Citrus Sinensis ID: 011497

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----

MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG

cccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccEEEccccccccccccccHHHHHccccHHHHHHcccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHcccccccccccccccccEEEEEEcccHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccEEEEccccEEEEEEEccccccccccccEEEccccccccEEEEEEEccccccccccccEEEEEEEEccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHHcccHHHHHccccccccEEEEccccHHHHHHHHHHHcccccccccccEEcccHHHHHHHHccccEEEEcccccc

ccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccHEEEcccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEcccHcccccEEEEEcccccccccEEEEEcccccEEEEEEcccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEcccEEEEEcccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHccHHHHHcccccccccEEEEEEcccHHHHHHHHHHHccccccccccccEcccHHHHHHHHHcHHHHcccccccc

mlsssgtssmkpklipyfDSALSKAASQIAIQGSVAILrrlfppkhdvnKILFFIYsdnktttkAGFKVMAasafplqgssnenLSQLirhssprevivgsnFQHQMYCHLLcglrnyefidgifspyaiGLIGAFSFFESKWEQLCDdlengypclditevAMRDSVIevlggpqpdlsKRIRsicgesnwsgifsklwpnvryikCVTTGSMSQYCSKIKyyagevpvlggdyfasecyvginldiaqppqttrfvmlptaayfeflpfdmekneavgeetvdfsgvEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFynsspqvefvmrapkssfeiiSERDLMSAMESFQMMLRNVMAVEIVEFAgytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKvqrdrgeisplsvsivkpgtFDRLLQVAIEkgapasqykppkivrnREIVEFMEGCSLVTVRLDSLDG

mlsssgtssmkpklIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVlggpqpdlskrIRSICGEsnwsgifsklwpNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGeetvdfsgveigKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSpqvefvmrapkSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGytnlesspkKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIykvqrdrgeisplsvsivkpgTFDRLLQVAIEkgapasqykppkiVRNREIVEfmegcslvtvrldsldg

*************LIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAF********************EVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRL*****

**********KPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTVRLDSLDG

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		484	2.2.26 [Sep-21-2011]
Q60EY1		488	Probable indole-3-acetic	no	no	0.797	0.790	0.490	1e-107
Q6I581		581	Probable indole-3-acetic	no	no	0.931	0.776	0.346	6e-75
Q9FZ87		609	Indole-3-acetic acid-amid	yes	no	0.960	0.763	0.313	4e-73
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.956	0.765	0.328	2e-72
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.956	0.765	0.328	2e-72
Q9LYU4		575	4-substituted benzoates-g	no	no	0.946	0.796	0.321	1e-71
O22190		595	Indole-3-acetic acid-amid	no	no	0.950	0.773	0.325	3e-71
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.956	0.775	0.297	1e-68
P0C0M2		614	Probable indole-3-acetic	no	no	0.958	0.755	0.300	1e-68
Q8LQM5		610	Probable indole-3-acetic	no	no	0.933	0.740	0.329	9e-68

>sp\|Q60EY1\|GH36_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.6 OS=Oryza sativa subsp. japonica GN=GH3.6 PE=2 SV=2	Back alignment and function desciption

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/404 (49%), Positives = 276/404 (68%), Gaps = 18/404 (4%)

Query: 70  MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 128
           MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct: 1   MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query: 129 AIGLIGAFSFFESKWEQLCDDLENGYPCLD-ITEVAMRDSVIE-VLGGPQPDLSKRIRSI 186
           A  L  A    +SKW QLCDDLE G  C D +T+ AMR +V + VL GP P+L+ R+R I
Sbjct: 61  AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query: 187 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 245
           C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct: 121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query: 246 LDIAQPPQTTRFVMLPTAAYFEFLPFDME--KNEAVGEETVDFSGVEIGKMYEVVVTTYR 303
           L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct: 181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query: 304 GFYRYRLGDIVKVVDFYNSSPQVEFVMRA--PKSSFEIISERDLMSAMESFQMMLRNVMA 361
           G YRY++GD+VK+  F++SSP+++FV RA  P+   E+++ERD+M+AM++FQ+ML++   
Sbjct: 241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query: 362 VEIVEFAGY----TNLESSPKKLMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 414
            E++EFA +       +   +   I VE+  G +KL D   S A LRRC + LE   G  
Sbjct: 299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query: 415 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 458
           Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct: 358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401

May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|Q6I581\|GH35_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1	Back alignment and function description

>sp\|Q9FZ87\|GH317_ARATH Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

>sp\|Q9LYU4\|GH312_ARATH 4-substituted benzoates-glutamate ligase GH3.12 OS=Arabidopsis thaliana GN=GH3.12 PE=1 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		484
224131296		578	GH3 family protein [Populus trichocarpa]	0.985	0.825	0.677	0.0
225436867		578	PREDICTED: probable indole-3-acetic acid	0.993	0.832	0.667	0.0
356504890		576	PREDICTED: probable indole-3-acetic acid	0.983	0.826	0.637	0.0
255638272		576	unknown [Glycine max]	0.983	0.826	0.637	0.0
218196075		638	hypothetical protein OsI_18426 [Oryza sa	0.958	0.727	0.487	1e-131
115462041		429	Os05g0143800 [Oryza sativa Japonica Grou	0.822	0.927	0.487	1e-110
82592860		488	RecName: Full=Probable indole-3-acetic a	0.797	0.790	0.490	1e-106
53749339		486	unknown protein [Oryza sativa Japonica G	0.793	0.790	0.490	1e-104
413948630		623	hypothetical protein ZEAMMB73_485956 [Ze	0.921	0.715	0.361	1e-75
413948631		592	hypothetical protein ZEAMMB73_485956 [Ze	0.921	0.753	0.361	1e-75

>gi\|224131296\|ref\|XP_002321049.1\| GH3 family protein [Populus trichocarpa] gi\|222861822\|gb\|EEE99364.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/487 (67%), Positives = 398/487 (81%), Gaps = 10/487 (2%)

