Citrus Sinensis ID: 011478

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Secondary Structure (PSIPRED)
cccccccHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccHccccccHHHHHHHHHHHHHHHHHHHHHHHHEHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccc
Coil and Loop (DISEMBL)
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKkwfgkqkssgavlsseenlavsvpvphpcsadedAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAvarfpgksqEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMlrnssksanptfmdpnnphwgwSWLERWMaarpwesgstvdnydlsslksATSRAMSIREISRAYsrrdlnhdnkdsptahklsrppsrrqspstppskapstssitgkvrppspkgsqwggdgdsrsvfsvrsehyrrhsiagssmgdneslasspsvpsymaptqstkarsrgtsplglngtpdkrslgsakkrlsfpsspagprrhsgpprvdispledsevhveekg
Flexible Loop (DISEMBL)
mgkkgswfsavkkvlsseqkdkkdqktiklkkkwfgkqkssgavlsseenlaVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVarfpgksqeeiAVIKIQTAFRGYLARRALRALRGLVRlksliqghsvkrqatttlrcmQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMlrnssksanptfmDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRaysrrdlnhdnkdsptahklsrppsrrqspstppskapstssitgkvrppspkgsqwggdgdsRSVFSVRSEHYRRhsiagssmgdneSLASSPSVPSYMAPtqstkarsrgtsplglngtpdkrslgsakkrlsfpsspagprrhsgpprvdispledsevhveekg
Low Complexity Region (SEG)
MGKKGSWFSAVKKVLSSEqkdkkdqktiklkkkWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHaytvalatavaaeaavaaaqaaaevvrltaVARFPGKSQEEIAVIKIQTAFRGYlarralralrglvrlKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLsrppsrrqspstppskapstssITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Disordered region (IsUnstruct)
******************************************************************************HAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS**********************************************************************************************PHWGWSWLERWMAARPWESG**************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MGKKGSWFS***************************************************************************************************************IAVIKIQTAFRGYLARRALRALRGLV*****************TL*CM*********************************************************************************************************GWSWLERWMAARPWE****************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MGKKGSWFSAVK**************TIKLKKK*****************LAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAE*********AEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSE**********QKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHD***************************************************DSRSVFSVRSEHYRRHSIA********************************TSPLGLNGTPDKRSLGSA********************RVDISPL***********
Disordered Region (DISPRO)
********************************************************************************************************VRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRA*****EWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRN***************HWGWSWLERWMAARPWE****************************************************************************************************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEEKG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q9SF32	454	Protein IQ-DOMAIN 1 OS=Ar	no	no	0.884	0.942	0.408	4e-73
Q8LPG9	668	Protein IQ-DOMAIN 14 OS=A	no	no	0.557	0.404	0.340	1e-33
Q8L4D8	587	Protein IQ-DOMAIN 31 OS=A	no	no	0.299	0.247	0.370	3e-19
Q9FXI5	794	Protein IQ-DOMAIN 32 OS=A	no	no	0.291	0.177	0.273	9e-13

>sp|Q9SF32|IQD1_ARATH Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1

 Score =  275 bits (704), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 198/485 (40%), Positives = 270/485 (55%), Gaps = 57/485 (11%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           M KK  W   VKK  S + K        KLK +    Q S   V+S      V +     
Sbjct: 1   MVKKAKWLKNVKKAFSPDSK--------KLKHESVECQDS---VIS----YPVLIATSRS 45

Query: 61  CSADEDAKLIESENKQNKHAY--TVALATAVAAEAAVAAAQAAAEVV-RLTAVARFPGKS 117
            S   + ++ E   +Q K+ Y  +    TA  A   V +  ++ E V +   V RF GKS
Sbjct: 46  SSPQFEVRVDEVNYEQKKNLYPPSSDSVTATVAHVLVDSPPSSPESVHQAIVVNRFAGKS 105

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
           +EE A I IQ+ FRG+LARR  + +RG  RLK L++G  V+RQA  TL+CMQTL+RVQSQ
Sbjct: 106 KEEAAAILIQSTFRGHLARRESQVMRGQERLKLLMEGSVVQRQAAITLKCMQTLSRVQSQ 165

Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
           IR+RRIRMSEENQA  +QL QK  KE   L  L+ G  W+++ +SKEQ+EA + HK EA 
Sbjct: 166 IRSRRIRMSEENQARHKQLLQKHAKE---LGGLKNGGNWNYSNQSKEQVEAGMLHKYEAT 222

Query: 238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS---TVD 294
           +RRERALAYAF++Q+ L++ SK+ANP FMDP+NP WGWSWLERWMA RPWES        
Sbjct: 223 MRRERALAYAFTHQQNLKSFSKTANPMFMDPSNPTWGWSWLERWMAGRPWESSEKEQNTT 282

Query: 295 NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAP 354
           N D SS+K++T+R     E +++ +R  LN   K                 P+TP     
Sbjct: 283 NNDNSSVKNSTNRNSQGGETAKSSNRNKLNSSTK-----------------PNTP----- 320

Query: 355 STSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPS-VP 413
            ++S T    P   +         S    +  SE  RR SIA  S+ D+E+L+SS +   
Sbjct: 321 -SASSTATRNPRKKRPIPSSIKSKSSDDEAKSSERNRRPSIARPSVSDDETLSSSTARRS 379

Query: 414 SYMAPTQST---KARSRGTSPLGL-NGTPDKRSL----GSAKKRLSFPSSPA-GPRRHSG 464
           S + PT  +   K +S+ +S + +   T ++ S+      AKKRLS  +SPA  PRR S 
Sbjct: 380 SNLIPTTKSARGKPKSQTSSRVAVTTSTTEESSILPEKAPAKKRLSTSASPAPKPRRSSA 439

Query: 465 PPRVD 469
           PP+V+
Sbjct: 440 PPKVE 444

Modulates expression of glucosinolate pathway genes. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPG9|IQD14_ARATH Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/352 (34%), Positives = 179/352 (50%), Gaps = 82/352 (23%)

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           +  +  KIQ AFRGY+AR++ RAL+GLVRL+ +++G+SVKRQ    ++ MQ + RVQSQI
Sbjct: 321 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 380

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVG-EEWDHTAKSKEQIEAKLQHKQEAA 237
           ++RRI+M  ENQA       + EK+  K  A + G + WD +  +KE+ +++ Q K +A 
Sbjct: 381 QSRRIKM-LENQA-------QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAI 432

Query: 238 IRRERALAYAFSNQKMLRNSSKSA--NPTFMDPNNPHWGWSWLERWMA-ARPWESGSTVD 294
           I+RER++AYA+S +K+ +NS KS   N +F     P W W+W++R    A P  S S   
Sbjct: 433 IKRERSMAYAYS-RKLWKNSPKSTQDNRSF-----PQW-WNWVDRQNPLASPAPSYSQPQ 485

Query: 295 -NYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSP-----TAHKLSRPPSRRQSPST 348
            ++ L+  +   S    + + S+ +  R  NH +  +P     T H  SRP         
Sbjct: 486 RDFRLTPSRLCPS---PLSQSSKQHHIRLDNHFDTSTPRSSRSTFHTPSRP--------- 533

Query: 349 PPSKAPSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAG--SSMGDNESL 406
                                       G SR         Y R  + G  S   D++SL
Sbjct: 534 -------------------------IHTGTSR---------YSRGRLRGQDSPFKDDDSL 559

Query: 407 ASSPSVPSYMAPTQSTKARSRGTSPLGLNGTPDKRSLG---SAKKRLSFPSS 455
            S P  PSYMAPT S KA+ R       N  P +R +G   S K+R+S+P +
Sbjct: 560 TSCPPFPSYMAPTVSAKAKVRP------NSNPKERVMGTPVSEKRRMSYPPT 605

May be involved in cooperative interactions with calmodulins or calmodulin-like proteins. May associate with nucleic acids and regulate gene expression at the transcriptional or post-transcriptional level.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L4D8|IQD31_ARATH Protein IQ-DOMAIN 31 OS=Arabidopsis thaliana GN=IQD31 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 63/170 (37%), Positives = 91/170 (53%), Gaps = 25/170 (14%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
           Q EIA   +Q AFRGYLARRA  AL+G++RL++LI+GH V+RQA  TL  +  + R+Q+ 
Sbjct: 111 QREIAATSVQAAFRGYLARRAFWALKGIIRLQALIRGHLVRRQAVATLFSVMGIVRLQAF 170

Query: 178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
            R R IR S+       Q+ +KC     +L+ LQ                 KL +  +A 
Sbjct: 171 ARGREIRKSD----IGVQVYRKC-----RLQLLQGN---------------KLANPTDAY 206

Query: 238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPW 287
           +  ++  A AF+ QK+L +S K       D +NP+    WLE W A+  W
Sbjct: 207 LGIKKLTANAFA-QKLLASSPKVLPVHAYDTSNPNSNLIWLENWSASCFW 255

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FXI5|IQD32_ARATH Protein IQ-DOMAIN 32 OS=Arabidopsis thaliana GN=IQD32 PE=1 SV=3

 Score = 75.5 bits (184), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 42/183 (22%)

Query: 104 VVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATT 163
           +VR  +  +   K  E + V+ IQ A RG+LARR L   + +++L++ ++GH V+ QA  
Sbjct: 200 IVRKESDEKVDEKLDESVIVV-IQAAVRGFLARRELLRSKKVIKLQAAVRGHLVRSQAMG 258

Query: 164 TLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSK 223
           +LRC+Q + ++Q+ +RAR                                    H+ K  
Sbjct: 259 SLRCVQAIVKMQAMVRAR------------------------------------HSTKDG 282

Query: 224 EQIEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTFM--DPNNPHWGWSWLERW 281
            ++ A    K E     ++ L   F+  K L  S+    P  +  DP  P   W+WLERW
Sbjct: 283 SRVSA-TSDKSEPNAAAQKLLENKFA--KHLMESTPKTKPINIKCDPTKPSSAWNWLERW 339

Query: 282 MAA 284
           M+ 
Sbjct: 340 MSV 342

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
147809623	482	hypothetical protein VITISV_018782 [Viti	0.969	0.973	0.743	1e-172
225449126	482	PREDICTED: protein IQ-DOMAIN 1-like [Vit	0.969	0.973	0.741	1e-171
449467523	482	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.954	0.958	0.654	1e-146
224109704	443	predicted protein [Populus trichocarpa]	0.902	0.986	0.674	1e-144
225439898	479	PREDICTED: protein IQ-DOMAIN 1-like [Vit	0.958	0.968	0.620	1e-142
255577665	461	conserved hypothetical protein [Ricinus	0.805	0.845	0.719	1e-141
224069348	479	predicted protein [Populus trichocarpa]	0.948	0.958	0.558	1e-134
449486538	470	PREDICTED: protein IQ-DOMAIN 1-like [Cuc	0.927	0.955	0.624	1e-133
224140165	472	predicted protein [Populus trichocarpa]	0.933	0.957	0.564	1e-131
356565733	444	PREDICTED: protein IQ-DOMAIN 1-like [Gly	0.902	0.984	0.618	1e-130

>gi|147809623|emb|CAN66644.1| hypothetical protein VITISV_018782 [Vitis vinifera]

 Score =  610 bits (1572), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 356/479 (74%), Positives = 397/479 (82%), Gaps = 10/479 (2%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKG+WFSAVKK LS E K+KKD+ T K KKKWFGK K+   V SS EN         P
Sbjct: 1   MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAA AAAEVVRLT V RF GKS+EE
Sbjct: 61  I---EDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEE 117

