CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 343 VAVWNFR-G-ELVTSFEDHL-------LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 343 IklWd~~-G-~ll~tl~gH~-------~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
+.|=++. . .--..|..-. ....|-. .++.+|+.-..|.--++ -|.|-+.|+.||.|+..
T Consensus 228 Lhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfp-v~~~vs~k~g~iy~itk-----------~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 228 LHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP-VAMQISEKHDVVFLITK-----------YGYIHLYDLETGTCIYM 295 (1630)
T ss_pred EEEEecCCCccCCCCCccccccccCCcccccCcc-eEEEeccccCEEEEEec-----------CceEEEEecccchhhhh
Confidence 5555541 1 0000110000 0000111 23444554444444444 48999999999999865
Q ss_pred ec
Q 011452 414 IR 415 (485)
Q Consensus 414 l~ 415 (485)
=+
T Consensus 296 ~r 297 (1630)
T 1xi4_A 296 NR 297 (1630)
T ss_pred cc
Confidence 44
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=80.19 E-value=40 Score=31.77 Aligned_cols=195 Identities=9% Similarity=0.006 Sum_probs=97.2
Q ss_pred CCCeEEEEeeC----CCcEEEeecCCCeEEE--EEcCC-cEEEEEEcCCceEEEEEcC---CC---CeeEEEEecCCCeE
Q 011452 203 VNGKVLTYSAQ----DSIYKVFDLKNYTMLY--SISDK-NVQEIKISPGIMLLIFTKA---SG---HVPLKILSIEDGTV 269 (485)
Q Consensus 203 pnG~~Las~s~----D~tiKlWdl~~g~~l~--tl~~~-~V~~VafSpg~~ll~sss~---~~---D~tIklWdi~tG~~ 269 (485)
.++++++.|+. -..+.++|+.+.+-.. .++.. .-.+++...+..++..+.. +. ...+.++|+.+.+-
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W 102 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW 102 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence 35677777763 2467788887766321 22211 1112222244444433210 11 13578889888764
Q ss_pred EEEeecCCccee-EEEEEecCCCEEEEEeCC-----CcEEEEECCCCeeEEecccC--CCceEEEEEcCCCcEEEEEe-C
Q 011452 270 LKSFNHLLHRNK-KVDFIEQFNEKLLVKQEN-----ENLQILDVRNFELTEVSRTE--FMTPSAFIFLYENQLFLTFR-N 340 (485)
Q Consensus 270 L~tl~~~~~~~~-~V~f~~~~~~~lls~s~D-----~tIkIWDv~tg~~~~~l~gh--~~~v~avaFspdg~llaS~s-D 340 (485)
...-.-...+.. .++. .++..++.|+.+ ..+.++|+.+.+-.+...-. -....++. .++++++-|+ +
T Consensus 103 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 178 (308)
T 1zgk_A 103 SPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFD 178 (308)
T ss_dssp EECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBC
T ss_pred eECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE--ECCEEEEEeCCC
Confidence 322111111111 2222 234444455532 57899999988765542111 11112232 3788888876 4
Q ss_pred -----CcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 341 -----RTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 341 -----~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
..+.++|.....-..+.. ...+...-..+.+ ++++++-|+.+. ...-..+.++|+.+.+-.
T Consensus 179 ~~~~~~~~~~yd~~~~~W~~~~~--~p~~r~~~~~~~~--~~~iyv~GG~~~------~~~~~~v~~yd~~~~~W~ 244 (308)
T 1zgk_A 179 GTNRLNSAECYYPERNEWRMITA--MNTIRSGAGVCVL--HNCIYAAGGYDG------QDQLNSVERYDVETETWT 244 (308)
T ss_dssp SSCBCCCEEEEETTTTEEEECCC--CSSCCBSCEEEEE--TTEEEEECCBCS------SSBCCCEEEEETTTTEEE
T ss_pred CCCcCceEEEEeCCCCeEeeCCC--CCCccccceEEEE--CCEEEEEeCCCC------CCccceEEEEeCCCCcEE
Confidence 358888886443333332 1111221223333 778888876521 011357899999887643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 485 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 100.0 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.97 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.97 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.96 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.96 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.95 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.93 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.91 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.91 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.9 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.89 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.79 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.78 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.78 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.74 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.68 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.52 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.5 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.38 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.37 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.29 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.28 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.24 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 99.19 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.15 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.13 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.09 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.95 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.93 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.84 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.82 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.81 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.8 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.69 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.52 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.26 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.68 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.64 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.63 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.57 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.5 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.46 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.25 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.12 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.01 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 96.89 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 96.64 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 96.61 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.2 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 96.12 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 95.7 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 95.55 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 95.54 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.85 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.82 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 94.38 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 93.95 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.94 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 93.42 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.72 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 90.72 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 90.72 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-47 Score=351.74 Aligned_cols=293 Identities=15% Similarity=0.263 Sum_probs=258.9
Q ss_pred EeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceE
Q 011452 118 AAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF 197 (485)
Q Consensus 118 klW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~ 197 (485)
|.|... .....+|.| |...|.+|+|+|+|++|||+|. | ++++||++.+|++.. .|. .+...+..
T Consensus 1 k~w~p~-~~~~~~L~G-H~~~I~~l~~sp~~~~l~s~s~----D------g~i~iWd~~~~~~~~---~~~-~h~~~V~~ 64 (317)
T d1vyhc1 1 KEWIPR-PPEKYALSG-HRSPVTRVIFHPVFSVMVSASE----D------ATIKVWDYETGDFER---TLK-GHTDSVQD 64 (317)
T ss_dssp CCCCCC-SSCSCEEEC-CSSCEEEEEECSSSSEEEEEES----S------SCEEEEETTTCCCCE---EEC-CCSSCEEE
T ss_pred CccCCC-CCccEEEcC-CCCCeEEEEEcCCCCEEEEEeC----C------CeEEEEECCCCCEEE---EEe-CCCCcEEE
Confidence 467544 666678988 8889999999999999999874 4 599999999998743 333 24566778
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~ 275 (485)
++|+ |++.+++++..++++.+|+....+....+. ...+..+.|+|++..+++.+ .|+++++||+++|+.+.++.+
T Consensus 65 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~ 141 (317)
T d1vyhc1 65 ISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS--RDKTIKMWEVQTGYCVKTFTG 141 (317)
T ss_dssp EEEC-TTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTCCEEEEEEC
T ss_pred Eeee-cccccccccccccccccccccccccccccccccccceeeeccCCCceEEeec--cCcceeEeecccceeeeEEcc
Confidence 9998 799999999999999999999888776664 46899999998665555544 458999999999999999999
Q ss_pred CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCC--------------------cEE
Q 011452 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYEN--------------------QLF 335 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg--------------------~ll 335 (485)
|...+..++|. +++..+++++.|++|++||+.+++++..+.+|...+..+.|+|++ .++
T Consensus 142 ~~~~~~~~~~~-~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (317)
T d1vyhc1 142 HREWVRMVRPN-QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 220 (317)
T ss_dssp CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CCCcceeeecc-cCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCcee
Confidence 99999999996 678888889999999999999999999999999999999998875 468
Q ss_pred EEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 336 LTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 336 aS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
++++ |++|++||++ |+++.++.+|... |.+++|+|+|++||+++. ||+|+|||+.+++++++
T Consensus 221 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~ 284 (317)
T d1vyhc1 221 LSGSRDKTIKMWDVSTGMCLMTLVGHDNW-----VRGVLFHSGGKFILSCAD-----------DKTLRVWDYKNKRCMKT 284 (317)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSC-----EEEEEECSSSSCEEEEET-----------TTEEEEECCTTSCCCEE
T ss_pred EeccCCCEEEEEECCCCcEEEEEeCCCCC-----EEEEEECCCCCEEEEEEC-----------CCeEEEEECCCCcEEEE
Confidence 8888 9999999996 9999999999987 999999999999999987 79999999999999999
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
|.+|.+ .|++|+|+|||+.|||||.||+|+|||
T Consensus 285 ~~~h~~--------------------------------------~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 285 LNAHEH--------------------------------------FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EECCSS--------------------------------------CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EcCCCC--------------------------------------CEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999973 899999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-45 Score=358.87 Aligned_cols=288 Identities=11% Similarity=0.094 Sum_probs=244.9
Q ss_pred cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeC
Q 011452 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDD 202 (485)
Q Consensus 124 tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~ 202 (485)
+.+.+.++ .|.+.|.+|+|||+|++|||++ ++ +++||++..++.......+.. ++...+.+|+|+
T Consensus 41 ~~~~~~~~--~H~~~V~~v~fs~~g~~latg~----dg-------~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s- 106 (337)
T d1gxra_ 41 HARQINTL--NHGEVVCAVTISNPTRHVYTGG----KG-------CVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLL- 106 (337)
T ss_dssp EEEEEEEE--CCSSCCCEEEECSSSSEEEEEC----BS-------EEEEEETTSTTCCSCSEEEECSCTTSBEEEEEEC-
T ss_pred CceEEEEC--CCCCcEEEEEECCCCCEEEEEE----CC-------EEEEEEccCCcccceeEEeeecCCCCcEEEEEEc-
Confidence 34667777 4888999999999999999854 33 899999977654322222221 344567789998
Q ss_pred CCCeEEEEeeCCCcEEEeecCCC--eEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 203 VNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 203 pnG~~Las~s~D~tiKlWdl~~g--~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
|||++|++++.|++|+|||+... ++...+. ...|..++|+|++.++++++ .|.+|++|+++++++...+.+|..
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~d~~i~~~~~~~~~~~~~~~~~~~ 184 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTD 184 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCCEEEEeecccccccccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccc
Confidence 79999999999999999998754 4556664 45799999999777776654 448999999999999999999999
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
.+..++|+ +++..+++++.|++|++||++++++++.+ .|...|.+++|+|++++|++++ |+.|++||++ +++. ..
T Consensus 185 ~v~~l~~s-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~ 261 (337)
T d1gxra_ 185 GASCIDIS-NDGTKLWTGGLDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QL 261 (337)
T ss_dssp CEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EE
T ss_pred cccccccc-ccccccccccccccccccccccceeeccc-ccccceEEEEEcccccccceeccccccccccccccccc-cc
Confidence 99999996 67889999999999999999999998887 5788999999999999999999 9999999997 5554 56
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
..|... |.+++|+|||++|++++. ||+|+|||+.+|+++.++. |.+
T Consensus 262 ~~~~~~-----i~~v~~s~~g~~l~s~s~-----------Dg~i~iwd~~~~~~~~~~~-~~~----------------- 307 (337)
T d1gxra_ 262 HLHESC-----VLSLKFAYCGKWFVSTGK-----------DNLLNAWRTPYGASIFQSK-ESS----------------- 307 (337)
T ss_dssp CCCSSC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTCCEEEEEE-CSS-----------------
T ss_pred cccccc-----cceEEECCCCCEEEEEeC-----------CCeEEEEECCCCCEEEEcc-CCC-----------------
Confidence 778776 999999999999999987 7999999999999999875 442
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++++|+|||+.|||||.||+|+|||+
T Consensus 308 ---------------------~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 308 ---------------------SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp ---------------------CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ---------------------CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence 8999999999999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-44 Score=351.27 Aligned_cols=308 Identities=14% Similarity=0.196 Sum_probs=248.7
Q ss_pred EEEEeCCCeEEeeecccCcEEE----EeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc
Q 011452 108 VFALAQSGVCAAFCRETNQRIC----FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~----tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~ 183 (485)
.+....++.+.+|+....+.+. ...+ |.+.|++|+|||||++||+++ |+ +++||++.+|++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-H~~~V~~l~fs~dg~~lasg~----d~-------~i~iW~~~~~~~~~~ 98 (388)
T d1erja_ 31 ALKKQTNDYYILYNPALPREIDVELHKSLD-HTSVVCCVKFSNDGEYLATGC----NK-------TTQVYRVSDGSLVAR 98 (388)
T ss_dssp TSEEECSSCEEEECTTSCCCEEEEEEEEEE-CSSCCCEEEECTTSSEEEEEC----BS-------CEEEEETTTCCEEEE
T ss_pred ccccCCCCcEEEeCCCCCcceeeeeEeeCC-CCCcEEEEEECCCCCEEEEEe----CC-------eEEEEEecccceEee
Confidence 3456778889999966544322 2223 888999999999999998854 33 899999988886321
Q ss_pred cce--------------eeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceE
Q 011452 184 FAL--------------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIML 247 (485)
Q Consensus 184 ~~l--------------f~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~l 247 (485)
... ....+...+..|+|+ |||++|++|+.|++|++||..+++.+..+. ...|.++++++++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s-~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 177 (388)
T d1erja_ 99 LSDDSAANKDPENLNTSSSPSSDLYIRSVCFS-PDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 177 (388)
T ss_dssp ECC-----------------CCCCBEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred ecccccccccccccccccccCCCCCEEEEEEC-CCCCcceeccccccccccccccccccccccccccccccccccccccc
Confidence 100 000233446689998 799999999999999999999999988886 468999999986655
Q ss_pred EEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-------ccCC
Q 011452 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-------RTEF 320 (485)
Q Consensus 248 l~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-------~gh~ 320 (485)
+..++ .++.|++||++++.++....++ .....+.|.++++..|++++.|++|++||+++++.+..+ .+|.
T Consensus 178 ~~~~~--~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~ 254 (388)
T d1erja_ 178 LVSGS--GDRTVRIWDLRTGQCSLTLSIE-DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHK 254 (388)
T ss_dssp EEEEE--TTSEEEEEETTTTEEEEEEECS-SCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCS
T ss_pred ccccc--cceeeeeeeccccccccccccc-cccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCC
Confidence 55544 3489999999999998888765 445567777777788888999999999999999876654 4688
Q ss_pred CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-Cc------------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecC
Q 011452 321 MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GE------------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKA 386 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s-D~TIklWd~~-G~------------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d 386 (485)
..|.+++|+|++++|++++ |++|++||++ ++ +...+..|... |.+++|+|||++|++|+.
T Consensus 255 ~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~s~~~~~l~sg~~- 328 (388)
T d1erja_ 255 DSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF-----VLSVATTQNDEYILSGSK- 328 (388)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSC-----EEEEEECGGGCEEEEEET-
T ss_pred CCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccce-----EEEEEECCCCCEEEEEeC-
Confidence 9999999999999999999 9999999984 33 45566777766 999999999999999997
Q ss_pred CCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE---
Q 011452 387 DSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF--- 463 (485)
Q Consensus 387 ~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~--- 463 (485)
||+|+|||+.+|+++.+|++|.+ .|++++
T Consensus 329 ----------dg~i~vwd~~~~~~~~~l~~H~~--------------------------------------~V~~~~~~~ 360 (388)
T d1erja_ 329 ----------DRGVLFWDKKSGNPLLMLQGHRN--------------------------------------SVISVAVAN 360 (388)
T ss_dssp ----------TSEEEEEETTTCCEEEEEECCSS--------------------------------------CEEEEEECS
T ss_pred ----------CCEEEEEECCCCcEEEEEeCCCC--------------------------------------CEEEEEEec
Confidence 79999999999999999999983 677776
Q ss_pred ---EcCCCCEEEEecCCCcEEEccC
Q 011452 464 ---YDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 464 ---fspDg~~LaSgs~DgtVklWd~ 485 (485)
|+|||++|||||.||+|+||++
T Consensus 361 ~~~~spd~~~l~s~s~Dg~I~iW~~ 385 (388)
T d1erja_ 361 GSSLGPEYNVFATGSGDCKARIWKY 385 (388)
T ss_dssp SCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred CcccCCCCCEEEEEeCCCEEEEEee
Confidence 5789999999999999999984
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.6e-43 Score=330.85 Aligned_cols=288 Identities=12% Similarity=0.172 Sum_probs=240.2
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
-+..+||.| |.+.|++|+|+|+|++|||+|. | ++++||++.+|+... .+. .+...+..|+|+ |+
T Consensus 45 ~~~~~tL~G-H~~~I~~l~~s~~~~~l~sgs~----D------g~v~iWd~~~~~~~~---~~~-~~~~~v~~v~~~-~~ 108 (340)
T d1tbga_ 45 MRTRRTLRG-HLAKIYAMHWGTDSRLLVSASQ----D------GKLIIWDSYTTNKVH---AIP-LRSSWVMTCAYA-PS 108 (340)
T ss_dssp CCEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------TEEEEEETTTTEEEE---EEE-CSCSCEEEEEEC-TT
T ss_pred eeeeEEECC-CCCCEEEEEECCCCCEEEEEEC----C------CceeeeecccceeEE---EEe-cccccEEeeEee-cc
Confidence 345568888 8899999999999999999874 4 599999998887632 233 244567899998 89
Q ss_pred CeEEEEeeCCCcEEEeecCCCe----EEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYT----MLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~----~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~ 278 (485)
|++|++++.|+++++|+..... ....+.+ ..+......++..++... .|.+.+.|...+.........+..
T Consensus 109 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 185 (340)
T d1tbga_ 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS---GDTTCALWDIETGQQTTTFTGHTG 185 (340)
T ss_dssp SSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE---TTTEEEEEETTTTEEEEEEECCSS
T ss_pred ceeeeeecccceeecccccccccccccceeccccccccccccccccccccccc---ccccccccccccccccccccccce
Confidence 9999999999999999976543 4455543 345555555666666553 347899999988888887777667
Q ss_pred ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEe
Q 011452 279 RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSF 356 (485)
Q Consensus 279 ~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl 356 (485)
.+....+. +.+..+++++.|++|++||+++++++.++.+|...|.+++|+|++++|++++ |++|++||++ .+.+.++
T Consensus 186 ~~~~~~~~-~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~ 264 (340)
T d1tbga_ 186 DVMSLSLA-PDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY 264 (340)
T ss_dssp CEEEEEEC-TTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEeeeccc-cccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccccccccc
Confidence 77777764 6677888889999999999999999999999999999999999999999999 9999999996 7777776
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGS 436 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~ 436 (485)
..+... ..|.+++|+|+|++|++|+. ||+|+|||+.+++++.++.+|.+
T Consensus 265 ~~~~~~---~~i~~~~~s~~~~~l~~g~~-----------dg~i~iwd~~~~~~~~~~~~H~~----------------- 313 (340)
T d1tbga_ 265 SHDNII---CGITSVSFSKSGRLLLAGYD-----------DFNCNVWDALKADRAGVLAGHDN----------------- 313 (340)
T ss_dssp CCTTCC---SCEEEEEECSSSCEEEEEET-----------TSCEEEEETTTCCEEEEECCCSS-----------------
T ss_pred cccccc---CceEEEEECCCCCEEEEEEC-----------CCEEEEEECCCCcEEEEEcCCCC-----------------
Confidence 543321 23899999999999999987 79999999999999999999973
Q ss_pred ccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 437 CNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+|||+.|||||.||+|+|||
T Consensus 314 ---------------------~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 314 ---------------------RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ---------------------CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ---------------------CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 899999999999999999999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.2e-43 Score=327.07 Aligned_cols=277 Identities=9% Similarity=0.136 Sum_probs=237.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|..+|.+|+|+ +++||+++.||+|++||.++|+++.++.+ |...|++++|+|++..+++++. + .++.
T Consensus 16 H~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~~~~~~~----~------~~~~ 84 (317)
T d1vyhc1 16 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCSA----D------MTIK 84 (317)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCCC
T ss_pred CCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCcEEEEeeeccccccccccc----c------cccc
Confidence 66677777776 89999999999999999999999999987 8889999999999999988663 2 3556
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEE
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLI 249 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~ 249 (485)
+|+....+... .+. .+...+..+.|+ |++..|++++.|+++++||+.+++.+.++. ...+..++|+|++.+++
T Consensus 85 ~~~~~~~~~~~---~~~-~~~~~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (317)
T d1vyhc1 85 LWDFQGFECIR---TMH-GHDHNVSSVSIM-PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIA 159 (317)
T ss_dssp EEETTSSCEEE---CCC-CCSSCEEEEEEC-SSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccc---ccc-cccccceeeecc-CCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEE
Confidence 67765554411 111 233445578897 799999999999999999999999988886 45799999999777766
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEec-------------------CCCEEEEEeCCCcEEEEECCCC
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-------------------FNEKLLVKQENENLQILDVRNF 310 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~-------------------~~~~lls~s~D~tIkIWDv~tg 310 (485)
+++ .|++|++|++.+++++..+.+|.+.+..++|.+. .+..+++++.|++|++||++++
T Consensus 160 ~~~--~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~ 237 (317)
T d1vyhc1 160 SCS--NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237 (317)
T ss_dssp EEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT
T ss_pred EEe--CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC
Confidence 654 4589999999999999999999888999988632 1235777899999999999999
Q ss_pred eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC
Q 011452 311 ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS 388 (485)
Q Consensus 311 ~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~ 388 (485)
+++.++.+|...|.+++|+|++++|++++ |++|+|||++ ++++.+|.+|... |++++|+|||++||||+.
T Consensus 238 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-----V~~~~~s~~~~~l~s~s~--- 309 (317)
T d1vyhc1 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHF-----VTSLDFHKTAPYVVTGSV--- 309 (317)
T ss_dssp EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSC-----EEEEEECSSSSCEEEEET---
T ss_pred cEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCC-----EEEEEEcCCCCEEEEEeC---
Confidence 99999999999999999999999999999 9999999996 9999999999977 999999999999999997
Q ss_pred CCCCCcCCCCeEEEEe
Q 011452 389 DDPLAEGNAGSINISN 404 (485)
Q Consensus 389 ~d~~~~~~DgtIklWd 404 (485)
||+|+|||
T Consensus 310 --------Dg~i~iWd 317 (317)
T d1vyhc1 310 --------DQTVKVWE 317 (317)
T ss_dssp --------TSEEEEEC
T ss_pred --------CCeEEEeC
Confidence 79999997
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-44 Score=334.16 Aligned_cols=310 Identities=14% Similarity=0.121 Sum_probs=237.9
Q ss_pred cccce-EEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEE
Q 011452 94 KRSKI-IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (485)
Q Consensus 94 ~~s~V-~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~l 172 (485)
|.++| ..+.|.+++||+++.||+|++||.++|++++++.+ |...|++|+|+|++ .|+++|. | +++++
T Consensus 11 H~~~vitc~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~l~~s~~~-~l~s~s~----D------~~i~i 78 (355)
T d1nexb2 11 HMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSG-HDGGVWALKYAHGG-ILVSGST----D------RTVRV 78 (355)
T ss_dssp CSSSCEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEEC-CSSCEEEEEEETTT-EEEEEET----T------CCEEE
T ss_pred cCCCcEEEEEECCCEEEEEeCCCeEEEEECCCCcEEEEEEC-CCCCEEEEEEcCCC-EEEEEec----c------ccccc
Confidence 44443 33455699999999999999999999999999988 88899999999965 7888773 4 59999
Q ss_pred eEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC------------------
Q 011452 173 EYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------------------ 233 (485)
Q Consensus 173 w~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~------------------ 233 (485)
|++..++... .... ........+.+. ++++.+++++.|++|++||+.++..+.....
T Consensus 79 w~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (355)
T d1nexb2 79 WDIKKGCCTH---VFEGHNSTVRCLDIVEY-KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154 (355)
T ss_dssp EETTTTEEEE---EECCCSSCEEEEEEEEE-TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEE
T ss_pred cccccccccc---ccccccccccccccccc-cccceeeeecCCCcEEEEEccCCceeccccccceeccceecccccccee
Confidence 9987766521 1111 111111235565 7999999999999999999988765433210
Q ss_pred -------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEE
Q 011452 234 -------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (485)
Q Consensus 234 -------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWD 306 (485)
..| ..+.+++.+++.+. .|..|++||+.+++.+.++.++...+..+.|+ +.+..+++++.|++|+|||
T Consensus 155 ~~~~~~~~~v--~~~~~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d 229 (355)
T d1nexb2 155 GVLRGHMASV--RTVSGHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD-HERKRCISASMDTTIRIWD 229 (355)
T ss_dssp EEEECCSSCE--EEEEEETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTTTEEEEEETTSCEEEEE
T ss_pred eeeeeccccc--cccccccceeeeec--ccceeeeeecccccceeeeecccccccccccc-ccceeeecccccceEEeee
Confidence 112 22334333333433 44899999999999999999888888899987 6788999999999999999
Q ss_pred CCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeE-EEECCCCCEEEEE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNN-IYITSDQDLIISY 383 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~s-vafSpDG~~LaS~ 383 (485)
+++++++..+.+|...|.+++|+| ++|++++ |++|++||++ ++.. +..|... +.. .+|+|++++|++|
T Consensus 230 ~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~l~~g 300 (355)
T d1nexb2 230 LENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK--FSYHHTN-----LSAITTFYVSDNILVSG 300 (355)
T ss_dssp TTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE--EEEECTT-----CCCCCEEEECSSEEEEE
T ss_pred cccccccccccccccccccccccc--ceeeeeeccccccccccccccee--cccccCC-----ceEEEEEcCCCCEEEEE
Confidence 999999999999999999998864 6899999 9999999996 6554 4455544 333 4678999999887
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEE-EecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLA-KIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~-tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
+ |++|+|||+++|+++. .+.+|.+ .|++|
T Consensus 301 ~------------d~~i~vwd~~tg~~~~~~~~~~~~--------------------------------------~V~~v 330 (355)
T d1nexb2 301 S------------ENQFNIYNLRSGKLVHANILKDAD--------------------------------------QIWSV 330 (355)
T ss_dssp E------------TTEEEEEETTTCCBCCSCTTTTCS--------------------------------------EEEEE
T ss_pred e------------CCEEEEEECCCCCEEEEEecCCCC--------------------------------------CEEEE
Confidence 6 6999999999999986 4677762 89999
Q ss_pred EEcCCCCEEEEecCCCcEEEcc
Q 011452 463 FYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg~~LaSgs~DgtVklWd 484 (485)
+|+|+ ..|++|+.||+|+||-
T Consensus 331 ~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 331 NFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEETT-EEEEEEESSSCEEEEE
T ss_pred EEcCC-eEEEEEECCCcEEEEE
Confidence 99998 5789999999977763
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.1e-44 Score=350.91 Aligned_cols=281 Identities=13% Similarity=0.103 Sum_probs=237.9
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
+......++++|+|+.||.++ . +.+.+|++..++.. .+|. +|...+.+++|+ |||++||+|+.|
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~----~-------~~v~i~~~~~~~~~---~~~~-~H~~~v~~~~~s-p~g~~latg~~d 79 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN----G-------TSVYTVPVGSLTDT---EIYT-EHSHQTTVAKTS-PSGYYCASGDVH 79 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE----T-------TEEEEEETTCSSCC---EEEC-CCSSCEEEEEEC-TTSSEEEEEETT
T ss_pred CCCCeEEEEEcCCCCEEEEEe----C-------CEEEEEECCCCcee---EEEc-CCCCCEEEEEEe-CCCCeEeccccC
Confidence 334566789999999998854 2 47899999887763 3554 466778899998 799999999999
Q ss_pred CcEEEeecCCCeEE--EEEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCC
Q 011452 215 SIYKVFDLKNYTML--YSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN 290 (485)
Q Consensus 215 ~tiKlWdl~~g~~l--~tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~ 290 (485)
++|+|||+.+++.+ .++. ...|.+|+|+|++.++++++.+.+..++||+++++++++++.+|...+.+|+|+ |++
T Consensus 80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~-~~~ 158 (311)
T d1nr0a1 80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFK-PSR 158 (311)
T ss_dssp SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEEC-SSS
T ss_pred ceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 99999999987643 4453 568999999997776667676777899999999999999999999999999997 566
Q ss_pred CE-EEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEee-------cCC
Q 011452 291 EK-LLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFE-------DHL 360 (485)
Q Consensus 291 ~~-lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~-------gH~ 360 (485)
+. +++++.|++|+|||++++++...+.+|...|.+++|+|++++|++++ |++|++||.. ++.+.+|+ +|.
T Consensus 159 ~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~ 238 (311)
T d1nr0a1 159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 238 (311)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred eeeecccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc
Confidence 65 66678999999999999999999999999999999999999999999 9999999996 88888876 455
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
.+ |.+++|+|||++|++|+. ||+|+|||+.+|+++++|..|...
T Consensus 239 ~~-----V~~~~~s~~~~~l~tgs~-----------Dg~v~iwd~~t~~~~~~l~~~~~~-------------------- 282 (311)
T d1nr0a1 239 GS-----VFGLTWSPDGTKIASASA-----------DKTIKIWNVATLKVEKTIPVGTRI-------------------- 282 (311)
T ss_dssp SC-----EEEEEECTTSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCSSG--------------------
T ss_pred cc-----ccccccCCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEECCCCc--------------------
Confidence 55 999999999999999997 799999999999999999988620
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. ..+.+ +.|+++.|++++.||.|++||.
T Consensus 283 -----~----------~~~~~--~~~~~~~l~s~s~dG~i~~wd~ 310 (311)
T d1nr0a1 283 -----E----------DQQLG--IIWTKQALVSISANGFINFVNP 310 (311)
T ss_dssp -----G----------GCEEE--EEECSSCEEEEETTCCEEEEET
T ss_pred -----c----------ceEEE--EEecCCEEEEEECCCEEEEEeC
Confidence 0 13444 4555668999999999999984
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.2e-43 Score=326.30 Aligned_cols=325 Identities=11% Similarity=0.130 Sum_probs=248.8
Q ss_pred ccccccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCC
Q 011452 70 IRLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNND 149 (485)
Q Consensus 70 ~~l~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~ 149 (485)
+++...++.|..++.+| +.+.|++|||++.||+|++||+++|++++++.+ |...|++++|+|+
T Consensus 6 ~~~~~~l~GH~~~V~s~--------------~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~-h~~~V~~v~~~~~-- 68 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVITC--------------LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDN-- 68 (342)
T ss_dssp CCCCEEEECSTTSCEEE--------------EEEETTEEEEEETTSCEEEEETTTCCEEEECCC-CSSCEEEEEEETT--
T ss_pred CCcCEEECCcCCceEEE--------------EEECCCEEEEEeCCCeEEEEECCCCCEEEEEeC-CCCCEEEEEeCCC--
Confidence 44445566666655443 233499999999999999999999999999987 8889999999984
Q ss_pred EEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEE
Q 011452 150 SLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 228 (485)
Q Consensus 150 ~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l 228 (485)
.|+++|. | +++++|++...+. .... .....+....+ .+..++.+..|+++.+|+..+++..
T Consensus 69 ~l~s~s~----D------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~~~~~~~~~~~ 130 (342)
T d2ovrb2 69 IIISGST----D------RTLKVWNAETGEC-----IHTLYGHTSTVRCMHL---HEKRVVSGSRDATLRVWDIETGQCL 130 (342)
T ss_dssp EEEEEET----T------SCEEEEETTTTEE-----EEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEESSSCCEE
T ss_pred cccccee----c------ccccccccccccc-----eecccccceeEeeeec---ccccccccccceeEEEeecccccce
Confidence 8888774 4 5899999755543 1111 11121222333 3567788899999999999999988
Q ss_pred EEEcCC-cEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEEC
Q 011452 229 YSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDV 307 (485)
Q Consensus 229 ~tl~~~-~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv 307 (485)
..+... ............+++.+ .|++|++||+..++++.++.+|......+. +++..+++++.|++|+|||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~l~s~~~dg~i~~~d~ 204 (342)
T d2ovrb2 131 HVLMGHVAAVRCVQYDGRRVVSGA---YDFMVKVWDPETETCLHTLQGHTNRVYSLQ---FDGIHVVSGSLDTSIRVWDV 204 (342)
T ss_dssp EEEECCSSCEEEEEECSSCEEEEE---TTSCEEEEEGGGTEEEEEECCCSSCEEEEE---ECSSEEEEEETTSCEEEEET
T ss_pred eeeecccccceeeccccceeeeec---CCCeEEEeecccceeeEEEcCccccccccc---CCCCEEEEEeCCCeEEEeec
Confidence 887643 33333333455555543 348999999999999999998766655544 45788999999999999999
Q ss_pred CCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 308 RNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 308 ~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+++++++.+.+|...+.+++++ +++|++++ |++|++||+. ++....+.+|.... ..+..+. +++++|++|+.
T Consensus 205 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~s~s~ 278 (342)
T d2ovrb2 205 ETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--SAVTCLQ--FNKNFVITSSD 278 (342)
T ss_dssp TTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCS--SCEEEEE--ECSSEEEEEET
T ss_pred ccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceee--eceeecc--cCCCeeEEEcC
Confidence 9999999999999999888765 46999999 9999999996 88888888765431 1144454 56679999987
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc
Q 011452 386 ADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD 465 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs 465 (485)
||+|+|||+.+|++++++...... .| ...|++|+|+
T Consensus 279 -----------Dg~i~iwd~~tg~~i~~~~~~~~~--------------------~~-------------~~~v~~v~~s 314 (342)
T d2ovrb2 279 -----------DGTVKLWDLKTGEFIRNLVTLESG--------------------GS-------------GGVVWRIRAS 314 (342)
T ss_dssp -----------TSEEEEEETTTCCEEEEEEECTTG--------------------GG-------------TCEEEEEEEC
T ss_pred -----------CCEEEEEECCCCCEEEEEecccCC--------------------CC-------------CCCEEEEEEC
Confidence 799999999999999998653310 00 0379999999
Q ss_pred CCCCEEEEecCCCc----EEEccC
Q 011452 466 EDRNEIYTGNRHGL----VHVWSN 485 (485)
Q Consensus 466 pDg~~LaSgs~Dgt----VklWd~ 485 (485)
|||..||+|+.||+ |++||.
T Consensus 315 ~~~~~la~g~~dGt~~~~l~~~Df 338 (342)
T d2ovrb2 315 NTKLVCAVGSRNGTEETKLLVLDF 338 (342)
T ss_dssp SSEEEEEEECSSSSSCCEEEEEEC
T ss_pred CCCCEEEEEeCCCCCeeEEEEEeC
Confidence 99999999999997 999984
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-41 Score=328.79 Aligned_cols=277 Identities=15% Similarity=0.139 Sum_probs=228.1
Q ss_pred ccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEE---EEe-ecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccc
Q 011452 93 RKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRI---CFL-NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLR 166 (485)
Q Consensus 93 ~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l---~tl-~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~ 166 (485)
.|.++|.+|+|+ +++||+++ ||+|++||+.+++.. ..+ ...|++.|++|+|+|||+.||+++. |
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~----d----- 118 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----A----- 118 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----S-----
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec----c-----
Confidence 467777777777 99999998 899999998876432 222 2348889999999999999999774 3
Q ss_pred eeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCC
Q 011452 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG 244 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg 244 (485)
++++||++...+... ...+. .+...+..++|+ |++.+|++++.|++|++||+.++++..... ...|.+++|+|+
T Consensus 119 -g~i~iwd~~~~~~~~-~~~~~-~~~~~v~~~~~~-~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~ 194 (337)
T d1gxra_ 119 -STLSIWDLAAPTPRI-KAELT-SSAPACYALAIS-PDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISND 194 (337)
T ss_dssp -SEEEEEECCCC--EE-EEEEE-CSSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred -ccccccccccccccc-ccccc-cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence 599999986544311 01111 233445678997 799999999999999999999999887775 468999999986
Q ss_pred ceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceE
Q 011452 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 245 ~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~ 324 (485)
+..+++++ .|++|++||+++|++++++. |...+.+++|. |++..+++++.|+.|++||++++++... ..|...|.
T Consensus 195 ~~~~~~~~--~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~-~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~i~ 269 (337)
T d1gxra_ 195 GTKLWTGG--LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQL-HLHESCVL 269 (337)
T ss_dssp SSEEEEEE--TTSEEEEEETTTTEEEEEEE-CSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEEE-CCCSSCEE
T ss_pred cccccccc--ccccccccccccceeecccc-cccceEEEEEc-ccccccceeccccccccccccccccccc-cccccccc
Confidence 65555544 34899999999999999886 56789999996 6788899999999999999999988654 57999999
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
+++|+|+|++|+|++ |++|+|||+. |+++.++. |... |.+++|+|||++||+++. ||+|+|
T Consensus 270 ~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~-----v~~~~~s~d~~~l~t~s~-----------D~~I~v 332 (337)
T d1gxra_ 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSS-----VLSCDISVDDKYIVTGSG-----------DKKATV 332 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC-----EEEEEECTTSCEEEEEET-----------TSCEEE
T ss_pred eEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-CCCC-----EEEEEEeCCCCEEEEEeC-----------CCeEEE
Confidence 999999999999999 9999999996 99998876 5555 999999999999999987 799999
Q ss_pred EeC
Q 011452 403 SNI 405 (485)
Q Consensus 403 Wdl 405 (485)
|||
T Consensus 333 Wdl 335 (337)
T d1gxra_ 333 YEV 335 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=4.6e-40 Score=309.53 Aligned_cols=278 Identities=11% Similarity=0.124 Sum_probs=227.5
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
|.++|.+|+|+ +++||+++.||+|++||..+|+.+.++.+ |...|.+|+|+|+|++|++++. | .++.
T Consensus 54 H~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~v~~~~~~~~l~~~~~----d------~~i~ 122 (340)
T d1tbga_ 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGGL----D------NICS 122 (340)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEEC-SCSCEEEEEECTTSSEEEEEET----T------CCEE
T ss_pred CCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEec-ccccEEeeEeeccceeeeeecc----c------ceee
Confidence 44445555554 99999999999999999999999999987 8889999999999999999773 4 5888
Q ss_pred EeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEE
Q 011452 172 IEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll 248 (485)
+|+........ ...... .+... ....+. ..+..++....|.+.+.|+..+........ ...|..+.+.|...++
T Consensus 123 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (340)
T d1tbga_ 123 IYNLKTREGNV-RVSRELAGHTGY-LSCCRF-LDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp EEESSSSCSCC-CEEEEECCCSSC-EEEEEE-EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred ccccccccccc-ccceeccccccc-cccccc-ccccccccccccccccccccccccccccccccceeEeeecccccccee
Confidence 99975554321 111111 12222 223332 345677888899999999998877655543 4679999999866665
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAF 326 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~av 326 (485)
+++. .|++|++||+++++++.+|.+|...+.+|+|+ |++..|++++.|++|++||+++.+.+..+ ..|...|.++
T Consensus 200 ~~~~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~-p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~ 276 (340)
T d1tbga_ 200 VSGA--CDASAKLWDVREGMCRQTFTGHESDINAICFF-PNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EEEE--TTTEEEEEETTTTEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EEee--cCceEEEEECCCCcEEEEEeCCCCCeEEEEEC-CCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEE
Confidence 5544 44899999999999999999999999999996 67889999999999999999999887765 4567789999
Q ss_pred EEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEe
Q 011452 327 IFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISN 404 (485)
Q Consensus 327 aFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWd 404 (485)
+|+|+|++|++++ |++|+|||+. ++++.+|.+|... |++|+|+|||++|||||. ||+|+|||
T Consensus 277 ~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~-----V~~l~~s~d~~~l~s~s~-----------Dg~v~iWd 340 (340)
T d1tbga_ 277 SFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-----VSCLGVTDDGMAVATGSW-----------DSFLKIWN 340 (340)
T ss_dssp EECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC-----EEEEEECTTSSCEEEEET-----------TSCEEEEC
T ss_pred EECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCC-----EEEEEEeCCCCEEEEEcc-----------CCEEEEeC
Confidence 9999999999999 9999999995 9999999999987 999999999999999997 79999997
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.4e-41 Score=316.79 Aligned_cols=283 Identities=11% Similarity=0.086 Sum_probs=224.4
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
|+..++++| |...|.+|+|+|||++|||+|. | ++++||++.+|++.. .+...+...+..++|+ |+
T Consensus 2 g~~~~~~~G-H~~~V~~l~~s~dg~~l~s~s~----D------g~v~vWd~~~~~~~~---~~~~~h~~~v~~v~~~-~~ 66 (299)
T d1nr0a2 2 GSIDQVRYG-HNKAITALSSSADGKTLFSADA----E------GHINSWDISTGISNR---VFPDVHATMITGIKTT-SK 66 (299)
T ss_dssp TEEEEEECC-CSSCEEEEEECTTSSEEEEEET----T------SCEEEEETTTCCEEE---CSSCSCSSCEEEEEEC-TT
T ss_pred CccceEcCC-CCCCcEEEEECCCCCEEEEEcC----C------CeEEEEECCCCcEEE---EEcCCCCCcEEEEEee-cc
Confidence 778888888 8999999999999999999774 4 589999999998732 3333455667789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCe-----EEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~-----~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~ 279 (485)
|++++ ++.|+++++|++.... ....-+...+..++|+|++.+++++.. ..+++|+. ++....... +.
T Consensus 67 g~~~~-~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~---~~i~~~~~--~~~~~~~~~--~~ 138 (299)
T d1nr0a2 67 GDLFT-VSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY---KHIAIYSH--GKLTEVPIS--YN 138 (299)
T ss_dssp SCEEE-EETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES---SEEEEEET--TEEEEEECS--SC
T ss_pred ceeec-ccceeeEEEeccCCcccccccccccccccccccccccccccccccccc---cccccccc--ccccccccc--cc
Confidence 98655 5679999999976432 222334568999999997777776543 58999995 445544443 56
Q ss_pred eeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE---
Q 011452 280 NKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELV--- 353 (485)
Q Consensus 280 ~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll--- 353 (485)
...++|+ |++..+++++.|++|++||++++++.+. ...|...|.+++|+|++++|++++ |++|++||+. ++.+
T Consensus 139 ~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~ 217 (299)
T d1nr0a2 139 SSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT 217 (299)
T ss_dssp EEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7788986 7788888999999999999999887653 457899999999999999999999 9999999995 6654
Q ss_pred EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec--CCCCCCCCcccccCCC
Q 011452 354 TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR--ASNGLPAENECSCSGD 431 (485)
Q Consensus 354 ~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~--gH~~~~~~~~~~~~~~ 431 (485)
..+.+|... |++++|+|+|++||+++. ||+|+|||+.++++...+. +|..
T Consensus 218 ~~~~~h~~~-----v~~l~~s~~~~~l~sgs~-----------dg~i~iwd~~~~~~~~~~~~~~~~~------------ 269 (299)
T d1nr0a2 218 NSWTFHTAK-----VACVSWSPDNVRLATGSL-----------DNSVIVWNMNKPSDHPIIIKGAHAM------------ 269 (299)
T ss_dssp CCCCCCSSC-----EEEEEECTTSSEEEEEET-----------TSCEEEEETTCTTSCCEEETTSSTT------------
T ss_pred ccccccccc-----cccccccccccceEEEcC-----------CCEEEEEECCCCCcceEEEecCCCC------------
Confidence 466778877 999999999999999997 7999999999876543333 3321
Q ss_pred CCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 432 YSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..|.+++| |+++.|+|||.|++|||||+
T Consensus 270 -------------------------~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 270 -------------------------SSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp -------------------------SCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred -------------------------CcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 26776655 66789999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-40 Score=321.31 Aligned_cols=281 Identities=12% Similarity=0.129 Sum_probs=231.3
Q ss_pred ccccccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeec-----------------CCcccEEEEEEeeCCCEE
Q 011452 91 FLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNV-----------------TADEVIRSLFYNKNNDSL 151 (485)
Q Consensus 91 ~~~~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g-----------------~~~~~i~sv~~spdg~~L 151 (485)
.+.|.++|.+|.|+ |++||+|+ |++|++|++.+|+++.++.. .|+..|++|+|+|||++|
T Consensus 58 ~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l 136 (388)
T d1erja_ 58 SLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 136 (388)
T ss_dssp EEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred eCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcc
Confidence 34577888888888 89999987 89999999999999887753 255679999999999999
Q ss_pred EEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE
Q 011452 152 ITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI 231 (485)
Q Consensus 152 as~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl 231 (485)
++++. | +++++|+...++... .+. ++...+..++|+ +++..+++++.|+.+++||+.+..++...