Query: 4   SSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTT 63
           SSGTS+MKPKLIPYFDSALSKAAS  A QGS AI R L PP+ +VNKIL+F+Y+D+  TT
Sbjct: 96  SSGTSTMKPKLIPYFDSALSKAASYNAHQGSAAIFRNLVPPRPEVNKILWFLYADDAPTT 155

Query: 64  KAGFKVMAASAFPLQGS-SNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFID 122
           + GFKVMAAS +PLQG+ S  N SQ +   SPREV+ GSN + QMYCHLLC LR+++ ID
Sbjct: 156 RGGFKVMAASTYPLQGNKSRSNWSQTLSCISPREVVFGSNIKQQMYCHLLCALRSFDIID 215

Query: 123 GIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLSKR 182
           GI + YA GLI AFS  ESKWE+LCDDLE+G+P L+I + AM++SV+E LGGPQ DLS+R
Sbjct: 216 GIRAAYAAGLIRAFSLLESKWEKLCDDLESGFPSLEIGDAAMKESVVEFLGGPQVDLSRR 275

Query: 183 IRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASECYV 242
           IR IC ESNW GI SKLWPNVRY+K VTTGSM QY SK+KYYAG+V +LGGDYFASEC +
Sbjct: 276 IREICAESNWGGILSKLWPNVRYVKSVTTGSMKQYYSKLKYYAGDVMILGGDYFASECCL 335

Query: 243 GINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTY 302
           GINLDI QPP++TRFVMLPT AYFEFLPFD+ ++  VGEETVDFSGV++GKMYEV VTTY
Sbjct: 336 GINLDIQQPPESTRFVMLPTTAYFEFLPFDLNESSVVGEETVDFSGVKVGKMYEVAVTTY 395

Query: 303 RGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSFEIISERDLMSAMESFQMMLRNVMAV 362
           RG YRYRLGDIV+VV F+NSSP VEFVMRAPK+ +EII+E+DLMSAMESFQ    + MA 
Sbjct: 396 RGLYRYRLGDIVRVVGFHNSSPLVEFVMRAPKTGYEIITEKDLMSAMESFQ----HSMAA 451

Query: 363 EIVEFAGYTNLESSPKKLMIFVEIREGCT-----KLRDSVAILRRCCSSLEDAFGSIYKV 417
           E+VEFA +++ E SPK+L +F+E REGC      KL+ SV  L+RCCSSLE+  G IYKV
Sbjct: 452 EVVEFASFSDFELSPKRLKVFIEFREGCDFLQEEKLQGSVEALQRCCSSLENGLGEIYKV 511

Query: 418 QRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEFMEGCSLVTV 477
           Q+DRGEI PL VS+V+ G+FD +LQ+AI+ GAPA QYKPPKI+RNREIV+FME  +++T+
Sbjct: 512 QKDRGEIGPLLVSVVRSGSFDGILQMAIKNGAPAGQYKPPKIIRNREIVDFMEESAVLTI 571

Query: 478 RLDSLDG 484
            LDS  G
Sbjct: 572 SLDSFHG 578

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225436867\|ref\|XP_002271002.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Vitis vinifera] gi\|296086675\|emb\|CBI32310.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356504890\|ref\|XP_003521227.1\| PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|255638272\|gb\|ACU19449.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|218196075\|gb\|EEC78502.1\| hypothetical protein OsI_18426 [Oryza sativa Indica Group]	Back alignment and taxonomy information

>gi\|115462041\|ref\|NP_001054620.1\| Os05g0143800 [Oryza sativa Japonica Group] gi\|113578171\|dbj\|BAF16534.1\| Os05g0143800 [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|82592860\|sp\|Q60EY1.2\|GH36_ORYSJ RecName: Full=Probable indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=OsGH3-6	Back alignment and taxonomy information

>gi\|53749339\|gb\|AAU90198.1\| unknown protein [Oryza sativa Japonica Group]	Back alignment and taxonomy information

>gi\|413948630\|gb\|AFW81279.1\| hypothetical protein ZEAMMB73_485956 [Zea mays]	Back alignment and taxonomy information

>gi\|413948631\|gb\|AFW81280.1\| hypothetical protein ZEAMMB73_485956 [Zea mays]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		484
UNIPROTKB\|Q60EY1		488	GH3.6 "Probable indole-3-aceti	0.797	0.790	0.490	1e-100
UNIPROTKB\|Q6I581		581	GH3.5 "Probable indole-3-aceti	0.940	0.783	0.347	8.6e-72
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.950	0.773	0.329	4.3e-70
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.950	0.770	0.308	1.9e-67
TAIR\|locus:2008134		573	AT1G48660 "AT1G48660" [Arabido	0.948	0.801	0.304	4e-67
TAIR\|locus:2125571		591	DFL2 "DWARF IN LIGHT 2" [Arabi	0.973	0.796	0.311	6.5e-67
TAIR\|locus:2153092		581	AT5G51470 "AT5G51470" [Arabido	0.944	0.786	0.311	5.8e-66
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.958	0.755	0.302	1.2e-65
TAIR\|locus:2201170		578	AT1G23160 [Arabidopsis thalian	0.946	0.792	0.302	2e-65
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.938	0.769	0.325	3.2e-65

UNIPROTKB\|Q60EY1 GH3.6 "Probable indole-3-acetic acid-amido synthetase GH3.6" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

 Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
 Identities = 198/404 (49%), Positives = 278/404 (68%)

Query:    70 MAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPY 128
             MAA+A+ ++ S     S ++    SP EVI+G++ Q QMYCHLLCGLR ++ +D I +PY
Sbjct:     1 MAATAWGIRSSGIRGASPVMSACVSPAEVILGADHQQQMYCHLLCGLRRWDAVDCIRAPY 60