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQIRA
Sbjct: 118 VAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRA 177

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEEN A QRQLQ K +KE+EKLRA  +G++WD + +SKEQIEA LQ KQEAA+RR
Sbjct: 178 RRIRMSEENLALQRQLQLKRDKELEKLRA-SIGDDWDDSVQSKEQIEANLQSKQEAAVRR 236

Query: 241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 297
           ERALAYAFS+Q+  +NSSK ANPTFMDPNNPHWGWSWLERWMAARPWES S ++   N D
Sbjct: 237 ERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTD 296

Query: 298 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 357
            +SLKS TSRA SI EIS+AY+RRDLN D K SPTA K SRPPS RQSPSTPPSKA S+S
Sbjct: 297 HASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPSRPPS-RQSPSTPPSKAQSSS 355

Query: 358 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 417
           S+TGK RP SPKGS WG D DSRS+ S++SE YRRHSIAGS + D+ESLASSP+VPSYMA
Sbjct: 356 SVTGKTRPASPKGSGWGADDDSRSMLSIQSEWYRRHSIAGSLVRDDESLASSPAVPSYMA 415

Query: 418 PTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLE 474
            T+ST+ARSR  SPLGL  NGTP+K S  SAKKRLSFP+SPAGPRRHSGPPRV+ S ++
Sbjct: 416 STESTRARSRLPSPLGLEKNGTPEKASGSSAKKRLSFPASPAGPRRHSGPPRVETSSIK 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225449126|ref|XP_002277282.1| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera]

 Score =  609 bits (1570), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 355/479 (74%), Positives = 397/479 (82%), Gaps = 10/479 (2%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKG+WFSAVKK LS E K+KKD+ T K KKKWFGK K+   V SS EN         P
Sbjct: 1   MGKKGNWFSAVKKALSPEPKEKKDKTTPKSKKKWFGKHKNLDPVSSSTENAMPLPAPAPP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAA AAAEVVRLT V RF GKS+EE
Sbjct: 61  I---EDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAHAAAEVVRLTTVTRFSGKSKEE 117

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQIRA
Sbjct: 118 VAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRA 177

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEEN A QRQLQ K +KE+EKLRA  +G++WD + +SKEQIEA LQ KQEAA+RR
Sbjct: 178 RRIRMSEENLALQRQLQLKRDKELEKLRA-SMGDDWDDSVQSKEQIEANLQSKQEAAVRR 236

Query: 241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 297
           ERALAYAFS+Q+  +NSSK ANPTFMDPNNPHWGWSWLERWMAARPWES S ++   N D
Sbjct: 237 ERALAYAFSHQQTWKNSSKPANPTFMDPNNPHWGWSWLERWMAARPWESRSAMEKELNTD 296

Query: 298 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 357
            +SLKS TSRA SI EIS+AY+RRDLN D K SPTA K SRPPS RQSPSTPPSKA S+S
Sbjct: 297 HASLKSTTSRAFSIGEISKAYARRDLNLDKKPSPTAQKPSRPPS-RQSPSTPPSKAQSSS 355

Query: 358 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 417
           S+TGK +P SPKGS WG D DSRS+ S++SE YRRHSIAGS + D+ESLASSP+VPSYMA
Sbjct: 356 SVTGKTKPASPKGSGWGADDDSRSMLSIQSERYRRHSIAGSLVRDDESLASSPAVPSYMA 415

Query: 418 PTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLE 474
            T+ST+ARSR  SPLGL  NGTP+K S  SAKKRLSFP+SPAGPRRHSGPPRV+ S ++
Sbjct: 416 STESTRARSRLPSPLGLEKNGTPEKASGSSAKKRLSFPASPAGPRRHSGPPRVETSSIK 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467523|ref|XP_004151472.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 317/484 (65%), Positives = 378/484 (78%), Gaps = 22/484 (4%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSE-ENLAVSV-PVP 58
           MGKKG WFSAVKK  + E K+KKDQKT K KK+WFGK K    V S+E  +  VS+ P+ 
Sbjct: 1   MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPI- 59

Query: 59  HPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 E+ KL ++EN+Q+KHAY+VA+ATAVAAEAAVAAAQAAAEVVRLT + R+ GKS+
Sbjct: 60  ------EEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSK 113

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQI
Sbjct: 114 EEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQI 173

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEENQA QRQLQQK E+E+E+L       EW+ + KSKEQIEA+L ++QEAA 
Sbjct: 174 RARRIRMSEENQALQRQLQQKHERELERL-TTSANYEWNDSTKSKEQIEARLANRQEAAT 232

Query: 239 RRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDL 298
           RRERALAYA+S+Q   ++SSKSAN TFMDPNNP WGWSWLERWMAARPWE+ ST+D +D 
Sbjct: 233 RRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKSTMDYHDR 292

Query: 299 SSLKSATSRAMSIREISRAYSRRDLNHD----NKDSPTAHKLSRPPSRRQSPSTPPSKAP 354
            S+KS  S   SI +I++AY+RRDLN D       +PT+ K SR PS  QSP+T P+KA 
Sbjct: 293 GSVKSVISHTTSIGDIAKAYARRDLNLDIIKQFPRTPTSQKTSRAPS-HQSPAT-PTKAY 350

Query: 355 STSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPS 414
           S+ S   K++P SP+G  W GD DSRS  S++SE YRRHSIAGSS+ D+ES  SSPSVPS
Sbjct: 351 SSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVPS 410

Query: 415 YMAPTQSTKARSRGTSPLGLN---GTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 471
           YMA T++ +ARSR +SP+G     GTP   S+G AKKRLSFP SPA  RRHSGPP+++ S
Sbjct: 411 YMASTEAARARSRLSSPMGTEKTAGTPG--SVG-AKKRLSFPGSPANSRRHSGPPKLEAS 467

Query: 472 PLED 475
           P+++
Sbjct: 468 PIKN 471

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224109704|ref|XP_002315283.1| predicted protein [Populus trichocarpa] gi|222864323|gb|EEF01454.1| predicted protein [Populus trichocarpa]

 Score =  519 bits (1337), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 323/479 (67%), Positives = 368/479 (76%), Gaps = 42/479 (8%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGK+GSWFSA+KK L S +K   +++  +              V S EE +A S+  P  
Sbjct: 1   MGKRGSWFSALKKALGSSKKKWSEKEKNR-----------DLGVSSHEETVAPSLSPPRT 49

Query: 61  CSAD--EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 ED KL E+EN+Q+KHAY+VALATAVAAEAAVAAAQAAAEVVRLT VA + GKS+
Sbjct: 50  PPPPTAEDVKLTEAENEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTTVAHYSGKSK 109

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA I+IQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQAT TLR MQTLARVQSQI
Sbjct: 110 EEIAAIRIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATATLRAMQTLARVQSQI 169

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEEN+A QRQLQQK +KE+EKLR     ++WD + +SKE++EA L  KQEAA+
Sbjct: 170 RARRIRMSEENEALQRQLQQKHDKELEKLRT--SVKQWDDSPQSKEEVEASLLQKQEAAM 227

Query: 239 RRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDL 298
           RRERALAYA+S+Q+M + SSKSAN TFMDPNNP WGWSWLERWMAARPWES ST+DN D 
Sbjct: 228 RRERALAYAYSHQQMWKQSSKSANATFMDPNNPRWGWSWLERWMAARPWESRSTIDNNDR 287

Query: 299 SSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSS 358
           +S+KS TS                       SP A K SRPPS RQSPSTPPSKAPSTSS
Sbjct: 288 ASVKSTTS----------------------PSPGAQKSSRPPS-RQSPSTPPSKAPSTSS 324

Query: 359 ITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAP 418
           +TGK +PPSP+GS WGGD DSRS FSV+SE YRRHSIAGSS+ D+ESLASSPSVPSYMAP
Sbjct: 325 VTGKAKPPSPRGSAWGGDEDSRSTFSVQSERYRRHSIAGSSIRDDESLASSPSVPSYMAP 384

Query: 419 T--QSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPL 473
           T  QS KA+SR +SPLG+  NGTPDK S+G  KKRLSF +SPAG RRHSGPPRVD S +
Sbjct: 385 TRSQSAKAKSRLSSPLGIDNNGTPDKASVGYVKKRLSFSASPAGARRHSGPPRVDASAV 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439898|ref|XP_002279479.1| PREDICTED: protein IQ-DOMAIN 1-like [Vitis vinifera]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 301/485 (62%), Positives = 362/485 (74%), Gaps = 21/485 (4%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG+W S+VKK LS E K+KKDQ+  K KKKWFGK K      SS E       VP P
Sbjct: 1   MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLET------VPGP 54

Query: 61  CSAD-EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQE 119
             A  E+ K IE +N+ +KH Y+VA  T +A+   +   +   EVV +T + +  GK++E
Sbjct: 55  SLAPPEEVKTIEPDNEHHKHVYSVAATTTMAS---LDVPETDVEVVEITTLTQSTGKAKE 111

Query: 120 EIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
           E A IKIQTAFRGYLARRALRALRGLVRL+SLIQG +VKRQA  TLRCMQTLARVQSQI 
Sbjct: 112 EAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQIC 171

Query: 180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
            RRIRMSEENQA QRQL QK  KE E+L+   +GEEWD + +SKEQIEA L +KQ AA+R
Sbjct: 172 YRRIRMSEENQALQRQLLQKQAKEFEQLK---MGEEWDDSLQSKEQIEAGLLNKQGAAMR 228

Query: 240 RERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NY 296
           RERALAYAFS+Q+  +NSSKS N  FMDP+NPHWGWSWLERWMAARPWES ST D   N 
Sbjct: 229 RERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERWMAARPWESRSTTDKELNN 288

Query: 297 DLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPST 356
           D  S+KS  SR+++  EI++AY+R  L+  +K SPTA +    P  RQSPSTPPSKA S+
Sbjct: 289 DQLSIKSG-SRSITGGEITKAYARHLLD-SSKPSPTASQKPYHPPARQSPSTPPSKAVSS 346

Query: 357 SSITGKVRP-PSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSY 415
           SS  GK +P  SP+G+ WG D D++S+ S++SE +RRHSIAGSS+GD+ESLASSP+VPSY
Sbjct: 347 SSAAGKFKPAASPRGNLWGQDDDTKSMVSIQSERFRRHSIAGSSVGDDESLASSPAVPSY 406

Query: 416 MAPTQSTKARSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPL 473
           MAPT+S KA+SR  SPLGL  NGTP+K S G AKKRLSFP+SPA PRRHSGPPRV+ S L
Sbjct: 407 MAPTKSAKAKSRLQSPLGLENNGTPEKGSSGIAKKRLSFPASPARPRRHSGPPRVESSSL 466

Query: 474 EDSEV 478
            +  V
Sbjct: 467 TEGIV 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577665|ref|XP_002529709.1| conserved hypothetical protein [Ricinus communis] gi|223530811|gb|EEF32675.1| conserved hypothetical protein [Ricinus communis]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 303/421 (71%), Positives = 344/421 (81%), Gaps = 31/421 (7%)

Query: 65  EDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVI 124
           ED KL E+E++Q+KHAY+VALATAVAAEAAVAAAQAAAEVVRLT+ A + GKS+EE+A I
Sbjct: 62  EDVKLTEAESEQSKHAYSVALATAVAAEAAVAAAQAAAEVVRLTSTACYCGKSREEVAAI 121