T Consensus 137 ~s~~~----d------g~v~i~~~~~~~~~~---~~~-~h~~~v~~~~~~-~~~~~~~~~~~~~~i~~~d~~~~~~~~~~ 201 (388)
T d1erja_ 137 ATGAE----D------RLIRIWDIENRKIVM---ILQ-GHEQDIYSLDYF-PSGDKLVSGSGDRTVRIWDLRTGQCSLTL 201 (388)
T ss_dssp EEEET----T------SCEEEEETTTTEEEE---EEC-CCSSCEEEEEEC-TTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred eeccc----c------ccccccccccccccc---ccc-cccccccccccc-cccccccccccceeeeeeecccccccccc
Confidence 99774 4 589999988877621 111 344556788997 79999999999999999999999887766
Q ss_pred c-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEEEee-------cCCcceeEEEEEecCCCEEEEEeCCCcE
Q 011452 232 S-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFN-------HLLHRNKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 232 ~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~tl~-------~~~~~~~~V~f~~~~~~~lls~s~D~tI 302 (485)
. ......++++| ++.++++++ .|++|++||+++++.+.++. +|...+.+++|+ |++..|++++.|++|
T Consensus 202 ~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~l~s~~~d~~i 278 (388)
T d1erja_ 202 SIEDGVTTVAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSV 278 (388)
T ss_dssp ECSSCEEEEEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEE
T ss_pred ccccccccccccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC-CCCCEEEEEECCCcE
Confidence 5 35667777774 666666544 34899999999999988764 577789999997 678899999999999
Q ss_pred EEEECCCCe------------eEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCe
Q 011452 303 QILDVRNFE------------LTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNT 368 (485)
Q Consensus 303 kIWDv~tg~------------~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v 368 (485)
++||+++++ +......|...|.+++|+|+|++|++++ |++|++||++ |+++.+|++|... |
T Consensus 279 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~-----V 353 (388)
T d1erja_ 279 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNS-----V 353 (388)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSC-----E
T ss_pred EEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCC-----E
Confidence 999998764 3445567899999999999999999999 9999999996 9999999999977 8
Q ss_pred eEEE------ECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 369 NNIY------ITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 369 ~sva------fSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
.+++ |+|||++||||+. ||+|+|||++
T Consensus 354 ~~~~~~~~~~~spd~~~l~s~s~-----------Dg~I~iW~~~ 386 (388)
T d1erja_ 354 ISVAVANGSSLGPEYNVFATGSG-----------DCKARIWKYK 386 (388)
T ss_dssp EEEEECSSCTTCTTCEEEEEEET-----------TSEEEEEEEE
T ss_pred EEEEEecCcccCCCCCEEEEEeC-----------CCEEEEEeee
Confidence 8887 4789999999997 7999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-39 Score=321.49 Aligned_cols=313 Identities=12% Similarity=0.020 Sum_probs=227.5
Q ss_pred CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC
Q 011452 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
..++|.+++|||||+.||+++ .| ++++||++..+++.. ...|+ +|...+.+|+|+ |+|++|++++.|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~----~~------~~i~iw~~~~~~~~~-~~~l~-gH~~~V~~l~fs-p~~~~l~s~s~D 72 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICP----NN------HEVHIYEKSGNKWVQ-VHELK-EHNGQVTGVDWA-PDSNRIVTCGTD 72 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEEC----SS------SEEEEEEEETTEEEE-EEEEE-CCSSCEEEEEEE-TTTTEEEEEETT
T ss_pred CCCCeEEEEECCCCCEEEEEe----CC------CEEEEEECCCCCEEE-EEEec-CCCCCEEEEEEC-CCCCEEEEEECC
Confidence 456899999999999999866 34 589999987776522 12232 356678899998 799999999999
Q ss_pred CcEEEeecCCCeEEE--EEc--CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEE----EEeecCCcceeEEEEE
Q 011452 215 SIYKVFDLKNYTMLY--SIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL----KSFNHLLHRNKKVDFI 286 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~--tl~--~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L----~tl~~~~~~~~~V~f~ 286 (485)
++|+|||+.+++... .+. ...|.+++|+|++..+++++. |++|++|+++.+... ..+..|...+.+|+|+
T Consensus 73 ~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~--d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 73 RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSG--SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp SCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEET--TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred CeEEEEeecccccccccccccccccccccccccccccceeecc--cCcceeeeeeccccccccccccccccccccccccc
Confidence 999999999877543 343 357999999997666655543 489999998876543 3345677889999996
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCC------------------eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 287 EQFNEKLLVKQENENLQILDVRNF------------------ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg------------------~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
|++..|++++.|++|+|||+... +++....+|...|.+++|+|+|++|++++ |++|++||
T Consensus 151 -p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd 229 (371)
T d1k8kc_ 151 -PNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLAD 229 (371)
T ss_dssp -TTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEE
T ss_pred -ccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEe
Confidence 77889999999999999998653 46667788999999999999999999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCccc
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENEC 426 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~ 426 (485)
++ ++++.++.+|..+ |.+++|+|||++|++|+ |+.+++|+..++....++.++.+.+.....
T Consensus 230 ~~~~~~~~~~~~~~~~-----v~s~~fs~d~~~la~g~------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (371)
T d1k8kc_ 230 ADKKMAVATLASETLP-----LLAVTFITESSLVAAGH------------DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQ 292 (371)
T ss_dssp GGGTTEEEEEECSSCC-----EEEEEEEETTEEEEEET------------TSSCEEEEEETTTTEEEECCCCCCC-----
T ss_pred eecccceeeeeccccc-----ceeeeecCCCCEEEEEc------------CCceEEEEeeCCCceEEEeeeecCcccccc
Confidence 96 9999999999987 99999999999999876 476777665444333344444321110000
Q ss_pred cc--------CCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC----EEEEecCCCcEEEccC
Q 011452 427 SC--------SGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN----EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 427 ~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~----~LaSgs~DgtVklWd~ 485 (485)
.. .-+.........+. .......+-..|+++++.|++. .|+|||.||+|+|||+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~ 358 (371)
T d1k8kc_ 293 RGLTARERFQNLDKKASSEGSAAA-----GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358 (371)
T ss_dssp ---CHHHHHHHCCCCC--------------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEH
T ss_pred ccccceeeEecccceeEEeccccc-----cceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeC
Confidence 00 00000000000000 0000001224799999988763 5999999999999983
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-39 Score=316.45 Aligned_cols=290 Identities=11% Similarity=0.088 Sum_probs=220.2
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeC-CCCeEEEEeeCCCc
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSI 216 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~-pnG~~Las~s~D~t 216 (485)
.+.+|+|+|+|+.||.++ + +. ..++.|+....+... ..-|...+...+..|+|+| .||++||+|+.|++
T Consensus 19 ~~t~l~~~~~~~~la~~~--~-~~------~~i~~~~~~~~~~~~-~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPC--G-KS------AFVRCLDDGDSKVPP-VVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEE--T-TE------EEEEECCSSCCSSCS-EEEECTTTTSCEEEEEECSSTTCCEEEEEETTSE
T ss_pred CeEEEEECCCCCEEEEEe--C-CC------EEEEEEeCCCCCccc-eEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCC
Confidence 356899999999998865 2 22 345566643333321 1122211234577899984 37899999999999
Q ss_pred EEEeecCCCeEE----------EEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEE
Q 011452 217 YKVFDLKNYTML----------YSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (485)
Q Consensus 217 iKlWdl~~g~~l----------~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~ 286 (485)
|||||+..++.. +..+...|.+|+|+|++..+++.+.+.+..+++|+.++|+++.++.+|...+.+++|.
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 168 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLK 168 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEEC
T ss_pred EEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccccccccccc
Confidence 999998754421 1123468999999997776666666778899999999999999999999999999997
Q ss_pred ecCCCEEEEEeCCCcEEEEECCCCeeEEec---ccCCCceEEEEEcCC-CcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 287 EQFNEKLLVKQENENLQILDVRNFELTEVS---RTEFMTPSAFIFLYE-NQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 287 ~~~~~~lls~s~D~tIkIWDv~tg~~~~~l---~gh~~~v~avaFspd-g~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
+..+..+++++.|++|++||+.+++..... .+|...|.+++|+|| +.+|++++ |++|++||++ ++++.+|++|.
T Consensus 169 ~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~ 248 (325)
T d1pgua1 169 QSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQ 248 (325)
T ss_dssp SSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTT
T ss_pred ccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccc
Confidence 433345667889999999999988865554 567888999999997 68999999 9999999996 99999999998
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCcccc
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVK 440 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~ 440 (485)
..+... +.++++ |||++|++++. |++|+|||+.+|++++++..|.+.
T Consensus 249 ~~v~~~-~~s~~~-~dg~~l~s~s~-----------D~~i~iwd~~~~~~~~~~~~~~~~-------------------- 295 (325)
T d1pgua1 249 EPVQGG-IFALSW-LDSQKFATVGA-----------DATIRVWDVTTSKCVQKWTLDKQQ-------------------- 295 (325)
T ss_dssp BCCCSC-EEEEEE-SSSSEEEEEET-----------TSEEEEEETTTTEEEEEEECCTTC--------------------
T ss_pred cccccc-eeeeec-cCCCEEEEEeC-----------CCeEEEEECCCCCEEEEEEecCCc--------------------
Confidence 873221 333333 79999999997 799999999999999999988630
Q ss_pred ccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 441 KHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 441 ~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
. .....++.+++++ .|+|||.||+|++||+
T Consensus 296 -----~---------~~~~~~~~~~~~~-~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 296 -----L---------GNQQVGVVATGNG-RIISLSLDGTLNFYEL 325 (325)
T ss_dssp -----G---------GGCEEEEEEEETT-EEEEEETTSCEEEEET
T ss_pred -----c---------cCeEEEEEECCCC-EEEEEECCCEEEEEEC
Confidence 0 0023344444443 7899999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=5.7e-39 Score=313.42 Aligned_cols=280 Identities=9% Similarity=0.008 Sum_probs=228.8
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~ 171 (485)
.|..+..++++ |+.||.++ ++.+.+|++++++....+.+ |.+.|.+++|+|||++||+++. | ++++
T Consensus 16 ~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~-H~~~v~~~~~sp~g~~latg~~----d------g~i~ 83 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTE-HSHQTTVAKTSPSGYYCASGDV----H------GNVR 83 (311)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECC-CSSCEEEEEECTTSSEEEEEET----T------SEEE
T ss_pred CCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcC-CCCCEEEEEEeCCCCeEecccc----C------ceEe
Confidence 34444444554 89998875 66789999999999988876 8889999999999999999774 3 5999
Q ss_pred EeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC--CCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCce-
Q 011452 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIM- 246 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~--D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~- 246 (485)
||++..++.... ..+. .+...+..|+|+ |+|++|++++. |++++||++++++++.++.+ +.|.+|+|+|++.
T Consensus 84 iwd~~~~~~~~~-~~~~-~~~~~v~~v~~s-~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~ 160 (311)
T d1nr0a1 84 IWDTTQTTHILK-TTIP-VFSGPVKDISWD-SESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPF 160 (311)
T ss_dssp EEESSSTTCCEE-EEEE-CSSSCEEEEEEC-TTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSC
T ss_pred eeeeeccccccc-cccc-cccCcccccccc-cccccccccccccccccccccccccccccccccccccccccccccccee
Confidence 999987765211 1122 244567789998 79999999875 56799999999998887754 5799999998554
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec-------ccC
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS-------RTE 319 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l-------~gh 319 (485)
++++++ .|++|++||+++++++..+.+|...+..|.|+ |++..+++++.|++|+|||+.+++.+..+ .+|
T Consensus 161 ~l~sgs--~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~-p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h 237 (311)
T d1nr0a1 161 RIISGS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYN-PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH 237 (311)
T ss_dssp EEEEEE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred eecccc--cccccccccccccccccccccccccccccccC-ccccccccccccccccccccccccccccccccccccccc
Confidence 455544 45899999999999999999999999999997 67888999999999999999999887765 368
Q ss_pred CCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 320 FMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 320 ~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
...|++++|+|+|++|+|++ |++|+|||++ |+++++|..|.... ...+.+.+++++|++++. |
T Consensus 238 ~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~----~~~~~~~~~~~~l~s~s~-----------d 302 (311)
T d1nr0a1 238 SGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIE----DQQLGIIWTKQALVSISA-----------N 302 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGG----GCEEEEEECSSCEEEEET-----------T
T ss_pred cccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCcc----ceEEEEEecCCEEEEEEC-----------C
Confidence 89999999999999999999 9999999996 99999999886431 233455566778999987 7
Q ss_pred CeEEEEeCC
Q 011452 398 GSINISNIL 406 (485)
Q Consensus 398 gtIklWdl~ 406 (485)
|.|++||.+
T Consensus 303 G~i~~wd~d 311 (311)
T d1nr0a1 303 GFINFVNPE 311 (311)
T ss_dssp CCEEEEETT
T ss_pred CEEEEEeCC
Confidence 999999963
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-38 Score=300.96 Aligned_cols=285 Identities=11% Similarity=0.055 Sum_probs=219.5
Q ss_pred cccccccCCCCcccccccccccccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
+..+..|..++.+..|+|+ +++||+++.||+|++||+++|+++.++...|...|.+++|+|+|+.++
T Consensus 5 ~~~~~GH~~~V~~l~~s~d-------------g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~ 71 (299)
T d1nr0a2 5 DQVRYGHNKAITALSSSAD-------------GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFT 71 (299)
T ss_dssp EEEECCCSSCEEEEEECTT-------------SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEE
T ss_pred ceEcCCCCCCcEEEEECCC-------------CCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeec
Confidence 3445555555555555555 899999999999999999999999999877999999999999998654
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
+ + .++ ++++|++....... .......+...+..++|+ ++|++++.++ ++.+++|+. .+......
T Consensus 72 ~-~---~d~-------~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s-~~g~~~~~~~-~~~i~~~~~--~~~~~~~~ 135 (299)
T d1nr0a2 72 V-S---WDD-------HLKVVPAGGSGVDS-SKAVANKLSSQPLGLAVS-ADGDIAVAAC-YKHIAIYSH--GKLTEVPI 135 (299)
T ss_dssp E-E---TTT-------EEEEECSSSSSSCT-TSCCEEECSSCEEEEEEC-TTSSCEEEEE-SSEEEEEET--TEEEEEEC
T ss_pred c-c---cee-------eEEEeccCCccccc-cccccccccccccccccc-cccccccccc-ccccccccc--cccccccc
Confidence 3 3 244 89999975444322 222222334556789998 7999887765 679999994 45555556
Q ss_pred CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCe
Q 011452 233 DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFE 311 (485)
Q Consensus 233 ~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~ 311 (485)
...+..++|+|++.++++++ .|+.|++||++++++.. ....|...+..++|+ |++..|++++.|++|++||+.++.
T Consensus 136 ~~~~~~~~~s~~~~~l~~g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~ 212 (299)
T d1nr0a2 136 SYNSSCVALSNDKQFVAVGG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS-NNGAFLVATDQSRKVIPYSVANNF 212 (299)
T ss_dssp SSCEEEEEECTTSCEEEEEE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEEC-TTSSEEEEEETTSCEEEEEGGGTT
T ss_pred cccccccccccccccccccc--ccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 77899999999777666654 34899999999988764 334677889999997 678889999999999999999876
Q ss_pred eE---EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 312 LT---EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 312 ~~---~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
.+ ..+.+|...|.+++|+|+|++|++++ |++|+|||++ ++. +.....|... .|+.+ ++|++++|+|++
T Consensus 213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~----~v~~~-~~~~~~~l~s~s 287 (299)
T d1nr0a2 213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMS----SVNSV-IWLNETTIVSAG 287 (299)
T ss_dssp EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTS----CEEEE-EEEETTEEEEEE
T ss_pred cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCC----cEEEE-EECCCCEEEEEe
Confidence 54 34677999999999999999999999 9999999995 543 3344444332 25555 557788999998
Q ss_pred cCCCCCCCCcCCCCeEEEEeC
Q 011452 385 KADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl 405 (485)
. |++||||||
T Consensus 288 ~-----------D~~i~iWdl 297 (299)
T d1nr0a2 288 Q-----------DSNIKFWNV 297 (299)
T ss_dssp T-----------TSCEEEEEC
T ss_pred C-----------CCEEEEEec
Confidence 6 799999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-38 Score=314.95 Aligned_cols=280 Identities=11% Similarity=0.084 Sum_probs=223.9
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCc--EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~--~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
...||..++|+ +++||+++.||+|++|+..+++ ++.+|.+ |...|++|+|+|+|++||++|. | ++
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~g-H~~~V~~l~fsp~~~~l~s~s~----D------~~ 74 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE-HNGQVTGVDWAPDSNRIVTCGT----D------RN 74 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEEC-CSSCEEEEEEETTTTEEEEEET----T------SC
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecC-CCCCEEEEEECCCCCEEEEEEC----C------Ce
Confidence 34667777777 8999999999999999998776 5667776 8889999999999999999874 4 59
Q ss_pred EEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEE----EEc--CCcEEEEEEc
Q 011452 170 TRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY----SIS--DKNVQEIKIS 242 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~----tl~--~~~V~~VafS 242 (485)
++||++..++... .+.. .+...+..++|+ |+|+.|++++.|++|++|++....... ... ...|.+++|+
T Consensus 75 i~vWd~~~~~~~~---~~~~~~~~~~v~~i~~~-p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~ 150 (371)
T d1k8kc_ 75 AYVWTLKGRTWKP---TLVILRINRAARCVRWA-PNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH 150 (371)
T ss_dssp EEEEEEETTEEEE---EEECCCCSSCEEEEEEC-TTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC
T ss_pred EEEEeeccccccc---ccccccccccccccccc-cccccceeecccCcceeeeeeccccccccccccccccccccccccc
Confidence 9999997776422 2221 233456789998 799999999999999999987655322 222 3579999999
Q ss_pred CCceEEEEEcCCCCeeEEEEecCC------------------CeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEE
Q 011452 243 PGIMLLIFTKASGHVPLKILSIED------------------GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQI 304 (485)
Q Consensus 243 pg~~ll~sss~~~D~tIklWdi~t------------------G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkI 304 (485)
|++.++++++ .|++|++||+.. ++++.++.+|...+.+|+|+ |++.+|++++.|++|++
T Consensus 151 p~~~~l~s~s--~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~s~~~d~~i~i 227 (371)
T d1k8kc_ 151 PNSVLLAAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS-ANGSRVAWVSHDSTVCL 227 (371)
T ss_dssp TTSSEEEEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC-SSSSEEEEEETTTEEEE
T ss_pred ccccceeccc--cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee-cccccccccccCCcceE
Confidence 9777666654 458999999764 56788888999999999997 68889999999999999
Q ss_pred EECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEee--------------------------
Q 011452 305 LDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFE-------------------------- 357 (485)
Q Consensus 305 WDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~-------------------------- 357 (485)
||+++++++..+.+|...|.+++|+|||++|++++|+.+++|+.+ ......+.
T Consensus 228 wd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (371)
T d1k8kc_ 228 ADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307 (371)
T ss_dssp EEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred EeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccce
Confidence 999999999999999999999999999999998888888887652 21111111
Q ss_pred ---------------cCCCCCCCCCeeEEEECCCC----CEEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 358 ---------------DHLLWHPDCNTNNIYITSDQ----DLIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 358 ---------------gH~~~~~~~~v~svafSpDG----~~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
.|... |++|++.|++ ..|+|++. ||+|+|||+.+
T Consensus 308 ~~~~~~~~~~~~~~~~H~~~-----I~~i~~~~~~~~~~~~~~T~g~-----------Dg~v~iW~~~~ 360 (371)
T d1k8kc_ 308 ASSEGSAAAGAGLDSLHKNS-----VSQISVLSGGKAKCSQFCTTGM-----------DGGMSIWDVRS 360 (371)
T ss_dssp C---------CCCSSSSSSC-----EEEEEEEESTTTSCSEEEEEET-----------TSEEEEEEHHH
T ss_pred eEEeccccccceecccccCC-----EEEEEEeCCCCcceEEEEEEcC-----------CCeEEEEeCCc
Confidence 14433 8999998865 36889987 79999999864
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-37 Score=292.83 Aligned_cols=269 Identities=13% Similarity=0.093 Sum_probs=217.4
Q ss_pred cCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCC
Q 011452 124 TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV 203 (485)
Q Consensus 124 tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~p 203 (485)
+++++++|.| |...|.+|+|+| |+|+|. | +++++|++.+++. .|...+..++|+ +
T Consensus 2 ~~~~i~~l~g-H~~~I~~l~~s~----l~sgs~----D------g~v~~Wd~~~~~~---------~h~~~V~~~~~~-~ 56 (287)
T d1pgua2 2 HDEVLKTISG-HNKGITALTVNP----LISGSY----D------GRIMEWSSSSMHQ---------DHSNLIVSLDNS-K 56 (287)
T ss_dssp EEEEEEEECC-CSSCEEEEETTT----TEEEET----T------SCEEETTTTEEEC---------CCCSCEEEEECC-S
T ss_pred CcceeEEECC-CCCceEEEEECc----EEEEeC----C------CeEEEEECCCCCC---------CCCCCEEEEEec-C
Confidence 3688999988 899999999998 888774 4 5999999765432 344566788886 4
Q ss_pred CCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEE
Q 011452 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V 283 (485)
+ ..+++++.|+++|+|++.+.+ ....+..+++++++.+++.... ..+.+|+..+++.++++..+. ...
T Consensus 57 ~-~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~ 124 (287)
T d1pgua2 57 A-QEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAVLTND---DDLLILQSFTGDIIKSVRLNS---PGS 124 (287)
T ss_dssp T-TCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEEEETT---SEEEEEETTTCCEEEEEECSS---CEE
T ss_pred C-CeEEEEeeccccccccccccc-----cccceeeeeeccCCceEEEeec---ccceeeeccceeeeeeccccc---eee
Confidence 4 567899999999999975422 2456788999988888777543 579999999999999998532 234
Q ss_pred EEEecCCCEEEEEeC-CCcEEEEECCCCeeEEec-ccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEE-Eeec
Q 011452 284 DFIEQFNEKLLVKQE-NENLQILDVRNFELTEVS-RTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVT-SFED 358 (485)
Q Consensus 284 ~f~~~~~~~lls~s~-D~tIkIWDv~tg~~~~~l-~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~-tl~g 358 (485)
++. ++++.+++++. +++|++|++.+.+....+ ..|...+.+++|+|+|++|++++ |++|++||+. ++.+. .+.+
T Consensus 125 ~~~-~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~ 203 (287)
T d1pgua2 125 AVS-LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAF 203 (287)
T ss_dssp EEE-ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCC
T ss_pred eee-ccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccc
Confidence 444 56788888875 468999999877765554 45778999999999999999999 9999999996 77655 4788
Q ss_pred CCCCCCCCCeeEEEECCC----------CCEEEEEecCCCCCCCCcCCCCeEEEEeCCC-CeEEEEecCCCCCCCCcccc
Q 011452 359 HLLWHPDCNTNNIYITSD----------QDLIISYCKADSDDPLAEGNAGSINISNILT-GKCLAKIRASNGLPAENECS 427 (485)
Q Consensus 359 H~~~~~~~~v~svafSpD----------G~~LaS~s~d~~~d~~~~~~DgtIklWdl~T-Gk~l~tl~gH~~~~~~~~~~ 427 (485)
|... |.+++|+|+ +++|||||. |++|+|||+.+ ++++..+.+|..
T Consensus 204 h~~~-----v~~~~~~p~~~~~~~~~~~~~~l~sgs~-----------D~~i~iw~~~~~~~~~~~~~~h~~-------- 259 (287)
T d1pgua2 204 RTSK-----INAISWKPAEKGANEEEIEEDLVATGSL-----------DTNIFIYSVKRPMKIIKALNAHKD-------- 259 (287)
T ss_dssp CSSC-----EEEEEECCCC------CCSCCEEEEEET-----------TSCEEEEESSCTTCCEEETTSSTT--------
T ss_pred cccc-----cceeeecccccccccccCCCCeeEeecC-----------CCeEEEEECCCCCeEEEEeCCCCC--------
Confidence 9877 999999875 568999987 79999999977 678888999973
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.|++|+|+||+ .|+|++.|++||||++
T Consensus 260 ------------------------------~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 260 ------------------------------GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp ------------------------------CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred ------------------------------CeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 89999999987 5899999999999984
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.4e-36 Score=302.41 Aligned_cols=300 Identities=9% Similarity=0.015 Sum_probs=212.9
Q ss_pred cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc-eeee-ccc---cCce---EEEEeCCC
Q 011452 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA-LFES-ESL---KWPG---FVEFDDVN 204 (485)
Q Consensus 133 g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~-lf~~-~~~---~~~~---~V~Fs~pn 204 (485)
.+|...|++|++++ +.|+|+|. | ++++||+..+++...... .... .+. .++. .+.++..+
T Consensus 11 ~~H~~~I~~v~~~~--~~l~S~S~----D------~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (393)
T d1sq9a_ 11 KAHDADIFSVSACN--SFTVSCSG----D------GYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFE 78 (393)
T ss_dssp SCSSSCEEEEEECS--SEEEEEET----T------SEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEE
T ss_pred CcccCccEEEEEeC--CEEEEEEC----C------CeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCC
Confidence 45999999999875 68999884 4 599999987665422111 1111 000 0111 23333345
Q ss_pred CeEEEEeeCCCcEEEeecCCCeE---E--EEE-------cCCcEEEEEEcCC-----ceEEEEEcCCCCeeEEEEecCCC
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTM---L--YSI-------SDKNVQEIKISPG-----IMLLIFTKASGHVPLKILSIEDG 267 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~---l--~tl-------~~~~V~~VafSpg-----~~ll~sss~~~D~tIklWdi~tG 267 (485)
+.++++++.|++|++|++..... + ..+ +...++.++++++ +.++++++ .|++|++|++...
T Consensus 79 ~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 79 LCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEESS
T ss_pred CcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc--CCCcEEEEEeecC
Confidence 67899999999999999764321 1 111 1246888888853 23333433 4589999997421
Q ss_pred e---------------EEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe------cccCCCce
Q 011452 268 T---------------VLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV------SRTEFMTP 323 (485)
Q Consensus 268 ~---------------~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~------l~gh~~~v 323 (485)
. ..... ..+...+.+|+|+ |+ +.|++++.|++|+|||+++++++.. +.+|...|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d-g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V 234 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-ER-GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSI 234 (393)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-TT-SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCE
T ss_pred CcccceeeeeeccceecccceecccCCCCcEEEEEEC-CC-CEEEEEeCCCcEEEEeecccccccccccccccccccceE
Confidence 1 11111 2333446789997 44 5888899999999999999987654 46799999
Q ss_pred EEEEEcCCCcEEEEEe-CCc---EEEEeCC-CcEEEEee-------------cCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 324 SAFIFLYENQLFLTFR-NRT---VAVWNFR-GELVTSFE-------------DHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 324 ~avaFspdg~llaS~s-D~T---IklWd~~-G~ll~tl~-------------gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
++++|+|||++|++++ |++ |+|||++ |+++.+|. ||..+ |++|+|+|||++|||+|.
T Consensus 235 ~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~-----V~~l~fspd~~~l~S~s~ 309 (393)
T d1sq9a_ 235 RSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW-----VMSLSFNDSGETLCSAGW 309 (393)
T ss_dssp EEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC-----EEEEEECSSSSEEEEEET
T ss_pred EEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCc-----eeeeccCCCCCeeEEECC
Confidence 9999999999999999 875 9999996 99999885 79888 999999999999999997
Q ss_pred CCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCC---cccccCCCCCCCCccccccccccccccchhcccCCeEEE
Q 011452 386 ADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAE---NECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITAL 462 (485)
Q Consensus 386 d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl 462 (485)
|++|||||+.+|+|+++|+||.+.-.. ..+..+++..+ +...++.+
T Consensus 310 -----------D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 358 (393)
T d1sq9a_ 310 -----------DGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSL--------------------AEPGVFDV 358 (393)
T ss_dssp -----------TSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBC--------------------SSCCEEEE
T ss_pred -----------CCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEE--------------------EEcccceE
Confidence 799999999999999999999841000 11222222111 11368888
Q ss_pred EEcCCC----------CEEEEecCCCcEEEcc
Q 011452 463 FYDEDR----------NEIYTGNRHGLVHVWS 484 (485)
Q Consensus 463 ~fspDg----------~~LaSgs~DgtVklWd 484 (485)
.|.|++ +.|++++.|+.||+|+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 359 KFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp EEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 888765 4599999999999996
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-36 Score=274.81 Aligned_cols=271 Identities=13% Similarity=0.230 Sum_probs=212.4
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
+..... |...|+++. +||+.|||+|. | ++|+||++.+|++.. .|. +|...+.+|+| |+++
T Consensus 8 i~~~~~-~~~~V~c~~--~d~~~l~sgs~----D------g~i~vWd~~~~~~~~---~l~-~H~~~V~~v~~---~~~~ 67 (293)
T d1p22a2 8 IHCRSE-TSKGVYCLQ--YDDQKIVSGLR----D------NTIKIWDKNTLECKR---ILT-GHTGSVLCLQY---DERV 67 (293)
T ss_dssp EECCCS-SCCCEEEEE--CCSSEEEEEES----S------SCEEEEESSSCCEEE---EEC-CCSSCEEEEEC---CSSE
T ss_pred EeccCC-CCCCEEEEE--EcCCEEEEEeC----C------CeEEEEECCCCcEEE---EEe-cCCCCEeeeec---ccce
Confidence 333444 666788864 58999999874 4 599999999998732 333 24555666766 5789
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeE---EEEeecCCcceeEE
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV---LKSFNHLLHRNKKV 283 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~---L~tl~~~~~~~~~V 283 (485)
|++|+.|++|++|++.++...............+. +...+++.. .++++++|++.+... ...+..|...+..+
T Consensus 68 l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 144 (293)
T d1p22a2 68 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCS---KDRSIAVWDMASPTDITLRRVLVGHRAAVNVV 144 (293)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEE---TTSCEEEEECSSSSCCEEEEEECCCSSCEEEE
T ss_pred eecccccccccccccccccccccccccccccccccccccceeecc---cccceeEeeccccccccccccccccccccccc
Confidence 99999999999999999998877764433333334 455555553 347999999987664 34555555555555
Q ss_pred EEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCC
Q 011452 284 DFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLL 361 (485)
Q Consensus 284 ~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~ 361 (485)
.+. +..+++++.|++|++||+++++++..+.+|...+..+.++ +..|++++ |++|+|||++ ++++..+.+|..
T Consensus 145 ~~~---~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 219 (293)
T d1p22a2 145 DFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE 219 (293)
T ss_dssp EEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS
T ss_pred eec---ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce
Confidence 553 5678888999999999999999999999999888887665 56789998 9999999996 999999999886
Q ss_pred CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC---------CeEEEEecCCCCCCCCcccccCCCC
Q 011452 362 WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT---------GKCLAKIRASNGLPAENECSCSGDY 432 (485)
Q Consensus 362 ~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T---------Gk~l~tl~gH~~~~~~~~~~~~~~~ 432 (485)
. +. .+++++++|++++. ||+|+|||+.+ .++++++.+|.+
T Consensus 220 ~-----v~--~~~~~~~~l~sg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~------------- 268 (293)
T d1p22a2 220 L-----VR--CIRFDNKRIVSGAY-----------DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG------------- 268 (293)
T ss_dssp C-----EE--EEECCSSEEEEEET-----------TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS-------------
T ss_pred e-----ee--eccccceEEEEEcC-----------CCEEEEEECCCCccccccCCceeeEEecCCCC-------------
Confidence 5 54 56789999999997 79999999754 468899999973
Q ss_pred CCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 433 SSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|++|+|+ ++.|||||.||+|+|||
T Consensus 269 -------------------------~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 269 -------------------------RVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -------------------------CCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred -------------------------CEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 88999985 57899999999999998
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.8e-35 Score=277.31 Aligned_cols=280 Identities=12% Similarity=0.115 Sum_probs=211.9
Q ss_pred EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeE
Q 011452 128 ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKV 207 (485)
Q Consensus 128 l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~ 207 (485)
..||.|+.+.+|.++ +++|++|||+|. | ++++|||+.+|++.. .|. +|...+..|+|+ |+ .+
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----D------g~i~vWd~~~~~~~~---~l~-~H~~~V~~l~~s-~~-~~ 66 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----D------KMIRVYDSINKKFLL---QLS-GHDGGVWALKYA-HG-GI 66 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----T------TEEEEEETTTTEEEE---EEE-CCSSCEEEEEEE-TT-TE
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----C------CeEEEEECCCCcEEE---EEE-CCCCCEEEEEEc-CC-CE
Confidence 347888334455555 456889999773 4 599999999888732 233 356678899998 55 47
Q ss_pred EEEeeCCCcEEEeecCCCeEEEEEcC----CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC------
Q 011452 208 LTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL------ 277 (485)
Q Consensus 208 Las~s~D~tiKlWdl~~g~~l~tl~~----~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~------ 277 (485)
|++++.|++|++|++.+.++...... ..+..+.++|++..+++++ .|++|++||+.+++.+.......
T Consensus 67 l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~iw~~~~~~~~~~~~~~~~~~~~~ 144 (355)
T d1nexb2 67 LVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS--RDNTLHVWKLPKESSVPDHGEEHDYPLVF 144 (355)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE--TTSEEEEEECCC-----------CCCEEE
T ss_pred EEEEecccccccccccccccccccccccccccccccccccccceeeeec--CCCcEEEEEccCCceeccccccceeccce
Confidence 89999999999999999998777642 2355677778777666654 34899999999887665432110
Q ss_pred --------------cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 278 --------------HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 278 --------------~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~T 342 (485)
.+...+....+++..++.+..|+.|++||+++++.+....++...+.++.|+|+++++++++ |++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 224 (355)
T d1nexb2 145 HTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224 (355)
T ss_dssp SCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred eccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccce
Confidence 01112333345677888899999999999999999999999999999999999999999999 999
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLP 421 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~ 421 (485)
|++||++ ++++..+++|... |.+++|+| ++|++++. ||+|++||+.++++. +..|..
T Consensus 225 i~i~d~~~~~~~~~~~~h~~~-----v~~~~~~~--~~l~~~~~-----------dg~i~iwd~~~~~~~--~~~~~~-- 282 (355)
T d1nexb2 225 IRIWDLENGELMYTLQGHTAL-----VGLLRLSD--KFLVSAAA-----------DGSIRGWDANDYSRK--FSYHHT-- 282 (355)
T ss_dssp EEEEETTTCCEEEEECCCSSC-----CCEEEECS--SEEEEECT-----------TSEEEEEETTTCCEE--EEEECT--
T ss_pred EEeeecccccccccccccccc-----cccccccc--ceeeeeec-----------cccccccccccccee--cccccC--
Confidence 9999996 9999999999977 89998864 69999987 799999999988764 445552
Q ss_pred CCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 422 AENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
..+...+|+|+++.|++|+ |++|+|||.
T Consensus 283 -----------------------------------~~~~~~~~~~~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 283 -----------------------------------NLSAITTFYVSDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp -----------------------------------TCCCCCEEEECSSEEEEEE-TTEEEEEET
T ss_pred -----------------------------------CceEEEEEcCCCCEEEEEe-CCEEEEEEC
Confidence 0222346789999888876 899999984
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-35 Score=270.86 Aligned_cols=264 Identities=11% Similarity=0.130 Sum_probs=213.6
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
+...|.++.+.+++|||++.||+|++||+++++++++|.+ |...|.+|.| ++++|+++|. | +++++|
T Consensus 14 ~~~~V~c~~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~-H~~~V~~v~~--~~~~l~s~s~----D------~~i~~~ 80 (293)
T d1p22a2 14 TSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTG-HTGSVLCLQY--DERVIITGSS----D------STVRVW 80 (293)
T ss_dssp SCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECC-CSSCEEEEEC--CSSEEEEEET----T------SCEEEE
T ss_pred CCCCEEEEEEcCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEeeeec--ccceeecccc----c------cccccc
Confidence 4566888888899999999999999999999999999987 8889999876 6789999774 4 589999
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE---EEEEc--CCcEEEEEEcCCceEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSIS--DKNVQEIKISPGIMLL 248 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~---l~tl~--~~~V~~VafSpg~~ll 248 (485)
++..+... ... .........+. +....++++..++++++||..+... ...+. ...|..+.+.+.....
T Consensus 81 ~~~~~~~~-----~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (293)
T d1p22a2 81 DVNTGEML-----NTL-IHHCEAVLHLR-FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVS 153 (293)
T ss_dssp ESSSCCEE-----EEE-CCCCSCEEEEE-CCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEE
T ss_pred cccccccc-----ccc-ccccccccccc-ccccceeecccccceeEeeccccccccccccccccccccccceeccccccc
Confidence 99888752 221 11222234454 4566788899999999999987653 33333 3578888888765543
Q ss_pred EEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEE
Q 011452 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIF 328 (485)
Q Consensus 249 ~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaF 328 (485)
. + .|++|++||+.+++++.++.++...+..+.+. +..+++++.|++|+|||+++++++....+|...+.. +
T Consensus 154 -~-s--~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~ 224 (293)
T d1p22a2 154 -A-S--GDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--I 224 (293)
T ss_dssp -E-E--TTSEEEEEETTTCCEEEEEECCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--E
T ss_pred -c-c--CCCceeeecCCCCcEEEEEcccccccccccCC---CCeEEEecCCCEEEEEecccceeeeeecccceeeee--c
Confidence 2 2 45899999999999999999887777777764 578999999999999999999999999999888765 5
Q ss_pred cCCCcEEEEEe-CCcEEEEeCC----------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCC
Q 011452 329 LYENQLFLTFR-NRTVAVWNFR----------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNA 397 (485)
Q Consensus 329 spdg~llaS~s-D~TIklWd~~----------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~D 397 (485)
++++++|++++ |++|+|||+. ..++++|.+|... |++|+| |+++|||+|. |
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~-----V~~v~~--d~~~l~s~s~-----------D 286 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR-----VFRLQF--DEFQIVSSSH-----------D 286 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSC-----CCCEEE--CSSCEEECCS-----------S
T ss_pred cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCC-----EEEEEE--cCCEEEEEec-----------C
Confidence 78899999999 9999999952 3578999999987 899988 5678999986 7
Q ss_pred CeEEEEe
Q 011452 398 GSINISN 404 (485)
Q Consensus 398 gtIklWd 404 (485)
|+|+|||
T Consensus 287 g~i~iWD 293 (293)
T d1p22a2 287 DTILIWD 293 (293)
T ss_dssp SEEEEEC
T ss_pred CEEEEeC
Confidence 9999998
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.2e-35 Score=271.36 Aligned_cols=283 Identities=14% Similarity=0.214 Sum_probs=224.1
Q ss_pred eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEE
Q 011452 120 FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE 199 (485)
Q Consensus 120 W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~ 199 (485)
|+..+-++.++|.| |.+.|.+ +++++|++|||+|. | ++++||++.+|++.. .+. +|...+.+|+
T Consensus 1 W~~~~~~~~~~l~G-H~~~V~s-~~~~~g~~l~sgs~----D------g~i~vWd~~~~~~~~---~~~-~h~~~V~~v~ 64 (342)
T d2ovrb2 1 WRRGELKSPKVLKG-HDDHVIT-CLQFCGNRIVSGSD----D------NTLKVWSAVTGKCLR---TLV-GHTGGVWSSQ 64 (342)
T ss_dssp HHHSCCCCCEEEEC-STTSCEE-EEEEETTEEEEEET----T------SCEEEEETTTCCEEE---ECC-CCSSCEEEEE
T ss_pred CCCCCCCcCEEECC-cCCceEE-EEEECCCEEEEEeC----C------CeEEEEECCCCCEEE---EEe-CCCCCEEEEE
Confidence 66677788889987 7777766 47888999999874 4 599999999998732 232 3556677899
Q ss_pred EeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 200 Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
|+ |+ +|++++.|+++++|+............ ..+....+.+..... + ..|.++.+|+..+++....+..+.
T Consensus 65 ~~-~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~d~~i~~~~~~~~~~~~~~~~~~ 137 (342)
T d2ovrb2 65 MR-DN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS-G---SRDATLRVWDIETGQCLHVLMGHV 137 (342)
T ss_dssp EE-TT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEE-E---ETTSEEEEEESSSCCEEEEEECCS
T ss_pred eC-CC--ccccceecccccccccccccceecccccceeEeeeecccccccc-c---ccceeEEEeecccccceeeeeccc
Confidence 97 44 899999999999999998887666653 456666655554433 3 245899999999999999887543
Q ss_pred cceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEE
Q 011452 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTS 355 (485)
Q Consensus 278 ~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~t 355 (485)
.... .+ .+....+++++.|++|++||+...+++..+.+|...+.. ++++++.|++++ |++|++||++ ++++.+
T Consensus 138 ~~~~--~~-~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~ 212 (342)
T d2ovrb2 138 AAVR--CV-QYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHT 212 (342)
T ss_dssp SCEE--EE-EECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred ccce--ee-ccccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeE
Confidence 3322 22 244678888999999999999999999999999876655 466889999999 9999999996 999999
Q ss_pred eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCC
Q 011452 356 FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSG 435 (485)
Q Consensus 356 l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~ 435 (485)
+.+|... |..++++ +++|++++. |++|+|||+.+++....+.+|..
T Consensus 213 ~~~~~~~-----v~~~~~~--~~~l~s~s~-----------d~~i~iwd~~~~~~~~~~~~~~~---------------- 258 (342)
T d2ovrb2 213 LTGHQSL-----TSGMELK--DNILVSGNA-----------DSTVKIWDIKTGQCLQTLQGPNK---------------- 258 (342)
T ss_dssp ECCCCSC-----EEEEEEE--TTEEEEEET-----------TSCEEEEETTTCCEEEEECSTTS----------------
T ss_pred ecccccc-----eeEEecC--CCEEEEEcC-----------CCEEEEEecccccccccccccce----------------
Confidence 9999876 7777665 569999997 79999999999999999988763
Q ss_pred CccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 436 SCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
| . ..+.++.|+ ++.|+||+.||+|+|||.