Query:   129 AIGLIGAFSFFESKWEQLCDDLENGYPCLDI-TEVAMRDSVIE-VLGGPQPDLSKRIRSI 186
             A  L  A    +SKW QLCDDLE G  C D+ T+ AMR +V + VL GP P+L+ R+R I
Sbjct:    61 AAALARALRLLQSKWRQLCDDLECGTVCADVVTDAAMRGAVQDGVLAGPCPELAGRVRRI 120

Query:   187 CGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGE-VPVLGGDYFASECYVGIN 245
             C   +W G+  +LWP+ RYI CVTTG+M QY   IK++AGE +PVLG DY ASEC +GIN
Sbjct:   121 CERDDWRGVLRQLWPDARYISCVTTGTMEQYFPAIKHFAGEALPVLGTDYLASECAIGIN 180

Query:   246 LDIAQPPQTTRFVMLPTAAYFEFLPFDMEK--NEAVGEETVDFSGVEIGKMYEVVVTTYR 303
             L+   PP+ T +V+LP AAYFEF+PFDM+     A   E VD +GVE GK YE+V TT+R
Sbjct:   181 LERTSPPEETTYVLLPRAAYFEFIPFDMDAAGRGAAAAEPVDIAGVEAGKTYELVATTFR 240

Query:   304 GFYRYRLGDIVKVVDFYNSSPQVEFVMRAP--KSSFEIISERDLMSAMESFQMMLRNVMA 361
             G YRY++GD+VK+  F++SSP+++FV RAP  +   E+++ERD+M+AM++FQ+ML++   
Sbjct:   241 GLYRYKVGDVVKIAGFHHSSPRLQFVTRAPPPQEHGEVLTERDVMAAMDTFQLMLKD--G 298

Query:   362 VEIVEFAGYT-NLESSPKK---LMIFVEIREGCTKLRD---SVAILRRCCSSLEDAFGSI 414
              E++EFA +  + +   ++     I VE+  G +KL D   S A LRRC + LE   G  
Sbjct:   299 GEVIEFAAFIIDGDGGQRRRRCATIAVEVSNG-SKLLDHERSAAFLRRCTAPLEGCLGGA 357

Query:   415 YKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPK 458
             Y++ R  G+++PL V++V+PGTFDRL + AI  GAPA+QYKPP+
Sbjct:   358 YRLSRATGDVAPLEVAVVRPGTFDRLAEAAIRGGAPANQYKPPR 401

GO:0009416 "response to light stimulus" evidence=IC

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB\|Q6I581 GH3.5 "Probable indole-3-acetic acid-amido synthetase GH3.5" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2008134 AT1G48660 "AT1G48660" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2125571 DFL2 "DWARF IN LIGHT 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2153092 AT5G51470 "AT5G51470" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2201170 AT1G23160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GH3-14	GH3 family protein (578 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		484
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	1e-94
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	7e-86
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	6e-83
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	9e-81

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

 Score =  295 bits (757), Expect = 1e-94
 Identities = 144/478 (30%), Positives = 215/478 (44%), Gaps = 65/478 (13%)

Query: 4   SSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTT- 62
           SSGT+  K K IP  D  L +     A+   +  L    P      K L    S  K   
Sbjct: 86  SSGTTGGKSKFIPVTDELLERFHFLGALAVLLLYLNNNPPGLFFEGKSLGLGGSFVKPEL 145

Query: 63  -TKAGFKVMAASAFPLQGSSNENLSQLIRHS-SPREVIVGSNFQHQMYCHLLCGLRNYEF 120
            T  G      S          NL    +   SP EVI+  +     YC LLCGL   + 
Sbjct: 146 KTPGGIPAGDLSTILY-----RNLPFWFKLYTSPDEVILCIDDWQSKYCALLCGLIRED- 199

Query: 121 IDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPDLS 180
           +  I    A  L+    F E  W++LC D+  G                     P P+L+
Sbjct: 200 VGRISGVPAWMLVLLIRFLEKHWKELCTDIRTGTL------------------RPNPELA 241

Query: 181 KRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFASEC 240
             I   C     S I  +LWPN++Y+     GSM  Y  K++   G +P+    Y ASE 
Sbjct: 242 DLIEQEC-----SKIIKELWPNLKYVFVWGGGSMEPYRPKLEKLLGGLPLYSETYAASEG 296

Query: 241 YVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVT 300
           + GINLD    P+   + ++P + +FEF+P D + +E    + VD   VE+GK YE+V+T
Sbjct: 297 FFGINLD----PEDVSYTLMPNSGFFEFIPVDEDGDED--PKIVDLVEVELGKNYELVIT 350

Query: 301 TYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSSF-----EIISERDLMSAMESFQMM 355
           T+ G YRYR+GD+V+V  FYN +PQ EFV R           E ++E +L  A++     
Sbjct: 351 TFAGLYRYRIGDVVRVTGFYNYTPQFEFVGR--TKHVLSLFGEKLTEEELEKAVK----- 403

Query: 356 LRNVMA---VEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAILRRCCSSLEDAF- 411
             N +    +EIVE+    +  + P   + + E+            +L  C  +L++A  
Sbjct: 404 --NALESTGLEIVEYTSAPDTSTEPGHYVHYWEL-------EFKPEVLEECARALDEALQ 454

Query: 412 -GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEK-GAPASQYKPPKIVRNREIVE 467
             S Y+  R++G + PL + +V PGTF   ++    K G    QYK P++ + RE +E
Sbjct: 455 ENSDYRRAREKGSLGPLEIRVVPPGTFYEWMKAFKGKLGGSIGQYKVPRLSKEREYLE 512