Query: 125 KIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIR 184
           KIQTAFRGYLARRALRALRGLVRLK+LIQG SVKRQA  TLR MQTLARVQSQIRARR R
Sbjct: 122 KIQTAFRGYLARRALRALRGLVRLKTLIQGQSVKRQAANTLRAMQTLARVQSQIRARRAR 181

Query: 185 MSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERAL 244
           MSEENQA QRQLQQK EKE+EKLR+  +GE+WD +A+SKE                    
Sbjct: 182 MSEENQALQRQLQQKREKELEKLRSA-IGEQWDDSAQSKE-------------------- 220

Query: 245 AYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDNYDLSSLKSA 304
                 Q+  +NSSKSAN TFMDPNNPHWGWSWLERWMAARPWES STVDN D +S+KS 
Sbjct: 221 ------QQAWKNSSKSANATFMDPNNPHWGWSWLERWMAARPWESRSTVDNNDRASVKST 274

Query: 305 TSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSITGKVR 364
            SRA+SI EISRAYSRRDL+HD K SP A K +R PS RQSPSTPPSKAPSTSS+TGK++
Sbjct: 275 MSRALSIGEISRAYSRRDLDHD-KPSPGAQKSTRLPS-RQSPSTPPSKAPSTSSVTGKIK 332

Query: 365 PPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKA 424
           PPSP+GS WGGD DSRS+FSV+SE YRRHSIAGSS+ D+ESLASSPSVPSYMAPTQS KA
Sbjct: 333 PPSPRGSAWGGDDDSRSLFSVQSERYRRHSIAGSSVRDDESLASSPSVPSYMAPTQSAKA 392

Query: 425 RSRGTSPLGL--NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDISPLEDSEVHVEE 482
           +SR  SPLG+  +GT DK S+ SAKKRLSF  SPAG RRHSGPPRV+ S + + E+H+EE
Sbjct: 393 KSRLPSPLGVDKDGTRDKASVASAKKRLSFSGSPAGLRRHSGPPRVNSSIMNNIEMHIEE 452

Query: 483 K 483
           +
Sbjct: 453 Q 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069348|ref|XP_002326336.1| predicted protein [Populus trichocarpa] gi|222833529|gb|EEE72006.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 267/478 (55%), Positives = 339/478 (70%), Gaps = 19/478 (3%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG WFS+VKK LS + K+KKDQK+ K KKKWFGKQ+      S E     S P P P
Sbjct: 1   MGRKGKWFSSVKKALSPDSKEKKDQKSNKSKKKWFGKQQLDSDSTSLENVTMRSPPPPQP 60

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               ++ KLIE+ N++N+H Y+V + TA  AE A    Q   EV + T V ++ GKS+EE
Sbjct: 61  ----DEVKLIETTNEENQHTYSVPVVTAAVAEHAPITVQTTTEVFQPTKVNKYAGKSKEE 116

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           +A IKIQTAFRGY+ARRALRALRGL RLKSL++G ++KRQAT TL CMQTLARVQSQI  
Sbjct: 117 VAAIKIQTAFRGYMARRALRALRGLFRLKSLMEGPTIKRQATHTLHCMQTLARVQSQIHT 176

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL  +  KE E   +LQ+GEEWD + +SKEQIEA L +K EAA+RR
Sbjct: 177 RRIRMSEENQALQRQLLHEHAKEFE---SLQIGEEWDDSLQSKEQIEANLLNKFEAAVRR 233

Query: 241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 297
           ERALAY+FS+Q+  + SS++ NP FM   NP WGWSWLERWMAA PWES S  +   N D
Sbjct: 234 ERALAYSFSHQQAWKISSRAVNPMFMS-GNPSWGWSWLERWMAAHPWESRSMTEKELNND 292

Query: 298 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 357
            SSLKSA SR+++  +IS++Y+R  LN D K +P   +     +  Q  STP    P+ S
Sbjct: 293 HSSLKSA-SRSITGGDISKSYARYQLNSD-KLTPRESERPTKTANLQFQSTP--NKPAAS 348

Query: 358 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 417
           ++  K++  SP+    G D +S+SV SV+S+H RRHSIAGS + D+ESL SSP +PSYM 
Sbjct: 349 TVARKLKSASPRSGIGGLDDESKSVVSVQSDHSRRHSIAGSFVRDDESLGSSPPLPSYMV 408

Query: 418 PTQSTKARSRGTSPLG--LNGTPDKR--SLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 471
           PT+S +A+SR  +PLG  +NG P+K   SLGSAKKRLS+P SPA  RR+SGPP+++ S
Sbjct: 409 PTESARAKSRLQNPLGAEMNGAPEKEKGSLGSAKKRLSYPPSPAKARRYSGPPKLESS 466

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486538|ref|XP_004157326.1| PREDICTED: protein IQ-DOMAIN 1-like [Cucumis sativus]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 303/485 (62%), Positives = 364/485 (75%), Gaps = 36/485 (7%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSE-ENLAVSV-PVP 58
           MGKKG WFSAVKK  + E K+KKDQKT K KK+WFGK K    V S+E  +  VS+ P+ 
Sbjct: 1   MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSILPI- 59

Query: 59  HPCSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQ 118
                 E+ KL ++EN+Q+KHAY+VA+ATAVAAEAAVAAAQAAAEVVRLT + R+ GKS+
Sbjct: 60  ------EEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSK 113

Query: 119 EEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           EEIA IKIQTAFRGYLARRALRALRGLVRLKSLIQG SVKRQATTTLRCMQTLARVQSQI
Sbjct: 114 EEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQI 173

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
           RARRIRMSEENQA QRQLQQK E+E+E+L       EW+ + KSKEQIEA+L ++QEAA 
Sbjct: 174 RARRIRMSEENQALQRQLQQKHERELERL-TTSANYEWNDSTKSKEQIEARLANRQEAAT 232

Query: 239 RRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS-----TV 293
           RRERALAYA+S+Q   ++SSKSAN TFMDPNNP WGWSWLERWMAARPWE+        +
Sbjct: 233 RRERALAYAYSHQNSWKSSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKKRDQPHNL 292

Query: 294 DNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKA 353
           D     SL+ + S++   + +S+          + D P   K SR PS  QSP+T P+KA
Sbjct: 293 DRRHRQSLRPSRSQSRHHQAVSK----------DSDEP---KTSRAPS-HQSPAT-PTKA 337

Query: 354 PSTSSITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVP 413
            S+ S   K++P SP+G  W GD DSRS  S++SE YRRHSIAGSS+ D+ES  SSPSVP
Sbjct: 338 YSSLSAGRKLKPDSPRGIGWSGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVP 397

Query: 414 SYMAPTQSTKARSRGTSPLGLN---GTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRVDI 470
           SYMA T++ +ARSR +SP+G     GTP   S+G AKKRLSFP SPA  RRHSGPP+++ 
Sbjct: 398 SYMASTEAARARSRLSSPMGTEKTAGTPG--SVG-AKKRLSFPGSPANSRRHSGPPKLEA 454

Query: 471 SPLED 475
           SP+++
Sbjct: 455 SPIKN 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140165|ref|XP_002323455.1| predicted protein [Populus trichocarpa] gi|222868085|gb|EEF05216.1| predicted protein [Populus trichocarpa]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 270/478 (56%), Positives = 339/478 (70%), Gaps = 26/478 (5%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MG+KG WFS+VKK LS + K+K DQK      KWFGKQ+      +S EN+ +  P P P
Sbjct: 1   MGRKGKWFSSVKKALSPDPKEKTDQK------KWFGKQQLDSDS-TSLENVTMLSPPPQP 53

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               E+ KLIE+ ++ N+H + V +ATA   E A    Q   EVV+LT V ++ GKS+EE
Sbjct: 54  ----EEVKLIETTDEVNQHTFPVPVATAAVPEPAPTTVQTNIEVVQLTKVNKYAGKSKEE 109

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
            A IKIQT FRGY+ARRALRALRGL RLK L++G  +KRQAT TLRCMQTLARVQSQI  
Sbjct: 110 EAAIKIQTTFRGYMARRALRALRGLARLKFLMEGPRIKRQATHTLRCMQTLARVQSQIHT 169

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL QK  KE+E LR   +GEEWD + +SKEQIEA L +K EAA RR
Sbjct: 170 RRIRMSEENQALQRQLLQKHAKELENLR---IGEEWDDSLQSKEQIEASLLNKFEAATRR 226

Query: 241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVD---NYD 297
           ERALAYAFS+Q+ L+NSS+SANP FM+  NP WGWSWLERWMAA PWES S ++   N D
Sbjct: 227 ERALAYAFSHQQTLKNSSRSANPMFMN-GNPSWGWSWLERWMAAHPWESRSLMEKEHNND 285

Query: 298 LSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTS 357
            SS+KSA SR+++  EIS++Y+R  LN D K +P   +     +  QSPSTP  K P+ S
Sbjct: 286 HSSVKSA-SRSITGGEISKSYARYQLNSD-KLTPRESERPTKTTNLQSPSTP--KKPAAS 341

Query: 358 SITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 417
           ++  K++  SP+ +  G + DSRS+ SV+S+  RRHSIAGS + D+ESL SSP++PSYM 
Sbjct: 342 TVARKLKSASPRSNIGGIEDDSRSMVSVQSDRSRRHSIAGSFVRDDESLGSSPALPSYMV 401

Query: 418 PTQSTKARSRGTSPLGL--NGTPDKR--SLGSAKKRLSFPSSPAGPRRHSGPPRVDIS 471
           PTQS +A+SR  S LG   +GTP+K   S G  KKRLS+P SPA  RR+SGPP+++ S
Sbjct: 402 PTQSARAKSRIHSLLGAEKDGTPEKEKGSSGHTKKRLSYPPSPAKGRRYSGPPKLESS 459

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565733|ref|XP_003551092.1| PREDICTED: protein IQ-DOMAIN 1-like [Glycine max]

 Score =  470 bits (1209), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 295/477 (61%), Positives = 358/477 (75%), Gaps = 40/477 (8%)

Query: 1   MGKKGSWFSAVKKVLSSEQKDKKDQKTIKLKKKWFGKQKSSGAVLSSEENLAVSVPVPHP 60
           MGKKGSWFSAVKKV SS+ K  K ++     KK    + +  AV        V  P+   
Sbjct: 1   MGKKGSWFSAVKKVFSSDSKKDKKKQKSDKSKKASSDKDAEAAV--------VLPPI--- 49

Query: 61  CSADEDAKLIESENKQNKHAYTVALATAVAAEAAVAAAQAAAEVVRLTAVARFPGKSQEE 120
               EDAKLIE+E +Q+KHA ++A ATAVAAEAAVAAAQAAAEVVRLT++  + G+++EE
Sbjct: 50  ----EDAKLIEAEKEQSKHAASLAFATAVAAEAAVAAAQAAAEVVRLTSMPHYTGRTKEE 105

Query: 121 IAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           IA IK+QTAFRGY+ARRALRALRGLVRLK+L+QG SVKRQA +TLR MQTLAR+QSQIR 
Sbjct: 106 IAAIKVQTAFRGYMARRALRALRGLVRLKTLVQGQSVKRQAASTLRSMQTLARLQSQIRE 165

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           RRIRMSEENQA QRQL QK EKE+EKLRA  VGEEWD +++SKEQIEAKL H+QEAA+RR
Sbjct: 166 RRIRMSEENQALQRQLHQKHEKELEKLRAA-VGEEWDDSSQSKEQIEAKLLHRQEAALRR 224