T Consensus 259 ------~--~-----------~~~~~~~~~--~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 259 ------H--Q-----------SAVTCLQFN--KNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp ------C--S-----------SCEEEEEEC--SSEEEEEETTSEEEEEET
T ss_pred ------e--e-----------eceeecccC--CCeeEEEcCCCEEEEEEC
Confidence 1 0 266666665 569999999999999984
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.8e-35 Score=283.99 Aligned_cols=281 Identities=11% Similarity=0.095 Sum_probs=216.2
Q ss_pred ceEEEEEe--cCEEEEEeCCC-eEEeeecccC--cEEEEeecCCcccEEEEEEee--CCCEEEEEEeecCCCCcccceeE
Q 011452 97 KIIEIVAA--RDIVFALAQSG-VCAAFCRETN--QRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dg-tiklW~~~tG--~~l~tl~g~~~~~i~sv~~sp--dg~~Las~S~d~~~d~stL~~~t 169 (485)
.+..+.|. ++.||.++.+. .++.|+.... ..+.++.+++...|.+|+|+| +|++||+++. | ++
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~----D------g~ 88 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE----S------GK 88 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET----T------SE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeC----C------CC
Confidence 34455555 88998876554 4688875543 457778885667899999998 5789988774 4 59
Q ss_pred EEEeEeccCCcCcccce-----eeeccccCceEEEEeCCCCeEEEEee--CCCcEEEeecCCCeEEEEEcC--CcEEEEE
Q 011452 170 TRIEYIRRGKPDAGFAL-----FESESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD--KNVQEIK 240 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~l-----f~~~~~~~~~~V~Fs~pnG~~Las~s--~D~tiKlWdl~~g~~l~tl~~--~~V~~Va 240 (485)
++||++..++....... +. .+...+..|+|+ ++|+.|++++ .|+.+++|++++++++.++.+ ..|.+++
T Consensus 89 i~iWd~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~s-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 166 (325)
T d1pgua1 89 VIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWD-FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACH 166 (325)
T ss_dssp EEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEEC-TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEE
T ss_pred EEEeeecCCcceeeeecccccccc-cccCcEEEEEEC-CCCCccceeeccccceEEEEeecccccceeeeeccccccccc
Confidence 99999977765321110 11 133446689998 7999988775 478899999999999999864 5899999
Q ss_pred EcCCc-eEEEEEcCCCCeeEEEEecCCCeEEEEee---cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec
Q 011452 241 ISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFN---HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS 316 (485)
Q Consensus 241 fSpg~-~ll~sss~~~D~tIklWdi~tG~~L~tl~---~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l 316 (485)
|+|++ .++++++ .|++|++||+.+++...++. .|...+.+|+|+|..+..+++++.|++|+|||+++++++.++
T Consensus 167 ~~~~~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l 244 (325)
T d1pgua1 167 LKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI 244 (325)
T ss_dssp ECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred ccccccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccc
Confidence 99844 4455544 34899999999999888775 445568899997544567777899999999999999999999
Q ss_pred ccCCCceEEEEEc---CCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC-CEEEEEecCCCCC
Q 011452 317 RTEFMTPSAFIFL---YENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ-DLIISYCKADSDD 390 (485)
Q Consensus 317 ~gh~~~v~avaFs---pdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG-~~LaS~s~d~~~d 390 (485)
.+|...+..++|+ |||++|+|++ |++|+|||++ |++++++..|.... .+..+++.+++ .+|+|+|.
T Consensus 245 ~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~s~s~----- 316 (325)
T d1pgua1 245 EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL---GNQQVGVVATGNGRIISLSL----- 316 (325)
T ss_dssp CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCG---GGCEEEEEEEETTEEEEEET-----
T ss_pred cccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcc---cCeEEEEEECCCCEEEEEEC-----
Confidence 9999888877776 8999999999 9999999996 99999998876541 13455555433 47899987
Q ss_pred CCCcCCCCeEEEEeC
Q 011452 391 PLAEGNAGSINISNI 405 (485)
Q Consensus 391 ~~~~~~DgtIklWdl 405 (485)
||+|+||||
T Consensus 317 ------dg~i~vwdl 325 (325)
T d1pgua1 317 ------DGTLNFYEL 325 (325)
T ss_dssp ------TSCEEEEET
T ss_pred ------CCEEEEEEC
Confidence 799999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-36 Score=276.25 Aligned_cols=287 Identities=11% Similarity=0.001 Sum_probs=205.9
Q ss_pred EEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee-eccccCceEEEEeCCCC
Q 011452 127 RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE-SESLKWPGFVEFDDVNG 205 (485)
Q Consensus 127 ~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~-~~~~~~~~~V~Fs~pnG 205 (485)
.+. +..+|++.|.+|+|+|+|+.||++|. | ++++||++..++... .+.. .++...+..|+|+++++
T Consensus 3 ~v~-~~~~h~d~I~~l~fsp~~~~L~s~s~----D------g~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~f~~~~~ 69 (342)
T d1yfqa_ 3 IVQ-IEQAPKDYISDIKIIPSKSLLLITSW----D------GSLTVYKFDIQAKNV--DLLQSLRYKHPLLCCNFIDNTD 69 (342)
T ss_dssp EEE-CSSCCSSCEEEEEEEGGGTEEEEEET----T------SEEEEEEEETTTTEE--EEEEEEECSSCEEEEEEEESSS
T ss_pred eEE-cCCCCCCCEEEEEEeCCCCEEEEEEC----C------CeEEEEEccCCCcce--EEEEecCCCCCEEEEEEeCCCC
Confidence 344 34459999999999999999999874 4 599999997765421 1121 13455677899986668
Q ss_pred eEEEEeeCCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEE----eecCCc
Q 011452 206 KVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS----FNHLLH 278 (485)
Q Consensus 206 ~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~t----l~~~~~ 278 (485)
.+|++|+.|++|++|++..+........ .......+.++...+++.+ .|+++++||+.++..... +..+..
T Consensus 70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAAS--WDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEE--TTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred CEEEEcccccceeeeecccccccccccccccccccccccccccccccccc--cccccceeeccccccceeeecccccccc
Confidence 8999999999999999998776655542 2334444454444444433 348999999876554333 322222
Q ss_pred ce--eEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE---ecccCCCceEEEE-EcCCCcEEEEEe-CCcEEEEeCC-C
Q 011452 279 RN--KKVDFIEQFNEKLLVKQENENLQILDVRNFELTE---VSRTEFMTPSAFI-FLYENQLFLTFR-NRTVAVWNFR-G 350 (485)
Q Consensus 279 ~~--~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~---~l~gh~~~v~ava-Fspdg~llaS~s-D~TIklWd~~-G 350 (485)
.. ....+ .+.+..+++++.|++|++||+.+++... ....+...+.+.+ +++++..+++++ |+.|.+|+++ .
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~ 226 (342)
T d1yfqa_ 148 KVKNKIFTM-DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp SSCCCEEEE-EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred cceeeeeee-eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCC
Confidence 21 23333 3557788899999999999998775432 2234444555554 567888899999 9999999974 2
Q ss_pred cE------EEE---------eecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 351 EL------VTS---------FEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 351 ~l------l~t---------l~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
.. ... ..+|... |++|+|+|+|++||||+. ||+|+|||+.+++++.++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----v~~l~~sp~~~~lasg~~-----------Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 227 GDDYNSSKRFAFRCHRLNLKDTNLAYP-----VNSIEFSPRHKFLYTAGS-----------DGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp CCSTTCTTCEEEECCCCCTTCCSSCCC-----EEEEEECTTTCCEEEEET-----------TSCEEEEETTTTEEEEECC
T ss_pred cceeeccccceeeeeeeccCCCccccc-----ceeEEecCCccEEEEECC-----------CCEEEEEECCCCcEEEEec
Confidence 11 111 1233333 899999999999999997 7999999999999999997
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.|. .+..++|+|+|+.|++|+.|.++++|.
T Consensus 291 ~~~---------------------------------------~~~~~~~s~~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 291 KFN---------------------------------------EDSVVKIACSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCS---------------------------------------SSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred CCC---------------------------------------CCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence 654 455688999999999999999998885
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-33 Score=280.84 Aligned_cols=275 Identities=9% Similarity=0.041 Sum_probs=196.9
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccCcE------EEEeecCCcccEE------EEEEee-CCCEEEEEEeecCC
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQR------ICFLNVTADEVIR------SLFYNK-NNDSLITVSVYASD 160 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~------l~tl~g~~~~~i~------sv~~sp-dg~~Las~S~d~~~ 160 (485)
|...|.+|++++++|+++|.|++||+||..+++. ...... |...+. .+..++ ++..+++++ .
T Consensus 13 H~~~I~~v~~~~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~ 87 (393)
T d1sq9a_ 13 HDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFV-HKSGLHHVDVLQAIERDAFELCLVATTS----F 87 (393)
T ss_dssp SSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEEC-CTTCEEEEEEEEEEETTTEEEEEEEEEE----T
T ss_pred ccCccEEEEEeCCEEEEEECCCeEEEEECCCCCCCcccceeEeeee-ccCCceEeeeEeeeccCCCCCcEEEEEe----C
Confidence 7888999999999999999999999999776542 111111 222222 222221 233455544 3
Q ss_pred CCcccceeEEEEeEeccCCcCcccceeee------ccccCceEEEEeC----CCCeEEEEeeCCCcEEEeecCCCe----
Q 011452 161 NFSSLRCRSTRIEYIRRGKPDAGFALFES------ESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYT---- 226 (485)
Q Consensus 161 d~stL~~~t~~lw~i~~G~~~~~~~lf~~------~~~~~~~~V~Fs~----pnG~~Las~s~D~tiKlWdl~~g~---- 226 (485)
| +++++|++..+........... ........++|.. +.+.++++++.|++++|||+....
T Consensus 88 d------g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~ 161 (393)
T d1sq9a_ 88 S------GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 161 (393)
T ss_dssp T------SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred C------CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccc
Confidence 4 5899999866554211110000 0111223456642 236889999999999999974211
Q ss_pred -----------EEEEEc-----CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee------cCCcceeEEE
Q 011452 227 -----------MLYSIS-----DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN------HLLHRNKKVD 284 (485)
Q Consensus 227 -----------~l~tl~-----~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~------~~~~~~~~V~ 284 (485)
+..... ...+.+|+|||++.++++ +.|++|+|||+++|+++.++. +|...|.+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~lasg---s~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~ 238 (393)
T d1sq9a_ 162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG---FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238 (393)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE---CTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEE
T ss_pred eeeeeeccceecccceecccCCCCcEEEEEECCCCEEEEE---eCCCcEEEEeecccccccccccccccccccceEEEcc
Confidence 111111 246899999999877644 356899999999999987654 6788899999
Q ss_pred EEecCCCEEEEEeCCCc---EEEEECCCCeeEEecc-------------cCCCceEEEEEcCCCcEEEEEe-CCcEEEEe
Q 011452 285 FIEQFNEKLLVKQENEN---LQILDVRNFELTEVSR-------------TEFMTPSAFIFLYENQLFLTFR-NRTVAVWN 347 (485)
Q Consensus 285 f~~~~~~~lls~s~D~t---IkIWDv~tg~~~~~l~-------------gh~~~v~avaFspdg~llaS~s-D~TIklWd 347 (485)
|+ |++..|++++.|++ |+|||+++++++.++. ||...|++++|+|||++|+|++ |++|||||
T Consensus 239 ~s-pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd 317 (393)
T d1sq9a_ 239 FS-PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 317 (393)
T ss_dssp EC-SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred cc-cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEE
Confidence 97 78899999998875 9999999999888774 8999999999999999999999 99999999
Q ss_pred CC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 348 FR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 348 ~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
++ |+++++|+||....... ...++|+|+|+.+++++
T Consensus 318 ~~~g~~~~~l~gH~~~v~~~-~~~~~~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 318 VKTKERITTLNMHCDDIEIE-EDILAVDEHGDSLAEPG 354 (393)
T ss_dssp TTTTEEEEEEECCGGGCSSG-GGCCCBCTTSCBCSSCC
T ss_pred CCCCCEEEEECCcCCcccCC-ccEEEECCCCCEEEEcc
Confidence 96 99999999998763222 24578888888777653
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=100.00 E-value=2.2e-34 Score=274.15 Aligned_cols=306 Identities=10% Similarity=-0.023 Sum_probs=226.9
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
|++||+++ +|.+.+|+.++|+.++ + .|...|++++|||||+.|+++|.+ ++ +.+.+|++..|++.
T Consensus 15 G~~~a~~~-~g~v~v~d~~~~~~~~-~--~~~~~v~~~~~spDg~~l~~~~~~--~g------~~v~v~d~~~~~~~--- 79 (360)
T d1k32a3 15 GDLIAFVS-RGQAFIQDVSGTYVLK-V--PEPLRIRYVRRGGDTKVAFIHGTR--EG------DFLGIYDYRTGKAE--- 79 (360)
T ss_dssp GGCEEEEE-TTEEEEECTTSSBEEE-C--SCCSCEEEEEECSSSEEEEEEEET--TE------EEEEEEETTTCCEE---
T ss_pred CCEEEEEE-CCeEEEEECCCCcEEE-c--cCCCCEEEEEECCCCCEEEEEEcC--CC------CEEEEEECCCCcEE---
Confidence 89888877 5799999999887765 3 378889999999999999998753 23 68999999888762
Q ss_pred ceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEc--------CC
Q 011452 185 ALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTK--------AS 254 (485)
Q Consensus 185 ~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss--------~~ 254 (485)
.+. .+...+..++|+ |||++|++++.|+++++|++.++++...+. ...+.+++|||++.+++++. ..
T Consensus 80 ~~~--~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 80 KFE--ENLGNVFAMGVD-RNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp ECC--CCCCSEEEEEEC-TTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred Eee--CCCceEEeeeec-ccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 222 244567789998 899999999999999999999999877775 45788999999776665432 33
Q ss_pred CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCee-------EEecccCCCceEEEE
Q 011452 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFEL-------TEVSRTEFMTPSAFI 327 (485)
Q Consensus 255 ~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~-------~~~l~gh~~~v~ava 327 (485)
.+..+++||+++++....+. |.+.+..++|+ |++..|++++.|+++++||.....+ ...+..|...+..+.
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~-~~~~~~~~~~s-pdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATT-ENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK 234 (360)
T ss_dssp CEEEEEEEETTTTEEEECSC-SSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred cccceeeeccccCceeeecc-ccccccccccc-CCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccce
Confidence 45789999999988766555 45677788886 7899999999999999999876543 233445666677778
Q ss_pred EcCCCcEEEEEe-CCc---EEEEeC--CCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEE
Q 011452 328 FLYENQLFLTFR-NRT---VAVWNF--RGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSIN 401 (485)
Q Consensus 328 Fspdg~llaS~s-D~T---IklWd~--~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIk 401 (485)
|+|+++.++++. +.. .++|.+ .+.....+..|.... ..+...++++++.++++++. +++|+
T Consensus 235 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----------~~~i~ 301 (360)
T d1k32a3 235 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI--LIYSVPVHGEFAAYYQGAPE-----------KGVLL 301 (360)
T ss_dssp CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEE--EEEECCCCCSHHHHHHCCCC-----------CEEEE
T ss_pred ECCCcCcccccceeecccccceeecccCcCceeEeeecCCCc--eEEEEEecCCCeeEEEecCC-----------CCEEE
Confidence 899999888776 432 345544 432233333333220 00333333444456666654 79999
Q ss_pred EEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEE
Q 011452 402 ISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVH 481 (485)
Q Consensus 402 lWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVk 481 (485)
+||+.++++. .|. ..|.+++|||||+.|++++.||+|+
T Consensus 302 ~~d~~~~~~~----~~~--------------------------------------~~v~~~~~SpDG~~l~~~~~Dg~i~ 339 (360)
T d1k32a3 302 KYDVKTRKVT----EVK--------------------------------------NNLTDLRLSADRKTVMVRKDDGKIY 339 (360)
T ss_dssp EEETTTCCEE----EEE--------------------------------------EEEEEEEECTTSCEEEEEETTSCEE
T ss_pred EEECCCCeEE----Eec--------------------------------------CCcCEEEECCCCCEEEEEECCCeEE
Confidence 9999987753 233 1688999999999999999999999
Q ss_pred EccC
Q 011452 482 VWSN 485 (485)
Q Consensus 482 lWd~ 485 (485)
|||.
T Consensus 340 v~d~ 343 (360)
T d1k32a3 340 TFPL 343 (360)
T ss_dssp EEES
T ss_pred EEEC
Confidence 9984
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.7e-33 Score=284.38 Aligned_cols=325 Identities=8% Similarity=0.022 Sum_probs=223.3
Q ss_pred CEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 106 ~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
-++++.+.||+|++||..||+++.++.. +. .+.+|+|||||++|++++. | +++++||+.+|++.....
T Consensus 33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~-g~-~~~~vafSPDGk~l~~~~~----d------~~v~vwd~~t~~~~~~~~ 100 (426)
T d1hzua2 33 LFSVTLRDAGQIALVDGDSKKIVKVIDT-GY-AVHISRMSASGRYLLVIGR----D------ARIDMIDLWAKEPTKVAE 100 (426)
T ss_dssp EEEEEETTTTEEEEEETTTCSEEEEEEC-CS-SEEEEEECTTSCEEEEEET----T------SEEEEEETTSSSCEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeC-CC-CeeEEEECCCCCEEEEEeC----C------CCEEEEEccCCceeEEEE
Confidence 3568899999999999999999999987 44 5899999999999998774 3 489999999998632111
Q ss_pred eeee--ccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEcC-------------CcEEEEEEcCCceEEE
Q 011452 186 LFES--ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-------------KNVQEIKISPGIMLLI 249 (485)
Q Consensus 186 lf~~--~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~~-------------~~V~~VafSpg~~ll~ 249 (485)
... ++...+.+++|+ |||++| +++..|+++++||+++++++..+.. .....+++++++..+.
T Consensus 101 -i~~~~~~~~~~~s~~~s-pDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~ 178 (426)
T d1hzua2 101 -IKIGIEARSVESSKFKG-YEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI 178 (426)
T ss_dssp -EECCSEEEEEEECCSTT-CTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred -EeCCCCCcceEEeeeec-CCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence 111 222333456776 799986 5556899999999999998877642 2345566665444444
Q ss_pred EEcCCCCeeEEEEecCCCeEEE-EeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEeccc--CCCceEE
Q 011452 250 FTKASGHVPLKILSIEDGTVLK-SFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRT--EFMTPSA 325 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~-tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~g--h~~~v~a 325 (485)
.+..+ ...+.+++..++..+. +...+......++|. |++.+++++. .+..+.+||..++++...... +......
T Consensus 179 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
T d1hzua2 179 VNVKE-TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD-SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 256 (426)
T ss_dssp EEETT-TTEEEEEECSSSSSCEEEEEECCSSEEEEEEC-TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCC
T ss_pred EecCC-CCeEEEEEeccccceeeEEeccCCccEeeeEC-CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccce
Confidence 33322 2456666666555332 233455677889986 6788888875 788899999999998776532 2222333
Q ss_pred EEEcCCCc--EEE-EEe-CCcEEEEeCC--------CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCC
Q 011452 326 FIFLYENQ--LFL-TFR-NRTVAVWNFR--------GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLA 393 (485)
Q Consensus 326 vaFspdg~--lla-S~s-D~TIklWd~~--------G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~ 393 (485)
..|.+++. .++ +.+ |++|.+|+.. ++++.+|++|... +++|+|||||++|+....- ...
T Consensus 257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~-----v~~v~~sPdg~~l~v~~~~----~~s 327 (426)
T d1hzua2 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-----SLFIKTHPKSSHLYVDTTF----NPD 327 (426)
T ss_dssp EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC-----CCCEECCTTCSEEEECCTT----CSS
T ss_pred eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCc-----eeEEEcCCCCceEEEeecC----CCC
Confidence 33333322 222 233 7777777742 5899999999877 8999999999999953210 000
Q ss_pred cCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE-E
Q 011452 394 EGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI-Y 472 (485)
Q Consensus 394 ~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L-a 472 (485)
++.|+||+|||+.||++++++..+.. . ....++-..|.+++|||||++| +
T Consensus 328 ~~~~~tv~vwd~~t~~~~~~~~~~~~-----~------------------------~~~~~~~~rv~~~~fSpDGk~i~v 378 (426)
T d1hzua2 328 ARISQSVAVFDLKNLDAKYQVLPIAE-----W------------------------ADLGEGAKRVVQPEYNKRGDEVWF 378 (426)
T ss_dssp HHHHTCEEEEETTCTTSCCEEECHHH-----H------------------------HCCCSSCCCEEEEEECSSSSEEEE
T ss_pred cccCCEEEEEECCCCCcCeEEeccch-----h------------------------cccCCCCccEEEEEECCCCCEEEE
Confidence 12379999999999998888754321 0 0000111379999999999976 4
Q ss_pred E----ecCCCcEEEcc
Q 011452 473 T----GNRHGLVHVWS 484 (485)
Q Consensus 473 S----gs~DgtVklWd 484 (485)
| ++.|++|+|||
T Consensus 379 s~~~~~~~~~~i~v~D 394 (426)
T d1hzua2 379 SVWNGKNDSSALVVVD 394 (426)
T ss_dssp EECCCTTSCCEEEEEE
T ss_pred EEecCCCCCCeEEEEE
Confidence 4 35799999998
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3e-32 Score=255.66 Aligned_cols=258 Identities=11% Similarity=0.100 Sum_probs=203.6
Q ss_pred cccceEEEEEecCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEe
Q 011452 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (485)
Q Consensus 94 ~~s~V~~i~~s~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw 173 (485)
|..+|.+|.|+. ||+++.||+|++||..+++ ..|...|.++++++++. ++++|. | .++++|
T Consensus 12 H~~~I~~l~~s~--l~sgs~Dg~v~~Wd~~~~~------~~h~~~V~~~~~~~~~~-~~s~s~---D-------~~v~~w 72 (287)
T d1pgua2 12 HNKGITALTVNP--LISGSYDGRIMEWSSSSMH------QDHSNLIVSLDNSKAQE-YSSISW---D-------DTLKVN 72 (287)
T ss_dssp CSSCEEEEETTT--TEEEETTSCEEETTTTEEE------CCCCSCEEEEECCSTTC-CEEEET---T-------TEEEET
T ss_pred CCCceEEEEECc--EEEEeCCCeEEEEECCCCC------CCCCCCEEEEEecCCCe-EEEEee---c-------cccccc
Confidence 555566666543 8999999999999988543 34888999999998764 677663 3 489999
Q ss_pred EeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcC-CceEEEEE
Q 011452 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLLIFT 251 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSp-g~~ll~ss 251 (485)
++...++ ...+..++++ +++..++.++ ++.+.+|+..+++.+.++.. ..+ .+++| +..+++++
T Consensus 73 ~~~~~~~-----------~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~ 137 (287)
T d1pgua2 73 GITKHEF-----------GSQPKVASAN-NDGFTAVLTN-DDDLLILQSFTGDIIKSVRLNSPG--SAVSLSQNYVAVGL 137 (287)
T ss_dssp TEEEEEC-----------SSCEEEEEEC-SSSEEEEEET-TSEEEEEETTTCCEEEEEECSSCE--EEEEECSSEEEEEE
T ss_pred ccccccc-----------ccceeeeeec-cCCceEEEee-cccceeeeccceeeeeecccccee--eeeeccCcceeeec
Confidence 9754332 1234567886 7888877765 66788999999998888863 344 45564 45555554
Q ss_pred cCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE-ecccCCCceEEEEEc
Q 011452 252 KASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE-VSRTEFMTPSAFIFL 329 (485)
Q Consensus 252 s~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~-~l~gh~~~v~avaFs 329 (485)
. .++.|++|++.+.+....+. .|...+..|+|+ |++.+|++++.|+.|+|||+.+++.+. .+.+|...|.+++|+
T Consensus 138 ~--~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~ 214 (287)
T d1pgua2 138 E--EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS-PSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWK 214 (287)
T ss_dssp T--TTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC-TTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC
T ss_pred c--ccceeeeeeccccceeeeeeeccCCceeEEEec-cCccccccccccccccceeecccccccccccccccccceeeec
Confidence 3 33689999998877777665 466778999996 788899999999999999999998765 468899999999998
Q ss_pred CC----------CcEEEEEe-CCcEEEEeC-C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 330 YE----------NQLFLTFR-NRTVAVWNF-R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 330 pd----------g~llaS~s-D~TIklWd~-~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
|+ +++|||++ |++|+|||+ + ++++..+.+|... |++|+|+||+ .|+|++.
T Consensus 215 p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~-----V~~v~~~~~~-~l~s~g~----------- 277 (287)
T d1pgua2 215 PAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDG-----VNNLLWETPS-TLVSSGA----------- 277 (287)
T ss_dssp CCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTC-----EEEEEEEETT-EEEEEET-----------
T ss_pred ccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCC-----eEEEEECCCC-EEEEEEC-----------
Confidence 75 56899999 999999999 4 7789999999987 9999999997 5788876
Q ss_pred CCeEEEEeC
Q 011452 397 AGSINISNI 405 (485)
Q Consensus 397 DgtIklWdl 405 (485)
|++||||||
T Consensus 278 D~~v~iW~i 286 (287)
T d1pgua2 278 DACIKRWNV 286 (287)
T ss_dssp TSCEEEEEE
T ss_pred CCeEEEEEE
Confidence 799999996
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=9.1e-33 Score=255.91 Aligned_cols=279 Identities=8% Similarity=0.069 Sum_probs=197.8
Q ss_pred cccceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEee--cCCcccEEEEEEeeCCC-EEEEEEeecCCCCccccee
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCR 168 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl~--g~~~~~i~sv~~spdg~-~Las~S~d~~~d~stL~~~ 168 (485)
|+..|.+|.|+ +++||++|.||+||+||++++.....+. ..|...|.+|+|+|++. .|++++ .| +
T Consensus 10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~----~d------~ 79 (342)
T d1yfqa_ 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT----VQ------G 79 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE----TT------S
T ss_pred CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc----cc------c
Confidence 45667777777 9999999999999999987665432221 13888999999999865 576655 34 5
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe----EEEEEcC----CcEEEEE
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISD----KNVQEIK 240 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~----~l~tl~~----~~V~~Va 240 (485)
++++|++..+.... ..............+ .+++..+++++.|+++++||+.++. ....... .....+.
T Consensus 80 ~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 80 EILKVDLIGSPSFQ---ALTNNEANLGICRIC-KYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp CEEEECSSSSSSEE---ECBSCCCCSCEEEEE-EETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred ceeeeecccccccc---ccccccccccccccc-ccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 99999987766521 111111111123334 3678889999999999999986543 2233321 2344556
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEe---ecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeE----
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF---NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELT---- 313 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl---~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~---- 313 (485)
+.+....++.++ .|++|++||+.+++....+ ..+......+.+.+.++..+++++.|+.+++|++......
T Consensus 156 ~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 156 MDTNSSRLIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp EEECSSEEEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred eeccCCceeeec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc
Confidence 665333333433 3489999999877754332 2333445566666666778888999999999998754321
Q ss_pred -----------EecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE
Q 011452 314 -----------EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI 380 (485)
Q Consensus 314 -----------~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L 380 (485)
....+|...|++++|+|++++|||++ ||+|+|||++ ++++.++..|.. +..++|+|+|++|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~------~~~~~~s~~~~~l 307 (342)
T d1yfqa_ 234 KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE------DSVVKIACSDNIL 307 (342)
T ss_dssp TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS------SEEEEEEECSSEE
T ss_pred ccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCC------CEEEEEEeCCCEE
Confidence 11246777899999999999999999 9999999996 999999975432 4678999999999
Q ss_pred EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 381 ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 381 aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
|+++. |+++|+|..
T Consensus 308 ~~a~s-----------dd~~~~~~~ 321 (342)
T d1yfqa_ 308 CLATS-----------DDTFKTNAA 321 (342)
T ss_dssp EEEEE-----------CTHHHHCSS
T ss_pred EEEEc-----------CCcEEEeee
Confidence 99987 688999864
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.97 E-value=4.4e-30 Score=263.41 Aligned_cols=313 Identities=11% Similarity=0.044 Sum_probs=219.5
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
++++.+.||++++||.+|+++++++..++ .+.+|+|||||++|+++|. | +++++||+.+++......+
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fSpDG~~l~~~s~----d------g~v~~~d~~t~~~~~~~~i 101 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIGR----D------GKVNMIDLWMKEPTTVAEI 101 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEET----T------SEEEEEETTSSSCCEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCCC--CeeEEEECCCCCEEEEEcC----C------CCEEEEEeeCCCceEEEEE
Confidence 36999999999999999999999998743 5999999999999999774 3 4999999988876321111
Q ss_pred eee-ccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEcC-------------CcEEEEEEcCCc-eEEEE
Q 011452 187 FES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-------------KNVQEIKISPGI-MLLIF 250 (485)
Q Consensus 187 f~~-~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~~-------------~~V~~VafSpg~-~ll~s 250 (485)
-.. ++...+.+++|+ |||++| |+++.|++|+|||+++++++.++.. .....|++||++ .++++
T Consensus 102 ~~~~~~~~~~~s~~~S-pDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs 180 (432)
T d1qksa2 102 KIGSEARSIETSKMEG-WEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVN 180 (432)
T ss_dssp ECCSEEEEEEECCSTT-CTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred ecCCCCCCeEEecccC-CCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEE
Confidence 110 122222345666 799975 8889999999999999998877642 356789999755 44444
Q ss_pred EcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecc-----cCCCce
Q 011452 251 TKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSR-----TEFMTP 323 (485)
Q Consensus 251 ss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~-----gh~~~v 323 (485)
.. .+++|.+||..+++.++... .+......++|+ |++.++++++ .++++.+||.++++...... .|....
T Consensus 181 ~~--~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s-pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~ 257 (432)
T d1qksa2 181 VK--ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD-GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257 (432)
T ss_dssp ET--TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC-TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred Ec--cCCeEEEEEccCCCcceEEEEcccCccccceEC-CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence 33 35799999999998776544 233456789996 7888888875 78899999999998876652 255566
Q ss_pred EEEEEcCCCcEEEEEe--CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCC-------------
Q 011452 324 SAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADS------------- 388 (485)
Q Consensus 324 ~avaFspdg~llaS~s--D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~------------- 388 (485)
..+.+++.+...++.. |++|.+|+.... .+.+|... |..++|+|+|..+++++.++.
T Consensus 258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~---~~~~~~~~-----v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~ 329 (432)
T d1qksa2 258 ANFVHPTFGPVWATSHMGDDSVALIGTDPE---GHPDNAWK-----ILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA 329 (432)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCTT---TCTTTBTS-----EEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred cceecCCCCceecccccCCceEEecccccc---cccccccE-----EEEEEEcCCCCeEEEEecCCccceeecccCCCCC
Confidence 7777787888777776 889999987522 12344333 667777777776666654100
Q ss_pred -----------CCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccC
Q 011452 389 -----------DDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALE 457 (485)
Q Consensus 389 -----------~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 457 (485)
+..+.++.|+++|+||+.++..+ ..|. .
T Consensus 330 ~~~~sv~vpDg~~la~~s~d~~~k~w~~~~~~~l---~~~~--------------------------------------~ 368 (432)
T d1qksa2 330 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGI---TEGQ--------------------------------------P 368 (432)
T ss_dssp HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTC---CSSC--------------------------------------C
T ss_pred CeeeEEEEEechhhcccccCCceEeccccccccc---CCCC--------------------------------------C
Confidence 00122233455555554433222 1222 3
Q ss_pred CeEEEEEcCCCCEEEEec-----CCCcEEEcc
Q 011452 458 DITALFYDEDRNEIYTGN-----RHGLVHVWS 484 (485)
Q Consensus 458 ~V~sl~fspDg~~LaSgs-----~DgtVklWd 484 (485)
.|.+++|||||++|+.+. .|+.|+|||
T Consensus 369 ~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D 400 (432)
T d1qksa2 369 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 400 (432)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred cEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence 788999999999885553 578899998
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=4.5e-28 Score=225.08 Aligned_cols=270 Identities=14% Similarity=0.135 Sum_probs=213.9
Q ss_pred EEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee
Q 011452 109 FALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (485)
Q Consensus 109 as~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~ 188 (485)
++.+.|++|++||+++|+.+.++..+ ...+.|+|||||++|+.++ ..+ .++.+||+.+++... .+.
T Consensus 6 V~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~spdG~~l~v~~--~~~-------~~i~v~d~~t~~~~~---~~~ 71 (301)
T d1l0qa2 6 IANSESDNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVAN--AHS-------NDVSIIDTATNNVIA---TVP 71 (301)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEE--GGG-------TEEEEEETTTTEEEE---EEE
T ss_pred EEECCCCEEEEEECCCCeEEEEEECC--CCceEEEEeCCCCEEEEEE--CCC-------CEEEEEECCCCceee---eee
Confidence 46789999999999999999999763 2479999999999886543 223 489999998887622 233
Q ss_pred eccccCceEEEEeCCCCe-EEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCC
Q 011452 189 SESLKWPGFVEFDDVNGK-VLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIED 266 (485)
Q Consensus 189 ~~~~~~~~~V~Fs~pnG~-~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~t 266 (485)
. ...+..++|+ ++|+ +++++..|+.+++||+.+++++..+. ...+..++|+|++..+..+. ..+.++.+|+..+
T Consensus 72 ~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~-~~~~~~~~~~~~~ 147 (301)
T d1l0qa2 72 A--GSSPQGVAVS-PDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTN-NGDKTVSVINTVT 147 (301)
T ss_dssp C--SSSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEE-TTTTEEEEEETTT
T ss_pred c--cccccccccc-cccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeee-ccccceeeeeccc
Confidence 2 2346689998 5665 56677789999999999999988886 45788999998655443322 3458999999999
Q ss_pred CeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CC
Q 011452 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NR 341 (485)
Q Consensus 267 G~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~ 341 (485)
++.+.++..+ .....+++. +++..++++. .+..+.+|+....+....+..+ ..+..++|+++|+.++.+. ++
T Consensus 148 ~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~ 224 (301)
T d1l0qa2 148 KAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFN 224 (301)
T ss_dssp TEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCC
T ss_pred cceeeecccC-CCceEEEee-ccccceeeecccccccccccccceeeeeccccc-CCcceeeccccccccccccccceee
Confidence 9999999864 456778886 6777787775 6688889999999888887655 4688899999999876553 46
Q ss_pred cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 342 TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 342 TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+|++||.. ++++.++..+. . +..|+|||||++| ++++. |++|++||+.||++++++.-
T Consensus 225 ~v~v~D~~t~~~~~~~~~~~-~-----~~~va~spdg~~l~va~~~-----------~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 225 TVSMIDTGTNKITARIPVGP-D-----PAGIAVTPDGKKVYVALSF-----------CNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp EEEEEETTTTEEEEEEECCS-S-----EEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeecCCCeEEEEEcCCC-C-----EEEEEEeCCCCEEEEEECC-----------CCeEEEEECCCCeEEEEEeC
Confidence 89999996 99999987653 2 7899999999987 56554 79999999999999999963
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.97 E-value=1.1e-27 Score=222.50 Aligned_cols=254 Identities=10% Similarity=0.110 Sum_probs=206.1
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEEEcC-CcEEEEEEcCCc
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGI 245 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~tl~~-~~V~~VafSpg~ 245 (485)
.++.+||+.+|++.+ .+.. -..|..|+|+ |||++| ++++.|++|++||+++++++.++.. ..+..++|++++
T Consensus 12 ~~v~v~D~~t~~~~~---~i~~--g~~p~~va~s-pdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~ 85 (301)
T d1l0qa2 12 DNISVIDVTSNKVTA---TIPV--GSNPMGAVIS-PDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDG 85 (301)
T ss_dssp TEEEEEETTTTEEEE---EEEC--SSSEEEEEEC-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTS
T ss_pred CEEEEEECCCCeEEE---EEEC--CCCceEEEEe-CCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccc
Confidence 489999999998733 2332 2457789998 799876 6788899999999999999999874 578999999754
Q ss_pred -eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCce
Q 011452 246 -MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTP 323 (485)
Q Consensus 246 -~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v 323 (485)
.++++.. .+..+.+|+..+++++..+..+ .....+.|+ +++..++++ ..|.++.+||..+++.+..+..+ ..+
T Consensus 86 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 160 (301)
T d1l0qa2 86 KQVYVTNM--ASSTLSVIDTTSNTVAGTVKTG-KSPLGLALS-PDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (301)
T ss_dssp SEEEEEET--TTTEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred cccccccc--ccceeeecccccceeeeecccc-ccceEEEee-cCCCeeeeeeccccceeeeeccccceeeecccC-CCc
Confidence 4555443 4589999999999999999865 445678875 778887765 58999999999999999888654 468
Q ss_pred EEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeE
Q 011452 324 SAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSI 400 (485)
Q Consensus 324 ~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtI 400 (485)
..++++|+++.++++. ++.+.+|+.. .++...+..+.. ..+++|+|+|+.++.++. .+.+++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~v~~~--------~~~~~~v 226 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAA------PSGIAVNPEGTKAYVTNV--------DKYFNTV 226 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSE------EEEEEECTTSSEEEEEEE--------CSSCCEE
T ss_pred eEEEeeccccceeeecccccccccccccceeeeecccccCC------cceeeccccccccccccc--------cceeeee
Confidence 9999999999888887 5678888886 677777766542 678999999999987764 1346899
Q ss_pred EEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEE-EEecCCCc
Q 011452 401 NISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEI-YTGNRHGL 479 (485)
Q Consensus 401 klWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~L-aSgs~Dgt 479 (485)
++||+.+++++.++..+. .+++|+|||||+.| ++++.|++
T Consensus 227 ~v~D~~t~~~~~~~~~~~---------------------------------------~~~~va~spdg~~l~va~~~~~~ 267 (301)
T d1l0qa2 227 SMIDTGTNKITARIPVGP---------------------------------------DPAGIAVTPDGKKVYVALSFCNT 267 (301)
T ss_dssp EEEETTTTEEEEEEECCS---------------------------------------SEEEEEECTTSSEEEEEETTTTE
T ss_pred eeeecCCCeEEEEEcCCC---------------------------------------CEEEEEEeCCCCEEEEEECCCCe
Confidence 999999999999997654 68899999999987 68889999
Q ss_pred EEEccC
Q 011452 480 VHVWSN 485 (485)
Q Consensus 480 VklWd~ 485 (485)
|++||.
T Consensus 268 i~v~D~ 273 (301)
T d1l0qa2 268 VSVIDT 273 (301)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999983
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=6.3e-29 Score=250.74 Aligned_cols=300 Identities=7% Similarity=-0.013 Sum_probs=206.6
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcEEEEe--e--cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFL--N--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~l~tl--~--g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.|..|+|+ |++|++++.|+++++||++|+++..+. . .+|...+.+++|+|||++|++++. .+ +++
T Consensus 63 ~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~---~~------~~v 133 (426)
T d1hzua2 63 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY---WP------PQF 133 (426)
T ss_dssp SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ES------SEE
T ss_pred CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec---CC------CeE
Confidence 45667776 999999999999999999999855432 2 136678899999999999877653 23 699
Q ss_pred EEeEeccCCcCcccceeeec----------cccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCe--EEEEE-cCCcE
Q 011452 171 RIEYIRRGKPDAGFALFESE----------SLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYT--MLYSI-SDKNV 236 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~~----------~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~--~l~tl-~~~~V 236 (485)
++|+..++++.. ..... .-.....++++ ++++.+.... ..+.+-+++..++. .+..+ .+..+
T Consensus 134 ~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s-~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 209 (426)
T d1hzua2 134 AIMDGETLEPKQ---IVSTRGMTVDTQTYHPEPRVAAIIAS-HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFL 209 (426)
T ss_dssp EEEETTTCCEEE---EEECCEECSSSCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSE
T ss_pred EEEcCCccceeE---EeeccCCCccceeecCCCceeEEEEC-CCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCcc
Confidence 999998887632 11110 01112234444 3444433332 23444445444433 12222 35689
Q ss_pred EEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec--CCcceeEEEEEecCCCEEEEE--eCCCcEEEEECCC---
Q 011452 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRN--- 309 (485)
Q Consensus 237 ~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~--~~~~~~~V~f~~~~~~~lls~--s~D~tIkIWDv~t--- 309 (485)
.+++|+|++.++..+.. .+..+.+|+..+++++..+.. +.+....+.|..+......+. +.|+++.+|+...
T Consensus 210 ~~~~~~~~g~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~ 288 (426)
T d1hzua2 210 ADGGWDSSHRYFMTAAN-NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNH 288 (426)
T ss_dssp EEEEECTTSCEEEEEET-TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTC
T ss_pred EeeeECCCCcEEEeeee-cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccccc
Confidence 99999986555444433 347899999999999988863 223344566654444444443 4789999998665
Q ss_pred ----CeeEEecccCCCceEEEEEcCCCcEEE-------EEe-CCcEEEEeCC-CcEEEEeec------CCCCCCCCCeeE
Q 011452 310 ----FELTEVSRTEFMTPSAFIFLYENQLFL-------TFR-NRTVAVWNFR-GELVTSFED------HLLWHPDCNTNN 370 (485)
Q Consensus 310 ----g~~~~~l~gh~~~v~avaFspdg~lla-------S~s-D~TIklWd~~-G~ll~tl~g------H~~~~~~~~v~s 370 (485)
+++..++.+|...|++++|+|||+.|+ +++ |+||+|||++ |+++.++.. |... ...|..
T Consensus 289 ~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~--~~rv~~ 366 (426)
T d1hzua2 289 PQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEG--AKRVVQ 366 (426)
T ss_dssp TTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSS--CCCEEE
T ss_pred ccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCC--CccEEE
Confidence 478899999999999999999999999 466 8999999995 887766532 2111 122889
Q ss_pred EEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 371 IYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 371 vafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++|||||++|+.++.. ..+.|++|+|||..|+|.++.|+++.
T Consensus 367 ~~fSpDGk~i~vs~~~------~~~~~~~i~v~D~~T~k~~~~i~~~~ 408 (426)
T d1hzua2 367 PEYNKRGDEVWFSVWN------GKNDSSALVVVDDKTLKLKAVVKDPR 408 (426)
T ss_dssp EEECSSSSEEEEEECC------CTTSCCEEEEEETTTTEEEEEECCTT
T ss_pred EEECCCCCEEEEEEec------CCCCCCeEEEEECCCCeEEEEECCCC
Confidence 9999999977433321 12347999999999999999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=4.3e-28 Score=227.58 Aligned_cols=280 Identities=10% Similarity=-0.008 Sum_probs=211.2
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCC-cccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTA-DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~-~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~ 183 (485)
++++++++.|++|++||.++++++.++.... ...+.+++|+|||++|+.++ +.+ ..+.+||+.+|++...
T Consensus 1 ~~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~---~~~------~~v~v~D~~t~~~~~~ 71 (337)
T d1pbyb_ 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS------ESLVKIDLVTGETLGR 71 (337)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT------TEEEEEETTTCCEEEE
T ss_pred CeEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE---CCC------CeEEEEECCCCcEEEE
Confidence 4789999999999999999999999997632 34578999999999886543 233 4899999999987332
Q ss_pred cceeee-ccccCceEEEEeCCCCeEEEEee------------CCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEE
Q 011452 184 FALFES-ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLI 249 (485)
Q Consensus 184 ~~lf~~-~~~~~~~~V~Fs~pnG~~Las~s------------~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~ 249 (485)
..+-.. .....+..++|+ |||+.++.+. .+..+.+||..+++.+.++. ...+..++|+|++..+.
T Consensus 72 ~~~~~~~~~~~~~~~v~~s-~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 150 (337)
T d1pbyb_ 72 IDLSTPEERVKSLFGAALS-PDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLY 150 (337)
T ss_dssp EECCBTTEEEECTTCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEE
T ss_pred EecCCCcccccceeeEEEc-CCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEE
Confidence 111111 122345579998 7999988775 47899999999999998886 45788999999777666
Q ss_pred EEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEe-----------------------cCCCEEEEEeCCCcEEEEE
Q 011452 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE-----------------------QFNEKLLVKQENENLQILD 306 (485)
Q Consensus 250 sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~-----------------------~~~~~lls~s~D~tIkIWD 306 (485)
.++ ..+.+||..++++..++..+.... ...+.+ .+.......+.++.+.+||
T Consensus 151 ~~~----~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (337)
T d1pbyb_ 151 GLG----RDLHVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD 225 (337)
T ss_dssp EES----SSEEEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred EEc----CCcceeeeecCcEEEEeecCCccc-cceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEE
Confidence 644 357899999999999887532211 111100 0111111223456799999
Q ss_pred CCCCeeEEe-cccCCCceEEEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEe
Q 011452 307 VRNFELTEV-SRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYC 384 (485)
Q Consensus 307 v~tg~~~~~-l~gh~~~v~avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s 384 (485)
+.+++.... +..|...+...+++|++.+++.. |++|++||+. ++++.++.. ... +.+++|||||++|++++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~~-~~~-----~~~~~~s~dG~~l~v~~ 298 (337)
T d1pbyb_ 226 LETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHS-----YYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp TTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSC-----CCEEEECTTSCEEEEES
T ss_pred cCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEcC-CCC-----EEEEEECCCCCEEEEEe
Confidence 999987554 45677788999999999988654 7899999996 999988863 333 78999999999999988
Q ss_pred cCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 385 KADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 385 ~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
. |++|+|||+.|+|.+.+|+-.
T Consensus 299 ~-----------~~~i~v~D~~t~~~v~~i~~~ 320 (337)
T d1pbyb_ 299 A-----------LGDLAAYDAETLEKKGQVDLP 320 (337)
T ss_dssp B-----------SSEEEEEETTTCCEEEEEECG
T ss_pred C-----------CCcEEEEECCCCcEEEEEECC
Confidence 6 799999999999999998753
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.96 E-value=8.6e-29 Score=233.28 Aligned_cols=291 Identities=9% Similarity=-0.010 Sum_probs=216.5
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
+++|++++.|++|.+||++|++.+.++...+.....+|+|+|||+.|..+. ..+ .++.+||+.+|+.....
T Consensus 8 ~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~---~~~------~~v~~~d~~t~~~~~~~ 78 (346)
T d1jmxb_ 8 HEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN---NHY------GDIYGIDLDTCKNTFHA 78 (346)
T ss_dssp CEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE---TTT------TEEEEEETTTTEEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEE---CCC------CcEEEEeCccCeeeeee
Confidence 899999999999999999999999998865666789999999999886533 233 58999999988773211
Q ss_pred ceeee--ccccCceEEEEeCCCCeEEEEee------------CCCcEEEeecCCCeEEEEEc----CCcEEEEEEcCCce
Q 011452 185 ALFES--ESLKWPGFVEFDDVNGKVLTYSA------------QDSIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIM 246 (485)
Q Consensus 185 ~lf~~--~~~~~~~~V~Fs~pnG~~Las~s------------~D~tiKlWdl~~g~~l~tl~----~~~V~~VafSpg~~ 246 (485)
.+-.. .....+..++|+ |||+.|..++ .+..+++||..+++....+. ...+..+.+++++.
T Consensus 79 ~~~~~~~~~~~~~~~v~~s-~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 79 NLSSVPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp ESCCSTTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred cccccccccCCceEEEEEe-cCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 11110 122345679998 7999886654 58889999998877544332 35677788899888
Q ss_pred EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEE
Q 011452 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSA 325 (485)
Q Consensus 247 ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~a 325 (485)
+++++ ..+.+|++.+++.+.++..+ .....+.|+ |++..+... ..++++.+++..
T Consensus 158 ~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----------------- 213 (346)
T d1jmxb_ 158 LYVAG-----PDIYKMDVKTGKYTVALPLR-NWNRKGYSA-PDVLYFWPHQSPRHEFSMLYTI----------------- 213 (346)
T ss_dssp EEEES-----SSEEEECTTTCCEEEEECST-TCCCTTBCC-CBCCCCCCCCCTTCEEEEEEEE-----------------
T ss_pred EEEeC-----CcceEEEccCCCEEEEEecC-CCccceEEe-ccccEEEEEecCCCceEeeeee-----------------
Confidence 87652 36899999999999999854 344556664 555555554 466666666532
Q ss_pred EEEcCCCcEEEEEe-CCcEEEEeCC-CcEE-EEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEE
Q 011452 326 FIFLYENQLFLTFR-NRTVAVWNFR-GELV-TSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINI 402 (485)
Q Consensus 326 vaFspdg~llaS~s-D~TIklWd~~-G~ll-~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIkl 402 (485)
..+.+....++++. +.++.+||.. ++.. ..+.+|... +..++++|++.++++... ++|++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~------------~~v~v 276 (346)
T d1jmxb_ 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTEL-----YFTGLRSPKDPNQIYGVL------------NRLAK 276 (346)
T ss_dssp EEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSC-----EEEEEECSSCTTEEEEEE------------SEEEE
T ss_pred eeeccCceeEeeccCCceEEEEECCCCceEEEEeecccce-----eEEEEEeCCCCEEEEecC------------CeEEE
Confidence 23455666667777 8899999996 6654 456667655 889999999999998774 78999
Q ss_pred EeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 403 SNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 403 Wdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
||+.+++++..+.... .+++|+|||||+.||+|+.|++|++
T Consensus 277 ~d~~~~~~~~~~~~~~---------------------------------------~~~~va~s~DG~~l~v~~~d~~v~v 317 (346)
T d1jmxb_ 277 YDLKQRKLIKAANLDH---------------------------------------TYYCVAFDKKGDKLYLGGTFNDLAV 317 (346)
T ss_dssp EETTTTEEEEEEECSS---------------------------------------CCCEEEECSSSSCEEEESBSSEEEE
T ss_pred EECCCCcEEEEEcCCC---------------------------------------CEEEEEEcCCCCEEEEEeCCCcEEE
Confidence 9999999999886322 6789999999999999999999999
Q ss_pred ccC
Q 011452 483 WSN 485 (485)
Q Consensus 483 Wd~ 485 (485)
||.
T Consensus 318 ~D~ 320 (346)
T d1jmxb_ 318 FNP 320 (346)
T ss_dssp EET
T ss_pred EEC
Confidence 984
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=3.5e-29 Score=237.93 Aligned_cols=285 Identities=7% Similarity=-0.002 Sum_probs=202.1
Q ss_pred cccceEEEEEe--cCEEEEEeCCC--eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeE
Q 011452 94 KRSKIIEIVAA--RDIVFALAQSG--VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (485)
Q Consensus 94 ~~s~V~~i~~s--~~~ias~s~dg--tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t 169 (485)
|...|.+++|+ |+.|++++.+. ++++|+.++|+... +.. |...|.+++|+|||+.|++++. + ..
T Consensus 41 ~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~-~~~~v~~~~~spdg~~l~~~~~----~------~~ 108 (360)
T d1k32a3 41 EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK-FEE-NLGNVFAMGVDRNGKFAVVAND----R------FE 108 (360)
T ss_dssp CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE-CCC-CCCSEEEEEECTTSSEEEEEET----T------SE
T ss_pred CCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE-eeC-CCceEEeeeecccccccceecc----c------cc
Confidence 56778888888 88888776553 89999999777665 555 7778999999999999998763 3 48
Q ss_pred EEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEe----------eCCCcEEEeecCCCeEEEEEc-CCcEEE
Q 011452 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS----------AQDSIYKVFDLKNYTMLYSIS-DKNVQE 238 (485)
Q Consensus 170 ~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~----------s~D~tiKlWdl~~g~~l~tl~-~~~V~~ 238 (485)
+.+|++..+++. .++.. +...+..++|+ |||++||++ ..++++++||+++++...... ...+..
T Consensus 109 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~s-pdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~ 183 (360)
T d1k32a3 109 IMTVDLETGKPT---VIERS-REAMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYA 183 (360)
T ss_dssp EEEEETTTCCEE---EEEEC-SSSCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEE
T ss_pred ccccccccccee---eeeec-ccccccchhhc-cceeeeeeeccccccceeeccccceeeeccccCceeeeccccccccc
Confidence 999999888762 23332 33445679998 899999965 356789999999988765543 468999
Q ss_pred EEEcCCceEEEEEcCCCCeeEEEEecCCCeEE-------EEeecCCcceeEEEEEecCCCEEEEEeCC---Cc--EEEEE
Q 011452 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVL-------KSFNHLLHRNKKVDFIEQFNEKLLVKQEN---EN--LQILD 306 (485)
Q Consensus 239 VafSpg~~ll~sss~~~D~tIklWdi~tG~~L-------~tl~~~~~~~~~V~f~~~~~~~lls~s~D---~t--IkIWD 306 (485)
++|||++..+++.+. |.++++||....... ..+..|......+.|+ +++..+..+..+ .. +..++
T Consensus 184 ~~~spdg~~l~~~s~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~ 260 (360)
T d1k32a3 184 PAFDADSKNLYYLSY--RSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLV-PRSMTSEAGEYDLNDMYKRSSPIN 260 (360)
T ss_dssp EEECTTSCEEEEEES--CCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCC-CGGGSCCCCCCCCTTGGGGCEECS
T ss_pred ccccCCCCEEEEEeC--CCceEcccccccceeeccccceEEEecccCccccceEC-CCcCcccccceeecccccceeecc
Confidence 999997776666554 478999998765432 2333333333344443 334444443322 22 33444
Q ss_pred CCCCeeEEecccCCCceEEEEE---cCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEE
Q 011452 307 VRNFELTEVSRTEFMTPSAFIF---LYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIIS 382 (485)
Q Consensus 307 v~tg~~~~~l~gh~~~v~avaF---spdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS 382 (485)
+..++... +..+...+..+.+ ++++.++++++ |++|++||++++.+..+.+| |.+++|||||++|++
T Consensus 261 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--------v~~~~~SpDG~~l~~ 331 (360)
T d1k32a3 261 VDPGDYRM-IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN--------LTDLRLSADRKTVMV 331 (360)
T ss_dssp CCCBCEEE-EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEEEE--------EEEEEECTTSCEEEE
T ss_pred cCcCceeE-eeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEecCC--------cCEEEECCCCCEEEE
Confidence 55555433 2334444455554 44555788888 99999999974445555554 899999999999999
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++. ||+|++||+.+|+...++.-+.
T Consensus 332 ~~~-----------Dg~i~v~d~~~~~~~~~~~~d~ 356 (360)
T d1k32a3 332 RKD-----------DGKIYTFPLEKPEDERTVETDK 356 (360)
T ss_dssp EET-----------TSCEEEEESSCTTSCEECCCCS
T ss_pred EEC-----------CCeEEEEECCCCCcceEEEecc
Confidence 987 7999999999999998887653
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=5.5e-28 Score=247.69 Aligned_cols=295 Identities=7% Similarity=-0.007 Sum_probs=194.9
Q ss_pred ceEEEEEe--cCEEEEEeCCCeEEeeecccCcE--EEEee--cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEE
Q 011452 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQR--ICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s~dgtiklW~~~tG~~--l~tl~--g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~ 170 (485)
.|..|+|+ |++||+++.||++++||+.|++. +..+. .+|...+.+++|||||++|+.++. ++ .++
T Consensus 63 ~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~---~~------~~v 133 (432)
T d1qksa2 63 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY---WP------PQY 133 (432)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE---ET------TEE
T ss_pred CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC---CC------CeE
Confidence 35556666 99999999999999999998874 33333 236678899999999999854332 23 599
Q ss_pred EEeEeccCCcCcccceeee-------ccccCceEEEEeCCCCeE-EEEeeCCCcEEEeecCCCeEE--EEEc-CCcEEEE
Q 011452 171 RIEYIRRGKPDAGFALFES-------ESLKWPGFVEFDDVNGKV-LTYSAQDSIYKVFDLKNYTML--YSIS-DKNVQEI 239 (485)
Q Consensus 171 ~lw~i~~G~~~~~~~lf~~-------~~~~~~~~V~Fs~pnG~~-Las~s~D~tiKlWdl~~g~~l--~tl~-~~~V~~V 239 (485)
+|||..+|++....+.... .....+.+|.|+ |+|+. +++...+++|.+||..+++.+ .++. +..+..+
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~ 212 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS-HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG 212 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred EEEeCccccceeeeccCCccccceeccCCCceeEEEEC-CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence 9999999987432111110 012233468898 57766 466678899999999988754 4454 5689999
Q ss_pred EEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecC---CcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCe---
Q 011452 240 KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL---LHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFE--- 311 (485)
Q Consensus 240 afSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~---~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~--- 311 (485)
+|+|++.++..++. .+..+.+||..+++.+..+... .+......|..+..+...... .|++|.+|+.....
T Consensus 213 ~~spdg~~~~va~~-~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~ 291 (432)
T d1qksa2 213 GLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPD 291 (432)
T ss_dssp EECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred eECCCCCEEEEecc-ccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccccc
Confidence 99997765444443 3379999999999998877521 122223444334444444432 57788888765432
Q ss_pred ----eEEeccc-------------------------CCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCC
Q 011452 312 ----LTEVSRT-------------------------EFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHL 360 (485)
Q Consensus 312 ----~~~~l~g-------------------------h~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~ 360 (485)
....+.. |.....++++ ||++.|++++ |+++|+||+. +.. |.+|.
T Consensus 292 ~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~---l~~~~ 367 (432)
T d1qksa2 292 NAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAG---ITEGQ 367 (432)
T ss_dssp TBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHT---CCSSC
T ss_pred cccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCeeeEEEE-EechhhcccccCCceEecccccccc---cCCCC
Confidence 1111111 1111122333 6777777777 7777777762 432 23455
Q ss_pred CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 361 LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 361 ~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
.. |..++|||||++|+.++...++ .++.|+|||..|+|+++.+++.
T Consensus 368 ~~-----v~~~~fS~DG~~v~~S~~~~~~------~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 368 PR-----VVQGEFNKDGTEVWFSVWNGKD------QESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp CE-----EEEEEECTTSSEEEEEEECCTT------SCCEEEEEETTTTEEEEEECCT
T ss_pred Cc-----EEEeEECCCCCEEEEEEecCCC------CCCcEEEEECCCceEEeEecCC
Confidence 44 8899999999988666542222 3799999999999999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=1.6e-26 Score=216.75 Aligned_cols=261 Identities=10% Similarity=0.064 Sum_probs=194.7
Q ss_pred CEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCe
Q 011452 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYT 226 (485)
Q Consensus 149 ~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~ 226 (485)
++|++++. ++ ++.+||+.++++.. .+.. +....|..++|+ |||++| ++++.|++|.+||+++++
T Consensus 2 ~~~vt~~~---d~-------~v~v~D~~s~~~~~---~i~~~~~~~~~~~i~~s-pDg~~l~v~~~~~~~v~v~D~~t~~ 67 (337)
T d1pbyb_ 2 DYILAPAR---PD-------KLVVIDTEKMAVDK---VITIADAGPTPMVPMVA-PGGRIAYATVNKSESLVKIDLVTGE 67 (337)
T ss_dssp EEEEEEET---TT-------EEEEEETTTTEEEE---EEECTTCTTCCCCEEEC-TTSSEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEEEcC---CC-------EEEEEECCCCeEEE---EEECCCCCCCccEEEEC-CCCCEEEEEECCCCeEEEEECCCCc
Confidence 36788773 33 99999999988743 2221 223457789998 799986 677889999999999999
Q ss_pred EEEEEcC-------CcEEEEEEcCCceEEEEEcCC----------CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecC
Q 011452 227 MLYSISD-------KNVQEIKISPGIMLLIFTKAS----------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF 289 (485)
Q Consensus 227 ~l~tl~~-------~~V~~VafSpg~~ll~sss~~----------~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~ 289 (485)
++.++.. ..+..++|||++..+..+..+ .+..+.+||..++++++++..+ ..+..++|+ ++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~s-~d 145 (337)
T d1pbyb_ 68 TLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQITMLAWA-RD 145 (337)
T ss_dssp EEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SSCCCEEEC-TT
T ss_pred EEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CCceEEEEc-CC
Confidence 9988752 234579999866655444321 3468899999999999999854 456788986 78
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE------------------------EEEEe-CCcEE
Q 011452 290 NEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL------------------------FLTFR-NRTVA 344 (485)
Q Consensus 290 ~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l------------------------laS~s-D~TIk 344 (485)
+..+++++. .+.+||+.++++..++..+.. .....++|++.. +.... ++.+.
T Consensus 146 g~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (337)
T d1pbyb_ 146 GSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLL 222 (337)
T ss_dssp SSCEEEESS--SEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEE
T ss_pred CCEEEEEcC--CcceeeeecCcEEEEeecCCc-cccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEE
Confidence 888888764 478899999998887754432 222233343332 22223 55799
Q ss_pred EEeCC-CcEEE-EeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCC
Q 011452 345 VWNFR-GELVT-SFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPA 422 (485)
Q Consensus 345 lWd~~-G~ll~-tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~ 422 (485)
+|+.. |+... .+..|... +..++++|++.+++++ +++|++||+.+++++.++.. ..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------------~~~i~v~d~~~~~~~~~~~~-~~--- 280 (337)
T d1pbyb_ 223 TMDLETGEMAMREVRIMDVF-----YFSTAVNPAKTRAFGA-------------YNVLESFDLEKNASIKRVPL-PH--- 280 (337)
T ss_dssp EEETTTCCEEEEEEEECSSC-----EEEEEECTTSSEEEEE-------------ESEEEEEETTTTEEEEEEEC-SS---
T ss_pred EEEcCCCcEEEEEecCCCcc-----eEEEEecccceEEEEc-------------cccEEEEECCCCcEEEEEcC-CC---
Confidence 99995 77654 45556555 7889999999999875 48999999999999999853 31
Q ss_pred CcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEccC
Q 011452 423 ENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWSN 485 (485)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd~ 485 (485)
.+.+++|||||+.||+|+.|++|+|||.
T Consensus 281 -----------------------------------~~~~~~~s~dG~~l~v~~~~~~i~v~D~ 308 (337)
T d1pbyb_ 281 -----------------------------------SYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp -----------------------------------CCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred -----------------------------------CEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 6789999999999999999999999983
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=1.2e-22 Score=196.38 Aligned_cols=303 Identities=9% Similarity=-0.094 Sum_probs=206.5
Q ss_pred ccCCCCcccccccccccccceEEEEEecCEEEEE-----eCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEE
Q 011452 78 THDPKGHCSMVLPFLRKRSKIIEIVAARDIVFAL-----AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLI 152 (485)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~-----s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~La 152 (485)
.++.|....++.|+ +..++.. +..+.+.+||.++|+.+.++.. +.. ..++|||||++|+
T Consensus 18 ~~~~p~~~~a~spd-------------g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~-~~~--~~~a~SpDG~~l~ 81 (373)
T d2madh_ 18 AADGPTNDEAPGAD-------------GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFL--PNPVAAHSGSEFA 81 (373)
T ss_pred cCCCCccccccCCC-------------CCEEEEEcccccCCCceEEEEECCCCCEEEEEeC-CCC--ccEEEcCCCCEEE
Confidence 35566666666776 7777654 3446789999999999999876 332 4799999999999
Q ss_pred EEEeecCCCCcccceeEEEEeEeccCCcCcccceeee---ccccCceEEEEeCCCCeEEEEe--eCCCcEEEeecCCCeE
Q 011452 153 TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTM 227 (485)
Q Consensus 153 s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~--s~D~tiKlWdl~~g~~ 227 (485)
+++.+.........-.++.+||..++++.....+-.. .....+..+.|+ +||+.+... ..++.+.+|+..+.+.
T Consensus 82 va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~ 160 (373)
T d2madh_ 82 LASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANT-PNNADLLFFQFAAGPAVGLVVQGGSSD 160 (373)
T ss_pred EEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEE-eCCCcEEEEEEcCCCceEEeeccCCeE
Confidence 9876443222233346899999999987321111110 012234568898 788876554 4578999999988776
Q ss_pred EEEEcCCcEEEEEEcCCce-EEEEEcCCCCeeEEEEecCCCeEEEEeecCCcc----eeEEEEEecCCCEEEEEeCCCcE
Q 011452 228 LYSISDKNVQEIKISPGIM-LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR----NKKVDFIEQFNEKLLVKQENENL 302 (485)
Q Consensus 228 l~tl~~~~V~~VafSpg~~-ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~----~~~V~f~~~~~~~lls~s~D~tI 302 (485)
+.... .+..++|+|++. ++++.+ .|+++.+|+..++++..+...+... ..........+..++..+.|+++
T Consensus 161 ~~~~~--~~~~~~~s~~g~~~~v~~~--~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 236 (373)
T d2madh_ 161 DQLLS--SPTCYHIHPGAPSTFYLLC--AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI 236 (373)
T ss_pred EEEec--cceeEEEecCCCcEEEEEc--CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceE
Confidence 55543 466889998554 334433 4589999999999998877643222 11222222234566777899999
Q ss_pred EEEECCCCeeEEe--cccCCC----------ceEEEEEcCCCcEE----------EEEe-CCcEEEEeCC-CcEEEEeec
Q 011452 303 QILDVRNFELTEV--SRTEFM----------TPSAFIFLYENQLF----------LTFR-NRTVAVWNFR-GELVTSFED 358 (485)
Q Consensus 303 kIWDv~tg~~~~~--l~gh~~----------~v~avaFspdg~ll----------aS~s-D~TIklWd~~-G~ll~tl~g 358 (485)
.+|+..+++.... ...+.. ....++++|++..+ ++.. +++|.+||.. |+.+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~ 316 (373)
T d2madh_ 237 LQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL 316 (373)
T ss_pred EEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC
Confidence 9999998764322 222221 22334555555544 4455 7799999995 999998863
Q ss_pred CCCCCCCCCeeEEEECCCCCE--EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 359 HLLWHPDCNTNNIYITSDQDL--IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 359 H~~~~~~~~v~svafSpDG~~--LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
... +..++|||||+. +++++. |++|+|||+.||+.++++.+|.
T Consensus 317 -~~~-----~~~~a~spDG~~~l~vt~~~-----------d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 317 -GHD-----VDAISVAQDGGPDLYALSAG-----------TEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred -CCC-----eeEEEECCCCCEEEEEEeCC-----------CCeEEEEECCCCCEEEEECCCC
Confidence 333 789999999995 356654 7999999999999999999875
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.93 E-value=3.9e-23 Score=199.72 Aligned_cols=294 Identities=8% Similarity=-0.027 Sum_probs=205.4
Q ss_pred CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-
Q 011452 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA- 212 (485)
Q Consensus 134 ~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s- 212 (485)
.++..+.+++++|||+.++..+.. ..+ ....+.+||..+|++.. .+. ......++|+ |||++|+.++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~-~~~----~~~~v~v~D~~tg~~~~---~~~---~~~~~~~a~S-pDG~~l~va~~ 85 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPA-HHS----AIIQQWVLDAGSGSILG---HVN---GGFLPNPVAA-HSGSEFALAST 85 (373)
T ss_pred cCCCCccccccCCCCCEEEEEccc-ccC----CCceEEEEECCCCCEEE---EEe---CCCCccEEEc-CCCCEEEEEee
Confidence 367789999999999998765321 111 01367888988998732 122 2333379998 7999998875
Q ss_pred ---------CCCcEEEeecCCCeEEEEEcC--Cc-------EEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 213 ---------QDSIYKVFDLKNYTMLYSISD--KN-------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 213 ---------~D~tiKlWdl~~g~~l~tl~~--~~-------V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.|++|+|||+.+++++..+.. .. ...++|+|+++.+.....+.+..+.+|+..+++.+....
T Consensus 86 ~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 165 (373)
T d2madh_ 86 SFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS 165 (373)
T ss_pred cCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec
Confidence 468899999999999887742 21 245889976654443344556789999999988876665
Q ss_pred cCCcceeEEEEEecCCCEE-EEEeCCCcEEEEECCCCeeEEeccc------CCCceEEEEEcCCCcEEEEEeCCcEEEEe
Q 011452 275 HLLHRNKKVDFIEQFNEKL-LVKQENENLQILDVRNFELTEVSRT------EFMTPSAFIFLYENQLFLTFRNRTVAVWN 347 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~l-ls~s~D~tIkIWDv~tg~~~~~l~g------h~~~v~avaFspdg~llaS~sD~TIklWd 347 (485)
....+.|+ +++..+ ++.+.|+++.+||..++++..+... +......+.+++++.+++.+.++++.+|+
T Consensus 166 ----~~~~~~~s-~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 166 ----SPTCYHIH-PGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQAD 240 (373)
T ss_pred ----cceeEEEe-cCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEE
Confidence 34567776 556555 4568999999999999988776543 23344556778888776655599999999
Q ss_pred CC-CcE--EEEeecCCCC------CCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 348 FR-GEL--VTSFEDHLLW------HPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 348 ~~-G~l--l~tl~gH~~~------~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
.. ++. +.++..+... .+.. ...++++|||..++..... .........+++|.+||+.+|+.+..+....
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~ 318 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPGG-WQQVAYLKSSDGIYLLTSE-QSAWKLHAAAKEVTSVTGLVGQTSSQISLGH 318 (373)
T ss_pred cCCCeEEEEEeeccccCcEEeeeeccCc-ceeeEEecCCCeEEEecCC-CceEEeecCCCeEEEEECCCCcEEEEecCCC
Confidence 86 442 3333333221 1121 3567888888877655431 1111223346899999999999999886432
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCE--EEEecCCCcEEEccC
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE--IYTGNRHGLVHVWSN 485 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~--LaSgs~DgtVklWd~ 485 (485)
.+.+|+|||||+. +++++.|++|+|||.
T Consensus 319 ---------------------------------------~~~~~a~spDG~~~l~vt~~~d~~v~v~D~ 348 (373)
T d2madh_ 319 ---------------------------------------DVDAISVAQDGGPDLYALSAGTEVLHIYDA 348 (373)
T ss_pred ---------------------------------------CeeEEEECCCCCEEEEEEeCCCCeEEEEEC
Confidence 7889999999994 479999999999984
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=2.8e-22 Score=191.42 Aligned_cols=286 Identities=13% Similarity=0.033 Sum_probs=196.1
Q ss_pred cCEEEEE-----eCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCC
Q 011452 105 RDIVFAL-----AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (485)
Q Consensus 105 ~~~ias~-----s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~ 179 (485)
+..++.. +.+.++.+||..+|+.+.++..+. +..++|||||++|+.++.....-...-.-..+.+||..+|+
T Consensus 13 g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~---~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~ 89 (355)
T d2bbkh_ 13 ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL 89 (355)
T ss_dssp TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred CCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC---CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCC
Confidence 7777654 456789999999999999998633 33799999999998876532111011112589999999998
Q ss_pred cCcccceeee---ccccCceEEEEeCCCCeEEEEe--eCCCcEEEeecCCCeEEEEEcCC---------cEEEEEEcCCc
Q 011452 180 PDAGFALFES---ESLKWPGFVEFDDVNGKVLTYS--AQDSIYKVFDLKNYTMLYSISDK---------NVQEIKISPGI 245 (485)
Q Consensus 180 ~~~~~~lf~~---~~~~~~~~V~Fs~pnG~~Las~--s~D~tiKlWdl~~g~~l~tl~~~---------~V~~VafSpg~ 245 (485)
+.....+... .....+..++|+ ++|+.+..+ +.+..+.+||+.+++.+.++... ....++|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~s-~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg 168 (355)
T d2bbkh_ 90 PTADIELPDAPRFLVGTYPWMTSLT-PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDG 168 (355)
T ss_dssp EEEEEEETTCCCCCBSCCGGGEEEC-TTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTS
T ss_pred EEEEEecCCcceeecCCCCceEEEe-cCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCC
Confidence 7432211111 112335578998 799876655 46789999999999988877532 23347777655
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe--cccCC---
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV--SRTEF--- 320 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~--l~gh~--- 320 (485)
..+..... .+.++.+++.++.+. .+...+..+.+. +++..++..+.++++.+||+.+++.... ..+|.
T Consensus 169 ~~~~v~~~-~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 241 (355)
T d2bbkh_ 169 SLAKVAFG-TEGTPEITHTEVFHP-----EDEFLINHPAYS-QKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAE 241 (355)
T ss_dssp CEEEEECC-SSSCCEEEECCCCSC-----TTSCBCSCCEEE-TTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHH
T ss_pred CEEEEEec-CCCeEEEEecccccc-----eecceeeecccc-CCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccce
Confidence 54443322 235566666554432 222334456665 5577888889999999999998865322 22221
Q ss_pred -------CceEEEEEcCCCcEEEEEe-C----------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC--E
Q 011452 321 -------MTPSAFIFLYENQLFLTFR-N----------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD--L 379 (485)
Q Consensus 321 -------~~v~avaFspdg~llaS~s-D----------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~--~ 379 (485)
.....++++||+..+...+ + .+|.+||.. ++.+.+++.+. . +..++|||||+ +
T Consensus 242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~-~-----~~~~a~spDG~~~l 315 (355)
T d2bbkh_ 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-E-----IDSINVSQDEKPLL 315 (355)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-E-----ECEEEECCSSSCEE
T ss_pred EeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCC-C-----EEEEEEcCCCCeEE
Confidence 2234588999999887665 3 379999996 99999887542 2 78999999998 3
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
+++++. |++|.+||++||+++++|.++.
T Consensus 316 ~v~~~~-----------d~~i~v~D~~tg~~~~~i~~~G 343 (355)
T d2bbkh_ 316 YALSTG-----------DKTLYIHDAESGEELRSVNQLG 343 (355)
T ss_dssp EEEETT-----------TTEEEEEETTTCCEEEEECCCC
T ss_pred EEEECC-----------CCEEEEEECCCCCEEEEEeCcC
Confidence 455544 7999999999999999998764
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=6.4e-22 Score=186.29 Aligned_cols=279 Identities=9% Similarity=0.038 Sum_probs=184.8
Q ss_pred EEEEEeCCCeEEeeecccCcEEEEee-cCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccc
Q 011452 107 IVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (485)
Q Consensus 107 ~ias~s~dgtiklW~~~tG~~l~tl~-g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~ 185 (485)
+++++++|++|++|++.+...+..++ ..+...+.+|+|||||++|++++ .++ +++.+|++..++... .
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~---~~d------~~i~~~~i~~~~~~~--~ 74 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGV---RPE------FRVLAYRIAPDDGAL--T 74 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEE---TTT------TEEEEEEECTTTCCE--E
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEE---CCC------CeEEEEEEeCCCCcE--E
Confidence 34788899999999987654333222 12556799999999999997644 234 589999986654311 1
Q ss_pred eeee-ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEEEEE----cCCcEEEEEEcCCceEEEEEcCCCCeeE
Q 011452 186 LFES-ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSI----SDKNVQEIKISPGIMLLIFTKASGHVPL 259 (485)
Q Consensus 186 lf~~-~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l~tl----~~~~V~~VafSpg~~ll~sss~~~D~tI 259 (485)
+... .....|..++|+ |||++|+.++ .+++|++|+.......... +...+.+++|||++..+..... .+..|
T Consensus 75 ~~~~~~~~~~p~~l~~s-pDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~-~~~~i 152 (333)
T d1ri6a_ 75 FAAESALPGSLTHISTD-HQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL-KQDRI 152 (333)
T ss_dssp EEEEEECSSCCSEEEEC-TTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-GGTEE
T ss_pred EeeecccCCCceEEEEc-CCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc-cccee
Confidence 1222 223346689998 8999988887 4789999998877644333 2357889999987766555443 34689
Q ss_pred EEEecCCCeEEEEee------cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCe----eEEec------ccCCCc
Q 011452 260 KILSIEDGTVLKSFN------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFE----LTEVS------RTEFMT 322 (485)
Q Consensus 260 klWdi~tG~~L~tl~------~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~----~~~~l------~gh~~~ 322 (485)
.+|+..+........ ........++|. +++..+... ...+...+|++.... ..... ......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (333)
T d1ri6a_ 153 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH-PNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRW 231 (333)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCC
T ss_pred eEEEeccCCcceeeeceeeeeecCCCccEEEEe-ccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCcccc
Confidence 999987754433221 122344678886 556666555 477888888865432 11121 123456
Q ss_pred eEEEEEcCCCcEEEEEe--CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCe
Q 011452 323 PSAFIFLYENQLFLTFR--NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGS 399 (485)
Q Consensus 323 v~avaFspdg~llaS~s--D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~Dgt 399 (485)
+..++++||++++.... ++++.+|++. ...+..+.++... .....+++|||||++|+.++. .+++
T Consensus 232 ~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~a~spDGk~l~va~~----------~~~~ 299 (333)
T d1ri6a_ 232 AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT--ETQPRGFNVDHSGKYLIAAGQ----------KSHH 299 (333)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC--SSSCCCEEECTTSSEEEEECT----------TTCE
T ss_pred ceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCC--CCCeeEEEEeCCCCEEEEEEC----------CCCe
Confidence 78889999999776665 8899999985 3322333332211 011678999999999887764 2699
Q ss_pred EEEE--eCCCCeEE
Q 011452 400 INIS--NILTGKCL 411 (485)
Q Consensus 400 IklW--dl~TGk~l 411 (485)
|+|| |.+||++.
T Consensus 300 v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 300 ISVYEIVGEQGLLH 313 (333)
T ss_dssp EEEEEEETTTTEEE
T ss_pred EEEEEEECCCCcEE
Confidence 9999 55788764
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.90 E-value=4.7e-23 Score=196.85 Aligned_cols=288 Identities=9% Similarity=0.026 Sum_probs=193.3
Q ss_pred cEEEEEEeeCCCEEEEEEee-cCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEe-----
Q 011452 138 VIRSLFYNKNNDSLITVSVY-ASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYS----- 211 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d-~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~----- 211 (485)
++.-.+.+|||+.+..+... +... .++.+||..+|++.. .+ ..+....++|| |||++|+..
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~------~~v~v~D~~tg~~~~---~~---~~g~~~~~a~S-pDg~~l~v~~~~~~ 69 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAV------TQQFVIDGEAGRVIG---MI---DGGFLPNPVVA-DDGSFIAHASTVFS 69 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSS------EEEEEEETTTTEEEE---EE---EECSSCEEEEC-TTSSCEEEEEEEEE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCc------CeEEEEECCCCcEEE---EE---ECCCCCceEEc-CCCCEEEEEeCCCc
Confidence 34445779999998654321 1122 578999998988622 12 22344479998 899988754
Q ss_pred -----eCCCcEEEeecCCCeEEEEEcC---------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCC
Q 011452 212 -----AQDSIYKVFDLKNYTMLYSISD---------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (485)
Q Consensus 212 -----s~D~tiKlWdl~~g~~l~tl~~---------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~ 277 (485)
+.|++|++||+.+++.+.++.. .....++|||++..+...+...+..+.+|+.++|+.+.++..+.
T Consensus 70 ~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 70 RIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred cccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCC
Confidence 3488999999999998887631 23356899986665555555566899999999999999887432
Q ss_pred cc-------eeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 278 HR-------NKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 278 ~~-------~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
.. ...+.|+ +++..+++. ..++++.+++..+.+. .+...+...++++++..++.++ ++++.+|++
T Consensus 150 ~~~~~~~~~~~~~~~~-~dg~~~~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 223 (355)
T d2bbkh_ 150 CYHIFPTAPDTFFMHC-RDGSLAKVAFGTEGTPEITHTEVFHP-----EDEFLINHPAYSQKAGRLVWPTYTGKIHQIDL 223 (355)
T ss_dssp EEEEEEEETTEEEEEE-TTSCEEEEECCSSSCCEEEECCCCSC-----TTSCBCSCCEEETTTTEEEEEBTTSEEEEEEC
T ss_pred cceEeecCCcceEEEc-CCCCEEEEEecCCCeEEEEecccccc-----eecceeeeccccCCCCeEEEecCCCeEEEEec
Confidence 11 1133443 344444443 3445555555444332 3444556677888888888888 999999999
Q ss_pred C-CcE--EEEeecCCC------CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 349 R-GEL--VTSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 349 ~-G~l--l~tl~gH~~------~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
. ++. +.+.++|.. +.+.. ...++++|||..++..+.+... ......+++|.+||+.+++.++++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~v~v~d~~t~~~~~~~~~~~- 300 (355)
T d2bbkh_ 224 SSGDAKFLPAVEALTEAERADGWRPGG-WQQVAYHRALDRIYLLVDQRDE-WRHKTASRFVVVLDAKTGERLAKFEMGH- 300 (355)
T ss_dssp TTSSCEECCCEESSCHHHHHTTEEECS-SSCEEEETTTTEEEEEEEECCT-TCTTSCEEEEEEEETTTCCEEEEEEEEE-
T ss_pred CCCcEEEEeccCCcccceEeeeeeccc-eEEEEEeCCCCeEEEEeccCCc-eeecCCCCeEEEEeCCCCcEEEEecCCC-
Confidence 6 543 333444432 11222 3569999999998877652111 1111224689999999999999987543
Q ss_pred CCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCC--EEEEecCCCcEEEccC
Q 011452 420 LPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRN--EIYTGNRHGLVHVWSN 485 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~--~LaSgs~DgtVklWd~ 485 (485)
.+++++|||||+ .+++++.|++|+|||.
T Consensus 301 --------------------------------------~~~~~a~spDG~~~l~v~~~~d~~i~v~D~ 330 (355)
T d2bbkh_ 301 --------------------------------------EIDSINVSQDEKPLLYALSTGDKTLYIHDA 330 (355)
T ss_dssp --------------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEET
T ss_pred --------------------------------------CEEEEEEcCCCCeEEEEEECCCCEEEEEEC
Confidence 678999999998 4678889999999984
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=3.2e-22 Score=187.92 Aligned_cols=280 Identities=8% Similarity=-0.053 Sum_probs=196.4
Q ss_pred ceEEEEEe--cCEE-EEEeCCCeEEeeecccCcEEEEeecCCc-----ccEEEEEEeeCCCEEEEEEeecCCC--Ccccc
Q 011452 97 KIIEIVAA--RDIV-FALAQSGVCAAFCRETNQRICFLNVTAD-----EVIRSLFYNKNNDSLITVSVYASDN--FSSLR 166 (485)
Q Consensus 97 ~V~~i~~s--~~~i-as~s~dgtiklW~~~tG~~l~tl~g~~~-----~~i~sv~~spdg~~Las~S~d~~~d--~stL~ 166 (485)
.+..|+|+ |+++ ++++.+++|++||+++++.+.++..... ..+.+++|+|||+.|+.++.+.... .....
T Consensus 41 ~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~ 120 (346)
T d1jmxb_ 41 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120 (346)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred CcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence 34567776 7776 6677899999999999999987765322 1356899999999998776432110 11111
Q ss_pred eeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc-CCcEEEEEEcCCc
Q 011452 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGI 245 (485)
Q Consensus 167 ~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~ 245 (485)
-..+.+|+..+|+.......... -..+..+.++ +++++++++ ..+.+||+.+++.+.++. +..+..++++|++
T Consensus 121 ~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (346)
T d1jmxb_ 121 PPRLEVFSTADGLEAKPVRTFPM--PRQVYLMRAA-DDGSLYVAG---PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDV 194 (346)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEEC--CSSCCCEEEC-TTSCEEEES---SSEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred cceEEEEecccceeeeEEEeeec--cCceEEEEec-CCCEEEEeC---CcceEEEccCCCEEEEEecCCCccceEEeccc
Confidence 24677888877776432222221 1233456675 788887764 468999999999999886 4567888899855
Q ss_pred eEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEe-cccCCCceE
Q 011452 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEV-SRTEFMTPS 324 (485)
Q Consensus 246 ~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~-l~gh~~~v~ 324 (485)
..+.... ..+.++.+++... .+ ......+.+...+..+.+||+.+++.... ...|...+.
T Consensus 195 ~~~~~~~-~~~~~~~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (346)
T d1jmxb_ 195 LYFWPHQ-SPRHEFSMLYTIA-----------------RF-KDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255 (346)
T ss_dssp CCCCCCC-CTTCEEEEEEEEE-----------------EC--------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEE
T ss_pred cEEEEEe-cCCCceEeeeeee-----------------ee-ccCceeEeeccCCceEEEEECCCCceEEEEeecccceeE
Confidence 4432211 2234555554210 01 12223344456788999999999876544 567888999
Q ss_pred EEEEcCCCcEEEEEeCCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEE
Q 011452 325 AFIFLYENQLFLTFRNRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINIS 403 (485)
Q Consensus 325 avaFspdg~llaS~sD~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklW 403 (485)
+++++|++..+++..+++|++||.. ++++..++- ... +.+++|||||++|++++. |++|++|
T Consensus 256 ~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~-----~~~va~s~DG~~l~v~~~-----------d~~v~v~ 318 (346)
T d1jmxb_ 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHT-----YYCVAFDKKGDKLYLGGT-----------FNDLAVF 318 (346)
T ss_dssp EEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC-SSC-----CCEEEECSSSSCEEEESB-----------SSEEEEE
T ss_pred EEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC-CCC-----EEEEEEcCCCCEEEEEeC-----------CCcEEEE
Confidence 9999999999988887789999995 999988863 222 789999999999999986 7999999
Q ss_pred eCCCCeEEEEecCCC
Q 011452 404 NILTGKCLAKIRASN 418 (485)
Q Consensus 404 dl~TGk~l~tl~gH~ 418 (485)
|+.|+|++.+++-+.
T Consensus 319 D~~t~~~i~~i~~p~ 333 (346)
T d1jmxb_ 319 NPDTLEKVKNIKLPG 333 (346)
T ss_dssp ETTTTEEEEEEECSS
T ss_pred ECccCCEEEEEECCC
Confidence 999999999998654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=7.9e-21 Score=178.71 Aligned_cols=266 Identities=11% Similarity=0.104 Sum_probs=181.5
Q ss_pred eEEEEeEeccCCcCcccceeee-ccccCceEEEEeCCCCeEE-EEeeCCCcEEEeecCCCeEEEE----E-cCCcEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVL-TYSAQDSIYKVFDLKNYTMLYS----I-SDKNVQEIK 240 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~-~~~~~~~~V~Fs~pnG~~L-as~s~D~tiKlWdl~~g~~l~t----l-~~~~V~~Va 240 (485)
++|++|++..... ..+.+. ++-..+..++|+ |||++| +++..|++|++|++.......+ . ....+..++
T Consensus 14 ~~I~v~~~~~~~~---l~~~~~~~~~~~v~~la~s-pDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~ 89 (333)
T d1ri6a_ 14 QQIHVWNLNHEGA---LTLTQVVDVPGQVQPMVVS-PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHIS 89 (333)
T ss_dssp TEEEEEEECTTSC---EEEEEEEECSSCCCCEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEE
T ss_pred CcEEEEEEcCCCC---eEEEEEEcCCCCEeEEEEe-CCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEE
Confidence 6999999854322 122321 334667899998 899988 5666799999999976542222 2 235678899
Q ss_pred EcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCCeeEE---
Q 011452 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNFELTE--- 314 (485)
Q Consensus 241 fSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg~~~~--- 314 (485)
|||++..+..+.. .+.+|++|+.+.+....... .+......+.|+ +++.++++++ .+..|.+|+..+.....
T Consensus 90 ~spDg~~l~v~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s-~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (333)
T d1ri6a_ 90 TDHQGQFVFVGSY-NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS-PDNRTLWVPALKQDRICLFTVSDDGHLVAQD 167 (333)
T ss_dssp ECTTSSEEEEEET-TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC-TTSSEEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred EcCCCCEEeeccc-CCCceeeeccccccceecccccCCCccceEEEee-ecceeeeccccccceeeEEEeccCCcceeee
Confidence 9997765555432 34799999988877655443 444556788886 7788888775 77889999988653221
Q ss_pred ---ecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--Cc---EEEEeecCCC-CCCCCCeeEEEECCCCCEEEEE
Q 011452 315 ---VSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE---LVTSFEDHLL-WHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 315 ---~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~---ll~tl~gH~~-~~~~~~v~svafSpDG~~LaS~ 383 (485)
....+...+..++|++++..+.... .+...+|+.. .. ...++..... .........++++|||+++...
T Consensus 168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~ 247 (333)
T d1ri6a_ 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 247 (333)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeee
Confidence 1233556788999999999987765 7788888874 22 2222221110 0111226789999999988877
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
.. .++++.+|++....++.++.++... . ..+++|+
T Consensus 248 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~----------~~p~~~a 282 (333)
T d1ri6a_ 248 DR----------TASLITVFSVSEDGSVLSKEGFQPT-------------------------E----------TQPRGFN 282 (333)
T ss_dssp ET----------TTTEEEEEEECTTSCCEEEEEEEEC-------------------------S----------SSCCCEE
T ss_pred cc----------cCCeEEEEEEcCCCCEEEEEEEeCC-------------------------C----------CCeeEEE
Confidence 65 2689999999877666666554310 0 2567899
Q ss_pred EcCCCCEEEEe-cCCCcEEEcc
Q 011452 464 YDEDRNEIYTG-NRHGLVHVWS 484 (485)
Q Consensus 464 fspDg~~LaSg-s~DgtVklWd 484 (485)
|||||+.|+.+ +.+++|+||+
T Consensus 283 ~spDGk~l~va~~~~~~v~v~~ 304 (333)
T d1ri6a_ 283 VDHSGKYLIAAGQKSHHISVYE 304 (333)
T ss_dssp ECTTSSEEEEECTTTCEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEE
Confidence 99999987665 4679999995
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=1.1e-18 Score=170.86 Aligned_cols=289 Identities=10% Similarity=0.053 Sum_probs=187.8
Q ss_pred CcccEEEEEEeeCCCEEE-EEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEee-
Q 011452 135 ADEVIRSLFYNKNNDSLI-TVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA- 212 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~La-s~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s- 212 (485)
++.....++..++|+... +...+.... ..+.++|...|++.. .... .....++|+ |||++|+.++
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~------~~~~~~d~~~~~~~~---~~~~---~~~~~~a~s-pDg~~i~~~~~ 84 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGT------TENWVSCAGCGVTLG---HSLG---AFLSLAVAG-HSGSDFALAST 84 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSS------EEEEEEETTTTEEEE---EEEE---CTTCEEEEC-TTSSCEEEEEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCc------ceEEEEeCCCCcEEE---EEeC---CCCCcceEC-CCCCEEEEEcc
Confidence 344556677889998743 322222222 356666877776622 2222 223368998 7999988754
Q ss_pred ---------CCCcEEEeecCCCeEEEEEc--C-------CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee
Q 011452 213 ---------QDSIYKVFDLKNYTMLYSIS--D-------KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (485)
Q Consensus 213 ---------~D~tiKlWdl~~g~~l~tl~--~-------~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~ 274 (485)
.|++|++||+.+++++..+. . .....++|||+++.+..+.. .+++|.+||+++++++..+.
T Consensus 85 ~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-~~~~v~~~d~~~~~~~~~~~ 163 (368)
T d1mdah_ 85 SFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-GSSAAAGLSVPGASDDQLTK 163 (368)
T ss_dssp EETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-SSSCEEEEEETTTEEEEEEE
T ss_pred cCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-CCCeEEEEECCCCcEeEEee
Confidence 48899999999999988773 1 22346999986655544332 34799999999999999987
Q ss_pred cCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEE------ecccCCCceEEEEEcCCCcEEEEEeCCcEEEEeC
Q 011452 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTE------VSRTEFMTPSAFIFLYENQLFLTFRNRTVAVWNF 348 (485)
Q Consensus 275 ~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~------~l~gh~~~v~avaFspdg~llaS~sD~TIklWd~ 348 (485)
.+... .+ .+......++.+.|+++..|++..+.... ....+...+..+.+.+++..+.+. ++.+.++++
T Consensus 164 ~~~~~--~~--~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~v~~~~~ 238 (368)
T d1mdah_ 164 SASCF--HI--HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-ASSILQGDI 238 (368)
T ss_dssp CSSCC--CC--EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-SSCCEEEEC
T ss_pred ccCcc--eE--ccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEec-CCCEEEEee
Confidence 53222 11 11223455556789999999887654332 233455666778899999877654 455667777
Q ss_pred C-CcEE--EEeecCCC------CCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCC
Q 011452 349 R-GELV--TSFEDHLL------WHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNG 419 (485)
Q Consensus 349 ~-G~ll--~tl~gH~~------~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~ 419 (485)
. ++.. ....++.. +.+.. ...++++|++..+....... +........+|.+||..||+++.++....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~v~~~~~--~~~~~~~~~~v~v~D~~t~~~~~~~~~~~- 314 (368)
T d1mdah_ 239 PAAGATMKAAIDGNESGRKADNFRSAG-FQMVAKLKNTDGIMILTVEH--SRSCLAAAENTSSVTASVGQTSGPISNGH- 314 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECS-SSCEEEETTTTEEEEEEEEC--SSCTTSCEEEEEEEESSSCCEEECCEEEE-
T ss_pred cCCceEEEeecccccceeeeeeecCCC-ceeEEEcCCCCEEEEEecCC--CceeecCCceEEEEECCCCcEeEEecCCC-
Confidence 5 3322 22222221 21222 24689999999887655421 11111223579999999999999886532
Q ss_pred CCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCE--EEEecCCCcEEEcc
Q 011452 420 LPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNE--IYTGNRHGLVHVWS 484 (485)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~--LaSgs~DgtVklWd 484 (485)
.+.+++|||||+. +++++.|++|+|||
T Consensus 315 --------------------------------------~~~~~a~spDG~~~ly~s~~~~~~v~v~D 343 (368)
T d1mdah_ 315 --------------------------------------DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp --------------------------------------EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred --------------------------------------ceeEEEECCCCCEEEEEEeCCCCeEEEEE
Confidence 6789999999973 56888999999998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.78 E-value=7.8e-18 Score=170.01 Aligned_cols=138 Identities=13% Similarity=0.083 Sum_probs=98.2
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecC----CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~----~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~ 180 (485)
++++. ..|+.+.+||..+|+....+... +...|.++.|||||+.|+.++.+. .-+.+-.-..+.||++.+|++
T Consensus 28 ~~~~~--~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~-~~~r~s~~~~~~l~d~~~~~~ 104 (470)
T d2bgra1 28 HEYLY--KQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV-KQWRHSYTASYDIYDLNKRQL 104 (470)
T ss_dssp SEEEE--ESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE-ECSSSCEEEEEEEEETTTTEE
T ss_pred CEEEE--EcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc-ceeeeccCceEEEEECCCCcc
Confidence 56655 45889999999999987655432 345799999999999999987532 123344446888999988876
Q ss_pred CcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--------------------CcEEEEE
Q 011452 181 DAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------------------KNVQEIK 240 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--------------------~~V~~Va 240 (485)
. ++-. +-..+..++|| |||+.||+.. |+.+.+|++.+++....... .....+.
T Consensus 105 ~---~l~~--~~~~~~~~~~S-PDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~ 177 (470)
T d2bgra1 105 I---TEER--IPNNTQWVTWS-PVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW 177 (470)
T ss_dssp C---CSSC--CCTTEEEEEEC-SSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred c---cccc--CCccccccccc-cCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence 2 2222 23445689998 8999999965 78999999999886543321 1234578
Q ss_pred EcCCceEEEEEc
Q 011452 241 ISPGIMLLIFTK 252 (485)
Q Consensus 241 fSpg~~ll~sss 252 (485)
|||++..+++.+
T Consensus 178 wSPDGk~ia~~~ 189 (470)
T d2bgra1 178 WSPNGTFLAYAQ 189 (470)
T ss_dssp ECTTSSEEEEEE
T ss_pred ECCCCCccceeE
Confidence 999777766654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.78 E-value=1.8e-18 Score=169.35 Aligned_cols=274 Identities=7% Similarity=-0.062 Sum_probs=169.6
Q ss_pred EEEeCCCeEEe--eecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccce
Q 011452 109 FALAQSGVCAA--FCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (485)
Q Consensus 109 as~s~dgtikl--W~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~l 186 (485)
+..+.+|+.++ ||..+|+.+.++.++.. ..++|+|||+.|+.++...+.-.+.-...++.+||..++++....++
T Consensus 38 ~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~ 114 (368)
T d1mdah_ 38 LPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIEL 114 (368)
T ss_dssp ECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEE
T ss_pred eeccCCCcceEEEEeCCCCcEEEEEeCCCC---CcceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecC
Confidence 34566777554 59999999999887443 35899999999999876543222222336899999998887432211
Q ss_pred eee---ccccCceEEEEeCCCCeEEEEee-CCCcEEEeecCCCeEEEEEcCC---------cEEEEEEcCCceEEEEEcC
Q 011452 187 FES---ESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDK---------NVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 187 f~~---~~~~~~~~V~Fs~pnG~~Las~s-~D~tiKlWdl~~g~~l~tl~~~---------~V~~VafSpg~~ll~sss~ 253 (485)
=.. .....+..++|+ |||++|+.+. .++++.+||+.+++.+..+... ...-++++++
T Consensus 115 p~~~~~~~g~~p~~~a~S-pDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~D--------- 184 (368)
T d1mdah_ 115 PDAPRFSVGPRVHIIGNC-ASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCP--------- 184 (368)
T ss_dssp TTSCSCCBSCCTTSEEEC-TTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCT---------
T ss_pred CccceecccCCccceEEC-CCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCC---------
Confidence 000 122345679998 7999987765 5799999999999988877521 1122444443
Q ss_pred CCCeeEEEEecCCCeEEEE------eecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccC------
Q 011452 254 SGHVPLKILSIEDGTVLKS------FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTE------ 319 (485)
Q Consensus 254 ~~D~tIklWdi~tG~~L~t------l~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh------ 319 (485)
+++.+|++.++..... +..+......+.+. + .+.+ ....++.+.++|+..++..... ..+
T Consensus 185 ---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (368)
T d1mdah_ 185 ---ASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQAN-Y-PGML-VWAVASSILQGDIPAAGATMKAAIDGNESGRKA 258 (368)
T ss_dssp ---TSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEET-T-TTEE-EECBSSCCEEEECCSSCCEEECCCCSSCTHHHH
T ss_pred ---CCEEEEEecCCceeeeeeecccccccccceeecccc-c-CcEE-EEecCCCEEEEeecCCceEEEeecccccceeee
Confidence 3444444433322211 11222222234332 2 1222 2223444555555544332211 111
Q ss_pred ----CCceEEEEEcCCCcEEEEEe--C--------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCE--EEE
Q 011452 320 ----FMTPSAFIFLYENQLFLTFR--N--------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDL--IIS 382 (485)
Q Consensus 320 ----~~~v~avaFspdg~llaS~s--D--------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~--LaS 382 (485)
......++++|++..+.... + .+|.+||.. |+++.++..+. . +.+++|||||+. +++
T Consensus 259 ~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~-~-----~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 259 DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-D-----SDAIIAAQDGASDNYAN 332 (368)
T ss_dssp TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-E-----ECEEEECCSSSCEEEEE
T ss_pred eeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCC-c-----eeEEEECCCCCEEEEEE
Confidence 11123477899988776543 2 359999996 99999887543 2 789999999983 345
Q ss_pred EecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 383 YCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 383 ~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++. |++|++||..|||++++|+-..
T Consensus 333 ~~~-----------~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 333 SAG-----------TEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp ETT-----------TTEEEEEESSSCEEEEECCCCS
T ss_pred eCC-----------CCeEEEEECCCCCEEEEEECCC
Confidence 443 7999999999999999998654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.74 E-value=1.2e-16 Score=161.18 Aligned_cols=293 Identities=8% Similarity=0.046 Sum_probs=168.2
Q ss_pred ceEEEEEe--cCEEEEEe---------CCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCccc
Q 011452 97 KIIEIVAA--RDIVFALA---------QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (485)
Q Consensus 97 ~V~~i~~s--~~~ias~s---------~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL 165 (485)
.|.++.|| |++||..+ .++.+.+||+++|+.. .+.. +.+.+..+.|||||+.||.++ +
T Consensus 63 ~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~~-~l~~-~~~~~~~~~~SPDG~~ia~~~----~----- 131 (470)
T d2bgra1 63 SINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI-TEER-IPNNTQWVTWSPVGHKLAYVW----N----- 131 (470)
T ss_dssp CCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-CSSC-CCTTEEEEEECSSTTCEEEEE----T-----
T ss_pred ccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCccc-cccc-CCccccccccccCcceeeEee----c-----
Confidence 34455555 88888874 3678889999987754 5766 667899999999999999865 3
Q ss_pred ceeEEEEeEeccCCcCccc------ceeee--------ccccCceEEEEeCCCCeEEEEeeCCCc-EEEe----------
Q 011452 166 RCRSTRIEYIRRGKPDAGF------ALFES--------ESLKWPGFVEFDDVNGKVLTYSAQDSI-YKVF---------- 220 (485)
Q Consensus 166 ~~~t~~lw~i~~G~~~~~~------~lf~~--------~~~~~~~~V~Fs~pnG~~Las~s~D~t-iKlW---------- 220 (485)
..+.+|+...|+..+-. ..|.. +.......+.|| |||+.||+...|.+ ++.|
T Consensus 132 --~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wS-PDGk~ia~~~~d~~~v~~~~~~~~~~~~~ 208 (470)
T d2bgra1 132 --NDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWS-PNGTFLAYAQFNDTEVPLIEYSFYSDESL 208 (470)
T ss_dssp --TEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEEC-TTSSEEEEEEEECTTCCEEEEEECCSTTC
T ss_pred --ccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEEC-CCCCccceeEecCCcCceEEEEeeccCCC
Confidence 37888888777652100 01110 122233457898 89999999876544 4433
Q ss_pred -------------------------ecCCCeEEEEE-----c--------CCcEEEEEEcCCceEEEE-EcCC-CCeeEE
Q 011452 221 -------------------------DLKNYTMLYSI-----S--------DKNVQEIKISPGIMLLIF-TKAS-GHVPLK 260 (485)
Q Consensus 221 -------------------------dl~~g~~l~tl-----~--------~~~V~~VafSpg~~ll~s-ss~~-~D~tIk 260 (485)
|+.++...... . +..+..+.+++++.++.. .... ....+.
T Consensus 209 ~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~ 288 (470)
T d2bgra1 209 QYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMD 288 (470)
T ss_dssp SSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEE
T ss_pred CCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEE
Confidence 33322211000 0 113456778865544433 2222 224455
Q ss_pred EE--ecCCCeEEEEeecC------Cc-----ceeEEEEEecCCCEEE-EEeCCCcEEEE--ECCCCeeEEecccCCCceE
Q 011452 261 IL--SIEDGTVLKSFNHL------LH-----RNKKVDFIEQFNEKLL-VKQENENLQIL--DVRNFELTEVSRTEFMTPS 324 (485)
Q Consensus 261 lW--di~tG~~L~tl~~~------~~-----~~~~V~f~~~~~~~ll-s~s~D~tIkIW--Dv~tg~~~~~l~gh~~~v~ 324 (485)
++ |..+|........+ .+ ......|....++.++ .+..|+..+|| +...+++.....|+ ..|.
T Consensus 289 ~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~-~~v~ 367 (470)
T d2bgra1 289 ICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGT-WEVI 367 (470)
T ss_dssp EEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSS-SCEE
T ss_pred EEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCC-eeEE
Confidence 55 55677665432110 01 1112233323334433 34577665555 67666666555554 4566
Q ss_pred EEEEcCCCcE-EEEEe--CCc---EEEEeC--C-CcEEEEe----ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCC
Q 011452 325 AFIFLYENQL-FLTFR--NRT---VAVWNF--R-GELVTSF----EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDP 391 (485)
Q Consensus 325 avaFspdg~l-laS~s--D~T---IklWd~--~-G~ll~tl----~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~ 391 (485)
.+ ++++++. +.++. +.+ -.||-+ . +...+.| .+|... +.+++|||||+++|-.+.
T Consensus 368 ~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~-----~~s~~fSpdgky~~~~~s------ 435 (470)
T d2bgra1 368 GI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQ-----YYSVSFSKEAKYYQLRCS------ 435 (470)
T ss_dssp EE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBC-----BEEEEECTTSSEEEEEEC------
T ss_pred EE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCC-----EEEEEECCCCCEEEEEec------
Confidence 65 3333333 33443 332 134433 3 2333333 355544 899999999999874442
Q ss_pred CCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 392 LAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 392 ~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
+...-+++||+..+|+++..|+.+.
T Consensus 436 --~~~~P~~~l~~~~~g~~v~~le~n~ 460 (470)
T d2bgra1 436 --GPGLPLYTLHSSVNDKGLRVLEDNS 460 (470)
T ss_dssp --SBSSCEEEEEETTTTEEEEEEECCH
T ss_pred --CCCCCeEEEEECCCCCEEEEEeccH
Confidence 1234579999999999999998753
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.68 E-value=6.1e-18 Score=176.15 Aligned_cols=304 Identities=10% Similarity=-0.004 Sum_probs=193.5
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecC-----------------------------CcccEEEEEEeeCCCEEEEEEeec
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVT-----------------------------ADEVIRSLFYNKNNDSLITVSVYA 158 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~-----------------------------~~~~i~sv~~spdg~~Las~S~d~ 158 (485)
++|++++|++++|++.+++.|+++.-. |.-......++|||++|..+. .
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d--~ 91 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIND--K 91 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEE--T
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEc--C
Confidence 578889999999999999999986321 111244555689999997633 3
Q ss_pred CCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCe--EEEEeeCCC-----------------cEEE
Q 011452 159 SDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGK--VLTYSAQDS-----------------IYKV 219 (485)
Q Consensus 159 ~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~--~Las~s~D~-----------------tiKl 219 (485)
.++ ++.++|+.+++..+ ..+......+..++|+ |+|+ +++..+.+. .+..
T Consensus 92 ~~~-------rVavIDl~t~k~~~---ii~iP~g~gphgi~~s-pdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~ 160 (441)
T d1qnia2 92 ANT-------RVARIRLDIMKTDK---ITHIPNVQAIHGLRLQ-KVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTA 160 (441)
T ss_dssp TTT-------EEEEEETTTTEEEE---EEECTTCCCEEEEEEC-CSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEE
T ss_pred CCC-------EEEEEECCCCcEee---EEecCCCCCccceEEe-ccCCEEEEEeccCCcccccCcccccccccccceEEe
Confidence 444 78888988887743 2221122345579998 7888 555555442 3456
Q ss_pred eecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeC
Q 011452 220 FDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQE 298 (485)
Q Consensus 220 Wdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~ 298 (485)
+|..+.+...++. +.....++|+|++..+..++... ..+-.++..+.+....+... ..-..++++ +++.++. -+.
T Consensus 161 iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~ns-e~~~~id~~t~~~~d~i~v~-n~p~~~~~~-~dGk~~~-v~~ 236 (441)
T d1qnia2 161 IDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNS-ERAVDLAGTMRNDRDWVVVF-NVERIAAAV-KAGNFKT-IGD 236 (441)
T ss_dssp EETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCT-TCCSSHHHHTCSSBCEEEEE-EHHHHHHHH-HTTCCBC-CTT
T ss_pred ecCccceeeEEEecCCCccceEECCCCCEEEEEecCC-CceEEEeccCcceEEEEEeC-CccceEEEe-cCCCEEE-eCC
Confidence 8888888777775 56788999999777666544332 22333444444443333210 011123333 5555443 356
Q ss_pred CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEE-Ee-CCcEEEEeCCCcEEEEeecCCCCCCCC---------C
Q 011452 299 NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLT-FR-NRTVAVWNFRGELVTSFEDHLLWHPDC---------N 367 (485)
Q Consensus 299 D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS-~s-D~TIklWd~~G~ll~tl~gH~~~~~~~---------~ 367 (485)
++.+.|++..+.+.+.++..+. .+..++++|||+++.. +. |+||.+||++- +...|+++..+ ..+ .
T Consensus 237 ~~v~vvd~~~~~~v~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k-~~~~~~~~~~~-~~~~~~~~~~glg 313 (441)
T d1qnia2 237 SKVPVVDGRGESEFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK-LDDLFEDKIEL-RDTIVAEPELGLG 313 (441)
T ss_dssp CCCCEEECSSSCSSEEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG-HHHHTTTSSCG-GGGEEECCBCCSC
T ss_pred CCcEEEEcccCCceEEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeeh-hhhHhhccCCc-ceEEEeecccccC
Confidence 7899999888777777766554 5788999999998755 45 99999999741 11122222211 000 1
Q ss_pred eeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCC----------CeEEEEecCCCCCCCCcccccCCCCCCCCc
Q 011452 368 TNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILT----------GKCLAKIRASNGLPAENECSCSGDYSSGSC 437 (485)
Q Consensus 368 v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~T----------Gk~l~tl~gH~~~~~~~~~~~~~~~~~~~~ 437 (485)
..-.+|.++|..+.|..- |.+|..|++.. ...+.++.-|...
T Consensus 314 plh~~fd~~g~~yts~~~-----------ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~----------------- 365 (441)
T d1qnia2 314 PLHTTFDGRGNAYTTLFI-----------DSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQP----------------- 365 (441)
T ss_dssp EEEEEECSSSEEEEEETT-----------TTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE-----------------
T ss_pred cccceecCCceEEEcccc-----------cceEEEeccchhhhhhccCCCceeEeccccccCC-----------------
Confidence 344689999998888765 79999999741 2355566333210
Q ss_pred cccccccccccccchhcccCCeEEEEEcCCCCEEEEec
Q 011452 438 NVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGN 475 (485)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs 475 (485)
-| +..+.+.+|+|||++|+|++
T Consensus 366 ---GH-------------~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 366 ---GH-------------NHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp ---EE-------------EEETTTTSTTCCCCEEEEEE
T ss_pred ---CC-------------CccccccccCCCCcEEEecC
Confidence 01 11566788999999999994
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.52 E-value=2e-11 Score=116.17 Aligned_cols=235 Identities=11% Similarity=0.206 Sum_probs=172.1
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--------CcEEEEEEcC-CceEEEEEcCCCCeeEEE
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--------~~V~~VafSp-g~~ll~sss~~~D~tIkl 261 (485)
.+.+|..|+++ ++|+++++....+.|++||. +|+.+..+.. ..-..+++.+ .+..+.... .....|.+
T Consensus 21 ~f~~P~gvavd-~dg~i~VaD~~n~rI~v~d~-~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~i~~ 97 (279)
T d1q7fa_ 21 QFTEPSGVAVN-AQNDIIVADTNNHRIQIFDK-EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER-SPTHQIQI 97 (279)
T ss_dssp CBSCEEEEEEC-TTCCEEEEEGGGTEEEEECT-TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC-GGGCEEEE
T ss_pred eECCccEEEEc-CCCCEEEEECCCCEEEEEeC-CCCEEEEecccCCCcccccccccccccccccccceecc-CCcccccc
Confidence 36688899998 79999999888899999995 5888877731 1345677664 334333322 23367888
Q ss_pred EecCCCeEEEEeec-CCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEE
Q 011452 262 LSIEDGTVLKSFNH-LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 262 Wdi~tG~~L~tl~~-~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~ 338 (485)
++. +|+...++.. .......+++. +++..+++....+.+.++|.. ++.+..+ ..+...+..+++.++|+++++.
T Consensus 98 ~~~-~g~~~~~~~~~~~~~p~~~avd-~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d 174 (279)
T d1q7fa_ 98 YNQ-YGQFVRKFGATILQHPRGVTVD-NKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD 174 (279)
T ss_dssp ECT-TSCEEEEECTTTCSCEEEEEEC-TTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred ccc-cccceeecCCCcccccceeccc-cCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeee
Confidence 885 7888888752 23344567763 445545555677788888865 5555553 4577889999999999999998
Q ss_pred e-CCcEEEEeCCCcEEEEee--cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEec
Q 011452 339 R-NRTVAVWNFRGELVTSFE--DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIR 415 (485)
Q Consensus 339 s-D~TIklWd~~G~ll~tl~--gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~ 415 (485)
. .+.|+++|.+|+.+.++- ++... -.+|++.|+|+++++-+. +.+.|.+++ .+|+.+.++.
T Consensus 175 ~~~~~V~~~d~~G~~~~~~g~~g~~~~-----P~giavD~~G~i~Vad~~----------~~~~v~~f~-~~G~~~~~~~ 238 (279)
T d1q7fa_ 175 NRAHCVKVFNYEGQYLRQIGGEGITNY-----PIGVGINSNGEILIADNH----------NNFNLTIFT-QDGQLISALE 238 (279)
T ss_dssp GGGTEEEEEETTCCEEEEESCTTTSCS-----EEEEEECTTCCEEEEECS----------SSCEEEEEC-TTSCEEEEEE
T ss_pred ccccceeeeecCCceeeeecccccccC-----CcccccccCCeEEEEECC----------CCcEEEEEC-CCCCEEEEEe
Confidence 8 999999999999999884 33322 579999999999987543 246899999 5799999986
Q ss_pred CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEEcc
Q 011452 416 ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHVWS 484 (485)
Q Consensus 416 gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVklWd 484 (485)
.... ...-+.|+++|||+.++ ++.++.|++|+
T Consensus 239 ~~~~------------------------------------~~~p~~vav~~dG~l~V-~~~n~~v~~fr 270 (279)
T d1q7fa_ 239 SKVK------------------------------------HAQCFDVALMDDGSVVL-ASKDYRLYIYR 270 (279)
T ss_dssp ESSC------------------------------------CSCEEEEEEETTTEEEE-EETTTEEEEEE
T ss_pred CCCC------------------------------------CCCEeEEEEeCCCcEEE-EeCCCeEEEEE
Confidence 5431 01567899999998655 45789999986
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.50 E-value=9.1e-15 Score=151.94 Aligned_cols=278 Identities=9% Similarity=-0.026 Sum_probs=180.3
Q ss_pred ccccCCCCcccccccccccccceEEEEEecCEEEEE-eCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEE
Q 011452 76 YDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFAL-AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITV 154 (485)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~s~V~~i~~s~~~ias~-s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~ 154 (485)
.|+|.|-..+..+.|+ |++|+.. ..+.++.++|++|+++...+.-.+......++|+|||+++-.+
T Consensus 67 gd~hhP~~s~t~gtpD-------------Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~ 133 (441)
T d1qnia2 67 GDCHHPHISMTDGRYD-------------GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF 133 (441)
T ss_dssp CCBCCCEEEEETTEEE-------------EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred CcccCCCcceecccCC-------------CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence 5788887777777787 8888554 6888999999999999887765455679999999999964333
Q ss_pred EeecCCCC----------cccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC-cEEEeecC
Q 011452 155 SVYASDNF----------SSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS-IYKVFDLK 223 (485)
Q Consensus 155 S~d~~~d~----------stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~-tiKlWdl~ 223 (485)
.. +.+.. .--+...+...|..+.+. +++-..-..+..++|+ |||+++...+.+. .+-.++..
T Consensus 134 ~~-~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v-----~~qI~v~~~p~~v~~s-pdGk~a~vt~~nse~~~~id~~ 206 (441)
T d1qnia2 134 CN-AEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV-----AWQVIVDGNLDNTDAD-YTGKYATSTCYNSERAVDLAGT 206 (441)
T ss_dssp EE-ECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE-----EEEEEESSCCCCEEEC-SSSSEEEEEESCTTCCSSHHHH
T ss_pred ec-cCCcccccCcccccccccccceEEeecCcccee-----eEEEecCCCccceEEC-CCCCEEEEEecCCCceEEEecc
Confidence 22 11110 001112333345444333 2332112346689998 8999887776543 34344444
Q ss_pred CCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCc
Q 011452 224 NYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENEN 301 (485)
Q Consensus 224 ~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~t 301 (485)
+.+.+..+. .+.-..++++|+++.+.. ..+..+.|++..+.+.++++... ..-..|+++ |||.+++++ ..|.|
T Consensus 207 t~~~~d~i~v~n~p~~~~~~~dGk~~~v---~~~~v~vvd~~~~~~v~~~IPvg-ksPhGv~vS-PDGkyl~~~~~~~~t 281 (441)
T d1qnia2 207 MRNDRDWVVVFNVERIAAAVKAGNFKTI---GDSKVPVVDGRGESEFTRYIPVP-KNPHGLNTS-PDGKYFIANGKLSPT 281 (441)
T ss_dssp TCSSBCEEEEEEHHHHHHHHHTTCCBCC---TTCCCCEEECSSSCSSEEEECCB-SSCCCEEEC-TTSCEEEEECTTSSB
T ss_pred CcceEEEEEeCCccceEEEecCCCEEEe---CCCCcEEEEcccCCceEEEEeCC-CCccCceEC-CCCCEEEEeCCcCCc
Confidence 444332221 112223566776665543 22367888888887888888743 223578875 889988776 59999
Q ss_pred EEEEECCCCeeEEecccCC-------------CceEEEEEcCCCcEEEEEe-CCcEEEEeCC-------C----cEEEEe
Q 011452 302 LQILDVRNFELTEVSRTEF-------------MTPSAFIFLYENQLFLTFR-NRTVAVWNFR-------G----ELVTSF 356 (485)
Q Consensus 302 IkIWDv~tg~~~~~l~gh~-------------~~v~avaFspdg~llaS~s-D~TIklWd~~-------G----~ll~tl 356 (485)
|.+||+++-+ +.+.++. -.+.-..|.++|..+.|.. |.+|..|++. | ..+..+
T Consensus 282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~ 359 (441)
T d1qnia2 282 VSVIAIDKLD--DLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKL 359 (441)
T ss_dssp EEEEEGGGHH--HHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEE
T ss_pred EEEEEeehhh--hHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEecc
Confidence 9999987532 1111111 1233357999999999998 9999999963 1 244555
Q ss_pred -----ecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 357 -----EDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 357 -----~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
.||... +.+..|+|||++|+|+++
T Consensus 360 ~v~y~~GH~~~-----~~~~t~~pdGk~l~s~~k 388 (441)
T d1qnia2 360 DVQYQPGHNHA-----SLTESRDADGKWLVVLSK 388 (441)
T ss_dssp ECSSCEEEEEE-----TTTTSTTCCCCEEEEEES
T ss_pred ccccCCCCCcc-----ccccccCCCCcEEEecCc
Confidence 577654 778899999999999976
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=2.7e-10 Score=104.55 Aligned_cols=236 Identities=9% Similarity=0.062 Sum_probs=140.3
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCc
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~ 195 (485)
.+.+-|.+ |.....|.. ..+.+.+-+|||||+.||.++..... ..+.+.+...+.. ..... .....
T Consensus 20 ~l~i~d~d-G~~~~~l~~-~~~~~~sP~wSPDGk~IAf~~~~~~~-------~~~~~~~~~~~~~----~~~~~-~~~~~ 85 (269)
T d2hqsa1 20 ELRVSDYD-GYNQFVVHR-SPQPLMSPAWSPDGSKLAYVTFESGR-------SALVIQTLANGAV----RQVAS-FPRHN 85 (269)
T ss_dssp EEEEEETT-SCSCEEEEE-ESSCEEEEEECTTSSEEEEEECTTSS-------CEEEEEETTTCCE----EEEEC-CSSCE
T ss_pred EEEEEcCC-CCCcEEEec-CCCceeeeEECCCCCEEEEEEeeccC-------cceeeeecccCce----eEEee-eeccc
Confidence 46666666 665556655 35578999999999999987753322 2333334333332 12222 23445
Q ss_pred eEEEEeCCCCeEEEEeeCC-CcEEEeecC--CCeEEEEEc-CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEE
Q 011452 196 GFVEFDDVNGKVLTYSAQD-SIYKVFDLK--NYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVL 270 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D-~tiKlWdl~--~g~~l~tl~-~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L 270 (485)
....|+ |+|+.|+..+.+ +...++... ......... ........+++ +..++..+..+....|.+.++.++...
T Consensus 86 ~~~~~s-pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~ 164 (269)
T d2hqsa1 86 GAPAFS-PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ 164 (269)
T ss_dssp EEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred ccceec-CCCCeeeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce
Confidence 578897 799999887643 222232222 222222222 23444556664 444444444444467777888776544
Q ss_pred EEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEE--ECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe----CCcE
Q 011452 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR----NRTV 343 (485)
Q Consensus 271 ~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIW--Dv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s----D~TI 343 (485)
. +..+........++ |++..++..+ .++...|| |..++.... + .+........|||||+.||-.+ ...|
T Consensus 165 ~-~~~~~~~~~~~~~s-pdg~~~~~~~~~~~~~~i~~~~~~~~~~~~-~-~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l 240 (269)
T d2hqsa1 165 R-ITWEGSQNQDADVS-SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-L-SSTFLDETPSLAPNGTMVIYSSSQGMGSVL 240 (269)
T ss_dssp E-CCCSSSEEEEEEEC-TTSSEEEEEEECSSCEEEEEEETTTCCEEE-C-CCSSSCEEEEECTTSSEEEEEEEETTEEEE
T ss_pred e-eecccccccccccc-cccceeEEEeecCCceeeeEeecccccceE-e-ecCccccceEECCCCCEEEEEEcCCCCcEE
Confidence 3 33333444456665 7788887764 44444444 566555433 3 3444567778999999987554 3478
Q ss_pred EEEeCCCcEEEEeecCCCCCCCCCeeEEEECC
Q 011452 344 AVWNFRGELVTSFEDHLLWHPDCNTNNIYITS 375 (485)
Q Consensus 344 klWd~~G~ll~tl~gH~~~~~~~~v~svafSp 375 (485)
.+|+++|.....|...... +...+|||
T Consensus 241 ~~~~~dg~~~~~lt~~~g~-----~~~p~WSP 267 (269)
T d2hqsa1 241 NLVSTDGRFKARLPATDGQ-----VKFPAWSP 267 (269)
T ss_dssp EEEETTSCCEEECCCSSSE-----EEEEEECC
T ss_pred EEEECCCCCEEEEeCCCCc-----EEeEEeCC
Confidence 8999997777777765443 77888998
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.37 E-value=4.2e-10 Score=106.72 Aligned_cols=235 Identities=11% Similarity=0.187 Sum_probs=165.2
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee-----ccccCceEEEEeCCCCeEEE-Eee
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-----ESLKWPGFVEFDDVNGKVLT-YSA 212 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~-----~~~~~~~~V~Fs~pnG~~La-s~s 212 (485)
-+.|+++|+|+.+++ |. .+ +.|++++ ..|++.. .|.. .....|..+++.+..+..++ ..+
T Consensus 25 P~gvavd~dg~i~Va---D~-~n------~rI~v~d-~~G~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 90 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVA---DT-NN------HRIQIFD-KEGRFKF---QFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 90 (279)
T ss_dssp EEEEEECTTCCEEEE---EG-GG------TEEEEEC-TTSCEEE---EECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred ccEEEEcCCCCEEEE---EC-CC------CEEEEEe-CCCCEEE---EecccCCCcccccccccccccccccccceeccC
Confidence 478999999996654 22 23 5788888 5787622 2322 12335667887654555554 345
Q ss_pred CCCcEEEeecCCCeEEEEEcC---CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--cCCcceeEEEEEe
Q 011452 213 QDSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKKVDFIE 287 (485)
Q Consensus 213 ~D~tiKlWdl~~g~~l~tl~~---~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~~~~~~~~V~f~~ 287 (485)
.++.|++++. +|+...++.. .....+++.+++.++++.... ..+.+++. +|+.+.++. .+......+++.
T Consensus 91 ~~~~i~~~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~--~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d- 165 (279)
T d1q7fa_ 91 PTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKV--MRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVN- 165 (279)
T ss_dssp GGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTT--TEEEEECT-TSCEEEEEECTTTCSSEEEEEEC-
T ss_pred Cccccccccc-cccceeecCCCcccccceeccccCCcEEEEeecc--ceeeEecc-CCceeecccccccccccceeeec-
Confidence 6678888885 6777777742 467899999877777765432 56778884 789998874 333445577764
Q ss_pred cCCCEEEEEeCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCCCcEEEEeecCCCCC
Q 011452 288 QFNEKLLVKQENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFRGELVTSFEDHLLWH 363 (485)
Q Consensus 288 ~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~G~ll~tl~gH~~~~ 363 (485)
+++..+++....+.|+++|.. |+.+..+ .++...+..+++.|+|+++++-+ ++.|.+++.+|+++.++......
T Consensus 166 ~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~G~~~~~~~~~~~~- 243 (279)
T d1q7fa_ 166 DKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKH- 243 (279)
T ss_dssp SSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCC-
T ss_pred cceeEEeeeccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCCCCEEEEEeCCCCC-
Confidence 434344444688999999986 6666655 35777899999999999999865 56899999999999998754422
Q ss_pred CCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 364 PDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 364 ~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
..-..|++.|||+++++. . +..|++|..++.
T Consensus 244 --~~p~~vav~~dG~l~V~~-~-----------n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 244 --AQCFDVALMDDGSVVLAS-K-----------DYRLYIYRYVQL 274 (279)
T ss_dssp --SCEEEEEEETTTEEEEEE-T-----------TTEEEEEECSCC
T ss_pred --CCEeEEEEeCCCcEEEEe-C-----------CCeEEEEEeeee
Confidence 125799999999877753 3 689999997753
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=2.5e-09 Score=97.93 Aligned_cols=226 Identities=11% Similarity=0.116 Sum_probs=133.8
Q ss_pred EEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCC---cEEEeecCCCeE-EEEEcCCcEEEEEEcCC
Q 011452 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTM-LYSISDKNVQEIKISPG 244 (485)
Q Consensus 169 t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~---tiKlWdl~~g~~-l~tl~~~~V~~VafSpg 244 (485)
.+.|-|+ .|.-. ..|... ...+..-+|| |||+.||..+.+. .+-+-+..++.. ..+.....+....|||+
T Consensus 20 ~l~i~d~-dG~~~--~~l~~~--~~~~~sP~wS-PDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spd 93 (269)
T d2hqsa1 20 ELRVSDY-DGYNQ--FVVHRS--PQPLMSPAWS-PDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPD 93 (269)
T ss_dssp EEEEEET-TSCSC--EEEEEE--SSCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTT
T ss_pred EEEEEcC-CCCCc--EEEecC--CCceeeeEEC-CCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCC
Confidence 4555563 45431 233332 3445578998 8999999986543 355556666664 33334567889999986
Q ss_pred ceEEEEEcCCC-CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-CCC--cEEEEECCCCeeEEecccCC
Q 011452 245 IMLLIFTKASG-HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENE--NLQILDVRNFELTEVSRTEF 320 (485)
Q Consensus 245 ~~ll~sss~~~-D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~--tIkIWDv~tg~~~~~l~gh~ 320 (485)
+..++...... ...+..+............+. .......++ ++++.++..+ .++ .|.+.++.++...+.. .+.
T Consensus 94 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~~~ 170 (269)
T d2hqsa1 94 GSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR-SNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-WEG 170 (269)
T ss_dssp SSEEEEEECTTSSCEEEEEETTTCCEEECCCCS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCEECC-CSS
T ss_pred CCeeeEeeecCCccceeecccccccceeeeecc-ccccccccc-cccccceecccccCCceEeeeecccccceeee-ccc
Confidence 66555544322 233334444344443333322 222233333 5566555553 454 5556677766554443 455
Q ss_pred CceEEEEEcCCCcEEEEEe--CCcEEEEe--CCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCC
Q 011452 321 MTPSAFIFLYENQLFLTFR--NRTVAVWN--FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGN 396 (485)
Q Consensus 321 ~~v~avaFspdg~llaS~s--D~TIklWd--~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~ 396 (485)
.......++|||+.++..+ ++...+|- ..+...+.+. +... .....|||||++||-.+. .+.
T Consensus 171 ~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~-----~~~p~~SPDG~~i~f~s~--------~~~ 236 (269)
T d2hqsa1 171 SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLS-STFL-----DETPSLAPNGTMVIYSSS--------QGM 236 (269)
T ss_dssp SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECC-CSSS-----CEEEEECTTSSEEEEEEE--------ETT
T ss_pred ccccccccccccceeEEEeecCCceeeeEeecccccceEee-cCcc-----ccceEECCCCCEEEEEEc--------CCC
Confidence 6677788999999999887 45555554 4444444443 3333 578899999999987664 223
Q ss_pred CCeEEEEeCCCCeEEEEecCCC
Q 011452 397 AGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 397 DgtIklWdl~TGk~l~tl~gH~ 418 (485)
...|.++++..++ ...|....
T Consensus 237 ~~~l~~~~~dg~~-~~~lt~~~ 257 (269)
T d2hqsa1 237 GSVLNLVSTDGRF-KARLPATD 257 (269)
T ss_dssp EEEEEEEETTSCC-EEECCCSS
T ss_pred CcEEEEEECCCCC-EEEEeCCC
Confidence 4679999988555 45566543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.28 E-value=7.9e-10 Score=103.77 Aligned_cols=224 Identities=10% Similarity=0.080 Sum_probs=149.4
Q ss_pred EEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEE
Q 011452 140 RSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (485)
Q Consensus 140 ~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKl 219 (485)
.+|++.+||+..++.. +... +..+ +..++.. ...+.......|..|+|+ ++|.+.++....+.+++
T Consensus 17 ~~vavd~dG~i~v~~~--~~~~------~i~~---~~~~~~~--~~~~~~~~~~~p~gvav~-~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 17 SGVAVDSAGNVYVTSE--GMYG------RVVK---LATGSTG--TTVLPFNGLYQPQGLAVD-GAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp EEEEECTTCCEEEEEC--SSSC------EEEE---EC----C--EEECCCCSCCSCCCEEEC-TTCCEEEEETTTEEEEE
T ss_pred CEEEEcCCCCEEEEEc--CCCC------EEEE---EcCCCce--EEEeccCCccCceEEEEc-CCCCEEEeeeeeceeee
Confidence 7999999999665422 2222 2222 2222221 122322334567899998 79999999988899999
Q ss_pred eecCCCeEEEEEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee-cCCcceeEEEEEecCCCEEEEEe
Q 011452 220 FDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQ 297 (485)
Q Consensus 220 Wdl~~g~~l~tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~-~~~~~~~~V~f~~~~~~~lls~s 297 (485)
++..++..+....+ .....|++.+++.+.+..... ..+.+.+... ..+..+. .-......+++. +++..+++..
T Consensus 83 ~~~~~~~~~~~~~~~~~p~~iavd~~g~i~v~d~~~--~~~~~~~~~~-~~~~~~~~~~~~~p~~i~~~-~~g~~~v~~~ 158 (260)
T d1rwia_ 83 AAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGN--NRVVKLAAGS-KTQTVLPFTGLNDPDGVAVD-NSGNVYVTDT 158 (260)
T ss_dssp CTTCSCCEECCCCSCCSEEEEEECTTCCEEEEEGGG--TEEEEECTTC-SSCEECCCCSCCSCCEEEEC-TTCCEEEEEG
T ss_pred eeeccceeeeeeeeeeecccccccccceeEeecccc--cccccccccc-ceeeeeeecccCCcceeeec-CCCCEeeecc
Confidence 88766666554443 578999999877777665432 3566666543 3333322 112344578875 5565555557
Q ss_pred CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEECCC
Q 011452 298 ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYITSD 376 (485)
Q Consensus 298 ~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafSpD 376 (485)
.++.|..+|............+...+..++|.++|+++++.. ++.|..++..+.....+..-... .-.+|+|++|
T Consensus 159 ~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~----~P~~i~~d~~ 234 (260)
T d1rwia_ 159 DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLN----TPLAVAVDSD 234 (260)
T ss_dssp GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCC----CEEEEEECTT
T ss_pred ccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCC----CeEEEEEeCC
Confidence 888999999987665555557778899999999999999998 88888888876655555332221 1578999999
Q ss_pred CCEEEEEec
Q 011452 377 QDLIISYCK 385 (485)
Q Consensus 377 G~~LaS~s~ 385 (485)
|.++++-..
T Consensus 235 g~l~vad~~ 243 (260)
T d1rwia_ 235 RTVYVADRG 243 (260)
T ss_dssp CCEEEEEGG
T ss_pred CCEEEEECC
Confidence 999887543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.24 E-value=8.4e-09 Score=101.91 Aligned_cols=262 Identities=11% Similarity=0.050 Sum_probs=146.5
Q ss_pred eecccCcE--EEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEe-ccCCcCcccceeeeccccCce
Q 011452 120 FCRETNQR--ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFESESLKWPG 196 (485)
Q Consensus 120 W~~~tG~~--l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i-~~G~~~~~~~lf~~~~~~~~~ 196 (485)
+|.++|++ +..........+.-|+|+|+|++|.+++. + .+..+.+ ..+.+. .+-.......|.
T Consensus 21 fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~----~-------~~~~~~i~~~~~~~---~~~~~~~~~~p~ 86 (365)
T d1jofa_ 21 FDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM----K-------KWSSFAVKSPTEIV---HEASHPIGGHPR 86 (365)
T ss_dssp EETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB----T-------EEEEEEEEETTEEE---EEEEEECCSSGG
T ss_pred EcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC----C-------cEEEEEEeCCCCeE---EEeeecCCCCcE
Confidence 55555543 22222223344566999999999987552 2 3333443 233321 011111223456
Q ss_pred EEEEeCCCCeE--EEEee-CCCcEEEeecC-CCeE--EEEEc----------------CCcEEEEEEcCCceEEEEEcCC
Q 011452 197 FVEFDDVNGKV--LTYSA-QDSIYKVFDLK-NYTM--LYSIS----------------DKNVQEIKISPGIMLLIFTKAS 254 (485)
Q Consensus 197 ~V~Fs~pnG~~--Las~s-~D~tiKlWdl~-~g~~--l~tl~----------------~~~V~~VafSpg~~ll~sss~~ 254 (485)
.++++ +||+. ++++. ..++|-.+.+. .+.. ++.+. +..+..|+|+|++..+......
T Consensus 87 ~v~~~-~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g 165 (365)
T d1jofa_ 87 ANDAD-TNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT 165 (365)
T ss_dssp GGCTT-SCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred EEEEC-CCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCC
Confidence 78887 78883 44332 23455444432 1111 11111 1257899999977755554433
Q ss_pred CCeeEEEEecC-CCeEEE--Eee--cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEec------------
Q 011452 255 GHVPLKILSIE-DGTVLK--SFN--HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVS------------ 316 (485)
Q Consensus 255 ~D~tIklWdi~-tG~~L~--tl~--~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l------------ 316 (485)
. ..|.++++. +|+... .+. .....-..++|+ |++..+.+. ..+++|.+||+..+......
T Consensus 166 ~-d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~-pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~ 243 (365)
T d1jofa_ 166 A-NKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH-PTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI 243 (365)
T ss_dssp T-TEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred C-CEEEEEEccCCCceeeccceeecCCCCceEEEEEC-CCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence 3 467777653 454432 221 122345689996 677777665 47899999998765432111
Q ss_pred -------ccCCCceEEEEEcCCCcEEEEEe--CCc-----EEEEeCC--CcEEEEeecCCCCCCCCCeeEEEECC-CCCE
Q 011452 317 -------RTEFMTPSAFIFLYENQLFLTFR--NRT-----VAVWNFR--GELVTSFEDHLLWHPDCNTNNIYITS-DQDL 379 (485)
Q Consensus 317 -------~gh~~~v~avaFspdg~llaS~s--D~T-----IklWd~~--G~ll~tl~gH~~~~~~~~v~svafSp-DG~~ 379 (485)
..+...+..++|+|||++|.++. +.+ |..|++. |.+.....-+........-+.++|+| ||++
T Consensus 244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~ 323 (365)
T d1jofa_ 244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW 323 (365)
T ss_dssp CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence 12233567889999999887664 444 7778773 55433222111000001146799998 8999
Q ss_pred EEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 380 IISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 380 LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
|+.+.. .+++|.+|++...
T Consensus 324 l~va~~----------~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 324 MAITDD----------QEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECS----------SSCEEEEEEEETT
T ss_pred EEEEeC----------CCCeEEEEEEeCC
Confidence 988765 2799999987543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.19 E-value=3.6e-09 Score=99.16 Aligned_cols=231 Identities=10% Similarity=0.042 Sum_probs=153.9
Q ss_pred cCceEEEEeCCCCeEEEE-eeCCCcEEEeecCC-CeEEEEEcC-CcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeE
Q 011452 193 KWPGFVEFDDVNGKVLTY-SAQDSIYKVFDLKN-YTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV 269 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las-~s~D~tiKlWdl~~-g~~l~tl~~-~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~ 269 (485)
..|..|+++ +||.+.++ .+..+.+..++... +.......+ ..-..|+++|++.+.++... ...+++++-.++..
T Consensus 14 ~~P~~vavd-~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~--~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 14 LSPSGVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFN--NRVVTLAAGSNNQT 90 (260)
T ss_dssp CCEEEEEEC-TTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETT--TEEEEECTTCSCCE
T ss_pred CCCCEEEEc-CCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeee--eceeeeeeecccee
Confidence 467899998 78986554 45566666665442 222222222 35678999988888777544 37888888777777
Q ss_pred EEEeecCCcceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeC
Q 011452 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNF 348 (485)
Q Consensus 270 L~tl~~~~~~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~ 348 (485)
+..+.+. .....|++. +++..+++-..+..+...+............-...+..+++.|+|+++++.. ++.|..+|.
T Consensus 91 ~~~~~~~-~~p~~iavd-~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 91 VLPFDGL-NYPEGLAVD-TQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp ECCCCSC-CSEEEEEEC-TTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred eeeeeee-eeccccccc-ccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence 6655432 445678874 4454444445677788888776554444334456789999999999999888 889999999
Q ss_pred CCcEEEEee-cCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccc
Q 011452 349 RGELVTSFE-DHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECS 427 (485)
Q Consensus 349 ~G~ll~tl~-gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~ 427 (485)
+|..+..+. ..... -+.|+|.|+|++.++... .+.|..++...+ ....+..-.
T Consensus 169 ~~~~~~~~~~~~~~~-----p~gi~~d~~g~l~vsd~~-----------~~~i~~~~~~~~-~~~~~~~~~--------- 222 (260)
T d1rwia_ 169 ESNNQVVLPFTDITA-----PWGIAVDEAGTVYVTEHN-----------TNQVVKLLAGST-TSTVLPFTG--------- 222 (260)
T ss_dssp TTCCEEECCCSSCCS-----EEEEEECTTCCEEEEETT-----------TTEEEEECTTCS-CCEECCCCS---------
T ss_pred ccceeeeeeccccCC-----CccceeeeeeeeeeeecC-----------CCEEEEEeCCCC-eEEEEccCC---------
Confidence 876666554 33333 578999999999988654 577777765433 222222111
Q ss_pred cCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCCCcEEE
Q 011452 428 CSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRHGLVHV 482 (485)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~DgtVkl 482 (485)
+...++|+|++||+++++-..++.|+.
T Consensus 223 ----------------------------~~~P~~i~~d~~g~l~vad~~~~rI~~ 249 (260)
T d1rwia_ 223 ----------------------------LNTPLAVAVDSDRTVYVADRGNDRVVK 249 (260)
T ss_dssp ----------------------------CCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred ----------------------------CCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence 125678999999999888777777653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.15 E-value=1.2e-08 Score=97.33 Aligned_cols=230 Identities=13% Similarity=0.058 Sum_probs=151.3
Q ss_pred CcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCC
Q 011452 125 NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVN 204 (485)
Q Consensus 125 G~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pn 204 (485)
.|.+.++.. ..++.+++++|||.++++.. .+ ++|..++ +.|+. ..++. ....+..++|+ +|
T Consensus 18 ~~v~~~~p~--~~~~e~iAv~pdG~l~vt~~----~~------~~I~~i~-p~g~~---~~~~~--~~~~~~gla~~-~d 78 (302)
T d2p4oa1 18 AKIITSFPV--NTFLENLASAPDGTIFVTNH----EV------GEIVSIT-PDGNQ---QIHAT--VEGKVSGLAFT-SN 78 (302)
T ss_dssp EEEEEEECT--TCCEEEEEECTTSCEEEEET----TT------TEEEEEC-TTCCE---EEEEE--CSSEEEEEEEC-TT
T ss_pred ccEEEECCC--CCCcCCEEECCCCCEEEEeC----CC------CEEEEEe-CCCCE---EEEEc--CCCCcceEEEc-CC
Confidence 444555533 23689999999999887622 22 3555555 56664 12233 23567789998 79
Q ss_pred CeEEEEeeCCCcEEEeecCCCe----EEEEEc-CCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEeec----
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH---- 275 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~----~l~tl~-~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~---- 275 (485)
|.++++...++.+.+|++.... .+.... ....+.+++.|++.+.++.+. +..+..++..++....-+..
T Consensus 79 G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~--~~~i~~~~~~~~~~~~~~~~~~~~ 156 (302)
T d2p4oa1 79 GDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSY--RGAIWLIDVVQPSGSIWLEHPMLA 156 (302)
T ss_dssp SCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETT--TTEEEEEETTTTEEEEEEECGGGS
T ss_pred CCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccc--cccceeeeccCCcceeEecCCccc
Confidence 9999998888888888875432 222333 357899999998888877543 36888888888765433221
Q ss_pred ----CC--cceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeE---EecccCCCceEEEEEcCCCcEEEEEe-CCcEE
Q 011452 276 ----LL--HRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELT---EVSRTEFMTPSAFIFLYENQLFLTFR-NRTVA 344 (485)
Q Consensus 276 ----~~--~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~---~~l~gh~~~v~avaFspdg~llaS~s-D~TIk 344 (485)
+. .....+.+ +++.+..+ +.++.|..+|+...... ... .+...+..++|.+||.++++.. +++|.
T Consensus 157 ~~~~~~~~~~~ngi~~---~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~ 232 (302)
T d2p4oa1 157 RSNSESVFPAANGLKR---FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVV 232 (302)
T ss_dssp CSSTTCCSCSEEEEEE---ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEE
T ss_pred eeeccCcccccccccc---cCCceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEE
Confidence 11 11223443 35666665 58888888887754321 111 1234577899999999999888 99999
Q ss_pred EEeCCCcEEEEee--cCCCCCCCCCeeEEEE---CCCCCEEEEEe
Q 011452 345 VWNFRGELVTSFE--DHLLWHPDCNTNNIYI---TSDQDLIISYC 384 (485)
Q Consensus 345 lWd~~G~ll~tl~--gH~~~~~~~~v~svaf---SpDG~~LaS~s 384 (485)
.++.+|+.....+ ..... ..+++| +||++.|.-.+
T Consensus 233 ~i~p~G~~~~~~~~~~~~~~-----pt~vafg~~~~D~~~Lyvtt 272 (302)
T d2p4oa1 233 RIAPDRSTTIIAQAEQGVIG-----STAVAFGQTEGDCTAIYVVT 272 (302)
T ss_dssp EECTTCCEEEEECGGGTCTT-----EEEEEECCSTTTTTEEEEEE
T ss_pred EECCCCCEEEEEecCCCCCC-----ceEEEEcCCCCCCCEEEEEC
Confidence 9999988654443 33222 789999 78998875443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.13 E-value=2.7e-08 Score=94.83 Aligned_cols=225 Identities=10% Similarity=0.034 Sum_probs=141.9
Q ss_pred cCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC--CCeEE
Q 011452 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE--DGTVL 270 (485)
Q Consensus 193 ~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~--tG~~L 270 (485)
.|+..++++ |||.++++...+++|..||.......+.-....+..++|+|++.++++...+ ..+.+|+.. +|+..
T Consensus 28 ~~~e~iAv~-pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~--~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASA-PDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNA--DSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEEC-TTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEECT--TSCEEEEEECTTSCEE
T ss_pred CCcCCEEEC-CCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCC--ceEEEEEeccccccee
Confidence 467789998 8999999999999999999654333333335789999999877776664433 456666543 23332
Q ss_pred EEee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEecc----------cCCCceEEEEEcCCCcEEEEE
Q 011452 271 KSFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVSR----------TEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 271 ~tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l~----------gh~~~v~avaFspdg~llaS~ 338 (485)
.-.. ........+++. +++ .+.++ +.++.+..+|..++.....+. .....++.+.+.. +.++.+.
T Consensus 105 ~~~~~~~~~~~n~i~~~-~~g-~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~ 181 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPL-SDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSN 181 (302)
T ss_dssp EEEECTTCSCEEEEEES-SSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEE
T ss_pred eccccCCccccceeEEc-cCC-CEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Cceeeec
Confidence 2211 112334577764 444 55554 688899999998876433221 2233556666654 3455555
Q ss_pred e-CCcEEEEeCC--CcE--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEE
Q 011452 339 R-NRTVAVWNFR--GEL--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAK 413 (485)
Q Consensus 339 s-D~TIklWd~~--G~l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~t 413 (485)
+ ++.|..++.. +.. ...+..... ..+++|.+||.+.++... +++|..++.. |+....
T Consensus 182 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~------pdgia~d~dG~l~va~~~-----------~~~V~~i~p~-G~~~~~ 243 (302)
T d2p4oa1 182 TEKMLLLRIPVDSTDKPGEPEIFVEQTN------IDDFAFDVEGNLYGATHI-----------YNSVVRIAPD-RSTTII 243 (302)
T ss_dssp TTTTEEEEEEBCTTSCBCCCEEEEESCC------CSSEEEBTTCCEEEECBT-----------TCCEEEECTT-CCEEEE
T ss_pred CCCCeEEeccccccccccccccccCCCC------CcceEECCCCCEEEEEcC-----------CCcEEEECCC-CCEEEE
Confidence 6 8888888874 221 122222221 457999999998887654 6888888854 664433
Q ss_pred ecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEE---cCCCCEEEEecCC
Q 011452 414 IRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFY---DEDRNEIYTGNRH 477 (485)
Q Consensus 414 l~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~f---spDg~~LaSgs~D 477 (485)
..... .+...++|+| +||+++||-++..
T Consensus 244 ~~~~~------------------------------------~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 244 AQAEQ------------------------------------GVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp ECGGG------------------------------------TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred EecCC------------------------------------CCCCceEEEEcCCCCCCCEEEEECCC
Confidence 33221 1137899999 7899999865543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.09 E-value=5.6e-09 Score=103.18 Aligned_cols=248 Identities=10% Similarity=0.031 Sum_probs=139.9
Q ss_pred CceEEEEeCCCCeEEEEeeCCCcEEEeecC-CCeEEEEE---cCCcEEEEEEcCCceE--EEEEcCCCCeeEEEEec---
Q 011452 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-NYTMLYSI---SDKNVQEIKISPGIML--LIFTKASGHVPLKILSI--- 264 (485)
Q Consensus 194 ~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~-~g~~l~tl---~~~~V~~VafSpg~~l--l~sss~~~D~tIklWdi--- 264 (485)
.+.+++|+ ++|++|..+. .+.+..|.+. ++.++... .+.....++++|++.. ++.+. ....+|..+.+
T Consensus 41 ~~s~la~s-~d~~~ly~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~-~~~~~v~~~~~~~~ 117 (365)
T d1jofa_ 41 PISWMTFD-HERKNIYGAA-MKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK-QPPYAVYANPFYKF 117 (365)
T ss_dssp CCSEEEEC-TTSSEEEEEE-BTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS-STTCCEEEEEESSS
T ss_pred CCCEEEEc-CCCCEEEEEe-CCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec-CCCCEEEEeEccCC
Confidence 34479998 7999886655 4567777765 34443322 1334556778876652 32221 11233333322
Q ss_pred ---------C-CCeEEEE----eecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECC-CCeeEEe----cccCCCceE
Q 011452 265 ---------E-DGTVLKS----FNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR-NFELTEV----SRTEFMTPS 324 (485)
Q Consensus 265 ---------~-tG~~L~t----l~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~-tg~~~~~----l~gh~~~v~ 324 (485)
. +|+.-.. -.....+...|+|+ |++.++++.. ....|.+|++. ++.+... .......+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~s-PdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr 196 (365)
T d1jofa_ 118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFD-PTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR 196 (365)
T ss_dssp CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred CCcceeEeeeecceecCcccCcccCCCCcceEEEEC-CCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence 1 1111111 11122345689996 7888888875 45678888754 3443222 123456899
Q ss_pred EEEEcCCCcEEEEEe--CCcEEEEeCC-Cc--EEEEeecCCCC------------CCCCCeeEEEECCCCCEEEEEecCC
Q 011452 325 AFIFLYENQLFLTFR--NRTVAVWNFR-GE--LVTSFEDHLLW------------HPDCNTNNIYITSDQDLIISYCKAD 387 (485)
Q Consensus 325 avaFspdg~llaS~s--D~TIklWd~~-G~--ll~tl~gH~~~------------~~~~~v~svafSpDG~~LaS~s~d~ 387 (485)
.++|+|||+++.... +++|.+|+.+ ++ .+.+....... ........|+|+|||++|..+...+
T Consensus 197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~ 276 (365)
T d1jofa_ 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence 999999999875554 9999999985 33 33322111100 0001145799999999998876521
Q ss_pred CCCCCCcCCCCeEEEEeCCC-CeEEEEec-CCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc
Q 011452 388 SDDPLAEGNAGSINISNILT-GKCLAKIR-ASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD 465 (485)
Q Consensus 388 ~~d~~~~~~DgtIklWdl~T-Gk~l~tl~-gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs 465 (485)
| ......|-.|++.. |....... .+.. ..+ ..-++++|+
T Consensus 277 --~---~~~~~~i~~~~~~~~g~~~~~~~~~~~~---------~~G-------------------------~~p~~i~~~ 317 (365)
T d1jofa_ 277 --K---FELQGYIAGFKLRDCGSIEKQLFLSPTP---------TSG-------------------------GHSNAVSPC 317 (365)
T ss_dssp --S---TTSCCEEEEEEECTTSCEEEEEEEEECS---------SCC-------------------------TTCCCEEEC
T ss_pred --C---CccceEEEEEEecCCCceeeEeEeeEEE---------cCC-------------------------CCccEEEec
Confidence 1 11234576676643 33222111 1110 000 145679999
Q ss_pred C-CCCEEEEe-cCCCcEEEcc
Q 011452 466 E-DRNEIYTG-NRHGLVHVWS 484 (485)
Q Consensus 466 p-Dg~~LaSg-s~DgtVklWd 484 (485)
| +|++|+.+ ..+++|.||+
T Consensus 318 p~~G~~l~va~~~s~~v~v~~ 338 (365)
T d1jofa_ 318 PWSDEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEE
T ss_pred CCCCCEEEEEeCCCCeEEEEE
Confidence 8 89977655 5789999996
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.95 E-value=7.1e-08 Score=87.69 Aligned_cols=229 Identities=14% Similarity=0.061 Sum_probs=133.2
Q ss_pred EEEeeC--CCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC----CC
Q 011452 142 LFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ----DS 215 (485)
Q Consensus 142 v~~spd--g~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~----D~ 215 (485)
++.||| |+.||.++. + .+-+.++..|+. .+|-.. .......+|| |||+.||..+. +.
T Consensus 4 ~~~sPdi~G~~v~f~~~----~-------dl~~~d~~~g~~---~~Lt~~--~~~~~~p~~S-PDG~~iaf~~~~~~~~~ 66 (281)
T d1k32a2 4 LLLNPDIHGDRIIFVCC----D-------DLWEHDLKSGST---RKIVSN--LGVINNARFF-PDGRKIAIRVMRGSSLN 66 (281)
T ss_dssp CCEEEEEETTEEEEEET----T-------EEEEEETTTCCE---EEEECS--SSEEEEEEEC-TTSSEEEEEEEESTTCC
T ss_pred cccCCCCCCCEEEEEeC----C-------cEEEEECCCCCE---EEEecC--CCcccCEEEC-CCCCEEEEEEeeCCCCC
Confidence 357899 999988762 2 445557777775 334222 2344568898 89999998642 22
Q ss_pred --cEEEeecCCCeEEEE-EcC-------CcEEEEEEcCCceEEEEEcCCC----CeeEEEEecCCCeEEEEeecCCccee
Q 011452 216 --IYKVFDLKNYTMLYS-ISD-------KNVQEIKISPGIMLLIFTKASG----HVPLKILSIEDGTVLKSFNHLLHRNK 281 (485)
Q Consensus 216 --tiKlWdl~~g~~l~t-l~~-------~~V~~VafSpg~~ll~sss~~~----D~tIklWdi~tG~~L~tl~~~~~~~~ 281 (485)
.|-+.++.+++.... ... ..+..++|||++..+++..... ...+.+.+...++...... ....
T Consensus 67 ~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 143 (281)
T d1k32a2 67 TADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNL---GPAT 143 (281)
T ss_dssp EEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCS---CSCS
T ss_pred ceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecC---Cccc
Confidence 366667777775432 111 2456789999776665543322 2346677776666544332 2223
Q ss_pred EEEEEecCCCEEEEE-eC-C----------CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEeCC--cEEEEe
Q 011452 282 KVDFIEQFNEKLLVK-QE-N----------ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFRNR--TVAVWN 347 (485)
Q Consensus 282 ~V~f~~~~~~~lls~-s~-D----------~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~sD~--TIklWd 347 (485)
.+.+ +++..++.. .. + ....++....+........ ........++++...+.+..++ .|-+.|
T Consensus 144 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 220 (281)
T d1k32a2 144 HILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM-STHVSSPVIVGHRIYFITDIDGFGQIYSTD 220 (281)
T ss_dssp EEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECC-SSCCEEEEEETTEEEEEECTTSSCEEEEEE
T ss_pred eeee--cCCCeEEEeeccccceeeeeccCCcceeeeeccccceeeccCC-ccccceeeeeccccceecccccccceEEEe
Confidence 3333 345555543 21 1 2233334444444444333 3345556667765544443333 566667
Q ss_pred CCCcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEE
Q 011452 348 FRGELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCL 411 (485)
Q Consensus 348 ~~G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l 411 (485)
++|+.++.++.+..+ ....|||||+.|+-.. ++.|.+.|+.+|+.-
T Consensus 221 ~~g~~~~~lt~~~~~------~~~~~SpDG~~I~f~~------------~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 221 LDGKDLRKHTSFTDY------YPRHLNTDGRRILFSK------------GGSIYIFNPDTEKIE 266 (281)
T ss_dssp TTSCSCEECCCCCSS------CEEEEEESSSCEEEEE------------TTEEEEECTTTCCEE
T ss_pred CCCCceEEeecCCCc------ccccCcCCCCEEEEEe------------CCEEEEEECCCCCEE
Confidence 777666666655433 2346899999998643 588999999988754
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.93 E-value=5.4e-07 Score=86.97 Aligned_cols=234 Identities=10% Similarity=0.088 Sum_probs=147.2
Q ss_pred eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcCCceEEEEEcCCCCe--eEEEEecCCCeEEE
Q 011452 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHV--PLKILSIEDGTVLK 271 (485)
Q Consensus 196 ~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSpg~~ll~sss~~~D~--tIklWdi~tG~~L~ 271 (485)
..++|| ++|.+..+....+.|.-||.++++....+. ......++|+|++.++++...+... .|-..+..+++...
T Consensus 43 EG~~~D-~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~ 121 (319)
T d2dg1a1 43 EGLNFD-RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQD 121 (319)
T ss_dssp EEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEE
T ss_pred EeCEEC-CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeee
Confidence 468897 799988888889999999988876555543 3578899999877777765443222 34444555554444
Q ss_pred EeecC--CcceeEEEEEecCCCEEEEEeC-------CCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcE-EEEEe-C
Q 011452 272 SFNHL--LHRNKKVDFIEQFNEKLLVKQE-------NENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQL-FLTFR-N 340 (485)
Q Consensus 272 tl~~~--~~~~~~V~f~~~~~~~lls~s~-------D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~l-laS~s-D 340 (485)
..... ......+++. ++|. +.++.. -+.+..++...+..... ......++.++|+||++. +++-+ .
T Consensus 122 ~~~~~~~~~~~nd~~~d-~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~-~~~~~~pnGia~s~dg~~lyvad~~~ 198 (319)
T d2dg1a1 122 IIEDLSTAYCIDDMVFD-SKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI-IQNISVANGIALSTDEKVLWVTETTA 198 (319)
T ss_dssp EECSSSSCCCEEEEEEC-TTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE-EEEESSEEEEEECTTSSEEEEEEGGG
T ss_pred eccCCCcccCCcceeEE-eccc-eeecccccccccCcceeEEEecccceeEEE-eeccceeeeeeeccccceEEEecccC
Confidence 33321 1223467764 5554 444421 12355556554443333 334557899999999985 46666 8
Q ss_pred CcEEEEeCC--CcEEEEeecCC--CCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 341 RTVAVWNFR--GELVTSFEDHL--LWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 341 ~TIklWd~~--G~ll~tl~gH~--~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
+.|..++++ |.......... .......-..+++.++|.+.++... .+.|.++| .+|+.+.++.-
T Consensus 199 ~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----------~g~V~~~~-p~G~~l~~i~~ 266 (319)
T d2dg1a1 199 NRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----------QGRVLVFN-KRGYPIGQILI 266 (319)
T ss_dssp TEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----------TTEEEEEC-TTSCEEEEEEC
T ss_pred CceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----------CCEEEEEC-CCCcEEEEEeC
Confidence 999999874 54433222110 0000001247999999998887664 69999999 57999998853
Q ss_pred CCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEEEecCC
Q 011452 417 SNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIYTGNRH 477 (485)
Q Consensus 417 H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~LaSgs~D 477 (485)
-.. .+.....+++++|.|++..|+..+.|
T Consensus 267 P~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 267 PGR--------------------------------DEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp TTG--------------------------------GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred CCc--------------------------------CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 210 00001267899999999888776543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.84 E-value=1.9e-06 Score=83.16 Aligned_cols=233 Identities=13% Similarity=0.117 Sum_probs=148.3
Q ss_pred ccccCceEEEEeCCCCeEEEEeeC-------CCcEEEeecCCCeEEEEEcC------CcEEEEEEcCCc-eEEEEEcCCC
Q 011452 190 ESLKWPGFVEFDDVNGKVLTYSAQ-------DSIYKVFDLKNYTMLYSISD------KNVQEIKISPGI-MLLIFTKASG 255 (485)
Q Consensus 190 ~~~~~~~~V~Fs~pnG~~Las~s~-------D~tiKlWdl~~g~~l~tl~~------~~V~~VafSpg~-~ll~sss~~~ 255 (485)
+.+..+...+|+ +||.++++... +++|..||.++++....... ..=..++|.|++ .+.++..
T Consensus 15 ~~~~g~EGpa~d-~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~--- 90 (314)
T d1pjxa_ 15 EDIPGAEGPVFD-KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM--- 90 (314)
T ss_dssp CCCTTCEEEEEC-TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET---
T ss_pred cCCCCCeEeEEe-CCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC---
Confidence 345667889997 79998876432 46788999998875443321 234679999855 5555532
Q ss_pred CeeEEEEecCCCeEEEEeecCCc-----ceeEEEEEecCCCEEEEEeC-------------CCcEEEEECC-CCeeEEec
Q 011452 256 HVPLKILSIEDGTVLKSFNHLLH-----RNKKVDFIEQFNEKLLVKQE-------------NENLQILDVR-NFELTEVS 316 (485)
Q Consensus 256 D~tIklWdi~tG~~L~tl~~~~~-----~~~~V~f~~~~~~~lls~s~-------------D~tIkIWDv~-tg~~~~~l 316 (485)
...|...+.++ .....+..... ....++|. ++|...++-+. ..+=+||-+. .|+..+..
T Consensus 91 ~~~i~~~~~~g-~~~~~~~~~~~g~~~~~pndl~~d-~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~ 168 (314)
T d1pjxa_ 91 RLGLLVVQTDG-TFEEIAKKDSEGRRMQGCNDCAFD-YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVD 168 (314)
T ss_dssp TTEEEEEETTS-CEEECCSBCTTSCBCBCCCEEEEC-TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEE
T ss_pred CCeEEEEeCCC-cEEEEEeccccccccCCCcEEEEC-CCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEee
Confidence 24688888754 43333321111 13467774 55544444211 1122444333 35544443
Q ss_pred ccCCCceEEEEEcCCCc-----EEEEEe-CCcEEEEeCC--CcEE-----EEeecCCCCCCCCCeeEEEECCCCCEEEEE
Q 011452 317 RTEFMTPSAFIFLYENQ-----LFLTFR-NRTVAVWNFR--GELV-----TSFEDHLLWHPDCNTNNIYITSDQDLIISY 383 (485)
Q Consensus 317 ~gh~~~v~avaFspdg~-----llaS~s-D~TIklWd~~--G~ll-----~tl~gH~~~~~~~~v~svafSpDG~~LaS~ 383 (485)
.+...++.++|+|++. ++++-+ .+.|..+|+. |.+. ..+.+... +.-.++++.++|.+.++.
T Consensus 169 -~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~----~~pdGiavD~~GnlyVa~ 243 (314)
T d1pjxa_ 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE----GGADGMDFDEDNNLLVAN 243 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS----CEEEEEEEBTTCCEEEEE
T ss_pred -CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEcccccc----ccceeeEEecCCcEEEEE
Confidence 3455788999999875 667766 8888888874 5542 22222211 124589999999998876
Q ss_pred ecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEE
Q 011452 384 CKADSDDPLAEGNAGSINISNILTGKCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALF 463 (485)
Q Consensus 384 s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~ 463 (485)
.. .+.|.++|..+|+.+.++..+. ...++++
T Consensus 244 ~~-----------~g~I~~~dp~~g~~~~~i~~p~--------------------------------------~~~t~~a 274 (314)
T d1pjxa_ 244 WG-----------SSHIEVFGPDGGQPKMRIRCPF--------------------------------------EKPSNLH 274 (314)
T ss_dssp ET-----------TTEEEEECTTCBSCSEEEECSS--------------------------------------SCEEEEE
T ss_pred cC-----------CCEEEEEeCCCCEEEEEEECCC--------------------------------------CCEEEEE
Confidence 54 5889999998888888776543 2788999
Q ss_pred EcCCCCEE-EEecCCCcEEE
Q 011452 464 YDEDRNEI-YTGNRHGLVHV 482 (485)
Q Consensus 464 fspDg~~L-aSgs~DgtVkl 482 (485)
|.||+++| +|.+..++|..
T Consensus 275 fg~d~~~lyVt~~~~g~i~~ 294 (314)
T d1pjxa_ 275 FKPQTKTIFVTEHENNAVWK 294 (314)
T ss_dssp ECTTSSEEEEEETTTTEEEE
T ss_pred EeCCCCEEEEEECCCCcEEE
Confidence 99999865 66677777643
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.82 E-value=4.1e-06 Score=80.61 Aligned_cols=226 Identities=10% Similarity=0.079 Sum_probs=142.2
Q ss_pred cEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC--C
Q 011452 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD--S 215 (485)
Q Consensus 138 ~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D--~ 215 (485)
.+..++|.++|+..++ |-.. +.|.-++...++. ...+. +....|..++|+ +||++++....+ .
T Consensus 41 ~lEG~~~D~~G~Ly~~---D~~~-------g~I~ri~p~g~~~---~~~~~-~~~~~p~gla~~-~dG~l~va~~~~~~~ 105 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLL---DVFE-------GNIFKINPETKEI---KRPFV-SHKANPAAIKIH-KDGRLFVCYLGDFKS 105 (319)
T ss_dssp CEEEEEECTTSCEEEE---ETTT-------CEEEEECTTTCCE---EEEEE-CSSSSEEEEEEC-TTSCEEEEECTTSSS
T ss_pred CcEeCEECCCCCEEEE---ECCC-------CEEEEEECCCCeE---EEEEe-CCCCCeeEEEEC-CCCCEEEEecCCCcc
Confidence 3567899999985544 2222 3444445333332 11121 234567789997 799988875432 3
Q ss_pred cEEEe--ecCCCeEEEEEc----CCcEEEEEEcCCceEEEEEcCCC----CeeEEEEecCCCeEEEEeecCCcceeEEEE
Q 011452 216 IYKVF--DLKNYTMLYSIS----DKNVQEIKISPGIMLLIFTKASG----HVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (485)
Q Consensus 216 tiKlW--dl~~g~~l~tl~----~~~V~~VafSpg~~ll~sss~~~----D~tIklWdi~tG~~L~tl~~~~~~~~~V~f 285 (485)
...++ +..++....... ....+.+++.|+|.+.++..... ...+..++.. |+.+..+......-..++|
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~d-g~~~~~~~~~~~~pnGia~ 184 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPIIQNISVANGIAL 184 (319)
T ss_dssp CCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEEEEEESSEEEEEE
T ss_pred ceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecc-cceeEEEeeccceeeeeee
Confidence 34444 444444433332 24688999998777766643211 1345555553 4444444332344567998
Q ss_pred EecCCCEEEEE-eCCCcEEEEECCC-CeeEEe-------cccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEE
Q 011452 286 IEQFNEKLLVK-QENENLQILDVRN-FELTEV-------SRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTS 355 (485)
Q Consensus 286 ~~~~~~~lls~-s~D~tIkIWDv~t-g~~~~~-------l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~t 355 (485)
+ +++..|.++ +..+.|..+|+.. +..... ..+....+..+++..+|++.++.. ++.|.++|-+|+++.+
T Consensus 185 s-~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~ 263 (319)
T d2dg1a1 185 S-TDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ 263 (319)
T ss_dssp C-TTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred c-cccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEE
Confidence 6 677777666 6889999999763 222111 112234578899999999999988 9999999999999988
Q ss_pred ee------cCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 356 FE------DHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 356 l~------gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
+. +|... +.+++|.|+++.|+..+.
T Consensus 264 i~~P~~~~~~~~~-----~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 264 ILIPGRDEGHMLR-----STHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EECTTGGGTCSCB-----CCEEEECTTSCEEEEEEE
T ss_pred EeCCCcCCCcCce-----eeeEEEeCCCCEEEEEcC
Confidence 75 34434 789999999988877664
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.81 E-value=1.3e-06 Score=84.27 Aligned_cols=240 Identities=12% Similarity=0.082 Sum_probs=148.3
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeee----ccccCceEEEEeCCCCeEEEEeeCC
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQD 214 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~----~~~~~~~~V~Fs~pnG~~Las~s~D 214 (485)
...++|.|||+.+++... ......+-.++..++...|+.. .+.. .....|..++|+ ++|..|..+...
T Consensus 20 ~EGpa~d~dG~ly~~~~~---~~~~~~~~g~I~r~d~~~~~~~----~~~~~~~~~~~g~P~Gl~~~-~dg~~l~vad~~ 91 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPE---VEVNGKPAGEILRIDLKTGKKT----VICKPEVNGYGGIPAGCQCD-RDANQLFVADMR 91 (314)
T ss_dssp CEEEEECTTSCEEEEETT---CEETTEECCEEEEECTTTCCEE----EEECCEETTEECCEEEEEEC-SSSSEEEEEETT
T ss_pred CeEeEEeCCCCEEEEECc---cccccccCCEEEEEECCCCcEE----EEECCccccCCCcceeEEEe-CCCCEEEEEECC
Confidence 456799999997765321 1111112234555565555531 1211 122346689997 788766666666
Q ss_pred CcEEEeecCCCeEEEEEc---CC---cEEEEEEcCCceEEEEEcCC-------------CCeeEEEEecCCCeEEEEeec
Q 011452 215 SIYKVFDLKNYTMLYSIS---DK---NVQEIKISPGIMLLIFTKAS-------------GHVPLKILSIEDGTVLKSFNH 275 (485)
Q Consensus 215 ~tiKlWdl~~g~~l~tl~---~~---~V~~VafSpg~~ll~sss~~-------------~D~tIklWdi~tG~~L~tl~~ 275 (485)
+.+...|.+++....... +. ..++++|.|++.+.++.+.. .++.|..++. +|+......+
T Consensus 92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~ 170 (314)
T d1pjxa_ 92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA 170 (314)
T ss_dssp TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE
T ss_pred CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC
Confidence 778888976654322111 12 36789999977776664321 1123433443 5666554443
Q ss_pred CCcceeEEEEEecCCC----EEEEE-eCCCcEEEEECCC-CeeE-----Eecc-cCCCceEEEEEcCCCcEEEEEe-CCc
Q 011452 276 LLHRNKKVDFIEQFNE----KLLVK-QENENLQILDVRN-FELT-----EVSR-TEFMTPSAFIFLYENQLFLTFR-NRT 342 (485)
Q Consensus 276 ~~~~~~~V~f~~~~~~----~lls~-s~D~tIkIWDv~t-g~~~-----~~l~-gh~~~v~avaFspdg~llaS~s-D~T 342 (485)
...-..++|++ +++ +|.++ +..+.|..+|+.. +... ..+. .+...+..+++..+|+++++.. .+.
T Consensus 171 -~~~pNGi~~~~-d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~ 248 (314)
T d1pjxa_ 171 -FQFPNGIAVRH-MNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH 248 (314)
T ss_dssp -ESSEEEEEEEE-CTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred -cceeeeeEECC-CCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence 23445788874 333 56665 5788898888763 3321 1222 2344678899999999999887 889
Q ss_pred EEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEE-EEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 343 VAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLI-ISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 343 IklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~L-aS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
|.++|.+ |+++.++..+..+ ..+++|.||++.| ++.+. .|+|.--++
T Consensus 249 I~~~dp~~g~~~~~i~~p~~~-----~t~~afg~d~~~lyVt~~~-----------~g~i~~~~~ 297 (314)
T d1pjxa_ 249 IEVFGPDGGQPKMRIRCPFEK-----PSNLHFKPQTKTIFVTEHE-----------NNAVWKFEW 297 (314)
T ss_dssp EEEECTTCBSCSEEEECSSSC-----EEEEEECTTSSEEEEEETT-----------TTEEEEEEC
T ss_pred EEEEeCCCCEEEEEEECCCCC-----EEEEEEeCCCCEEEEEECC-----------CCcEEEEEC
Confidence 9999997 7777777765545 7899999999855 55433 577665554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=2.4e-07 Score=94.77 Aligned_cols=258 Identities=13% Similarity=0.065 Sum_probs=146.9
Q ss_pred EeCCCeEEeeecccCcEEEEeecC--CcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceee
Q 011452 111 LAQSGVCAAFCRETNQRICFLNVT--ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (485)
Q Consensus 111 ~s~dgtiklW~~~tG~~l~tl~g~--~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~ 188 (485)
-..+|.+.+||..+|+.-..+... ..-.+.+..|||||+.|+.+... ..-|.+=.-...-|+|+.+|+.. +|..
T Consensus 33 ~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~-~~~~r~s~~~~~~i~d~~~~~~~---~l~~ 108 (465)
T d1xfda1 33 REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNV-EPIYQHSYTGYYVLSKIPHGDPQ---SLDP 108 (465)
T ss_dssp CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESC-CCCSSSCCCSEEEEEESSSCCCE---ECCC
T ss_pred EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcc-cceeEeeccccEEEEEccCCcee---eccC
Confidence 356788999999988853323221 22356788899999998875421 11122222246778898888762 2322
Q ss_pred ec-cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC---CcE-----------------EEEEEcCCceE
Q 011452 189 SE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNV-----------------QEIKISPGIML 247 (485)
Q Consensus 189 ~~-~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~---~~V-----------------~~VafSpg~~l 247 (485)
.+ .-..+....|| |||+.||... ++.+.+.++.++.......+ ..| .++-|||+++.
T Consensus 109 ~~~~~~~l~~~~wS-PDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~ 186 (465)
T d1xfda1 109 PEVSNAKLQYAGWG-PKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTR 186 (465)
T ss_dssp TTCCSCCCSBCCBC-SSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSE
T ss_pred ccCCccccceeeec-cCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCe
Confidence 11 11112257787 8999999987 67777888877765433321 122 36779997766
Q ss_pred EEEEcCCCC--------------------------------eeEEEEecCCCeEEEEe-e-----cCCcceeEEEEEecC
Q 011452 248 LIFTKASGH--------------------------------VPLKILSIEDGTVLKSF-N-----HLLHRNKKVDFIEQF 289 (485)
Q Consensus 248 l~sss~~~D--------------------------------~tIklWdi~tG~~L~tl-~-----~~~~~~~~V~f~~~~ 289 (485)
+++...+.. ..+.+.|++++...... . ...+-+..+.|+ ++
T Consensus 187 iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~-~d 265 (465)
T d1xfda1 187 LAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA-TS 265 (465)
T ss_dssp EEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-SS
T ss_pred EEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-CC
Confidence 666432110 13456677665432211 1 111224467774 44
Q ss_pred CCEEEEE--e---CCCcEEEEECCCCeeEEecccCC-Cce----EEEEEcCCCcEE--EEEe--CC--cEEEE-------
Q 011452 290 NEKLLVK--Q---ENENLQILDVRNFELTEVSRTEF-MTP----SAFIFLYENQLF--LTFR--NR--TVAVW------- 346 (485)
Q Consensus 290 ~~~lls~--s---~D~tIkIWDv~tg~~~~~l~gh~-~~v----~avaFspdg~ll--aS~s--D~--TIklW------- 346 (485)
+++++. . ....|.++|+.+|++......+. .+| ....|+|||+.+ +..+ ++ .+..-
T Consensus 266 -~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~ 344 (465)
T d1xfda1 266 -TKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQP 344 (465)
T ss_dssp -SEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSC
T ss_pred -CeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccc
Confidence 456554 2 22468889999999877654322 222 345799999853 2222 33 22211
Q ss_pred eCCCcEEEEeecCCCCCCCCCeeEE-EECCCCCEEE
Q 011452 347 NFRGELVTSFEDHLLWHPDCNTNNI-YITSDQDLII 381 (485)
Q Consensus 347 d~~G~ll~tl~gH~~~~~~~~v~sv-afSpDG~~La 381 (485)
+..|+.++.|+ +..|. |..+ +|.++++.|.
T Consensus 345 ~~~~~~~~~LT-~G~w~----V~~i~~~d~~~~~vy 375 (465)
T d1xfda1 345 NSSNDNIQSIT-SGDWD----VTKILAYDEKGNKIY 375 (465)
T ss_dssp CSSSCCCCBSC-CSSSC----EEEEEEEETTTTEEE
T ss_pred cCCCceeEEec-cCCce----EEEEEEEcCCCCEEE
Confidence 12344445554 33452 6665 6889888774
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=3e-06 Score=86.48 Aligned_cols=283 Identities=11% Similarity=0.083 Sum_probs=157.0
Q ss_pred eCCCeEEeeecccCcEEEEeec--CCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCc----c--
Q 011452 112 AQSGVCAAFCRETNQRICFLNV--TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA----G-- 183 (485)
Q Consensus 112 s~dgtiklW~~~tG~~l~tl~g--~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~----~-- 183 (485)
|..+..-++|+.+|+.- .|.. ..+..+....|||||+.||-+.. + .+.+.+...|+..+ +
T Consensus 88 s~~~~~~i~d~~~~~~~-~l~~~~~~~~~l~~~~wSPDG~~iafv~~----~-------nl~~~~~~~~~~~~lt~~g~~ 155 (465)
T d1xfda1 88 SYTGYYVLSKIPHGDPQ-SLDPPEVSNAKLQYAGWGPKGQQLIFIFE----N-------NIYYCAHVGKQAIRVVSTGKE 155 (465)
T ss_dssp CCCSEEEEEESSSCCCE-ECCCTTCCSCCCSBCCBCSSTTCEEEEET----T-------EEEEESSSSSCCEEEECCCBT
T ss_pred eccccEEEEEccCCcee-eccCccCCccccceeeeccCCceEEEEec----c-------eEEEEecCCCceEEEecccCc
Confidence 44577888999987743 2422 13345667889999999998762 2 33333333333210 0
Q ss_pred cceeee--------ccccCceEEEEeCCCCeEEEEeeCC-C---------------------------------cEEEee
Q 011452 184 FALFES--------ESLKWPGFVEFDDVNGKVLTYSAQD-S---------------------------------IYKVFD 221 (485)
Q Consensus 184 ~~lf~~--------~~~~~~~~V~Fs~pnG~~Las~s~D-~---------------------------------tiKlWd 221 (485)
..++.. +.......+-|| |||+.||....| . .+.|+|
T Consensus 156 ~~i~nG~~d~vyeee~~~~~~a~~WS-PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d 234 (465)
T d1xfda1 156 GVIYNGLSDWLYEEEILKTHIAHWWS-PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (465)
T ss_dssp TTEEEEECCHHHHHTTSSSSEEEEEC-TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred ceeeccccchhhhhhhccccceEEEC-CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEe
Confidence 001111 111112356788 899999987532 2 234555
Q ss_pred cCCCeEEEE-Ec-------CCcEEEEEEcCCceEEEEEcC--CCCeeEEEEecCCCeEEEEeecCC-cce----eEEEEE
Q 011452 222 LKNYTMLYS-IS-------DKNVQEIKISPGIMLLIFTKA--SGHVPLKILSIEDGTVLKSFNHLL-HRN----KKVDFI 286 (485)
Q Consensus 222 l~~g~~l~t-l~-------~~~V~~VafSpg~~ll~sss~--~~D~tIklWdi~tG~~L~tl~~~~-~~~----~~V~f~ 286 (485)
++++..... +. +..+..+.++|++.+++.... .....|.++|..+|++...+.... .++ ....|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~ 314 (465)
T d1xfda1 235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFS 314 (465)
T ss_dssp SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEEC
T ss_pred cCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEc
Confidence 554432111 11 123678999998877655322 223578889999999876655321 122 234554
Q ss_pred ecCCCEEEE--Ee-CCC--cEEEEECC------CCeeEEecccCCCceEEE-EEcCCCcEE-EEEe-CC--cEEEEeC--
Q 011452 287 EQFNEKLLV--KQ-ENE--NLQILDVR------NFELTEVSRTEFMTPSAF-IFLYENQLF-LTFR-NR--TVAVWNF-- 348 (485)
Q Consensus 287 ~~~~~~lls--~s-~D~--tIkIWDv~------tg~~~~~l~gh~~~v~av-aFspdg~ll-aS~s-D~--TIklWd~-- 348 (485)
++|..++. .+ .++ .+...++. ++..++.+......|..+ +|..+++.+ .++. +. .-.||-+
T Consensus 315 -~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l 393 (465)
T d1xfda1 315 -KDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANT 393 (465)
T ss_dssp -TTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECS
T ss_pred -cCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEEC
Confidence 66664432 22 332 33333321 233344444344456665 588877655 3444 32 2235544
Q ss_pred CCc-EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 349 RGE-LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 349 ~G~-ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
.|. ..+.++... ...|...++.|||||++++-.|.. ..--.+.|++..+|+.+..|+...
T Consensus 394 ~g~~~~~~lt~~~--~~~~~~~~~~~S~~~~y~v~~~s~--------~~~P~~~~~~~~~~~~~~~Le~N~ 454 (465)
T d1xfda1 394 VGNFNRQCLSCDL--VENCTYFSASFSHSMDFFLLKCEG--------PGVPMVTVHNTTDKKKMFDLETNE 454 (465)
T ss_dssp STTCCCBCSSTTS--SSSCCCCEEEECTTSSEEEEECCS--------SSSCCEEEEETTTCCEEEEEECCH
T ss_pred CCCCcceeecccc--CCCCCEEEEEECCCCCEEEEEeec--------CCCCeEEEEECCCCCEEEEEcCCH
Confidence 333 222222111 123557899999999999966641 123568999999999999998643
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.69 E-value=1.2e-05 Score=72.56 Aligned_cols=234 Identities=8% Similarity=0.007 Sum_probs=128.6
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCccc
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~ 184 (485)
|+.||-.+. |-+-+.++.+|+.. .|.. +...+.+.+|||||+.||.++...+.+ ....+.+.+...|+..
T Consensus 12 G~~v~f~~~-~dl~~~d~~~g~~~-~Lt~-~~~~~~~p~~SPDG~~iaf~~~~~~~~----~~~~i~~~~~~~g~~~--- 81 (281)
T d1k32a2 12 GDRIIFVCC-DDLWEHDLKSGSTR-KIVS-NLGVINNARFFPDGRKIAIRVMRGSSL----NTADLYFYNGENGEIK--- 81 (281)
T ss_dssp TTEEEEEET-TEEEEEETTTCCEE-EEEC-SSSEEEEEEECTTSSEEEEEEEESTTC----CEEEEEEEETTTTEEE---
T ss_pred CCEEEEEeC-CcEEEEECCCCCEE-EEec-CCCcccCEEECCCCCEEEEEEeeCCCC----CceEEEEEEecCCceE---
Confidence 666665544 34555588877654 4655 455789999999999999877544333 1223444454555541
Q ss_pred ceeee-----ccccCceEEEEeCCCCeEEEEeeC------CCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcC
Q 011452 185 ALFES-----ESLKWPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKA 253 (485)
Q Consensus 185 ~lf~~-----~~~~~~~~V~Fs~pnG~~Las~s~------D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~ 253 (485)
.|-.. ........++|+ |||+.|++... ...+.+.+...+.... ........+.+++++..+.....
T Consensus 82 ~lt~~~~~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 159 (281)
T d1k32a2 82 RITYFSGKSTGRRMFTDVAGFD-PDGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLGPATHILFADGRRVIGRNTF 159 (281)
T ss_dssp ECCCCCEEEETTEECSEEEEEC-TTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSCSCSEEEEETTEEEEEESCS
T ss_pred EeeecCCCccCccccccccccC-CCCCEEEEEEccCCCccceeeeeecCCCceeEE-ecCCccceeeecCCCeEEEeecc
Confidence 11111 112234567897 89999998643 3345566665555432 22333334555566666554332
Q ss_pred CCC---------eeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEe-C--CCcEEEEECCCCeeEEecccCCC
Q 011452 254 SGH---------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-E--NENLQILDVRNFELTEVSRTEFM 321 (485)
Q Consensus 254 ~~D---------~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~--D~tIkIWDv~tg~~~~~l~gh~~ 321 (485)
... ....+.....+........ ........+. ++.++... . ...|-++|+.+++..+...+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~ 235 (281)
T d1k32a2 160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDM-STHVSSPVIV---GHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDY 235 (281)
T ss_dssp CCTTSTTCCSTTCCEEEEEEETTEEEEEECC-SSCCEEEEEE---TTEEEEEECTTSSCEEEEEETTSCSCEECCCCCSS
T ss_pred ccceeeeeccCCcceeeeeccccceeeccCC-ccccceeeee---ccccceecccccccceEEEeCCCCceEEeecCCCc
Confidence 211 1222333333333322222 2233333332 34455543 3 34566779998877665433333
Q ss_pred ceEEEEEcCCCcEEEEEeCCcEEEEeCCCcEEEEe
Q 011452 322 TPSAFIFLYENQLFLTFRNRTVAVWNFRGELVTSF 356 (485)
Q Consensus 322 ~v~avaFspdg~llaS~sD~TIklWd~~G~ll~tl 356 (485)
.+ ..|||||+.|+-..++.|.++|+++...+.+
T Consensus 236 ~~--~~~SpDG~~I~f~~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 236 YP--RHLNTDGRRILFSKGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CE--EEEEESSSCEEEEETTEEEEECTTTCCEEEC
T ss_pred cc--ccCcCCCCEEEEEeCCEEEEEECCCCCEEEe
Confidence 33 4589999998865688899999974333333
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.52 E-value=0.00016 Score=68.70 Aligned_cols=214 Identities=10% Similarity=0.049 Sum_probs=140.5
Q ss_pred EEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecCCCeEEEEee--c
Q 011452 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN--H 275 (485)
Q Consensus 198 V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~tG~~L~tl~--~ 275 (485)
..|++.+|.+.-..-..+.|.-||+++++...--....+.++++.+++.++++.. .-|.++|.++|+...-.. .
T Consensus 23 p~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~l~va~~----~gl~~~d~~tg~~~~l~~~~~ 98 (295)
T d2ghsa1 23 PTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASD----DGLFLRDTATGVLTLHAELES 98 (295)
T ss_dssp EEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEEEET----TEEEEEETTTCCEEEEECSST
T ss_pred CeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCEEEEEe----CccEEeecccceeeEEeeeec
Confidence 4455456665555556677888888888753222356788999987666666532 258899999997643222 1
Q ss_pred CC--cceeEEEEEecCCCEEEEEe----CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEE-EEEe-CCcEEEEe
Q 011452 276 LL--HRNKKVDFIEQFNEKLLVKQ----ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVWN 347 (485)
Q Consensus 276 ~~--~~~~~V~f~~~~~~~lls~s----~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~ll-aS~s-D~TIklWd 347 (485)
.. .+...+.+ .++|...++.. ..+.-.+|.+..++..+...+ ...++.++|+|+++.+ ++-+ .+.|..++
T Consensus 99 ~~~~~~~nd~~v-d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~ 176 (295)
T d2ghsa1 99 DLPGNRSNDGRM-HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVP 176 (295)
T ss_dssp TCTTEEEEEEEE-CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred CCCcccceeeEE-CCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEee
Confidence 11 12345554 35554444433 234567888888887776643 4578999999999854 5556 88888888
Q ss_pred CCCc---------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 348 FRGE---------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 348 ~~G~---------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++++ ....+.+-.. ...++++.++|.+.++.-. .+.|..+| .+|+.+..+.--.
T Consensus 177 ~d~~~~~~~~~~~~~~~~~~~~g-----~pdG~~vD~~GnlWva~~~-----------~g~V~~~d-p~G~~~~~i~lP~ 239 (295)
T d2ghsa1 177 LDARTGLPTGKAEVFIDSTGIKG-----GMDGSVCDAEGHIWNARWG-----------EGAVDRYD-TDGNHIARYEVPG 239 (295)
T ss_dssp BCTTTCCBSSCCEEEEECTTSSS-----EEEEEEECTTSCEEEEEET-----------TTEEEEEC-TTCCEEEEEECSC
T ss_pred ecccccccccceEEEeccCcccc-----cccceEEcCCCCEEeeeeC-----------CCceEEec-CCCcEeeEecCCC
Confidence 6421 1112222222 2678999999998887543 47899999 5699999886432
Q ss_pred CCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEc-CCCCEEE
Q 011452 419 GLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYD-EDRNEIY 472 (485)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fs-pDg~~La 472 (485)
..+++++|- ||+++|+
T Consensus 240 --------------------------------------~~~T~~~FGG~d~~~Ly 256 (295)
T d2ghsa1 240 --------------------------------------KQTTCPAFIGPDASRLL 256 (295)
T ss_dssp --------------------------------------SBEEEEEEESTTSCEEE
T ss_pred --------------------------------------CceEEEEEeCCCCCEEE
Confidence 278999995 8988876
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.26 E-value=0.00076 Score=63.76 Aligned_cols=201 Identities=13% Similarity=0.021 Sum_probs=135.3
Q ss_pred eEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEE--c----CCcEEEEEE
Q 011452 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--S----DKNVQEIKI 241 (485)
Q Consensus 168 ~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl--~----~~~V~~Vaf 241 (485)
+.+.-|+...|+. ..|.. -..+.++++. ++|.+++.+ .+ -+.++|.++++...-. . ...++++++
T Consensus 40 ~~I~r~d~~~g~~----~~~~~--~~~~~~i~~~-~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~v 110 (295)
T d2ghsa1 40 RELHELHLASGRK----TVHAL--PFMGSALAKI-SDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRM 110 (295)
T ss_dssp TEEEEEETTTTEE----EEEEC--SSCEEEEEEE-ETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEE
T ss_pred CEEEEEECCCCeE----EEEEC--CCCcEEEEEe-cCCCEEEEE-eC-ccEEeecccceeeEEeeeecCCCcccceeeEE
Confidence 4555667666654 23443 1346688887 688888754 44 4778999998853322 1 136899999
Q ss_pred cCCceEEEEEcCCC--CeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCC--C------
Q 011452 242 SPGIMLLIFTKASG--HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRN--F------ 310 (485)
Q Consensus 242 Spg~~ll~sss~~~--D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~t--g------ 310 (485)
.|+|.+.++..... ...-.+|.+.+|+....+.+. ..-..++|+ +++..+... +..+.|..+++.. +
T Consensus 111 d~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~-~~~Ng~~~s-~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~ 188 (295)
T d2ghsa1 111 HPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI-SIPNSICFS-PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKA 188 (295)
T ss_dssp CTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE-SSEEEEEEC-TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCC
T ss_pred CCCCCEEEEeccccccccceeEeeecCCcEEEEeecc-CCcceeeec-CCCceEEEeecccceeeEeeecccccccccce
Confidence 99777666543211 134567877888876666542 344578886 667777665 5788888887642 1
Q ss_pred eeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCCCcEEEEeecCCCCCCCCCeeEEEEC-CCCCEEEEEe
Q 011452 311 ELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFRGELVTSFEDHLLWHPDCNTNNIYIT-SDQDLIISYC 384 (485)
Q Consensus 311 ~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~G~ll~tl~gH~~~~~~~~v~svafS-pDG~~LaS~s 384 (485)
.....+.+....+..+++..+|.+.++.. .+.|..+|-+|+++..++--... +.+++|- ||.+.|.-.+
T Consensus 189 ~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~~-----~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 189 EVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGKQ-----TTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp EEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCSB-----EEEEEEESTTSCEEEEEE
T ss_pred EEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCCCcEeeEecCCCCc-----eEEEEEeCCCCCEEEEEE
Confidence 11223345566789999999999998887 88899999999999988643222 8899995 7877775433
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.68 E-value=0.021 Score=52.94 Aligned_cols=203 Identities=10% Similarity=-0.009 Sum_probs=132.4
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEcC--CcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~~--~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
+..|+||..++++.-+...++.|+.-++.++.....+.. ..+..||+.. ++.|..+... .+.|.+.++....+..
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~--~~~I~~~~~dg~~~~~ 115 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQ--LDRIEVAKMDGTQRRV 115 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETT--TTEEEEEETTSCSCEE
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccC--CCEEEEEecCCceEEE
Confidence 446899866677777777889999999876554444432 4789999984 7776655443 3689999985444322
Q ss_pred EeecCCcceeEEEEEecCCCEEEEEeCC-CcEEEE--ECCCCeeEEecccCCCceEEEEEcCCCcEE-EEEe-CCcEEEE
Q 011452 272 SFNHLLHRNKKVDFIEQFNEKLLVKQEN-ENLQIL--DVRNFELTEVSRTEFMTPSAFIFLYENQLF-LTFR-NRTVAVW 346 (485)
Q Consensus 272 tl~~~~~~~~~V~f~~~~~~~lls~s~D-~tIkIW--Dv~tg~~~~~l~gh~~~v~avaFspdg~ll-aS~s-D~TIklW 346 (485)
-+.........++.. |..+.+.....+ +.-+|| ++...............+.++++.+.++.| .+-. .++|..-
T Consensus 116 l~~~~l~~p~~l~vd-p~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~ 194 (263)
T d1npea_ 116 LFDTGLVNPRGIVTD-PVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (263)
T ss_dssp EECSSCSSEEEEEEE-TTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EecccccCCcEEEEe-cccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence 233334566788876 556777766432 344555 666544444444445688999998766655 5555 8899999
Q ss_pred eCCCcEEEEe-ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 347 NFRGELVTSF-EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 347 d~~G~ll~tl-~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
|++|.-.+++ .+-. + -.+|++. +.+|--... ..++|..-|..+|+.+.++..+.
T Consensus 195 ~~~g~~~~~v~~~~~--~----P~~lav~--~~~lYwtd~----------~~~~I~~~~~~~g~~~~~~~~~~ 249 (263)
T d1npea_ 195 NPAQPGRRKVLEGLQ--Y----PFAVTSY--GKNLYYTDW----------KTNSVIAMDLAISKEMDTFHPHK 249 (263)
T ss_dssp ETTEEEEEEEEECCC--S----EEEEEEE--TTEEEEEET----------TTTEEEEEETTTTEEEEEECCSS
T ss_pred ECCCCCeEEEECCCC--C----cEEEEEE--CCEEEEEEC----------CCCEEEEEECCCCccceEECCCC
Confidence 9987655443 3322 1 2467764 455544433 25889999999999998876544
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.64 E-value=0.024 Score=58.42 Aligned_cols=140 Identities=11% Similarity=0.009 Sum_probs=86.1
Q ss_pred eEEEEecCCCeEEEEeecCCcceeE-------EEE-EecCCCE---EEEEeCCCcEEEEECCCCeeEEec----------
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKK-------VDF-IEQFNEK---LLVKQENENLQILDVRNFELTEVS---------- 316 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~-------V~f-~~~~~~~---lls~s~D~tIkIWDv~tg~~~~~l---------- 316 (485)
.+--.|++||+++-.++.+.|.++. +-+ .+.+++. ++..+.++.+.+.|..||+.+...
T Consensus 273 svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~ 352 (571)
T d2ad6a1 273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK 352 (571)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred ceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccc
Confidence 5667799999999988854344332 111 1122322 234579999999999999976321
Q ss_pred -------------------------------ccCCCceEEEEEcCCCcEEEEEe-C------------------------
Q 011452 317 -------------------------------RTEFMTPSAFIFLYENQLFLTFR-N------------------------ 340 (485)
Q Consensus 317 -------------------------------~gh~~~v~avaFspdg~llaS~s-D------------------------ 340 (485)
.+|.. ...+|+|+..++.... +
T Consensus 353 ~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w--~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (571)
T d2ad6a1 353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQ--GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA 430 (571)
T ss_dssp EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCS--CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred cccccccccccCcccccccccCceEEEecccccccc--ccceECCCCceEEEeccccccccccccccccCCcccccccee
Confidence 11111 1246777777665432 2
Q ss_pred -------------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCC
Q 011452 341 -------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNIL 406 (485)
Q Consensus 341 -------------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~ 406 (485)
++|.-+|.+ |+.+-...--... ..+.. +-.|.+++.++. ||.++-+|.+
T Consensus 431 ~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~-----~~g~l-~TagglVf~G~~-----------dg~l~A~Da~ 493 (571)
T d2ad6a1 431 MYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAA-----WGGTL-YTKGGLVWYATL-----------DGYLKALDNK 493 (571)
T ss_dssp EEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCC-----CSBCE-EETTTEEEEECT-----------TSEEEEEETT
T ss_pred eccccCCcccCCcccEEEeccCCCceeeEcCCCCCC-----Cccee-EecCCEEEEECC-----------CCeEEEEECC
Confidence 367778885 8877654321111 11222 223557777765 7999999999
Q ss_pred CCeEEEEecC
Q 011452 407 TGKCLAKIRA 416 (485)
Q Consensus 407 TGk~l~tl~g 416 (485)
|||.|..+.-
T Consensus 494 tGe~lW~~~l 503 (571)
T d2ad6a1 494 DGKELWNFKM 503 (571)
T ss_dssp TCCEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 9999987754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.63 E-value=0.027 Score=52.73 Aligned_cols=266 Identities=9% Similarity=-0.028 Sum_probs=133.8
Q ss_pred EEEEEEeeCCCEEEEEEeecCCCC-ccc-ceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCC-C
Q 011452 139 IRSLFYNKNNDSLITVSVYASDNF-SSL-RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-S 215 (485)
Q Consensus 139 i~sv~~spdg~~Las~S~d~~~d~-stL-~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D-~ 215 (485)
+...+...||+.++.++... +.| ... ....+.+||+.+++.... +.....+..+-..+++. +||++++.|+.+ .
T Consensus 22 ~~~a~~~~~gkv~v~GG~~~-~~~~~~~~~~~~~~~yd~~t~~w~~~-~~~~~~~~~~~~~~~~~-~~g~i~v~Gg~~~~ 98 (387)
T d1k3ia3 22 AAAAIEPTSGRVLMWSSYRN-DAFGGSPGGITLTSSWDPSTGIVSDR-TVTVTKHDMFCPGISMD-GNGQIVVTGGNDAK 98 (387)
T ss_dssp SEEEEETTTTEEEEEEECCC-TTTCSCCCSEEEEEEECTTTCCBCCC-EEEECSCCCSSCEEEEC-TTSCEEEECSSSTT
T ss_pred cEEEEEeeCCEEEEEEeecC-cccCCCCCceeEEEEEECCCCcEeec-CCCCCCcccceeEEEEe-cCCcEEEeecCCCc
Confidence 34444556677666655321 111 111 123567899988886431 11222111122256776 799999998765 6
Q ss_pred cEEEeecCCCeEEE--EEc-CCcEEEEEEcCCceEEEEEcCCCC----eeEEEEecCCCeEEEEeec----------CCc
Q 011452 216 IYKVFDLKNYTMLY--SIS-DKNVQEIKISPGIMLLIFTKASGH----VPLKILSIEDGTVLKSFNH----------LLH 278 (485)
Q Consensus 216 tiKlWdl~~g~~l~--tl~-~~~V~~VafSpg~~ll~sss~~~D----~tIklWdi~tG~~L~tl~~----------~~~ 278 (485)
++.+||..+.+-.. .+. ...-...++.+++++++....... ..+.+||+.+.+-.. +.. +..
T Consensus 99 ~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~~~~~~~~~~ 177 (387)
T d1k3ia3 99 KTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTS-LPNAKVNPMLTADKQG 177 (387)
T ss_dssp CEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEE-ETTSCSGGGCCCCTTG
T ss_pred ceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceee-cCCCcccccccccccc
Confidence 89999998876432 111 123345666666666655432221 468999998876432 210 000
Q ss_pred ----ceeEEEEEecCCCEEEEEeCCCcEEEEECCCCeeEEec--c-c---CC--CceEEEEE-cCCCcEEEEEe--CC--
Q 011452 279 ----RNKKVDFIEQFNEKLLVKQENENLQILDVRNFELTEVS--R-T---EF--MTPSAFIF-LYENQLFLTFR--NR-- 341 (485)
Q Consensus 279 ----~~~~V~f~~~~~~~lls~s~D~tIkIWDv~tg~~~~~l--~-g---h~--~~v~avaF-spdg~llaS~s--D~-- 341 (485)
......|..+++..+..++.+..+.+.|..+....... . . +. ..-.++.+ ..++++++-+. +.
T Consensus 178 ~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~ 257 (387)
T d1k3ia3 178 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD 257 (387)
T ss_dssp GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred eeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCC
Confidence 01123343344555555667777778888776643321 0 0 11 01122333 45677777665 21
Q ss_pred -----cEEEEeC---C-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeE
Q 011452 342 -----TVAVWNF---R-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKC 410 (485)
Q Consensus 342 -----TIklWd~---~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~ 410 (485)
...+.++ . ..-..+... ....+.. -.+.+..|||++++.|+.+............++.+||..+++-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~r~-~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W 333 (387)
T d1k3ia3 258 SDATTNAHIITLGEPGTSPNTVFASN-GLYFART-FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF 333 (387)
T ss_dssp SBCCCCEEEEECCSTTSCCEEEECTT-CCSSCCB-SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE
T ss_pred CcccceeecccccccccCCCceeecc-ccccccc-cceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeE
Confidence 2223332 1 111111111 1111111 1356667999999998863211100001123688999988754
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.57 E-value=0.031 Score=54.85 Aligned_cols=248 Identities=12% Similarity=0.123 Sum_probs=135.2
Q ss_pred CcccEEEEEEeeCCCEEEE-EEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeC
Q 011452 135 ADEVIRSLFYNKNNDSLIT-VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQ 213 (485)
Q Consensus 135 ~~~~i~sv~~spdg~~Las-~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~ 213 (485)
+.-.+-.+.+||||+.||. .|..|++. .++++.|+.+|+.... .+.. . ...+++|+ +|++.|.+...
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~------~~l~v~Dl~tg~~~~~--~i~~--~-~~~~~~W~-~D~~~~~Y~~~ 190 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDW------VTIKFMKVDGAKELPD--VLER--V-KFSCMAWT-HDGKGMFYNAY 190 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSC------EEEEEEETTTTEEEEE--EEEE--E-CSCCEEEC-TTSSEEEEEEC
T ss_pred ccceecceEecCCCCEEEEEeccccCch------heeEEeccCcceeccc--cccc--c-cccceEEc-CCCCEEEEEEe
Confidence 3334566788999999884 45556666 7889999999986220 1111 1 12478897 79999887654
Q ss_pred CC----------------cEEEeecCCCe----EEEEEcC--CcEEEEEEcCCc-eEEEEEcCCCCeeEEEE--ecCCCe
Q 011452 214 DS----------------IYKVFDLKNYT----MLYSISD--KNVQEIKISPGI-MLLIFTKASGHVPLKIL--SIEDGT 268 (485)
Q Consensus 214 D~----------------tiKlWdl~~g~----~l~tl~~--~~V~~VafSpg~-~ll~sss~~~D~tIklW--di~tG~ 268 (485)
|. .|.+|.+.+.. +++.-.+ ..+..+..|+++ .+++......+.+..+| |+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~ 270 (430)
T d1qfma1 191 PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (430)
T ss_dssp CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred ccccCcccccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcc
Confidence 42 47777776543 4454443 357788889654 44444333333444555 433211
Q ss_pred --------EEEEeecCCcceeEEEEEecCCCEEEE-Ee---CCCcEEEEECCCCee---EEecccCCCceEEEEEcCCC-
Q 011452 269 --------VLKSFNHLLHRNKKVDFIEQFNEKLLV-KQ---ENENLQILDVRNFEL---TEVSRTEFMTPSAFIFLYEN- 332 (485)
Q Consensus 269 --------~L~tl~~~~~~~~~V~f~~~~~~~lls-~s---~D~tIkIWDv~tg~~---~~~l~gh~~~v~avaFspdg- 332 (485)
....+.. ....+.+....++.+.+ +. .++.|-.-++.+... ..++..+...+..-.++..+
T Consensus 271 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~ 347 (430)
T d1qfma1 271 NGITGILKWVKLIDN---FEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN 347 (430)
T ss_dssp SSSCSSCCCEEEECS---SSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTT
T ss_pred cccccccceeEeecc---cccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECC
Confidence 1111221 11122222234555554 32 345666667665432 33444455455554555544
Q ss_pred cEEEEEe-CC--cEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 333 QLFLTFR-NR--TVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQD-LIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 333 ~llaS~s-D~--TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
.++++-. |+ .|++++.+ |+....+..- ...|..+...++.. +.++++. .-.=.++--+|+.|
T Consensus 348 ~lvl~~~~~~~~~l~v~~~~~~~~~~~~~~~-----~~sv~~~~~~~~~~~~~~~~ss--------~~tP~~~y~~Dl~t 414 (430)
T d1qfma1 348 FLVLCYLHDVKNTLQLHDLATGALLKIFPLE-----VGSVVGYSGQKKDTEIFYQFTS--------FLSPGIIYHCDLTK 414 (430)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEEEECCC-----SSEEEEEECCTTCSEEEEEEEC--------SSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEeEEEEEECCCCcEEEecCCC-----CceEeeccCCCCCCEEEEEEcC--------CCCCCeEEEEECCC
Confidence 4555655 65 68889997 5544332211 12255555555554 4444442 11236888999999
Q ss_pred CeE
Q 011452 408 GKC 410 (485)
Q Consensus 408 Gk~ 410 (485)
|+.
T Consensus 415 ~~~ 417 (430)
T d1qfma1 415 EEL 417 (430)
T ss_dssp SSC
T ss_pred CCc
Confidence 863
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.50 E-value=0.038 Score=56.65 Aligned_cols=143 Identities=13% Similarity=0.145 Sum_probs=89.9
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEE-------E-EecCCC--E-EEEEeCCCcEEEEECCCCeeEEeccc-CCCce--
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVD-------F-IEQFNE--K-LLVKQENENLQILDVRNFELTEVSRT-EFMTP-- 323 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~-------f-~~~~~~--~-lls~s~D~tIkIWDv~tg~~~~~l~g-h~~~v-- 323 (485)
.|--.|+.||+..-.++...|-++..+ + +..+++ . ++..+.++.+-++|-.||+++....- ...+.
T Consensus 271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~ 350 (560)
T d1kv9a2 271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (560)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccc
Confidence 456669999999988875444443211 1 122232 2 33457999999999999998643211 10000
Q ss_pred ---------------------------------EEEEEcCCCcEEEEEe-C-----------------------------
Q 011452 324 ---------------------------------SAFIFLYENQLFLTFR-N----------------------------- 340 (485)
Q Consensus 324 ---------------------------------~avaFspdg~llaS~s-D----------------------------- 340 (485)
...++.|+..++..-. +
T Consensus 351 ~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (560)
T d1kv9a2 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATD 430 (560)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCC
T ss_pred cChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccC
Confidence 1345777777666433 2
Q ss_pred -------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEE
Q 011452 341 -------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLA 412 (485)
Q Consensus 341 -------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~ 412 (485)
+.|.-||+. |+.+-...--... .+=.++-.|.++..++. ||.++-+|..|||.|.
T Consensus 431 ~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~------~gg~l~TagglVF~G~~-----------dg~l~A~Da~tGe~LW 493 (560)
T d1kv9a2 431 VPAAVVSGALLAWDPVKQKAAWKVPYPTHW------NGGTLSTAGNLVFQGTA-----------AGQMHAYSADKGEALW 493 (560)
T ss_dssp CCGGGCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEETTTCCEEE
T ss_pred CCCcccccceEEEeCCCCeEeeeccCCCCC------CCceeEECCCEEEEECC-----------CCcEEEEECCCCcEeE
Confidence 467889985 9887765432211 12223345668887776 7999999999999998
Q ss_pred EecCC
Q 011452 413 KIRAS 417 (485)
Q Consensus 413 tl~gH 417 (485)
+++-.
T Consensus 494 ~~~l~ 498 (560)
T d1kv9a2 494 QFEAQ 498 (560)
T ss_dssp EEECS
T ss_pred EEECC
Confidence 88653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.46 E-value=0.067 Score=54.80 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=89.3
Q ss_pred eEEEEecCCCeEEEEeecCCcceeEEEE--------EecCCC---EEEEEeCCCcEEEEECCCCeeEEecc---------
Q 011452 258 PLKILSIEDGTVLKSFNHLLHRNKKVDF--------IEQFNE---KLLVKQENENLQILDVRNFELTEVSR--------- 317 (485)
Q Consensus 258 tIklWdi~tG~~L~tl~~~~~~~~~V~f--------~~~~~~---~lls~s~D~tIkIWDv~tg~~~~~l~--------- 317 (485)
.|--.|+++|+..-.++...+.++..+. ...++. .++..+.++.+.++|..||+.+-...
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~ 363 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence 4555788999998877643344332211 112221 23445799999999999999865321
Q ss_pred ---------------------------cCCCceEEEEEcCCCcEEEEEe-C-----------------------------
Q 011452 318 ---------------------------TEFMTPSAFIFLYENQLFLTFR-N----------------------------- 340 (485)
Q Consensus 318 ---------------------------gh~~~v~avaFspdg~llaS~s-D----------------------------- 340 (485)
|...+. ..+|.|+..++..-. +
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~-~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 442 (573)
T d1kb0a2 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWH-PMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (573)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSS-CCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred cccccceeeeeeccccccceEEeecccCCcccc-ccccCCCcceEEeeccccceeeecccccccccCCCCcccccccccc
Confidence 111111 246777766655422 2
Q ss_pred --------------CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeC
Q 011452 341 --------------RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNI 405 (485)
Q Consensus 341 --------------~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl 405 (485)
++|.-||+. ||.+-+.+....+ ++=.++-.|.+|..++. ||.++.+|.
T Consensus 443 ~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~------~gg~lstagglVF~G~~-----------dg~l~A~Da 505 (573)
T d1kb0a2 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPW------NGGTLTTAGNVVFQGTA-----------DGRLVAYHA 505 (573)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSC------CCCEEEETTTEEEEECT-----------TSEEEEEET
T ss_pred ccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCC------CCceEEEcCCEEEEECC-----------CCeEEEEEC
Confidence 357778885 8888777654432 11123346778888776 799999999
Q ss_pred CCCeEEEEecC
Q 011452 406 LTGKCLAKIRA 416 (485)
Q Consensus 406 ~TGk~l~tl~g 416 (485)
.||+.|.++.-
T Consensus 506 ~TGe~LW~~~~ 516 (573)
T d1kb0a2 506 ATGEKLWEAPT 516 (573)
T ss_dssp TTCCEEEEEEC
T ss_pred CCCcEeEEEEC
Confidence 99999988754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.25 E-value=0.14 Score=52.30 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=44.5
Q ss_pred CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecC
Q 011452 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRA 416 (485)
Q Consensus 341 ~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~g 416 (485)
++|.-+|+. ||++-....+... .+=.++..|.++..|+. ||.++-+|..|||+|..++-
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~------~~g~lstagglVF~Gt~-----------dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPL------WAGVLATAGNLVFTGTG-----------DGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCC------CSCCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCCCC------ccceeEEcCCeEEEeCC-----------CCeEEEEECCCCcEeEEEEC
Confidence 578889985 9998887765432 22223456778888876 79999999999999988864
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.12 E-value=0.076 Score=49.46 Aligned_cols=181 Identities=8% Similarity=0.043 Sum_probs=101.3
Q ss_pred CCCCeEEEEeeCCC-----------cEEEeecCCCeEE--EEE---cCCcEEEEEEcCCceEEEEEcCCCCeeEEEEecC
Q 011452 202 DVNGKVLTYSAQDS-----------IYKVFDLKNYTML--YSI---SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (485)
Q Consensus 202 ~pnG~~Las~s~D~-----------tiKlWdl~~g~~l--~tl---~~~~V~~VafSpg~~ll~sss~~~D~tIklWdi~ 265 (485)
+.|||+++.|+.+. .+-+||+++++-. -.. +......+++.+++++++.+..+ ..++.+||..
T Consensus 28 ~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~-~~~~~~yd~~ 106 (387)
T d1k3ia3 28 PTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-AKKTSLYDSS 106 (387)
T ss_dssp TTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS-TTCEEEEEGG
T ss_pred eeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC-CcceeEecCc
Confidence 56899999988431 3679999987632 122 12234466788888887775443 3689999998
Q ss_pred CCeEEEEeecCCccee-EEEEEecCCCEEEEEeCC------CcEEEEECCCCeeEEeccc---------CC-----CceE
Q 011452 266 DGTVLKSFNHLLHRNK-KVDFIEQFNEKLLVKQEN------ENLQILDVRNFELTEVSRT---------EF-----MTPS 324 (485)
Q Consensus 266 tG~~L~tl~~~~~~~~-~V~f~~~~~~~lls~s~D------~tIkIWDv~tg~~~~~l~g---------h~-----~~v~ 324 (485)
+++-...-.-...+.. .++.. +++..++.++.+ .++.+||..+.+-...... +. ..-.
T Consensus 107 ~~~w~~~~~~~~~r~~~~~~~~-~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (387)
T d1k3ia3 107 SDSWIPGPDMQVARGYQSSATM-SDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHA 185 (387)
T ss_dssp GTEEEECCCCSSCCSSCEEEEC-TTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSC
T ss_pred cCcccccccccccccccceeee-cCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeecccee
Confidence 8776432111111211 34433 556666666522 5799999999875443211 10 0011
Q ss_pred EEEEcCCCcEEEEEe-CCcEEEEeCC-CcEE--EEeecCCCCCC--CCCeeEEEE-CCCCCEEEEEec
Q 011452 325 AFIFLYENQLFLTFR-NRTVAVWNFR-GELV--TSFEDHLLWHP--DCNTNNIYI-TSDQDLIISYCK 385 (485)
Q Consensus 325 avaFspdg~llaS~s-D~TIklWd~~-G~ll--~tl~gH~~~~~--~~~v~svaf-SpDG~~LaS~s~ 385 (485)
-+...++|++++.+. +..+.+.|.. .... ..+.......+ .+. .++.+ ..+|++++.|..
T Consensus 186 ~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~v~v~GG~ 252 (387)
T d1k3ia3 186 WLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCG-NAVMYDAVKGKILTFGGS 252 (387)
T ss_dssp CEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTC-EEEEEETTTTEEEEECCB
T ss_pred EEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccc-cEEEeeccCCceEEEEec
Confidence 123467888888877 7777777764 3321 11221111100 111 23333 457888888775
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.01 E-value=0.2 Score=50.37 Aligned_cols=268 Identities=13% Similarity=0.095 Sum_probs=153.4
Q ss_pred EEEEeCCCeEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccce-------eEEEEeEeccCCc
Q 011452 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC-------RSTRIEYIRRGKP 180 (485)
Q Consensus 108 ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~-------~t~~lw~i~~G~~ 180 (485)
+.|++++|.++++-+.+++.|..+.- |+|+-- + .+|=++ .++++ .|-..-. .+|.
T Consensus 16 f~SgG~sG~v~v~G~PSmR~l~~ipv----------F~~~~~---~--G~G~~~-es~~il~~~~~~~t~~~l~-~~g~- 77 (459)
T d1fwxa2 16 FWSSGQSGEMRILGIPSMRELMRVPV----------FNRCSA---T--GWGQTN-ESVRIHERTMSERTKKFLA-ANGK- 77 (459)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEES----------SSCCTT---T--CTTTBH-HHHHHHHTTCC--------------
T ss_pred EeeCCccceEEEEecCCcceEEEeee----------ecCCCC---c--ccCcch-hHHHHhhcccChhhhhhhh-ccCc-
Confidence 67899999999999999999987754 344321 0 112111 00000 0000000 0111
Q ss_pred CcccceeeeccccCceEEEEeC--CCCeEEEEe-eCCCcEEEeecCCCeEEE--EEc-CCcEEEEEEc--CCceEEEEEc
Q 011452 181 DAGFALFESESLKWPGFVEFDD--VNGKVLTYS-AQDSIYKVFDLKNYTMLY--SIS-DKNVQEIKIS--PGIMLLIFTK 252 (485)
Q Consensus 181 ~~~~~lf~~~~~~~~~~V~Fs~--pnG~~Las~-s~D~tiKlWdl~~g~~l~--tl~-~~~V~~VafS--pg~~ll~sss 252 (485)
..+..+...|| .++|.+ +||++|-.. ..+..|-+=|+++.++.. +++ ...+..+..+ |..-.++..+
T Consensus 78 ----~~~~~GD~HHP-~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~ 152 (459)
T d1fwxa2 78 ----RIHDNGDLHHV-HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNG 152 (459)
T ss_dssp ------CCCCCBCCE-EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEE
T ss_pred ----ccccCCCcCCC-cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccC
Confidence 12222334566 666642 368876554 468889999999999865 444 4567777776 3333333322
Q ss_pred CC----------------CCeeEEEEecCCCeEEEEeecCCcceeEEEEEecCCCEEEEEeCC-----------------
Q 011452 253 AS----------------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN----------------- 299 (485)
Q Consensus 253 ~~----------------~D~tIklWdi~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s~D----------------- 299 (485)
.. ...++-..|.++.+......-- +....++++ ++|..+.+.+++
T Consensus 153 e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~-g~ld~~~~s-~dGK~af~TsyNSE~g~~l~e~ta~e~D~ 230 (459)
T d1fwxa2 153 EDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-GNLDNCDAD-YEGKWAFSTSYNSEKGMTLPEMTAAEMDH 230 (459)
T ss_dssp CSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEES-SCCCCEEEC-SSSSEEEEEESCTTCCSSHHHHTCCSEEE
T ss_pred ccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeC-CChhccccC-CCCCEEEEEeccccCCcchhhcccccceE
Confidence 21 1134667899999887665521 233467775 677777777643
Q ss_pred ---------------------CcEEEEECCCC---eeEEecccCCCceEEEEEcCCCcEEEEEe--CCcEEEEeCC--Cc
Q 011452 300 ---------------------ENLQILDVRNF---ELTEVSRTEFMTPSAFIFLYENQLFLTFR--NRTVAVWNFR--GE 351 (485)
Q Consensus 300 ---------------------~tIkIWDv~tg---~~~~~l~gh~~~v~avaFspdg~llaS~s--D~TIklWd~~--G~ 351 (485)
+-+++-|.++. ..+..+.. ...+..+.++|||++++.++ +.|+-+.|++ -+
T Consensus 231 i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPV-pKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~ 309 (459)
T d1fwxa2 231 IVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDA 309 (459)
T ss_dssp EEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHH
T ss_pred EEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEec-CCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhh
Confidence 34577777642 22222211 12466788999999999887 9999999974 11
Q ss_pred -----------EEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC----------eE
Q 011452 352 -----------LVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG----------KC 410 (485)
Q Consensus 352 -----------ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG----------k~ 410 (485)
.+...+--. + =.-.+|..+|. .-+.-. -|..|--||+... ..
T Consensus 310 ~~~~~~~~~~~~~~e~elgl-----g-PLht~fd~~g~-aytslf----------ids~v~kw~~~~~~~~~~~~~~~~v 372 (459)
T d1fwxa2 310 VFYENADPRSAVVAEPELGL-----G-PLHTAFDGRGN-AYTSLF----------LDSQVVKWNIEDAIRAYAGEKVDPI 372 (459)
T ss_dssp HHHSCC-GGGGEEECCBCCS-----C-EEEEEECTTSE-EEEEET----------TTTEEEEEEHHHHHHHHHTCSCCCE
T ss_pred hhcccCCccccEEeecccCc-----C-ccccccCCCce-EEEEee----------ccceEEEEecchhhhhhccccCCcc
Confidence 111111111 1 13467777774 333333 2688999998543 56
Q ss_pred EEEecCCC
Q 011452 411 LAKIRASN 418 (485)
Q Consensus 411 l~tl~gH~ 418 (485)
+.++.-|-
T Consensus 373 ~~k~~v~y 380 (459)
T d1fwxa2 373 KDKLDVHY 380 (459)
T ss_dssp EEEEECSS
T ss_pred eecccccc
Confidence 77775554
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.89 E-value=0.16 Score=46.64 Aligned_cols=229 Identities=11% Similarity=0.073 Sum_probs=140.6
Q ss_pred eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCc-CcccceeeeccccC
Q 011452 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP-DAGFALFESESLKW 194 (485)
Q Consensus 116 tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~-~~~~~lf~~~~~~~ 194 (485)
.|+-.++.+.+... +.. .-..+.+|.|.+.++.|--+ |...+ .+.--++ .|.- .......-...+..
T Consensus 11 ~I~~~~l~~~~~~~-~~~-~~~~~~~id~d~~~~~lYw~--D~~~~-------~I~~~~l-~~~~~~~~~~~~~~~~~~~ 78 (266)
T d1ijqa1 11 EVRKMTLDRSEYTS-LIP-NLRNVVALDTEVASNRIYWS--DLSQR-------MICSTQL-DRAHGVSSYDTVISRDIQA 78 (266)
T ss_dssp SEEEEETTSCCCEE-EEC-SCSSEEEEEEETTTTEEEEE--ETTTT-------EEEEEEC---------CEEEECSSCSC
T ss_pred eEEEEECCCCccee-eeC-CCCceEEEEEEeCCCEEEEE--ECCCC-------EEEEEEe-cCCCCCcceEEEEeCCCCC
Confidence 36777887555433 333 23357799999999887652 22222 2222222 1110 00011122223566
Q ss_pred ceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEEecCCCeEEE
Q 011452 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLK 271 (485)
Q Consensus 195 ~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklWdi~tG~~L~ 271 (485)
|..+++|...+.+-.+.+..++|.+.++........+. .....++++.| .+.+..+... ....|.--++ +|....
T Consensus 79 p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~-~~~~I~r~~~-dGs~~~ 156 (266)
T d1ijqa1 79 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGL-NGVDIY 156 (266)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS-SSCEEEEEET-TSCCEE
T ss_pred cceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC-CCcceeEecc-CCCcee
Confidence 78899997788888877888999999997665444343 35789999997 6666655432 2234555555 555555
Q ss_pred Eee-cCCcceeEEEEEecCCCEEEEE-eCCCcEEEEECCCCeeEEec--ccCCCceEEEEEcCCCcEEEEEe-CCcEEEE
Q 011452 272 SFN-HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRNFELTEVS--RTEFMTPSAFIFLYENQLFLTFR-NRTVAVW 346 (485)
Q Consensus 272 tl~-~~~~~~~~V~f~~~~~~~lls~-s~D~tIkIWDv~tg~~~~~l--~gh~~~v~avaFspdg~llaS~s-D~TIklW 346 (485)
++- ........+++. +.+++|... +..++|..-|+......... ..+...+.++++. ++.++.+-. ++.|.-.
T Consensus 157 ~l~~~~~~~p~gl~iD-~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~ 234 (266)
T d1ijqa1 157 SLVTENIQWPNGITLD-LLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA 234 (266)
T ss_dssp EEECSSCSCEEEEEEE-TTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred cccccccceeeEEEee-ccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEE
Confidence 553 223344567764 557778777 57889999999865544433 3334567888876 678888877 8888888
Q ss_pred eCC-CcEEEEeecCC
Q 011452 347 NFR-GELVTSFEDHL 360 (485)
Q Consensus 347 d~~-G~ll~tl~gH~ 360 (485)
|.. |+.++.+....
T Consensus 235 ~~~~g~~~~~~~~~~ 249 (266)
T d1ijqa1 235 NRLTGSDVNLLAENL 249 (266)
T ss_dssp ETTTCCCCEEEECSC
T ss_pred ECCCCcceEEEEcCC
Confidence 874 77666665543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.64 E-value=0.25 Score=45.34 Aligned_cols=218 Identities=17% Similarity=0.113 Sum_probs=137.4
Q ss_pred ccEEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEeccCCcCcccceeeeccccCceEEEEeCCCCeEEEEeeCCCc
Q 011452 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (485)
Q Consensus 137 ~~i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~~G~~~~~~~lf~~~~~~~~~~V~Fs~pnG~~Las~s~D~t 216 (485)
..+..|+|.+.++.|.-+. ...+ .|..-++ .|... ..+.. ..+..|..+++|..++++-.+....+.
T Consensus 36 ~~~~~ld~D~~~~~iywsd--~~~~-------~I~~~~l-~g~~~--~~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~~ 102 (263)
T d1npea_ 36 KVIIGLAFDCVDKVVYWTD--ISEP-------SIGRASL-HGGEP--TTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDR 102 (263)
T ss_dssp EEEEEEEEETTTTEEEEEE--TTTT-------EEEEEES-SSCCC--EEEEC-TTCCCEEEEEEETTTTEEEEEETTTTE
T ss_pred CcEEEEEEEeCCCEEEEEE--CCCC-------eEEEEEc-ccCCc--EEEEE-eccccccEEEEeccCCeEEEeccCCCE
Confidence 3578899999988886532 3233 4443343 33321 12222 234567889999777877777778899
Q ss_pred EEEeecCCCeEEEEEc--CCcEEEEEEcC-CceEEEEEcCCCCeeEEEE--ecCCCeEEEEee-cCCcceeEEEEEecCC
Q 011452 217 YKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKIL--SIEDGTVLKSFN-HLLHRNKKVDFIEQFN 290 (485)
Q Consensus 217 iKlWdl~~g~~l~tl~--~~~V~~VafSp-g~~ll~sss~~~D~tIklW--di~tG~~L~tl~-~~~~~~~~V~f~~~~~ 290 (485)
|.+.++....+...+. -....++++.| .+++..+.... ...+|+ ++ +|+....+. .....-..+++. +.+
T Consensus 103 I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~-dG~~~~~i~~~~~~~P~glaiD-~~~ 178 (263)
T d1npea_ 103 IEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHM-DGTNRRILAQDNLGLPNGLTFD-AFS 178 (263)
T ss_dssp EEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS--SSCEEEEEET-TSCCCEEEECTTCSCEEEEEEE-TTT
T ss_pred EEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC--CCcEEEEecC-CCCCceeeeeecccccceEEEe-ecC
Confidence 9999987554322222 25789999997 66666554332 233455 44 454434433 222334567764 456
Q ss_pred CEEEEE-eCCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCC
Q 011452 291 EKLLVK-QENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCN 367 (485)
Q Consensus 291 ~~lls~-s~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~ 367 (485)
++|... ...++|..-|+.......++.+- ..+.++++. ++.++.|-. +++|..-|.. |+.++++-.+....
T Consensus 179 ~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~---- 252 (263)
T d1npea_ 179 SQLCWVDAGTHRAECLNPAQPGRRKVLEGL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR---- 252 (263)
T ss_dssp TEEEEEETTTTEEEEEETTEEEEEEEEECC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCeEEEECCC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEECCCCCCC----
Confidence 777666 57889999999876665555543 357788874 788888887 8899999996 88777664333221
Q ss_pred eeEEEECCCC
Q 011452 368 TNNIYITSDQ 377 (485)
Q Consensus 368 v~svafSpDG 377 (485)
..+|++.+++
T Consensus 253 ~~gi~v~~~~ 262 (263)
T d1npea_ 253 LYGITIALSQ 262 (263)
T ss_dssp CCCEEEECSC
T ss_pred cceEEEeCCC
Confidence 4467766654
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.61 E-value=0.044 Score=52.91 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=61.1
Q ss_pred CCCcEEEEECCCC--ee--EEecc-cCCCceEEEEEcCCCcEEEEE--e--C------------CcEEEEeCCCcEEEEe
Q 011452 298 ENENLQILDVRNF--EL--TEVSR-TEFMTPSAFIFLYENQLFLTF--R--N------------RTVAVWNFRGELVTSF 356 (485)
Q Consensus 298 ~D~tIkIWDv~tg--~~--~~~l~-gh~~~v~avaFspdg~llaS~--s--D------------~TIklWd~~G~ll~tl 356 (485)
..++|.|+++... ++ +.+.. .....++.|++..+|..++|- . + .+..+|..+++..+.+
T Consensus 122 ~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~~~~ 201 (340)
T d1v04a_ 122 SSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVV 201 (340)
T ss_dssp TCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCEEEE
T ss_pred CCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCceEEE
Confidence 3456666655422 22 22222 234578999999999999982 1 1 3567787774444444
Q ss_pred ecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCC
Q 011452 357 EDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTG 408 (485)
Q Consensus 357 ~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TG 408 (485)
...... -|.|++|||+++|.-+.. ..+.|+.+++...
T Consensus 202 ~~~l~~-----pNGI~~s~d~~~lyVa~t----------~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 202 AEGFDF-----ANGINISPDGKYVYIAEL----------LAHKIHVYEKHAN 238 (340)
T ss_dssp EEEESS-----EEEEEECTTSSEEEEEEG----------GGTEEEEEEECTT
T ss_pred cCCCCc-----cceeEECCCCCEEEEEeC----------CCCeEEEEEeCCC
Confidence 333334 699999999988766543 2688999988643
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.20 E-value=0.81 Score=46.50 Aligned_cols=80 Identities=9% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
++|.-+|+.||+.+-....-....... .+-.+.++..++ |+.++-+|.+ ||.|-.++--..- .-.-+.|..||
T Consensus 444 G~l~AiD~~TG~~~W~~~~~~~~~~g~-l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~----~a~P~ty~~dG 518 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEKFAAWGGT-LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGG----IGSPMTYSFKG 518 (571)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBC-EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC----CSCCEEEEETT
T ss_pred ccEEEeccCCCceeeEcCCCCCCCcce-eEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCc----eecceEEEECC
Confidence 578899999999865432111111111 232455666688 9999999996 9999776522211 01235566688
Q ss_pred -CEEEEEe
Q 011452 378 -DLIISYC 384 (485)
Q Consensus 378 -~~LaS~s 384 (485)
|||+..+
T Consensus 519 kqYi~v~~ 526 (571)
T d2ad6a1 519 KQYIGSMY 526 (571)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 4665544
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=96.12 E-value=0.92 Score=46.41 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=41.5
Q ss_pred CcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCC
Q 011452 341 RTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRAS 417 (485)
Q Consensus 341 ~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH 417 (485)
++|.-||.. ||++-...--.. .++=.++-.|.++..|+. ||.++-.|..|||.|..+.--
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~------~~gg~lsTagglVF~G~~-----------Dg~l~A~Da~TGe~LW~~~~~ 513 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFA------VWGGTMATAGDLVFYGTL-----------DGYLKARDSDTGDLLWKFKIP 513 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSC------CCSBCEEETTTEEEEECT-----------TSEEEEEETTTCCEEEEEECS
T ss_pred ceEEEEeCCCCceecccCCCCC------CccceeEecCCEEEEECC-----------CCeEEEEECCCCcEeeEEECC
Confidence 468888985 888765432211 122223446778887776 799999999999999888543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=95.70 E-value=0.074 Score=53.69 Aligned_cols=168 Identities=11% Similarity=0.133 Sum_probs=101.3
Q ss_pred cEEEeecCCCeEEEEEc-CCcEEEEEEcCCceEEEEEcCCCC------------------------------------ee
Q 011452 216 IYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGH------------------------------------VP 258 (485)
Q Consensus 216 tiKlWdl~~g~~l~tl~-~~~V~~VafSpg~~ll~sss~~~D------------------------------------~t 258 (485)
++-+.|.++.+....+. +.+...++++|++.++.+.+-... +-
T Consensus 174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eing 253 (459)
T d1fwxa2 174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG 253 (459)
T ss_dssp EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCC
Confidence 46678888888766654 456678999986666666543211 22
Q ss_pred EEEEecCCC---eEEEEeecCCcceeEEEEEecCCCEEEEEe-CCCcEEEEECCCC-----------eeEEecccCCCce
Q 011452 259 LKILSIEDG---TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRNF-----------ELTEVSRTEFMTP 323 (485)
Q Consensus 259 IklWdi~tG---~~L~tl~~~~~~~~~V~f~~~~~~~lls~s-~D~tIkIWDv~tg-----------~~~~~l~gh~~~v 323 (485)
+++-|..+. ..++.+.-. ..-..|+++ |||.++++++ .+.|+-+.|++.- .++..-....-.+
T Consensus 254 V~VVD~~~~~~~~v~~yIPVp-KsPHGV~vS-PDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgP 331 (459)
T d1fwxa2 254 VKVVDGRKEASSLFTRYIPIA-NNPHGCNMA-PDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGP 331 (459)
T ss_dssp EEEEECSGG--CSSEEEEEEE-SSCCCEEEC-TTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCE
T ss_pred ceeecccccCCcceeEEEecC-CCCCceEEC-CCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCc
Confidence 355554431 233333310 112356764 8899999886 9999999999631 1111111223356
Q ss_pred EEEEEcCCCcEEEEEe-CCcEEEEeCC-C----------cEEEEeecCCCCCCCCCeeEEEECCCCCEEEEEec
Q 011452 324 SAFIFLYENQLFLTFR-NRTVAVWNFR-G----------ELVTSFEDHLLWHPDCNTNNIYITSDQDLIISYCK 385 (485)
Q Consensus 324 ~avaFspdg~llaS~s-D~TIklWd~~-G----------~ll~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~ 385 (485)
---+|...|.-..|-- |.+|--||++ . ..+..+.-|-..-..+...+-...|||++|++.++
T Consensus 332 Lht~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk~l~~~nk 405 (459)
T d1fwxa2 332 LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 405 (459)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred cccccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCCEEEEecc
Confidence 6678999998777766 9999999973 2 45556654432100000000123799999999986
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=95.55 E-value=0.97 Score=43.71 Aligned_cols=195 Identities=13% Similarity=0.166 Sum_probs=111.4
Q ss_pred CeEEEEeeCCCcEEEeecCCCeEEEEEcCCcEEEEEEc------CCce-EEE-EEcCCCCeeEEEEecC-CCeEEEEeec
Q 011452 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS------PGIM-LLI-FTKASGHVPLKILSIE-DGTVLKSFNH 275 (485)
Q Consensus 205 G~~Las~s~D~tiKlWdl~~g~~l~tl~~~~V~~VafS------pg~~-ll~-sss~~~D~tIklWdi~-tG~~L~tl~~ 275 (485)
..++......+=+.++|| +|+.+..+....++.|..- .... +++ +...+.-.+|.+|.+. .+..+..+..
T Consensus 40 ~SlI~gTdK~~Gl~vYdL-~G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~ 118 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSL-EGKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD 118 (353)
T ss_dssp GCEEEEEETTSCCEEEET-TCCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred ccEEEEEcCcCCEEEEcC-CCcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence 334433344555899998 4888888875555554433 2222 333 3222223588899874 3345555542
Q ss_pred C-------CcceeEEEEE-ecC-CCE-EEEEeCCCcEEEEEC---CCC----eeEEecccCCCceEEEEEcCCCcEEEEE
Q 011452 276 L-------LHRNKKVDFI-EQF-NEK-LLVKQENENLQILDV---RNF----ELTEVSRTEFMTPSAFIFLYENQLFLTF 338 (485)
Q Consensus 276 ~-------~~~~~~V~f~-~~~-~~~-lls~s~D~tIkIWDv---~tg----~~~~~l~gh~~~v~avaFspdg~llaS~ 338 (485)
. ...+..+++- .+. +.. .++...++.++.|.+ .++ ++++.+. -...+..+++.++.+.|.-+
T Consensus 119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyis 197 (353)
T d1h6la_ 119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIA 197 (353)
T ss_dssp SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEe
Confidence 1 1235566662 233 333 344578899988866 333 3444453 23478899999987777777
Q ss_pred e-CCcEEEEeCC------CcEEEEeec-CCCCCCCCCeeEEE--ECCCCC-EEEEEecCCCCCCCCcCCCCeEEEEeCCC
Q 011452 339 R-NRTVAVWNFR------GELVTSFED-HLLWHPDCNTNNIY--ITSDQD-LIISYCKADSDDPLAEGNAGSINISNILT 407 (485)
Q Consensus 339 s-D~TIklWd~~------G~ll~tl~g-H~~~~~~~~v~sva--fSpDG~-~LaS~s~d~~~d~~~~~~DgtIklWdl~T 407 (485)
- +.-|...+.+ +.++-...+ |.... +..|+ -.++|+ ||+..|.. |++..|+|.++
T Consensus 198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D----~EGlaiy~~~~~~GylivSsQG----------~n~f~vydr~~ 263 (353)
T d1h6la_ 198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPD----IEGLTIYYAADGKGYLLASSQG----------NSSYAIYERQG 263 (353)
T ss_dssp ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSC----EEEEEEEECGGGCEEEEEEEGG----------GTEEEEEESST
T ss_pred cCccceEEEEeccCCCccceeeecccCccccCC----ccccEEEEcCCCCeEEEEEcCC----------CCeEEEEecCC
Confidence 7 6544333332 234433333 33322 55555 455655 66666652 79999999887
Q ss_pred -CeEEEEec
Q 011452 408 -GKCLAKIR 415 (485)
Q Consensus 408 -Gk~l~tl~ 415 (485)
.+.+..|+
T Consensus 264 ~~~~~g~F~ 272 (353)
T d1h6la_ 264 QNKYVADFQ 272 (353)
T ss_dssp TCCEEEEEE
T ss_pred CccccceEE
Confidence 47777664
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.84 Score=41.48 Aligned_cols=209 Identities=8% Similarity=0.031 Sum_probs=129.0
Q ss_pred ccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCe---EEEEE-c-C-CcEEEEEEcC-CceEEEEEcCCCCeeEEEEec
Q 011452 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSI-S-D-KNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 192 ~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~---~l~tl-~-~-~~V~~VafSp-g~~ll~sss~~~D~tIklWdi 264 (485)
+..+..|+|+..++++.-+-..++.|+--++.... ...++ . + ..+..+|+-+ ++.|..+... .+.|.+.++
T Consensus 29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~--~~~I~v~~~ 106 (266)
T d1ijqa1 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSV--LGTVSVADT 106 (266)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETT--TTEEEEEET
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecC--CCEEEeEec
Confidence 44556889986566666666667778777775322 11222 2 2 3577899985 6666555433 368999998
Q ss_pred CCCeEEEEeecCCcceeEEEEEecCCCEEEEEe--CCCcEEEEECCCCeeEEecccCCCceEEEEEcCCCc-EEEEEe-C
Q 011452 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQ-LFLTFR-N 340 (485)
Q Consensus 265 ~tG~~L~tl~~~~~~~~~V~f~~~~~~~lls~s--~D~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~-llaS~s-D 340 (485)
....+...+......-..++.. |..+.|.... ....|.--++...............+.++++.+.++ +..+-. .
T Consensus 107 ~g~~~~~~~~~~~~~P~~l~vd-~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~ 185 (266)
T d1ijqa1 107 KGVKRKTLFRENGSKPRAIVVD-PVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL 185 (266)
T ss_dssp TSSSEEEEEECTTCCEEEEEEE-TTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred CCceEEEEEcCCCCCcceEEEE-cccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCc
Confidence 7665555555545566778875 4466777654 445676677775554444444556899999998765 555545 8
Q ss_pred CcEEEEeCCCcE-EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEecCCC
Q 011452 341 RTVAVWNFRGEL-VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDDPLAEGNAGSINISNILTGKCLAKIRASN 418 (485)
Q Consensus 341 ~TIklWd~~G~l-l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl~gH~ 418 (485)
++|..-|++|.- ...+.+.... ..-.+|++. +.+|--... .+++|.-.|..+|+.+..+....
T Consensus 186 ~~I~~~~~dG~~~~~~~~~~~~~---~~p~~lav~--~~~ly~td~----------~~~~I~~~~~~~g~~~~~~~~~~ 249 (266)
T d1ijqa1 186 HSISSIDVNGGNRKTILEDEKRL---AHPFSLAVF--EDKVFWTDI----------INEAIFSANRLTGSDVNLLAENL 249 (266)
T ss_dssp TEEEEEETTSCSCEEEEECTTTT---SSEEEEEEE--TTEEEEEET----------TTTEEEEEETTTCCCCEEEECSC
T ss_pred CEEEEEECCCCCEEEEEeCCCcc---cccEEEEEE--CCEEEEEEC----------CCCeEEEEECCCCcceEEEEcCC
Confidence 899999998643 2223332211 013456655 445554443 26889888989998888776643
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=94.85 E-value=2.3 Score=42.76 Aligned_cols=80 Identities=6% Similarity=-0.134 Sum_probs=50.7
Q ss_pred CcEEEEECCCCeeEEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcEEEEeecCCCCCCCCCeeEEEECCCC
Q 011452 300 ENLQILDVRNFELTEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GELVTSFEDHLLWHPDCNTNNIYITSDQ 377 (485)
Q Consensus 300 ~tIkIWDv~tg~~~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~ll~tl~gH~~~~~~~~v~svafSpDG 377 (485)
++|.-||+.|||.+-..+.... ..+=+.+-.|.++..++ |+.++.+|.+ ||.|-+++--...+ -.-+.|.-||
T Consensus 457 G~l~AiD~~tGk~~W~~~~~~p-~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~----~~P~ty~~~G 531 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEHVSP-WNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV----AAPSTYMVDG 531 (573)
T ss_dssp EEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC----SCCEEEEETT
T ss_pred ccEEEeCCCCCceEeeecCCCC-CCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc----ccCEEEEECC
Confidence 4688899999998765543321 11112344677777788 9999999996 99998876432211 1125556688
Q ss_pred C-EEEEEe
Q 011452 378 D-LIISYC 384 (485)
Q Consensus 378 ~-~LaS~s 384 (485)
+ ||+..+
T Consensus 532 kQYv~v~~ 539 (573)
T d1kb0a2 532 RQYVSVAV 539 (573)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEe
Confidence 5 555544
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.82 E-value=0.36 Score=47.77 Aligned_cols=53 Identities=6% Similarity=0.174 Sum_probs=40.8
Q ss_pred cccCceEEEEeCCCCeEEEEeeCCCcEEEeecCCCeE--EEEEcC--------CcEEEEEEcCC
Q 011452 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--LYSISD--------KNVQEIKISPG 244 (485)
Q Consensus 191 ~~~~~~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~--l~tl~~--------~~V~~VafSpg 244 (485)
.+..|+.++|. |||++|++.-.++.|++.+.++++. +..+.. .....|+|+|+
T Consensus 25 ~L~~P~~la~~-pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd 87 (450)
T d1crua_ 25 NLNKPHALLWG-PDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD 87 (450)
T ss_dssp CCSSEEEEEEC-TTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred CCCCceEEEEe-CCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence 36789999997 8999999875579999999888763 344421 35788999983
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=94.38 E-value=0.51 Score=46.67 Aligned_cols=73 Identities=19% Similarity=0.160 Sum_probs=48.8
Q ss_pred EEecccCCCceEEEEEcCCCcEEEEEe-CCcEEEEeCC-CcE--EEEeecCC-CCCCCCCeeEEEECCC----CCEEEEE
Q 011452 313 TEVSRTEFMTPSAFIFLYENQLFLTFR-NRTVAVWNFR-GEL--VTSFEDHL-LWHPDCNTNNIYITSD----QDLIISY 383 (485)
Q Consensus 313 ~~~l~gh~~~v~avaFspdg~llaS~s-D~TIklWd~~-G~l--l~tl~gH~-~~~~~~~v~svafSpD----G~~LaS~ 383 (485)
++++...-..+++++|.|||++|++-. .|+|++.+.. |+. +..+..-. ...-.....+|+|.|| +.+-+++
T Consensus 19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsy 98 (450)
T d1crua_ 19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (450)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEE
Confidence 344434456899999999999999998 8999999985 543 23332111 0111123678999995 7777777
Q ss_pred ec
Q 011452 384 CK 385 (485)
Q Consensus 384 s~ 385 (485)
+.
T Consensus 99 t~ 100 (450)
T d1crua_ 99 TF 100 (450)
T ss_dssp EE
T ss_pred ec
Confidence 64
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=93.95 E-value=0.6 Score=47.29 Aligned_cols=143 Identities=8% Similarity=0.033 Sum_probs=86.0
Q ss_pred ccccCCCCcccccccccccccceEEEEEe---cCEEEEEeCCCeEEeeecccCcEEEEeecCCcccE-------------
Q 011452 76 YDTHDPKGHCSMVLPFLRKRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI------------- 139 (485)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~s~V~~i~~s---~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~i------------- 139 (485)
.-.||.....+...|. ..++... .+.++....+|.+.++|++||+++......+..+.
T Consensus 288 ~~~~D~wd~d~~~~~~------l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~ 361 (560)
T d1kv9a2 288 VTPGDSWDFTATQQIT------LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEA 361 (560)
T ss_dssp SSTTCCSCCCCCSCEE------EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEEC
T ss_pred ccccccccccccceee------eeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhcccccc
Confidence 3456666666654333 2344444 46888999999999999999999875543222221
Q ss_pred ----------------------EEEEEeeCCCEEEEEEeecCCCC--------------------------cccceeEEE
Q 011452 140 ----------------------RSLFYNKNNDSLITVSVYASDNF--------------------------SSLRCRSTR 171 (485)
Q Consensus 140 ----------------------~sv~~spdg~~Las~S~d~~~d~--------------------------stL~~~t~~ 171 (485)
...+|+|+...+..-+.+....+ ..-....+.
T Consensus 362 ~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~ 441 (560)
T d1kv9a2 362 PGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALL 441 (560)
T ss_dssp TTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEE
T ss_pred ccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceE
Confidence 25678999888776554321110 000123455
Q ss_pred EeEeccCCcCcccceeeeccccCc--eEEEEeCCCCeEEEEeeCCCcEEEeecCCCeEEEEEc
Q 011452 172 IEYIRRGKPDAGFALFESESLKWP--GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (485)
Q Consensus 172 lw~i~~G~~~~~~~lf~~~~~~~~--~~V~Fs~pnG~~Las~s~D~tiKlWdl~~g~~l~tl~ 232 (485)
-+|+.+|+. +|+...-... ..++- .+| ++..|+.|+.++-+|.+||+.|.++.
T Consensus 442 A~D~~tGk~-----~W~~~~~~~~~gg~l~T--agg-lVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 442 AWDPVKQKA-----AWKVPYPTHWNGGTLST--AGN-LVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp EEETTTTEE-----EEEEEESSSCCCCEEEE--TTT-EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCCeE-----eeeccCCCCCCCceeEE--CCC-EEEEECCCCcEEEEECCCCcEeEEEE
Confidence 566667765 4554211111 12333 244 44457889999999999999987775
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.94 E-value=0.61 Score=47.39 Aligned_cols=78 Identities=14% Similarity=0.097 Sum_probs=49.4
Q ss_pred CCcEEEeecCCCeEEEEEc-CCcEEEEEEc-CCceEEEEEcCCCCeeEEEEecCCCeEEEEeecCCc-ceeEEEEEecCC
Q 011452 214 DSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH-RNKKVDFIEQFN 290 (485)
Q Consensus 214 D~tiKlWdl~~g~~l~tl~-~~~V~~VafS-pg~~ll~sss~~~D~tIklWdi~tG~~L~tl~~~~~-~~~~V~f~~~~~ 290 (485)
.+.+.=+|+.+|+.+-... ...+.+=.++ .++.+.+. +.|+.++-+|.+|||+|.+++--.. .-..+.|. .+|
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~G---t~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~-~~G 540 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTG---TGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWE-QDG 540 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEE---CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE-ETT
T ss_pred CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEe---CCCCeEEEEECCCCcEeEEEECCCCccccCEEEE-ECC
Confidence 3678889999999887664 2333322233 45555443 4568999999999999999873211 22257774 455
Q ss_pred C-EEEE
Q 011452 291 E-KLLV 295 (485)
Q Consensus 291 ~-~lls 295 (485)
. ++++
T Consensus 541 ~qYv~i 546 (582)
T d1flga_ 541 EQYLGV 546 (582)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 3 3444
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.42 E-value=3.5 Score=39.39 Aligned_cols=243 Identities=12% Similarity=0.101 Sum_probs=120.1
Q ss_pred cCEEE-EEeCCC----eEEeeecccCcEEEEeecCCcccEEEEEEeeCCCEEEEEEeecCCCC------cccceeEEEEe
Q 011452 105 RDIVF-ALAQSG----VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNF------SSLRCRSTRIE 173 (485)
Q Consensus 105 ~~~ia-s~s~dg----tiklW~~~tG~~l~tl~g~~~~~i~sv~~spdg~~Las~S~d~~~d~------stL~~~t~~lw 173 (485)
++++| +.+..| +++++|++||+.+-.--. +....+++|.+||+.|+-+..+..+.. .+..-+.+.++
T Consensus 136 ~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h 213 (430)
T d1qfma1 136 GEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYH 213 (430)
T ss_dssp SSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEE
T ss_pred CCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEE
Confidence 66665 555555 799999999997753211 112257899999999987654322110 12333455555
Q ss_pred EeccCCcCcccceeeec-cccCceEEEEeCCCCeEEEEe---eCCCcEEEeec--CCCe--------EEEEEcC-CcEEE
Q 011452 174 YIRRGKPDAGFALFESE-SLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDL--KNYT--------MLYSISD-KNVQE 238 (485)
Q Consensus 174 ~i~~G~~~~~~~lf~~~-~~~~~~~V~Fs~pnG~~Las~---s~D~tiKlWdl--~~g~--------~l~tl~~-~~V~~ 238 (485)
.+-+++. ....+|+.. ...+...+..+ .+|++|... ..+.+..+|-+ .... ....+.. .....
T Consensus 214 ~lgt~~~-~d~~v~~e~d~~~~~~~~~~s-~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (430)
T d1qfma1 214 VLGTDQS-EDILCAEFPDEPKWMGGAELS-DDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD 291 (430)
T ss_dssp ETTSCGG-GCEEEECCTTCTTCEEEEEEC-TTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE
T ss_pred ECCCCcc-ccccccccccCCceEEeeecc-CCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecccccceE
Confidence 5433322 223456542 12233456676 689887543 23455666643 2211 0111221 11222
Q ss_pred EEEcCCceE-EEEEcCCCCeeEEEEecCCCeE--EEEe-ecCCcceeEEEEEecCCCEEEEEe-CC--CcEEEEECCCCe
Q 011452 239 IKISPGIML-LIFTKASGHVPLKILSIEDGTV--LKSF-NHLLHRNKKVDFIEQFNEKLLVKQ-EN--ENLQILDVRNFE 311 (485)
Q Consensus 239 VafSpg~~l-l~sss~~~D~tIklWdi~tG~~--L~tl-~~~~~~~~~V~f~~~~~~~lls~s-~D--~tIkIWDv~tg~ 311 (485)
...+.|+.+ +.+........|-.-++.++.. .+++ ..+...+..-.+ ...+..|+..- +| ..|++++..+++
T Consensus 292 ~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~-~~~~~~lvl~~~~~~~~~l~v~~~~~~~ 370 (430)
T d1qfma1 292 YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVA-CVRSNFLVLCYLHDVKNTLQLHDLATGA 370 (430)
T ss_dssp EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEE-EETTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEE-EEECCEEEEEEEcCCEeEEEEEECCCCc
Confidence 222333333 3332111112233333333211 1222 222222222222 23456777664 55 457889999988
Q ss_pred eEEecccCCCceEEEEEcCCCc-EEEEEe----CCcEEEEeCC-CcE
Q 011452 312 LTEVSRTEFMTPSAFIFLYENQ-LFLTFR----NRTVAVWNFR-GEL 352 (485)
Q Consensus 312 ~~~~l~gh~~~v~avaFspdg~-llaS~s----D~TIklWd~~-G~l 352 (485)
...........+..+...++.. ++++.+ =.++--+|+. |++
T Consensus 371 ~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 371 LLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 8776555555666555555554 333333 2577777874 653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.72 E-value=0.89 Score=43.24 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=56.3
Q ss_pred CCcEEEEeCC--Cc-E--EEEeecCCCCCCCCCeeEEEECCCCCEEEEEecCCCCC------CCCcCCCCeEEEEeCCCC
Q 011452 340 NRTVAVWNFR--GE-L--VTSFEDHLLWHPDCNTNNIYITSDQDLIISYCKADSDD------PLAEGNAGSINISNILTG 408 (485)
Q Consensus 340 D~TIklWd~~--G~-l--l~tl~gH~~~~~~~~v~svafSpDG~~LaS~s~d~~~d------~~~~~~DgtIklWdl~TG 408 (485)
..+|.++++. +. + +.++++-... ..|+|++.+||.+.+|-...-... .. .+ -++.++|...++
T Consensus 123 ~~~ieif~~~~~~~~l~~~~~v~~~~~~----~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~-~~-~~~g~v~~~~~~ 196 (340)
T d1v04a_ 123 SSTVEVFKFQEEEKSLLHLKTIRHKLLP----SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH-LG-LAWSFVTYYSPN 196 (340)
T ss_dssp CCEEEEEEEETTTTEEEEEEEECCTTCS----SEEEEEEEETTEEEEEESCSCCSHHHHHHHHH-TT-CCCEEEEEECSS
T ss_pred CceeEEEEEeCCCCeEEEEeecCCcccc----CccceEEecCCCEEEecCccCcChhhhhhhHh-hc-CCceeEEEEcCC
Confidence 4567777762 32 2 3455443322 379999999999999842100000 00 00 134556665555
Q ss_pred eEEEEecCCCCCCCCcccccCCCCCCCCccccccccccccccchhcccCCeEEEEEcCCCCEEE-EecCCCcEEEcc
Q 011452 409 KCLAKIRASNGLPAENECSCSGDYSSGSCNVKKHSHASRIRSTVAEALEDITALFYDEDRNEIY-TGNRHGLVHVWS 484 (485)
Q Consensus 409 k~l~tl~gH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~V~sl~fspDg~~La-Sgs~DgtVklWd 484 (485)
++-....+ +..-..|++|||+++|+ +-+..+.|++++
T Consensus 197 ~~~~~~~~---------------------------------------l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~ 234 (340)
T d1v04a_ 197 DVRVVAEG---------------------------------------FDFANGINISPDGKYVYIAELLAHKIHVYE 234 (340)
T ss_dssp CEEEEEEE---------------------------------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred ceEEEcCC---------------------------------------CCccceeEECCCCCEEEEEeCCCCeEEEEE
Confidence 54333322 12567899999998764 445677777654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=90.72 E-value=9.5 Score=38.44 Aligned_cols=194 Identities=15% Similarity=0.092 Sum_probs=113.8
Q ss_pred CCeEEEEeeCCCcEEEeec-CCCeEEEEEcC------------CcE-EEEEEcCCc-----eEEEEEcCCCCeeEEEEec
Q 011452 204 NGKVLTYSAQDSIYKVFDL-KNYTMLYSISD------------KNV-QEIKISPGI-----MLLIFTKASGHVPLKILSI 264 (485)
Q Consensus 204 nG~~Las~s~D~tiKlWdl-~~g~~l~tl~~------------~~V-~~VafSpg~-----~ll~sss~~~D~tIklWdi 264 (485)
||.+.++++.++.+-.-|+ ++|+++-.+.. ..+ +.|++-++. +++.. ..|..|-=.|.
T Consensus 62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~---t~dg~l~Alda 138 (596)
T d1w6sa_ 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKT---QLDGNVAALNA 138 (596)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEE---CTTSEEEEEET
T ss_pred CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEE---eCCCCeEeecc
Confidence 5666666665554444555 57887766521 111 456766432 23333 23467777899
Q ss_pred CCCeEEEEeecCC-c---cee-EEEEEecCCCEEEEEe------CCCcEEEEECCCCeeEEecccC--------------
Q 011452 265 EDGTVLKSFNHLL-H---RNK-KVDFIEQFNEKLLVKQ------ENENLQILDVRNFELTEVSRTE-------------- 319 (485)
Q Consensus 265 ~tG~~L~tl~~~~-~---~~~-~V~f~~~~~~~lls~s------~D~tIkIWDv~tg~~~~~l~gh-------------- 319 (485)
+||+++..+.... + .+. .-.+ .+++++++. ..+-|+=+|++||+++-.+...
T Consensus 139 ~tG~~~w~~~~~d~~~~~~~t~~P~v---~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~ 215 (596)
T d1w6sa_ 139 ETGETVWKVENSDIKVGSTLTIAPYV---VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNI 215 (596)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEE---ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTT
T ss_pred ccCceeccccccccccccccccCCcE---ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCcccccccccccc
Confidence 9999999885211 1 111 1111 157888863 2488999999999987653211
Q ss_pred -----------------------CCceE-EEEEcCCCcEEEEEe-CC----------------cEEEEeCC-CcEEEEee
Q 011452 320 -----------------------FMTPS-AFIFLYENQLFLTFR-NR----------------TVAVWNFR-GELVTSFE 357 (485)
Q Consensus 320 -----------------------~~~v~-avaFspdg~llaS~s-D~----------------TIklWd~~-G~ll~tl~ 357 (485)
...++ ..++.|+..++.-+. +. .|--=|.+ ||++-.+.
T Consensus 216 ~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q 295 (596)
T d1w6sa_ 216 KNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQ 295 (596)
T ss_dssp TCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccc
Confidence 01122 234556555554432 22 24445775 99877554
Q ss_pred --cCCCCCCCCCeeEEE---ECCCCC---EEEEEecCCCCCCCCcCCCCeEEEEeCCCCeEEEEe
Q 011452 358 --DHLLWHPDCNTNNIY---ITSDQD---LIISYCKADSDDPLAEGNAGSINISNILTGKCLAKI 414 (485)
Q Consensus 358 --gH~~~~~~~~v~sva---fSpDG~---~LaS~s~d~~~d~~~~~~DgtIklWdl~TGk~l~tl 414 (485)
.|..|..+|...-+. ...||+ .++...+ +|.+-++|-.||+.+...
T Consensus 296 ~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k-----------~G~~~vlDr~tG~~i~~~ 349 (596)
T d1w6sa_ 296 KTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDR-----------NGIVYTLDRTDGALVSAN 349 (596)
T ss_dssp SSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECT-----------TSEEEEEETTTCCEEEEE
T ss_pred ceeccccCCccccceeeeeccccccccccceecccc-----------ccceeeecCCCCceeeec
Confidence 577787665322221 234564 5676666 699999999999998654
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=90.72 E-value=7.4 Score=37.16 Aligned_cols=192 Identities=13% Similarity=0.111 Sum_probs=107.0
Q ss_pred cCEEEEEeCCCeEEeeecccCcEEEEeecCCccc---EEEEEEeeCCCEEEEEEeecCCCCcccceeEEEEeEec--cCC
Q 011452 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEV---IRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR--RGK 179 (485)
Q Consensus 105 ~~~ias~s~dgtiklW~~~tG~~l~tl~g~~~~~---i~sv~~spdg~~Las~S~d~~~d~stL~~~t~~lw~i~--~G~ 179 (485)
+-+|+.....+=+.++|++ |+.|..+..+.-+. +..+.++-++..||.+|.-.... -++.+|.+. .+.
T Consensus 40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~------~~l~~~~id~~~~~ 112 (353)
T d1h6la_ 40 NSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGK------NTIEIYAIDGKNGT 112 (353)
T ss_dssp GCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTT------CEEEEEEEETTTTE
T ss_pred ccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcc------eeEEEEEecCcccc
Confidence 4467777777779999987 99999886432221 22223333344567766421111 156677662 121
Q ss_pred cC----cccceeeeccccCceEEEE--eCCCCeE-EEEeeCCCcEEEeec---CCC----eEEEEEc-CCcEEEEEEcC-
Q 011452 180 PD----AGFALFESESLKWPGFVEF--DDVNGKV-LTYSAQDSIYKVFDL---KNY----TMLYSIS-DKNVQEIKISP- 243 (485)
Q Consensus 180 ~~----~~~~lf~~~~~~~~~~V~F--s~pnG~~-Las~s~D~tiKlWdl---~~g----~~l~tl~-~~~V~~VafSp- 243 (485)
+. ...+.+. .+..+..+++ ++.+|++ +.....++.+..|.+ .++ +++.++. ...+..+++.+
T Consensus 113 l~~~~~~~~p~~~--~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde 190 (353)
T d1h6la_ 113 LQSITDPNRPIAS--AIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDE 190 (353)
T ss_dssp EEECSCSSSCEEC--SSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETT
T ss_pred ccccccccccccc--ccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCC
Confidence 10 0001111 1223445666 5556764 444456888888766 344 3556665 46799999996
Q ss_pred CceEEEEEcCCCCeeEEEE--ec--C---CCeEEEEeec--CCcceeEEEEEe-cC-CCEEEEE-eCCCcEEEEECCCC
Q 011452 244 GIMLLIFTKASGHVPLKIL--SI--E---DGTVLKSFNH--LLHRNKKVDFIE-QF-NEKLLVK-QENENLQILDVRNF 310 (485)
Q Consensus 244 g~~ll~sss~~~D~tIklW--di--~---tG~~L~tl~~--~~~~~~~V~f~~-~~-~~~lls~-s~D~tIkIWDv~tg 310 (485)
.+.|.++.. + +.+| +. + .++.+....+ ...-+..|+.-. .+ .++|+++ |.|.+..|+|.++.
T Consensus 191 ~~~LyisEE-~----~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 191 YGSLYIAEE-D----EAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp TTEEEEEET-T----TEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred CCcEEEecC-c----cceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 677777632 1 3456 32 2 3344433332 334455666532 23 3477776 69999999998853
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