Length = 513

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		484
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.72
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.68
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.49
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.35
PRK00174		637	acetyl-CoA synthetase; Provisional	98.96
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	98.92
PLN02654		666	acetate-CoA ligase	98.72
PRK07529		632	AMP-binding domain protein; Validated	98.71
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	98.71
PRK09274		552	peptide synthase; Provisional	98.69
PRK04319		570	acetyl-CoA synthetase; Provisional	98.69
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	98.67
PRK07788		549	acyl-CoA synthetase; Validated	98.64
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	98.62
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	98.56
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	98.41
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	98.33
PRK06060		705	acyl-CoA synthetase; Validated	98.33
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	98.33
PTZ00237		647	acetyl-CoA synthetase; Provisional	98.33
PRK10946		536	entE enterobactin synthase subunit E; Provisional	98.3
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.29
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	98.28
PLN02860		563	o-succinylbenzoate-CoA ligase	98.22
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	98.19
PRK12467		3956	peptide synthase; Provisional	98.19
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	98.19
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.19
PLN02736		651	long-chain acyl-CoA synthetase	98.18
PRK12316		5163	peptide synthase; Provisional	98.15
PRK07514		504	malonyl-CoA synthase; Validated	98.14
PRK09088		488	acyl-CoA synthetase; Validated	98.1
PRK06164		540	acyl-CoA synthetase; Validated	98.1
PLN02574		560	4-coumarate--CoA ligase-like	98.1
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	98.09
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	98.09
PRK07867		529	acyl-CoA synthetase; Validated	98.04
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.03
PRK08180		614	feruloyl-CoA synthase; Reviewed	98.01
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	98.0
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	98.0
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	97.99
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	97.98
PRK06145		497	acyl-CoA synthetase; Validated	97.98
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	97.96
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	97.95
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	97.95
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	97.94
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	97.91
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	97.91
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	97.9
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	97.9
PLN02330		546	4-coumarate--CoA ligase-like 1	97.88
PRK08316		523	acyl-CoA synthetase; Validated	97.87
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	97.87
PRK13382		537	acyl-CoA synthetase; Provisional	97.87
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	97.86
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	97.86
PRK12583		558	acyl-CoA synthetase; Provisional	97.85
PRK05850		578	acyl-CoA synthetase; Validated	97.85
PRK05852		534	acyl-CoA synthetase; Validated	97.84
PRK08315		559	AMP-binding domain protein; Validated	97.83
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	97.81
PRK13390		501	acyl-CoA synthetase; Provisional	97.79
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	97.78
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	97.74
PLN02246		537	4-coumarate--CoA ligase	97.74
PLN03051		499	acyl-activating enzyme; Provisional	97.73
PRK06839		496	acyl-CoA synthetase; Validated	97.73
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	97.72
PRK13383		516	acyl-CoA synthetase; Provisional	97.72
PRK07798		533	acyl-CoA synthetase; Validated	97.7
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.7
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	97.68
PRK12467		3956	peptide synthase; Provisional	97.67
PRK07638		487	acyl-CoA synthetase; Validated	97.67
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	97.66
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	97.66
PRK07868		994	acyl-CoA synthetase; Validated	97.64
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	97.63
PRK09192		579	acyl-CoA synthetase; Validated	97.62
PRK13388		540	acyl-CoA synthetase; Provisional	97.6
PRK07787		471	acyl-CoA synthetase; Validated	97.6
PRK06188		524	acyl-CoA synthetase; Validated	97.6
PLN02614		666	long-chain acyl-CoA synthetase	97.59
PRK05691		4334	peptide synthase; Validated	97.58
PRK13391		511	acyl-CoA synthetase; Provisional	97.57
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	97.55
PRK07470		528	acyl-CoA synthetase; Validated	97.54
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	97.51
PRK08308		414	acyl-CoA synthetase; Validated	97.51
PRK06178		567	acyl-CoA synthetase; Validated	97.47
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	97.47
PLN03102		579	acyl-activating enzyme; Provisional	97.46
PRK12316		5163	peptide synthase; Provisional	97.45
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	97.44
PRK05857		540	acyl-CoA synthetase; Validated	97.42
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	97.42
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	97.42
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	97.41
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	97.41
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	97.39
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	97.39
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	97.33
PLN03052		728	acetate--CoA ligase; Provisional	97.32
PRK05691		4334	peptide synthase; Validated	97.31
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.31
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	97.29
PRK06018		542	putative acyl-CoA synthetase; Provisional	97.26
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	97.18
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	97.13
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	97.11
PLN02861		660	long-chain-fatty-acid-CoA ligase	97.09
PTZ00342		746	acyl-CoA synthetase; Provisional	96.96
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.94
PRK08162		545	acyl-CoA synthetase; Validated	96.82
PLN02430		660	long-chain-fatty-acid-CoA ligase	96.7
PTZ00216		700	acyl-CoA synthetase; Provisional	96.57
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	96.46
PRK12582		624	acyl-CoA synthetase; Provisional	96.31
PLN02479		567	acetate-CoA ligase	95.96
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	95.91
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	95.19
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	94.34
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	93.17
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	90.1
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	85.61
PRK09188		365	serine/threonine protein kinase; Provisional	81.47

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=3.4e-113  Score=916.07  Aligned_cols=474  Identities=31%  Similarity=0.607  Sum_probs=436.2

Q ss_pred             CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeEEEEecccccccCCCcEEeeCccccccCC
Q 011497            1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNKTTTKAGFKVMAASAFPLQGS   80 (484)
Q Consensus         1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~~   80 (484)
                      |++|||||+|++|+||+|++++++++.  ++.+++.++.++ .|++..||.||+++.+.+.+|++|||+|++|+.+|+ |
T Consensus       106 F~~SSGTT~g~~K~IP~t~e~l~~~~~--~~~~~~~~~~~~-~p~l~~Gk~~~~~~~~~~~~T~~Gip~g~~st~~y~-s  181 (612)
T PLN02620        106 FLTSSGTSGGERKLMPTIEEELGRRSL--LYSLLMPVMSQF-VPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK-S  181 (612)
T ss_pred             hhhcCCCCCCceeeeecCHHHHHHHHH--HHHHHHHHHHhh-CCCcccCcEEEEEecccCccCCCCcccccccchhhh-h
Confidence            789999998899999999999998776  677777777775 699999999999999999999999999999999999 5