Query: 241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGST-VDNYDLS 299
           ERALAY+FS+Q+  + SSKS NPTFMDPNNP WGWSWLERWMA RPW+  ST VD+ D +
Sbjct: 225 ERALAYSFSHQQTWKGSSKSLNPTFMDPNNPQWGWSWLERWMATRPWDGHSTVVDHNDHA 284

Query: 300 SLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLSRPPSRRQSPSTPPSKAPSTSSI 359
           S+KSA SRA+S+ +I++ YS +    D K SP   K  RP     +P +  SKAPST+  
Sbjct: 285 SVKSAASRAVSVGQITKLYSLQ----DKKPSPFGSKARRP-----APQSSHSKAPSTN-- 333

Query: 360 TGKVRP-PSPKGSQ-WGGDGDSRSVFSVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMA 417
            GK RP  S KGS  WGGD DSRS+FSV+SE YRRHSIAGSS+ D++SLAS+P++PSYMA
Sbjct: 334 -GKARPSSSTKGSSVWGGDEDSRSMFSVQSERYRRHSIAGSSVRDDDSLASTPAIPSYMA 392

Query: 418 PTQSTKARSRGTSPLGLNGTPDKRSLG---SAKKRLSF-PSSPAGPRRHSGPPRVDI 470
            T S KARS+      +  +P+K+  G   SA+KRLSF PSS A  RRHS PP+V++
Sbjct: 393 ATSSAKARSK-----IIRHSPEKKGGGGSVSARKRLSFSPSSAANSRRHSDPPKVEM 444

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
TAIR|locus:2100504	430	IQD3 "AT3G52290" [Arabidopsis	0.605	0.681	0.477	5.4e-63
TAIR|locus:2143503	461	iqd2 "AT5G03040" [Arabidopsis	0.630	0.661	0.414	2.6e-54
TAIR|locus:2066226	527	Iqd4 "AT2G26410" [Arabidopsis	0.438	0.402	0.431	9.7e-46
TAIR|locus:2090409	422	IQD5 "AT3G22190" [Arabidopsis	0.351	0.402	0.437	7.3e-38
TAIR|locus:2057459	416	IQD6 "AT2G26180" [Arabidopsis	0.369	0.430	0.432	7.3e-38
TAIR|locus:2134628	534	iqd17 "AT4G00820" [Arabidopsis	0.690	0.625	0.288	3.2e-36
TAIR|locus:2200945	527	IQD18 "AT1G01110" [Arabidopsis	0.677	0.622	0.277	1.4e-30
TAIR|locus:2097478	517	IQD13 "AT3G59690" [Arabidopsis	0.301	0.282	0.375	6.2e-30
TAIR|locus:2043959	669	IQD14 "AT2G43680" [Arabidopsis	0.307	0.222	0.368	7.5e-30
TAIR|locus:2086385	259	IQD10 "AT3G15050" [Arabidopsis	0.340	0.637	0.408	1.3e-29

TAIR|locus:2100504 IQD3 "AT3G52290" [Arabidopsis thaliana (taxid:3702)]

 Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
 Identities = 149/312 (47%), Positives = 180/312 (57%)

Query:     1 MGKKGSWFSAVKKVLSSEXXXXXXXXXXXXXXXWFGKQKSSGAVLSSEENLAVSVPVPHP 60
             MGK  SWFSAVKK LS E               WFGK K      S     A S   P  
Sbjct:     1 MGK--SWFSAVKKALSPEPKQKKEQKPHKSKK-WFGKSKKLDVTNSGA---AYS---PRT 51

Query:    61 CSADEDAKLIESENKQNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARFPGKSQEE 120
                 +DAKL E E +Q++H                              ++RFPGKS EE
Sbjct:    52 V---KDAKLKEIEEQQSRHAYSVAIATAAAAEAAVAAAQAAAEVVRLSALSRFPGKSMEE 108

Query:   121 IAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
             IA IKIQTAFRGY               KSL+QG  V+RQAT+TL+ MQTLARVQ QIR 
Sbjct:   109 IAAIKIQTAFRGYMARRALRALRGLVRLKSLVQGKCVRRQATSTLQSMQTLARVQYQIRE 168

Query:   181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
             RR+R+SE+ QA  RQLQQK  K+ +K      GE W+ +  S+E++EA + +KQ A +RR
Sbjct:   169 RRLRLSEDKQALTRQLQQKHNKDFDK-----TGENWNDSTLSREKVEANMLNKQVATMRR 223

Query:   241 ERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGS-TVDNYDL- 298
             E+ALAYAFS+Q   +NS+K  + TFMDPNNPHWGWSWLERWMAARP E+ S T DN +  
Sbjct:   224 EKALAYAFSHQNTWKNSTKMGSQTFMDPNNPHWGWSWLERWMAARPNENHSLTPDNAEKD 283

Query:   299 SSLKSATSRAMS 310
             SS +S  SRAMS
Sbjct:   284 SSARSVASRAMS 295

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2143503 iqd2 "AT5G03040" [Arabidopsis thaliana (taxid:3702)]

 Score = 561 (202.5 bits), Expect = 2.6e-54, P = 2.6e-54
 Identities = 134/323 (41%), Positives = 173/323 (53%)

Query:     1 MGKKGSWFSAVKKVLSSEXXXXXXXXXXXXXXXWFGKQKSSGAVLSSEENLAVSVPVPHP 60
             MGKK  WFS+VKK  S +                 G   +   V    +N+  S   P P
Sbjct:     1 MGKKAKWFSSVKKAFSPDSKKSKQKLAEGQN----GVISNPPVV----DNVRQSSSSPPP 52

Query:    61 CSADED---AKLIESENKQNKHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARFPGKS 117
               A  +   A++I   N+                                    RF GKS
Sbjct:    53 ALAPREVRVAEVIVERNRDLSPPSTADAVNVTATDVPVVPSSSAPGVVRRATPTRFAGKS 112

Query:   118 QEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQ 177
              EE A I IQT FRGY               K L++G  VKRQA  TL+CMQTL+RVQSQ
Sbjct:   113 NEEAAAILIQTIFRGYLARRALRAMRGLVRLKLLMEGSVVKRQAANTLKCMQTLSRVQSQ 172

Query:   178 IRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAA 237
             IRARRIRMSEENQA Q+QL QK  KE   L  L+ G+ W+ + +SKE++EA L  K EA 
Sbjct:   173 IRARRIRMSEENQARQKQLLQKHAKE---LAGLKNGDNWNDSIQSKEKVEANLLSKYEAT 229

Query:   238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESG----STV 293
             +RRERALAY++S+Q+  +N+SKS NP FMDP+NP WGWSWLERWMA RP ES     S  
Sbjct:   230 MRRERALAYSYSHQQNWKNNSKSGNPMFMDPSNPTWGWSWLERWMAGRPLESSEKEQSNS 289

Query:   294 DNYDLSSLKSATSRAMSIREISR 316
             +N + +S+K + +R  + + ++R
Sbjct:   290 NNDNAASVKGSINRNEAAKSLTR 312

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2066226 Iqd4 "AT2G26410" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 95/220 (43%), Positives = 136/220 (61%)

Query:   116 KSQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQ 175
             +S+EE A IKIQ A+R Y               KSL+QG  VKRQ    L  MQTL R+Q
Sbjct:   144 ESKEETAAIKIQNAYRCYTARRTLRALRGMARLKSLLQGKYVKRQMNAMLSSMQTLTRLQ 203

Query:   176 SQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQE 235
             +QI+ RR R+S EN+   R +QQK  ++ E  + L     +D + KSKEQI A+  +++E
Sbjct:   204 TQIQERRNRLSAENKTRHRLIQQKGHQK-ENHQNLVTAGNFDSSNKSKEQIVARSVNRKE 262

Query:   236 AAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWESGSTVDN 295
             A++RRERALAYA+S+Q+  RNSSK  + T MD N   WGWSWLERWMA+RPW++ S  D 
Sbjct:   263 ASVRRERALAYAYSHQQTWRNSSKLPHQTLMDTNTTDWGWSWLERWMASRPWDAESIDDQ 322

Query:   296 YDL-------SSLKSATSRAMSIREISRAYSRRDLNHDNK 328
               +       +S+KS+ +R+ + +  S++  +  +N+D K
Sbjct:   323 VSVKSSLKRENSIKSSPARSKTQKSASQSSIQWPVNNDTK 362

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2090409 IQD5 "AT3G22190" [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 77/176 (43%), Positives = 113/176 (64%)

Query:   116 KSQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQ 175
             +S+E  A  +IQTA+RG+               ++L++GH+V++QA  TLRCMQ L RVQ
Sbjct:    84 QSRENRAATRIQTAYRGFLARRALRALKGLVRLQALVRGHAVRKQAAVTLRCMQALVRVQ 143

Query:   176 SQIRARRIRMS-E-ENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHK 233
             +++RARR+R++ E E++  Q+ LQQ+   E    R  ++ E W  +  S EQI+AKL  +
Sbjct:   144 ARVRARRVRLALELESETSQQTLQQQLADEA---RVREIEEGWCDSIGSVEQIQAKLLKR 200

Query:   234 QEAAIRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWES 289
             QEAA +RERA+AYA ++Q        SA+  F  P+  +WGW+WLERWMA RPWE+
Sbjct:   201 QEAAAKRERAMAYALTHQWQAGTRLLSAHSGFQ-PDKNNWGWNWLERWMAVRPWEN 255

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2057459 IQD6 "AT2G26180" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
 Identities = 87/201 (43%), Positives = 119/201 (59%)

Query:   110 VARFPGKS----QEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTL 165
             V R P K     +EE A I+IQTAFRG+               ++L++G  V++QA  TL
Sbjct:    70 VLRAPPKDFKAVREEWAAIRIQTAFRGFLARRALRALKGIVRLQALVRGRQVRKQAAVTL 129

Query:   166 RCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQ 225
             RCMQ L RVQ+++RARR+RM+ E QA Q+ L +   K  + L+  +V E W     + + 
Sbjct:   130 RCMQALVRVQARVRARRVRMTVEGQAVQKLLDEHRTKS-DLLK--EVEEGWCDRKGTVDD 186

Query:   226 IEAKLQHKQEAAIRRERALAYAFSNQKMLRNSSKS---ANPTF-------MDPNNPHWGW 275
             I++KLQ +QE A +RERALAYA + QK  R+++ S    N +         D N+  WGW
Sbjct:   187 IKSKLQQRQEGAFKRERALAYALA-QKQWRSTTSSNLKTNSSISYLKSQEFDKNS--WGW 243

Query:   276 SWLERWMAARPWESG--STVD 294
             SWLERWMAARPWE+    TVD
Sbjct:   244 SWLERWMAARPWETRLMDTVD 264

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2134628 iqd17 "AT4G00820" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 3.2e-36, Sum P(2) = 3.2e-36
 Identities = 106/368 (28%), Positives = 178/368 (48%)

Query:   117 SQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQS 176
             ++E+ A + IQT FRGY               ++L++GH+V++QA  TLRCMQ L RVQS
Sbjct:   129 AREDYAAVVIQTGFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQS 188

Query:   177 QIRARRIRMSEENQ---AF---QRQLQQKCEKEIEKLRALQ-----VGEEWDHTAKSKEQ 225
             ++  +R R+S +     AF   Q  L+ +  +EI   R++      + E+WD    + E+
Sbjct:   189 RVLDQRKRLSHDGSRKSAFSDTQSVLESRYLQEISDRRSMSREGSSIAEDWDDRPHTIEE 248