Q ss_pred             Cc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 011497           81 SN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCL  157 (484)
Q Consensus        81 ~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~~  157 (484)
                      .+ +. + .+...|++|.+++.++|..+++||||||+|.++++|..++++|+++|+.+++.||++|++||+||++|++++
T Consensus       182 ~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~~~Le~~w~~L~~DI~~G~ls~  261 (612)
T PLN02620        182 SHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKHWTLLCRDIRTGTIDS  261 (612)
T ss_pred             hhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            44 32 2 445689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCCCccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccccc
Q 011497          158 DITEVAMRDSVIEVLGGPQPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFA  237 (484)
Q Consensus       158 ~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y~a  237 (484)
                      +++|+++|++|++.| +|||++|++|+++|++.+|+||+++|||||++|+||++|+|++|+++|++|+|++|+++.+|+|
T Consensus       262 ~itd~~~R~av~~~L-~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y~p~L~~y~gglpl~~~~Y~A  340 (612)
T PLN02620        262 QITDPSVREAVMKIL-KPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYAS  340 (612)
T ss_pred             cCCCHHHHHHHHhhc-CCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHHHHHHHHHcCCCccccccccc
Confidence            999999999999999 7999999999999999899999999999999999999999999999999999999999999999


Q ss_pred             CceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCc------------ccCCCceeecccccCCceEEEEeccCCce
Q 011497          238 SECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKN------------EAVGEETVDFSGVEIGKMYEVVVTTYRGF  305 (484)
Q Consensus       238 SEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~------------~~~~~~~l~l~ele~G~~YeLVvTt~~GL  305 (484)
                      |||+||||++|.+++++..|+++|+++||||||+++.+.            +.+++++|+++|||+|++|||||||.+||
T Consensus       341 SE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~ev~~G~~YelvvTt~~GL  420 (612)
T PLN02620        341 SECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGL  420 (612)
T ss_pred             cceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCccccHHHccCCCeEEEEEEecCce
Confidence            999999999999999889999999999999999875210            13346789999999999999999999999


Q ss_pred             eeeeeCCEEEEeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEE
Q 011497          306 YRYRLGDIVKVVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMI  382 (484)
Q Consensus       306 yRYr~GDvV~v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l  382 (484)
                      ||||+||||+|+||||++|+|+|++|.+.   |+|||++|++++.||.+|...|.. .+++|+||++++|.+..||||++
T Consensus       421 yRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~-~~~~l~dyts~~d~~~~PghYvl  499 (612)
T PLN02620        421 YRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVP-FDASLTEYTSYADTSTIPGHYVL  499 (612)
T ss_pred             EEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcc-cCceeeeEEeccccCCCCCceEE
Confidence            99999999999999999999999999998   999999999999999999986644 58999999999998778999999


Q ss_pred             EEEeecCccccCCCHHHHHHHHHHHHHHhChhHHHhhhcC-CCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCcccC
Q 011497          383 FVEIREGCTKLRDSVAILRRCCSSLEDAFGSIYKVQRDRG-EISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVR  461 (484)
Q Consensus       383 ~vE~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~g-~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~~  461 (484)
                      |||+...+. .+.+.+.+++||..||++||.+|+.+|..+ .|+|++|++|++|||++++++++++|++.+|||+|||++
T Consensus       500 ~~El~~~~~-~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~~~~~G~s~~QyK~Pr~v~  578 (612)
T PLN02620        500 FWELCLNGS-TPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVK  578 (612)
T ss_pred             EEEEecCCC-CCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHHHHHcCCccccccCceEec
Confidence            999842111 124567899999999999999999999987 599999999999999999999999999999999999999


Q ss_pred             CHHHHHHHhccceEEEeccC
Q 011497          462 NREIVEFMEGCSLVTVRLDS  481 (484)
Q Consensus       462 ~~~~~~~l~~~~~~~~~~~~  481 (484)
                      +++++++|+++|++.+--..
T Consensus       579 ~~~~~~~l~~~v~~~~~s~~  598 (612)
T PLN02620        579 FAPIIELLNSRVVSNYFSPK  598 (612)
T ss_pred             CHHHHHHHHhhhheeecccc
Confidence            99999999999999876543

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		484
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		7e-73
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		5e-72
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-69
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		7e-67

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

Iteration: 1

Score = 271 bits (692), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 157/488 (32%), Positives = 262/488 (53%), Gaps = 30/488 (6%) Query: 2 LSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKH----DVNKILFFIYS 57 L SSGTS K++P+ + L + LR KH + K + F+++ Sbjct: 99 LLSSGTSGGAQKMMPWNNKYLDNLTF-------IYDLRMQVITKHVKGVEEGKGMMFLFT 151 Query: 58 DNKTTTKAGF--KVMAASAFPLQGSSNENLSQLIRHSSPREVIVGSNFQHQMYCHLLCGL 115 ++ T +G +V +S F N + ++SP EVI+ N +YCHLLCGL Sbjct: 152 KQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGL 211 Query: 116 RNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGP 175 + + S +A ++ A ++ WE+LC ++ +G+ +T++ ++SV VLGGP Sbjct: 212 VQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGGP 271 Query: 176 QPDLSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDY 235 +P+L+ I IC +++W GI +LWPN +YI+ V TGSM QY + YY ++P++ Y Sbjct: 272 RPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTY 331 Query: 236 FASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFD-MEKNEAVGEETVDFSGVEIGKM 294 +SE GINLD P+ + +P +YFEF+P D +KN+ VD V++G Sbjct: 332 GSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDKNDV-----VDLEDVKLGCT 386 Query: 295 YEVVVTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAP---KSSFEIISERDLMSAMES 351 YE VVT + G YR R+GDIV V FYN++PQ +FV R + +E DL A+ Sbjct: 387 YEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ 446 Query: 352 FQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEI--REGCTKLRDSVAI----LRRCCS 405 +++L + +++ +F Y + + P ++++E+ +EG K + L CC Sbjct: 447 AKLVLES-SGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCL 505 Query: 406 SLEDAFGSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNRE 464 +E++ ++YK R + G I PL + +V+ GTFD L+ I +GA QYK P+ +++ + Sbjct: 506 VMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGK 565 Query: 465 IVEFMEGC 472 ++ +E C Sbjct: 566 ALQVLETC 573

PyMOL of 4ewv

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		484
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	7e-83
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	5e-79
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

 Score =  266 bits (680), Expect = 7e-83
 Identities = 145/484 (29%), Positives = 258/484 (53%), Gaps = 20/484 (4%)

Query: 1   MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHDVNKILFFIYSDNK 60
            L SSGTS    K++P+ +  L        ++  + ++ +      +   ++F  ++  +
Sbjct: 98  FLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLR--MQVITKHVKGVEEGKGMMFL-FTKQE 154

Query: 61  TTTKAGFKVMAASAFPLQGSSNENL--SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNY 118
           + T +G     A++   +    +N   +    ++SP EVI+  N    +YCHLLCGL   
Sbjct: 155 SMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQR 214

Query: 119 EFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPCLDITEVAMRDSVIEVLGGPQPD 178
           + +    S +A  ++ A    ++ WE+LC ++ +G+    +T++  ++SV  VLGGP+P+
Sbjct: 215 DEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTDLGCQNSVSLVLGGPRPE 274

Query: 179 LSKRIRSICGESNWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDYFAS 238
           L+  I  IC +++W GI  +LWPN +YI+ V TGSM QY   + YY  ++P++   Y +S
Sbjct: 275 LADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCNDLPLVSTTYGSS 334

Query: 239 ECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVV 298
           E   GINLD    P+   +  +P  +YFEF+P D         + VD   V++G  YE V
Sbjct: 335 ETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGDK----NDVVDLEDVKLGCTYEPV 390

Query: 299 VTTYRGFYRYRLGDIVKVVDFYNSSPQVEFVMRAPKSS---FEIISERDLMSAMESFQMM 355
           VT + G YR R+GDIV V  FYN++PQ +FV R         +  +E DL  A+   +++
Sbjct: 391 VTNFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLV 450

Query: 356 LRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTKLRDSVAI------LRRCCSSLED 409
           L +   +++ +F  Y +  + P   ++++E+     + +++         L  CC  +E+
Sbjct: 451 LES-SGLDLKDFTSYADTSTFPGHYVVYLEVDTKEGEEKETAQFELDEEALSTCCLVMEE 509

Query: 410 AFGSIYKVQRDR-GEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIVRNREIVEF 468
           +  ++YK  R + G I PL + +V+ GTFD L+   I +GA   QYK P+ +++ + ++ 
Sbjct: 510 SLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGASTGQYKTPRCIKSGKALQV 569

Query: 469 MEGC 472
           +E C
Sbjct: 570 LETC 573

PyMOL of 4eql

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		484
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.5
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.48
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.48
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	98.89
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	98.85
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.79
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	98.74
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	98.71
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	98.64
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	98.56
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.52
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	98.5
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	98.48
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	98.47
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	98.43
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	98.42
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	98.36
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	98.34
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	98.34
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	98.33
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	98.33
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	98.25
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	98.24
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	98.23
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	98.22
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.21
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	98.07
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	97.96
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	97.95
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	97.9
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	97.87
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	97.85
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	97.8
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	97.73
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	97.43
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	95.89
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	95.5
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	94.82

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

Probab=100.00  E-value=6.6e-110  Score=896.86  Aligned_cols=464  Identities=33%  Similarity=0.608  Sum_probs=423.1

Q ss_pred             CccCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCeeEEEEecccccccCCCcEEeeCccccccC
Q 011497            1 MLSSSGTSSMKPKLIPYFDSALSKAASQIAIQGSVAILRRLFPPKHD-VNKILFFIYSDNKTTTKAGFKVMAASAFPLQG   79 (484)
Q Consensus         1 f~~TSGTT~g~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~~~~p~~~-~gk~l~~~~~~~~~~t~~Gip~g~~s~~~~~~   79 (484)
                      |++|||||+|++|+||+|+++++.+++  ++.++..+++++  |.++ .||.|+|++++.+.+|++|+|+|++|++.++ 
T Consensus       103 f~~SSGTT~gk~K~IP~T~~~l~~~~~--~~~~~~~~~~~~--p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~~S~~~~~-  177 (581)
T 4epl_A          103 ISLSSGTSQGRPKFIPFTDELMENTLQ--LFRTAFAFRNRD--FPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYR-  177 (581)
T ss_dssp             EEEEEEEETTEEEEEEECHHHHHHHHH--HHHHHHHHHHHH--SCCCTTCEEEEECCCCCCEECTTSCEEECHHHHHHT-
T ss_pred             EEecCCCCCCCccccccCHHHHHHHHH--HHHHHHHHHhhC--CccccCCcEEEEeecCCcccCCCCceeeechhhhhh-
Confidence            789999999999999999999998654  455666677776  8888 8999998899999999999999999999998 