Query:   226 IEAKLQHKQEAAIRRE--RALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMA 283
             ++A LQ +++ A+RRE   +++ AFS+Q      S S    + +   P     WL+RWMA
Sbjct:   249 VKAMLQQRRDNALRRESNNSISQAFSHQVRRTRGSYSTGDEY-EEERP----KWLDRWMA 303

Query:   284 ARPWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRRDLNHDNKDSPTAHKLXXXXXXX 343
             ++PW+  ++ D   +  +        S   ++R  SR   +      P++          
Sbjct:   304 SKPWDKRASTDQR-VPPVYKTVEIDTSQPYLTRGNSRTGASPSRSQRPSSPSRTSHHYQQ 362

Query:   344 XXXXXXXXXXXXXXXITGKVRPPSPKGSQWGGDGDSRSVFSVRSE------HYRRHSIAG 397
                            I  ++R  SP+  +     D RS ++  S       +Y   + +G
Sbjct:   363 HNFSSATPSPAKSRPI--QIRSASPRIQR-----DDRSAYNYTSNTPSLRSNYSFTARSG 415

Query:   398 SSMGDNESLASSPSVPSYMAPTQSTKARSRGTS-PLGLNGTPDKRSLGSAKKRLSFPSSP 456
              S+    + A++ ++P+YMA T+S KAR R  S P     TP+K  + SA+KRLSFP  P
Sbjct:   416 YSVCTTTTTATNAALPNYMAITESAKARIRSQSAPRQRPSTPEKERISSARKRLSFPVPP 475

Query:   457 AGPRRHSG 464
               P++  G
Sbjct:   476 L-PQQMDG 482

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2200945 IQD18 "AT1G01110" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.4e-30, Sum P(2) = 1.4e-30
 Identities = 101/364 (27%), Positives = 168/364 (46%)

Query:   117 SQEEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQS 176
             ++E  A + IQT+FRGY               ++L++GH+V++QA  TLRCMQ L RVQS
Sbjct:   118 ARENYAAVVIQTSFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQS 177

Query:   177 QIRARRIRMSEENQ---AFQ--------RQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQ 225
             ++  +R R+S +     AF         R LQ   +++          E+WD    + + 
Sbjct:   178 RVLDQRKRLSHDGSRKSAFSDSHAVFESRYLQDLSDRQSMSREGSSAAEDWDDRPHTIDA 237

Query:   226 IEAKLQHKQEAAIRRERA-LAYAFSNQKMLRN----SSKSANPTFMDPNNPHWGWSWLER 280
             ++  LQ +++ A+R ++  L+ AFS QKM R     S++  +   ++   P     WL+R
Sbjct:   238 VKVMLQRRRDTALRHDKTNLSQAFS-QKMWRTVGNQSTEGHHEVELEEERP----KWLDR 292

Query:   281 WMAARPWESGSTVDNYDLSSLKSATS-RAMSIREISRAYSRRDLNHDNKDS-PTAHKLXX 338
             WMA RPW+  ++      +S+    S + + I + S+ YSR      ++   P++     
Sbjct:   293 WMATRPWDKRAS----SRASVDQRVSVKTVEI-DTSQPYSRTGAGSPSRGQRPSSPSRTS 347

Query:   339 XXXXXXXXXXXXXXXXXXXXITGKVRPPSPKGSQWGGDGDSRSVFSVRSEHYRRHS---- 394
                                 I   +R  SP+  +   +   R+ +S  S      S    
Sbjct:   348 HHYQSRNNFSATPSPAKSRPIL--IRSASPRCQRDPREDRDRAAYSYTSNTPSLRSNYSF 405

Query:   395 IAGSSMGDNESLASSPSV-PSYMAPTQSTKARSRGTS-PLGLNGTPDKRSLGSAKKRLSF 452
              A S    + ++ ++ S+ P+YMA T+S KAR R  S P     TP++   G  KKRLS+
Sbjct:   406 TARSGCSISTTMVNNASLLPNYMASTESAKARIRSHSAPRQRPSTPERDRAGLVKKRLSY 465

Query:   453 PSSP 456
             P  P
Sbjct:   466 PVPP 469

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2097478 IQD13 "AT3G59690" [Arabidopsis thaliana (taxid:3702)]

 Score = 263 (97.6 bits), Expect = 6.2e-30, Sum P(3) = 6.2e-30
 Identities = 59/157 (37%), Positives = 95/157 (60%)

Query:   124 IKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRI 183
             IKIQ AFRGY               + +++GHSVKRQ    ++ MQ L RVQ+Q+++RRI
Sbjct:   173 IKIQAAFRGYMARRSFRALKGLVRLQGVVRGHSVKRQTMNAMKYMQLLVRVQTQVQSRRI 232

Query:   184 RMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRRERA 243
             +M E N+A       + +K+  KL + ++ ++WD +  +KE+ + +L  K +A I+RER+
Sbjct:   233 QMLE-NRA-------RNDKDDTKLVSSRMSDDWDDSVLTKEEKDVRLHRKIDAMIKRERS 284

Query:   244 LAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLER 280
             +AYA+S+Q + +NS KSA         P W W+W++R
Sbjct:   285 MAYAYSHQ-LWKNSPKSAQD-IRTSGFPLW-WNWVDR 318

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2043959 IQD14 "AT2G43680" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 7.5e-30, Sum P(3) = 7.5e-30
 Identities = 60/163 (36%), Positives = 96/163 (58%)

Query:   119 EEIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
             +  +  KIQ AFRGY               + +++G+SVKRQ    ++ MQ + RVQSQI
Sbjct:   322 QHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQI 381

Query:   179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEE-WDHTAKSKEQIEAKLQHKQEAA 237
             ++RRI+M E NQA       + EK+  K  A + G + WD +  +KE+ +++ Q K +A 
Sbjct:   382 QSRRIKMLE-NQA-------QVEKDEAKWAASEAGNDNWDDSVLTKEERDSRSQRKTDAI 433

Query:   238 IRRERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLER 280
             I+RER++AYA+S +K+ +NS KS      + + P W W+W++R
Sbjct:   434 IKRERSMAYAYS-RKLWKNSPKSTQD---NRSFPQW-WNWVDR 471

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2086385 IQD10 "AT3G15050" [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 69/169 (40%), Positives = 102/169 (60%)

Query:   120 EIAVIKIQTAFRGYXXXXXXXXXXXXXXXKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
             E+AVI+IQ AFR +                SLIQGH+V  Q +T L  + +   +Q+QIR
Sbjct:    50 EVAVIRIQKAFRAFKARKRLCSLKSARRFNSLIQGHTVMNQTSTALNVIHSWYDIQNQIR 109

Query:   180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
             ARR+ M  + +   ++L+ + + EI KL  L+V  EW   +++ E+I AK+Q K+EA ++
Sbjct:   110 ARRLYMVTQGRLQHKRLENRLKLEI-KLHELEV--EWCGGSETMEEILAKIQQKEEATVK 166

Query:   240 RERALAYAFSNQKMLRNSSKSANPTFMDPNNPHWGWSWLERWMAARPWE 288
             RERA+AYAFS+Q    N+++       +     WGWSW ERW+AARPWE
Sbjct:   167 RERAMAYAFSHQ-WRANATQYLGQASFNLGKESWGWSWKERWIAARPWE 214

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018236001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (466 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	484
pfam13178	105	pfam13178, DUF4005, Protein of unknown function (D	2e-09
COG1322	448	COG1322, COG1322, Predicted nuclease of restrictio	0.001
smart00015	23	smart00015, IQ, Calmodulin-binding motif	0.002
pfam00612	21	pfam00612, IQ, IQ calmodulin-binding motif	0.003

>gnl|CDD|221960 pfam13178, DUF4005, Protein of unknown function (DUF4005)

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 31/82 (37%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 384 SVRSEHYRRHSIAGSSMGDNESLASSPSVPSYMAPTQSTKARSRGTS-PLGLNGTPDKRS 442
           S         S    S  D+ S  SSPS+P+YMA T+S KA+ R  S P     T ++ S
Sbjct: 9   SSSKSSRSSPSNPTKSERDDNSSTSSPSLPNYMAATESAKAKVRSQSAPRQRPETEERES 68

Query: 443 LGSAKKRLSFPSSPAGPRRHSG 464
             SA KRLS P S +     S 
Sbjct: 69  GSSATKRLSLPVSSSSGGSSSS 90

This is a C-terminal region of plant IQ-containing putative calmodulin-binding proteins. Length = 105

>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 29/158 (18%), Positives = 61/158 (38%), Gaps = 16/158 (10%)

Query: 95  VAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLA-----RRALRALRGL---- 145
           V  A     ++RL  + +  G+     AV++       + A     R   R+L+ L    
Sbjct: 15  VNLAFIRQLLLRLGRLEQMLGELA---AVLEQLLLLLAFRAEAEQLRTFARSLQALNLEL 71

Query: 146 -VRLKSLIQGHSVKRQAT-TTLRCM-QTLARVQSQIRARRIRMSEENQAFQRQLQQKCEK 202
              L  L      +   +   L+ + ++LA++ S+ +     + EE      +L Q+  K
Sbjct: 72  IQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLK 131

Query: 203 EIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           ++ K    +V E++    + +    A+ +      I R
Sbjct: 132 QLLKPLR-EVLEKFREQLEQRIHESAEERSTLLEEIDR 168

Length = 448

>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif

 Score = 35.4 bits (83), Expect = 0.002
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 118 QEEIAVIKIQTAFRGYLARRALR 140
           +   A I IQ A+RGYLAR+  +
Sbjct: 1   RLTRAAIIIQAAWRGYLARKRYK 23

Short calmodulin-binding motif containing conserved Ile and Gln residues. Length = 23

>gnl|CDD|201341 pfam00612, IQ, IQ calmodulin-binding motif

 Score = 35.0 bits (82), Expect = 0.003
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 122 AVIKIQTAFRGYLARRALR 140
           A IKIQ A+RGYLAR+  +
Sbjct: 3   AAIKIQAAWRGYLARKRYK 21

Calmodulin-binding motif. Length = 21

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
PF13178	102	DUF4005: Protein of unknown function (DUF4005)	99.52
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	97.89
smart00015	26	IQ Short calmodulin-binding motif containing conse	97.38
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	97.14
KOG0520	975	consensus Uncharacterized conserved protein, conta	96.53
PTZ00014	821	myosin-A; Provisional	95.47
KOG0160	862	consensus Myosin class V heavy chain [Cytoskeleton	95.28
COG5022	1463	Myosin heavy chain [Cytoskeleton]	92.5
KOG0520	975	consensus Uncharacterized conserved protein, conta	90.23
KOG2128	1401	consensus Ras GTPase-activating protein family - I	90.22
PF00612	21	IQ: IQ calmodulin-binding motif; InterPro: IPR0000	89.7
KOG0164	1001	consensus Myosin class I heavy chain [Cytoskeleton	87.91
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	82.79
smart00015	26	IQ Short calmodulin-binding motif containing conse	81.46

>PF13178 DUF4005: Protein of unknown function (DUF4005)

Probab=99.52  E-value=1.7e-14  Score=125.36  Aligned_cols=57  Identities=44%  Similarity=0.633  Sum_probs=48.8

Q ss_pred             CCCCCCCCccccccccCCCCCCC-CCCCCCCCcCcccCcccCCCCCCCCCCCCCCCCC
Q 011478          412 VPSYMAPTQSTKARSRGTSPLGL-NGTPDKRSLGSAKKRLSFPSSPAGPRRHSGPPRV  468 (484)
Q Consensus       412 ~PsYMa~TeSAKAK~R~qS~p~~-~~t~e~~~~~~~kkRlS~p~sp~~~rr~s~~pk~  468 (484)
                      +|||||+|||||||+|+||+|++ ++++|......++||||||.+..+....+..++.
T Consensus        34 ~PsYMa~TeSakAK~RsqSaPrqR~~~~~~~~~~~~~kR~S~~~~~~~~~~~~~~~~~   91 (102)
T PF13178_consen   34 LPSYMAATESAKAKARSQSAPRQRPGTPERAEKQSSKKRLSLPGSSNSGSSSSRSPRT   91 (102)
T ss_pred             CCCccchhhhhhhhhhccCCcccCCCccccccccccccccccCCCCCCCcCCCCCCcc
Confidence            89999999999999999999999 7777765556789999999887777777766654

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=97.89  E-value=1.1e-05  Score=51.43  Aligned_cols=21  Identities=48%  Similarity=0.751  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHH
Q 011478          120 EIAVIKIQTAFRGYLARRALR  140 (484)
Q Consensus       120 e~AAI~IQsafRGylARralr  140 (484)
                      ..|||.||+.||||++|+.|+
T Consensus         1 ~~aai~iQ~~~R~~~~Rk~~k   21 (21)
T PF00612_consen    1 RKAAIIIQSYWRGYLARKRYK   21 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcC
Confidence            368999999999999999985

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=97.38  E-value=0.00013  Score=48.54  Aligned_cols=22  Identities=50%  Similarity=0.718  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHH
Q 011478          119 EEIAVIKIQTAFRGYLARRALR  140 (484)
Q Consensus       119 ee~AAI~IQsafRGylARralr  140 (484)
                      ++.+|+.||+.||||++|+.|+
T Consensus         2 ~~~aa~~IQa~~Rg~~~r~~y~   23 (26)
T smart00015        2 LTRAAIIIQAAWRGYLARKRYK   23 (26)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            5789999999999999999984

Calmodulin-binding motif.

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=97.14  E-value=0.0007  Score=77.58  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=45.6

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       118 ree~AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      ....+++.||+.||||+.|+.|.. .++++-+|+++||.++|+.   ++ ...|++.+|..+|+...|+
T Consensus       671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~---~~-~~~aai~~q~~~r~~~~r~  735 (862)
T KOG0160|consen  671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRE---TE-REAAAIGIQKECRSYLNRR  735 (862)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh---hH-HHHHHHHhHHHHHHHHHHH
Confidence            344578889999999999999999 4558899999999999981   11 3344444444444444333

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=96.53  E-value=0.0017  Score=74.98  Aligned_cols=73  Identities=25%  Similarity=0.399  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHH-HHHHHhhhcccchhhhhhhh------H-HhhhhHHHHHHHHHHHHHhhhhhh
Q 011478          118 QEEIAVIKIQTAFRGYLARRALRALRG-LVRLKSLIQGHSVKRQATTT------L-RCMQTLARVQSQIRARRIRMSEEN  189 (484)
Q Consensus       118 ree~AAI~IQsafRGylARralraLkg-lVrLQAlvRG~~vRrqa~~t------l-r~mqAavrIQs~vR~rr~R~~~e~  189 (484)
                      ..-.||..||.-||||+.|+.|..++. +|++|+-|||+.+|++|...      + +-+-++-++|+.+|+++.|...|.
T Consensus       808 ~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~  887 (975)
T KOG0520|consen  808 SDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE  887 (975)
T ss_pred             cchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence            455789999999999999999999666 99999999999999999622      2 245677789999999988877554


Q ss_pred             H
Q 011478          190 Q  190 (484)
Q Consensus       190 ~  190 (484)
                      +
T Consensus       888 ~  888 (975)
T KOG0520|consen  888 Q  888 (975)
T ss_pred             c
Confidence            3

>PTZ00014 myosin-A; Provisional

Probab=95.47  E-value=0.012  Score=67.91  Aligned_cols=40  Identities=20%  Similarity=0.339  Sum_probs=35.6

Q ss_pred             HHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhh
Q 011478          122 AVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       122 AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa  161 (484)
                      .++.||++||||++|+.|.. +.++++||+.+||+++++..
T Consensus       779 ~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~  819 (821)
T PTZ00014        779 LVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI  819 (821)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            68899999999999999998 66699999999999988764

>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]

Probab=95.28  E-value=0.033  Score=64.40  Aligned_cols=65  Identities=28%  Similarity=0.238  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       118 ree~AAI~IQsafRGylARralraLkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      ....+++.||+.+||+++|+........+.+|..+|+++.|+++.   ....+++.+|+.+|+..+|.
T Consensus       694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y~---~~~~~~~~~qs~~r~~~~r~  758 (862)
T KOG0160|consen  694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRYR---ALIPASITIQSGVRAMLARN  758 (862)
T ss_pred             HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence            567899999999999999982223445789999999999999984   46778999999999999998

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=92.50  E-value=0.24  Score=59.86  Aligned_cols=65  Identities=17%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHH
Q 011478          118 QEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRI  183 (484)
Q Consensus       118 ree~AAI~IQsafRGylARralra-LkglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~  183 (484)
                      .-...+++||++|||++.||.|.. ++.+..+|.+.+|..+++..... --.....++|..++...-
T Consensus       743 ~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  808 (1463)
T COG5022         743 KLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYE-LKWRLFIKLQPLLSLLGS  808 (1463)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccc-hHHHhHHHhhHHhHHHhh
Confidence            345689999999999999998887 88888899999999888766322 234455666666655443

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=90.23  E-value=0.77  Score=53.96  Aligned_cols=63  Identities=29%  Similarity=0.424  Sum_probs=44.8

Q ss_pred             HHHHHHHHhhhhhhHHHHHHH-------HH-H---HHHHhhhcccchhhhhh----------------------hhHHhh
Q 011478          122 AVIKIQTAFRGYLARRALRAL-------RG-L---VRLKSLIQGHSVKRQAT----------------------TTLRCM  168 (484)
Q Consensus       122 AAI~IQsafRGylARralraL-------kg-l---VrLQAlvRG~~vRrqa~----------------------~tlr~m  168 (484)
                      =+|+||+++|||..|+.|+.|       +- +   -++|.-+||+..|....                      .+.+--
T Consensus       835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~  914 (975)
T KOG0520|consen  835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT  914 (975)
T ss_pred             ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            589999999999999999862       11 1   23377778876665432                      222334


Q ss_pred             hhHHHHHHHHHHHHHh
Q 011478          169 QTLARVQSQIRARRIR  184 (484)
Q Consensus       169 qAavrIQs~vR~rr~R  184 (484)
                      +|+++||+.+|....+
T Consensus       915 ~A~~~VQsm~rs~~a~  930 (975)
T KOG0520|consen  915 RAVVRVQSMFRSPKAQ  930 (975)
T ss_pred             HHHHHHHHHhcCHHHH
Confidence            7899999999887766

>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]

Probab=90.22  E-value=0.41  Score=57.63  Aligned_cols=68  Identities=25%  Similarity=0.375  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHhhhhhh---HHHH-HH-HHHHHHHHhhhcccchhhhhhhh----HHhhhhHHHHHHHHHHHHHhhh
Q 011478          119 EEIAVIKIQTAFRGYLA---RRAL-RA-LRGLVRLKSLIQGHSVKRQATTT----LRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       119 ee~AAI~IQsafRGylA---Rral-ra-LkglVrLQAlvRG~~vRrqa~~t----lr~mqAavrIQs~vR~rr~R~~  186 (484)
                      ..-..+.||.++|||+.   +..+ .. .+-+|.+|++.||+++|+.+...    ..||...+.||+.+|++..|.-
T Consensus       564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~  640 (1401)
T KOG2128|consen  564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKD  640 (1401)
T ss_pred             cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchH
Confidence            44467899999999993   2222 22 66799999999999999998733    3689999999999999988764

>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K

Probab=89.70  E-value=0.17  Score=32.10  Aligned_cols=19  Identities=11%  Similarity=0.282  Sum_probs=14.6

Q ss_pred             HHHHHHHhhhcccchhhhh
Q 011478          143 RGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       143 kglVrLQAlvRG~~vRrqa  161 (484)
                      +.+|.||+.+||+++|+++
T Consensus         2 ~aai~iQ~~~R~~~~Rk~~   20 (21)
T PF00612_consen    2 KAAIIIQSYWRGYLARKRY   20 (21)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            4577888888888888775

The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....

>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]

Probab=87.91  E-value=1.1  Score=51.37  Aligned_cols=54  Identities=20%  Similarity=0.337  Sum_probs=38.2

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHH-HHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          121 IAVIKIQTAFRGYLARRALRALRGL-VRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       121 ~AAI~IQsafRGylARralraLkgl-VrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      .-++.||.+|||+++|..|+.++.. +.++ ..|.+-+          -..+..||..+|+.+.++
T Consensus       697 ~lvtllQK~~RG~~~R~ry~rmka~~~ii~-wyR~~K~----------ks~v~el~~~~rg~k~~r  751 (1001)
T KOG0164|consen  697 SLVTLLQKAWRGWLARQRYRRMKASATIIR-WYRRYKL----------KSYVQELQRRFRGAKQMR  751 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH----------HHHHHHHHHHHHhhhhcc
Confidence            4689999999999999999997774 4444 4442222          234556888888877655

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=82.79  E-value=14  Score=43.09  Aligned_cols=34  Identities=35%  Similarity=0.642  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhh
Q 011478          119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI  152 (484)
Q Consensus       119 ee~AAI~IQsafRGylARralra-LkglVrLQAlv  152 (484)
                      ...+.+++|+..||||+|++++- +-|++++-+|.
T Consensus       812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~~~l~  846 (1259)
T KOG0163|consen  812 RAECVLKAQRIARGYLARKRHRPRIAGIRKINALL  846 (1259)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHH
Confidence            45678999999999999999987 77777776664

>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues

Probab=81.46  E-value=0.77  Score=30.42  Aligned_cols=19  Identities=11%  Similarity=0.277  Sum_probs=15.9

Q ss_pred             HHHHHHHhhhcccchhhhh
Q 011478          143 RGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       143 kglVrLQAlvRG~~vRrqa  161 (484)
                      +.++.||+.+||+++|+++
T Consensus         4 ~aa~~IQa~~Rg~~~r~~y   22 (26)
T smart00015        4 RAAIIIQAAWRGYLARKRY   22 (26)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4578889999999998886

Calmodulin-binding motif.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	1e-09
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-08
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-05
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-07
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 12/145 (8%), Positives = 42/145 (28%), Gaps = 7/145 (4%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQATTTLRCMQTLARV 174
               ++  +Q+    +   +          +  L+++      K +       +      
Sbjct: 785 DFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLT 844

Query: 175 QSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQ 234
            ++I +    + +  Q     L+ + +++ +    LQ  +        K +  A  +   
Sbjct: 845 PNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYNR--ILKKLENWATTKSVY 900

Query: 235 EAAIRRERALAYAFSNQKMLRNSSK 259
             +     ++    +  K L     
Sbjct: 901 LGSNETGDSITAVQAKLKNLEAFDG 925

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 15/144 (10%), Positives = 48/144 (33%), Gaps = 7/144 (4%)

Query: 123 VIKIQTAFRGYLARRA----LRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           + +     +    ++A          +  ++S +  H  + + T      Q ++ +++  
Sbjct: 764 LKRANELVQWINDKQASLESRDFGDSIESVQSFMNAH-KEYKKTEKPPKGQEVSELEAIY 822

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
            + + ++    +            EI+   +    E+ +       +IE K Q K    +
Sbjct: 823 NSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL--EKAEQEHAEALRIELKRQKKIAVLL 880

Query: 239 RRERALAYAFSNQKMLRNSSKSAN 262
           ++   +     N    ++    +N
Sbjct: 881 QKYNRILKKLENWATTKSVYLGSN 904

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 13/124 (10%), Positives = 38/124 (30%), Gaps = 1/124 (0%)

Query: 120 EIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIR 179
              V +++  +     +  L      V    L         +       +    ++ +++
Sbjct: 812 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 871

Query: 180 ARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIR 239
            R+ +++   Q + R L++       K   L   E  D     + +++       E    
Sbjct: 872 -RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSL 930

Query: 240 RERA 243
             ++
Sbjct: 931 EGQS 934

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 25/152 (16%), Positives = 53/152 (34%), Gaps = 10/152 (6%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS 176
           +   A I IQ   R Y+ R+  + +R   + L++L++G+ + R     +        +Q 
Sbjct: 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGY-LVRNKYQMMLREHKSIIIQK 872

Query: 177 QIRARRIRMSEENQAFQRQLQQKC------EKEIEKLRALQVGEEWDHTAKSKEQIEAKL 230
            +R    R+            Q C      ++E++KL+        +   K    +E K+
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKI 930

Query: 231 QHKQEAAIRRERALAYAFSNQKMLRNSSKSAN 262
              Q     + +           L  +  +  
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 33/151 (21%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 103 EVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLIQGHSVKRQA 161
            ++R   V         E   I IQ   RG+LAR      L+ +V L+   +    KR+ 
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE- 905

Query: 162 TTTLRCMQTLARVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAK 221
              L+ ++  AR   + +   I +  EN+    QLQ+K +++ ++ ++L   E+ ++   
Sbjct: 906 ---LKKLKIEARSVERYKKLHIGL--ENK--IMQLQRKIDEQNKEYKSLL--EKMNNLEI 956

Query: 222 SKEQIEAKLQHKQEAAIRRERALAYAFSNQK 252
           +      KL+      +R     A   +N+ 
Sbjct: 957 TYSTETEKLR-SDVERLRMSEEEAKNATNRV 986

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 2/135 (1%)

Query: 122 AVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRA 180
           A I+IQ   RG+L R+    +R   + ++  ++GH  +  A T LR  +    +Q   R 
Sbjct: 770 ACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRM 828

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
             +R   +         Q   +        Q+      +   ++ +   L         +
Sbjct: 829 YVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLK 888

Query: 241 ERALAYAFSNQKMLR 255
                     + M +
Sbjct: 889 AIVYLQCCYRRMMAK 903

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 5/148 (3%)

Query: 112 RFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTL 171
            F  + Q+  ++  IQ   R ++       +     +  L++    + +       +Q  
Sbjct: 810 AFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEELQRT 869

Query: 172 ARVQSQIRARRIRMSEENQAFQRQ---LQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEA 228
              Q +  A    + +++     +   LQ+K + E E     +  E     A  K+++E 
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE--EMRVRLAAKKQELEE 927

Query: 229 KLQHKQEAAIRRERALAYAFSNQKMLRN 256
            L   +      E       + +K ++ 
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQ 955

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 3/139 (2%)

Query: 122 AVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQS-QIRA 180
            +I  Q   RGYLAR+A    +  +     IQ +            M     +       
Sbjct: 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVT 853

Query: 181 RRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAIRR 240
           R+    +      ++ +++ +K   +L+ L+  ++     + K  ++ KLQ + E     
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELE--QKHTQLCEEKNLLQEKLQAETELYAEA 911

Query: 241 ERALAYAFSNQKMLRNSSK 259
           E       + ++ L     
Sbjct: 912 EEMRVRLAAKKQELEEILH 930

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 14/150 (9%), Positives = 43/150 (28%), Gaps = 11/150 (7%)

Query: 122 AVIKIQTAFRGYLARRALRALRGLVRLKSLIQGHSV---------KRQATTTLRCMQTLA 172
              K     R     + +   +  +  +                 + + T      Q ++
Sbjct: 765 EQTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVS 824

Query: 173 RVQSQIRARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQH 232
            +++   + + ++    +            EI+   +    E+ +       +IE K Q 
Sbjct: 825 ELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSAL--EKAEQEHAEALRIELKRQK 882

Query: 233 KQEAAIRRERALAYAFSNQKMLRNSSKSAN 262
           K    +++   +     N    ++    +N
Sbjct: 883 KIAVLLQKYNRILKKLENWATTKSVYLGSN 912

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 11/124 (8%), Positives = 39/124 (31%), Gaps = 9/124 (7%)

Query: 122 AVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQI 178
           ++  +Q+    +   +          +  L+++      K +       +       ++I
Sbjct: 797 SIESVQSFMNAHKEYKKTEKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEI 856

Query: 179 RARRIRMSEENQAFQRQLQQKCEKEIEKLRALQVGEEWDHTAKSKEQIEAKLQHKQEAAI 238
            +    + +  Q     L+ + +++ +    LQ  +      +  +++E     K     
Sbjct: 857 DSTWSALEKAEQEHAEALRIELKRQKKIAVLLQ--KYN----RILKKLENWATTKSVYLG 910

Query: 239 RRER 242
             E 
Sbjct: 911 SNET 914

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 57/421 (13%), Positives = 102/421 (24%), Gaps = 124/421 (29%)

Query: 1   MGKKGSWFSAVKKVLSSEQ-KDKKDQKTIKLKKKW--FGKQKSSGAVLSSEENLAV---- 53
           +   G      K  ++ +     K Q  +  K  W       S   VL   + L      
Sbjct: 158 VLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 54  --------SVPVPHPCSADEDAKLIESENKQNKHAYTVAL-----ATAVAA--------- 91
                   S  +     + +       ++K  ++   V L     A A  A         
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILL 270

Query: 92  ---EAAVAAAQAAAEVVRLTAVARFPGKSQEEIAVIKIQTAFRGYLARRA--LR--ALRG 144
                 V    +AA    ++        + +E+  +        YL  R   L    L  
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLDCRPQDLPREVLTT 325

Query: 145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQ--AFQRQLQQKC-- 200
             R  S+I   S++    T          V        I  S      A  R++  +   
Sbjct: 326 NPRRLSII-AESIRDGLATW----DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 201 ------------------------EKEIEKLRALQVGEEWDHTAKSKE--------QIEA 228
                                      + KL    + E+       KE         +E 
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLEL 435

Query: 229 KLQHKQEAAIRRERALAYAFSNQKMLRNSSKSANPTF----------MDPNNPHWGWSWL 278
           K++ + E A+ R     Y     K   +                   +         +  
Sbjct: 436 KVKLENEYALHRSIVDHYNI--PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 279 E------RWMAAR------PWESGSTVDNYDLSSLKSATSRAMSIREISRAYSRR--DLN 324
                  R++  +       W +  ++ N  L  LK        I +    Y R    + 
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFYKPY---ICDNDPKYERLVNAIL 549

Query: 325 H 325
            
Sbjct: 550 D 550

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	98.89
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	98.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.43
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	98.42
2l53_B	31	CAM, voltage-gated sodium channel type V alpha iso	97.99
2kxw_B	27	Sodium channel protein type 2 subunit alpha; actio	97.88
1n2d_C	48	IQ2 and IQ3 motifs from MYO2P, A class V myosin; p	97.49
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.55
2ix7_C	58	Myosin-5A; contractIle protein/metal binding, acti	96.52
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	96.42
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	96.15
1wdc_A	64	Scallop myosin; calcium binding protein, muscle pr	96.04
3gn4_A	148	Myosin-VI; unconventional myosin, motility, lever	96.02
2bl0_A	63	Major plasmodial myosin heavy chain; muscle protei	95.96
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	94.92
4dck_A	168	Sodium channel protein type 5 subunit alpha; IQ-mo	92.47
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	90.73
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	86.11
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	85.93

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=98.89  E-value=1.3e-09  Score=83.63  Aligned_cols=53  Identities=23%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHhhhcccchhhhhhhhHHhhhhH
Q 011478          118 QEEIAVIKIQTAFRGYLARRALRALR-GLVRLKSLIQGHSVKRQATTTLRCMQTL  171 (484)
Q Consensus       118 ree~AAI~IQsafRGylARralraLk-glVrLQAlvRG~~vRrqa~~tlr~mqAa  171 (484)
                      +.+.|||.||+.||||++|+.|..++ +++.||+.+||+++|+.+.. ++...|+
T Consensus         3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~~-~r~~~aA   56 (58)
T 2ix7_C            3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAKF-LRRTKAA   56 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCc
Confidence            56789999999999999999999966 69999999999999999843 4444443

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=98.61  E-value=2.7e-08  Score=73.48  Aligned_cols=42  Identities=19%  Similarity=0.376  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHhhhcccchhhhh
Q 011478          120 EIAVIKIQTAFRGYLARRALRALR---GLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       120 e~AAI~IQsafRGylARralraLk---glVrLQAlvRG~~vRrqa  161 (484)
                      ..|||.||+.||||++|+.|..++   ..+.||+.+||+++|+.+
T Consensus         3 r~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y   47 (48)
T 1n2d_C            3 SQAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV   47 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            358999999999999999998844   688889999999888865

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.43  E-value=2.5e-07  Score=106.35  Aligned_cols=67  Identities=27%  Similarity=0.409  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhhh
Q 011478          120 EIAVIKIQTAFRGYLARRALRAL-RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMSE  187 (484)
Q Consensus       120 e~AAI~IQsafRGylARralraL-kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~~  187 (484)
                      ..||+.||++||||++|+.|+.+ .+++.||+.+||+++|+.+. .++...|++.||+.+|++.+|+.-
T Consensus       768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~lr~~~AAi~IQs~~Rg~~~Rk~y  835 (1080)
T 2dfs_A          768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYAT-FLRRTRAAIIIQKFQRMYVVRKRY  835 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhccc-ccccchhHHHHHHHHhhHHHHHHH
Confidence            57999999999999999999995 45899999999999999984 577889999999999999998753

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=98.42  E-value=1.8e-07  Score=107.60  Aligned_cols=69  Identities=20%  Similarity=0.287  Sum_probs=54.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHHH-HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478          117 SQEEIAVIKIQTAFRGYLARRALRAL-RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       117 ~ree~AAI~IQsafRGylARralraL-kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~  186 (484)
                      .+++.||++||+.||||++|+.|..+ .+++.||+.+||+++|+++.. ++...+++.||+.+|+...|..
T Consensus       813 lr~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~~-lr~~~aav~IQ~~~Rg~l~R~~  882 (1080)
T 2dfs_A          813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQM-MLREHKSIIIQKHVRGWLARVH  882 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTHHHHH
T ss_pred             cccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999984 458999999999999998843 4555667777777777666654

>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}

Probab=97.99  E-value=2.6e-06  Score=58.90  Aligned_cols=24  Identities=42%  Similarity=0.654  Sum_probs=21.8

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHH
Q 011478          117 SQEEIAVIKIQTAFRGYLARRALR  140 (484)
Q Consensus       117 ~ree~AAI~IQsafRGylARralr  140 (484)
                      .+||.||+.||.|||+||.|+.+.
T Consensus         3 k~Ee~aA~vIQrA~R~yl~rr~~~   26 (31)
T 2l53_B            3 GSEEVSAMVIQRAFRRHLLQRSLK   26 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhc
Confidence            579999999999999999998764

>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}

Probab=97.88  E-value=3.8e-06  Score=56.41  Aligned_cols=23  Identities=43%  Similarity=0.732  Sum_probs=20.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHH
Q 011478          117 SQEEIAVIKIQTAFRGYLARRAL  139 (484)
Q Consensus       117 ~ree~AAI~IQsafRGylARral  139 (484)
                      .+||.||+.||.|||+||.|+.+
T Consensus         3 k~Ee~aA~vIQrA~R~yl~~~~~   25 (27)
T 2kxw_B            3 KQEEVSAIVIQRAYRRYLLKQKV   25 (27)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Confidence            47999999999999999998753

>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}

Probab=97.49  E-value=0.00011  Score=53.96  Aligned_cols=42  Identities=17%  Similarity=0.274  Sum_probs=36.9

Q ss_pred             HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       143 kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      +.++.||+.+||+++|+++. .++...+++.||+.+||..+|.
T Consensus         4 ~a~i~iQ~~~Rg~l~R~~~~-~~~~~~aai~IQ~~~Rg~~~Rk   45 (48)
T 1n2d_C            4 QAIKYLQNNIKGFIIRQRVN-DEMKVNCATLLQAAYRGHSIRA   45 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence            46899999999999999994 4666779999999999998875

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.55  E-value=0.0024  Score=49.74  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHH
Q 011478          120 EIAVIKIQTAFRGYLARRALRA  141 (484)
Q Consensus       120 e~AAI~IQsafRGylARralra  141 (484)
                      ...++.||+..|||++|+.|..
T Consensus         6 ~~i~t~~Qa~~RG~l~R~~~~k   27 (64)
T 1wdc_A            6 SKIISMFQAHIRGYLIRKAYKK   27 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777777777766665

>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}

Probab=96.52  E-value=0.0023  Score=48.65  Aligned_cols=41  Identities=17%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       143 kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~  186 (484)
                      ..++.||+.+||+++|+.+.   +...+++.||+.+||+.+|..
T Consensus         6 ~aai~IQ~~~Rg~~~Rk~~~---~~r~aai~IQ~~~Rg~~aR~~   46 (58)
T 2ix7_C            6 AACIRIQKTIRGWLLRKRYL---CMQRAAITVQRYVRGYQARCY   46 (58)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999994   344699999999999988874

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=96.42  E-value=0.0022  Score=49.88  Aligned_cols=21  Identities=33%  Similarity=0.523  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhhhhhhHHHHHH
Q 011478          121 IAVIKIQTAFRGYLARRALRA  141 (484)
Q Consensus       121 ~AAI~IQsafRGylARralra  141 (484)
                      ..++.||+..|||++|+.|..
T Consensus         5 ~i~t~~Qa~~RG~l~R~~~~k   25 (63)
T 2bl0_A            5 EIVKVVQAAARGWVERKHFRQ   25 (63)
T ss_dssp             HHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            345666666666666666654

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=96.15  E-value=0.003  Score=71.16  Aligned_cols=42  Identities=31%  Similarity=0.406  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHhhhcccchhhhh
Q 011478          120 EIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       120 e~AAI~IQsafRGylARralraL----kglVrLQAlvRG~~vRrqa  161 (484)
                      ..+|+.||+++|||++|+.|+.+    ..++.||..+||+++||..
T Consensus       779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~  824 (837)
T 1kk8_A          779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  824 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence            34789999999999999999875    3577788888888877765

>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A

Probab=96.04  E-value=0.0061  Score=47.40  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      ++.||+.+||+++|+.+...+....|+..||..+|+...++
T Consensus         9 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~   49 (64)
T 1wdc_A            9 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR   49 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            78999999999999999888888889999999999987765

>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}

Probab=96.02  E-value=0.0054  Score=56.06  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHhhh
Q 011478          119 EEIAVIKIQTAFRGYLARRALRA-LRGLVRLKSLI  152 (484)
Q Consensus       119 ee~AAI~IQsafRGylARralra-LkglVrLQAlv  152 (484)
                      ...|+|+||++.||||+|+.++- +.|++++.+|.
T Consensus        44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~   78 (148)
T 3gn4_A           44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK   78 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            56789999999999999999998 79999998874

>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}

Probab=95.96  E-value=0.0053  Score=47.65  Aligned_cols=42  Identities=12%  Similarity=0.059  Sum_probs=37.7

Q ss_pred             HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478          145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~  186 (484)
                      ++.||+.+||+++|+.+...+....|+..||..+|+...++.
T Consensus         7 ~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr~   48 (63)
T 2bl0_A            7 VKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFKN   48 (63)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            689999999999999998888888899999999999887663

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=94.92  E-value=0.044  Score=63.58  Aligned_cols=41  Identities=22%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhhhhhHHHHHHH----HHHHHHHhhhcccchhhhh
Q 011478          121 IAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       121 ~AAI~IQsafRGylARralraL----kglVrLQAlvRG~~vRrqa  161 (484)
                      .+|+.||+.||||++|+.|..+    .+++.||..+||++.+|.+
T Consensus       793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~  837 (1184)
T 1i84_S          793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW  837 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5799999999999999999885    4689999999999998764

>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A

Probab=92.47  E-value=0.072  Score=49.51  Aligned_cols=25  Identities=40%  Similarity=0.627  Sum_probs=22.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhHHHHHH
Q 011478          117 SQEEIAVIKIQTAFRGYLARRALRA  141 (484)
Q Consensus       117 ~ree~AAI~IQsafRGylARralra  141 (484)
                      ..|+.||+.||.|||.|+.|+.++.
T Consensus       127 ~~e~~aA~~IQra~R~~~~r~~~~~  151 (168)
T 4dck_A          127 KHEEVSAMVIQRAFRRHLLQRSLKH  151 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccc
Confidence            4789999999999999999988775

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=90.73  E-value=0.26  Score=55.71  Aligned_cols=41  Identities=15%  Similarity=0.162  Sum_probs=36.4

Q ss_pred             HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          145 LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       145 lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      ++.||+.+||+++|+++...+....|++.||..+|++..|+
T Consensus       782 ~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r  822 (837)
T 1kk8_A          782 ISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR  822 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            68899999999999999766666789999999999998775

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=86.11  E-value=0.4  Score=53.84  Aligned_cols=25  Identities=36%  Similarity=0.627  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHH
Q 011478          120 EIAVIKIQTAFRGYLARRALRALRG  144 (484)
Q Consensus       120 e~AAI~IQsafRGylARralraLkg  144 (484)
                      ..+|+.||++||||++|+.|+.++.
T Consensus       768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~  792 (795)
T 1w7j_A          768 RAACIRIQKTIRGWLMRKKYMRMRR  792 (795)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999999999998664

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=85.93  E-value=0.72  Score=53.56  Aligned_cols=44  Identities=7%  Similarity=0.157  Sum_probs=37.9

Q ss_pred             HHH-HHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhh
Q 011478          142 LRG-LVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRM  185 (484)
Q Consensus       142 Lkg-lVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~  185 (484)
                      |.. ++.||+.+||+++|+.+...+....|++.||+.+|++..++
T Consensus       791 l~~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k  835 (1184)
T 1i84_S          791 ITDVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVX  835 (1184)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444 68999999999999999876667789999999999998775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	484
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	7e-04
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	0.002

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score = 39.7 bits (92), Expect = 7e-04
 Identities = 5/42 (11%), Positives = 18/42 (42%)

Query: 112 RFPGKSQEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLIQ 153
            +    +   ++  IQ   R ++  +    ++   ++K L++
Sbjct: 753 EYRAMVERRESIFCIQYNVRSFMNVKHWPWMKLFFKIKPLLK 794

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score = 38.2 bits (88), Expect = 0.002
 Identities = 8/35 (22%), Positives = 16/35 (45%)

Query: 118 QEEIAVIKIQTAFRGYLARRALRALRGLVRLKSLI 152
            + I +  IQ   R +L  R  +  +   ++K L+
Sbjct: 755 DQRIGLSVIQRNIRKWLVLRNWQWWKLYSKVKPLL 789

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	96.75
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	96.63
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	92.76
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.95
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.69

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=96.75  E-value=0.00035  Score=75.46  Aligned_cols=43  Identities=30%  Similarity=0.405  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHH----HHHHHHhhhcccchhhhh
Q 011478          119 EEIAVIKIQTAFRGYLARRALRALR----GLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       119 ee~AAI~IQsafRGylARralraLk----glVrLQAlvRG~~vRrqa  161 (484)
                      ...+|+.||+.||||++|+.|+.+|    .++.+|..+||+++||.+
T Consensus       730 l~~~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~~  776 (789)
T d1kk8a2         730 LSKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW  776 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3558999999999999999999865    467788888888888776

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=96.63  E-value=0.00061  Score=73.54  Aligned_cols=42  Identities=17%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHhhhcccchhhhh
Q 011478          120 EIAVIKIQTAFRGYLARRALRAL----RGLVRLKSLIQGHSVKRQA  161 (484)
Q Consensus       120 e~AAI~IQsafRGylARralraL----kglVrLQAlvRG~~vRrqa  161 (484)
                      ..+|+.||+.||||++|+.|+.+    ..++.||+.+||+++||.+
T Consensus       735 ~~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~~  780 (794)
T d2mysa2         735 AEIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKHW  780 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45899999999999999999763    3578889999999888876

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=92.76  E-value=0.052  Score=58.15  Aligned_cols=44  Identities=7%  Similarity=0.045  Sum_probs=38.1

Q ss_pred             HHHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478          143 RGLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       143 kglVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~  186 (484)
                      +.++.||+.+||+++|+++...+....|++.||+.+|++..|+-
T Consensus       736 ~~~~~IQ~~~Rg~l~Rk~~~~~~~~r~a~~~IQ~~~R~~~~~r~  779 (794)
T d2mysa2         736 EIITATQARCRGFLMRVEYRAMVERRESIFCIQYNVRSFMNVKH  779 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34789999999999999998767777899999999999987753

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.95  E-value=0.15  Score=54.30  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=35.6

Q ss_pred             HHHHHHhhhcccchhhhhhhhHHhhhhHHHHHHHHHHHHHhhh
Q 011478          144 GLVRLKSLIQGHSVKRQATTTLRCMQTLARVQSQIRARRIRMS  186 (484)
Q Consensus       144 glVrLQAlvRG~~vRrqa~~tlr~mqAavrIQs~vR~rr~R~~  186 (484)
                      .++.||+.+||+++|+++........+++.||+.+|++..|+.
T Consensus       733 ~~~~IQ~~~R~~~~Rk~y~k~r~~~~ai~~iQ~~~R~~~~rr~  775 (789)
T d1kk8a2         733 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN  775 (789)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            3678899999999999996544455688999999999988764

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.69  E-value=0.086  Score=55.68  Aligned_cols=25  Identities=36%  Similarity=0.603  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHH
Q 011478          119 EEIAVIKIQTAFRGYLARRALRALR  143 (484)
Q Consensus       119 ee~AAI~IQsafRGylARralraLk  143 (484)
                      ...+||+||+.||||++||.|..+|
T Consensus       705 l~~~~~~iQ~~~R~~l~Rk~~~r~r  729 (730)
T d1w7ja2         705 LRAACIRIQKTIRGWLMRKKYMRMR  729 (730)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999998765