Q ss_pred             CCc-cc-c-cccccccCccccccCCChhHHHHHHHHhccccCCccceecccChhHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 011497           80 SSN-EN-L-SQLIRHSSPREVIVGSNFQHQMYCHLLCGLRNYEFIDGIFSPYAIGLIGAFSFFESKWEQLCDDLENGYPC  156 (484)
Q Consensus        80 ~~~-~~-~-~~~~~~~~P~~~~~~~d~~~~~Y~~ll~aL~~~~~v~~i~~~f~~~l~~~~~~le~~w~el~~dI~~Gt~~  156 (484)
                      |.+ ++ + ++...+++|.+++.++|+.+++||||||||.++++|.+|+++||++|+++++.|+++|++||+||++|+++
T Consensus       178 s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~dI~~gtl~  257 (581)
T 4epl_A          178 NPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVLS  257 (581)
T ss_dssp             STTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             cchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            654 33 2 34567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHhCCCCHHHHHHHHHHhcCC-CccccccccCCCCceEEEEecCchhhhHHHHHHHhCCCCcccccc
Q 011497          157 LDITEVAMRDSVIEVLGGPQPDLSKRIRSICGES-NWSGIFSKLWPNVRYIKCVTTGSMSQYCSKIKYYAGEVPVLGGDY  235 (484)
Q Consensus       157 ~~i~~~~iR~~l~~~lg~p~p~rA~~L~~~~~~~-~~~gi~~~lWP~L~~i~~~~~G~~~~y~~~l~~~~g~v~~~~~~y  235 (484)
                      ++++++++|++|++.+ +|+|++|++|+++|++. +|.|++++|||||++|+||++|+|++|++++++|+|++|+++.+|
T Consensus       258 ~~it~~~~R~~l~~v~-~p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~~p~~~~~Y  336 (581)
T 4epl_A          258 NRITVPSVRTAMSKLL-TPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGDLPLVSHDY  336 (581)
T ss_dssp             TTCCCHHHHHHHHTTC-CCCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTTSCEEECCE
T ss_pred             cCCCCHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCCCccccCce
Confidence            9999999999999999 79999999999999985 699999999999999999999999999999999999999999999


Q ss_pred             ccCceeEEeecCCCCCCCCcceeccCCceEEEeeecCCcCcccCCCceeecccccCCceEEEEeccCCceeeeeeCCEEE
Q 011497          236 FASECYVGINLDIAQPPQTTRFVMLPTAAYFEFLPFDMEKNEAVGEETVDFSGVEIGKMYEVVVTTYRGFYRYRLGDIVK  315 (484)
Q Consensus       236 ~aSEg~~~i~~~~~~~~~~~~~~l~~~~~ffEFip~~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~~GLyRYr~GDvV~  315 (484)
                      +||||++|+|+++.+++++..|+++|+.+||||||+++.  +.+++++|+++|||+|++|||||||.+||||||+||+|+
T Consensus       337 ~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~--~~~~~~~v~l~eve~G~~YelviTt~~GL~RYr~GD~v~  414 (581)
T 4epl_A          337 GSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSET--GEGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVK  414 (581)
T ss_dssp             EETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC---------CCCEEGGGCCTTCEEEEEEESTTSCSSEEEEEEEE
T ss_pred             eccceeeeeecCCCCCccccceeecCCcEEEEEEecccc--cCCCCceeeHHHcCCCCeEEEEEeeccceeeEEcCCEEE
Confidence            999999999999999888889999999999999999865  345678999999999999999999999999999999999


Q ss_pred             EeeeeCCCcEEEEeeeCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEeecCCCCCceEEEEEEeecCccc
Q 011497          316 VVDFYNSSPQVEFVMRAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYTNLESSPKKLMIFVEIREGCTK  392 (484)
Q Consensus       316 v~g~~~~~P~i~F~gR~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~~~~~~~~~Y~l~vE~~~~~~~  392 (484)
                      |+||+|++|+|+|+||.++   ++|||++|++|++||.+|+++|.+ +|++|.+||+++|.++.||||++|||+.+.   
T Consensus       415 v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~-~~~~l~eft~~~d~~~~p~hyv~~wE~~~~---  490 (581)
T 4epl_A          415 VIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSE-EKIEVIDFSSYIDVSTDPGHYAIFWEISGE---  490 (581)
T ss_dssp             EEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHT-TTCCEEEEEEEEECSSSSCEEEEEEEESSC---
T ss_pred             EecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcc-cCCeEEEEEEecCCCCCCCcEEEEEeecCC---
Confidence            9999999999999999998   999999999999999999987766 899999999999877779999999999642   


Q ss_pred             cCCCHHHHHHHHHHHHHHh-ChhHHHhhhcCCCCCcEEEEeCCChHHHHHHHHHHcCCCCCCCCCCccc--CCHHHHHHH
Q 011497          393 LRDSVAILRRCCSSLEDAF-GSIYKVQRDRGEISPLSVSIVKPGTFDRLLQVAIEKGAPASQYKPPKIV--RNREIVEFM  469 (484)
Q Consensus       393 ~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~K~Pr~~--~~~~~~~~l  469 (484)
                        ++.+.+++||..||++| |++|+.+|..++|+|++|++|++|+|.+|+++++++|++.+|+|+|||+  ++++++++|
T Consensus       491 --~~~~~l~~~~~~Ld~~L~n~~Y~~~R~~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~~~Q~K~PR~~~~~~~~~~~~L  568 (581)
T 4epl_A          491 --TNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQIL  568 (581)
T ss_dssp             --CCHHHHHHHHHHHHHHCCCHHHHHHHHHTSSCCCEEEEECTTHHHHHHHHHHTTC------CCCSSCCTTCHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHhCChhHHHHHhcCCCCCcEEEEeCcchHHHHHHHHHhCCCCCCCcCCCeeecCCCHHHHHHH
Confidence              45678999999999999 9999999998999999999999999999999999999999999999999  999999999


Q ss_pred             hccceEEEe
Q 011497          470 EGCSLVTVR  478 (484)
Q Consensus       470 ~~~~~~~~~  478 (484)
                      +++|++++.
T Consensus       569 ~~~v~~~~~  577 (581)
T 4epl_A          569 CENVVSSYF  577 (581)
T ss_dssp             HTTEEEEEE
T ss_pred             Hhccccccc
Confidence            999999875

PyMOL of 4epl

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		484
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	98.88
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.26
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	98.13
d1amua_		514	Phenylalanine activating domain of gramicidin synt	97.9
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	97.18
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	96.79
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	96.03

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=98.88  E-value=4.2e-08  Score=104.95  Aligned_cols=224  Identities=15%  Similarity=0.126  Sum_probs=118.2

Q ss_pred             CCCCceEEEEecCc--hhhhHHHHHHHhC--CCCccccccccCcee-EEeecCCCCC---CCCcceeccCCceEEEeeec
Q 011497          200 WPNVRYIKCVTTGS--MSQYCSKIKYYAG--EVPVLGGDYFASECY-VGINLDIAQP---PQTTRFVMLPTAAYFEFLPF  271 (484)
Q Consensus       200 WP~L~~i~~~~~G~--~~~y~~~l~~~~g--~v~~~~~~y~aSEg~-~~i~~~~~~~---~~~~~~~l~~~~~ffEFip~  271 (484)
                      .+.|++|.  .+|.  .....+.+.+.+|  +++++ .+||.||+. +.+...+...   ++ ......|+.. ...++.
T Consensus       373 l~sLr~i~--~~G~pl~~~~~~~~~~~~g~~~~~i~-~~yG~TE~g~~~~~~~~~~~~~~~g-s~G~p~~g~~-v~ivd~  447 (643)
T d1pg4a_         373 RSSLRILG--SVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAG-SATRPFFGVQ-PALVDN  447 (643)
T ss_dssp             CTTCCEEE--EESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTT-CCBSBCTTCC-EEEECT
T ss_pred             CCceEEEE--EEeCCCCHHHHHHHHHHhCCCCceEE-EeechhhccceEEecCCCccCCCCC-ccccccCCCE-EEEECC
Confidence            36677552  2332  2445566777765  48899 999999953 2221111110   11 1111233332 344442


Q ss_pred             CCcCcccCCCceeecccccCCceEEEEeccC-----Ccee----------------eeeeCCEEEEeeeeCCCcEEEEee
Q 011497          272 DMEKNEAVGEETVDFSGVEIGKMYEVVVTTY-----RGFY----------------RYRLGDIVKVVDFYNSSPQVEFVM  330 (484)
Q Consensus       272 ~~~~~~~~~~~~l~l~ele~G~~YeLVvTt~-----~GLy----------------RYr~GDvV~v~g~~~~~P~i~F~g  330 (484)
                      +        ++     +++.|+.+||+|+..     .|.|                -|+|||++++..    .=.+.|+|
T Consensus       448 ~--------g~-----~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~G  510 (643)
T d1pg4a_         448 E--------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITG  510 (643)
T ss_dssp             T--------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEE
T ss_pred             C--------CC-----CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEec
Confidence            2        22     356899999999863     2222                288999999843    23799999


Q ss_pred             eCCC---cceeecCHHHHHHHHHHHHHHhccccCceEEEEEEee--cCCCCCceEEEEEEeecCccccCCCHHHHHHHHH
Q 011497          331 RAPK---SSFEIISERDLMSAMESFQMMLRNVMAVEIVEFAGYT--NLESSPKKLMIFVEIREGCTKLRDSVAILRRCCS  405 (484)
Q Consensus       331 R~~~---i~gEkl~e~~v~~av~~~~~~~~~~~g~~l~~f~~~~--~~~~~~~~Y~l~vE~~~~~~~~~~~~~~l~~~~~  405 (484)
                      |.++   +.|++++..+|+++|.+.       .+  +.+-+|+.  +.. .....+.||.++.+   ...+.+...++.+
T Consensus       511 R~dd~ik~~G~ri~p~eIE~~l~~~-------p~--V~eaaVvg~~d~~-~ge~~~a~Vv~~~~---~~~~~~~~~~i~~  577 (643)
T d1pg4a_         511 RVDDVLNVSGHRLGTAEIESALVAH-------PK--IAEAAVVGIPHAI-KGQAIYAYVTLNHG---EEPSPELYAEVRN  577 (643)
T ss_dssp             ESSSEEEETTEEEEHHHHHHHHHHS-------TT--EEEEEEEEEEETT-TEEEEEEEEEECTT---CCCCHHHHHHHHH
T ss_pred             ccccEEEECCEEECHHHHHHHHHhC-------CC--cceEEEEEEECCC-CCeEEEEEEEECCC---CCCCHHHHHHHHH
Confidence            9998   889999999999988753       22  33444332  321 11244578887643   1234343344444


Q ss_pred             HHHHHhChhHHHhhhcCCCCCcEEEEeCC------ChHHH--HHHHHHHcCCCCCCCCCCcccCCHHHHHHHh
Q 011497          406 SLEDAFGSIYKVQRDRGEISPLSVSIVKP------GTFDR--LLQVAIEKGAPASQYKPPKIVRNREIVEFME  470 (484)
Q Consensus       406 ~ld~~Ln~~Y~~~R~~g~l~p~~v~~v~~------gtf~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~l~  470 (484)
                      .+.++|.+         .-.|-.|.+|+.      |-..+  +++  +..|. ..+.+-+--+.|++.++.+.
T Consensus       578 ~~~~~L~~---------~~vP~~i~~v~~lP~T~sGKi~R~~Lr~--~~~~~-~~~~~~~~t~~~p~~l~~~~  638 (643)
T d1pg4a_         578 WVRKEIGP---------LATPDVLHWTDSLPKTRSGKIMRRILRK--IAAGD-TSNLGDTSTLADPGVVEKLL  638 (643)
T ss_dssp             HHHHHTCG---------GGCCSEEEECSCCCBCTTSCBCHHHHHH--HHHTC-----------CCTTHHHHHH
T ss_pred             HHHhhCCc---------ccCccEEEEECCCCCCCCcCccHHHHHH--HhcCC-ccccCCccccCChHHHHHHH
Confidence            45444421         235666777642      32222  222  22342 22344455677777776654

PyMOL of d1pg4a_

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure