Citrus Sinensis ID: 011501
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 484 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWA3 | 486 | 6-phosphogluconate dehydr | yes | no | 0.993 | 0.989 | 0.898 | 0.0 | |
| Q94KU1 | 483 | 6-phosphogluconate dehydr | N/A | no | 0.989 | 0.991 | 0.887 | 0.0 | |
| Q9LI00 | 480 | 6-phosphogluconate dehydr | yes | no | 0.991 | 1.0 | 0.855 | 0.0 | |
| Q9FFR3 | 487 | 6-phosphogluconate dehydr | no | no | 0.989 | 0.983 | 0.757 | 0.0 | |
| Q9SH69 | 487 | 6-phosphogluconate dehydr | no | no | 0.987 | 0.981 | 0.756 | 0.0 | |
| Q94KU2 | 537 | 6-phosphogluconate dehydr | N/A | no | 0.993 | 0.895 | 0.752 | 0.0 | |
| Q2R480 | 508 | 6-phosphogluconate dehydr | no | no | 0.987 | 0.940 | 0.703 | 0.0 | |
| P21577 | 471 | 6-phosphogluconate dehydr | yes | no | 0.966 | 0.993 | 0.567 | 1e-153 | |
| P80859 | 469 | 6-phosphogluconate dehydr | yes | no | 0.969 | 1.0 | 0.542 | 1e-148 | |
| P52208 | 482 | 6-phosphogluconate dehydr | N/A | no | 0.966 | 0.970 | 0.549 | 1e-145 |
| >sp|Q9FWA3|6GPD3_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 3 OS=Arabidopsis thaliana GN=At3g02360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/481 (89%), Positives = 462/481 (96%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EGNLPLYGFHDPESF
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAGSPVDQTIKTLS Y+EKGDCI+DGGNEWYENTERR+KAVAE G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPS+MPGGS+EAYK+IEDI+LKVAAQV DSGPCVTY+GKGGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL VFS+WNKGEL SFL+EITADIFG
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTIESSLDARFLSGLK+ERV+A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF++ G GD+L +Q VDKK+L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LKLG
Sbjct: 306 AKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLKLG 365
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIK+AYDRN +LAN+LVDPEFAKEIIERQSAWRRVVCLAINS
Sbjct: 366 ELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAINS 425
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER D+ GSFHTEWFKIA+QSK
Sbjct: 426 GISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQSK 485
Query: 484 I 484
I
Sbjct: 486 I 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 4 |
| >sp|Q94KU1|6PGD1_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Spinacia oleracea GN=pgdC PE=1 SV=1 | Back alignment and function description |
|---|
Score = 892 bits (2306), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/481 (88%), Positives = 464/481 (96%), Gaps = 2/481 (0%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V+SIQKPRVIIMLVKAG+PVD TIKTLS Y+EKGDCIIDGGNEWYENTERR+KA+ E GL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDATIKTLSAYLEKGDCIIDGGNEWYENTERREKAMEEKGL 124
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPS+MPGGSF+AYK+IEDIL KVAAQV DSGPCVTY+GKGGSGN
Sbjct: 125 LYLGMGVSGGEEGARNGPSMMPGGSFDAYKNIEDILTKVAAQV-DSGPCVTYIGKGGSGN 183
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL++VF+EWN+GELLSFLIEITADIFG
Sbjct: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELKEVFAEWNRGELLSFLIEITADIFG 243
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI SSLD+RFLSGLK+ERVEA
Sbjct: 244 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDSRFLSGLKDERVEA 303
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF++ G+ D L++Q VDKKKLIDDVRQALYA+KICSYAQGMNLIRAKS+EK WDLKLG
Sbjct: 304 AKVFKAGGVEDTLSDQVVDKKKLIDDVRQALYAAKICSYAQGMNLIRAKSVEKEWDLKLG 363
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRA+FLDRIKKAYDRNP+L+N+L+DPEF+KE+IERQSAWRRVVCLAI +
Sbjct: 364 ELARIWKGGCIIRAMFLDRIKKAYDRNPNLSNLLIDPEFSKEMIERQSAWRRVVCLAIGA 423
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFD+YRRERLPANLVQAQRDYFGAHTYER+D+ G+FHTEWFK+AK SK
Sbjct: 424 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERIDIPGAFHTEWFKLAK-SK 482
Query: 484 I 484
I
Sbjct: 483 I 483
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9LI00|6PGD1_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Oryza sativa subsp. japonica GN=G6PGH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 874 bits (2259), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/484 (85%), Positives = 456/484 (94%), Gaps = 4/484 (0%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EGNLP+YGFHDP
Sbjct: 1 MAVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDP 60
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
SFV+SIQKPRV+IMLVKAG+PVDQTI TL+ ++E+GDCIIDGGNEWYENTERR+KA+ E
Sbjct: 61 ASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEE 120
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
GLLYLGMGVSGGEEGAR GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGG
Sbjct: 121 RGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGG 180
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
SGNFVKM+HNGIEYGDMQLI+EAYDVLKSVGKL+N ELQQVFSEWNKGELLSFLIEITAD
Sbjct: 181 SGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITAD 240
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
IF IKDD+G G+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIE+SLD+RFLSGLK+ER
Sbjct: 241 IFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDER 300
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
VEAAKVF+ GD + VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L
Sbjct: 301 VEAAKVFQ----GDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSL 356
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
LGEL RIWKGGCIIRAIFLDRIKKAYDRN DLAN+LVDPEFA+EI++RQ+AWRRVVCLA
Sbjct: 357 NLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLA 416
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480
IN+G+STPGMS+SLAYFD+YRR+RLPANLVQAQRDYFGAHTYERVDM GSFHTEWFKIA+
Sbjct: 417 INNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIAR 476
Query: 481 QSKI 484
+K+
Sbjct: 477 AAKM 480
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9FFR3|6PGD2_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Arabidopsis thaliana GN=At5g41670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/482 (75%), Positives = 426/482 (88%), Gaps = 3/482 (0%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G + P F
Sbjct: 7 SRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQYSPRDF 66
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQ+PR +I+LVKAG+PVDQTI LS YME GDCIIDGGNEWY+NTERR + GL
Sbjct: 67 VLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKKGL 126
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSF AY +++DIL KVAAQV D GPCVTY+G+GGSGN
Sbjct: 127 LYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIGEGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLI+EAYDVLK+VG LSN+EL ++F+EWN+GEL SFL+EIT+DIF
Sbjct: 186 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEITSDIFR 245
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
+KDD GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLK+ER A
Sbjct: 246 VKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENA 305
Query: 304 AKVFRSSGIGDVL--AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
AKV +G+ + + A + VDKK+LIDDVRQALYASKICSYAQGMNL+RAKS+EKGWDL
Sbjct: 306 AKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEKGWDLN 365
Query: 362 LGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421
LGE+ RIWKGGCIIRA+FLDRIKKAY RNP+LA+++VDP+FAKE+++RQ+AWRRVV LAI
Sbjct: 366 LGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRVVGLAI 425
Query: 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQ 481
++GISTPGM +SLAYFDTYRR RLPANLVQAQRD FGAHTYER D G++HTEW K+A++
Sbjct: 426 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARK 485
Query: 482 SK 483
S+
Sbjct: 486 SQ 487
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q9SH69|6PGD1_ARATH 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic OS=Arabidopsis thaliana GN=At1g64190 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/481 (75%), Positives = 423/481 (87%), Gaps = 3/481 (0%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EGNLP+ G + P F
Sbjct: 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQYSPRDF 66
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQ+PR +I+LVKAG+PVDQTI S YME GDCIIDGGNEWY+NTERR + GL
Sbjct: 67 VLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQKGL 126
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSF+AY +I+DIL KVAAQV D GPCVTY+G+GGSGN
Sbjct: 127 LYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIGEGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLI+EAYDVLK+VG LSNEEL ++F+EWN GEL SFL+EIT+DIF
Sbjct: 186 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEITSDIFR 245
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
+KD+ GDG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLK+ER A
Sbjct: 246 VKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENA 305
Query: 304 AKVFRSSGIGDVL--AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
AKV R +G+ + + A +DKK+L+DDVRQALYASKICSYAQGMNL+RAKS+EK W+L
Sbjct: 306 AKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEKSWNLN 365
Query: 362 LGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421
GEL RIWKGGCIIRA+FLDRIKKAY RNPDLA+++VDPEFAKE+++RQ+AWRRVV LA+
Sbjct: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRVVGLAV 425
Query: 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQ 481
++GISTPGM +SLAYFDTYRR RLPANLVQAQRD FGAHTYER D G++HTEW K+A++
Sbjct: 426 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARK 485
Query: 482 S 482
+
Sbjct: 486 N 486
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q94KU2|6PGD2_SPIOL 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Spinacia oleracea GN=pgdP PE=1 SV=1 | Back alignment and function description |
|---|
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/484 (75%), Positives = 421/484 (86%), Gaps = 3/484 (0%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M ++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EG+LPL G + P
Sbjct: 46 MAASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTP 105
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
FV SI++PR I++LVKAGSPVDQTI +L+ +ME GD IIDGGNEWY+NTERR
Sbjct: 106 RDFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHS 165
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
GLLYLGMGVSGGEEGAR+GPSLMPGG F+AY +I+ IL KVAAQV D GPCVTY+G+GG
Sbjct: 166 NGLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGG 224
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
SGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG LSNEEL Q+F EWNK EL SFL+EITAD
Sbjct: 225 SGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITAD 284
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
IF +KDD DG LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLKEER
Sbjct: 285 IFKVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 344
Query: 301 VEAAKVFRSSGIGDVLA--EQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW 358
AAK+ ++G+ + + VDKK+LIDDVRQALYASKICSYAQGMNL+RAKS E GW
Sbjct: 345 ENAAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGW 404
Query: 359 DLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVC 418
DL LGEL RIWKGGCIIRA+FLD IK+AY RNP+LA+++VDPEFAKE+++RQ+AWRRVV
Sbjct: 405 DLNLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVG 464
Query: 419 LAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKI 478
LA+++GISTPGM +SLAYFDTYRR RLPANLVQAQRDYFGAHTYERVD+ GS+HTEW K+
Sbjct: 465 LAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKL 524
Query: 479 AKQS 482
A++S
Sbjct: 525 ARKS 528
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|Q2R480|6PGD2_ORYSJ 6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic OS=Oryza sativa subsp. japonica GN=G6PGH2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/483 (70%), Positives = 396/483 (81%), Gaps = 5/483 (1%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G DP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
YLGMGVSGGEEGAR GPSLMPGG +AY +I DIL K AAQ D G CVT+VG GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGI 244
VKM+HNGIEYGDMQLIAEAYDVL+ VG LSN E+ VF+EWN+GEL SFL+EITADIF +
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 245 KDD---KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERV 301
D G G LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTI +SLD R+LSGLK+ERV
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERV 321
Query: 302 EAAKVFRSSGIGDVLAEQ-TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
AA V + G+ L E VDKK L+D VRQALYASKICSYAQGMNL+RAKS+EKGW+L
Sbjct: 322 AAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
L EL RIWKGGCIIRA FLDRIKKAYDRNP+LAN++VD EFA+E+++RQ+AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480
+ +GISTPGMS+SL+YFDTYR RLPANL+QAQRD FGAHTYER+D GSFHTEW K+A+
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLAR 501
Query: 481 QSK 483
+S
Sbjct: 502 KSN 504
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P21577|6PGD_SYNE7 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechococcus elongatus (strain PCC 7942) GN=gnd PE=1 SV=4 | Back alignment and function description |
|---|
Score = 540 bits (1392), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/479 (56%), Positives = 343/479 (71%), Gaps = 11/479 (2%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKQEGNLPLYGFHD 59
M + GL GLAVMG+NLALNI GF ++VYNRT K + +RA+ + +P Y D
Sbjct: 1 MALQQFGLIGLAVMGENLALNIERNGFSLTVYNRTAEKTEAFMADRAQGKNIVPAYSLED 60
Query: 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA 119
FV S+++PR I+++VKAG PVD ++ L ++ GD IIDGGN + +TERR K +
Sbjct: 61 ---FVASLERPRRILVMVKAGGPVDAVVEQLKPLLDPGDLIIDGGNSLFTDTERRVKDLE 117
Query: 120 ELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG 179
LGL ++GMGVSGGEEGA GPSLMPGG+ AY+ +E I+ +AAQV D GPCVTY+G G
Sbjct: 118 ALGLGFMGMGVSGGEEGALNGPSLMPGGTQAAYEAVEPIVRSIAAQV-DDGPCVTYIGPG 176
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKG-ELLSFLIEIT 238
GSG++VKM+HNGIEYGDMQLIAEAYD+LKSV L+ EL VF+ WNK EL SFLIEIT
Sbjct: 177 GSGHYVKMVHNGIEYGDMQLIAEAYDLLKSVAGLNASELHDVFAAWNKTPELDSFLIEIT 236
Query: 239 ADIFGIKDDKGDGY-LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLK 297
ADIF DD G G LV+ +LD G KGTG+WTV+ A ++ VA PTI ++++AR LS +K
Sbjct: 237 ADIFTKVDDLGTGQPLVELILDAAGQKGTGRWTVETALEIGVAIPTIIAAVNARILSSIK 296
Query: 298 EERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 357
ER A+++ G + + D++ ID VR ALY SKICSYAQGM L+ S
Sbjct: 297 AERQAASEILS----GPITEPFSGDRQAFIDSVRDALYCSKICSYAQGMALLAKASQVYN 352
Query: 358 WDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVV 417
+ L LGEL RIWKGGCIIRA FL++IK+AYD +P LAN+L+ PEF + I++RQ AWRRV+
Sbjct: 353 YGLNLGELARIWKGGCIIRAGFLNKIKQAYDADPTLANLLLAPEFRQTILDRQLAWRRVI 412
Query: 418 CLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
+A GI P S+SL YFD+YRR+RLP NL QAQRDYFGAHTYER D SGSFH +WF
Sbjct: 413 AIAAERGIPVPAFSASLDYFDSYRRDRLPQNLTQAQRDYFGAHTYERTDRSGSFHAQWF 471
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechococcus elongatus (strain PCC 7942) (taxid: 1140) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P80859|6PGD2_BACSU 6-phosphogluconate dehydrogenase, decarboxylating 2 OS=Bacillus subtilis (strain 168) GN=yqjI PE=1 SV=4 | Back alignment and function description |
|---|
Score = 525 bits (1353), Expect = e-148, Method: Compositional matrix adjust.
Identities = 259/477 (54%), Positives = 347/477 (72%), Gaps = 8/477 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ GLAVMG+NLALNI +GF +SVYNR++SK +E ++ AK + + G +
Sbjct: 1 MSKQQIGVIGLAVMGKNLALNIESRGFSVSVYNRSSSKTEEFLQEAKGKN---VVGTYSI 57
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++ PR I+++VKAG+ D TI++L ++EK D +IDGGN +Y++T+RR K +AE
Sbjct: 58 EEFVQSLETPRKILLMVKAGTATDATIQSLLPHLEKDDILIDGGNTYYKDTQRRNKELAE 117
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+ ++G GVSGGEEGA GPS+MPGG EA++ ++ IL ++A+V D PC TY+G G
Sbjct: 118 SGIHFIGTGVSGGEEGALKGPSIMPGGQKEAHELVKPILEAISAKV-DGEPCTTYIGPDG 176
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
+G++VKM+HNGIEYGDMQLI+E+Y +LK V LS +EL +VF+EWNKGEL S+LIEITAD
Sbjct: 177 AGHYVKMVHNGIEYGDMQLISESYFILKQVLGLSADELHEVFAEWNKGELDSYLIEITAD 236
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
IF KD++ LVD +LDK G KGTGKWT Q A DL V P I S+ ARF+S +KEER
Sbjct: 237 IFTKKDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLPIITESVFARFISAMKEER 296
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V+A+ + + V T +K++LI+ VR+AL+ SKICSYAQG ++A S E WDL
Sbjct: 297 VKASGLLSGPEVKPV----TENKEELIEAVRKALFMSKICSYAQGFAQMKAASEEYNWDL 352
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
K GE+ I++GGCIIRA FL +IK+AYDR P+L N+L+D F + Q A R+V+ LA
Sbjct: 353 KYGEIAMIFRGGCIIRAAFLQKIKEAYDREPELDNLLLDSYFKNIVESYQGALRQVISLA 412
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477
+ G+ P SS+LAY+D+YR LPANL+QAQRDYFGAHTYER D G FHTEW K
Sbjct: 413 VAQGVPVPSFSSALAYYDSYRTAVLPANLIQAQRDYFGAHTYERTDKEGIFHTEWMK 469
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
| >sp|P52208|6PGD_SYNY3 6-phosphogluconate dehydrogenase, decarboxylating OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gnd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 515 bits (1326), Expect = e-145, Method: Compositional matrix adjust.
Identities = 265/482 (54%), Positives = 337/482 (69%), Gaps = 14/482 (2%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKQEGNLPLYGFHD 59
M + G+ GLAVMG+NLALN+ +GFPI+V+NR+ +K ++ ERA + + +
Sbjct: 8 MTKRTFGVIGLAVMGENLALNVESRGFPIAVFNRSPNKTEKFMAERAVGKD---IKAAYT 64
Query: 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA 119
E FV +++PR I+++VKAG PVD I L +E+GD IIDGGN YE+TERR K +
Sbjct: 65 VEEFVQLLERPRKILVMVKAGGPVDAVINELKPLLEEGDMIIDGGNSLYEDTERRTKDLE 124
Query: 120 ELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQV--PDSGPCVTYVG 177
GL ++GMGVSGGEEGA GPSLMPGG+ AYK +E IL K+AAQV PD+ CVT++G
Sbjct: 125 ATGLGFVGMGVSGGEEGALLGPSLMPGGTPAAYKELEPILTKIAAQVEDPDNPACVTFIG 184
Query: 178 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNK-GELLSFLIE 236
GG+G++VKM+HNGIEYGDMQLIAEAYD+LK+ LSNE+L +VF +WN+ EL SFLIE
Sbjct: 185 PGGAGHYVKMVHNGIEYGDMQLIAEAYDILKNGLGLSNEQLHEVFGQWNQTDELNSFLIE 244
Query: 237 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGL 296
I+ DIF KD + G+L+D +LD G KGTG+WTV +L V PTI ++++AR +S L
Sbjct: 245 ISTDIFAKKDPETGGHLIDYILDAAGQKGTGRWTVMSGLELGVPIPTIYAAVNARVMSSL 304
Query: 297 KEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEK 356
KEERV A+ + SG + D + I VR ALY SK+CSYAQGM LI S E
Sbjct: 305 KEERVAASG--QLSGPSKTFSG---DVEAWIPKVRDALYCSKMCSYAQGMALIAKASQEF 359
Query: 357 GWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRV 416
G+D+ L E+ RIWKGGCIIRA FLD+IKKA+ NP L N+L+ PEF + I++RQ WR V
Sbjct: 360 GYDVNLPEIARIWKGGCIIRAGFLDKIKKAFKDNPQLPNLLLAPEFKQSILDRQGPWREV 419
Query: 417 VCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS--FHTE 474
+ LA GI+ P SSSL YFD+YRR LP NL QAQRDYFGAHTYER D FHTE
Sbjct: 420 LMLANEMGIAVPAFSSSLDYFDSYRRAVLPQNLTQAQRDYFGAHTYERTDKPRGEFFHTE 479
Query: 475 WF 476
W
Sbjct: 480 WL 481
|
Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 484 | ||||||
| 356526585 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.993 | 0.963 | 0.925 | 0.0 | |
| 356526581 | 486 | PREDICTED: 6-phosphogluconate dehydrogen | 0.993 | 0.989 | 0.925 | 0.0 | |
| 225425051 | 485 | PREDICTED: 6-phosphogluconate dehydrogen | 0.993 | 0.991 | 0.931 | 0.0 | |
| 255579936 | 488 | 6-phosphogluconate dehydrogenase, putati | 0.991 | 0.983 | 0.920 | 0.0 | |
| 224127314 | 488 | predicted protein [Populus trichocarpa] | 0.991 | 0.983 | 0.916 | 0.0 | |
| 224099285 | 485 | predicted protein [Populus trichocarpa] | 0.993 | 0.991 | 0.923 | 0.0 | |
| 224079938 | 488 | predicted protein [Populus trichocarpa] | 0.991 | 0.983 | 0.918 | 0.0 | |
| 449447452 | 487 | PREDICTED: 6-phosphogluconate dehydrogen | 0.989 | 0.983 | 0.922 | 0.0 | |
| 356573791 | 499 | PREDICTED: 6-phosphogluconate dehydrogen | 0.991 | 0.961 | 0.897 | 0.0 | |
| 356573793 | 488 | PREDICTED: 6-phosphogluconate dehydrogen | 0.991 | 0.983 | 0.897 | 0.0 |
| >gi|356526585|ref|XP_003531897.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 938 bits (2424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/481 (92%), Positives = 473/481 (98%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP+YG+HDPE+F
Sbjct: 19 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 78
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
VHSIQKPRVIIMLVKAG+PVDQTIKTLS YMEKGDCIIDGGNEWYENTERR+K+VAELGL
Sbjct: 79 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 138
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSFEA+K+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 139 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 198
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ VFSEWNKGELLSFLIEITADIFG
Sbjct: 199 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 258
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTIE+SLDARFLSGLKEERVEA
Sbjct: 259 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 318
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF+S GIGD++ +Q VDKKKL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 319 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 378
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIK+AYDRNP+LAN+LVDPEFAKEII+RQSAWRRVVCLAINS
Sbjct: 379 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 438
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMS+SLAYFDTYRRERLPANLVQAQRDYFGAHTYERVD+ GS+HTEWFK+AKQS+
Sbjct: 439 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 498
Query: 484 I 484
I
Sbjct: 499 I 499
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526581|ref|XP_003531895.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Glycine max] gi|356526583|ref|XP_003531896.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/481 (92%), Positives = 473/481 (98%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP+YG+HDPE+F
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPVYGYHDPEAF 65
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
VHSIQKPRVIIMLVKAG+PVDQTIKTLS YMEKGDCIIDGGNEWYENTERR+K+VAELGL
Sbjct: 66 VHSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKSVAELGL 125
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSFEA+K+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSLMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ VFSEWNKGELLSFLIEITADIFG
Sbjct: 186 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSVFSEWNKGELLSFLIEITADIFG 245
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTIE+SLDARFLSGLKEERVEA
Sbjct: 246 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 305
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF+S GIGD++ +Q VDKKKL+DDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 306 AKVFKSGGIGDIVTDQPVDKKKLVDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 365
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIK+AYDRNP+LAN+LVDPEFAKEII+RQSAWRRVVCLAINS
Sbjct: 366 ELARIWKGGCIIRAIFLDRIKQAYDRNPNLANLLVDPEFAKEIIDRQSAWRRVVCLAINS 425
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMS+SLAYFDTYRRERLPANLVQAQRDYFGAHTYERVD+ GS+HTEWFK+AKQS+
Sbjct: 426 GISTPGMSASLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDIEGSYHTEWFKLAKQSR 485
Query: 484 I 484
I
Sbjct: 486 I 486
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225425051|ref|XP_002271021.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Vitis vinifera] gi|225425053|ref|XP_002270984.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2419), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/481 (93%), Positives = 472/481 (98%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGL+GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF
Sbjct: 5 SRIGLSGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 64
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V+SIQKPRVIIMLVKAG+PVDQTIKTLS Y+EKGDCIIDGGNEWYENTERR+KA+AELGL
Sbjct: 65 VNSIQKPRVIIMLVKAGAPVDQTIKTLSGYLEKGDCIIDGGNEWYENTERREKAMAELGL 124
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR+GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 125 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 184
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL+ VFSEWNKGELLSFLIEITADIF
Sbjct: 185 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRNVFSEWNKGELLSFLIEITADIFS 244
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKGDG+LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI SSLDARFLSGLKEERVEA
Sbjct: 245 IKDDKGDGFLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 304
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF+SSG +VL++QTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 305 AKVFKSSGFENVLSDQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 364
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIKKAYDRN DLAN+LVDPEFAKEI+ERQSAWRRVVCLAINS
Sbjct: 365 ELARIWKGGCIIRAIFLDRIKKAYDRNADLANLLVDPEFAKEIVERQSAWRRVVCLAINS 424
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFD+YRR+RLPANLVQAQRDYFGAHTYER+D +GSFHTEWFKIA+QSK
Sbjct: 425 GISTPGMSSSLAYFDSYRRDRLPANLVQAQRDYFGAHTYERIDTTGSFHTEWFKIAQQSK 484
Query: 484 I 484
I
Sbjct: 485 I 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579936|ref|XP_002530803.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] gi|223529624|gb|EEF31571.1| 6-phosphogluconate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 926 bits (2392), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/480 (92%), Positives = 465/480 (96%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EG+LPLYGFHDPESF
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKREGDLPLYGFHDPESF 67
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAG+PVDQTIKTLS YMEKGDCIIDGGNEWYENTERR+KA+A+LGL
Sbjct: 68 VKSIQKPRVIIMLVKAGAPVDQTIKTLSAYMEKGDCIIDGGNEWYENTERREKAMADLGL 127
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
YLGMGVSGGEEGAR GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 128 QYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKS+GKLSNEELQ VF+EWNKGELLSFLIEITADIFG
Sbjct: 188 FVKMVHNGIEYGDMQLIAEAYDVLKSIGKLSNEELQSVFAEWNKGELLSFLIEITADIFG 247
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI SSLDARFLSGLKEERVEA
Sbjct: 248 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF+S G GD+L +Q +DKKKL+DDVRQALYA+KICSYAQGMNLIRAKSIEK WDLKLG
Sbjct: 308 AKVFKSGGFGDILTDQVIDKKKLVDDVRQALYAAKICSYAQGMNLIRAKSIEKVWDLKLG 367
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRA+FLDRIKKAYDRN DLAN+LVDPEFAKEI++RQSAWRRVVCLAINS
Sbjct: 368 ELARIWKGGCIIRAVFLDRIKKAYDRNADLANLLVDPEFAKEIVDRQSAWRRVVCLAINS 427
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFD+YRRERLPANLVQAQRDYFGAHTYERVDM GSFHTEWFKIA+Q K
Sbjct: 428 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERVDMEGSFHTEWFKIARQLK 487
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224127314|ref|XP_002329247.1| predicted protein [Populus trichocarpa] gi|222870701|gb|EEF07832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/480 (91%), Positives = 467/480 (97%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV RAK+EG+LPLYGFHDPESF
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVVRAKKEGDLPLYGFHDPESF 67
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRV+IMLVKAGSPVDQTIKTLS Y+EKGDCIIDGGNEWYENTERR+KA+AELGL
Sbjct: 68 VKSIQKPRVVIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMAELGL 127
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPS+MPGGSFEA+K+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 128 LYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKLSN+EL+ VFSEWNKGELLSFL+EITADIFG
Sbjct: 188 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNDELRSVFSEWNKGELLSFLVEITADIFG 247
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI SSLDARFLSGLKEERVEA
Sbjct: 248 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF++ G GD+L +Q VDKK+LIDDVRQALYASKICSYAQGMNLIRAKS+EKGWDL+LG
Sbjct: 308 AKVFKAGGFGDILTDQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSMEKGWDLELG 367
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRA+FLDRIKKAYDRNPDLAN+LVDPEFAKEIIERQSAWRRVVCLAINS
Sbjct: 368 ELARIWKGGCIIRAVFLDRIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRVVCLAINS 427
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFDT+RRERLPANLVQAQRDYFGAHTYERVD+ GSFHTEWFKIA+Q K
Sbjct: 428 GISTPGMSSSLAYFDTFRRERLPANLVQAQRDYFGAHTYERVDVEGSFHTEWFKIARQLK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224099285|ref|XP_002311423.1| predicted protein [Populus trichocarpa] gi|222851243|gb|EEE88790.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/481 (92%), Positives = 467/481 (97%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT KVDETVERAKQEG+LPLYGFHDPESF
Sbjct: 5 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTLKVDETVERAKQEGDLPLYGFHDPESF 64
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVII+LVKAG+PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERR+KA+AELGL
Sbjct: 65 VKSIQKPRVIIILVKAGAPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERREKALAELGL 124
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGE+GAR+GPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 125 LYLGMGVSGGEDGARHGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYIGKGGSGN 184
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKL+NEEL QVFSEWNKGELLSFLIEITADIFG
Sbjct: 185 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLTNEELCQVFSEWNKGELLSFLIEITADIFG 244
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTI SSLD RFLSGLKEERVEA
Sbjct: 245 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIASSLDGRFLSGLKEERVEA 304
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF+SSGI D+LA+Q VDK+KLI DVRQALY SKICSYAQGMNLIRAKS EKGWDLKLG
Sbjct: 305 AKVFKSSGIIDMLADQVVDKEKLIYDVRQALYVSKICSYAQGMNLIRAKSAEKGWDLKLG 364
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
+LTRIWKGGCIIRA+FLDRIKKAYDRNP+L N+LVDPEFAKEIIERQSAWRRVV +AINS
Sbjct: 365 QLTRIWKGGCIIRAVFLDRIKKAYDRNPNLPNLLVDPEFAKEIIERQSAWRRVVSIAINS 424
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFDTYRR RLPANLVQAQRDYFGAHTYER+D+ GSFHTEWFKIAKQSK
Sbjct: 425 GISTPGMSSSLAYFDTYRRSRLPANLVQAQRDYFGAHTYERIDIDGSFHTEWFKIAKQSK 484
Query: 484 I 484
I
Sbjct: 485 I 485
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079938|ref|XP_002305978.1| predicted protein [Populus trichocarpa] gi|222848942|gb|EEE86489.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/480 (91%), Positives = 465/480 (96%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNR+TSKVDETVERAK+EG+LPLYGFHDPESF
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRSTSKVDETVERAKKEGDLPLYGFHDPESF 67
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAGSPVDQTIKTLS Y+EKGDCIIDGGNEWYENTERR+KA+AELGL
Sbjct: 68 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMAELGL 127
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPS+MPGGSFEA+K+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 128 LYLGMGVSGGEEGARNGPSMMPGGSFEAFKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL+ VF+EWNKGELLSFLIEITADIFG
Sbjct: 188 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELRSVFAEWNKGELLSFLIEITADIFG 247
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI SSLDARFLSGLKEERVEA
Sbjct: 248 IKDDKGEGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIASSLDARFLSGLKEERVEA 307
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF++ G GD+L Q VDKK+LIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 308 AKVFKAGGFGDILTGQVVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 367
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRA+FLD IKKAYDRNPDLAN+LVDPEFAKEIIERQSAWRRVVC+AI+S
Sbjct: 368 ELARIWKGGCIIRAVFLDWIKKAYDRNPDLANLLVDPEFAKEIIERQSAWRRVVCVAISS 427
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFDTYRR RLPANLVQAQRDYFGAHTYERVD+ GSFHTEWFKIA+Q K
Sbjct: 428 GISTPGMSSSLAYFDTYRRGRLPANLVQAQRDYFGAHTYERVDVEGSFHTEWFKIARQCK 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447452|ref|XP_004141482.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] gi|449529072|ref|XP_004171525.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/480 (92%), Positives = 457/480 (95%), Gaps = 1/480 (0%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK EGNLPLYGFHDPESF
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKAEGNLPLYGFHDPESF 67
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAG+PVDQTIKTLS Y+EKGDCIIDGGNEWYENTERR+KA+ ELGL
Sbjct: 68 VQSIQKPRVIIMLVKAGAPVDQTIKTLSAYLEKGDCIIDGGNEWYENTERREKAMGELGL 127
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGS+EA+K+IEDIL+KVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 128 LYLGMGVSGGEEGARNGPSLMPGGSYEAFKNIEDILVKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL QVFSEWNKGELLSFL+EITADIF
Sbjct: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHQVFSEWNKGELLSFLVEITADIFS 247
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDK DGYLVDKVLDKTGMKGTGKWTVQQAADLSVA PTI SSLDARFLSGLKEERVEA
Sbjct: 248 IKDDKADGYLVDKVLDKTGMKGTGKWTVQQAADLSVAVPTIASSLDARFLSGLKEERVEA 307
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF SG+ DVL Q VDK KLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 308 AKVF-GSGLNDVLVPQEVDKAKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 366
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIK+AYDR PDLAN+LVD EFAKEIIERQSAWRRVVCLAINS
Sbjct: 367 ELARIWKGGCIIRAIFLDRIKRAYDRKPDLANLLVDTEFAKEIIERQSAWRRVVCLAINS 426
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMSSSLAYFD+YRRERLPANLVQAQRDYFGAHTYER DM GSFHTEWFKIAKQ K
Sbjct: 427 GISTPGMSSSLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDMEGSFHTEWFKIAKQLK 486
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573791|ref|XP_003555039.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/480 (89%), Positives = 467/480 (97%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAKQEGNLP+YG+HDP+ F
Sbjct: 19 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYGYHDPKFF 78
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAG+PVDQTIKTLS ++EKGDCIIDGGNEWYENTERR+KA++ELGL
Sbjct: 79 VQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREKAMSELGL 138
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR+GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 139 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 198
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ FSEWNKGELLSFLIEITADIFG
Sbjct: 199 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIEITADIFG 258
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTIE+SLDARFLSGLKEERVEA
Sbjct: 259 IKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 318
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
+KVF+SSG ++L++Q VDKK+LIDDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 319 SKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 378
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIKKAYDRNP+LAN+LVDPEFAKEI++RQSAWRRVVCLAIN
Sbjct: 379 ELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRVVCLAINY 438
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
G STPGM++SLAYFDTYRRER+PANLVQAQRDYFGAHTYER+DM GSFHTEWFK+AKQS+
Sbjct: 439 GTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAKQSR 498
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356573793|ref|XP_003555040.1| PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 913 bits (2360), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/480 (89%), Positives = 467/480 (97%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT SKVDETVERAKQEGNLP+YG+HDP+ F
Sbjct: 8 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTASKVDETVERAKQEGNLPVYGYHDPKFF 67
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAG+PVDQTIKTLS ++EKGDCIIDGGNEWYENTERR+KA++ELGL
Sbjct: 68 VQSIQKPRVIIMLVKAGAPVDQTIKTLSAHLEKGDCIIDGGNEWYENTERREKAMSELGL 127
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR+GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGGSGN
Sbjct: 128 LYLGMGVSGGEEGARHGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGGSGN 187
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ FSEWNKGELLSFLIEITADIFG
Sbjct: 188 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQSAFSEWNKGELLSFLIEITADIFG 247
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
IKDDKG+G+LVDKVLDKTGMKGTGKWTVQQAA+LS+AAPTIE+SLDARFLSGLKEERVEA
Sbjct: 248 IKDDKGEGHLVDKVLDKTGMKGTGKWTVQQAAELSIAAPTIEASLDARFLSGLKEERVEA 307
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
+KVF+SSG ++L++Q VDKK+LIDDVR+ALYA+KICSYAQGMNLIRAKSIEKGWDLKLG
Sbjct: 308 SKVFKSSGFDEILSDQHVDKKQLIDDVRKALYAAKICSYAQGMNLIRAKSIEKGWDLKLG 367
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIKKAYDRNP+LAN+LVDPEFAKEI++RQSAWRRVVCLAIN
Sbjct: 368 ELARIWKGGCIIRAIFLDRIKKAYDRNPNLANLLVDPEFAKEIVDRQSAWRRVVCLAINY 427
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
G STPGM++SLAYFDTYRRER+PANLVQAQRDYFGAHTYER+DM GSFHTEWFK+AKQS+
Sbjct: 428 GTSTPGMAASLAYFDTYRRERVPANLVQAQRDYFGAHTYERIDMEGSFHTEWFKLAKQSR 487
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 484 | ||||||
| TAIR|locus:2074577 | 486 | AT3G02360 [Arabidopsis thalian | 0.993 | 0.989 | 0.873 | 2.4e-227 | |
| UNIPROTKB|Q9LI00 | 480 | G6PGH1 "6-phosphogluconate deh | 0.991 | 1.0 | 0.836 | 3.4e-219 | |
| TAIR|locus:2024542 | 487 | AT1G64190 [Arabidopsis thalian | 0.987 | 0.981 | 0.740 | 8.3e-193 | |
| TAIR|locus:2160422 | 487 | AT5G41670 [Arabidopsis thalian | 0.989 | 0.983 | 0.738 | 8.3e-193 | |
| UNIPROTKB|Q94KU2 | 537 | pgdP "6-phosphogluconate dehyd | 0.993 | 0.895 | 0.735 | 2.5e-191 | |
| UNIPROTKB|Q2R480 | 508 | G6PGH2 "6-phosphogluconate deh | 0.985 | 0.938 | 0.692 | 4.5e-178 | |
| TIGR_CMR|BA_0164 | 469 | BA_0164 "6-phosphogluconate de | 0.964 | 0.995 | 0.506 | 2.1e-125 | |
| GENEDB_PFALCIPARUM|PF14_0520 | 468 | PF14_0520 "6-phosphogluconate | 0.960 | 0.993 | 0.514 | 1.5e-124 | |
| UNIPROTKB|Q8IKT2 | 468 | PF14_0520 "6-phosphogluconate | 0.960 | 0.993 | 0.514 | 1.5e-124 | |
| UNIPROTKB|Q5ZIZ0 | 483 | PGD "6-phosphogluconate dehydr | 0.964 | 0.966 | 0.507 | 4.6e-121 |
| TAIR|locus:2074577 AT3G02360 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2194 (777.4 bits), Expect = 2.4e-227, P = 2.4e-227
Identities = 420/481 (87%), Positives = 450/481 (93%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EGNLPLYGFHDPESF
Sbjct: 6 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESF 65
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPRVIIMLVKAGSPVDQTIKTLS Y+EKGDCI+DGGNEWYENTERR+KAVAE G
Sbjct: 66 VKSIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGF 125
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPS+MPGGS+EAYK+IEDI+LKVAAQV DSGPCVTY+GKGGSGN
Sbjct: 126 LYLGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPCVTYIGKGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXX 243
FVKM+HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL VFS+WNKGEL SFL+EITA
Sbjct: 186 FVKMVHNGIEYGDMQLIAEAYDVLKSVGKLSNEELHSVFSDWNKGELESFLVEITADIFG 245
Query: 244 XXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
+LVDKVLDKTGMKGTGKWTVQQAA+LSV APTIESSLDARFLSGLK+ERV+A
Sbjct: 246 IKDDKGDGHLVDKVLDKTGMKGTGKWTVQQAAELSVPAPTIESSLDARFLSGLKDERVQA 305
Query: 304 AKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLG 363
AKVF++ G GD+L +Q VDKK+L+DDVR+ALYASKICSYAQGMNLIRAKSIEKGW LKLG
Sbjct: 306 AKVFKAGGFGDILTDQKVDKKQLVDDVRKALYASKICSYAQGMNLIRAKSIEKGWGLKLG 365
Query: 364 ELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINS 423
EL RIWKGGCIIRAIFLDRIK+AYDRN +LAN+LVDPEFAKEIIERQSAWRRVVCLAINS
Sbjct: 366 ELARIWKGGCIIRAIFLDRIKQAYDRNAELANLLVDPEFAKEIIERQSAWRRVVCLAINS 425
Query: 424 GISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQSK 483
GISTPGMS+SLAYFD+YRRERLPANLVQAQRDYFGAHTYER D+ GSFHTEWFKIA+QSK
Sbjct: 426 GISTPGMSASLAYFDSYRRERLPANLVQAQRDYFGAHTYERTDVEGSFHTEWFKIARQSK 485
Query: 484 I 484
I
Sbjct: 486 I 486
|
|
| UNIPROTKB|Q9LI00 G6PGH1 "6-phosphogluconate dehydrogenase, decarboxylating 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 2117 (750.3 bits), Expect = 3.4e-219, P = 3.4e-219
Identities = 405/484 (83%), Positives = 446/484 (92%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV+RAK EGNLP+YGFHDP
Sbjct: 1 MAVTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDP 60
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
SFV+SIQKPRV+IMLVKAG+PVDQTI TL+ ++E+GDCIIDGGNEWYENTERR+KA+ E
Sbjct: 61 ASFVNSIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEE 120
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
GLLYLGMGVSGGEEGAR GPSLMPGGSFEAYK+IEDILLKVAAQVPDSGPCVTY+GKGG
Sbjct: 121 RGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPCVTYIGKGG 180
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
SGNFVKM+HNGIEYGDMQLI+EAYDVLKSVGKL+N ELQQVFSEWNKGELLSFLIEITA
Sbjct: 181 SGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLSFLIEITAD 240
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
+LVDKVLDKTGMKGTGKWTVQQAA+LSVAAPTIE+SLD+RFLSGLK+ER
Sbjct: 241 IFSIKDDQGSGHLVDKVLDKTGMKGTGKWTVQQAAELSVAAPTIEASLDSRFLSGLKDER 300
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
VEAAKVF+ GD + VDK +LI+DVRQALYASKICSYAQGMN+I+AKS+EKGW L
Sbjct: 301 VEAAKVFQ----GDFSSNLPVDKAQLIEDVRQALYASKICSYAQGMNIIKAKSMEKGWSL 356
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
LGEL RIWKGGCIIRAIFLDRIKKAYDRN DLAN+LVDPEFA+EI++RQ+AWRRVVCLA
Sbjct: 357 NLGELARIWKGGCIIRAIFLDRIKKAYDRNSDLANLLVDPEFAQEIMDRQAAWRRVVCLA 416
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480
IN+G+STPGMS+SLAYFD+YRR+RLPANLVQAQRDYFGAHTYERVDM GSFHTEWFKIA+
Sbjct: 417 INNGVSTPGMSASLAYFDSYRRDRLPANLVQAQRDYFGAHTYERVDMPGSFHTEWFKIAR 476
Query: 481 QSKI 484
+K+
Sbjct: 477 AAKM 480
|
|
| TAIR|locus:2024542 AT1G64190 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
Identities = 356/481 (74%), Positives = 413/481 (85%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET++RA EGNLP+ G + P F
Sbjct: 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQYSPRDF 66
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQ+PR +I+LVKAG+PVDQTI S YME GDCIIDGGNEWY+NTERR + GL
Sbjct: 67 VLSIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQKGL 126
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSF+AY +I+DIL KVAAQV D GPCVTY+G+GGSGN
Sbjct: 127 LYLGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVED-GPCVTYIGEGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXX 243
FVKM+HNGIEYGDMQLI+EAYDVLK+VG LSNEEL ++F+EWN GEL SFL+EIT+
Sbjct: 186 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELAEIFTEWNSGELESFLVEITSDIFR 245
Query: 244 XXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLK+ER A
Sbjct: 246 VKDEFGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENA 305
Query: 304 AKVFRSSGIGDVL--AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
AKV R +G+ + + A +DKK+L+DDVRQALYASKICSYAQGMNL+RAKS+EK W+L
Sbjct: 306 AKVLREAGLKEEIGSASSGIDKKRLVDDVRQALYASKICSYAQGMNLLRAKSLEKSWNLN 365
Query: 362 LGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421
GEL RIWKGGCIIRA+FLDRIKKAY RNPDLA+++VDPEFAKE+++RQ+AWRRVV LA+
Sbjct: 366 FGELARIWKGGCIIRAVFLDRIKKAYQRNPDLASLVVDPEFAKEMVQRQAAWRRVVGLAV 425
Query: 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQ 481
++GISTPGM +SLAYFDTYRR RLPANLVQAQRD FGAHTYER D G++HTEW K+A++
Sbjct: 426 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARK 485
Query: 482 S 482
+
Sbjct: 486 N 486
|
|
| TAIR|locus:2160422 AT5G41670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1868 (662.6 bits), Expect = 8.3e-193, P = 8.3e-193
Identities = 356/482 (73%), Positives = 416/482 (86%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGLAGLAVMGQNLALNIA+KGFPISVYNRTTSKVDET++RA EG LP+ G + P F
Sbjct: 7 SRIGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGKLPVAGQYSPRDF 66
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQ+PR +I+LVKAG+PVDQTI LS YME GDCIIDGGNEWY+NTERR + GL
Sbjct: 67 VLSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKKGL 126
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSF AY +++DIL KVAAQV D GPCVTY+G+GGSGN
Sbjct: 127 LYLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVED-GPCVTYIGEGGSGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXX 243
FVKM+HNGIEYGDMQLI+EAYDVLK+VG LSN+EL ++F+EWN+GEL SFL+EIT+
Sbjct: 186 FVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNDELAEIFTEWNRGELESFLVEITSDIFR 245
Query: 244 XXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLK+ER A
Sbjct: 246 VKDDYGDGELVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKDERENA 305
Query: 304 AKVFRSSGIGDVL--AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
AKV +G+ + + A + VDKK+LIDDVRQALYASKICSYAQGMNL+RAKS+EKGWDL
Sbjct: 306 AKVLEEAGLKEDIGSASRGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSLEKGWDLN 365
Query: 362 LGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421
LGE+ RIWKGGCIIRA+FLDRIKKAY RNP+LA+++VDP+FAKE+++RQ+AWRRVV LAI
Sbjct: 366 LGEMARIWKGGCIIRAVFLDRIKKAYQRNPNLASLVVDPDFAKEMVQRQAAWRRVVGLAI 425
Query: 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQ 481
++GISTPGM +SLAYFDTYRR RLPANLVQAQRD FGAHTYER D G++HTEW K+A++
Sbjct: 426 SAGISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARK 485
Query: 482 SK 483
S+
Sbjct: 486 SQ 487
|
|
| UNIPROTKB|Q94KU2 pgdP "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
Identities = 356/484 (73%), Positives = 412/484 (85%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M ++IGL GLAVMGQNLALNIAEKGFPISVYNRT SKVDET++RAK EG+LPL G + P
Sbjct: 46 MAASQIGLVGLAVMGQNLALNIAEKGFPISVYNRTASKVDETLDRAKSEGDLPLSGHYTP 105
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
FV SI++PR I++LVKAGSPVDQTI +L+ +ME GD IIDGGNEWY+NTERR
Sbjct: 106 RDFVLSIERPRSIVILVKAGSPVDQTIASLASFMEPGDTIIDGGNEWYQNTERRLSDAHS 165
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
GLLYLGMGVSGGEEGAR+GPSLMPGG F+AY +I+ IL KVAAQV D GPCVTY+G+GG
Sbjct: 166 NGLLYLGMGVSGGEEGARFGPSLMPGGDFQAYDNIQHILKKVAAQV-DDGPCVTYIGEGG 224
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
SGNFVKM+HNGIEYGDMQLI+EAYDVLK+VG LSNEEL Q+F EWNK EL SFL+EITA
Sbjct: 225 SGNFVKMVHNGIEYGDMQLISEAYDVLKNVGGLSNEELGQIFDEWNKSELESFLVEITAD 284
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
LVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLD R+LSGLKEER
Sbjct: 285 IFKVKDDLADGGLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDCRYLSGLKEER 344
Query: 301 VEAAKVFRSSGIGDVL--AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGW 358
AAK+ ++G+ + + VDKK+LIDDVRQALYASKICSYAQGMNL+RAKS E GW
Sbjct: 345 ENAAKILEAAGMKEEVNAIRGGVDKKRLIDDVRQALYASKICSYAQGMNLLRAKSAEMGW 404
Query: 359 DLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVC 418
DL LGEL RIWKGGCIIRA+FLD IK+AY RNP+LA+++VDPEFAKE+++RQ+AWRRVV
Sbjct: 405 DLNLGELARIWKGGCIIRAVFLDSIKQAYQRNPNLASLVVDPEFAKEMVQRQAAWRRVVG 464
Query: 419 LAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKI 478
LA+++GISTPGM +SLAYFDTYRR RLPANLVQAQRDYFGAHTYERVD+ GS+HTEW K+
Sbjct: 465 LAVSAGISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKL 524
Query: 479 AKQS 482
A++S
Sbjct: 525 ARKS 528
|
|
| UNIPROTKB|Q2R480 G6PGH2 "6-phosphogluconate dehydrogenase, decarboxylating 2, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1729 (613.7 bits), Expect = 4.5e-178, P = 4.5e-178
Identities = 334/482 (69%), Positives = 389/482 (80%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
RIGLAGLA MGQNLALNIAEKGFPISVYNRT +KVD TV RA+ EG LP+ G DP FV
Sbjct: 23 RIGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFV 82
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
S+ +PR +++LV+AG VD TI L Y++ GD I+DGGNEWY+NTERR + A G+L
Sbjct: 83 LSLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGIL 142
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
YLGMGVSGGEEGAR GPSLMPGG +AY +I DIL K AAQ D G CVT+VG GG+GNF
Sbjct: 143 YLGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTED-GACVTFVGPGGAGNF 201
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXXX 244
VKM+HNGIEYGDMQLIAEAYDVL+ VG LSN E+ VF+EWN+GEL SFL+EITA
Sbjct: 202 VKMVHNGIEYGDMQLIAEAYDVLRRVGGLSNSEIADVFAEWNRGELESFLVEITADIFTV 261
Query: 245 XX---XXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERV 301
LVDK+LDKTGMKGTGKWTVQQAA+L++AAPTI +SLD R+LSGLK+ERV
Sbjct: 262 ADPLDGSGGGGLVDKILDKTGMKGTGKWTVQQAAELAIAAPTIAASLDGRYLSGLKDERV 321
Query: 302 EAAKVFRSSGIGDVLAEQ-TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
AA V + G+ L E VDKK L+D VRQALYASKICSYAQGMNL+RAKS+EKGW+L
Sbjct: 322 AAAGVLEAEGMPSGLLETINVDKKMLVDRVRQALYASKICSYAQGMNLLRAKSVEKGWNL 381
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
L EL RIWKGGCIIRA FLDRIKKAYDRNP+LAN++VD EFA+E+++RQ+AWR VV A
Sbjct: 382 NLAELARIWKGGCIIRAKFLDRIKKAYDRNPELANLIVDREFAREMVQRQNAWRWVVARA 441
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480
+ +GISTPGMS+SL+YFDTYR RLPANL+QAQRD FGAHTYER+D GSFHTEW K+A+
Sbjct: 442 VEAGISTPGMSASLSYFDTYRCSRLPANLIQAQRDLFGAHTYERIDRPGSFHTEWTKLAR 501
Query: 481 QS 482
+S
Sbjct: 502 KS 503
|
|
| TIGR_CMR|BA_0164 BA_0164 "6-phosphogluconate dehydrogenase, decarboxylating" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 1232 (438.7 bits), Expect = 2.1e-125, P = 2.1e-125
Identities = 241/476 (50%), Positives = 333/476 (69%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M +IG+ G+ VMG++LALN KG+ +++Y+ + KVDET+E + + L G H
Sbjct: 1 MENLQIGVVGVGVMGKSLALNFESKGYSVALYDISKEKVDETIEENRGKN---LVGTHIV 57
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV+S++ PR I+++V AG D+ I +L +++KGD +IDGGN ++ +T RR K +AE
Sbjct: 58 EEFVNSLESPRKILLMVNAGEITDKAIDSLVPHLDKGDILIDGGNTYFVDTIRRNKRLAE 117
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+ ++G GVSGGEEGA GPS+MPGG +AY+ ++D+L ++A+V ++ PC +Y+G G
Sbjct: 118 EGINFIGAGVSGGEEGALKGPSIMPGGQKDAYEKVKDMLENISAKV-NNEPCCSYIGPNG 176
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G++VKM+HNGIEYGDMQLI EAY LK L+ EE ++F+EWNKGEL S+LIEITA
Sbjct: 177 AGHYVKMVHNGIEYGDMQLICEAYFFLKQTLDLTAEEFHEIFAEWNKGELNSYLIEITAD 236
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
LVD +LD G KGTGKWT Q A DL ++ P I S+ AR +S LKEER
Sbjct: 237 IFKKKDEETGKPLVDVILDTAGQKGTGKWTSQSALDLGISLPIITESVFARCISALKEER 296
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV SG D A V+K +LI+ VRQALY SKICSYAQG ++A S E W+L
Sbjct: 297 VNASKVL--SGPKDKTAIG-VEKAELIEAVRQALYMSKICSYAQGFTQLKAASEEYNWNL 353
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIER-QSAWRRVVCL 419
G ++ +W+GGCIIRA FL IK+AY+ N DL N+L+DP F KEI+E Q R+++ +
Sbjct: 354 DFGSISMLWRGGCIIRAAFLQNIKEAYETNTDLPNLLLDPYF-KEIVESYQGGLRQIISM 412
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
A+ GI P S++++Y+D+YR +LPANL+QAQRDYFGAHTY+RVD G+FHT+W
Sbjct: 413 AVQQGIPIPAFSAAISYYDSYRTAKLPANLLQAQRDYFGAHTYKRVDKEGTFHTKW 468
|
|
| GENEDB_PFALCIPARUM|PF14_0520 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating, putative" [Plasmodium falciparum (taxid:5833)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 242/470 (51%), Positives = 317/470 (67%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E NL +YG+ E ++
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
+++KPR +I+L+KAG VD+ I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 126 LGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFV 185
L MGVSGGE GARYG S MPGGS AY +++IL K +AQV +S PCVTY+G G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 186 KMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXXXX 245
KM+HNGIEYGDMQLI+E+Y ++K + K N++L +VF++WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 246 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAK 305
YLVD +LD G KGTGKWT+ +A + + PT+ ++LDAR +S KE R +A
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 306 VFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 365
F I L + D +D+ ALY KI SY QG+ L++ S E W L LGE+
Sbjct: 302 NFNKDNI---LIDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEI 358
Query: 366 TRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGI 425
RIW+GGCIIRA+FLDRI AY N L + +D EF+ +I + + R++V +A I
Sbjct: 359 ARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSI 418
Query: 426 STPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
P S+SLAYF + LP NLVQAQRDYFG+HTY R D G++HT W
Sbjct: 419 PIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q8IKT2 PF14_0520 "6-phosphogluconate dehydrogenase, decarboxylating" [Plasmodium falciparum 3D7 (taxid:36329)] | Back alignment and assigned GO terms |
|---|
Score = 1224 (435.9 bits), Expect = 1.5e-124, P = 1.5e-124
Identities = 242/470 (51%), Positives = 317/470 (67%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
IGL GLAVMGQNL+LNI+ KGF I VYNRT + +ET++RAK+E NL +YG+ E ++
Sbjct: 4 IGLIGLAVMGQNLSLNISSKGFKIGVYNRTYERTEETMKRAKEE-NLVVYGYKTVEELIN 62
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
+++KPR +I+L+KAG VD+ I + + EKGD IIDGGNEWY N+ERR K E + Y
Sbjct: 63 NLKKPRKVILLIKAGPAVDENISNILKHFEKGDIIIDGGNEWYINSERRIKLCKEKDVEY 122
Query: 126 LGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFV 185
L MGVSGGE GARYG S MPGGS AY +++IL K +AQV +S PCVTY+G G SGN+V
Sbjct: 123 LAMGVSGGEAGARYGCSFMPGGSKYAYDCVKEILEKCSAQVGNS-PCVTYIGPGSSGNYV 181
Query: 186 KMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAXXXXXX 245
KM+HNGIEYGDMQLI+E+Y ++K + K N++L +VF++WN+G L S+LIEITA
Sbjct: 182 KMVHNGIEYGDMQLISESYVIMKHILKYDNQKLSEVFNKWNEGILNSYLIEITANILAKK 241
Query: 246 XXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAK 305
YLVD +LD G KGTGKWT+ +A + + PT+ ++LDAR +S KE R +A
Sbjct: 242 DDLTNNYLVDMILDIAGAKGTGKWTMLEATERGIPCPTMCAALDARNISVFKELRTKAES 301
Query: 306 VFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 365
F I L + D +D+ ALY KI SY QG+ L++ S E W L LGE+
Sbjct: 302 NFNKDNI---LIDPNEDLNDFENDLLNALYCCKIISYTQGLFLLKQVSEEMNWKLNLGEI 358
Query: 366 TRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGI 425
RIW+GGCIIRA+FLDRI AY N L + +D EF+ +I + + R++V +A I
Sbjct: 359 ARIWRGGCIIRAVFLDRIANAYKNNEKLELLFLDNEFSDDIKNKLPSLRKIVLMATKYSI 418
Query: 426 STPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
P S+SLAYF + LP NLVQAQRDYFG+HTY R D G++HT W
Sbjct: 419 PIPAFSASLAYFQMVTSQNLPLNLVQAQRDYFGSHTYRRTDREGNYHTLW 468
|
|
| UNIPROTKB|Q5ZIZ0 PGD "6-phosphogluconate dehydrogenase, decarboxylating" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
Identities = 242/477 (50%), Positives = 317/477 (66%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G H
Sbjct: 1 MAEADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVIGAHSL 58
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E V ++KPR II+LVKAGS VD I L +E GD IIDGGN Y +T RR K + +
Sbjct: 59 EEMVSKLKKPRRIILLVKAGSAVDDFINKLVPLLETGDIIIDGGNSEYRDTTRRCKELLQ 118
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
GLL++G GVSGGEEGARYGPSLMPGGS EA+ HI+ I +AA+V PC +VG+ G
Sbjct: 119 KGLLFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKTIFQSIAAKVGSGEPCCDWVGEEG 178
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAX 240
+G+FVKM+HNGIEYGDMQLI EAY ++K V + ++E+ QVF EWN EL SFLIEITA
Sbjct: 179 AGHFVKMVHNGIEYGDMQLICEAYHLMKDVVGMDHDEMSQVFEEWNNTELDSFLIEITAN 238
Query: 241 XXXXXXXXXXXYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
YL+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER
Sbjct: 239 ILKFKDKDGK-YLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDER 297
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V+A+K+ G L + + +KK ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 298 VQASKLLN----GPKLTQFSGNKKAFLEDIRKALYASKIISYAQGFMLLRQAAKEFGWTL 353
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIER-QSAWRRVVCL 419
G + +W+GGCIIR++FL +IK A+DRNP+L N+L+D +F K +E+ Q +WR V+
Sbjct: 354 NYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLD-DFFKTAVEKCQDSWRHVIST 412
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+ GI P +++L+++D YR E LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 413 GVQHGIPMPCFTTALSFYDGYRHEVLPANLIQAQRDYFGAHTYELLSKPGVFIHTNW 469
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9PKX7 | 6PGD_CHLMU | 1, ., 1, ., 1, ., 4, 4 | 0.4517 | 0.9834 | 0.9937 | yes | no |
| P96789 | 6PGD_LACLM | 1, ., 1, ., 1, ., 4, 4 | 0.5052 | 0.9669 | 0.9915 | yes | no |
| Q8TA03 | 6PGD_DICDI | 1, ., 1, ., 1, ., 4, 4 | 0.4926 | 0.9648 | 0.9472 | yes | no |
| P41580 | 6PGD_SHISO | 1, ., 1, ., 1, ., 4, 4 | 0.5066 | 0.9194 | 1.0 | yes | no |
| Q6GGI7 | 6PGD_STAAR | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
| P41582 | 6PGD_CITDI | 1, ., 1, ., 1, ., 4, 4 | 0.5110 | 0.9194 | 1.0 | yes | no |
| P41583 | 6PGD_CITFR | 1, ., 1, ., 1, ., 4, 4 | 0.5088 | 0.9194 | 1.0 | N/A | no |
| Q9LI00 | 6PGD1_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.8553 | 0.9917 | 1.0 | yes | no |
| P53319 | 6PGD2_YEAST | 1, ., 1, ., 1, ., 4, 4 | 0.4967 | 0.9504 | 0.9349 | yes | no |
| P70718 | 6PGD_AGGAC | 1, ., 1, ., 1, ., 4, 4 | 0.5 | 0.9628 | 0.9628 | yes | no |
| P57208 | 6PGD_BUCAI | 1, ., 1, ., 1, ., 4, 4 | 0.4736 | 0.9628 | 0.9957 | yes | no |
| P85968 | 6PGD_RAT | 1, ., 1, ., 1, ., 4, 4 | 0.4915 | 0.9669 | 0.9689 | yes | no |
| Q9FFR3 | 6PGD2_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7572 | 0.9896 | 0.9835 | no | no |
| P00350 | 6PGD_ECOLI | 1, ., 1, ., 1, ., 4, 4 | 0.5063 | 0.9648 | 0.9978 | N/A | no |
| Q931R3 | 6PGD_STAAM | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
| Q94KU1 | 6PGD1_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.8877 | 0.9896 | 0.9917 | N/A | no |
| Q94KU2 | 6PGD2_SPIOL | 1, ., 1, ., 1, ., 4, 4 | 0.7520 | 0.9938 | 0.8957 | N/A | no |
| P63335 | 6PGD_STAAW | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
| P63334 | 6PGD_STAAN | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
| Q5HP42 | 6PGD_STAEQ | 1, ., 1, ., 1, ., 4, 4 | 0.5222 | 0.9545 | 0.9871 | yes | no |
| P52209 | 6PGD_HUMAN | 1, ., 1, ., 1, ., 4, 4 | 0.4915 | 0.9669 | 0.9689 | yes | no |
| P52208 | 6PGD_SYNY3 | 1, ., 1, ., 1, ., 4, 4 | 0.5497 | 0.9669 | 0.9709 | N/A | no |
| P37754 | 6PGD9_ECOLX | 1, ., 1, ., 1, ., 4, 4 | 0.4968 | 0.9669 | 1.0 | yes | no |
| P37756 | 6PGD_SHIFL | 1, ., 1, ., 1, ., 4, 4 | 0.5063 | 0.9648 | 0.9978 | yes | no |
| P41574 | 6PGD_ESCVU | 1, ., 1, ., 1, ., 4, 4 | 0.5066 | 0.9194 | 1.0 | N/A | no |
| Q9SH69 | 6PGD1_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.7567 | 0.9876 | 0.9815 | no | no |
| P41581 | 6PGD_CITAM | 1, ., 1, ., 1, ., 4, 4 | 0.5110 | 0.9194 | 1.0 | N/A | no |
| Q89AX5 | 6PGD_BUCBP | 1, ., 1, ., 1, ., 4, 4 | 0.4474 | 0.9648 | 0.9978 | yes | no |
| Q9DCD0 | 6PGD_MOUSE | 1, ., 1, ., 1, ., 4, 4 | 0.4915 | 0.9669 | 0.9689 | yes | no |
| P80859 | 6PGD2_BACSU | 1, ., 1, ., 1, ., 4, 4 | 0.5429 | 0.9690 | 1.0 | yes | no |
| Q9FWA3 | 6GPD3_ARATH | 1, ., 1, ., 1, ., 4, 4 | 0.8981 | 0.9938 | 0.9897 | yes | no |
| P41577 | 6PGD_RAOTE | 1, ., 1, ., 1, ., 4, 4 | 0.5022 | 0.9194 | 1.0 | N/A | no |
| P41576 | 6PGD_KLEPN | 1, ., 1, ., 1, ., 4, 4 | 0.5031 | 0.9669 | 1.0 | yes | no |
| P21577 | 6PGD_SYNE7 | 1, ., 1, ., 1, ., 4, 4 | 0.5678 | 0.9669 | 0.9936 | yes | no |
| Q9ZHD9 | 6PGD_BUCAP | 1, ., 1, ., 1, ., 4, 4 | 0.4591 | 0.9648 | 0.9873 | yes | no |
| Q9CHU6 | 6PGD_LACLA | 1, ., 1, ., 1, ., 4, 4 | 0.5136 | 0.9669 | 0.9915 | yes | no |
| P41579 | 6PGD_SHIDY | 1, ., 1, ., 1, ., 4, 4 | 0.5066 | 0.9194 | 1.0 | yes | no |
| P41578 | 6PGD_SHIBO | 1, ., 1, ., 1, ., 4, 4 | 0.5044 | 0.9194 | 1.0 | yes | no |
| P14062 | 6PGD_SALTY | 1, ., 1, ., 1, ., 4, 4 | 0.5115 | 0.9669 | 1.0 | yes | no |
| Q6G954 | 6PGD_STAAS | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
| Q2R480 | 6PGD2_ORYSJ | 1, ., 1, ., 1, ., 4, 4 | 0.7039 | 0.9876 | 0.9409 | no | no |
| Q8CP47 | 6PGD_STAES | 1, ., 1, ., 1, ., 4, 4 | 0.5222 | 0.9545 | 0.9871 | yes | no |
| O13287 | 6PGD_CANAX | 1, ., 1, ., 1, ., 4, 4 | 0.5119 | 0.9338 | 0.8742 | N/A | no |
| Q17761 | 6PGD_CAEEL | 1, ., 1, ., 1, ., 4, 4 | 0.4726 | 0.9690 | 0.9690 | yes | no |
| Q5HFR2 | 6PGD_STAAC | 1, ., 1, ., 1, ., 4, 4 | 0.5158 | 0.9586 | 0.9914 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| estExt_fgenesh4_pm.C_1230010 | SubName- Full=Putative uncharacterized protein; (489 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_Genewise1_v1.C_LG_XIX0814 | hypothetical protein (190 aa) | • | • | • | 0.922 | ||||||
| estExt_fgenesh4_pg.C_LG_I2289 | SubName- Full=Putative uncharacterized protein; (226 aa) | • | • | • | 0.917 | ||||||
| fgenesh4_pg.C_LG_XII000285 | hypothetical protein (261 aa) | • | • | • | 0.914 | ||||||
| eugene3.00150082 | SubName- Full=Putative uncharacterized protein; (261 aa) | • | • | • | 0.914 | ||||||
| grail3.0006058601 | 6-phosphogluconolactonase (EC-3.1.1.31) (266 aa) | • | • | • | 0.910 | ||||||
| estExt_Genewise1_v1.C_1290095 | ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa) | • | • | 0.909 | |||||||
| gw1.XIII.1456.1 | annotation not avaliable (242 aa) | • | • | 0.901 | |||||||
| gw1.70.218.1 | hypothetical protein (264 aa) | • | • | 0.900 | |||||||
| grail3.0176001401 | ribose-5-phosphate isomerase (EC-5.3.1.6) (271 aa) | • | 0.899 | ||||||||
| fgenesh4_pg.C_LG_XI001338 | hypothetical protein (285 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 484 | |||
| PLN02350 | 493 | PLN02350, PLN02350, phosphogluconate dehydrogenase | 0.0 | |
| PRK09287 | 459 | PRK09287, PRK09287, 6-phosphogluconate dehydrogena | 0.0 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.0 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 0.0 | |
| TIGR00873 | 467 | TIGR00873, gnd, 6-phosphogluconate dehydrogenase ( | 0.0 | |
| pfam00393 | 290 | pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, | 0.0 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-75 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 5e-63 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 5e-59 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 7e-57 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 5e-52 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 3e-19 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 8e-10 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 9e-09 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 7e-07 | |
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 2e-06 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 1e-05 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 6e-05 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 6e-05 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 1e-04 |
| >gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 1035 bits (2678), Expect = 0.0
Identities = 412/482 (85%), Positives = 448/482 (92%), Gaps = 2/482 (0%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK+EGNLPLYGF DPE F
Sbjct: 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDF 66
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V SIQKPR +I+LVKAG+PVDQTIK LS YME GDCIIDGGNEWYENTERR K AE GL
Sbjct: 67 VLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGL 126
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGN 183
LYLGMGVSGGEEGAR GPSLMPGGSFEAYK+IEDIL KVAAQV D GPCVTY+G GG+GN
Sbjct: 127 LYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQV-DDGPCVTYIGPGGAGN 185
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243
FVKM+HNGIEYGDMQLI+EAYDVLKSVG LSNEEL +VF+EWNKGEL SFLIEITADIF
Sbjct: 186 FVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFS 245
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
+KDDKGDGYLVDK+LDKTGMKGTGKWTVQQAA+LSVAAPTI +SLDAR+LSGLKEERV A
Sbjct: 246 VKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAA 305
Query: 304 AKVFRSSGIGDVL-AEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
AKVF+ +G+ D+L A+ VDKK+LIDDVRQALYASKICSYAQGMNLIRAKS+EKGW+L L
Sbjct: 306 AKVFKEAGLEDILSADSGVDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNL 365
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAIN 422
GEL RIWKGGCIIRA+FLDRIKKAYDRNPDLA++LVDPEFAKE++ERQ+AWRRVV LAIN
Sbjct: 366 GELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDPEFAKEMVERQAAWRRVVSLAIN 425
Query: 423 SGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAKQS 482
+GISTPGMS+SLAYFDTYRR RLPANLVQAQRDYFGAHTYERVD GSFHTEW K+A++S
Sbjct: 426 AGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLARKS 485
Query: 483 KI 484
KI
Sbjct: 486 KI 487
|
Length = 493 |
| >gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 783 bits (2025), Expect = 0.0
Identities = 269/462 (58%), Positives = 334/462 (72%), Gaps = 7/462 (1%)
Query: 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73
MG+NLALNIA G+ ++VYNRT K DE + + + + E FV S++KPR I
Sbjct: 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKI--VPAYTLEEFVASLEKPRKI 58
Query: 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133
+++VKAG+PVD I+ L +EKGD IIDGGN Y++T RR+K +AE G+ ++GMGVSGG
Sbjct: 59 LLMVKAGAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGG 118
Query: 134 EEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE 193
EEGA +GPS+MPGG EAY+ + IL K+AA+V D PCVTY+G G+G++VKM+HNGIE
Sbjct: 119 EEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGHYVKMVHNGIE 178
Query: 194 YGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYL 253
YGDMQLIAEAYD+LK LS EE+ VF+EWNKGEL S+LIEITADI KD++ L
Sbjct: 179 YGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPL 238
Query: 254 VDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIG 313
VD +LDK G KGTGKWT Q A DL V I ++ AR+LS LK++RV A+KV
Sbjct: 239 VDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVL-----S 293
Query: 314 DVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGC 373
A+ DK + I+DVRQALYASKI SYAQG L+RA S E GWDL LGE+ RIW+GGC
Sbjct: 294 GPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGC 353
Query: 374 IIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSS 433
IIRA FL +I AY+ NPDLAN+L+DP F + E Q A RRVV LA+ +GI P SS+
Sbjct: 354 IIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSA 413
Query: 434 LAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
L+Y+D+YR RLPANL+QAQRDYFGAHTYER D G FHTEW
Sbjct: 414 LSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEW 455
|
Length = 459 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 738 bits (1908), Expect = 0.0
Identities = 275/475 (57%), Positives = 347/475 (73%), Gaps = 8/475 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M++ IG+ GLAVMG NLALNIA+ G+ ++VYNRTT K DE + + N+ +
Sbjct: 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNI--VPAYSI 58
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++KPR I+++VKAG+PVD I+ L +EKGD IIDGGN Y++T RR K ++E
Sbjct: 59 EEFVASLEKPRKILLMVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSE 118
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+L++GMGVSGGEEGAR+GPS+MPGG EAY+ + IL K+AA+V D PC T++G G
Sbjct: 119 KGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTKIAAKV-DGEPCCTWIGPDG 177
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
+G+FVKM+HNGIEYGDMQLIAEAYD+LK LS EE+ +VF EWNKGEL S+LIEITAD
Sbjct: 178 AGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITAD 237
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
I KD++G LVDK+LDK G KGTGKWTV A DL V I ++ AR+LS LK+ER
Sbjct: 238 ILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDER 297
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV +G+ DK++ I+DVRQALYASKI SYAQG L+RA S E GWDL
Sbjct: 298 VAASKVLAGPKLGE-----PGDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDL 352
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
LGE+ IW+GGCIIR+ FLD+I A+D NP+LAN+L+ P F + E Q + RRVV A
Sbjct: 353 NLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAPYFKSILEEYQQSLRRVVAYA 412
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
+ +GI P SS+L+Y+D+YR RLPANL+QAQRDYFGAHTYER D G FHT W
Sbjct: 413 VEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNW 467
|
Length = 473 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 697 bits (1801), Expect = 0.0
Identities = 284/473 (60%), Positives = 357/473 (75%), Gaps = 4/473 (0%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
+ IGL GLAVMGQNLALNIA +GF ISVYNRT K +E V++AK EGN + G+H E
Sbjct: 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK-EGNTRVKGYHTLEE 59
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
V+S++KPR +I+L+KAG VD+TI L +EKGD IIDGGNEWY NTERR K E G
Sbjct: 60 LVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG 119
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
+LYLGMGVSGGEEGARYGPSLMPGG+ EAY H++DIL K +A+V DS PCVTYVG G SG
Sbjct: 120 ILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCSAKVGDS-PCVTYVGPGSSG 178
Query: 183 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIF 242
++VKM+HNGIEYGDMQLI+E+Y ++K + +SNEEL +VF++WN+G L S+LIEITA I
Sbjct: 179 HYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKIL 238
Query: 243 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVE 302
KDD G+ +LVDK+LD G KGTGKWTVQ+A + + PT+ +S+DAR +S LKEER +
Sbjct: 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTK 298
Query: 303 AAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
A+ +G +T DKK IDD++ ALY SKI SY QG LI+ S E GW+L L
Sbjct: 299 ASSHL--AGPNPANKTETEDKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNL 356
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAIN 422
GE+ RIW+GGCIIRA+FLDRIK A+ +NP L + +DP+F E+ +Q +WR+VV +A
Sbjct: 357 GEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDFNDELKNKQPSWRKVVSMATK 416
Query: 423 SGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
+GI TP S+SLAY+ YR + LPANLVQAQRDYFGAHTY+R+D G+FHT W
Sbjct: 417 NGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNW 469
|
Length = 470 |
| >gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 674 bits (1741), Expect = 0.0
Identities = 271/472 (57%), Positives = 333/472 (70%), Gaps = 10/472 (2%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
IG+ GLAVMG NLALN+A+ GF +SVYNRT K DE + + + G + E FV
Sbjct: 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKI--VGAYSIEEFVQ 59
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
S+++PR I+++VKAG+PVD I L +EKGD IIDGGN Y +TERR K + G+L+
Sbjct: 60 SLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF 119
Query: 126 LGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFV 185
+G GVSGGEEGAR GPS+MPGGS EA+ + I K+AA+V D PC T++G G+G++V
Sbjct: 120 VGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAAKV-DGEPCCTWIGPDGAGHYV 178
Query: 186 KMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIK 245
KM+HNGIEYGDMQLI EAYD+LK LSNEE+ +VF+EWN GEL S+LIEITADI K
Sbjct: 179 KMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKK 238
Query: 246 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAK 305
D+ G LVDK+LD G KGTGKWT A DL V I S+ AR+LS LKEERV A+K
Sbjct: 239 DEDG-KPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASK 297
Query: 306 VFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL 365
V G + E VDK++ I+DVRQALYASKI SYAQG L+R S E GWDL LGE+
Sbjct: 298 VLS----GPLAPEPAVDKEEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEI 353
Query: 366 TRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGI 425
IW+GGCIIR+ FLD+I KA+ NPDLAN+L+ P F + + QS WRRVV LAI GI
Sbjct: 354 ALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFKDALKDAQSGWRRVVALAIEYGI 413
Query: 426 STPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS--FHTEW 475
P S++L+++D YR RLPANL+QAQRDYFGAHTYER D FHT W
Sbjct: 414 PVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNW 465
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467 |
| >gnl|CDD|215895 pfam00393, 6PGD, 6-phosphogluconate dehydrogenase, C-terminal domain | Back alignment and domain information |
|---|
Score = 529 bits (1365), Expect = 0.0
Identities = 190/295 (64%), Positives = 226/295 (76%), Gaps = 5/295 (1%)
Query: 182 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADI 241
G++VKM+HNGIEYGDMQLIAEAYD+LK+V LSN+E+ VF EWNKGEL S+LIEITADI
Sbjct: 1 GHYVKMVHNGIEYGDMQLIAEAYDLLKTVLGLSNDEIADVFEEWNKGELDSYLIEITADI 60
Query: 242 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERV 301
KD+ G LVDK+LDK G KGTGKWTVQ A +L V P I ++ AR+LS LKEERV
Sbjct: 61 LRKKDEDG-KPLVDKILDKAGQKGTGKWTVQSALELGVPVPLITEAVFARYLSSLKEERV 119
Query: 302 EAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
A+KV G A+ DK + I+DVRQALYASKI SYAQG L+RA S E GW+L
Sbjct: 120 AASKVLS----GPKAAKDKGDKAEFIEDVRQALYASKIVSYAQGFMLLRAASKEYGWNLN 175
Query: 362 LGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421
LGE+ RIW+GGCIIRA FLD+IK AY++NPDL N+L+DP F KEI E Q +WRRVV +A+
Sbjct: 176 LGEIARIWRGGCIIRAQFLDKIKDAYEKNPDLPNLLLDPYFKKEIKEYQQSWRRVVAIAV 235
Query: 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
+GI P SS+L+Y+D+YR ERLPANL+QAQRDYFGAHTYER D G FHT W
Sbjct: 236 EAGIPVPAFSSALSYYDSYRTERLPANLIQAQRDYFGAHTYERTDKEGFFHTNWT 290
|
This family represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. Length = 290 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 239 bits (612), Expect = 1e-75
Identities = 104/291 (35%), Positives = 158/291 (54%), Gaps = 19/291 (6%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G+ GL MG N+A + G + Y+R E VE +EG G E V
Sbjct: 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRN----PEAVEALAEEG---ATGADSLEELV 54
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ PRV+ ++V AG D TI L+ + GD +IDGGN +Y++ RR + +AE G+
Sbjct: 55 AKLPAPRVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
++ +G SGG G G LM GG EA + +E I +A + D + G G+G+F
Sbjct: 115 FVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAEDG---YLHAGPVGAGHF 171
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELL-SFLIEITADIFG 243
VKM+HNGIEYG MQ AE +++L++ + +L V W +G ++ S+L+++TAD
Sbjct: 172 VKMVHNGIEYGMMQAYAEGFELLEASR--FDLDLAAVAEVWRRGSVIRSWLLDLTADAL- 228
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294
+D + V D G G+WTV++A DL+V AP I ++L RF S
Sbjct: 229 -AEDPKLDEISGYVED----SGEGRWTVEEAIDLAVPAPVIAAALFMRFRS 274
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 5e-63
Identities = 109/290 (37%), Positives = 157/290 (54%), Gaps = 20/290 (6%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
IG+ GL MG NL + + G + Y+ VE K EG + V
Sbjct: 3 IGMIGLGRMGANLVRRLLDGGHDVVGYDVNQ----TAVEELKDEGATGA---ASLDELVA 55
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
+ PR++ ++V AG D I L+ + GD +IDGGN Y+++ RR K +AE G+ +
Sbjct: 56 KLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHF 115
Query: 126 LGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFV 185
L +G SGG GA G LM GG EA + +E I +A + G Y G GSG+FV
Sbjct: 116 LDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA--PGEDG--YLYCGPSGSGHFV 171
Query: 186 KMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELL-SFLIEITADIFGI 244
KM+HNGIEYG MQ IAE +++LK+ + +L+ V WN G ++ S+L+++TA+ F
Sbjct: 172 KMVHNGIEYGMMQAIAEGFELLKNSP--FDYDLEAVAEVWNHGSVIRSWLLDLTAEAF-- 227
Query: 245 KDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294
K D L D++ + G G+WTV++A DL V AP I +L RF S
Sbjct: 228 ---KKDPDL-DQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRS 273
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 196 bits (499), Expect = 5e-59
Identities = 104/295 (35%), Positives = 154/295 (52%), Gaps = 28/295 (9%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++GL GL MG N+A + E G + Y+ E V+ A + G H E V
Sbjct: 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQ----EAVDVAGKLGITAR---HSLEELV 54
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
++ PR I ++V AG + IK L + GD ++DGGN Y++ RR + +AE G+
Sbjct: 55 SKLEAPRTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH 114
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
Y+ G SGG G R G LM GG E Y +E + +A P+ GP + G GSG+F
Sbjct: 115 YVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA---PE-GPGYVHAGPVGSGHF 170
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELL-SFLIEITADIFG 243
+KM+HNGIEYG MQ AE ++L + +++ V W G ++ S+L+++T
Sbjct: 171 LKMVHNGIEYGMMQAYAEGLELLD--KSDFDFDVEDVARLWRNGSVIRSWLLDLTVKAL- 227
Query: 244 IKDD----KGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294
+D GY+ D G G+WTV++A +L+VAAP I +SL RF S
Sbjct: 228 -AEDPKLAGIKGYVND--------SGEGRWTVEEAIELAVAAPVIAASLFMRFAS 273
|
Length = 299 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 185 bits (473), Expect = 7e-57
Identities = 69/177 (38%), Positives = 94/177 (53%), Gaps = 21/177 (11%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+IG GL VMG +ALN+ + G+ ++VYNRT KV+E V G P F
Sbjct: 1 AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEG-------AVGAASPAEF 53
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
V S V+I +V AG+ VD I L ++ GD IIDG ++T RR K +AE
Sbjct: 54 VASA---DVVITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAE 110
Query: 121 LGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYV 176
G+ +L VSGGEEGA G S+M GG EA++ ++ IL + A CVT+
Sbjct: 111 KGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGA-------CVTHY 160
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 5e-52
Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 21/291 (7%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++GL GL MG N+ +A++G Y+ V+ K++ G +
Sbjct: 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQD----AVKAMKEDRTT---GVANLRELS 54
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ PRV+ ++V G VD ++ L+ +EKGD +IDGGN +Y+++ RR K + E G+
Sbjct: 55 QRLSAPRVVWVMVPHGI-VDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH 113
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
L G SGG G G M GG EA+ E + VA + G Y G GSG+F
Sbjct: 114 LLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA--PEEQG--YLYCGPCGSGHF 169
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELL-SFLIEITADIFG 243
VKM+HNGIEYG M IAE +++L++ + ++ +V W +G ++ S+L+++TA F
Sbjct: 170 VKMVHNGIEYGMMAAIAEGFEILRN--SQFDFDIPEVARVWRRGSVIRSWLLDLTAIAF- 226
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294
+ D + + + G G+WTV A DL V AP I +SL +RF S
Sbjct: 227 --RESPD---LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFAS 272
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 55/211 (26%), Positives = 86/211 (40%), Gaps = 32/211 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+I GL +MG +A N+ + G ++VYNRT K E G P
Sbjct: 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK---AAELLAAAG---ATVAASPAEA 54
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERR 114
VI ML D ++ +V ++ G +ID E
Sbjct: 55 AAE--ADVVITMLPD-----DAAVR--AVLFGENGLLEGLKPGAIVIDMSTISPETAREL 105
Query: 115 QKAVAELGLLYLGMGVSGGEEGARYG-PSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCV 173
A+A GL +L VSGG GA G ++M GG EA++ + +L + +
Sbjct: 106 AAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKN-------I 158
Query: 174 TYVGKGGSGNFVKMIHNGIEYGDMQLIAEAY 204
+VG G+G K+ +N + G++ +AEA
Sbjct: 159 VHVGPVGAGQAAKLANNILLAGNIAALAEAL 189
|
Length = 286 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 8e-10
Identities = 54/214 (25%), Positives = 90/214 (42%), Gaps = 27/214 (12%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G GL +MG +++N+A+ G+ + V DE L G E+
Sbjct: 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADE----------LLAAGAVTAETAR 50
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYME---KGDCIIDGGNEWYENTERRQKAVAEL 121
++ VI +V V++ + +E G ++D + ++R KAV E
Sbjct: 51 QVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEK 110
Query: 122 GLLYLGMGVSGGEEGARYGP-SLMPGGS---FEAYKHIEDILLKVAAQVPDSGPCVTYVG 177
G+ YL VSGGE GA G S+M GG F+ K + + L G + VG
Sbjct: 111 GIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEAL----------GKNIVLVG 160
Query: 178 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 211
G G K+ + I +++ ++EA G
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAG 194
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 9e-09
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 21/187 (11%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G GL +MG+ ++ N+ + G+ + VY+R V E + + +
Sbjct: 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETA----------STAK 53
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYME---KGDCIIDGGNEWYENTERRQKAVAEL 121
++ VII ++ V + + +E G +ID + + A+
Sbjct: 54 AVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAK 113
Query: 122 GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+ L VSGGE A G S+M GG + D++ +A V + G G
Sbjct: 114 GIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGS-------VVHTGDIG 166
Query: 181 SGNFVKM 187
+GN K+
Sbjct: 167 AGNVTKL 173
|
Length = 296 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-07
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G GL +MG +A+N+A G + V T+ E L G E+
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHV---------TTIGPVADE--LLSLGAVSVETAR 50
Query: 65 HSIQKPRVIIMLVKAGSPVDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL 121
+ +I ++V V++ + + KG I+D + T+R + V EL
Sbjct: 51 QVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNEL 110
Query: 122 GLLYLGMGVSGGEEGARYGP-SLMPGGS---FEAYKHIEDILLKVAAQVPDSGPCVTYVG 177
G YL VSGGE GAR G S+M GG FE K + ++L G +T VG
Sbjct: 111 GGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELL----------GKNITLVG 160
Query: 178 KGGSGNFVKMIHNGIEYGDMQLIAEA 203
G G K+ + I +++ ++EA
Sbjct: 161 GNGDGQTCKVANQIIVALNIEAVSEA 186
|
Length = 292 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 54/205 (26%), Positives = 82/205 (40%), Gaps = 33/205 (16%)
Query: 10 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQK 69
GL MG +A N+ + G P+ V++ V+E V Q P +
Sbjct: 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGAD-------- 54
Query: 70 PRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERRQKAVAE 120
RVI ML AG V +SVY + KG +ID ++ + + A
Sbjct: 55 -RVITML-PAGQHV------ISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAA 106
Query: 121 LGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG 179
G +++ VSGG GAR G + M GG E + E +L + + + G
Sbjct: 107 HGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRN-------IVHCGDH 159
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAY 204
G+G K+ +N + M AEA
Sbjct: 160 GAGQAAKICNNMLLGISMIGTAEAM 184
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 341 SYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400
+ A+G L++ +D L + +W G +IR+ LD +A+ ++PDL +
Sbjct: 185 AIAEGFELLKNSP----FDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQI---- 236
Query: 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPAN-LVQAQRDYFGA 459
+ R V A++ G+ P ++ +L R++ A ++ A R+ FG
Sbjct: 237 ---SGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGG 293
Query: 460 HTYERVD 466
H ++ +
Sbjct: 294 HAVKKKN 300
|
Length = 300 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 12/125 (9%)
Query: 341 SYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400
+YA+G+ L+ +D + ++ R+W+ G +IR+ LD KA +P LA +
Sbjct: 185 AYAEGLELLDKSD----FDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGI---- 236
Query: 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPA-NLVQAQRDYFGA 459
K + R V AI ++ P +++SL + + +V A R+ FG
Sbjct: 237 ---KGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293
Query: 460 HTYER 464
H +
Sbjct: 294 HAVKT 298
|
Length = 299 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 12/125 (9%)
Query: 341 SYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400
+ A+G ++R +D + E+ R+W+ G +IR+ LD A+ +PDLA
Sbjct: 184 AIAEGFEILRNSQ----FDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF---- 235
Query: 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSL-AYFDTYRRERLPANLVQAQRDYFGA 459
+ R V AI+ G+ P +++SL + F + + ++ A R FG
Sbjct: 236 ---SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGG 292
Query: 460 HTYER 464
H ++
Sbjct: 293 HAEKK 297
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 341 SYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400
+YA+G L+ A +DL L + +W+ G +IR+ LD A +P L +
Sbjct: 186 AYAEGFELLEAS----RFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEI---- 237
Query: 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSL-AYFDTYRRERLPAN-LVQAQRDYFG 458
+E R V AI+ + P ++++L F + R+E A+ +V A R+ FG
Sbjct: 238 ---SGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRS-RQEDSFADKVVAALRNGFG 293
Query: 459 AHTYERVD 466
H ++ +
Sbjct: 294 GHAVKKKE 301
|
Length = 301 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 484 | |||
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 100.0 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.97 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.96 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.94 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.93 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.93 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.92 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.91 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 99.91 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.89 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.88 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.88 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 99.87 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.86 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.85 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.84 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.84 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.81 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.81 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.79 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.79 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.78 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.78 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.75 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.74 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.74 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.72 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.71 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.7 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.7 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.7 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.69 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.68 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.68 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.68 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.68 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.67 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.67 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 99.66 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.64 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.63 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.62 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.62 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.61 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.61 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.61 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.6 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.6 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.58 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.57 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.55 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.53 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.52 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.49 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.49 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.48 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.47 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 99.45 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.43 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.43 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.41 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.4 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.38 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.37 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.36 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.36 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.35 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.35 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 99.34 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.34 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.33 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 99.33 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.32 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.32 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 99.32 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 99.32 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.32 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.29 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.28 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 99.28 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 99.26 | |
| KOG2666 | 481 | consensus UDP-glucose/GDP-mannose dehydrogenase [C | 99.11 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.1 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.09 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 99.08 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.06 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.06 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.04 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.03 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.02 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.02 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.02 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 99.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.99 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.98 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.98 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.97 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.9 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.9 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.82 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.8 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.79 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.79 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.77 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.75 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.74 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.72 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.72 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.71 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 98.71 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.67 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 98.65 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 98.65 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.65 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.64 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 98.64 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.64 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.56 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 98.55 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 98.54 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.52 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 98.46 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.41 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.41 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.41 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 98.32 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.32 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.3 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.29 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.29 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.28 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 98.25 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 98.18 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.15 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 98.15 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 98.14 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.09 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 98.07 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.06 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 98.06 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 98.05 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 98.03 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 98.01 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 98.01 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 98.0 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.99 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.99 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.94 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.92 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.92 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.89 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.89 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 97.89 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 97.89 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 97.88 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.86 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.85 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.85 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.82 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.81 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.81 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.81 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.81 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.8 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.77 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 97.75 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.74 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.74 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.72 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.72 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.72 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.71 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.7 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.7 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 97.68 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.68 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.68 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.67 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 97.66 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.64 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.64 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.64 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.63 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.62 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.61 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.57 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 97.57 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 97.56 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 97.56 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 97.55 | |
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 97.54 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.54 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.52 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 97.5 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.5 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 97.49 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.48 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 97.46 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 97.44 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.42 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.42 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 97.41 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.41 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.35 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.35 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.33 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 97.29 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.28 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 97.27 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 97.27 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.27 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.26 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.21 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 97.2 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.2 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 97.18 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.18 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.16 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.13 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.12 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.11 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 97.11 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.1 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.08 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.04 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.01 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.01 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 97.01 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 96.99 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 96.97 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.95 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.94 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.9 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.9 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.88 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 96.85 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 96.84 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.84 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.81 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 96.81 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.8 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 96.75 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.75 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 96.74 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.73 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 96.68 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.67 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.63 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.63 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.62 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.6 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 96.6 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.59 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.58 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.58 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 96.55 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.54 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.53 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.53 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 96.52 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.49 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.46 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.46 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 96.46 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 96.41 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.4 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.37 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.36 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 96.36 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.36 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 96.36 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.36 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 96.35 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.35 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.34 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 96.32 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.31 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 96.3 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.29 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 96.29 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 96.28 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 96.25 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 96.25 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.24 | |
| PLN00106 | 323 | malate dehydrogenase | 96.24 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.23 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 96.23 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.22 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.21 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.21 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 96.2 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.18 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.14 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.13 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.12 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.12 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.11 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.09 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.09 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.08 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.06 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.06 | |
| COG0460 | 333 | ThrA Homoserine dehydrogenase [Amino acid transpor | 96.06 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.05 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.04 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.02 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.01 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 96.01 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 96.0 | |
| PRK08223 | 287 | hypothetical protein; Validated | 95.99 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.99 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.99 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 95.97 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.97 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.95 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.94 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.94 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.89 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 95.85 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.85 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.83 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.78 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.78 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 95.78 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.78 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.77 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.77 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 95.73 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 95.73 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.68 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 95.67 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.62 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.62 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.59 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.59 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 95.58 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.57 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 95.57 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 95.56 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 95.54 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 95.54 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.51 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.49 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 95.48 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.44 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 95.43 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 95.37 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.35 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 95.35 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.35 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.33 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 95.33 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.31 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 95.29 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.27 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.24 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 95.24 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 95.23 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 95.23 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.2 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 95.2 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.17 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 95.17 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 95.16 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.14 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 95.11 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 95.11 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.1 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.1 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.09 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 94.96 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 94.94 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.93 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.92 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.92 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 94.9 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 94.89 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 94.88 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 94.87 | |
| COG1486 | 442 | CelF Alpha-galactosidases/6-phospho-beta-glucosida | 94.85 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.85 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.84 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 94.83 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 94.82 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 94.78 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 94.77 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 94.75 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.75 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 94.74 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 94.7 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 94.69 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 94.68 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 94.64 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 94.64 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.64 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 94.63 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 94.61 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 94.6 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.6 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.6 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 94.57 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 94.57 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 94.48 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 94.48 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 94.47 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 94.45 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.42 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 94.41 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 94.38 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 94.37 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 94.35 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 94.31 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 94.31 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 94.3 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 94.29 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.28 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 94.28 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 94.27 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.22 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.18 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 94.11 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 94.11 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.09 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 94.09 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 94.07 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 94.07 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 94.05 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.02 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 94.0 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 94.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 93.99 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 93.99 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.97 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 93.97 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 93.93 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 93.92 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 93.92 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 93.91 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 93.88 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 93.86 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 93.85 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 93.84 | |
| PRK05868 | 372 | hypothetical protein; Validated | 93.83 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 93.82 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 93.82 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 93.81 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 93.8 | |
| PRK07411 | 390 | hypothetical protein; Validated | 93.79 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 93.75 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 93.75 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 93.74 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 93.74 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 93.74 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 93.72 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 93.7 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 93.66 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 93.66 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 93.65 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 93.64 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.64 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 93.63 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 93.63 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 93.6 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.59 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 93.56 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 93.55 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 93.54 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 93.53 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.52 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 93.51 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 93.5 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 93.45 | |
| PRK08643 | 256 | acetoin reductase; Validated | 93.43 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 93.41 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 93.39 |
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-130 Score=949.61 Aligned_cols=471 Identities=58% Similarity=0.950 Sum_probs=454.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+.+.||+||+|+||++||+|++++||+|.+|||+++++++|.+.....+ ++.++.|++|+++.|++|+.|+++|.++
T Consensus 1 ~~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k--~i~~~~sieefV~~Le~PRkI~lMVkAG 78 (473)
T COG0362 1 MMKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGK--NIVPAYSIEEFVASLEKPRKILLMVKAG 78 (473)
T ss_pred CCccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCC--CccccCcHHHHHHHhcCCceEEEEEecC
Confidence 66778999999999999999999999999999999999999998765321 6889999999999999999999999999
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
..+++++++|+|+|.+|+||||.+|+.+.+|.|+.+.+.++|++|++++||||+++|+.||++|+||++++|+.++|+|+
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~ 158 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILT 158 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
+++++. +++|||.|+|+.|+|||||||||+|+|+.||+++|+|.+++...|++.+++.++|++||+|.++|||++|+.+
T Consensus 159 ~IaAk~-~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~ 237 (473)
T COG0362 159 KIAAKV-DGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITAD 237 (473)
T ss_pred HHHhhc-CCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 999997 6999999999999999999999999999999999999999997779999999999999999999999999999
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccc
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQT 320 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~ 320 (484)
+|+.+|..++.+++|.|+|.++|||||+|+++.|.++|+|+|+|.+||++|++|++|++|..+++.|++|.. ..+
T Consensus 238 IL~~kD~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~Ask~l~~~~~-----~~~ 312 (473)
T COG0362 238 ILRKKDEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITEAVFARYLSSLKDERVAASKVLAGPKL-----GEP 312 (473)
T ss_pred HHhhcCcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHHHHhhcCCCCC-----CCC
Confidence 999887666669999999999999999999999999999999999999999999999999999999998865 236
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
+++..|+++|++|+|+++|++|+|||.+|++||++|+|++++.+|+++||+||||||.||+.|.++|.++|++.||+++|
T Consensus 313 ~dk~~fi~~vr~ALy~sKI~sYAQGF~~l~~AS~e~gW~l~~~~iA~iWR~GCIIRs~FL~~I~~af~~~p~l~nLl~~p 392 (473)
T COG0362 313 GDKEEFIEDVRQALYASKIVSYAQGFALLRAASKEYGWDLNLGEIALIWRGGCIIRSKFLDKITDAFDENPELANLLLAP 392 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhccceehHHHHHHHHHHHhcCcchhhhhcCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccccCC
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIA 479 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~ 479 (484)
+|.+.+++..++||++|..|++.|+|+|++++||+|||+||++++|+|||||||||||+|||+|+|++|.||++|++.+
T Consensus 393 yF~~~~~~~~~~~R~vV~~a~~~giP~P~~ssalsy~Dsyr~~~lpaNLiQAQRDyFGAHtyeR~D~~~~fHt~W~~~~ 471 (473)
T COG0362 393 YFKSILEEYQQSLRRVVAYAVEAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTNWTGGG 471 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhhhccccHHHHHHHHHhhcccceeecCCCCccccCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998754
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-122 Score=882.21 Aligned_cols=475 Identities=61% Similarity=0.997 Sum_probs=454.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++||+|||++||.+|++|++++||.|++|||+.++++++.+...+ +.++.+..|+++++..+++|++|++.|+++.++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak--~~~i~ga~S~ed~v~klk~PR~iillvkAG~pV 84 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAK--GTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPV 84 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhc--CCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcH
Confidence 689999999999999999999999999999999999999876554 346788899999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+..+++|.|+|.+|++|||.+|+.+++|.++.+.+.++|+-|++++||||+++|+.||++|+||++++|..++++|+.++
T Consensus 85 D~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 85 DQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKIA 164 (487)
T ss_pred HHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
+++.+++|||.|+|+.|+|||||||||+|+|+.||+++|+|.++++.+|++.+++.++|+.||.+.+.||+++|+.+||+
T Consensus 165 akv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT~dIlk 244 (487)
T KOG2653|consen 165 AKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEITADILK 244 (487)
T ss_pred HHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHhHHHhh
Confidence 99888999999999999999999999999999999999999999997779999999999999999999999999999998
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
-+|+ .+.+++++|+|.++|||||+||++.|.++|+|+|+|.+||++|++|++|++|..+++.|.+|..++ ....+.
T Consensus 245 ~~d~-~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ask~L~gp~~~~---~~~~~k 320 (487)
T KOG2653|consen 245 FKDE-DGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGEAVFARCLSALKDERVRASKVLKGPGVKR---DMGDDK 320 (487)
T ss_pred eecc-CCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCch---hhhhHH
Confidence 8764 344899999999999999999999999999999999999999999999999999999999987532 233358
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
..|++++++|+|+++|++|+|||+||++++++++|++|+..|+++||+||||||.||+.|.++|+++|+|+|+|+|+.|.
T Consensus 321 ~~~~dd~r~alYaskiiSyaQGfmLlr~aa~e~gW~ln~~~iAlmWrgGCIIRsvfL~~I~~a~~~~p~l~nll~d~fF~ 400 (487)
T KOG2653|consen 321 KQFLDDIRQALYASKIISYAQGFMLLREAAKEKGWKLNNGGIALMWRGGCIIRSVFLDRIKKAYQRNPDLANLLLDPFFA 400 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHcCCeEeeHHHHHHHHHHHhcCccHhhhccCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCC-ccccccccCCccC
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSG-SFHTEWFKIAKQS 482 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~~~ 482 (484)
+++.+.+.+||++|..|++.|||+|++|+||+|||+||++++|+||+||||||||+|||++++++| .+|++|++.+.++
T Consensus 401 ~~v~~~q~~wr~vV~~a~~~gIptP~~st~Lafydgyr~e~lpaNllQAqRDYFGAHtye~l~~~~~~~HtnWtg~gg~~ 480 (487)
T KOG2653|consen 401 KAVEEAQDSWRRVVALAVEAGIPTPAFSTALAFYDGYRSERLPANLLQAQRDYFGAHTYELLGEPGKAIHTNWTGHGGNV 480 (487)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHhhhhhhcCcHHHHHHHHHhhccceeeecCCCcceeeeeecccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 7999999977777
Q ss_pred CC
Q 011501 483 KI 484 (484)
Q Consensus 483 ~~ 484 (484)
+|
T Consensus 481 s~ 482 (487)
T KOG2653|consen 481 SS 482 (487)
T ss_pred cc
Confidence 64
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-114 Score=896.69 Aligned_cols=468 Identities=60% Similarity=1.016 Sum_probs=439.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||++|+++||+|++|||++++++++.+...+. +..+..+.+++++++.++++|+||+|||+++++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~-g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEG-NTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhc-CCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 5899999999999999999999999999999999999988753321 112557889999998877799999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+++.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++
T Consensus 81 ~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~~ia 160 (470)
T PTZ00142 81 DETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILEKCS 160 (470)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhhhhhcccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFSEWNKGELLSFLIEITADIF 242 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l 242 (484)
++. +++||++|+|+.|+||++||+||++++++|++++|++.|++ +.| ++++++.++|+.|+.|.+.||+++++..++
T Consensus 161 ~~~-~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~g-l~~~~l~~v~~~w~~g~~~S~l~ei~~~~~ 238 (470)
T PTZ00142 161 AKV-GDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILG-MSNEELSEVFNKWNEGILNSYLIEITAKIL 238 (470)
T ss_pred hhc-CCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC-CCHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 874 78899999999999999999999999999999999999998 577 999999999999999999999999999999
Q ss_pred ccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccc
Q 011501 243 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVD 322 (484)
Q Consensus 243 ~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
.++|+.++.+.+|.|.|.++|||||+||+++|.++|||+|+|++||++|++|.+|++|..+++.|.+|....+ ....+
T Consensus 239 ~~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~~~~~~~gp~~~~~--~~~~~ 316 (470)
T PTZ00142 239 AKKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASVDARNISALKEERTKASSHLAGPNPANK--TETED 316 (470)
T ss_pred hcccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHHhccccCCCccccc--ccccc
Confidence 9876533358999999999999999999999999999999999999999999999999999999987742000 11236
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhH
Q 011501 323 KKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEF 402 (484)
Q Consensus 323 ~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~ 402 (484)
++||+|||||||||++|++|+|||+||++|+++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.||++++.|
T Consensus 317 ~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~ 396 (470)
T PTZ00142 317 KKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPDF 396 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccc
Q 011501 403 AKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476 (484)
Q Consensus 403 ~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 476 (484)
...+++..++|||+|..|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 397 ~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~ 470 (470)
T PTZ00142 397 NDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYRSQNLPANLVQAQRDYFGAHTYKRLDRPGAFHTNWE 470 (470)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHHHhCCCCcccCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999995
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-112 Score=886.21 Aligned_cols=479 Identities=86% Similarity=1.338 Sum_probs=444.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||.+||+||+++||+|++|||++++++++.+.....|...+..+.+++|+++.+++||+||+|||++++
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 46899999999999999999999999999999999999988642211100234688999999988889999999999999
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
+++|++++++.+.+|++|||+||+.|.+++++.+.+.++|++|+++||+||+++|+.|+++|+||+++++++++|+|+.+
T Consensus 86 V~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~i 165 (493)
T PLN02350 86 VDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKV 165 (493)
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhhhhhccc
Q 011501 163 AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLSNEELQQVFSEWNKGELLSFLIEITADI 241 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 241 (484)
+++. +++||++|+|+.|+||++||+||+++++++++++|++.++++. | +|++++.++|+.|+.+.+.||+++++.++
T Consensus 166 a~k~-~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~G-ld~~~l~~vf~~~~~g~~~S~llei~~~~ 243 (493)
T PLN02350 166 AAQV-DDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGG-LSNEELAEVFAEWNKGELESFLIEITADI 243 (493)
T ss_pred hhhc-CCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHcCCCccchHHHHHHHH
Confidence 9875 7889999999999999999999999999999999999999995 7 99999999999999999999999999999
Q ss_pred cccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcc-cccc
Q 011501 242 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVL-AEQT 320 (484)
Q Consensus 242 l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~-~~~~ 320 (484)
+..+++++++|.++.+.||++|||||+|++++|.++|+|+|++.++|++|+.|++|++|..+++.|++|..+... ....
T Consensus 244 l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~~~~~~~~~~~~~~~~~~~~ 323 (493)
T PLN02350 244 FSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKEERVAAAKVFKEAGLEDILSADSG 323 (493)
T ss_pred HhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHHHHhhcCCCCcccccccccc
Confidence 887666887899999999999999999999999999999999999999999999999999999999876311000 0012
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+...|++.|++|+|+++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++
T Consensus 324 ~~~~~~~~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~ 403 (493)
T PLN02350 324 VDKKQLIDDVRQALYASKICSYAQGMNLIRAKSVEKGWNLNLGELARIWKGGCIIRAVFLDRIKKAYDRNPDLASLLVDP 403 (493)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccccCCc
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFKIAK 480 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~~~~ 480 (484)
.|.+.+.+..++|||+|..|++.|+|+|+|++||+||++++++++|+|+|||||||||+|+|+|+|++|.||++|++.+.
T Consensus 404 ~~~~~~~~~~~~~r~~V~~a~~~gip~P~ls~aL~y~~s~~~~~~~~nliqaqRd~FGaH~~~r~d~~g~~h~~w~~~~~ 483 (493)
T PLN02350 404 EFAKEMVERQAAWRRVVSLAINAGISTPGMSASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDRPGSFHTEWTKLAR 483 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCCccHHHHHHHHHHhCCCceeeCCCCCCCcCCchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred cCC
Q 011501 481 QSK 483 (484)
Q Consensus 481 ~~~ 483 (484)
.++
T Consensus 484 ~~~ 486 (493)
T PLN02350 484 KSK 486 (493)
T ss_pred ccc
Confidence 543
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-112 Score=881.00 Aligned_cols=455 Identities=59% Similarity=0.967 Sum_probs=431.9
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-hhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhh
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSV 92 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~ 92 (484)
||.+||+||+++||+|.+|||++++++++.+. +... +++.+.|+++++++++++|+||+|||++.++++|++++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~---g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGK---KIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCC---CeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHh
Confidence 89999999999999999999999999999874 2111 3678999999999888899999999999999999999999
Q ss_pred hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCc
Q 011501 93 YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPC 172 (484)
Q Consensus 93 ~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~ 172 (484)
.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++.++.+++||
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986689999
Q ss_pred eEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCc
Q 011501 173 VTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDG 251 (484)
Q Consensus 173 ~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~ 251 (484)
++|+|+.|+||++|||||+|++++|++++|++.++++ .| ++++++.++|+.||.|.+.||+++++.+++..+|..++.
T Consensus 158 ~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~G-l~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~ 236 (459)
T PRK09287 158 VTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLG-LSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGK 236 (459)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCC
Confidence 9999999999999999999999999999999999995 77 999999999999999999999999999999876532556
Q ss_pred hhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccchhhHHHHHH
Q 011501 252 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVR 331 (484)
Q Consensus 252 ~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 331 (484)
+++|.|+|.++|||||+||+++|.++|||+|+|+++|++|+.|.++++|..++++|.+|.. ....+.+||+||||
T Consensus 237 ~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~~~~~~~g~~~-----~~~~~~~~~i~~v~ 311 (459)
T PRK09287 237 PLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVAASKVLSGPAA-----KFEGDKAEFIEDVR 311 (459)
T ss_pred cchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHHhhcccCCCCC-----cccccHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987643 11235689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhh
Q 011501 332 QALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQS 411 (484)
Q Consensus 332 nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~ 411 (484)
|||||++|++|+|||+||+++|++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++||++++.|...+++..+
T Consensus 312 ~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~~~i~~~~~ 391 (459)
T PRK09287 312 QALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFKDILEEYQD 391 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCcccccccc
Q 011501 412 AWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477 (484)
Q Consensus 412 ~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 477 (484)
+|||+|..|++.|+|+|+|++||+||++++++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 392 ~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~~~~~anliqaqRd~FGaH~~~r~d~~g~~h~~w~~ 457 (459)
T PRK09287 392 ALRRVVALAVQAGIPVPAFSSALSYYDSYRTARLPANLIQAQRDYFGAHTYERTDKEGFFHTEWSE 457 (459)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCccHHHHHHHHhHhCCCCcccCCCCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-111 Score=875.92 Aligned_cols=464 Identities=58% Similarity=0.960 Sum_probs=436.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .++..+.+++++++.++++|+||+|||++.+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g--~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~ 78 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKG--KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVD 78 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCC--CCceecCCHHHHHhhcCCCCEEEEECCCcHHHH
Confidence 499999999999999999999999999999999999988752110 025677899999988888999999999999999
Q ss_pred HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHhc
Q 011501 85 QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAA 164 (484)
Q Consensus 85 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~ 164 (484)
++++++.+++++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+|+.|+++|+||+++++++++|+|+.++.
T Consensus 79 ~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia~ 158 (467)
T TIGR00873 79 AVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIAA 158 (467)
T ss_pred HHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 165 QVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 165 ~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
++ +++||++|+|+.|+||++||+||++++++|++++|++.|++ +.| ++++++.++|+.|+.+.++||+++++.+++.
T Consensus 159 ~~-~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g-~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~ 236 (467)
T TIGR00873 159 KV-DGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLG-LSNEEIAEVFTEWNNGELDSYLIEITADILK 236 (467)
T ss_pred hc-CCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCcccchHHHhHHHHHh
Confidence 85 77899999999999999999999999999999999999996 577 9999999999999999999999999999999
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
.+|+ .+.+++|.|.|.++|||||+||+++|.++|||+|+|+++++.|+.|..|++|..+++.|.+|... ....+.
T Consensus 237 ~~d~-~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~~~~~~~gp~~~----~~~~~~ 311 (467)
T TIGR00873 237 KKDE-DGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESVFARYLSSLKEERVAASKVLSGPLAP----EPAVDK 311 (467)
T ss_pred ccCC-CCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHHhhcccCCCCcc----cccccH
Confidence 8765 34589999999999999999999999999999999999999999999999999999999776421 122356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
+||+|||||||||++|++|+|||+||++||++|+|++|+++|++|||+||||||+||+.|.++|++++++.||++++.|.
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~ 391 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK 391 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCC--cccccccc
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSG--SFHTEWFK 477 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~--~~h~~w~~ 477 (484)
..+++..++|||+|..|++.|+|+|++|+||+||++++++++|+|||||||||||+|||+|+|++| .||++|++
T Consensus 392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~~~~~nliqaqRd~FGaH~~~r~d~~g~~~~h~~w~~ 467 (467)
T TIGR00873 392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTARLPANLLQAQRDYFGAHTYERTDKPRGEFFHTNWTG 467 (467)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcCcccHHHHHHHHHHhccccccccCCCCCCccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 99999963
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-85 Score=626.98 Aligned_cols=291 Identities=63% Similarity=1.027 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhc
Q 011501 182 GNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKT 261 (484)
Q Consensus 182 g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~ 261 (484)
|||||||||+|+|++||+++|++.++++..|++++++.++|+.||.|.++|||++++.++++++| .++.+++|.|+|.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d-~~g~~lld~I~d~a 79 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKD-ETGGPLLDKILDKA 79 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B--TTSSBGGGGB-S--
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhcc-CccCcchhhhCCcc
Confidence 89999999999999999999999999976569999999999999999999999999999999876 56779999999999
Q ss_pred CCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccchhhHHHHHHHHHHHHHHHH
Q 011501 262 GMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICS 341 (484)
Q Consensus 262 ~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~nai~~~~~~~ 341 (484)
+|||||+|++++|.++|||+|+|++||++|++|+.+++|.++++.+++|.... ....+...|+++|++|++++++++
T Consensus 80 ~~kGtG~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~~s~~~~~~~~~~---~~~~~~~~~i~~l~~Aly~~~i~~ 156 (291)
T PF00393_consen 80 GQKGTGKWTVQEALELGVPAPTIAAAVFARFLSAQKEERVAASKILPGPQKFD---ESKEDKEEFIEDLRKALYAAKIIS 156 (291)
T ss_dssp --BSHHHHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHHHHHHSTT-S-ST---TS-SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccchHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHHHHhhcccccccc---cccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998874210 334578899999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhhhHHHHHHHHH
Q 011501 342 YAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAI 421 (484)
Q Consensus 342 ~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~ 421 (484)
|+|||+||+++|++|+|++|+++|++|||+||||||.||+.|.++|+++|++.||++++.|.+.+++..++|||+|..|+
T Consensus 157 yaQGf~ll~~as~~~~W~lnl~~ia~IWr~GCIIRs~lL~~i~~af~~~p~l~nLll~~~f~~~l~~~~~~lR~vV~~ai 236 (291)
T PF00393_consen 157 YAQGFALLRAASKEYGWDLNLSEIARIWRGGCIIRSWLLDDIAEAFKENPDLENLLLDPYFAEELKDNQPSLRRVVSLAI 236 (291)
T ss_dssp HHHHHHHHHHHHHHHT----HHHHHHHTSSSSTT-BTHHHHHHHHHHH-TT-STGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCcHHHHHHHHhccchHHHHHHHHHHHHHHhCCChhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCccccccc
Q 011501 422 NSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476 (484)
Q Consensus 422 ~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~ 476 (484)
+.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|++|.||++|+
T Consensus 237 ~~gipvPalsaaL~Y~ds~~~~~lpanlIQAqRDyFGaHtyeR~D~~g~fH~~W~ 291 (291)
T PF00393_consen 237 EAGIPVPALSAALSYFDSYRSERLPANLIQAQRDYFGAHTYERIDKEGSFHTEWS 291 (291)
T ss_dssp HHT---HHHHHHHHHHHHHTTSSHTHHHHHHHHHHHH---EEBSSSSSEE---TT
T ss_pred HcCCChHHHHHHHHHHHhcccCCCcHHHHHHHHHHhcCcceeecCCCCCcCCCCC
Confidence 9999999999999999999999999999999999999999999999999999995
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-60 Score=436.47 Aligned_cols=298 Identities=28% Similarity=0.513 Sum_probs=269.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+||+||||.||.+|.++|.+.||+|.+||+|++.++++...+ ++..+|++++++.|..+++|.++||.++.+
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~g-------a~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEG-------ATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcC-------CccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 5899999999999999999999999999999999999988765 467889999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+.+++++.+.|++|++|||.+|+.+.++.++.+.++++|++|+|++.|||..+++.|.++|+|||+++++++.|+|+.++
T Consensus 74 ~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA 153 (300)
T COG1023 74 DAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALA 153 (300)
T ss_pred HHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
. | ..|
T Consensus 154 ~---------------g----------------------------e~G-------------------------------- 158 (300)
T COG1023 154 P---------------G----------------------------EDG-------------------------------- 158 (300)
T ss_pred c---------------C----------------------------cCc--------------------------------
Confidence 2 1 000
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
|. +-+| .++
T Consensus 159 ----yl---------------------------------------------------------~~Gp----------~Gs 167 (300)
T COG1023 159 ----YL---------------------------------------------------------YCGP----------SGS 167 (300)
T ss_pred ----cc---------------------------------------------------------cccC----------CCc
Confidence 00 0012 368
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
|||+|||||+|||++||+|+|||+||+.+ +|++|+++|+++||+|++||||||+.+.++|+++++|+.+- ..+.
T Consensus 168 GHfvKMVHNGIEYGmM~a~aEGfelL~~s----~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q~~--g~v~ 241 (300)
T COG1023 168 GHFVKMVHNGIEYGMMQAIAEGFELLKNS----PFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQIS--GRVS 241 (300)
T ss_pred chhHHHHhccHHHHHHHHHHHHHHHHHhC----CCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHHhc--Ceec
Confidence 99999999999999999999999999975 78999999999999999999999999999999988865432 2232
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCcchhHHHHHhhccCCccceec
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLA-YFDTYRRERLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~-~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
+ .+++ ||+|++|+++|+|+|+|+.||+ .|.|.....+..+++.|+|..||+|..+++
T Consensus 242 d---SGEG--rWTv~~aldlgvpaPVia~al~~Rf~S~~~d~f~~kvlaalR~~FGgH~vk~k 299 (300)
T COG1023 242 D---SGEG--RWTVEEALDLGVPAPVIALALMMRFRSRQDDTFAGKVLAALRNEFGGHAVKKK 299 (300)
T ss_pred c---CCCc--eeehHHHHhcCCCchHHHHHHHHHHhccchhhHHHHHHHHHHHHhCCcccccC
Confidence 2 5677 9999999999999999999996 888999888999999999999999998775
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-54 Score=428.64 Aligned_cols=296 Identities=29% Similarity=0.512 Sum_probs=259.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||.+|+++|++|.+|||++++++.+.+.+ .....+++++++.+..+|+||+|||++ .+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~ 72 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-------TTGVANLRELSQRLSAPRVVWVMVPHG-IV 72 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-------CcccCCHHHHHhhcCCCCEEEEEcCch-HH
Confidence 4899999999999999999999999999999999998887643 344578888887666799999999998 99
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++|+|+.++
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~ 152 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVA 152 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
.+. +.++|+|+
T Consensus 153 ~~~----~~~~~~G~----------------------------------------------------------------- 163 (298)
T TIGR00872 153 PEE----QGYLYCGP----------------------------------------------------------------- 163 (298)
T ss_pred CcC----CCEEEECC-----------------------------------------------------------------
Confidence 320 00111111
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
.++
T Consensus 164 -----------------------------------------------------------------------------~G~ 166 (298)
T TIGR00872 164 -----------------------------------------------------------------------------CGS 166 (298)
T ss_pred -----------------------------------------------------------------------------ccH
Confidence 134
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
+|++|++||++++++|++|+|||.+++++ +|++|+++++++|++||+++|++|+.+.++|++++.+++ |.
T Consensus 167 ~~~~K~~~n~l~~~~~~~~aE~~~l~~~~----g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~------~~ 236 (298)
T TIGR00872 167 GHFVKMVHNGIEYGMMAAIAEGFEILRNS----QFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAE------FS 236 (298)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHH------HH
Confidence 56789999999999999999999999975 999999999999999999999999999999998875433 44
Q ss_pred HHH-HhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCC-CcchhHHHHHhhccCCccceec
Q 011501 404 KEI-IERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRE-RLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~-~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~-~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
..+ +++++ ||+|..|++.|+|+|++++||.|++.++++ ++|+|+|||||||||+|+|+++
T Consensus 237 ~~~~~~~~~--r~~v~~a~~~g~p~P~~~~al~~~~~~~~~~~~~~~~~~~~r~~fg~h~~~~~ 298 (298)
T TIGR00872 237 GRVSDSGEG--RWTVIAAIDLGVPAPVIATSLQSRFASRDLDDFANKVLAALRKEFGGHAEKKK 298 (298)
T ss_pred HHHHhhccH--HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhhCCCCcCCC
Confidence 443 44455 999999999999999999999988888888 9999999999999999999873
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-47 Score=377.13 Aligned_cols=299 Identities=31% Similarity=0.540 Sum_probs=246.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||++|+++|++|.+|||++++++.+.+.+ +..+.+++++++.+..+|+||+++|++.++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~ 73 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEG-------ATGADSLEELVAKLPAPRVVWLMVPAGEIT 73 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCC-------CeecCCHHHHHhhcCCCCEEEEEecCCcHH
Confidence 4899999999999999999999999999999999998886532 567889999988644579999999998889
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+.+|++|||+||+.|..+.++.+.+.++|+.|+|+||+||+.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (301)
T PRK09599 74 DATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALA 153 (301)
T ss_pred HHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccc
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFG 243 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~ 243 (484)
.+. +..++|+|+.|+|+.+|+
T Consensus 154 ~~~---~~~~~~~G~~G~g~~~Kl-------------------------------------------------------- 174 (301)
T PRK09599 154 PRA---EDGYLHAGPVGAGHFVKM-------------------------------------------------------- 174 (301)
T ss_pred ccc---cCCeEeECCCcHHHHHHH--------------------------------------------------------
Confidence 621 012577776665544444
Q ss_pred cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccch
Q 011501 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDK 323 (484)
Q Consensus 244 ~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 323 (484)
T Consensus 175 -------------------------------------------------------------------------------- 174 (301)
T PRK09599 175 -------------------------------------------------------------------------------- 174 (301)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
++|+++++.|++|+|+|.++++ ++|++|+.+++++|+.||+++|++++...+++.+++.. +.+.
T Consensus 175 ------~~n~l~~~~~~~~aEa~~l~~~----~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~------~~~~ 238 (301)
T PRK09599 175 ------VHNGIEYGMMQAYAEGFELLEA----SRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKL------DEIS 238 (301)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH----cCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCH------HHHH
Confidence 4445555555566666666654 46777777778888888877888888887777655321 1122
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHH-HHhhcCCCcchhHHHHHhhccCCccceec
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLAY-FDTYRRERLPANLVQAQRDYFGAHTYERV 465 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~-~~~~~~~~~~~~~i~a~rd~fG~h~~~r~ 465 (484)
..++. ..++||++..|.+.|+|+|++++++.| +.++....+|.+++|+||||||+|+|+|+
T Consensus 239 ~~~kd-~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~~~~~ 300 (301)
T PRK09599 239 GYVED-SGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHAVKKK 300 (301)
T ss_pred HHHHh-hCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCccCC
Confidence 22222 334499999999999999999999987 99999999999999999999999999996
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-47 Score=367.95 Aligned_cols=256 Identities=26% Similarity=0.392 Sum_probs=237.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH-HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE-TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~-~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+||||||+|.||.+||.||.++||+|++|||++++..+ +.+.+ .....++.|+++. +|+||+|||++.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~G-------a~~a~s~~eaa~~---aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAG-------ATVAASPAEAAAE---ADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcC-------CcccCCHHHHHHh---CCEEEEecCCHHH
Confidence 48999999999999999999999999999999999444 44433 4678899999998 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
+++|+ +++.+.+++|.++||+||.+|..++++.+.++++|++|+|+|||||+.++..|. +||+||+++.|++++|+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pv 150 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPV 150 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHH
Confidence 99999 578889999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.+|.+ ++|+|+.|+|+.+|+++|.+..+++++++|++.++++.| +|++.+.+++ +.+..+||.++.+
T Consensus 151 l~~~g~~-------i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~G-ld~~~~~~vi---~~~~~~s~~~e~~ 219 (286)
T COG2084 151 LEAMGKN-------IVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAG-LDPDVVLEVI---SGGAAGSWILENY 219 (286)
T ss_pred HHHhcCc-------eEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hccccCChHHHhh
Confidence 9999976 599999999999999999999999999999999999999 9999999998 5778899999999
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.+.+..+ +|.|+|.++.+.||++ ++.++|++.|+|+|+.+.+
T Consensus 220 ~~~m~~~-~~~p~F~v~~~~KDl~------la~~~A~~~g~~lP~~~~~ 261 (286)
T COG2084 220 GPRMLEG-DFSPGFAVDLMLKDLG------LALDAAKELGAPLPLTALA 261 (286)
T ss_pred cchhhcC-CCCcchhHHHHHHHHH------HHHHHHHhcCCCCcHHHHH
Confidence 8777654 5999999999999997 8999999999999987654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=359.43 Aligned_cols=207 Identities=36% Similarity=0.603 Sum_probs=183.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||.+|+++|++|.+|||++++.+.+.+.+ ...+.+++++++..+.+|+||+|+|++.++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g-------~~~~~s~~~~~~~~~~advVi~~vp~~~~~ 73 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLG-------ITARHSLEELVSKLEAPRTIWVMVPAGEVT 73 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecCCHHHHHHhCCCCCEEEEEecCchHH
Confidence 4899999999999999999999999999999999988876532 467789999887644469999999999899
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++++++.+.+++|++|||+||+.|.++.++.+.+.++|+.|+|+||+|++.+++.|.++|+||+++++++++|+|+.++
T Consensus 74 ~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~ 153 (299)
T PRK12490 74 ESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALA 153 (299)
T ss_pred HHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHH
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLSNEELQQV 221 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~ 221 (484)
.+. ++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| |+|++++.++
T Consensus 154 ~~~----~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 154 PEG----PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARL 208 (299)
T ss_pred CcC----CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHH
Confidence 621 35799999999999999999999999999999988888764 2555555444
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=333.51 Aligned_cols=257 Identities=23% Similarity=0.352 Sum_probs=239.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||.+|+.||.++||+|++|||+.++.++|.+.+. +.+++|.|+++. +|+||.|||++.+
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga-------~v~~sPaeVae~---sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGA-------RVANSPAEVAED---SDVVITMVPNPKD 104 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhch-------hhhCCHHHHHhh---cCEEEEEcCChHh
Confidence 468999999999999999999999999999999999999998764 678999999998 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEE-EecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCI-IDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIED 157 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 157 (484)
+++++ .+++..+++|... ||+||+.|..++++.+.+..++..|+|+|||||..+|+.|. +||+|||++.++++.+
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~ 184 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASP 184 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHH
Confidence 99998 4566667788877 99999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhh
Q 011501 158 ILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEI 237 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~ 237 (484)
+|+.+|++ ++|+|..|.|..+|+++|.+....|..++|++.|+.+.| +|+..+.+++ +.|...|+.+..
T Consensus 185 ~~~~mGk~-------~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~G-Ld~~~l~eil---n~G~~~S~~~~~ 253 (327)
T KOG0409|consen 185 VFKLMGKN-------VVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLG-LDAKKLLEIL---NTGRCWSSMFYN 253 (327)
T ss_pred HHHHhcce-------EEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCcccHHHhC
Confidence 99999965 599999999999999999999999999999999999999 9999999998 568888999998
Q ss_pred hccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 238 TADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 238 ~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
..+.+.++ +|.|+|.++++.||++ ++..+|.+.++|+|+.+.|
T Consensus 254 ~~p~m~k~-dy~p~f~~~~m~KDLg------la~~~a~~~~~~~P~~slA 296 (327)
T KOG0409|consen 254 PVPGMLKG-DYNPGFALKLMVKDLG------LALNAAESVKVPMPLGSLA 296 (327)
T ss_pred cCchhhcC-CCCCcchHHHHHHHHH------HHHHhhhccCCCCchHHHH
Confidence 88877664 5999999999999997 8999999999999988766
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=330.56 Aligned_cols=262 Identities=23% Similarity=0.329 Sum_probs=233.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|||||+|.||.+||++|.++||+|.+|||++. .+.+.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g-------~~~~~s~~~~~~~---advVi~~v~~~~~v 69 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLG-------AVSVETARQVTEA---SDIIFIMVPDTPQV 69 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHH
Confidence 3799999999999999999999999999999975 45554332 4567889998887 99999999999888
Q ss_pred HHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++++. ++.+.+.+|++|||+||..|.+++++.+.+.++|+.|+++||+|++.+++.|. .+|+||+++++++++|+|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l 149 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLF 149 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHH
Confidence 98883 46777889999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++|+|+.|+|+.+|+++|.+....+++++|++.++++.| +|++++.+++ +.+.+.|++++.+.
T Consensus 150 ~~~g~~-------~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~ 218 (292)
T PRK15059 150 ELLGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAG-ADPVRVRQAL---MGGFASSRILEVHG 218 (292)
T ss_pred HHHcCC-------cEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCcccCHHHHhhc
Confidence 999976 499999999999999999999999999999999999999 9999999988 56778899999888
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+.+.. ++|.++|.++.+.||+. ++++.|++.|+|+|+... +.+.|..+
T Consensus 219 ~~~~~-~~~~~~f~l~~~~KDl~------l~~~~a~~~g~~~p~~~~-~~~~~~~a 266 (292)
T PRK15059 219 ERMIK-RTFNPGFKIALHQKDLN------LALQSAKALALNLPNTAT-CQELFNTC 266 (292)
T ss_pred hhhhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHH
Confidence 76654 45889999999999996 999999999999998764 45555443
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=324.16 Aligned_cols=264 Identities=20% Similarity=0.262 Sum_probs=231.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+++|++|++|||++++.+++.+.+ ...+.++.++++. +|+||+|+|++.++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g-------~~~~~s~~~~~~~---aDvVi~~vp~~~~~ 71 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKG-------ATPAASPAQAAAG---AEFVITMLPNGDLV 71 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEecCCHHHH
Confidence 5899999999999999999999999999999999998887643 3567788888887 99999999998778
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+.++ +++.+.+++|.++||+||..|.+++++.+.+.++|+.|+|+||+|++..+..|. .+|+||+++++++++|+|
T Consensus 72 ~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l 151 (296)
T PRK15461 72 RSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPIL 151 (296)
T ss_pred HHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHH
Confidence 8887 356777889999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++|+|+.|+|+.+|+++|.+...++++++|++.++++.| +|++.+.+++. .+...++.+....
T Consensus 152 ~~~g~~-------~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-ld~~~~~~~l~---~~~~~~~~~~~~~ 220 (296)
T PRK15461 152 MAMGNE-------LINAGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALG-LSFDVALKVMS---GTAAGKGHFTTTW 220 (296)
T ss_pred HHHcCC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHh---cCcccChHHHccc
Confidence 999976 499999999999999999999999999999999999999 99999999984 4444455554443
Q ss_pred -cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcC
Q 011501 240 -DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGL 296 (484)
Q Consensus 240 -~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~ 296 (484)
+.+.. ++|+++|.++.+.||++ ++.+.|++.|+|+|+...+ .++|..+.
T Consensus 221 ~~~~~~-~~~~~~f~~~~~~KD~~------l~~~~a~~~g~~~p~~~~~-~~~~~~a~ 270 (296)
T PRK15461 221 PNKVLK-GDLSPAFMIDLAHKDLG------IALDVANQLHVPMPLGAAS-REVYSQAR 270 (296)
T ss_pred cchhcc-CCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHHH
Confidence 34443 45889999999999996 9999999999999987654 56665543
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=315.07 Aligned_cols=260 Identities=21% Similarity=0.284 Sum_probs=230.7
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHH
Q 011501 8 LAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTI 87 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl 87 (484)
|||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.++++. +|+||+|||++.++++++
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~---advVil~vp~~~~~~~v~ 70 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAG-------AQAAASPAEAAEG---ADRVITMLPAGQHVISVY 70 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEeCCChHHHHHHH
Confidence 689999999999999999999999999999988887643 4567789998887 999999999987889998
Q ss_pred ---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 011501 88 ---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 88 ---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
+++.+.+.+|++|||+||..|..++++.+.+.++|+.|+++||+||+.++..|. .+|+||+++.+++++++|+.++
T Consensus 71 ~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g 150 (288)
T TIGR01692 71 SGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMG 150 (288)
T ss_pred cCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhc
Confidence 788888899999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccc--
Q 011501 164 AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADI-- 241 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-- 241 (484)
.+ ++|+|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||......+.
T Consensus 151 ~~-------~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~---~~~~~~s~~~~~~~~~~~ 219 (288)
T TIGR01692 151 RN-------IVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLG-LDPKVLFEIA---NTSSGRCWSSDTYNPVPG 219 (288)
T ss_pred CC-------eEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCcHHHHhCCCcc
Confidence 76 599999999999999999999999999999999999999 9999999998 4566778877655432
Q ss_pred -c---ccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 242 -F---GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 242 -l---~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+ ...++|+++|.++.+.||++ ++.+.|++.|+|+|+...+ .+.|..+
T Consensus 220 ~~~~~~~~~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 270 (288)
T TIGR01692 220 VMPQAPASNGYQGGFGTALMLKDLG------LAQDAAKSAGAPTPLGALA-RQLYSLF 270 (288)
T ss_pred ccccccccCCCCCCcchHHHHhhHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 1 11246888999999999996 8999999999999987644 5555544
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=359.79 Aligned_cols=263 Identities=17% Similarity=0.250 Sum_probs=240.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
..+|||||+|.||.+||.+|+++||+|.+|||++++.+++.+.+ ...++++.|++++ +|+||+|+|++.+
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~~~s~~e~a~~---advVi~~l~~~~~ 73 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELG-------GHRCDSPAEAAKD---AAALVVVLSHPDQ 73 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEEcCChHH
Confidence 46899999999999999999999999999999999999988754 4678899999988 9999999999999
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC--CeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG--LLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+++|+ +++++.+.+|++|||+||..|..++++.+.+.++| +.|+|+||+||+.+|+.|. ++|+||+++.+++++
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~ 153 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQ 153 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHH
Confidence 99998 57888889999999999999999999999999999 9999999999999999999 999999999999999
Q ss_pred HHHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhh
Q 011501 157 DILLKVAAQVPDSGPCVTY-VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLI 235 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~-~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~ 235 (484)
|+|+.+|.++ +| +|+.|+|+.+|+++|.+.++.+++++|++.++++.| ++++.+.+++ +.+.+.|+++
T Consensus 154 p~l~~~g~~i-------~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~G-ld~~~l~~vl---~~s~g~s~~~ 222 (1378)
T PLN02858 154 PFLSAMCQKL-------YTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAG-IHPWIIYDII---SNAAGSSWIF 222 (1378)
T ss_pred HHHHHhcCce-------EEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCCccCHHH
Confidence 9999999764 65 599999999999999999999999999999999999 9999999998 5678889999
Q ss_pred hhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 011501 236 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s 294 (484)
+.+.+.+.. ++|.++|.++.+.||++ +++++|+++|+|+|+...+ .++|..
T Consensus 223 ~~~~~~~~~-~d~~~~F~l~l~~KDl~------la~~~A~~~g~~lpl~~~a-~~~~~~ 273 (1378)
T PLN02858 223 KNHVPLLLK-DDYIEGRFLNVLVQNLG------IVLDMAKSLPFPLPLLAVA-HQQLIS 273 (1378)
T ss_pred HhhhhHhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 888776665 46889999999999997 9999999999999987654 555544
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=304.40 Aligned_cols=264 Identities=20% Similarity=0.285 Sum_probs=234.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|||||+|.||.++|.+|+++|++|.+|||++++.+.+.+.+ +..++++++++++ +|+||+|+|++.+
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~~~~e~~~~---~d~vi~~vp~~~~ 71 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAG-------AETASTAKAVAEQ---CDVIITMLPNSPH 71 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEeCCCHHH
Confidence 46899999999999999999999999999999999888776532 4567788888877 9999999999888
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
++.++ +++.+.+.+|++|||+||..|..++++.+.+.++|++|+++|++|++..+..|. .+++||+++++++++++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~ 151 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDL 151 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHH
Confidence 88887 567888899999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++++|+.|+|+.+|+++|.+.++++++++|++.++++.| ++++++.+++ ..+.+.|++++..
T Consensus 152 l~~~~~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-i~~~~~~~~l---~~~~~~s~~~~~~ 220 (296)
T PRK11559 152 MKAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAG-VNPDLVYQAI---RGGLAGSTVLDAK 220 (296)
T ss_pred HHHhcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhh
Confidence 9999976 489999999999999999999999999999999999998 9999998886 5677788888877
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.+..+ +|.++|.++...||++ ++++.|++.|+|+|+...+ .++|..+
T Consensus 221 ~~~~~~~-d~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 269 (296)
T PRK11559 221 APMVMDR-NFKPGFRIDLHIKDLA------NALDTSHGVGAPLPLTAAV-MEMMQAL 269 (296)
T ss_pred chHhhcC-CCCCCcchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6666443 5788899999999986 8999999999999987754 6666554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=300.51 Aligned_cols=262 Identities=21% Similarity=0.321 Sum_probs=233.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ ...+.++++++++ +|+||+|+|+..+++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDivi~~vp~~~~~~ 70 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAG-------AVTAETARQVTEQ---ADVIFTMVPDSPQVE 70 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CcccCCHHHHHhc---CCEEEEecCCHHHHH
Confidence 599999999999999999999999999999999988877643 3456788888887 999999999987888
Q ss_pred HHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHH
Q 011501 85 QTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 85 ~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~ 160 (484)
.++ .++.+.+.+|.+|||+||..|.+++++.+.++++|++|+++|++|++..+..|. .+++||+++++++++++|+
T Consensus 71 ~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~ 150 (291)
T TIGR01505 71 EVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFE 150 (291)
T ss_pred HHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHH
Confidence 887 457777889999999999999999999999999999999999999999999998 8999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ ..+.+.|++++.+.+
T Consensus 151 ~lg~~-------~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-id~~~~~~~l---~~~~~~s~~~~~~~~ 219 (291)
T TIGR01505 151 ALGKN-------IVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-VDPVRVRQAL---RGGLAGSTVLEVKGE 219 (291)
T ss_pred HhcCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---hcCcccCHHHHhhCh
Confidence 99976 499999999999999999999999999999999999998 9999999998 456668898888776
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.. ++|.++|.++.+.||+. ++.+.|++.|+++|+...+ .+++..+
T Consensus 220 ~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~~~~~~~-~~~~~~a 266 (291)
T TIGR01505 220 RVID-RTFKPGFRIDLHQKDLN------LALDSAKAVGANLPNTATV-QELFNTL 266 (291)
T ss_pred hhhc-CCCCCCcchHHHHHHHH------HHHHHHHHcCCCChhHHHH-HHHHHHH
Confidence 6554 45788999999999996 8999999999999987754 5555554
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.32 Aligned_cols=264 Identities=18% Similarity=0.231 Sum_probs=236.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ ...+.++.++++. +|+||+|||++.++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------a~~~~s~~e~~~~---aDvVi~~V~~~~~v 394 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAG-------GLAGNSPAEVAKD---VDVLVIMVANEVQA 394 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeecCCHHHHHhc---CCEEEEecCChHHH
Confidence 6899999999999999999999999999999999998887654 3457899999987 99999999999899
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIED 157 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 157 (484)
++++ .++.+.+.+|++|||+||+.|..++++.+.+.+ +|+.|+++||+||+.++..|. ++|+||+++++++++|
T Consensus 395 ~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~p 474 (1378)
T PLN02858 395 ENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGS 474 (1378)
T ss_pred HHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHH
Confidence 9998 457788889999999999999999999999998 899999999999999999999 9999999999999999
Q ss_pred HHHHHhccCCCCCCceEE-eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhh
Q 011501 158 ILLKVAAQVPDSGPCVTY-VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIE 236 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~-~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 236 (484)
+|+.++.++ +| .|+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++.+.+++ +.+.+.||.++
T Consensus 475 lL~~lg~~i-------~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~G-ld~~~l~evl---~~s~g~s~~~~ 543 (1378)
T PLN02858 475 VLSALSEKL-------YVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLG-LNTRKLFDII---SNAGGTSWMFE 543 (1378)
T ss_pred HHHHHhCcE-------EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccChhhh
Confidence 999999763 66 467999999999999999999999999999999999 9999999998 45667888888
Q ss_pred hhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcC
Q 011501 237 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGL 296 (484)
Q Consensus 237 ~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~ 296 (484)
...+.+.. ++|+++|.++.+.||++ ++.+.|+++|+|+|+... +.+.|..+.
T Consensus 544 ~~~~~~l~-~d~~~~f~l~l~~KDl~------l~~~~a~~~g~~~pl~~~-~~~~~~~a~ 595 (1378)
T PLN02858 544 NRVPHMLD-NDYTPYSALDIFVKDLG------IVSREGSSRKIPLHLSTV-AHQLFLAGS 595 (1378)
T ss_pred hccchhhc-CCCCCCchhHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHHHH
Confidence 77766654 45889999999999997 899999999999998764 466665544
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=243.79 Aligned_cols=154 Identities=27% Similarity=0.447 Sum_probs=138.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|++|||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ++.+.|++|++++ +|+||+|||++.+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~---~dvvi~~v~~~~~ 70 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQ---ADVVILCVPDDDA 70 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHH---BSEEEE-SSSHHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhc---ccceEeecccchh
Confidence 46999999999999999999999999999999999999988764 6789999999998 9999999999999
Q ss_pred HHHHHHH--HhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 83 VDQTIKT--LSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~~--l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+++++.+ +.+.+.+|++|||+||..|.+++++.+.+.++|++|+|+||+||+..++.|+ ++|+||+++++++++|+|
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l 150 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLL 150 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHH
Confidence 9999988 9999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccC
Q 011501 160 LKVAAQV 166 (484)
Q Consensus 160 ~~i~~~~ 166 (484)
+.++.++
T Consensus 151 ~~~~~~v 157 (163)
T PF03446_consen 151 EAMGKNV 157 (163)
T ss_dssp HHHEEEE
T ss_pred HHHhCCc
Confidence 9999863
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-28 Score=254.70 Aligned_cols=250 Identities=19% Similarity=0.192 Sum_probs=202.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh---------------hhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|+|+|||+|.||.++|.+|+++||+|++||+++++++.+.+.. ...+ +++.++++.++++.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g--~l~~~~~~~~~~~~-- 76 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAG--RLRATTDYEDAIRD-- 76 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcC--CeEEECCHHHHHhh--
Confidence 4899999999999999999999999999999999988776310 0011 25667788887776
Q ss_pred CCcEEEEecCCCch---------HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCe-EEeccCCCCHHh
Q 011501 69 KPRVIIMLVKAGSP---------VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLL-YLGMGVSGGEEG 136 (484)
Q Consensus 69 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~-~i~~pv~gg~~~ 136 (484)
+|+||+|||++.. +..+++++.+.+++|++||++||..|.+++++.+.+.++ |.. +.+.|++++|+.
T Consensus 77 -advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~ 155 (411)
T TIGR03026 77 -ADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEF 155 (411)
T ss_pred -CCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCc
Confidence 9999999998753 778888899999999999999999999999987666444 443 566777777777
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHh-ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011501 137 ARYGP---------SLMPGGSFEAYKHIEDILLKVA-AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 206 (484)
Q Consensus 137 a~~g~---------~i~~gg~~~~~~~v~~ll~~i~-~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l 206 (484)
+..|. .+++|+++++.++++++|+.++ .. ++++++.++|+++|+++|.+.+..+++++|+..+
T Consensus 156 ~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l 228 (411)
T TIGR03026 156 LREGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDG-------PVLVTSIETAEMIKLAENTFRAVKIAFANELARI 228 (411)
T ss_pred CCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCC-------CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665 5788999999999999999997 33 4889999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCch--hHHHhhhhcCCCCchHHHHHHHHHcCCCcchH
Q 011501 207 LKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGY--LVDKVLDKTGMKGTGKWTVQQAADLSVAAPTI 284 (484)
Q Consensus 207 ~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~--~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~ 284 (484)
|++.| +|++++.+++. .+ +.+.. ..|.|+| ....+.||+. +....|+++|+++|++
T Consensus 229 a~~~G-iD~~~v~~~~~---~~-----------~~i~~-~~~~pg~g~gg~c~~KD~~------~l~~~a~~~g~~~~l~ 286 (411)
T TIGR03026 229 CEALG-IDVYEVIEAAG---TD-----------PRIGF-NFLNPGPGVGGHCIPKDPL------ALIYKAKELGYNPELI 286 (411)
T ss_pred HHHhC-CCHHHHHHHhC---CC-----------CCCCC-CcCCCCCCCCCCchhhhHH------HHHHHHHhcCCCcHHH
Confidence 99999 99999998872 22 11111 2344443 3445777764 7888999999999988
Q ss_pred HHH
Q 011501 285 ESS 287 (484)
Q Consensus 285 ~~a 287 (484)
.++
T Consensus 287 ~~~ 289 (411)
T TIGR03026 287 EAA 289 (411)
T ss_pred HHH
Confidence 765
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=232.66 Aligned_cols=208 Identities=16% Similarity=0.118 Sum_probs=170.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh------------hcC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH------------SIQ 68 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~------------~l~ 68 (484)
|.+++|+|||+|.||.+||.+|+++||+|++||+++++++.+..... .+ ....+++++. .++
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~-----~~-~e~~l~~~l~~~~~~g~l~~~~~~~ 74 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI-----HI-VEPDLDMVVKTAVEGGYLRATTTPE 74 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC-----Cc-CCCCHHHHHHHHhhcCceeeecccc
Confidence 77789999999999999999999999999999999999887542110 00 1112222211 012
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC--------------eE
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL--------------LY 125 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~--------------~~ 125 (484)
.+|+||+|||++ ..+..+++++.+++++|++||+.||+.|.+++++...+.+++. .+
T Consensus 75 ~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v 154 (415)
T PRK11064 75 PADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINI 154 (415)
T ss_pred cCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEE
Confidence 499999999997 5778888999999999999999999999999999887776532 34
Q ss_pred Eecc--CCCCHHhhhcCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 126 LGMG--VSGGEEGARYGP-SLMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 126 i~~p--v~gg~~~a~~g~-~i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
+.+| +.+|...+..+. ..++|| +++++++++++|+.++..+ +++++.++|+++|+++|.+.+..+++++
T Consensus 155 ~~~PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~Ae~~Kl~~N~~~a~~ia~~n 227 (415)
T PRK11064 155 AYCPERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGE-------CVVTNSRTAEMCKLTENSFRDVNIAFAN 227 (415)
T ss_pred EECCCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCC-------eeeCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667 666665555555 567788 9999999999999998653 7899999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHH
Q 011501 202 EAYDVLKSVGKLSNEELQQVF 222 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~ 222 (484)
|+..+|++.| +|++++.+.+
T Consensus 228 E~~~lae~~G-iD~~~v~~~~ 247 (415)
T PRK11064 228 ELSLICADQG-INVWELIRLA 247 (415)
T ss_pred HHHHHHHHhC-CCHHHHHHHh
Confidence 9999999999 9999998886
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.6e-24 Score=223.35 Aligned_cols=248 Identities=12% Similarity=0.157 Sum_probs=183.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh------------cCCCCeeecCCHhHHHhhcCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ------------EGNLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~------------~~~~~~~~~~s~~e~~~~l~~a 70 (484)
+|||||||+|.||.+||.+|++ ||+|++||+++++++.+. .+.. .+ ++...++. +.++. +
T Consensus 6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g--~l~~t~~~-~~~~~---a 77 (425)
T PRK15182 6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREAR--YLKFTSEI-EKIKE---C 77 (425)
T ss_pred CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhC--CeeEEeCH-HHHcC---C
Confidence 5799999999999999999887 699999999999999987 3321 00 12334444 44555 9
Q ss_pred cEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEe--------ccCC
Q 011501 71 RVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLG--------MGVS 131 (484)
Q Consensus 71 dvIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~--------~pv~ 131 (484)
|++|+|||++ ..+....+++.+.+++|++||+.||+.|.+++++.+.+.+ .|..+.+ .++.
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~ 157 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERIN 157 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCC
Confidence 9999999988 3344445788899999999999999999999986555433 3555444 4566
Q ss_pred CCHHhhhcCC--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 011501 132 GGEEGARYGP--SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 209 (484)
Q Consensus 132 gg~~~a~~g~--~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~ 209 (484)
+|......+. .++.|++++..+.++++++.+... ..+++++.++|+++|+++|.+.+..+++++|+..+|++
T Consensus 158 ~G~a~~~~~~~~riv~G~~~~~~~~~~~ly~~~~~~------~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~ 231 (425)
T PRK15182 158 PGDKKHRLTNIKKITSGSTAQIAELIDEVYQQIISA------GTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNR 231 (425)
T ss_pred CCcccccccCCCeEEECCCHHHHHHHHHHHHHHhhc------CcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655544443 577778888889999999999732 14788999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 210 VGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 210 ~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.| +|.+++.++. +. ++.+... ..+- +++.++-. |. ++.+..++++|++++++.++
T Consensus 232 ~G-iD~~~v~~a~---~~----~~~~~~~----~pG~-vGG~Clpk----D~------~~L~~~a~~~g~~~~l~~~a 286 (425)
T PRK15182 232 LN-IDTEAVLRAA---GS----KWNFLPF----RPGL-VGGHCIGV----DP------YYLTHKSQGIGYYPEIILAG 286 (425)
T ss_pred hC-cCHHHHHHHh---cC----CCCcccC----CCCc-cccccccc----cH------HHHHHHHHhcCCCcHHHHHH
Confidence 99 9999998885 22 1221111 1111 44444332 22 14556788999998888765
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=219.46 Aligned_cols=200 Identities=16% Similarity=0.182 Sum_probs=161.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-----------hcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------QEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||+|.||.++|..|+. ||+|++||+++++++.+.+... ...+.++....++.++++. +|+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~---ad~ 76 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRD---ADY 76 (388)
T ss_pred CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcC---CCE
Confidence 489999999999999987775 9999999999999988875110 0000124444556777666 999
Q ss_pred EEEecCCC----------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-
Q 011501 73 IIMLVKAG----------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 73 Ii~~vp~~----------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~- 141 (484)
||+|||++ ..++++++++.. +++|++||+.||++|.+++++.+.+.+.++.| + |+.++.|.
T Consensus 77 vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~--~-----PE~l~~G~a 148 (388)
T PRK15057 77 VIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF--S-----PEFLREGKA 148 (388)
T ss_pred EEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE--C-----cccccCCcc
Confidence 99999987 567788888887 68999999999999999999998887766555 3 34444442
Q ss_pred --------ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Q 011501 142 --------SLMPGGSFEAYKHIEDILLK--VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 211 (484)
Q Consensus 142 --------~i~~gg~~~~~~~v~~ll~~--i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g 211 (484)
.+++|++++..+++.++|.. ++..+ .+++++.++|+++|++.|.+.+..+++++|+..+|++.|
T Consensus 149 ~~d~~~p~rvv~G~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~G 222 (388)
T PRK15057 149 LYDNLHPSRIVIGERSERAERFAALLQEGAIKQNI------PTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLG 222 (388)
T ss_pred cccccCCCEEEEEcCcHHHHHHHHHHHhhhhcCCC------ceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67889988888999998854 44332 347899999999999999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 011501 212 KLSNEELQQVF 222 (484)
Q Consensus 212 ~~~~~~i~~~~ 222 (484)
+|.+++.+++
T Consensus 223 -iD~~eV~~a~ 232 (388)
T PRK15057 223 -LNTRQIIEGV 232 (388)
T ss_pred -cCHHHHHHHh
Confidence 9999998887
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-25 Score=220.75 Aligned_cols=289 Identities=13% Similarity=0.065 Sum_probs=202.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----C-CC--CeeecCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----G-NL--PLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~~--~~~~~~s~~e~~~~l~~advIi~ 75 (484)
+|+|+|||+|.||.+||.+|+++|++|++|+|++++.+.+.....+. + .. ++..+++++++++. +|+||+
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~---aD~Vi~ 80 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAG---ADFAVV 80 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcC---CCEEEE
Confidence 57999999999999999999999999999999999888877542110 0 00 14466788887766 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHH--HHHHHHHHHH---cCCeEEeccCCCCHHhhhcCC-ccccCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYEN--TERRQKAVAE---LGLLYLGMGVSGGEEGARYGP-SLMPGGS 148 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~--~~~~~~~l~~---~g~~~i~~pv~gg~~~a~~g~-~i~~gg~ 148 (484)
|||+. ++++++ +.+.++.++|++++. .+.+ .+.+.+.+.+ +++.+++.|....+.+...+. .++.|++
T Consensus 81 ~v~~~-~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 81 AVPSK-ALRETL----AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred ECchH-HHHHHH----HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 99997 566665 445677899999995 5443 5566666655 677777777554444444455 7789999
Q ss_pred HHHHHHHHHHHHHHhccCCC-CCCceEEeCC---------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPD-SGPCVTYVGK---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~-~~~~~~~~G~---------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
++.+++++++|+..+.++.- .+-.-.++|. .|.+..+|+.+|......++.++|++.++++.| ++++++
T Consensus 156 ~~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G-~~~~~~ 234 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALG-AEEATF 234 (328)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhC-CCccch
Confidence 99999999999988765300 0000003443 589999999999999999999999999999999 999999
Q ss_pred HHHHHhhcc-Ccchhhhhhhhcc--ccccc---cCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHH
Q 011501 219 QQVFSEWNK-GELLSFLIEITAD--IFGIK---DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 219 ~~~~~~~~~-g~~~s~l~~~~~~--~l~~~---~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~ 292 (484)
.++.....- ++..|+.++.+.. .+..+ +.+.+.|.+....+|+. ++.+.++++|+++|++.. +++.
T Consensus 235 ~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~------~~~~la~~~~~~~Pl~~~-~~~~- 306 (328)
T PRK14618 235 YGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVK------ALDAWAKAHGHDLPIVEA-VARV- 306 (328)
T ss_pred hcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHH------HHHHHHHHhCCCCCHHHH-HHHH-
Confidence 887521000 2445666655532 33322 12334455555566664 788999999999998764 3444
Q ss_pred HhcCchHHHHHHHhcc
Q 011501 293 LSGLKEERVEAAKVFR 308 (484)
Q Consensus 293 ~s~~~~~r~~~~~~~~ 308 (484)
+-..++..+....++.
T Consensus 307 ~~~~~~~~~~~~~~~~ 322 (328)
T PRK14618 307 ARGGWDPLAGLRSLMG 322 (328)
T ss_pred HhCCCCHHHHHHHHhc
Confidence 4444455566665554
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-24 Score=214.85 Aligned_cols=279 Identities=15% Similarity=0.114 Sum_probs=190.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---C----CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---N----LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~----~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||..+|.+|+++|++|++|||++++++.+.+.+.... + .++..+.+++++++. +|+||+|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~vi~~ 78 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALAD---ADLILVA 78 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhC---CCEEEEe
Confidence 68999999999999999999999999999999999888776431100 0 024556778777766 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecC-CCChHHHHHHHHHHHHc-----CCeEEeccCCCCHHhhhcCC-ccccCCCH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGG-NEWYENTERRQKAVAEL-----GLLYLGMGVSGGEEGARYGP-SLMPGGSF 149 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~-----g~~~i~~pv~gg~~~a~~g~-~i~~gg~~ 149 (484)
||+. +++++++++.+.+.++++||+++ +..+....++.+.+.+. ...++.+|..+.+..+..+. .++.|++.
T Consensus 79 v~~~-~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 79 VPSQ-ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred CCHH-HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 9985 89999999999988999999998 55554454555555543 34456667655444443444 55677899
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCC
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGK 212 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-----------------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~ 212 (484)
+.+++++++|+..+.++ .+..+ .|.+..+|+.+|.+....++.++|++.++++.|
T Consensus 158 ~~~~~~~~~l~~~~~~~-------~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G- 229 (325)
T PRK00094 158 ELAERVQELFHSPYFRV-------YTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALG- 229 (325)
T ss_pred HHHHHHHHHhCCCCEEE-------EecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-
Confidence 99999999999877432 22211 378888999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccCc----chhhhhhhhc--cccccccCCC-----CchhHHHhhhhcCCCCchHHHHHHHHHcCCCc
Q 011501 213 LSNEELQQVFSEWNKGE----LLSFLIEITA--DIFGIKDDKG-----DGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 281 (484)
Q Consensus 213 ~~~~~i~~~~~~~~~g~----~~s~l~~~~~--~~l~~~~~~~-----~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~ 281 (484)
++++.+.++.. .+. ..|+..+.+. ..+..+..+. .+ .+....+|++ .+.+.|+++|+|+
T Consensus 230 ~d~~~~~~~~~---~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~------~~~~~a~~~~~~~ 299 (325)
T PRK00094 230 ANPETFLGLAG---LGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAK------AVYELAKKLGVEM 299 (325)
T ss_pred CChhhhhcccH---hhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHH------HHHHHHHHhCCCC
Confidence 99999977642 121 1121111111 1111110000 00 1112233432 6788999999999
Q ss_pred chHHHHHHHHHHhcCchHHHHHHHh
Q 011501 282 PTIESSLDARFLSGLKEERVEAAKV 306 (484)
Q Consensus 282 p~~~~av~~r~~s~~~~~r~~~~~~ 306 (484)
|+... +++.+ ...++.++.+..+
T Consensus 300 P~~~~-~~~~~-~~~~~~~~~~~~~ 322 (325)
T PRK00094 300 PITEA-VYAVL-YEGKDPREAVEDL 322 (325)
T ss_pred CHHHH-HHHHH-cCCCCHHHHHHHH
Confidence 98764 45554 4444455544433
|
|
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-25 Score=211.19 Aligned_cols=118 Identities=14% Similarity=0.288 Sum_probs=93.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHH
Q 011501 324 KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFA 403 (484)
Q Consensus 324 ~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~ 403 (484)
||||||||||||||+||+++|+|++|+.+.+..+ .++.+|++.||+| .|+||||+++.++|++++..++.|+|.+.+
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~--~ei~~vf~~Wn~g-~l~S~Lieit~~il~~~d~~g~~lld~I~d 77 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSN--EEIADVFEEWNKG-ELRSYLIEITADILRKKDETGGPLLDKILD 77 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--H--HHHHHHHHHHHTT-TT-BHHHHHHHHHHT-B-TTSSBGGGGB-S
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccch--hHHHHHHHHHCcC-chhhHHHHHHHHHHhhccCccCcchhhhCC
Confidence 7999999999999999999999999997543222 4667778889998 699999999999999877666899999999
Q ss_pred HHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 404 KEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 404 ~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
...+|++| +|++++|+++|+|+|+|++||+ ++++++.+|..
T Consensus 78 ~a~~kGtG--~Wt~~~a~~~gvp~p~I~~a~~aR~~S~~k~~R~~ 120 (291)
T PF00393_consen 78 KAGQKGTG--KWTVQEALELGVPAPTIAAAVFARFLSAQKEERVA 120 (291)
T ss_dssp ----BSHH--HHHHHHHHHHT---HHHHHHHHHHHHHHTHHHHHH
T ss_pred ccCCCCcc--chHHHHHHHhCCCccHHHHHHHHHHHhcCCcHHHH
Confidence 99999999 9999999999999999999997 77777777654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-22 Score=197.95 Aligned_cols=251 Identities=11% Similarity=0.062 Sum_probs=182.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
+++|+|||+|.||.+||.+|+++|++|++||++++..+..... ....+.. ++..+.+++++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 3689999999999999999999999999999999877654321 0011000 2456778887777
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccc
Q 011501 66 SIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLM 144 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~ 144 (484)
. +|+|+.|+|+..++... +..+.+.. +++++|.+||+. ....++.+.+...+..+.+.|+.+.... ....+
T Consensus 82 ~---ad~Vi~avpe~~~~k~~~~~~l~~~~-~~~~ii~ssts~-~~~~~la~~~~~~~~~~~~hp~~p~~~~---~lvei 153 (308)
T PRK06129 82 D---ADYVQESAPENLELKRALFAELDALA-PPHAILASSTSA-LLASAFTEHLAGRERCLVAHPINPPYLI---PVVEV 153 (308)
T ss_pred C---CCEEEECCcCCHHHHHHHHHHHHHhC-CCcceEEEeCCC-CCHHHHHHhcCCcccEEEEecCCCcccC---ceEEE
Confidence 6 99999999998655544 45555554 555666655554 4566777777667778888999753211 12345
Q ss_pred cC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHH
Q 011501 145 PG---GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 145 ~g---g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
++ +++++++.++++++.+|++ ++++|+.+.|+ ++ |.+ ..++++|++.++++.| +|++++.++
T Consensus 154 v~~~~t~~~~~~~~~~~~~~lG~~-------~v~v~~~~~G~---i~-nrl---~~a~~~EA~~l~~~g~-~~~~~id~~ 218 (308)
T PRK06129 154 VPAPWTAPATLARAEALYRAAGQS-------PVRLRREIDGF---VL-NRL---QGALLREAFRLVADGV-ASVDDIDAV 218 (308)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-------EEEecCCCccH---HH-HHH---HHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 54 7999999999999999977 49999888886 33 433 4478899999999988 999999999
Q ss_pred HHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHH
Q 011501 222 FSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSL 288 (484)
Q Consensus 222 ~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av 288 (484)
+ ..+.+.+|.+ ..+.... |.++++|....+.++.. +..+.+.+.+.|.|++..-+
T Consensus 219 ~---~~~~g~~~~~--~gp~~~~-d~~~~~g~~~~~~k~~~------l~~~~~~~~~~~~~~~~~~~ 273 (308)
T PRK06129 219 I---RDGLGLRWSF--MGPFETI-DLNAPGGVADYAQRYGP------MYRRMAAERGQPVPWDGELV 273 (308)
T ss_pred H---HhccCCCccC--cCHHHHH-hccccccHHHHHHHHHH------HHHhhccccCCCchhhHHHH
Confidence 7 3566666655 3343332 44667788888888764 67778888999999876543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-22 Score=201.33 Aligned_cols=261 Identities=15% Similarity=0.132 Sum_probs=183.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.|||+|||+|.||.+||.+|+++||+|.+|||++. .++++++++ +|+||+++|+. +
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~--------------------~~~~~~~~~---advvi~~vp~~-~ 59 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG--------------------LSLAAVLAD---ADVIVSAVSMK-G 59 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC--------------------CCHHHHHhc---CCEEEEECChH-H
Confidence 47999999999999999999999999999999853 256677766 99999999995 8
Q ss_pred HHHHHHHHhhh-cCCCCEEEecCC-CChHHHHHHHHHHHHcCCeEEeccCC--CCHHhhh----c-CC-ccccCCCHHHH
Q 011501 83 VDQTIKTLSVY-MEKGDCIIDGGN-EWYENTERRQKAVAELGLLYLGMGVS--GGEEGAR----Y-GP-SLMPGGSFEAY 152 (484)
Q Consensus 83 v~~vl~~l~~~-l~~g~iiId~st-~~~~~~~~~~~~l~~~g~~~i~~pv~--gg~~~a~----~-g~-~i~~gg~~~~~ 152 (484)
++++++++.++ +.++.+||++++ ..|.......+.+.. .|.+.|+. +|+..+. . +. .+++|++.+++
T Consensus 60 ~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~---~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~ 136 (308)
T PRK14619 60 VRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQA---AFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAA 136 (308)
T ss_pred HHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHH---HcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHH
Confidence 99999888774 778899999987 555544444444433 24455653 3433221 2 23 67889999999
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~-----------------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
+.++++|+..+.++ ++.++ .|.+...|+.+|......++.+.|++.++++.| +++
T Consensus 137 ~~v~~ll~~~~~~~-------~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G-~~~ 208 (308)
T PRK14619 137 ETVQQIFSSERFRV-------YTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLG-AQT 208 (308)
T ss_pred HHHHHHhCCCcEEE-------EecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 99999999877553 43333 344555669999999999999999999999999 999
Q ss_pred HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchh------HHHhhhhcCCCCchH----HHHHHHHHcCCCcchHH
Q 011501 216 EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYL------VDKVLDKTGMKGTGK----WTVQQAADLSVAAPTIE 285 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~------l~~i~~~~~~k~tg~----~~~~~A~~~gvp~p~~~ 285 (484)
+.+.++ .|.+++++.. ..... ++|..+|. ++.+.+.+.++.+|. .+.+.++++|+++|++.
T Consensus 209 ~t~~~~-----~g~gd~~~t~---~~~~~-rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~ 279 (308)
T PRK14619 209 ETFYGL-----SGLGDLLATC---TSPLS-RNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITE 279 (308)
T ss_pred cccccc-----cchhhhheee---cCCCC-ccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHH
Confidence 988763 3555555521 11111 12333333 333344444444443 56678999999999876
Q ss_pred HHHHHHHHhcCchHHHHHHHhccC
Q 011501 286 SSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 286 ~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
. +++.+ ....+.++....++..
T Consensus 280 ~-v~~i~-~~~~~~~~~~~~l~~~ 301 (308)
T PRK14619 280 Q-VYRLL-QGEITPQQALEELMER 301 (308)
T ss_pred H-HHHHH-cCCCCHHHHHHHHHcC
Confidence 4 45544 4445666666666653
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=206.09 Aligned_cols=122 Identities=12% Similarity=0.223 Sum_probs=107.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCC-CCCCccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNP-DLANVLV 398 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~-~~~~ll~ 398 (484)
++|+||||||||||||||+||.++|.|++||..-...+ .++++|+.-||+| .+.|||+++..++|+.++ +..+.|+
T Consensus 175 ~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~--~ei~~vF~~WN~g-eL~SYLIeIT~~IL~~kD~~~~kplv 251 (473)
T COG0362 175 PDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSA--EEIAEVFEEWNKG-ELDSYLIEITADILRKKDEEGGKPLV 251 (473)
T ss_pred CCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHhccC-cchHHHHHHHHHHHhhcCcccCCchH
Confidence 46899999999999999999999999999998544333 4455566669999 999999999999999754 4456999
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 399 DPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
|.+++.+.||++| ||+++.|+++|+|+|.|.+|++ |+++++.+|..
T Consensus 252 d~ILD~AgQKGTG--kWt~~~AldlGvP~t~I~eaVfAR~lSs~K~eR~~ 299 (473)
T COG0362 252 DKILDKAGQKGTG--KWTVISALDLGVPLTLITEAVFARYLSSLKDERVA 299 (473)
T ss_pred HHHHHHhcCCCcc--hhhHHHHHHcCCCcHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999 9999999999999999999997 99999988754
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.7e-23 Score=196.53 Aligned_cols=122 Identities=11% Similarity=0.169 Sum_probs=112.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVD 399 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~ 399 (484)
++|+||||||||||||||+||.++|.|++|+.+.+..+ .+++++++-||+| ++.|+|+++..++|+-+++..+.|++
T Consensus 179 ~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~--~eia~vF~~WN~g-eleSfLieIT~dIlk~~d~~G~~lv~ 255 (487)
T KOG2653|consen 179 EGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSN--DEIAEVFDDWNKG-ELESFLIEITADILKFKDEDGKPLVD 255 (487)
T ss_pred CCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcH--HHHHHHHHhhccc-chhHHHHHHhHHHhheeccCCChHHH
Confidence 46899999999999999999999999999999776666 7788888889999 99999999999999877666678999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
.+.+.+.+|+++ +|++..|+++|+|+|+|.+|++ ++++++.+|..
T Consensus 256 kI~D~aGqKGTG--kwt~~~Ale~g~Pv~lI~eavfaRclS~lKdeR~~ 302 (487)
T KOG2653|consen 256 KILDKAGQKGTG--KWTVISALELGVPVTLIGEAVFARCLSALKDERVR 302 (487)
T ss_pred HHHhhhcCCCcc--HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999997 89999988865
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=182.17 Aligned_cols=205 Identities=22% Similarity=0.264 Sum_probs=163.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
++|||||||.+|.++|..++++|++|++||.|+.+++.+..- ....| +++.+++++++..
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g--~lraTtd~~~l~~--- 84 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG--KLRATTDPEELKE--- 84 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC--CceEecChhhccc---
Confidence 689999999999999999999999999999999998776531 11111 4677777777653
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeE-EeccCCCCHHh
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLY-LGMGVSGGEEG 136 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~-i~~pv~gg~~~ 136 (484)
||++|+|||++ ..+....+.+.+.|++|++||--||++|.+|+++...+.+. |..| .|-.+.-.|+.
T Consensus 85 -~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPER 163 (436)
T COG0677 85 -CDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPER 163 (436)
T ss_pred -CCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccc
Confidence 99999999986 24566778999999999999999999999999999887663 4433 23222233333
Q ss_pred hhcCC---------ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 137 ARYGP---------SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 137 a~~g~---------~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
...|. .++.|-+++..+.+..+++.+-.. ++.+.+.-.++++|+..|.+...++++++|..-+|
T Consensus 164 v~PG~~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~-------~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~ 236 (436)
T COG0677 164 VLPGNVLKELVNNPKVIGGVTPKCAELAAALYKTIVEG-------VIPVTSARTAEMVKLTENTFRDVNIALANELALIC 236 (436)
T ss_pred cCCCchhhhhhcCCceeecCCHHHHHHHHHHHHHheEE-------EEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 33332 344444788888999999998764 47777889999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011501 208 KSVGKLSNEELQQVF 222 (484)
Q Consensus 208 ~~~g~~~~~~i~~~~ 222 (484)
.+.| +|..++.++-
T Consensus 237 ~~~G-IdvwevIeaA 250 (436)
T COG0677 237 NAMG-IDVWEVIEAA 250 (436)
T ss_pred HHhC-CcHHHHHHHh
Confidence 9999 9999887774
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=178.48 Aligned_cols=255 Identities=16% Similarity=0.146 Sum_probs=194.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|++|...+.+|++.||+|..+|.++++++.+.+. ....| +++++++.++.++.
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g--Rl~fTtd~~~a~~~-- 76 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG--RLRFTTDYEEAVKD-- 76 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC--cEEEEcCHHHHHhc--
Confidence 589999999999999999999999999999999998876532 11111 47889999998887
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC----CeEEeccCCCCHH
Q 011501 69 KPRVIIMLVKAGS---------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG----LLYLGMGVSGGEE 135 (484)
Q Consensus 69 ~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~i~~pv~gg~~ 135 (484)
+|++|+|||++. .++.+++.+.+.++...+||.-||+.+.++.++.+.+.+.. +..+..|-+-.+-
T Consensus 77 -adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG 155 (414)
T COG1004 77 -ADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREG 155 (414)
T ss_pred -CCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCc
Confidence 999999999874 46788899999998889999999999999999888776543 3445555443333
Q ss_pred hhhcC---C-ccccCCCH-HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 011501 136 GARYG---P-SLMPGGSF-EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 210 (484)
Q Consensus 136 ~a~~g---~-~i~~gg~~-~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~ 210 (484)
.|... | .+++|... .+.+.++++++.+..+ .+.+.+....+++++|+..|++.+.-+++++|.-.+|++.
T Consensus 156 ~Av~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~-----~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~ 230 (414)
T COG1004 156 SAVYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQ-----DVPILFTDLREAELIKYAANAFLATKISFINEIANICEKV 230 (414)
T ss_pred chhhhccCCCeEEEccCChhHHHHHHHHHhhhhhc-----CCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33221 3 57888744 4677788888776431 2234455578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHH
Q 011501 211 GKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSL 288 (484)
Q Consensus 211 g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av 288 (484)
| +|.+++.+.+. ++ -+|....+..+-.|++.++.+.++. .+..|+++|.+.+++.+++
T Consensus 231 g-~D~~~V~~gIG------lD---~RIG~~fl~aG~GyGGsCfPKD~~A----------L~~~a~~~~~~~~ll~avv 288 (414)
T COG1004 231 G-ADVKQVAEGIG------LD---PRIGNHFLNAGFGYGGSCFPKDTKA----------LIANAEELGYDPNLLEAVV 288 (414)
T ss_pred C-CCHHHHHHHcC------CC---chhhHhhCCCCCCCCCcCCcHhHHH----------HHHHHHhcCCchHHHHHHH
Confidence 9 99999988761 11 1333344555556788787766544 4678999999988887653
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=182.02 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=158.0
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHH-----HHHHHHhhhcCCCCeeecC
Q 011501 4 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKV-----DETVERAKQEGNLPLYGFH 58 (484)
Q Consensus 4 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~ 58 (484)
|||.|+|.|+. |.+||.+|+++||+|++|||+++.. +.+... ++..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~-------Gi~~as 73 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDA-------GVKVVS 73 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHC-------CCEEeC
Confidence 58999999975 7889999999999999999998743 333321 366778
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHH----HcCCeEE-eccCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVA----ELGLLYL-GMGVSG 132 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~----~~g~~~i-~~pv~g 132 (484)
++.++++. +|+||+|+|.+.++++++.++.+.++++.+|||+||+.+... +.+.+.+. ..|+.+. ++++.|
T Consensus 74 d~~eaa~~---ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G 150 (342)
T PRK12557 74 DDAEAAKH---GEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG 150 (342)
T ss_pred CHHHHHhC---CCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc
Confidence 88888876 999999999886589999999999999999999999998877 45555553 3366554 345556
Q ss_pred CHHhhh----cCC-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 133 GEEGAR----YGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 133 g~~~a~----~g~-~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
++.+.. .|+ +...+++++.+++++++|+.++.+ +++++ .|.++.+|+++|.+.+..++.++|++.++
T Consensus 151 ae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-------v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~ 222 (342)
T PRK12557 151 TPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKE-------PYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVG 222 (342)
T ss_pred cccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCE-------EEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543322 122 233345999999999999999976 36666 69999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 011501 208 KSVGKLSNEELQQVF 222 (484)
Q Consensus 208 ~~~g~~~~~~i~~~~ 222 (484)
++.| .+++++.+-+
T Consensus 223 ~~~~-~~p~~~~~~~ 236 (342)
T PRK12557 223 TKII-KAPKEMIEKQ 236 (342)
T ss_pred HHhC-CCHHHHHHHH
Confidence 9999 8888776654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-19 Score=184.05 Aligned_cols=256 Identities=13% Similarity=0.114 Sum_probs=185.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhc---C---------CCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQE---G---------NLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~---~---------~~~~~~~~s~~e~~~~l~ 68 (484)
+|+|+|||+|.+|..+|..|+++| ++|++||+++++++.+.+....- + +-++..+++..+.++.
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~-- 78 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE-- 78 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc--
Confidence 368999999999999999999884 78999999999998875422100 0 0025667777776766
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--C--CeEEeccC
Q 011501 69 KPRVIIMLVKAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--G--LLYLGMGV 130 (484)
Q Consensus 69 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g--~~~i~~pv 130 (484)
+|++|+|||++. .++++++.+.++++++++||..||..|.+++++.+.+.+. | +++.-+|-
T Consensus 79 -advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PE 157 (473)
T PLN02353 79 -ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPE 157 (473)
T ss_pred -CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCC
Confidence 999999998654 5678889999999999999999999999999988877663 3 44556675
Q ss_pred CCCHHhhhcC---C-ccccCCC-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 131 SGGEEGARYG---P-SLMPGGS-----FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 131 ~gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
.-.+-.+... + .+++||. +++.+.++.+++.+... ..+.+.+..+++++|++.|.+.+..+++++
T Consensus 158 rl~~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~------~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~N 231 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPE------ERIITTNLWSAELSKLAANAFLAQRISSVN 231 (473)
T ss_pred ccCCCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcC------CCEEecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333222 3 5677873 34678888999888632 135567789999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCC-
Q 011501 202 EAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA- 280 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp- 280 (484)
|...+|++.| +|..++.+.+ +... + +....+..+-.+++.++.... ++.+..|+++|++
T Consensus 232 Ela~lce~~g-iD~~eV~~~~---~~d~---r---ig~~~l~PG~G~GG~ClpkD~----------~~L~~~a~~~g~~~ 291 (473)
T PLN02353 232 AMSALCEATG-ADVSQVSHAV---GKDS---R---IGPKFLNASVGFGGSCFQKDI----------LNLVYICECNGLPE 291 (473)
T ss_pred HHHHHHHHhC-CCHHHHHHHh---CCCC---c---CCCCCCCCCCCCCCcchhhhH----------HHHHHHHHHcCCch
Confidence 9999999998 9999988876 2211 1 111222333335555554332 1345678888987
Q ss_pred -cchHHHH
Q 011501 281 -APTIESS 287 (484)
Q Consensus 281 -~p~~~~a 287 (484)
.+++.++
T Consensus 292 ~~~l~~~~ 299 (473)
T PLN02353 292 VAEYWKQV 299 (473)
T ss_pred HHHHHHHH
Confidence 6666544
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.6e-19 Score=185.87 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=149.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh---------------hcCCCCeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------QEGNLPLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~e~~~~l 67 (484)
.++|||||+|.||.+||.+|+++|++|++||+++++.+.+.+... ..+ ++..++++++++++
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~~~~~~~ea~~~- 80 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEG--RLTFCASLAEAVAG- 80 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhh--ceEeeCCHHHHhcC-
Confidence 368999999999999999999999999999999998776532100 000 25677888888877
Q ss_pred CCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-cccc
Q 011501 68 QKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMP 145 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~ 145 (484)
+|+|+.|+|+..++++. +.++.+.++++ +||++||+.+..+ .+.+.+..++..++++|+... ..++ ..++
T Consensus 81 --aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv 152 (495)
T PRK07531 81 --ADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELV 152 (495)
T ss_pred --CCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEc
Confidence 99999999999777764 46777766655 5677777776544 566677677888899987632 2446 6677
Q ss_pred CCC---HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhCCCCHHHHHHH
Q 011501 146 GGS---FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQL-IAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 146 gg~---~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~-~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
+|+ ++.++.++++|+.+|.++ ++++. .+.|.+...++.. ++|++.|+++.| ++++++.++
T Consensus 153 ~g~~t~~e~~~~~~~~~~~lG~~~-------v~~~k--------~~~gfi~nrl~~a~~~EA~~L~~~g~-~s~~~id~~ 216 (495)
T PRK07531 153 GGGKTSPETIRRAKEILREIGMKP-------VHIAK--------EIDAFVGDRLLEALWREALWLVKDGI-ATTEEIDDV 216 (495)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEE-------EeecC--------CCcchhHHHHHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 775 899999999999999764 77773 5555555555666 599999999988 999999999
Q ss_pred HH
Q 011501 222 FS 223 (484)
Q Consensus 222 ~~ 223 (484)
+.
T Consensus 217 ~~ 218 (495)
T PRK07531 217 IR 218 (495)
T ss_pred Hh
Confidence 84
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=175.07 Aligned_cols=292 Identities=17% Similarity=0.200 Sum_probs=204.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC--------CeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL--------PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~--------~~~~~~s~~e~~~~l~~advIi 74 (484)
+++|+|||.|.||++||..|+++||+|.+|.|+++.++++.....+. .| ++..+++++++++. +|+|+
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~-~yLp~i~lp~~l~at~Dl~~a~~~---ad~iv 76 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENP-KYLPGILLPPNLKATTDLAEALDG---ADIIV 76 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCc-cccCCccCCcccccccCHHHHHhc---CCEEE
Confidence 36899999999999999999999999999999999998887653322 11 46778889999887 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHHHc-C---CeEEeccCCCCHHhhhcCC-cc-ccCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVAEL-G---LLYLGMGVSGGEEGARYGP-SL-MPGG 147 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~~~-g---~~~i~~pv~gg~~~a~~g~-~i-~~gg 147 (484)
++||.. .++++++++.+.+.++.+++.++...-..+.+ +.+.+++. + +.++..|-+. .+-++.-| .+ +.+-
T Consensus 77 ~avPs~-~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A-~EVa~g~pta~~vas~ 154 (329)
T COG0240 77 IAVPSQ-ALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFA-KEVAQGLPTAVVVASN 154 (329)
T ss_pred EECChH-HHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHH-HHHhcCCCcEEEEecC
Confidence 999996 89999999988999999999999876554444 33444332 3 4445555433 34455555 44 4555
Q ss_pred CHHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 148 SFEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 148 ~~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
|++..++++.+|.. +|.++....|+++-++ .|....+.+..|+-.+.+...++|+..+....| -.++
T Consensus 155 d~~~a~~v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA-~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG-~~~~ 232 (329)
T COG0240 155 DQEAAEKVQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIA-AGIADGLGLGDNAKAALITRGLAEMTRLGVALG-AKPE 232 (329)
T ss_pred CHHHHHHHHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHH-HHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhC-CCcc
Confidence 88888889988854 2222112236666665 377777889999999999999999999999999 6777
Q ss_pred HHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHH----HHHHHcCCCcchHHHHHHHHH
Q 011501 217 ELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 217 ~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~----~~A~~~gvp~p~~~~av~~r~ 292 (484)
++..+- .-|++--...+..++..+.+.-...+..++......+|..+|..+. +.|+++|+.+|+++ +|++-+
T Consensus 233 T~~gLs---GlGDLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~-~Vy~vl 308 (329)
T COG0240 233 TFMGLS---GLGDLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITE-AVYRVL 308 (329)
T ss_pred hhcccc---cccceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHH-HHHHHH
Confidence 654431 1133333333333333332222233455677777788999997776 45889999999765 566666
Q ss_pred HhcCchHHHHHHHhc
Q 011501 293 LSGLKEERVEAAKVF 307 (484)
Q Consensus 293 ~s~~~~~r~~~~~~~ 307 (484)
..... .+..+..++
T Consensus 309 ~~~~~-~~~~~~~L~ 322 (329)
T COG0240 309 YEGLD-PKEAIEELM 322 (329)
T ss_pred hCCCC-HHHHHHHHh
Confidence 65544 334444443
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-18 Score=169.59 Aligned_cols=192 Identities=15% Similarity=0.180 Sum_probs=144.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
++|+|||+|.||.++|.+|+++|++|++||++++.++.+.+. +...+.. +++.+.++++.++.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 589999999999999999999999999999999988776532 1100000 24566778777776
Q ss_pred cCCCcEEEEecCCCchHHH-HHHHHhhhcCCCCEE-EecCCCChHHHHHHHHHHH-HcCCeEEeccCCCCHHhhhcCC-c
Q 011501 67 IQKPRVIIMLVKAGSPVDQ-TIKTLSVYMEKGDCI-IDGGNEWYENTERRQKAVA-ELGLLYLGMGVSGGEEGARYGP-S 142 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~-~~g~~~i~~pv~gg~~~a~~g~-~ 142 (484)
+|+||+|+|++.+++. ++.++.+.++++.++ +++||..+....+..+... ..|.+|+ +|+.++ + .
T Consensus 82 ---aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lv 150 (288)
T PRK09260 82 ---ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLV 150 (288)
T ss_pred ---CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceE
Confidence 9999999999876654 457788888888866 7889888765443332211 1478888 788664 4 6
Q ss_pred cccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 143 LMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 143 i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
.|++| +++++++++++++.+++++ +++++ ..| ++.|.+.+ .+++|++.+.+... .+++++.
T Consensus 151 e~v~g~~t~~~~~~~~~~~l~~lg~~~-------v~v~d-~~G----f~~nRl~~---~~~~ea~~~~~~gv-~~~~~iD 214 (288)
T PRK09260 151 ELIRGLETSDETVQVAKEVAEQMGKET-------VVVNE-FPG----FVTSRISA---LVGNEAFYMLQEGV-ATAEDID 214 (288)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHH
Confidence 67777 9999999999999999764 88875 333 45565554 46699999998765 7899998
Q ss_pred HHH
Q 011501 220 QVF 222 (484)
Q Consensus 220 ~~~ 222 (484)
.++
T Consensus 215 ~~~ 217 (288)
T PRK09260 215 KAI 217 (288)
T ss_pred HHH
Confidence 886
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-18 Score=168.96 Aligned_cols=194 Identities=12% Similarity=0.180 Sum_probs=135.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS-KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|+.|+|+|||+|.||.+|+.+|.++| ++|.+|||+++ +.+.+.... ++..+.++.++++. +|+||+
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDvVil 71 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKY------GVKGTHNKKELLTD---ANILFL 71 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhc------CceEeCCHHHHHhc---CCEEEE
Confidence 77789999999999999999999998 78999999864 556665432 24567788888776 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEeccCCCC---HHhhh-cCCccccCCC--
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYLGMGVSGG---EEGAR-YGPSLMPGGS-- 148 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~~pv~gg---~~~a~-~g~~i~~gg~-- 148 (484)
|||+. .+.++++++.+.+.++++||++ ++..+...++.. ..+ +|++++ ...+. .+.+++++++
T Consensus 72 av~p~-~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~ 141 (279)
T PRK07679 72 AMKPK-DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLL----QKD-----VPIIRAMPNTSAAILKSATAISPSKHA 141 (279)
T ss_pred EeCHH-HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHc----CCC-----CeEEEECCCHHHHHhcccEEEeeCCCC
Confidence 99987 7888889998888889999996 666655444422 222 233333 23344 3346776664
Q ss_pred -HHHHHHHHHHHHHHhccCCCCCCceEE--eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011501 149 -FEAYKHIEDILLKVAAQVPDSGPCVTY--VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW 225 (484)
Q Consensus 149 -~~~~~~v~~ll~~i~~~~~~~~~~~~~--~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 225 (484)
++.++.++++|+.+|..+.-.+. .++ .|..|+|.. +.+..+..+.| .+.+.| +++++..+++...
T Consensus 142 ~~~~~~~v~~l~~~~G~~~~v~e~-~~~~~~a~~Gsgpa-------~~~~~~eal~e---~~~~~G-l~~~~a~~~~~~~ 209 (279)
T PRK07679 142 TAEHIQTAKALFETIGLVSVVEEE-DMHAVTALSGSGPA-------YIYYVVEAMEK---AAKKIG-LKEDVAKSLILQT 209 (279)
T ss_pred CHHHHHHHHHHHHhCCcEEEeCHH-HhhhHHHhhcCHHH-------HHHHHHHHHHH---HHHHcC-CCHHHHHHHHHHH
Confidence 67889999999999964200000 014 555566654 22333333333 467888 9999999998543
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=162.27 Aligned_cols=186 Identities=18% Similarity=0.187 Sum_probs=138.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEE-eCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVY-NRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||||||+|.||.+|+.+|.++|+ +|++| ||++++.+.+.+. ++..+.++.++++. +|+||+|+|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~-------g~~~~~~~~e~~~~---aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL-------GVKTAASNTEVVKS---SDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc-------CCEEeCChHHHHhc---CCEEEEEEC
Confidence 589999999999999999999998 89999 9999988776543 25667888888876 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+ .++++++.++.+.+.++++||+..++..... +.+.+.. . .++. +|..+...+..... +...+++++.++.++
T Consensus 71 ~-~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~--l~~~~~~-~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 145 (266)
T PLN02688 71 P-QVVKDVLTELRPLLSKDKLLVSVAAGITLAD--LQEWAGG-R-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVA 145 (266)
T ss_pred c-HHHHHHHHHHHhhcCCCCEEEEecCCCcHHH--HHHHcCC-C-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHH
Confidence 5 5899999999888888998887755443222 2222222 1 5664 67666554433222 333456899999999
Q ss_pred HHHHHHhccCCCCCCceEEeC---------CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 157 DILLKVAAQVPDSGPCVTYVG---------KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G---------~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
++|+.+|. + ++++ ..|+|.. +.+.++..+.|+ +.+.| +++++..+++.
T Consensus 146 ~l~~~~G~-~-------~~~~e~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~G-l~~~~a~~~~~ 202 (266)
T PLN02688 146 TLFGAVGK-I-------WVVDEKLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAG-LPRDVALSLAA 202 (266)
T ss_pred HHHHhCCC-E-------EEeCHHHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999996 4 6663 3455554 255677777888 67788 99999999874
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-17 Score=168.54 Aligned_cols=265 Identities=18% Similarity=0.149 Sum_probs=163.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC---C-------CeeecCCHhHHHhhcCCCcE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN---L-------PLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~---~-------~~~~~~s~~e~~~~l~~adv 72 (484)
+|+|+|||+|.||..+|..|+++|++|++|||++. .+.+.+.+..... . ++....+. +.+. .+|+
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~D~ 76 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA---TADL 76 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhcc---CCCE
Confidence 46899999999999999999999999999999753 3554443211000 0 01223344 3333 3999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec--c---CCCCHHhhh---cCCccc
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM--G---VSGGEEGAR---YGPSLM 144 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~--p---v~gg~~~a~---~g~~i~ 144 (484)
||+|||.. ++.++++.+.+.+.++++|++++++. ...+.+.+.+.+. .++++ + +.+++..+. .|. +.
T Consensus 77 vil~vk~~-~~~~~~~~l~~~~~~~~iii~~~nG~-~~~~~l~~~~~~~--~~~~g~~~~~~~~~~pg~~~~~~~g~-l~ 151 (341)
T PRK08229 77 VLVTVKSA-ATADAAAALAGHARPGAVVVSFQNGV-RNADVLRAALPGA--TVLAGMVPFNVISRGPGAFHQGTSGA-LA 151 (341)
T ss_pred EEEEecCc-chHHHHHHHHhhCCCCCEEEEeCCCC-CcHHHHHHhCCCC--cEEEEEEEEEEEecCCceEEecCCCc-eE
Confidence 99999987 67888999999998999999997764 3444555554332 23333 2 233332222 333 22
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH--------------------HhHHHHHH
Q 011501 145 PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD--------------------MQLIAEAY 204 (484)
Q Consensus 145 ~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~--------------------~~~~~Ea~ 204 (484)
.+ +.+.++++.++|+..+.+ +.+.++.+.+.+.|++.|.+.... ..++.|++
T Consensus 152 ~~-~~~~~~~~~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~ 223 (341)
T PRK08229 152 IE-ASPALRPFAAAFARAGLP-------LVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREAL 223 (341)
T ss_pred ec-CCchHHHHHHHHHhcCCC-------ceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHH
Confidence 22 235568899999987765 488899999999999999643333 37899999
Q ss_pred HHHHHhCCCCHHHHHHHHHhhccC--cchhhhhhhhccccccccCCCCchhHHHhhhhcCCC-------CchHHHHHHHH
Q 011501 205 DVLKSVGKLSNEELQQVFSEWNKG--ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMK-------GTGKWTVQQAA 275 (484)
Q Consensus 205 ~l~~~~g~~~~~~i~~~~~~~~~g--~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k-------~tg~~~~~~A~ 275 (484)
.++++.| ++++.+.++...+... .+.+++++...+.+...+ +... ..+++|+... =.| +.++.|+
T Consensus 224 ~va~a~G-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~Sm~~D~~~~r~tEi~~i~G-~i~~~a~ 297 (341)
T PRK08229 224 RVLKAAG-IRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAID-PLAR---SSMSDDLAAGRATEIDWING-EIVRLAG 297 (341)
T ss_pred HHHHHcC-CCccccCCCChhhhhhhhcCChHHHHHHHHHhhccC-CccC---chHHHHHHcCCcchHHHHhh-HHHHHHH
Confidence 9999999 9876543332211100 112333332222111111 1111 1122221100 012 6889999
Q ss_pred HcCCCcchHHHHHHHHH
Q 011501 276 DLSVAAPTIESSLDARF 292 (484)
Q Consensus 276 ~~gvp~p~~~~av~~r~ 292 (484)
++|+|+|..... +..+
T Consensus 298 ~~gv~~P~~~~~-~~~~ 313 (341)
T PRK08229 298 RLGAPAPVNARL-CALV 313 (341)
T ss_pred HcCCCCcHHHHH-HHHH
Confidence 999999987654 4443
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=176.13 Aligned_cols=188 Identities=13% Similarity=0.154 Sum_probs=144.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|||||+|.||.+||.+|+.+||+|++||++++.++...+.. ...|.+ +++.+.+++++. .
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~~-~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADLA-D 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHhC-C
Confidence 5799999999999999999999999999999999887742211 111100 367778887654 4
Q ss_pred cCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEE-EecCCCChHHHHHHHHHHH--H--cCCeEEe-ccCCCCHHhhhc
Q 011501 67 IQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCI-IDGGNEWYENTERRQKAVA--E--LGLLYLG-MGVSGGEEGARY 139 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~--~--~g~~~i~-~pv~gg~~~a~~ 139 (484)
+|+||.|||++.++++.+ .++...++++.++ .++||.++. ++++.+. + .|+||++ +|++.
T Consensus 87 ---aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~------- 153 (507)
T PRK08268 87 ---CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMK------- 153 (507)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCe-------
Confidence 999999999999998776 5676777788888 488888774 3444433 2 3899999 77772
Q ss_pred CCccccC---CCHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 140 GPSLMPG---GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 140 g~~i~~g---g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
...+++ +++++++.+.++++.+++.+ +++++ +| ++.|.+.. ..++|++.++++.+ +++
T Consensus 154 -LvEvv~g~~Ts~~~~~~~~~l~~~lgk~p-------v~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~-~~~ 215 (507)
T PRK08268 154 -LVEVVSGLATDPAVADALYALARAWGKTP-------VRAKDTPG------FIVNRAAR---PYYTEALRVLEEGV-ADP 215 (507)
T ss_pred -eEEEeCCCCCCHHHHHHHHHHHHHcCCce-------EEecCCCC------hHHHHHHH---HHHHHHHHHHHcCC-CCH
Confidence 244555 48999999999999999764 88886 45 46666654 47799999999988 999
Q ss_pred HHHHHHHH
Q 011501 216 EELQQVFS 223 (484)
Q Consensus 216 ~~i~~~~~ 223 (484)
+++.+++.
T Consensus 216 ~~iD~al~ 223 (507)
T PRK08268 216 ATIDAILR 223 (507)
T ss_pred HHHHHHHH
Confidence 99999984
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-17 Score=163.91 Aligned_cols=176 Identities=18% Similarity=0.265 Sum_probs=133.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||.++|..|.++|++|++||++++..+.+.+.+. +....+..+.++. +|+||+|+|.. .+
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~------~~~~~~~~~~~~~---aDlVilavp~~-~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL------VDEASTDLSLLKD---CDLVILALPIG-LL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC------cccccCCHhHhcC---CCEEEEcCCHH-HH
Confidence 48999999999999999999999999999999998887765432 2222233344554 99999999987 67
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCH-HhhhcCC-cccc----------CCCHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGE-EGARYGP-SLMP----------GGSFE 150 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~-~~a~~g~-~i~~----------gg~~~ 150 (484)
.++++++.+.+.++.+|+|+++..+....... +....|++ .|+.|++ .+...+. .++. +++++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~----~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~ 146 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEAWE----KLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLN 146 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHHHH----HhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHH
Confidence 78889999999899999999998765443332 22335887 6999886 4444333 2222 35889
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLI 200 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~ 200 (484)
.++.++++++.+|.+ ++++++.+....++++.+...+...+++
T Consensus 147 ~~~~v~~l~~~lG~~-------~v~~~~~~hD~~~a~~shlp~~~a~~l~ 189 (279)
T PRK07417 147 ALAIVEELAVSLGSK-------IYTADPEEHDRAVALISHLPVMVSAALI 189 (279)
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999976 4889999999999999887766554443
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=159.24 Aligned_cols=198 Identities=32% Similarity=0.514 Sum_probs=141.4
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcC
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g 140 (484)
+++...|+.-|+||=-=.+ .-++.++.-.....+|--++|++|+--..- .++|..| +.||++.+...
T Consensus 78 ~~la~~L~~GDivIDGGNS--~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G-------~~~G~~l----MiGG~~~a~~~ 144 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNS--NYKDSLRRAKLLAEKGIHFLDVGTSGGVWG-------AERGYCL----MIGGDEEAVER 144 (300)
T ss_pred HHHHhhcCCCCEEEECCcc--chHHHHHHHHHHHhcCCeEEeccCCCCchh-------hhcCceE----EecCcHHHHHH
Confidence 3444455667888766433 455666554445567888999998852211 2345544 34555544332
Q ss_pred C-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 141 P-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 141 ~-~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
. .+ ++.+.+ ..-| ..|+||.|+|||+|||||+|+|++|++++|.+.++++.- .|.+ +.
T Consensus 145 ~~pi--------f~~lA~--ge~G---------yl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~-fD~D-~~ 203 (300)
T COG1023 145 LEPI--------FKALAP--GEDG---------YLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSP-FDYD-LE 203 (300)
T ss_pred HHHH--------HHhhCc--CcCc---------cccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCC-CCCC-HH
Confidence 2 21 111111 0234 379999999999999999999999999999999999876 6532 33
Q ss_pred HHHHhhccC-cchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCch
Q 011501 220 QVFSEWNKG-ELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKE 298 (484)
Q Consensus 220 ~~~~~~~~g-~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~ 298 (484)
++-+.||.| ...||+++.+...+++. .-++.+.+.+...|+|+||+++|.++|+|+|+++.|++.||.|...+
T Consensus 204 ~VA~vW~hGSVIrSWLldLt~~Af~~d------~~L~q~~g~v~dSGEGrWTv~~aldlgvpaPVia~al~~Rf~S~~~d 277 (300)
T COG1023 204 AVAEVWNHGSVIRSWLLDLTAEAFKKD------PDLDQISGRVSDSGEGRWTVEEALDLGVPAPVIALALMMRFRSRQDD 277 (300)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHhhC------CCHHHhcCeeccCCCceeehHHHHhcCCCchHHHHHHHHHHhccchh
Confidence 344458885 46799999998877642 25788989998999999999999999999999999999999997553
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=172.20 Aligned_cols=189 Identities=17% Similarity=0.207 Sum_probs=140.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
.++|||||+|.||.+||.+|+++||+|++||++++.++...+. ....|.. +++.+++++++.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l~- 83 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHALA- 83 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHhC-
Confidence 4689999999999999999999999999999999987754221 1111100 356777887653
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEE-ecCCCChHHHHHHHHHHH----HcCCeEEe-ccCCCCHHhhh
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCII-DGGNEWYENTERRQKAVA----ELGLLYLG-MGVSGGEEGAR 138 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~----~~g~~~i~-~pv~gg~~~a~ 138 (484)
. +|+||.|||++.++++.+ .++...++++.+|. ++|+..+ + ++++.+. ..|.||++ +|++.
T Consensus 84 ~---aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i--~-~iA~~~~~p~r~~G~HFf~Papv~~------ 151 (503)
T TIGR02279 84 D---AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI--T-AIAAGLARPERVAGLHFFNPAPVMA------ 151 (503)
T ss_pred C---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH--H-HHHHhcCcccceEEEeccCccccCc------
Confidence 4 999999999998888775 55666665555544 3444443 2 3344442 35899999 67763
Q ss_pred cCCccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 139 YGPSLMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 139 ~g~~i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
...+++| ++++++.+.++++.+++.+ +++|+ +| ++.|.+. .++++|++.++++.+ .+
T Consensus 152 --LvEvv~g~~Ts~e~~~~~~~l~~~lgk~p-------v~v~d~pG------fi~Nrl~---~~~~~EA~~l~e~g~-a~ 212 (503)
T TIGR02279 152 --LVEVVSGLATAAEVAEQLYETALAWGKQP-------VHCHSTPG------FIVNRVA---RPYYAEALRALEEQV-AA 212 (503)
T ss_pred --eEEEeCCCCCCHHHHHHHHHHHHHcCCee-------eEeCCCCC------cHHHHHH---HHHHHHHHHHHHcCC-CC
Confidence 2457777 8999999999999999764 88886 45 2556555 357899999999988 99
Q ss_pred HHHHHHHHH
Q 011501 215 NEELQQVFS 223 (484)
Q Consensus 215 ~~~i~~~~~ 223 (484)
++++.++++
T Consensus 213 ~~~ID~al~ 221 (503)
T TIGR02279 213 PAVLDAALR 221 (503)
T ss_pred HHHHHHHHH
Confidence 999999985
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=156.03 Aligned_cols=190 Identities=16% Similarity=0.210 Sum_probs=140.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|+|+|||+|.||.+||.+|.++|+ +|++|||++++.+.+.+.+. ...+.+++++. . +|+||+|||..
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~------~~~~~~~~~~~-~---aD~Vilavp~~- 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGL------VDEIVSFEELK-K---CDVIFLAIPVD- 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCC------CcccCCHHHHh-c---CCEEEEeCcHH-
Confidence 489999999999999999999996 78999999998877654331 12345666654 3 99999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCC----HHhhh----cCC-ccccC---CC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGG----EEGAR----YGP-SLMPG---GS 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg----~~~a~----~g~-~i~~g---g~ 148 (484)
.+.+++.++.+ +.++++|+|++++.......+.+. .+..|+++ |++|+ +..+. .|. .++++ ++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~ 145 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSG 145 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCC
Confidence 67888899999 889999999988765444333222 23568887 99875 44332 455 45543 47
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
++.++.++++|+.+|.+ ++++++.+....++++++.-. ....+++++.. .+ .+.+.+.++
T Consensus 146 ~~~~~~v~~l~~~~G~~-------~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~-~~~~~~~~~ 205 (275)
T PRK08507 146 EKHQERAKEIFSGLGMR-------IVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KE-EDERNIFDL 205 (275)
T ss_pred HHHHHHHHHHHHHhCCE-------EEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hc-CChHHHHhh
Confidence 78899999999999977 489999999999999999753 44444455541 24 666655444
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=154.90 Aligned_cols=195 Identities=18% Similarity=0.170 Sum_probs=142.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~~ 65 (484)
+.+|||||+|.||.+||.+++.+|++|++||++++.++...+. ....+.. +++.++++++ ++
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~ 83 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD-FA 83 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH-hC
Confidence 3589999999999999999999999999999999987763321 1111000 3556777744 45
Q ss_pred hcCCCcEEEEecCCCchHHHHH-HHHhhhc-CCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEe-ccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTI-KTLSVYM-EKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLG-MGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl-~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~-~pv~gg~~~a~~g 140 (484)
. +|+||.|+|++.+++..+ ..+...+ +++.+++..|++.|..........+++ |.||++ +|+++..+-
T Consensus 84 ~---~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvEl---- 156 (286)
T PRK07819 84 D---RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVEL---- 156 (286)
T ss_pred C---CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEE----
Confidence 4 999999999999888776 5555555 789999998888877665554444445 788888 466655431
Q ss_pred CccccCCCHHHHHHHHHHHH-HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 141 PSLMPGGSFEAYKHIEDILL-KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 141 ~~i~~gg~~~~~~~v~~ll~-~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
....++++++++.+.+++. .+++.+ +.+++ ..| ++.|.+. ..+++|++.++++.. .+++++.
T Consensus 157 -v~~~~T~~~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----fi~nRi~---~~~~~Ea~~ll~eGv-~~~~dID 219 (286)
T PRK07819 157 -VPTLVTSEATVARAEEFASDVLGKQV-------VRAQD-RSG----FVVNALL---VPYLLSAIRMVESGF-ATAEDID 219 (286)
T ss_pred -eCCCCCCHHHHHHHHHHHHHhCCCCc-------eEecC-CCC----hHHHHHH---HHHHHHHHHHHHhCC-CCHHHHH
Confidence 2345679999999999988 588764 66765 334 3445543 455699999998765 7899998
Q ss_pred HHH
Q 011501 220 QVF 222 (484)
Q Consensus 220 ~~~ 222 (484)
.++
T Consensus 220 ~~~ 222 (286)
T PRK07819 220 KAM 222 (286)
T ss_pred HHH
Confidence 886
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.3e-17 Score=162.94 Aligned_cols=294 Identities=9% Similarity=0.007 Sum_probs=190.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHHhhhcC---CC----CeeecCCHhHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKQEG---NL----PLYGFHDPESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~~---~~----~~~~~~s~~e~ 63 (484)
.+||+|||.|.||+++|..|+++| ++|.+|.|+++ .++.+.+.+.+.. +. ++..+++++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 468999999999999999999998 89999999986 3555554433221 00 46677888888
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhh--hcCCCCEEEecCCCChHHH---HHHHHHHHH---cCCeEEeccCCCCHH
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSV--YMEKGDCIIDGGNEWYENT---ERRQKAVAE---LGLLYLGMGVSGGEE 135 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~--~l~~g~iiId~st~~~~~~---~~~~~~l~~---~g~~~i~~pv~gg~~ 135 (484)
++. +|+||++||+. .++++++++.+ .+.++.++|.++.+....+ ..+.+.+.+ ..+.++..|-+. .+
T Consensus 91 v~~---aDiIvlAVPsq-~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A-~E 165 (365)
T PTZ00345 91 VED---ADLLIFVIPHQ-FLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVA-ND 165 (365)
T ss_pred Hhc---CCEEEEEcChH-HHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHH-HH
Confidence 887 99999999986 89999999998 7877778888766553322 122333322 233444555333 33
Q ss_pred hhhcCC-c-cccCCCHHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHH
Q 011501 136 GARYGP-S-LMPGGSFEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAE 202 (484)
Q Consensus 136 ~a~~g~-~-i~~gg~~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~E 202 (484)
-++.-| . ++++-+.+..+.++.+|.. +|.++....|+++-++. |....+++-.|.-.+.+...+.|
T Consensus 166 va~~~pt~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~-Gi~dGl~~G~N~kaalitrgl~E 244 (365)
T PTZ00345 166 VAREEFSEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAA-GFCDGLGLGTNTKSAIIRIGLEE 244 (365)
T ss_pred HHcCCCcEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCChhHHHHHHHHHHHH
Confidence 444445 3 4555688888888888853 22222122255555543 55666678899999999999999
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCC---chhHHHhhhhc--CCCCchHHHH----H
Q 011501 203 AYDVLKSVG-KLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGD---GYLVDKVLDKT--GMKGTGKWTV----Q 272 (484)
Q Consensus 203 a~~l~~~~g-~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~---~~~l~~i~~~~--~~k~tg~~~~----~ 272 (484)
+..++++.| |.+++++..+ .|.++-.+.-..++..+.+..+.. +..++.+.+.+ +|+.+|..++ +
T Consensus 245 m~~l~~a~g~~~~~~T~~gl-----aG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~ 319 (365)
T PTZ00345 245 MKLFGKIFFPNVMDETFFES-----CGLADLITTCLGGRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYE 319 (365)
T ss_pred HHHHHHHhCCCCCccchhcc-----chHhHhhhcccCCCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHH
Confidence 999999997 2577777554 232231111111111111111111 13566666665 7888998887 5
Q ss_pred HHHHcCC--CcchHHHHHHHHHHhcCchHHHHHHHhccC
Q 011501 273 QAADLSV--AAPTIESSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 273 ~A~~~gv--p~p~~~~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
.++++++ ++|++. +|++-+... ++....+..++..
T Consensus 320 l~~~~~i~~~~Pi~~-~vy~il~~~-~~~~~~~~~l~~r 356 (365)
T PTZ00345 320 VLESHDLKKEFPLFT-VTYKIAFEG-ADPSSLIDVLSTN 356 (365)
T ss_pred HHHHcCCCCCCCHHH-HHHHHHhCC-CCHHHHHHHHHcC
Confidence 6889999 899876 455555444 4445555655543
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.4e-16 Score=155.01 Aligned_cols=192 Identities=15% Similarity=0.216 Sum_probs=135.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC----------CCeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN----------LPLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~----------~~~~~~~s~~e~ 63 (484)
|+.++|+|||+|.||.+||.+|+++|++|++||++++.++.+.+... ..+. .+++.++++++
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~- 80 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLED- 80 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence 34578999999999999999999999999999999998776543210 0000 02455667654
Q ss_pred HhhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEE-ecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCHHh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCII-DGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGEEG 136 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~~~ 136 (484)
++. +|+||+|+|++.+++ .++.++.+.++++.+|+ ++|+..+. ++++.+.. .|+||++ +|++++.+
T Consensus 81 ~~~---aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~ve- 153 (292)
T PRK07530 81 LAD---CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVE- 153 (292)
T ss_pred hcC---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEE-
Confidence 444 999999999986654 55688888888898887 55555432 45554431 2678887 45443322
Q ss_pred hhcCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 137 ARYGPSLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 137 a~~g~~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
++ .+++++.++.+.++++.+|..+ +++++.+ -+++++.+ ..+++|++.+..+.- .+
T Consensus 154 ------i~~g~~t~~~~~~~~~~~~~~~gk~~-------v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~-~~ 211 (292)
T PRK07530 154 ------LIRGIATDEATFEAAKEFVTKLGKTI-------TVAEDFP----AFIVNRIL----LPMINEAIYTLYEGV-GS 211 (292)
T ss_pred ------EeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCcC----ChHHHHHH----HHHHHHHHHHHHhCC-CC
Confidence 33 4689999999999999999764 7777633 23444433 356789999998754 58
Q ss_pred HHHHHHHH
Q 011501 215 NEELQQVF 222 (484)
Q Consensus 215 ~~~i~~~~ 222 (484)
++++..++
T Consensus 212 ~~~iD~~~ 219 (292)
T PRK07530 212 VEAIDTAM 219 (292)
T ss_pred HHHHHHHH
Confidence 99998886
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.5e-16 Score=153.98 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=135.9
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc-C-----C------CCeeecCCHhHHHhhc
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE-G-----N------LPLYGFHDPESFVHSI 67 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~-~-----~------~~~~~~~s~~e~~~~l 67 (484)
|+ +++|+|||+|.||.+||..|+++|++|++||+++++++.+.+..... + + -++..+++++++++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~- 79 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSG- 79 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhcc-
Confidence 54 36899999999999999999999999999999999887766521000 0 0 013456677777766
Q ss_pred CCCcEEEEecCCCch-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCCc
Q 011501 68 QKPRVIIMLVKAGSP-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGPS 142 (484)
Q Consensus 68 ~~advIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~~ 142 (484)
+|+||+|||+..+ ...++.++.+.++++.+|+..+ +... ..++.+.+... |++|.++|..+ ....
T Consensus 80 --aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~t-sg~~-~~~l~~~~~~~~~~ig~h~~~p~~~~------~l~~ 149 (311)
T PRK06130 80 --ADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNT-SGLP-ITAIAQAVTRPERFVGTHFFTPADVI------PLVE 149 (311)
T ss_pred --CCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECC-CCCC-HHHHHhhcCCcccEEEEccCCCCccC------ceEE
Confidence 9999999998754 4567778877776665554333 3333 33555554321 34444333221 1113
Q ss_pred cccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 143 LMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 143 i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++.|. +++.++.++++|+.+|.. ++++++...|. +++|.+ ..+++|++.++++.| ++++++.+
T Consensus 150 i~~g~~t~~~~~~~v~~l~~~~G~~-------~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~-~~~~~id~ 214 (311)
T PRK06130 150 VVRGDKTSPQTVATTMALLRSIGKR-------PVLVKKDIPGF---IANRIQ----HALAREAISLLEKGV-ASAEDIDE 214 (311)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCE-------EEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCC-CCHHHHHH
Confidence 44443 789999999999999975 47887655554 566653 367899999999988 99999999
Q ss_pred HHH
Q 011501 221 VFS 223 (484)
Q Consensus 221 ~~~ 223 (484)
++.
T Consensus 215 ~~~ 217 (311)
T PRK06130 215 VVK 217 (311)
T ss_pred HHH
Confidence 873
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=159.77 Aligned_cols=293 Identities=12% Similarity=0.070 Sum_probs=186.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC----CC----CeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG----NL----PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~----~~----~~~~~~s~~e~~~~l~~advIi 74 (484)
+|||+|||+|.||..+|..|+++| .|.+|.|+++..+.+.+.+.+.. +. ++...+++++.++. +|+||
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~---aDlVi 82 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANC---ADVVV 82 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhc---CCEEE
Confidence 468999999999999999999999 68999999999888876432110 00 23456677776666 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHHH----cCCeEEeccCCCCHHhhhcCC-ccc-cCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVAE----LGLLYLGMGVSGGEEGARYGP-SLM-PGG 147 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~~----~g~~~i~~pv~gg~~~a~~g~-~i~-~gg 147 (484)
++||.. .++++++++.+.+.++.++|.++++....+.+ +.+.+.+ ..+..+..|-.-. +.+..-+ .++ .+.
T Consensus 83 lavps~-~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~-ev~~g~~t~~via~~ 160 (341)
T PRK12439 83 MGVPSH-GFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAR-EVAEGYAAAAVLAMP 160 (341)
T ss_pred EEeCHH-HHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHH-HHHcCCCeEEEEEeC
Confidence 999986 89999999999998888888888776543222 2222222 1222344442211 1122223 333 344
Q ss_pred CHHHHHHHHHHHHHHhccC--C---------CCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 148 SFEAYKHIEDILLKVAAQV--P---------DSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~--~---------~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
+++..+.++.+|+.-+-++ . ...++++.++ .|....+.+..|.....+...+.|+..++++.| .+++
T Consensus 161 ~~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia-~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G-~~~~ 238 (341)
T PRK12439 161 DQHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIA-VGMGYSLGIGENTRAMVIARALREMTKLGVAMG-GNPE 238 (341)
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHH-HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 6677777888875433221 0 0013333333 344444556667776777899999999999998 8888
Q ss_pred HHHHHHHhhccCcch--hhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHH----HHHHHcCCCcchHHHHHHH
Q 011501 217 ELQQVFSEWNKGELL--SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIESSLDA 290 (484)
Q Consensus 217 ~i~~~~~~~~~g~~~--s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~----~~A~~~gvp~p~~~~av~~ 290 (484)
.+..+ .|.++ -......++..+.+..+..+..++.+.+.++++.+|..++ +.++++++.+|++.+ |+
T Consensus 239 t~~gl-----~G~GDl~~Tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~-~~- 311 (341)
T PRK12439 239 TFAGL-----AGMGDLIVTCTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIARE-VD- 311 (341)
T ss_pred ccccc-----chhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHH-HH-
Confidence 77553 22222 1122211222221112334456777777788888897766 468899999998774 44
Q ss_pred HHHhcCchHHHHHHHhccCC
Q 011501 291 RFLSGLKEERVEAAKVFRSS 310 (484)
Q Consensus 291 r~~s~~~~~r~~~~~~~~~~ 310 (484)
+.+...++.+..++.++..+
T Consensus 312 ~il~~~~~~~~~~~~l~~~~ 331 (341)
T PRK12439 312 AVINHGSTVEQAYRGLIAEV 331 (341)
T ss_pred HHHhCCCCHHHHHHHHhcCC
Confidence 45555556777777777544
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-17 Score=172.67 Aligned_cols=118 Identities=19% Similarity=0.298 Sum_probs=100.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHcCCCccchhhHHHHHHHHccCCCCC-Cc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE---LTRIWKGGCIIRAIFLDRIKKAYDRNPDLA-NV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~---i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~-~l 396 (484)
.++|||+||+||+|+|++||+++|+|.|+++.. + +|..+ +++.|+.| .++|+++++..++|+++++.. ..
T Consensus 175 ~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~---g--l~~~~l~~v~~~w~~g-~~~S~l~ei~~~~~~~~d~~~~~~ 248 (470)
T PTZ00142 175 GSSGHYVKMVHNGIEYGDMQLISESYKLMKHIL---G--MSNEELSEVFNKWNEG-ILNSYLIEITAKILAKKDDLGEEH 248 (470)
T ss_pred CCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhc---C--CCHHHHHHHHHHHcCC-CccCHHHHHHHHHhhcccccCCCc
Confidence 489999999999999999999999999998522 3 66544 56669998 589999999999998765432 58
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
++|.+.+...+|++| ||+|++|+++|+|+|+|++||+ ++++++..|..
T Consensus 249 ~l~~i~d~~~~~gtg--~wt~~~a~~~~v~~p~i~~a~~~R~~S~~k~~r~~ 298 (470)
T PTZ00142 249 LVDKILDIAGSKGTG--KWTVQEALERGIPVPTMAASVDARNISALKEERTK 298 (470)
T ss_pred chhhhcCcccCCchH--HhHHHHHHHcCCCchHHHHHHHHHHhhhhHHHHHH
Confidence 889999999999999 9999999999999999999997 77777776654
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.2e-16 Score=159.17 Aligned_cols=278 Identities=10% Similarity=0.026 Sum_probs=180.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCC--------CcEEEEeC-----ChhHHHHHHHHhhhcC---CC----CeeecCCHhHHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKG--------FPISVYNR-----TTSKVDETVERAKQEG---NL----PLYGFHDPESFV 64 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G--------~~V~v~dr-----~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~ 64 (484)
||+|||.|.||++||..|+++| ++|.+|.| +++..+.+.....+.. ++ +++.++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 5454555444322210 11 356778888888
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH--HH-HHHHHHHH---cCCeEEeccCCCCHHhhh
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN--TE-RRQKAVAE---LGLLYLGMGVSGGEEGAR 138 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~--~~-~~~~~l~~---~g~~~i~~pv~gg~~~a~ 138 (484)
+. +|+||++||+. .++++++++.++++++.++|.++.+.... +. .+.+.+++ ..+.++..|-+.. +-++
T Consensus 81 ~~---ADiIIlAVPs~-~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~-Eva~ 155 (342)
T TIGR03376 81 KG---ADILVFVIPHQ-FLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLAN-EVAK 155 (342)
T ss_pred hc---CCEEEEECChH-HHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHH-HHHc
Confidence 87 99999999986 89999999999998888999987765443 32 22333322 2333444554432 3344
Q ss_pred cCC-cc-ccCCC----HHHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 139 YGP-SL-MPGGS----FEAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 139 ~g~-~i-~~gg~----~~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
.-| .+ +.+.+ .+..+.++.+|.. +|.++....|+++-++. |....+.+-.|.-.+.+...+.
T Consensus 156 ~~pt~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~-Gi~~Gl~~g~N~~aalitrgl~ 234 (342)
T TIGR03376 156 EKFSETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAA-GFVDGLGWGDNAKAAVMRRGLL 234 (342)
T ss_pred CCCceEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHH-HHHHhcCCCHHHHHHHHHHHHH
Confidence 445 44 44556 7888888888853 12111122255555543 5556667788999999999999
Q ss_pred HHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhhhhhccccccccCCCC-chhHHHhhhh--cCCCCchHHHHH----
Q 011501 202 EAYDVLKSVGKLSNE--ELQQVFSEWNKGELLSFLIEITADIFGIKDDKGD-GYLVDKVLDK--TGMKGTGKWTVQ---- 272 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~-~~~l~~i~~~--~~~k~tg~~~~~---- 272 (484)
|+..+++..| -+++ .+... .|.++-.+.-..++..+.+..+.. +..++.+.+. .+++.+|..++.
T Consensus 235 Em~~l~~~~g-~~~~~~T~~gl-----~G~GDL~~Tc~ssRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~ 308 (342)
T TIGR03376 235 EMIKFARMFF-PTGEVTFTFES-----CGVADLITTCLGGRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHE 308 (342)
T ss_pred HHHHHHHHhC-CCCCCCccccc-----chhhhhhheeecCccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHH
Confidence 9999999999 5655 55432 222221111111111111111233 4566777777 778899987775
Q ss_pred HHHHcCCC--cchHHHHHHHHHHhc
Q 011501 273 QAADLSVA--APTIESSLDARFLSG 295 (484)
Q Consensus 273 ~A~~~gvp--~p~~~~av~~r~~s~ 295 (484)
.++++++. +|++.+ |++-+...
T Consensus 309 l~~~~~i~~~~Pi~~~-vy~il~~~ 332 (342)
T TIGR03376 309 LLKNKNKDDEFPLFEA-VYQILYEG 332 (342)
T ss_pred HHHHcCCCcCCCHHHH-HHHHHhCC
Confidence 47889999 998764 55555444
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.2e-15 Score=156.31 Aligned_cols=194 Identities=18% Similarity=0.206 Sum_probs=144.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|+||| +|.||.++|..|.++|++|.+|||++++..++.... ++....++++.+.. +|+||+|+|.. .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~------gv~~~~~~~e~~~~---aDvVIlavp~~-~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL------GVEYANDNIDAAKD---ADIVIISVPIN-V 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc------CCeeccCHHHHhcc---CCEEEEecCHH-H
Confidence 4899997 899999999999999999999999988765554432 24556677777776 99999999986 7
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC-ccccC---CCHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP-SLMPG---GSFEAYKHIED 157 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~-~i~~g---g~~~~~~~v~~ 157 (484)
+.++++++.+.++++.+|+|++++.......+.+.+ ..+..|+++ |++|.......|. .++.. .+++.++.+++
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ 149 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKN 149 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHH
Confidence 789999999999999999999998876666655543 357889987 8887655556676 44443 36788999999
Q ss_pred HHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 158 ILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
+|+.+|.++ +++++.. --+++.+.....++..++.+..+ .+.| ++.++...
T Consensus 150 ll~~~G~~v-------~~~~~e~---HD~~~a~vs~lph~~a~al~~~l-~~~g-~~~~~~~~ 200 (437)
T PRK08655 150 FLEKEGARV-------IVTSPEE---HDRIMSVVQGLTHFAYISIASTL-KRLG-VDIKESRK 200 (437)
T ss_pred HHHHcCCEE-------EECCHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHcC-CCHHHHHh
Confidence 999999763 6776643 23444444444445555555544 5567 88776543
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=150.68 Aligned_cols=195 Identities=12% Similarity=0.056 Sum_probs=137.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcC------CCCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEG------NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~------~~~~~~~~s~~e~~~~l~~ 69 (484)
..+|||||+|.||.+||.+++.+|++|.+||++++..+.+.+... +.+ ..+++.++++++.++.
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~--- 83 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVAD--- 83 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcC---
Confidence 468999999999999999999999999999999987665433110 000 0035667788887776
Q ss_pred CcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCCccc
Q 011501 70 PRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGPSLM 144 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~~i~ 144 (484)
||+|+.++|...+++..+ .++...++++. ||.+||+.. ...++.+.+... |.||+..|-.-.-. =++
T Consensus 84 aDlViEavpE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l-~~s~la~~~~~p~R~~g~HffnP~~~~pLV------EVv 155 (321)
T PRK07066 84 ADFIQESAPEREALKLELHERISRAAKPDA-IIASSTSGL-LPTDFYARATHPERCVVGHPFNPVYLLPLV------EVL 155 (321)
T ss_pred CCEEEECCcCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc-CHHHHHHhcCCcccEEEEecCCccccCceE------EEe
Confidence 999999999998888655 77888887766 667776643 444555555322 45555443211100 144
Q ss_pred cC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHH
Q 011501 145 PG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVF 222 (484)
Q Consensus 145 ~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 222 (484)
.| .++++++.+..+++.+|+++ +.+...-.| ++.|.+.. ++++|++.+..+.. .+++++..++
T Consensus 156 ~g~~T~~e~~~~~~~f~~~lGk~p-------V~v~kd~pG----Fi~NRl~~---a~~~EA~~lv~eGv-as~edID~a~ 220 (321)
T PRK07066 156 GGERTAPEAVDAAMGIYRALGMRP-------LHVRKEVPG----FIADRLLE---ALWREALHLVNEGV-ATTGEIDDAI 220 (321)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEe-------EecCCCCcc----HHHHHHHH---HHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 44 37999999999999999764 666444444 45566654 45599999999877 8999999987
Q ss_pred H
Q 011501 223 S 223 (484)
Q Consensus 223 ~ 223 (484)
.
T Consensus 221 ~ 221 (321)
T PRK07066 221 R 221 (321)
T ss_pred H
Confidence 3
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-15 Score=150.11 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=138.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh----------hcCCC----------CeeecCCH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------QEGNL----------PLYGFHDP 60 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~----------~~~~~----------~~~~~~s~ 60 (484)
|...+|+|||+|.||.++|..|+.+|++|++||++++.++...+... ..+.. ++...++.
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~ 80 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH
Confidence 55578999999999999999999999999999999998765432110 00000 12344444
Q ss_pred hHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCH
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGE 134 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~ 134 (484)
+.++. +|+||+|+|++..+ ..++.++.+.++++.+|+..+++. ...++++.+.. .|.||+. +|++++.
T Consensus 81 -~~~~~---aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~v 154 (291)
T PRK06035 81 -ESLSD---ADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLI 154 (291)
T ss_pred -HHhCC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccE
Confidence 34444 99999999998654 456678888888888877555543 34455555533 2778887 5666664
Q ss_pred HhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 135 EGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 135 ~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
+ ...|+. .++++++.+.++++.++..+ +++++.+.....|+++| +++|++.+.+..- .+
T Consensus 155 E-v~~g~~----T~~e~~~~~~~~~~~lgk~~-------v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~-a~ 213 (291)
T PRK06035 155 E-VVRAAL----TSEETFNTTVELSKKIGKIP-------IEVADVPGFFTTRFIEG--------WLLEAIRSFEIGI-AT 213 (291)
T ss_pred E-EeCCCC----CCHHHHHHHHHHHHHcCCeE-------EEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCC-CC
Confidence 4 234431 28999999999999999764 88887666666677665 4579999988754 68
Q ss_pred HHHHHHHH
Q 011501 215 NEELQQVF 222 (484)
Q Consensus 215 ~~~i~~~~ 222 (484)
++++..++
T Consensus 214 ~~~iD~~~ 221 (291)
T PRK06035 214 IKDIDEMC 221 (291)
T ss_pred HHHHHHHH
Confidence 99998886
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-15 Score=151.16 Aligned_cols=194 Identities=13% Similarity=0.183 Sum_probs=134.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCC---------C-CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGN---------L-PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~---------~-~~~~~~s~~e~~~ 65 (484)
+++|||||+|.||.+||.+|+.+|++|++||+++++++...+. ....+. + .+...++. +.++
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR 82 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence 4689999999999999999999999999999999887543211 000000 0 13344444 4455
Q ss_pred hcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEE-ecCCCChHHHHHHHHH-HHHcCCeEEeccCCCCHHhhhcCCc
Q 011501 66 SIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCII-DGGNEWYENTERRQKA-VAELGLLYLGMGVSGGEEGARYGPS 142 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~-l~~~g~~~i~~pv~gg~~~a~~g~~ 142 (484)
. +|+||+|||++.+++.. +.++.+.++++.+|+ ++|+..+....+.... ..-.|+||+++|..+.. .-
T Consensus 83 ~---aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~l------ve 153 (295)
T PLN02545 83 D---ADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKL------VE 153 (295)
T ss_pred C---CCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCce------EE
Confidence 5 99999999988777755 477888888888886 6777765543332221 11237788888865321 12
Q ss_pred ccc--CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 143 LMP--GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 143 i~~--gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++. +++++.++.++++|+.+|.. ++++++ ..| .+.|.+.. .+++|++.++++.. .+++++..
T Consensus 154 iv~g~~t~~e~~~~~~~ll~~lG~~-------~~~~~d-~~g----~i~nri~~---~~~~ea~~~~~~gv-~~~~~iD~ 217 (295)
T PLN02545 154 IIRGADTSDEVFDATKALAERFGKT-------VVCSQD-YPG----FIVNRILM---PMINEAFYALYTGV-ASKEDIDT 217 (295)
T ss_pred EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccc----HHHHHHHH---HHHHHHHHHHHcCC-CCHHHHHH
Confidence 332 35899999999999999965 367775 223 34555543 45799999999876 88999887
Q ss_pred HH
Q 011501 221 VF 222 (484)
Q Consensus 221 ~~ 222 (484)
++
T Consensus 218 ~~ 219 (295)
T PLN02545 218 GM 219 (295)
T ss_pred HH
Confidence 75
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=155.68 Aligned_cols=178 Identities=13% Similarity=0.151 Sum_probs=141.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+++|+||| +|.||.++|..|.++|++|.+||+++. .++++++.+ +|+||+|+|..
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~--------------------~~~~~~~~~---aDlVilavP~~- 153 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW--------------------DRAEDILAD---AGMVIVSVPIH- 153 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc--------------------hhHHHHHhc---CCEEEEeCcHH-
Confidence 36899998 999999999999999999999998631 134455665 99999999998
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcCC-ccccCC-CHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYGP-SLMPGG-SFEAYKHIEDI 158 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g~-~i~~gg-~~~~~~~v~~l 158 (484)
....+++++.+ +++|.+|+|+|++++.....+.+.+. ..|+ ..|++|++.....+. .++.++ ++++++.+.++
T Consensus 154 ~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l 229 (374)
T PRK11199 154 LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQ 229 (374)
T ss_pred HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHH
Confidence 57788888888 89999999999998666655554322 2588 569999877666666 555555 67889999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
++.+|++ ++++++.+....++++. .+ .++..++++..+++ .+ .+.+.+.+
T Consensus 230 ~~~lG~~-------v~~~~~~~HD~~~a~vs-hL--pH~~a~al~~~l~~-~~-~~~~~~~~ 279 (374)
T PRK11199 230 IQVWGAR-------LHRISAVEHDQNMAFIQ-AL--RHFATFAYGLHLAK-EN-VDLEQLLA 279 (374)
T ss_pred HHHCCCE-------EEECCHHHHHHHHHHHH-HH--HHHHHHHHHHHHHH-cC-CCHHHHHH
Confidence 9999987 49999999999999998 33 56667788888766 56 78776544
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.2e-17 Score=168.34 Aligned_cols=118 Identities=13% Similarity=0.253 Sum_probs=98.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCH---HHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL---GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~---~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
.|+|||+||+||+|+|++|++++|+|.|+++.. + +|. .++++.|+.| .++|++++...++|++++.....+
T Consensus 172 ~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~---g--~~~~~l~~v~~~w~~~-~~~S~l~~~~~~~~~~~d~~~~~~ 245 (467)
T TIGR00873 172 DGAGHYVKMVHNGIEYGDMQLICEAYDILKDGL---G--LSNEEIAEVFTEWNNG-ELDSYLIEITADILKKKDEDGKPL 245 (467)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-cccchHHHhHHHHHhccCCCCCcc
Confidence 489999999999999999999999999997532 3 544 5556668997 789999999999998854444688
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
+|.+.+...+++++ ||+|++|+++|+|+|+|++++. +.+..+..|..
T Consensus 246 l~~i~~~~~~~gtg--~wt~~~a~~~~v~~p~i~~av~~R~~S~~k~~r~~ 294 (467)
T TIGR00873 246 VDKILDTAGQKGTG--KWTAISALDLGVPVTLITESVFARYLSSLKEERVA 294 (467)
T ss_pred HHhhcCcccCccHH--HHHHHHHHHcCCCchHHHHHHHHHhccccHHHHHH
Confidence 89999999999999 9999999999999999999997 44445555543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-16 Score=166.49 Aligned_cols=118 Identities=14% Similarity=0.246 Sum_probs=98.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHH---HHHHHcCCCccchhhHHHHHHHHccCCC-CCCc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGE---LTRIWKGGCIIRAIFLDRIKKAYDRNPD-LANV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~---i~~iW~~Gcii~s~ll~~i~~~~~~~~~-~~~l 396 (484)
.|+|||+||+||+|+|++||+++|+|.++++.. + +|..+ +++.|+.| .++|+++++..+++.+++. ..+.
T Consensus 164 ~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~---G--l~~~~l~~v~~~wn~g-~~~S~l~ei~~~~l~~~d~~~~~~ 237 (459)
T PRK09287 164 DGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL---G--LSAEEIADVFAEWNKG-ELNSYLIEITADILRQKDEETGKP 237 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CccChHHHhHhHHHhcCCCCCCCc
Confidence 489999999999999999999999999998521 3 65544 56669999 5899999999999987442 3458
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
++|.+.+...+|++| ||++++|+++|+|+|+|++|++ +.+.++..|..
T Consensus 238 ~~d~i~d~~~~~gtg--~Wt~~~a~~~~v~~~~i~~AvfaR~~S~~k~~r~~ 287 (459)
T PRK09287 238 LVDVILDKAGQKGTG--KWTSQSALDLGVPLTLITEAVFARYLSSLKDQRVA 287 (459)
T ss_pred chHHhcCcccCCcHH--HHHHHHHHHhCCChHHHHHHHHHHhccccHHHHHH
Confidence 899999999999999 9999999999999999999997 55555655544
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.1e-14 Score=142.64 Aligned_cols=198 Identities=14% Similarity=0.216 Sum_probs=136.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC-----------CCeeecCCHhH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN-----------LPLYGFHDPES 62 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~-----------~~~~~~~s~~e 62 (484)
|.+++|+|||+|.||.++|..|+++|++|++||++++.++.+.+... ..+. .+++.++++++
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ 80 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAE 80 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHH
Confidence 55679999999999999999999999999999999987766543210 0000 03556778888
Q ss_pred HHhhcCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC
Q 011501 63 FVHSIQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP 141 (484)
Q Consensus 63 ~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~ 141 (484)
+++. +|+||.|+|+..++ ..+++++.+.++++.+|++.+++.+.. ++.+.+. +.-+|++...+..+ ...+
T Consensus 81 a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~--~~~~~~~-~~~r~vg~Hf~~p~---~~~~ 151 (287)
T PRK08293 81 AVKD---ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPS--QFAEATG-RPEKFLALHFANEI---WKNN 151 (287)
T ss_pred HhcC---CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHH--HHHhhcC-CcccEEEEcCCCCC---CcCC
Confidence 7776 99999999987544 466688888888888885544443222 2333332 23345554322221 1223
Q ss_pred --ccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 142 --SLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 142 --~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
-++ .+.++++++.+..+++.+++.+ +.+.+...|.. .|.+. ..+++|++.+..... .++++
T Consensus 152 lvevv~~~~t~~~~~~~~~~~~~~~Gk~p-------v~v~~d~pgfi----~nRi~---~~~~~ea~~l~~~g~-a~~~~ 216 (287)
T PRK08293 152 TAEIMGHPGTDPEVFDTVVAFAKAIGMVP-------IVLKKEQPGYI----LNSLL---VPFLSAALALWAKGV-ADPET 216 (287)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEecCCCCCHh----HHHHH---HHHHHHHHHHHHcCC-CCHHH
Confidence 234 3468999999999999999763 66765455544 44443 345699999998866 78999
Q ss_pred HHHHH
Q 011501 218 LQQVF 222 (484)
Q Consensus 218 i~~~~ 222 (484)
+..++
T Consensus 217 iD~a~ 221 (287)
T PRK08293 217 IDKTW 221 (287)
T ss_pred HHHHH
Confidence 98876
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=143.25 Aligned_cols=193 Identities=18% Similarity=0.261 Sum_probs=132.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-------HhhhcCCC----------CeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-------RAKQEGNL----------PLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-------~~~~~~~~----------~~~~~~s~~e~ 63 (484)
|++++|+|||+|.||.++|..|+++|++|++||+++++++...+ .....+.. +++.+++.++
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~- 79 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD- 79 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-
Confidence 66678999999999999999999999999999999998753221 11010000 2445666654
Q ss_pred HhhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEe-ccCCCCHHhh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLG-MGVSGGEEGA 137 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~-~pv~gg~~~a 137 (484)
++. +|+||+|+|+...++ +++.++.+.++++++|+..+++. ..+ .+.+.+.. .|.||.. +++..+.+
T Consensus 80 ~~~---aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~-~~~-~la~~~~~~~r~ig~h~~~P~~~~~~ve-- 152 (282)
T PRK05808 80 LKD---ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSL-SIT-ELAAATKRPDKVIGMHFFNPVPVMKLVE-- 152 (282)
T ss_pred hcc---CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC-CHH-HHHHhhCCCcceEEeeccCCcccCccEE--
Confidence 444 999999999876655 77788999888888774433332 233 55555532 2445554 23333322
Q ss_pred hcCCccc--cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 138 RYGPSLM--PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 138 ~~g~~i~--~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
++ .+.+++.++.+.++++.+|.. ++++++ ..| .+.|.+.+ .+++|++.+.++.- .++
T Consensus 153 -----v~~g~~t~~e~~~~~~~l~~~lGk~-------pv~~~d-~~g----~i~~Ri~~---~~~~ea~~~~~~gv-~~~ 211 (282)
T PRK05808 153 -----IIRGLATSDATHEAVEALAKKIGKT-------PVEVKN-APG----FVVNRILI---PMINEAIFVLAEGV-ATA 211 (282)
T ss_pred -----EeCCCCCCHHHHHHHHHHHHHcCCe-------eEEecC-ccC----hHHHHHHH---HHHHHHHHHHHhCC-CCH
Confidence 33 346899999999999999965 477764 444 44555443 55699999998866 789
Q ss_pred HHHHHHH
Q 011501 216 EELQQVF 222 (484)
Q Consensus 216 ~~i~~~~ 222 (484)
+++..++
T Consensus 212 ~diD~~~ 218 (282)
T PRK05808 212 EDIDEGM 218 (282)
T ss_pred HHHHHHH
Confidence 9998886
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-14 Score=141.60 Aligned_cols=254 Identities=17% Similarity=0.236 Sum_probs=159.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----CC--CCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----GN--LPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~~--~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||..+|..|+++|++|++|+| +++.+.+.+.+..- +. ......++.++.... +|+||+|+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~vilav 76 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGP---FDLVILAV 76 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCC---CCEEEEEe
Confidence 5899999999999999999999999999999 77777766532110 00 001123445554444 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC----C
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG----S 148 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg----~ 148 (484)
|.. +++++++.+.+.+.++++||...|.. .....+.+.+.+. |+.+++++..++..-...++ .+.+|. .
T Consensus 77 k~~-~~~~~~~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 77 KAY-QLDAAIPDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred ccc-CHHHHHHHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 987 78999999999888888888887764 2333444444332 34455555443221112233 444443 2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH---------------------HHHHhHHHHHHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVL 207 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~---------------------~~~~~~~~Ea~~l~ 207 (484)
.+..+.+..+|...+-. +....+.-...+.|++.|... .....++.|+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~ 227 (305)
T PRK12921 155 SERTRAVRDALAGARLE-------VVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVA 227 (305)
T ss_pred CHHHHHHHHHHHhCCCC-------ceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 34555566666655432 233444666778888877543 23456789999999
Q ss_pred HHhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHH
Q 011501 208 KSVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 285 (484)
Q Consensus 208 ~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~ 285 (484)
++.| ++ .+.+.+.+....... .....++..++...+. ..+|.+.. ..++.|+++|+|+|...
T Consensus 228 ~a~G-~~~~~~~~~~~~~~~~~~~-~~~~sSm~~D~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~ 291 (305)
T PRK12921 228 RAEG-APLRDDVVEEIVKIFAGAP-GDMKTSMLRDMEKGRP-----LEIDHLQG---------VLLRRARAHGIPTPILD 291 (305)
T ss_pred HHcC-CCCChhHHHHHHHHHhccC-CCCCcHHHHHHHcCCc-----ccHHHHHH---------HHHHHHHHhCCCCcHHH
Confidence 9998 76 334444433221111 1222334445544321 35677655 46899999999999876
Q ss_pred H
Q 011501 286 S 286 (484)
Q Consensus 286 ~ 286 (484)
.
T Consensus 292 ~ 292 (305)
T PRK12921 292 T 292 (305)
T ss_pred H
Confidence 4
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-13 Score=136.13 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=132.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|+|||+|.||..++..|.++|+ +|.+|||++++.+.+.+... ++....+..+++.. +|+||+|+|+
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~-----g~~~~~~~~~~~~~---aDiVilav~p 72 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYP-----GIHVAKTIEEVISQ---SDLIFICVKP 72 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcC-----CeEEECCHHHHHHh---CCEEEEecCH
Confidence 479999999999999999999994 79999999988877765321 25567788888776 9999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccC--CCHHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPG--GSFEAYKHIE 156 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~g--g~~~~~~~v~ 156 (484)
. .+.++++++.+++.++++||++++.. ....+.+.+..+.++++.. .+..+..|. .++.| .+++..+.++
T Consensus 73 ~-~~~~vl~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g~~~~~~~~~~~~ 145 (273)
T PRK07680 73 L-DIYPLLQKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFGSRCSEEDQQKLE 145 (273)
T ss_pred H-HHHHHHHHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeCCCCCHHHHHHHH
Confidence 5 78999999999998899999999865 3444544444333344432 334455777 44555 4677889999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhh
Q 011501 157 DILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIH--NGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW 225 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~--N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~ 225 (484)
++|+.+|.. +++.+.-.-...-+.+ -++.+..+..+.++. .++.| +++++..+++...
T Consensus 146 ~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~G-l~~~~a~~~~~~~ 205 (273)
T PRK07680 146 RLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETN-ISKEEATTLASEM 205 (273)
T ss_pred HHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHH--HHhcC-CCHHHHHHHHHHH
Confidence 999999942 4554320000000111 112233333333332 24467 9999988887543
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.3e-14 Score=142.92 Aligned_cols=271 Identities=13% Similarity=0.087 Sum_probs=151.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----C-C--CCeeecCCHhHHH-hhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----G-N--LPLYGFHDPESFV-HSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~--~~~~~~~s~~e~~-~~l~~advIi~ 75 (484)
|||+|||+|.||..+|..|+++|++|.+|+|+++.++.+.+.+.+. + . .++....++++.+ .. +|+||+
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~Dliii 77 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDN---ATCIIL 77 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCC---CCEEEE
Confidence 4899999999999999999999999999999998888776542110 0 0 0234556666655 34 899999
Q ss_pred ecCCCchHHHHHHHHhh-hcCCCCEEEecCCCChHH-----HHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccc-cCC
Q 011501 76 LVKAGSPVDQTIKTLSV-YMEKGDCIIDGGNEWYEN-----TERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLM-PGG 147 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~-~l~~g~iiId~st~~~~~-----~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~-~gg 147 (484)
+||+. +++++++++.+ .+.++..|+..+++.... .+.+.+.+....+..+..|-.. .+.+...+ .+. .|.
T Consensus 78 avks~-~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a-~~~~~~~~~~~~~~~~ 155 (326)
T PRK14620 78 AVPTQ-QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFA-KEIAEKLPCSIVLAGQ 155 (326)
T ss_pred EeCHH-HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHH-HHHHcCCCcEEEEecC
Confidence 99987 89999999998 887777666666665221 1222222222222233333211 12333344 333 444
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeC-CchhHHHHHHHHH-----------------HHHHHHHhHHHHHHHHHHH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVG-KGGSGNFVKMIHN-----------------GIEYGDMQLIAEAYDVLKS 209 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G-~~g~g~~~K~v~N-----------------~i~~~~~~~~~Ea~~l~~~ 209 (484)
+.+..+.+..+|+.-+-+ ++.. +.-.-.+.|++-| .......+++.|+..++++
T Consensus 156 ~~~~~~~l~~~l~~~~~~--------~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a 227 (326)
T PRK14620 156 NETLGSSLISKLSNENLK--------IIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSA 227 (326)
T ss_pred CHHHHHHHHHHHCCCCeE--------EEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence 555444454544332211 2222 2233334444433 4444467788999999999
Q ss_pred hCCC--CHHHHHHHHHhhccCcchhhh--hhhhccccccccCCCCchhHHHhhhhcCCCCchH----HHHHHHHHcCCCc
Q 011501 210 VGKL--SNEELQQVFSEWNKGELLSFL--IEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGK----WTVQQAADLSVAA 281 (484)
Q Consensus 210 ~g~~--~~~~i~~~~~~~~~g~~~s~l--~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~----~~~~~A~~~gvp~ 281 (484)
.| . +++++...- |.++-.+ ...+++..+.+..+..+..++.+.+...+.-+|. ...+.++++|+++
T Consensus 228 ~G-~~~~~~~~~gl~-----g~gdl~~t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~ 301 (326)
T PRK14620 228 KN-GSIDLNTLIGPS-----CLGDLILTCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIEL 301 (326)
T ss_pred hC-CCCCcchhhccc-----hhhhhhheecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCC
Confidence 98 5 777774321 1111000 0000111000000112233444443333323342 4668899999999
Q ss_pred chHHHHHHHHHHh
Q 011501 282 PTIESSLDARFLS 294 (484)
Q Consensus 282 p~~~~av~~r~~s 294 (484)
|++.. +++.+..
T Consensus 302 P~~~~-l~~~~~~ 313 (326)
T PRK14620 302 PICES-IYNLLYE 313 (326)
T ss_pred CHHHH-HHHHHhC
Confidence 98764 4554433
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-14 Score=138.68 Aligned_cols=192 Identities=11% Similarity=0.135 Sum_probs=131.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+|||||+|.||.+|++.|.+.|+. +.+|||++++.+++.+... ++..+.++.+++++ +|+||+|+|+
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~-----~~~~~~~~~~~~~~---aDvVilav~p- 71 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFP-----KVRIAKDNQAVVDR---SDVVFLAVRP- 71 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcC-----CceEeCCHHHHHHh---CCEEEEEeCH-
Confidence 4899999999999999999999864 5799999999888776431 14567788888877 9999999995
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
+.+.++++++ . +.++++||++.... ....+.+.+......+..+|..... ...|.+.+.+++ +.++++|+
T Consensus 72 ~~~~~vl~~l-~-~~~~~~vis~~ag~--~~~~l~~~~~~~~~~~r~~P~~~~a--~~~g~t~~~~~~----~~~~~l~~ 141 (258)
T PRK06476 72 QIAEEVLRAL-R-FRPGQTVISVIAAT--DRAALLEWIGHDVKLVRAIPLPFVA--ERKGVTAIYPPD----PFVAALFD 141 (258)
T ss_pred HHHHHHHHHh-c-cCCCCEEEEECCCC--CHHHHHHHhCCCCCEEEECCCChhh--hCCCCeEecCCH----HHHHHHHH
Confidence 5788888776 2 56788999877554 4445555554334556777874322 234555555553 57899999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
.+|.. ++++++..-...-.+. +..+..+.++.++..++.+.| +++++..+++..
T Consensus 142 ~lG~~--------~~~~~e~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~ 195 (258)
T PRK06476 142 ALGTA--------VECDSEEEYDLLAAAS-ALMATYFGILETATGWLEEQG-LKRQKARAYLAP 195 (258)
T ss_pred hcCCc--------EEECChHhccceeehh-ccHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 99964 3344321000000000 122223357788889999998 999999888743
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=143.52 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=122.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+|.||..+|..|.+.|+ +|++|||++++.+.+.+.+. ....+.++++.++. +|+||+|+|..
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~-----~~~~~~~~~~~~~~---aDvViiavp~~ 77 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGL-----GDRVTTSAAEAVKG---ADLVILCVPVG 77 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCC-----CceecCCHHHHhcC---CCEEEECCCHH
Confidence 4689999999999999999999995 89999999988777654331 12344567776665 99999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHH-hhh-------cCC-cc---ccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEE-GAR-------YGP-SL---MPGG 147 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~-~a~-------~g~-~i---~~gg 147 (484)
...+++.++.+.++++.+|+|.++........+.+.+ ..+++|+++ |+.|++. ++. .|. .+ +.++
T Consensus 78 -~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 -ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred -HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC
Confidence 6788888888889999999999988765554444433 347789997 8887652 222 222 22 2357
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g 182 (484)
+++.++.++++++.+|.+ ++++++..-.
T Consensus 156 ~~~~~~~~~~l~~~lG~~-------~~~~~~~~hD 183 (307)
T PRK07502 156 DPAAVARLTAFWRALGAR-------VEEMDPEHHD 183 (307)
T ss_pred CHHHHHHHHHHHHHcCCE-------EEEcCHHHHh
Confidence 889999999999999976 3777764433
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-13 Score=135.14 Aligned_cols=149 Identities=9% Similarity=0.102 Sum_probs=113.3
Q ss_pred CeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHH-----HHHHHhhhcCCCCeeecC
Q 011501 4 TRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVD-----ETVERAKQEGNLPLYGFH 58 (484)
Q Consensus 4 ~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~-----~~~~~~~~~~~~~~~~~~ 58 (484)
|||.|+|.|+. |.+||.+|+++||+|++|||++++.+ .+.+.+ +..++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaG-------A~~Aa 73 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAG-------VKVVS 73 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCC-------CeecC
Confidence 58999999975 78999999999999999999987653 344332 56788
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHH---HHHcCCeEEe---ccCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKA---VAELGLLYLG---MGVSG 132 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~---l~~~g~~~i~---~pv~g 132 (484)
++.++++. +|+||+|+|++.+++++++++++.+.+|++|||+||++|....+..+. +.++.+...+ +.|-|
T Consensus 74 S~aEAAa~---ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 74 DDKEAAKH---GEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred CHHHHHhC---CCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 99999988 999999999999999999999999999999999999999998887665 3334443333 23333
Q ss_pred CHHhhhcCCccccC--------CCHHHHHHHHHHHHHHhcc
Q 011501 133 GEEGARYGPSLMPG--------GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 133 g~~~a~~g~~i~~g--------g~~~~~~~v~~ll~~i~~~ 165 (484)
.+. ++..++.| .+++.++++.++.++.++.
T Consensus 151 ~~~---~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 151 TPQ---HGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKK 188 (341)
T ss_pred CCC---CceeeeccccccccccCCHHHHHHHHHHHHHhCCC
Confidence 221 21122222 2678888888888888865
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.7e-13 Score=133.16 Aligned_cols=198 Identities=17% Similarity=0.181 Sum_probs=131.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
||+|+|||+|.||..++..|.++| ++|.+|||++++.+.+.+.. ++....+.++++.. +|+||+|+|+
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~------g~~~~~~~~~~~~~---advVil~v~~ 72 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY------GVRAATDNQEAAQE---ADVVVLAVKP 72 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc------CCeecCChHHHHhc---CCEEEEEcCH
Confidence 468999999999999999999999 78999999998887776542 24556778887766 9999999988
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC-ccccCC--CHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP-SLMPGG--SFEAYKHI 155 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~-~i~~gg--~~~~~~~v 155 (484)
. .+.++++.+.+.+ +++||.++++.+.. .+.+.+. .+.+++.+ | ..+.....+. .+.++. +++.++.+
T Consensus 73 ~-~~~~v~~~l~~~~--~~~vvs~~~gi~~~--~l~~~~~-~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v 144 (267)
T PRK11880 73 Q-VMEEVLSELKGQL--DKLVVSIAAGVTLA--RLERLLG-ADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELV 144 (267)
T ss_pred H-HHHHHHHHHHhhc--CCEEEEecCCCCHH--HHHHhcC-CCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHH
Confidence 6 7999999998877 56888877766433 3333332 34445443 3 2223333444 455554 88999999
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHH-HHHHHHHHHHHhHHHHHH-HHHHHhCCCCHHHHHHHHHhhccC
Q 011501 156 EDILLKVAAQVPDSGPCVTYVGKGGSGNFVK-MIHNGIEYGDMQLIAEAY-DVLKSVGKLSNEELQQVFSEWNKG 228 (484)
Q Consensus 156 ~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K-~v~N~i~~~~~~~~~Ea~-~l~~~~g~~~~~~i~~~~~~~~~g 228 (484)
+.+|+.+|.. +++.++..-+.+- +..++- +.+..+.|++ ..+.+.| +++++..+++..+-.|
T Consensus 145 ~~l~~~lG~~--------~~~~~e~~~d~~~a~~~~~p--a~~~~~~~~~~~~~~~~G-l~~~~a~~~~~~~~~g 208 (267)
T PRK11880 145 ENLLSAFGKV--------VWVDDEKQMDAVTAVSGSGP--AYVFLFIEALADAGVKLG-LPREQARKLAAQTVLG 208 (267)
T ss_pred HHHHHhCCeE--------EEECChHhcchHHHHhcChH--HHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHH
Confidence 9999999953 5665322222222 111211 1122223333 3345677 9999988887544333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.4e-13 Score=137.51 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=147.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh--cCCC--CeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ--EGNL--PLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~--~~~~--~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|+|||+|.||..+|..|+++|++|++++|+++..+.+.+.+.. .+.. .+....+++++ + .+|+||+++|.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~---~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G---PQDLVILAVKA 76 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C---CCCEEEEeccc
Confidence 489999999999999999999999999999998888777654321 0000 01223444443 3 49999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC---CHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG---SFEA 151 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg---~~~~ 151 (484)
. +++++++.+.+.+.++++||...|.. ...+.+.+.+... |+.++++-..++......+. .+.+|. +.+.
T Consensus 77 ~-~~~~~~~~l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 77 Y-QLPAALPSLAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred c-cHHHHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 7 78999999999988888888888764 2233334433322 11222221211111111222 233332 2233
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHh
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSV 210 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~~~Ea~~l~~~~ 210 (484)
.+.+.++|+..+-+. ...-+.-...+.|++.|. .......++.|+..++++.
T Consensus 155 ~~~l~~~l~~~~~~~-------~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~ 227 (304)
T PRK06522 155 AEALADLLNAAGLDV-------EWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAE 227 (304)
T ss_pred HHHHHHHHHhcCCCC-------CCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHc
Confidence 555666666554321 222223444455555442 2334556789999999998
Q ss_pred CCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 211 GKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 211 g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
| ++ .+.+.+.+......... ...++..++...+. -.+|.+.. +.++.|+++|+|+|....
T Consensus 228 G-~~~~~~~~~~~~~~~~~~~~~-~~sSm~~D~~~gr~-----tEid~i~G---------~~v~~a~~~gv~~P~~~~ 289 (304)
T PRK06522 228 G-VHLSVEEVREYVRQVIQKTAA-NTSSMLQDLEAGRP-----TEIDAIVG---------YVLRRGRKHGIPTPLNDA 289 (304)
T ss_pred C-CCCChHHHHHHHHHHhhccCC-CCchHHHHHHcCCC-----cccchhcc---------HHHHHHHHcCCCCcHHHH
Confidence 8 65 34444433322111111 12233344433221 24455443 578999999999998654
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-14 Score=131.24 Aligned_cols=149 Identities=20% Similarity=0.222 Sum_probs=98.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+. ....+ ++.++++.++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~--~l~~t~~~~~ai~~-- 76 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAG--RLRATTDIEEAIKD-- 76 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTT--SEEEESEHHHHHHH--
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccc--cchhhhhhhhhhhc--
Confidence 699999999999999999999999999999999988776531 11111 57888899988887
Q ss_pred CCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHH-HHcC-----CeEEeccCCCC
Q 011501 69 KPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAV-AELG-----LLYLGMGVSGG 133 (484)
Q Consensus 69 ~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l-~~~g-----~~~i~~pv~gg 133 (484)
+|++|+|||++ ..++++++.+.+.++++++||..||..|.+++++.+.+ ++.+ +++.-+|-.-.
T Consensus 77 -adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~ 155 (185)
T PF03721_consen 77 -ADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLR 155 (185)
T ss_dssp --SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------
T ss_pred -cceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccC
Confidence 99999999876 34778889999999999999999999999999665544 4333 45566673322
Q ss_pred H---HhhhcCC-ccccCCCHHHHH-HHHH
Q 011501 134 E---EGARYGP-SLMPGGSFEAYK-HIED 157 (484)
Q Consensus 134 ~---~~a~~g~-~i~~gg~~~~~~-~v~~ 157 (484)
+ ..-...+ .++.|.+++..+ .+++
T Consensus 156 ~G~a~~d~~~~~rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 156 EGRAIEDFRNPPRVVGGCDDESAEERLKE 184 (185)
T ss_dssp TTSHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred CCCcchhccCCCEEEEeCCcHHHHHHHhc
Confidence 2 1122233 566666544333 4444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-13 Score=139.55 Aligned_cols=171 Identities=14% Similarity=0.139 Sum_probs=122.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|||+|.||.+||..|.++|++|.+|+++++..+.....+.. ..-...++++++++. +|+||+|||.. .+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~---aDlVilavP~~-~~ 73 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFG---VIDELAADLQRAAAE---ADLIVLAVPVD-AT 73 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCC---CCcccccCHHHHhcC---CCEEEEeCCHH-HH
Confidence 379999999999999999999999999999988765443322110 001123566677666 99999999996 78
Q ss_pred HHHHHHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHH-h-------hhcCC-ccccC---CCH
Q 011501 84 DQTIKTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEE-G-------ARYGP-SLMPG---GSF 149 (484)
Q Consensus 84 ~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~-~-------a~~g~-~i~~g---g~~ 149 (484)
.++++++.+ .++++.+|+|.++++........+. ...+..|++ .|+.|++. + ...|. .++.. .++
T Consensus 74 ~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~ 152 (359)
T PRK06545 74 AALLAELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDP 152 (359)
T ss_pred HHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCH
Confidence 899999987 4888999999999986655554433 345678998 58888742 2 12344 33332 578
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHH
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIH 189 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~ 189 (484)
+.++.++++++.+|+. ++++.+..-...+-++.
T Consensus 153 ~~~~~v~~l~~~lGa~-------~v~~~~~~HD~~~A~vs 185 (359)
T PRK06545 153 DAVAELKDLLSGTGAK-------FVVLDAEEHDRAVALVS 185 (359)
T ss_pred HHHHHHHHHHHHcCCE-------EEECCHHHHhHHHhHhc
Confidence 9999999999999976 36777655444444443
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-12 Score=127.63 Aligned_cols=197 Identities=12% Similarity=0.098 Sum_probs=129.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+ ++|||||+|.||.+|+.+|.++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+|
T Consensus 1 ~~-~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLa 70 (272)
T PRK12491 1 MN-KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY------GITITTNNNEVANS---ADILILS 70 (272)
T ss_pred CC-CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc------CcEEeCCcHHHHhh---CCEEEEE
Confidence 44 489999999999999999999885 6999999999988776532 24567788888877 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCC--CHHHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGG--SFEAYK 153 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~ 153 (484)
||+ +++.++++++.+.++++.+||+.-... +...+.+.+....-..--+|-. +.....|. .+..+. +++..+
T Consensus 71 vkP-~~~~~vl~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~ 145 (272)
T PRK12491 71 IKP-DLYSSVINQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIK 145 (272)
T ss_pred eCh-HHHHHHHHHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHH
Confidence 997 589999999999888888999977765 3334444443211122334533 23344566 344433 566778
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 154 HIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 154 ~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
.++.+|+.+|.- +.+.+. -....+-=.--++.+..+..+.++ +.+.| ++.++..++..+
T Consensus 146 ~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~G-l~~~~A~~l~~~ 206 (272)
T PRK12491 146 EVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGG-MPRKQAYKFAAQ 206 (272)
T ss_pred HHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 899999999952 333321 001110001112223333333333 34566 999998887643
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-13 Score=132.29 Aligned_cols=253 Identities=13% Similarity=0.131 Sum_probs=151.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cCCC---CeeecCCHhHHHhhcCCCcEEE
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ----EGNL---PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~~~---~~~~~~s~~e~~~~l~~advIi 74 (484)
+.|+|+|||+|.||..+|..|+++|++|+++.|++. +.+...+.. .+.. .+...+++++ . ..+|+||
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~D~vi 77 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAED-M---PPCDWVL 77 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhh-c---CCCCEEE
Confidence 467999999999999999999999999999999863 334332211 0000 0112223322 2 3489999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-cccc---C
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMP---G 146 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~---g 146 (484)
+|||.. ++.++++.+.+.+.++.+|+...|.. ...+.+.+.+.+. |+.++++...+...-...+. .+.+ .
T Consensus 78 lavK~~-~~~~~~~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~ 155 (313)
T PRK06249 78 VGLKTT-ANALLAPLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHS 155 (313)
T ss_pred EEecCC-ChHhHHHHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCC
Confidence 999987 67888899999888888888888875 3334444444332 33444443332211111222 2222 2
Q ss_pred C-C-----HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhH
Q 011501 147 G-S-----FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQL 199 (484)
Q Consensus 147 g-~-----~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~ 199 (484)
| + .+..+.+..+|+..+-. +....+.-..-+.|++.|. .......+
T Consensus 156 ~~~~~~~~~~~~~~l~~~l~~ag~~-------~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~ 228 (313)
T PRK06249 156 GPAADDGITARVEEGAALFRAAGID-------SQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRAL 228 (313)
T ss_pred CCcccchHHHHHHHHHHHHHhCCCC-------ceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHH
Confidence 2 2 35556666777765533 2333444555555665442 23445667
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHc
Q 011501 200 IAEAYDVLKSVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADL 277 (484)
Q Consensus 200 ~~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~ 277 (484)
+.|++.++++.| ++ .+.+..+++. ..... ....++..++...+ ...+|.+.. +.++.|+++
T Consensus 229 ~~E~~~va~a~G-i~~~~~~~~~~~~~-~~~~~-~~~sSM~qD~~~gr-----~tEid~i~G---------~vv~~a~~~ 291 (313)
T PRK06249 229 MAEVIQGAAACG-HTLPEGYADHMLAV-TERMP-DYRPSMYHDFEEGR-----PLELEAIYA---------NPLAAARAA 291 (313)
T ss_pred HHHHHHHHHhcC-CCCChhHHHHHHHH-hhcCC-CCCChHHHHHHCCC-----cccHHHHhh---------HHHHHHHHh
Confidence 899999999998 76 3333333322 12111 12234444554432 146777766 579999999
Q ss_pred CCCcchHHH
Q 011501 278 SVAAPTIES 286 (484)
Q Consensus 278 gvp~p~~~~ 286 (484)
|+|+|....
T Consensus 292 Gi~~P~~~~ 300 (313)
T PRK06249 292 GCAMPRVEM 300 (313)
T ss_pred CCCCcHHHH
Confidence 999998664
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-12 Score=128.05 Aligned_cols=157 Identities=17% Similarity=0.241 Sum_probs=114.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|+|||+|.||..+|..|.+.|++|++||+++.. +..... ++..+.+.++++.. .+|+||+|+|.. .
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~-------gv~~~~~~~e~~~~--~aDvVilavp~~-~ 104 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAEL-------GVSFFRDPDDFCEE--HPDVVLLCTSIL-S 104 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHc-------CCeeeCCHHHHhhC--CCCEEEEecCHH-H
Confidence 478999999999999999999999999999999642 222221 24556778777531 289999999986 7
Q ss_pred HHHHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHh--hhcCCcc-cc-------CCCHH
Q 011501 83 VDQTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEG--ARYGPSL-MP-------GGSFE 150 (484)
Q Consensus 83 v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~--a~~g~~i-~~-------gg~~~ 150 (484)
+.++++++ .+.++++.+|+|.++++-.....+.+.+. .+..|+.+ |+.|.+.+ ...+..+ .. +.+++
T Consensus 105 ~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~ 183 (304)
T PLN02256 105 TEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREA 183 (304)
T ss_pred HHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHH
Confidence 88999888 67788999999999987444444444332 35678885 88877643 2233322 21 23678
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
+++.++.+++.+|+++ +.+.+
T Consensus 184 ~~~~l~~l~~~lGa~v-------~~~~~ 204 (304)
T PLN02256 184 RCERFLDIFEEEGCRM-------VEMSC 204 (304)
T ss_pred HHHHHHHHHHHCCCEE-------EEeCH
Confidence 8999999999999874 66655
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=6e-13 Score=133.32 Aligned_cols=178 Identities=15% Similarity=0.133 Sum_probs=130.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhH-------HHHHHHH-------hhhcCCC----------CeeecCC--HhHHHhhc
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSK-------VDETVER-------AKQEGNL----------PLYGFHD--PESFVHSI 67 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~-------~~~~~~~-------~~~~~~~----------~~~~~~s--~~e~~~~l 67 (484)
||.++|..++.+|++|.+||++++. ++...+. ....+.. +++.+.+ +.++++.
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~- 79 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD- 79 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc-
Confidence 8999999999999999999999842 1111111 0000000 3555544 5566666
Q ss_pred CCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHH----HcCCeEEecc-------CCCCHH
Q 011501 68 QKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVA----ELGLLYLGMG-------VSGGEE 135 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~p-------v~gg~~ 135 (484)
+|+||.|||++.+++..+ .++.+.++++.+| +||+++-...++++.+. ..|.||+++| |++|+
T Consensus 80 --aD~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~- 154 (314)
T PRK08269 80 --ADLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD- 154 (314)
T ss_pred --CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC-
Confidence 999999999998888666 6788888888877 55555556667777663 3488999888 54443
Q ss_pred hhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 136 GARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 136 ~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
++++++++.+.++++.+|+.+ +++++.+ |+ +.| .....+++|++.++++.+ +++
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~-------v~v~d~~-Gf----i~n---ri~~~~l~EAl~l~e~g~-~~~ 208 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVP-------VVCGPSP-GY----IVP---RIQALAMNEAARMVEEGV-ASA 208 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcE-------EEecCCC-Cc----chH---HHHHHHHHHHHHHHHhCC-CCH
Confidence 568999999999999999764 8888754 43 233 345677899999999988 999
Q ss_pred HHHHHHHH
Q 011501 216 EELQQVFS 223 (484)
Q Consensus 216 ~~i~~~~~ 223 (484)
+++.+++.
T Consensus 209 e~iD~a~~ 216 (314)
T PRK08269 209 EDIDKAIR 216 (314)
T ss_pred HHHHHHHH
Confidence 99998873
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-12 Score=125.83 Aligned_cols=160 Identities=18% Similarity=0.230 Sum_probs=114.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee--ecCCH-hHHHhhcCCCcEEEEecC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY--GFHDP-ESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~--~~~s~-~e~~~~l~~advIi~~vp 78 (484)
.+++|+|+|+|.||..+|+.|.++|+.|.+++++........+... ++. ...+. .+.+.. +|+||++||
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l-----gv~d~~~~~~~~~~~~~---aD~VivavP 73 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL-----GVIDELTVAGLAEAAAE---ADLVIVAVP 73 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc-----Ccccccccchhhhhccc---CCEEEEecc
Confidence 4579999999999999999999999998777666544322222111 111 11222 333333 899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCH--HhhhcCC-cc-ccCC--CHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGE--EGARYGP-SL-MPGG--SFEA 151 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~--~~a~~g~-~i-~~gg--~~~~ 151 (484)
-. ++.++++++.+.+++|.+|+|.+++.-...+...+...+.. +|++. |++|++ ..-..+. .+ .++. +.+.
T Consensus 74 i~-~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~ 151 (279)
T COG0287 74 IE-ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEW 151 (279)
T ss_pred HH-HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHH
Confidence 97 89999999999999999999999998666655555544444 89987 788773 3333455 33 3443 5678
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
++++..+++.+|+++ +++.+
T Consensus 152 ~~~~~~~~~~~ga~~-------v~~~~ 171 (279)
T COG0287 152 VEEVKRLWEALGARL-------VEMDA 171 (279)
T ss_pred HHHHHHHHHHcCCEE-------EEcCh
Confidence 899999999999874 66654
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.47 E-value=4e-12 Score=123.18 Aligned_cols=195 Identities=15% Similarity=0.095 Sum_probs=126.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC---c-EEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
..+||+|||+|.||.+++..|+++|+ + +++++| ++++.+.+.+.. ++..+.+.++++++ +|+||++
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~DiViia 73 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------NVSTTTDWKQHVTS---VDTIVLA 73 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------CcEEeCChHHHHhc---CCEEEEe
Confidence 35789999999999999999998873 3 778887 467777766532 24566788888876 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhhhcCC-cc--ccCCCHHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGARYGP-SL--MPGGSFEAY 152 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a~~g~-~i--~~gg~~~~~ 152 (484)
+|+. ...++++++.+.++ +++||+++.+..... +.+.+. .+..+ ..+|-.. .....|. .+ -..++++..
T Consensus 74 vp~~-~~~~v~~~l~~~~~-~~~vis~~~gi~~~~--l~~~~~-~~~~v~r~~Pn~a--~~v~~g~~~~~~~~~~~~~~~ 146 (245)
T PRK07634 74 MPPS-AHEELLAELSPLLS-NQLVVTVAAGIGPSY--LEERLP-KGTPVAWIMPNTA--AEIGKSISLYTMGQSVNETHK 146 (245)
T ss_pred cCHH-HHHHHHHHHHhhcc-CCEEEEECCCCCHHH--HHHHcC-CCCeEEEECCcHH--HHHhcCCeEEeeCCCCCHHHH
Confidence 9987 77899999888775 678888877764332 333332 22222 3345332 2233443 22 334688899
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
+.++.+|+.+|.. +++.+. -..+.+--..-++.+..+..+.++ +.+.| +++++..+++..
T Consensus 147 ~~v~~lf~~~G~~--------~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~G-l~~~~a~~~~~~ 208 (245)
T PRK07634 147 ETLQLILKGIGTS--------QLCTEEEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYG-VDEETAKHLVIQ 208 (245)
T ss_pred HHHHHHHHhCCCE--------EEECHHHcchHHhhhcchHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHH
Confidence 9999999999964 334321 111111111122333333333333 56777 999998888744
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.8e-12 Score=126.36 Aligned_cols=195 Identities=17% Similarity=0.256 Sum_probs=127.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESF 63 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~ 63 (484)
|+.++|||||.|.||.++|..++..||+|.++|++++.+++...... ..|.+ +++...++.+
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~- 79 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAA- 79 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhH-
Confidence 56789999999999999999999988999999999876554432211 11100 2344444442
Q ss_pred HhhcCCCcEEEEecCCCchHHH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH--H--cCCeEEeccCCCCHHhhh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA--E--LGLLYLGMGVSGGEEGAR 138 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~--~g~~~i~~pv~gg~~~a~ 138 (484)
++.||+||.+|+.+..++. ++.++-...+++.|+-..+++.+.+ ++++.+. + -|.||+..|....-.
T Consensus 80 ---l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it--~ia~~~~rper~iG~HFfNP~~~m~LV--- 151 (307)
T COG1250 80 ---LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSIT--ELAEALKRPERFIGLHFFNPVPLMPLV--- 151 (307)
T ss_pred ---hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHH--HHHHHhCCchhEEEEeccCCCCcceeE---
Confidence 3349999999999988874 4477777776666554433333322 3344432 1 166776654221110
Q ss_pred cCCccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 139 YGPSLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 139 ~g~~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
=++.|- ++++++.+..+.+.+++. | + +...-.| ++.|.+. ..++.|++.+..+.. .+++
T Consensus 152 ---EvI~g~~T~~e~~~~~~~~~~~igK~-----~--v-v~~D~pG----Fi~NRil---~~~~~eA~~l~~eGv-a~~e 212 (307)
T COG1250 152 ---EVIRGEKTSDETVERVVEFAKKIGKT-----P--V-VVKDVPG----FIVNRLL---AALLNEAIRLLEEGV-ATPE 212 (307)
T ss_pred ---EEecCCCCCHHHHHHHHHHHHHcCCC-----C--E-eecCCCc----eehHhHH---HHHHHHHHHHHHhCC-CCHH
Confidence 133342 789999999999999943 2 2 2223344 3445444 456699999999877 9999
Q ss_pred HHHHHHH
Q 011501 217 ELQQVFS 223 (484)
Q Consensus 217 ~i~~~~~ 223 (484)
++..++.
T Consensus 213 ~ID~~~~ 219 (307)
T COG1250 213 EIDAAMR 219 (307)
T ss_pred HHHHHHH
Confidence 9999874
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=139.24 Aligned_cols=156 Identities=18% Similarity=0.261 Sum_probs=113.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~-------Gv~~~~~~~el~~~--~aDvVILavP~~-~ 437 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKL-------GVSYFSDADDLCEE--HPEVILLCTSIL-S 437 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHc-------CCeEeCCHHHHHhc--CCCEEEECCChH-H
Confidence 479999999999999999999999999999999643 333222 24556788887652 289999999975 8
Q ss_pred HHHHHHHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcC---Cc-----cccCCCHHHH
Q 011501 83 VDQTIKTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYG---PS-----LMPGGSFEAY 152 (484)
Q Consensus 83 v~~vl~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g---~~-----i~~gg~~~~~ 152 (484)
+.++++++.. .+++|.+|+|++++. ....+..+.+...+..|+ ..|++|.+.+ ..| .. .+++++.+..
T Consensus 438 ~~~vi~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~ 515 (667)
T PLN02712 438 TEKVLKSLPFQRLKRSTLFVDVLSVK-EFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRV 515 (667)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCcc-HHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchH
Confidence 8899988876 578899999999997 344444444445578888 5799988754 233 11 3345555444
Q ss_pred H---HHHHHHHHHhccCCCCCCceEEeCC
Q 011501 153 K---HIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 153 ~---~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
+ .+..+++.+|.++ +.+.+
T Consensus 516 ~~~~~l~~l~~~lGa~v-------v~ms~ 537 (667)
T PLN02712 516 SRCDSFLDIFAREGCRM-------VEMSC 537 (667)
T ss_pred HHHHHHHHHHHHcCCEE-------EEeCH
Confidence 4 4458888888763 66655
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-13 Score=140.97 Aligned_cols=119 Identities=15% Similarity=0.293 Sum_probs=100.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHccCC-CCCC
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRI---WKGGCIIRAIFLDRIKKAYDRNP-DLAN 395 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~Gcii~s~ll~~i~~~~~~~~-~~~~ 395 (484)
+.|+||++||+||+|+|+.|++++|+|.+++++ .++|..++.++ |+.| ..+|++++...+.+..++ ..+.
T Consensus 180 ~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~-----~Gld~~~l~~vf~~~~~g-~~~S~llei~~~~l~~~d~~~~~ 253 (493)
T PLN02350 180 PGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSV-----GGLSNEELAEVFAEWNKG-ELESFLIEITADIFSVKDDKGDG 253 (493)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhhcCCCCCC
Confidence 358999999999999999999999999999863 24898888777 9988 789999999888876553 2225
Q ss_pred cccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 396 VLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 396 ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
.+++...++..+|++| +|+++.|.++|+|+|+|++++. |.++++.+|..
T Consensus 254 f~l~~i~Kd~~~kGTg--~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~~r~~ 304 (493)
T PLN02350 254 YLVDKILDKTGMKGTG--KWTVQQAAELSVAAPTIAASLDARYLSGLKEERVA 304 (493)
T ss_pred chHHHHHhhhcccchH--HHHHHHHHHhCCCccHHHHHHHHHHHhccHHHHHH
Confidence 6777778888889999 9999999999999999999996 88888877755
|
|
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=107.49 Aligned_cols=90 Identities=22% Similarity=0.354 Sum_probs=77.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCC---CcEEEE-eCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKG---FPISVY-NRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~vp~ 79 (484)
||||||.|+||.+|+..|.++| ++|.++ +|++++.+++.++.. +..+. +..++++. +|+||+|||+
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~------~~~~~~~~~~~~~~---advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG------VQATADDNEEAAQE---ADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT------TEEESEEHHHHHHH---TSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc------cccccCChHHhhcc---CCEEEEEECH
Confidence 7999999999999999999999 899954 999999999887653 44555 88999998 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
. ++.++++++ +...++++||+..+
T Consensus 72 ~-~~~~v~~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 72 Q-QLPEVLSEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp G-GHHHHHHHH-HHHHTTSEEEEEST
T ss_pred H-HHHHHHHHH-hhccCCCEEEEeCC
Confidence 6 899999999 77789999999865
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=121.52 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=110.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc-C--CCCee-ecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE-G--NLPLY-GFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~-~--~~~~~-~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||+||| +|.||..++..|+++|++|.+|+|++++.+.+....... + +.... ...+..+.++. +|+||+|||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~---aDvVilavp 77 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKR---ADVVILAVP 77 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhc---CCEEEEECC
Confidence 5899997 899999999999999999999999999887776532110 0 00011 12355666666 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHH---------------HHHHHHHHHHcCCeEEec-c-----CCCCHHhh
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN---------------TERRQKAVAELGLLYLGM-G-----VSGGEEGA 137 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~---------------~~~~~~~l~~~g~~~i~~-p-----v~gg~~~a 137 (484)
.. .+.++++++.+.+. +++|||+++....+ ++.+.+.+.. +.+++-+ | +..+. ..
T Consensus 78 ~~-~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~-~~ 153 (219)
T TIGR01915 78 WD-HVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDV-DD 153 (219)
T ss_pred HH-HHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCC-CC
Confidence 87 78888888877664 58999998876431 1333333322 1333333 2 22221 11
Q ss_pred hcCC-ccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchh
Q 011501 138 RYGP-SLMPGGSFEAYKHIEDILLKV-AAQVPDSGPCVTYVGKGGS 181 (484)
Q Consensus 138 ~~g~-~i~~gg~~~~~~~v~~ll~~i-~~~~~~~~~~~~~~G~~g~ 181 (484)
..+. .+++|.|+++.+.+..+.+.+ |-++ +.+|+...
T Consensus 154 ~~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~-------vd~G~l~~ 192 (219)
T TIGR01915 154 EVDCDVLVCGDDEEAKEVVAELAGRIDGLRA-------LDAGPLEN 192 (219)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHhcCCCCc-------ccCCchhh
Confidence 1234 556666788888999999999 8764 77887443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=112.03 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccc-cccccCCCCchhHHHhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADI-FGIKDDKGDGYLVDKVL 258 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~-l~~~~~~~~~~~l~~i~ 258 (484)
|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+. +.. ++|.++|.++.+.
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~~~~~~~~-~~~~~~f~l~~~~ 75 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAG-LDPEQLLDVL---SAGSGGSWMLKNRAPRMILN-GDFDPGFSLDLAR 75 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-S-HHHHHHHH---HTSTTHBHHHHHHHHHHHHT-TTTCSSSBHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---ccCCcCchHHHhhhhhhhhc-ccCCccchhHhhc
Confidence 78999999999999999999999999999999 9999999998 5788899999988763 443 5688999999999
Q ss_pred hhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 259 DKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 259 ~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
||+. ++++.|++.|+|+|+...+ .+.+..+
T Consensus 76 KDl~------l~~~~a~~~g~~~p~~~~~-~~~~~~a 105 (122)
T PF14833_consen 76 KDLR------LALDLAKEAGVPLPLGSAA-RQLYQAA 105 (122)
T ss_dssp HHHH------HHHHHHHHTT---HHHHHH-HHHHHHH
T ss_pred cHHH------HHHHHHHHcCCCCHHHHHH-HHHHHHH
Confidence 9996 9999999999999988765 5555444
|
... |
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=115.58 Aligned_cols=124 Identities=19% Similarity=0.314 Sum_probs=91.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---CC----CeeecCCHhHHHhhcCCCcEEEEec
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---NL----PLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
||+|||.|+||.++|..|+++|++|++|.|+++.++.+.+.+.+.. +. ++..+++++++++. +|+||++|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~---ad~Iiiav 77 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALED---ADIIIIAV 77 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT----SEEEE-S
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCc---ccEEEecc
Confidence 7999999999999999999999999999999999998887654211 01 46778899999887 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC-hHH----HHHHHHHHHHcCCeEEeccCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW-YEN----TERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~----~~~~~~~l~~~g~~~i~~pv~g 132 (484)
|.. ..+++++++.++++++.+||.++.+. +.+ .+.+.+.+....+.++..|-+.
T Consensus 78 Ps~-~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A 136 (157)
T PF01210_consen 78 PSQ-AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFA 136 (157)
T ss_dssp -GG-GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--H
T ss_pred cHH-HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHH
Confidence 997 78999999999999999999988765 222 2223333333335566666543
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=123.34 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=147.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-h---cCCC-Ceee-cCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-Q---EGNL-PLYG-FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-~---~~~~-~~~~-~~s~~e~~~~l~~advIi~~ 76 (484)
.|||+|||+|.||+-+|..|+++|++|++++|++++++.+.+.++ . .++. .... ..+.+ .+...|+||+|
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~----~~~~~D~viv~ 77 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETAD----AAEPIHRLLLA 77 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcc----cccccCEEEEE
Confidence 368999999999999999999999999999999888887765421 0 0000 0000 11111 12348999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC-CHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG-SFE 150 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg-~~~ 150 (484)
|+.. +++++++.+.+.+.++++|+-.-|+.- ..+.+.+.+... |+.++++...+.-.-...+. .+..|. +.+
T Consensus 78 vK~~-~~~~al~~l~~~l~~~t~vv~lQNGv~-~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 78 CKAY-DAEPAVASLAHRLAPGAELLLLQNGLG-SQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred CCHH-hHHHHHHHHHhhCCCCCEEEEEeCCCC-CHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 9987 788999999999999999998888763 223344443321 22222221111100011122 122332 223
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHhCC
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVGK 212 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~ 212 (484)
..+++.++|+.-+-.. .+..+.-...+.|++.|... .....++.|++.++++.|
T Consensus 156 ~~~~l~~~l~~ag~~~-------~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G- 227 (305)
T PRK05708 156 TAPAWLDDLREAGIPH-------EWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCG- 227 (305)
T ss_pred chHHHHHHHHhcCCCC-------ccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcC-
Confidence 3445555665443221 22223444556666655311 134577899999999998
Q ss_pred CC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 213 LS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 213 ~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
++ .+.+.+.+........ ....++..++.+.+. ..+|.+.. +.++.|+++|+|+|.....
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gR~-----tEid~i~G---------~vvr~a~~~Gv~~P~~~~l 289 (305)
T PRK05708 228 QPAAAANLHEEVQRVIQATA-ANYSSMYQDVRAGRR-----TEISYLLG---------YACRAADRHGLPLPRLQHL 289 (305)
T ss_pred CCccHHHHHHHHHHHHHhcc-CCCcHHHHHHHcCCc-----eeehhhhh---------HHHHHHHHcCCCCchHHHH
Confidence 75 3333333322111111 112344445544321 35666655 5789999999999987653
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.7e-11 Score=119.26 Aligned_cols=196 Identities=14% Similarity=0.075 Sum_probs=127.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.++|.+|.+.|++|.+++++.++........ ++... +++++++. +|+|+++||+. ..
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~------G~~~~-s~~eaa~~---ADVVvLaVPd~-~~ 86 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD------GFEVL-TVAEAAKW---ADVIMILLPDE-VQ 86 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC------CCeeC-CHHHHHhc---CCEEEEcCCHH-HH
Confidence 6899999999999999999999999999988766544433221 24433 88888887 99999999987 45
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHh-----hhcCC-ccc-cCCC--HHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEG-----ARYGP-SLM-PGGS--FEAY 152 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~-----a~~g~-~i~-~gg~--~~~~ 152 (484)
..++ +++.+.+++|++|+.+........ +.....++..+- +|-..+..- ...|. +++ +..+ .++.
T Consensus 87 ~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~----~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~ 162 (330)
T PRK05479 87 AEVYEEEIEPNLKEGAALAFAHGFNIHFG----QIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAK 162 (330)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCChhhc----eeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHH
Confidence 8888 789999999999977766543222 122223443333 465544411 12344 444 5555 8889
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
+.+..++..+|.....-..+.+ -.+..+--|= - +..+..+...++..++.++...| .+|+..
T Consensus 163 ~~a~~l~~aiG~~~~g~~~ttf-~~e~~~dl~g-e-q~vl~gg~~~l~~~~~e~l~eaG-~~pe~A 224 (330)
T PRK05479 163 DLALAYAKGIGGTRAGVIETTF-KEETETDLFG-E-QAVLCGGLTELIKAGFETLVEAG-YQPEMA 224 (330)
T ss_pred HHHHHHHHHcCCCccceeeeee-cccccccchh-h-HHHHhhHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 9999999999975310000011 1011000000 0 12233455678888899999999 999864
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9e-12 Score=114.96 Aligned_cols=163 Identities=15% Similarity=0.150 Sum_probs=109.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
||+|+|+|.|+||.++|++|+++||+|.+-+|+.++ .+...+.... .+ ...++++.++. +|+||++||-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~----~i-~~~~~~dA~~~---aDVVvLAVP~~- 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGP----LI-TGGSNEDAAAL---ADVVVLAVPFE- 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhcc----cc-ccCChHHHHhc---CCEEEEeccHH-
Confidence 468999999999999999999999999999665554 4444333221 22 33477777777 99999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh---------------HHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY---------------ENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~---------------~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~- 141 (484)
++.+++.++...+. |+||||+++..+ ..++.+++.+... .++-+.+...-.........
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~ 150 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRD 150 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCcee
Confidence 78889999988775 999999999621 1122223333221 23333332221111111222
Q ss_pred ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhH
Q 011501 142 SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182 (484)
Q Consensus 142 ~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g 182 (484)
.+++|.|.++.+.+..+.+.+|-.. +-+|+...+
T Consensus 151 v~vagDD~~Ak~~v~~L~~~iG~~~-------ld~G~L~~a 184 (211)
T COG2085 151 VLVAGDDAEAKAVVAELAEDIGFRP-------LDAGPLENA 184 (211)
T ss_pred EEEecCcHHHHHHHHHHHHhcCcce-------eeccccccc
Confidence 5667778889999999999998664 666764433
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.1e-11 Score=113.51 Aligned_cols=193 Identities=20% Similarity=0.228 Sum_probs=129.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++|||||.|+||.+|+..|.++| .+|++.||++++.+.+.+... +..+++.+++++. +|+||++|+
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g------~~~~~~~~~~~~~---advv~LavK 71 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYG------VVTTTDNQEAVEE---ADVVFLAVK 71 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcC------CcccCcHHHHHhh---CCEEEEEeC
Confidence 368999999999999999999999 689999999999886666442 3346777888887 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC-ccccC--CCHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP-SLMPG--GSFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~-~i~~g--g~~~~~~~ 154 (484)
+. .+.+++.++.+ ..++++||..-...+ ...+.+.+. +..++- +|-. +.....|. .+..+ .+++..+.
T Consensus 72 Pq-~~~~vl~~l~~-~~~~~lvISiaAGv~--~~~l~~~l~--~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~ 143 (266)
T COG0345 72 PQ-DLEEVLSKLKP-LTKDKLVISIAAGVS--IETLERLLG--GLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAF 143 (266)
T ss_pred hH-hHHHHHHHhhc-ccCCCEEEEEeCCCC--HHHHHHHcC--CCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHH
Confidence 85 89999999988 778999998766653 333444443 333333 3532 22334555 44443 36778889
Q ss_pred HHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH-HhCCCCHHHHHHHHH
Q 011501 155 IEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK-SVGKLSNEELQQVFS 223 (484)
Q Consensus 155 v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~-~~g~~~~~~i~~~~~ 223 (484)
+..+|+.+|. ++++.+.---.++-+ .+-.-+.+.++.|++.-+. +.| ++.++..++..
T Consensus 144 v~~l~~~~G~--------v~~v~E~~~da~Tai--sGSgPAyv~~~iEal~~agv~~G-l~~~~A~~l~~ 202 (266)
T COG0345 144 VEALLSAVGK--------VVEVEESLMDAVTAL--SGSGPAYVFLFIEALADAGVRLG-LPREEARELAA 202 (266)
T ss_pred HHHHHHhcCC--------eEEechHHhhHHHHH--hcCCHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9999999996 355543111001001 1111123344455554444 556 99998888763
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-11 Score=135.15 Aligned_cols=193 Identities=16% Similarity=0.203 Sum_probs=132.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~~~ 65 (484)
..+|+|||.|.||..+|..++.+|++|.+||++++.++...+... ..+.. +++.+.+.+++ +
T Consensus 335 i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~ 413 (737)
T TIGR02441 335 VKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSGF-K 413 (737)
T ss_pred ccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-c
Confidence 358999999999999999999999999999999987665432211 11100 46666777543 4
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccC-CCCHHhhhc
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGV-SGGEEGARY 139 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv-~gg~~~a~~ 139 (484)
. +|+||.+||.+..++ +++.++.+.++++.|+...|++.+. .++++.+.. .|.||+..|- +.-.
T Consensus 414 ~---aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~ig~Hff~P~~~m~Lv----- 483 (737)
T TIGR02441 414 N---ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPI--KDIAAVSSRPEKVIGMHYFSPVDKMQLL----- 483 (737)
T ss_pred c---CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCccceEEEeccCCcccCceE-----
Confidence 3 999999999998877 5558888888888777655444432 234444432 2556654331 1111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 140 GPSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 140 g~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
=|+.| .++++++.+..+++.+++.+ +.+++ ..| ++.|.+.. ..++|++.+... | +++++
T Consensus 484 --Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----Fi~NRi~~---~~~~ea~~lv~e-G-v~~~~ 544 (737)
T TIGR02441 484 --EIITHDGTSKDTLASAVAVGLKQGKVV-------IVVKD-GPG----FYTTRCLG---PMLAEVIRLLQE-G-VDPKK 544 (737)
T ss_pred --EEeCCCCCCHHHHHHHHHHHHHCCCeE-------EEECC-cCC----chHHHHHH---HHHHHHHHHHHc-C-CCHHH
Confidence 13443 37899999999999999753 66654 444 45565553 566999999865 6 89999
Q ss_pred HHHHHHhh
Q 011501 218 LQQVFSEW 225 (484)
Q Consensus 218 i~~~~~~~ 225 (484)
|..++..+
T Consensus 545 ID~a~~~~ 552 (737)
T TIGR02441 545 LDKLTTKF 552 (737)
T ss_pred HHHHHHHc
Confidence 99986543
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=122.34 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=109.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHh-CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAE-KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++++.+.+ +|+||+|+|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~------------------~~~~~~~~v~~---aDlVilavPv~ 62 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP------------------GSLDPATLLQR---ADVLIFSAPIR 62 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc------------------ccCCHHHHhcC---CCEEEEeCCHH
Confidence 579999999 9999999999996 4899999998511 13466777776 99999999997
Q ss_pred chHHHHHHHHhhh---cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHH-hhhcCC-ccc-cCCCHHHHH
Q 011501 81 SPVDQTIKTLSVY---MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEE-GARYGP-SLM-PGGSFEAYK 153 (484)
Q Consensus 81 ~~v~~vl~~l~~~---l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~-~a~~g~-~i~-~gg~~~~~~ 153 (484)
.+.++++++.++ ++++.+|+|.++++..-.... .+.+..|++. |++|++. +...|. .++ ++...+..+
T Consensus 63 -~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~ 137 (370)
T PRK08818 63 -HTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSP 137 (370)
T ss_pred -HHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHH
Confidence 788899998876 789999999999984433332 3446679986 8887754 334555 444 444556678
Q ss_pred HHHHHHHHHhccCCCCCCceEEeCC
Q 011501 154 HIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 154 ~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
.++.+++.+|+++ +.+.+
T Consensus 138 ~v~~l~~~~Ga~v-------~~~~a 155 (370)
T PRK08818 138 WVQSLCSALQAEC-------VYATP 155 (370)
T ss_pred HHHHHHHHcCCEE-------EEcCH
Confidence 8999999999874 66655
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-10 Score=113.82 Aligned_cols=192 Identities=12% Similarity=0.103 Sum_probs=123.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|+|||+|.||.+++..|.++| ++|.+|+|++ ++.+.+..... .+..+.+..++++. +|+||+|+|
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~-----~~~~~~~~~e~~~~---aDvVilavp 73 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYP-----TVELADNEAEIFTK---CDHSFICVP 73 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcC-----CeEEeCCHHHHHhh---CCEEEEecC
Confidence 68999999999999999999998 7899999875 34444443221 13446677787776 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhhhcCC-ccccCC--CHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGARYGP-SLMPGG--SFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~ 154 (484)
+. .+.++++++.+++.++.+||...+.... .++.+.+.. ..+ --+|-. +.....|. .+..+. +++..+.
T Consensus 74 p~-~~~~vl~~l~~~l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~ 146 (277)
T PRK06928 74 PL-AVLPLLKDCAPVLTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSR 146 (277)
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHH
Confidence 75 7899999999988888888888777533 244444432 122 224533 23345566 444432 5667788
Q ss_pred HHHHHHHHhccCC---CCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 011501 155 IEDILLKVAAQVP---DSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLSNEELQQVFS 223 (484)
Q Consensus 155 v~~ll~~i~~~~~---~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~ 223 (484)
++.+|+.+|.-.. +....+.-+...|.+.. ..+.|++.- +.+.||++.++..++..
T Consensus 147 v~~l~~~~G~~~~v~E~~~d~~tal~gsgPA~~-------------~~~~~al~~a~~~~ggl~~~~a~~l~~ 206 (277)
T PRK06928 147 LEETLSHFSHVMTIREENMDIASNLTSSSPGFI-------------AAIFEEFAEAAVRNSSLSDEEAFQFLN 206 (277)
T ss_pred HHHHHHhCCCEEEEchhhCceeeeeecCHHHHH-------------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999996321 11122233332344433 222333322 23443499998888764
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.7e-11 Score=133.05 Aligned_cols=190 Identities=16% Similarity=0.214 Sum_probs=130.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|+|||+|.||..+|..++.+|++|++||++++.++...+.. ...+.. +++.+++++++ +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAGF-ER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-cC
Confidence 5899999999999999999999999999999998765432211 111000 46666777543 44
Q ss_pred cCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEecc-CCCCHHhhhcC
Q 011501 67 IQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMG-VSGGEEGARYG 140 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-v~gg~~~a~~g 140 (484)
+|+||.++|.+..++ +++.++.+.++++.++...|++.+.+ ++++.+... |.||+..| ...-.
T Consensus 393 ---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~--~la~~~~~p~r~~g~Hff~P~~~~~lV------ 461 (715)
T PRK11730 393 ---VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV------ 461 (715)
T ss_pred ---CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHH--HHHhhcCCCccEEEEecCCcccccceE------
Confidence 999999999998777 55588888888877776555554332 344444321 45555433 11111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+. ...| ++.|.+... +++|++.+.+ .| .+++++
T Consensus 462 -Evv~g~~T~~~~~~~~~~~~~~lgk~p-------v~v~-d~pG----fv~nRi~~~---~~~ea~~lv~-~G-a~~e~I 523 (715)
T PRK11730 462 -EVIRGEKTSDETIATVVAYASKMGKTP-------IVVN-DCPG----FFVNRVLFP---YFAGFSQLLR-DG-ADFRQI 523 (715)
T ss_pred -EeeCCCCCCHHHHHHHHHHHHHhCCce-------EEec-CcCc----hhHHHHHHH---HHHHHHHHHH-cC-CCHHHH
Confidence 14444 37899999999999999764 5564 3444 455666444 4589999887 46 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 524 D~a~~ 528 (715)
T PRK11730 524 DKVME 528 (715)
T ss_pred HHHHH
Confidence 99874
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-11 Score=128.71 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=107.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||..+|..|.+.|++|.+|||+... +...+. ++..+.++++++.. .+|+||+|||.. .
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~-------Gv~~~~d~~e~~~~--~aDvViLavP~~-~ 120 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSL-------GVSFFLDPHDLCER--HPDVILLCTSII-S 120 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHc-------CCEEeCCHHHHhhc--CCCEEEEcCCHH-H
Confidence 368999999999999999999999999999998543 222221 24556788886531 289999999975 7
Q ss_pred HHHHHHHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHh--hhcCC-cccc----CCCH---H
Q 011501 83 VDQTIKTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEG--ARYGP-SLMP----GGSF---E 150 (484)
Q Consensus 83 v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~--a~~g~-~i~~----gg~~---~ 150 (484)
+.++++++. +.++++.+|+|++++.......+.+.+ ..+..|+.. |+.|.+.. ...+. .++. +.++ +
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~ 199 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVS 199 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHH
Confidence 899998886 678889999999988743333333333 346778875 88877632 12233 2233 2222 3
Q ss_pred HHHHHHHHHHHHhccC
Q 011501 151 AYKHIEDILLKVAAQV 166 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~ 166 (484)
.++.++.+++.+|+++
T Consensus 200 ~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 200 RCKSFLEVFEREGCKM 215 (667)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 4566779999999874
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.8e-11 Score=132.92 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=115.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||.++++.|.++| ++|++||+++++.+.+.+.+.. .....+.+++++. +|+||+|+|..
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~-----~~~~~~~~~~~~~---aDvVilavp~~- 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVI-----DRGEEDLAEAVSG---ADVIVLAVPVL- 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCC-----CcccCCHHHHhcC---CCEEEECCCHH-
Confidence 58999999999999999999999 4899999999887776543310 1134456666665 99999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHh--------hhcCC-c-cc--cCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEG--------ARYGP-S-LM--PGGS 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~--------a~~g~-~-i~--~gg~ 148 (484)
.+.++++.+.++++++.+|+|+++++......+.+.+....++|+. .|++|++.. ...+. . +. .+++
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~ 154 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD 154 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC
Confidence 7899999999988899999999999866666666555444667765 588876531 11232 2 22 2357
Q ss_pred HHHHHHHHHHHHHHhcc
Q 011501 149 FEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~ 165 (484)
++.++.++++|+.+|.+
T Consensus 155 ~~~~~~~~~l~~~~G~~ 171 (735)
T PRK14806 155 PAALARVDRLWRAVGAD 171 (735)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 88899999999999975
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=132.35 Aligned_cols=190 Identities=15% Similarity=0.200 Sum_probs=131.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~~ 66 (484)
.+|+|||.|.||..+|..++.+|++|+++|++++.+++..+.. ...+.. +++.+.+.+++ +.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~-~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYAGF-DN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHHh-cC
Confidence 5799999999999999999999999999999998766543221 111000 45666666443 44
Q ss_pred cCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEecc-CCCCHHhhhcC
Q 011501 67 IQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMG-VSGGEEGARYG 140 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~p-v~gg~~~a~~g 140 (484)
+|+||.+||.+..++ +++.++.+.++++.|+...|++.+.+ ++++.+.. .|.||+..| ++.-.
T Consensus 393 ---aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~--~ia~~~~~p~r~ig~Hff~P~~~~~lv------ 461 (714)
T TIGR02437 393 ---VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISIS--LLAKALKRPENFCGMHFFNPVHRMPLV------ 461 (714)
T ss_pred ---CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHhhcCCcccEEEEecCCCcccCceE------
Confidence 999999999998777 55588888888887776555554333 34444432 155665433 11111
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. ..+.|++.+.+ .| .++++|
T Consensus 462 -Evv~g~~Ts~~~~~~~~~~~~~lgk~p-------v~v~d-~pG----fi~NRl~~---~~~~ea~~l~~-eG-~~~~~I 523 (714)
T TIGR02437 462 -EVIRGEKSSDETIATVVAYASKMGKTP-------IVVND-CPG----FFVNRVLF---PYFGGFSKLLR-DG-ADFVRI 523 (714)
T ss_pred -eecCCCCCCHHHHHHHHHHHHHcCCEE-------EEeCC-ccc----chHHHHHH---HHHHHHHHHHH-CC-CCHHHH
Confidence 14444 37899999999999999763 66653 445 45566654 44589999986 46 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 524 D~a~~ 528 (714)
T TIGR02437 524 DKVME 528 (714)
T ss_pred HHHHH
Confidence 99874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-11 Score=131.38 Aligned_cols=191 Identities=16% Similarity=0.190 Sum_probs=128.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHh-------hhcCC----------CCeeecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KQEGN----------LPLYGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~----------~~~~~~~s~~e~~~ 65 (484)
++|+|||+|.||..+|..++ .+|++|++||++++.++...+.. ...+. .+++.++++++ ++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYRG-FK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChHH-hc
Confidence 58999999999999999998 58999999999998655433211 00000 04666677754 34
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g 140 (484)
. +|+||.++|.+..++ +++.++...++++.|+...|++.+.+ ++++.+... |.||+..|..-.-.
T Consensus 384 ~---adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~~g~HffnP~~~~~lV----- 453 (699)
T TIGR02440 384 D---VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIG--QIAAAASRPENVIGLHYFSPVEKMPLV----- 453 (699)
T ss_pred c---CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHhcCCcccEEEEecCCccccCceE-----
Confidence 4 999999999997777 45588888887777666554444332 344444322 45555443111100
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. .+++|++.+.+ .| ++++++
T Consensus 454 -Evv~g~~T~~~~~~~~~~~~~~~gk~p-------v~v~d-~pG----fi~nRl~~---~~~~Ea~~l~~-~G-~~~~dI 515 (699)
T TIGR02440 454 -EVIPHAGTSEQTIATTVALAKKQGKTP-------IVVAD-KAG----FYVNRILA---PYMNEAARLLL-EG-EPVEHI 515 (699)
T ss_pred -EEeCCCCCCHHHHHHHHHHHHHcCCeE-------EEEcc-ccc----hHHHHHHH---HHHHHHHHHHH-CC-CCHHHH
Confidence 14444 37899999999999999764 66643 445 44555544 45699999987 56 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 516 D~a~~ 520 (699)
T TIGR02440 516 DKALV 520 (699)
T ss_pred HHHHH
Confidence 98874
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.8e-12 Score=115.39 Aligned_cols=147 Identities=16% Similarity=0.306 Sum_probs=96.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-------cCCC----------CeeecCCHhHHHhhc
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-------EGNL----------PLYGFHDPESFVHSI 67 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-------~~~~----------~~~~~~s~~e~~~~l 67 (484)
||+|||+|.||.++|..++.+|++|.+||++++..+...+.... .+.. ++...+++++++ .
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~- 78 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D- 78 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T-
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h-
Confidence 69999999999999999999999999999999876554432111 1111 577888998888 5
Q ss_pred CCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--c--CCeEEeccCCCCHHhhhcCC-
Q 011501 68 QKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--L--GLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~pv~gg~~~a~~g~- 141 (484)
+|+||-++|....++ +++.++...++++.+|...|++.+. .++++.+.. + |+||+..|-. -+
T Consensus 79 --adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~--------~~l 146 (180)
T PF02737_consen 79 --ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHL--------MPL 146 (180)
T ss_dssp --ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT----------E
T ss_pred --hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEeccccccc--------Cce
Confidence 999999999987777 4558888888888887766665532 234443322 1 5666643311 11
Q ss_pred -ccccC--CCHHHHHHHHHHHHHHhcc
Q 011501 142 -SLMPG--GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 142 -~i~~g--g~~~~~~~v~~ll~~i~~~ 165 (484)
=++.| .++++++.+..+++.+++.
T Consensus 147 VEvv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 147 VEVVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp EEEEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 14444 3889999999999999865
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.4e-10 Score=108.01 Aligned_cols=187 Identities=15% Similarity=0.150 Sum_probs=118.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|..|||+|||+|.||.+++..|.++|. +++++||++++. ......++.++++. +|+||+|
T Consensus 1 ~~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~---~D~Vila 64 (260)
T PTZ00431 1 MENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------PFVYLQSNEELAKT---CDIIVLA 64 (260)
T ss_pred CCCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------CeEEeCChHHHHHh---CCEEEEE
Confidence 666899999999999999999999872 499999986541 12345677787776 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEeccCCCCHHhhhcCC-ccccC--CCHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLGMGVSGGEEGARYGP-SLMPG--GSFEA 151 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pv~gg~~~a~~g~-~i~~g--g~~~~ 151 (484)
+|+. ++++++.++.+++.++.+|.++++......++. +... -++++ | +-+.....|. .+..+ .+++.
T Consensus 65 vkp~-~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~m--P--n~p~~~g~g~t~i~~~~~~~~~~ 136 (260)
T PTZ00431 65 VKPD-LAGKVLLEIKPYLGSKLLISICGGLNLKTLEEM---VGVEAKIVRVM--P--NTPSLVGQGSLVFCANNNVDSTD 136 (260)
T ss_pred eCHH-HHHHHHHHHHhhccCCEEEEEeCCccHHHHHHH---cCCCCeEEEEC--C--CchhHhcceeEEEEeCCCCCHHH
Confidence 9876 899999999988876666777777764433322 2211 12222 2 1223334555 33332 25677
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCc--hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGKG--GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~~--g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
.+.++.+|+.+|.- +.+.+. -....+--.--++.+..+..+.++ +.+.| ++.++..++..
T Consensus 137 ~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~G-l~~~~a~~l~~ 198 (260)
T PTZ00431 137 KKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNG-LNRDVSKNLVL 198 (260)
T ss_pred HHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 88999999999963 333221 000000001122333333344443 34566 99999888764
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-12 Score=108.28 Aligned_cols=110 Identities=16% Similarity=0.304 Sum_probs=75.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+||+|||.|++|..|++.|.++||.|.. |+|+++..+++..... -..+.++.|+++. +|++|++||++ +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~------~~~~~~~~~~~~~---aDlv~iavpDd-a 80 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG------AGAILDLEEILRD---ADLVFIAVPDD-A 80 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T------T-----TTGGGCC----SEEEE-S-CC-H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc------ccccccccccccc---CCEEEEEechH-H
Confidence 6899999999999999999999999875 5899877777665432 1344567777766 99999999998 8
Q ss_pred HHHHHHHHhhh--cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 83 VDQTIKTLSVY--MEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 83 v~~vl~~l~~~--l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++.++|... ..+|++|++||.....+. .+.+.++|....
T Consensus 81 I~~va~~La~~~~~~~g~iVvHtSGa~~~~v---L~p~~~~Ga~~~ 123 (127)
T PF10727_consen 81 IAEVAEQLAQYGAWRPGQIVVHTSGALGSDV---LAPARERGAIVA 123 (127)
T ss_dssp HHHHHHHHHCC--S-TT-EEEES-SS--GGG---GHHHHHTT-EEE
T ss_pred HHHHHHHHHHhccCCCCcEEEECCCCChHHh---hhhHHHCCCeEE
Confidence 99999999987 789999999999876554 344556666443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.7e-11 Score=129.73 Aligned_cols=191 Identities=18% Similarity=0.216 Sum_probs=128.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHh-------hhcCCC----------CeeecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERA-------KQEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~~----------~~~~~~s~~e~~~ 65 (484)
.+|+|||+|.||.++|..++ .+|++|++||++++.++...+.. ...+.. +++.+++.++ ++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYRG-FK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChHH-hc
Confidence 58999999999999999999 88999999999998655532211 000000 4666667643 34
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g 140 (484)
. +|+||.++|.+..++ +++.++...++++.++...|++.+.+ ++++.+... |.||+..|-.-. -
T Consensus 389 ~---aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~--~la~~~~~p~r~ig~Hff~P~~~~~------l 457 (708)
T PRK11154 389 H---ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIG--QIAAAAARPEQVIGLHYFSPVEKMP------L 457 (708)
T ss_pred c---CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH--HHHHhcCcccceEEEecCCccccCc------e
Confidence 4 999999999987777 45588888888888776655554333 344444322 455554331100 0
Q ss_pred CccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 141 PSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 141 ~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
.=|+.| .++++++.+..+++.+++.+ +.+.+ ..| ++.|.+.. .+++|++.++++ | ++++++
T Consensus 458 VEvv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~d-~pG----fi~nRl~~---~~~~EA~~lv~e-G-v~~~dI 520 (708)
T PRK11154 458 VEVIPHAKTSAETIATTVALAKKQGKTP-------IVVRD-GAG----FYVNRILA---PYINEAARLLLE-G-EPIEHI 520 (708)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHcCCce-------EEEec-cCc----HHHHHHHH---HHHHHHHHHHHc-C-CCHHHH
Confidence 024444 38899999999999998753 55543 445 44455543 555999999886 6 899999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
..++.
T Consensus 521 D~a~~ 525 (708)
T PRK11154 521 DAALV 525 (708)
T ss_pred HHHHH
Confidence 88864
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.8e-10 Score=111.94 Aligned_cols=254 Identities=15% Similarity=0.177 Sum_probs=154.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC-CCC----eeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLP----LYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~-~~~----~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||.|+|+|.||+-++..|+++|++|+++.|++. ++++++.+-.-. ..+ .....+..+ .+..+|+||++|+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~---~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAE---ALGPADLVIVTVK 76 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChh---hcCCCCEEEEEec
Confidence 5899999999999999999999999999998876 777776532100 001 001111112 2234999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHh--hhcCC-c--cccCCCH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEG--ARYGP-S--LMPGGSF 149 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~--a~~g~-~--i~~gg~~ 149 (484)
+. +++++++.+.+.+.+.+.|+-.-|+. ...+.+.+.+... |+.+.++--.+.... ...|. . .+.|+++
T Consensus 77 a~-q~~~al~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 77 AY-QLEEALPSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cc-cHHHHHHHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 98 89999999999999999888888876 3444454444433 222332221111111 11233 2 2345566
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHH---------------------HHHHHHHhHHHHHHHHHH
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHN---------------------GIEYGDMQLIAEAYDVLK 208 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N---------------------~i~~~~~~~~~Ea~~l~~ 208 (484)
+.++.+..+|+.-+-+. .+..+.-.....|++-| .......+++.|...+++
T Consensus 155 ~~~~~i~~~~~~a~~~~-------~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~ 227 (307)
T COG1893 155 ELVKALAELFKEAGLEV-------ELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVAR 227 (307)
T ss_pred HHHHHHHHHHHhCCCCe-------EEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHH
Confidence 77788888776655432 23333455555666555 233445677889999999
Q ss_pred HhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 209 SVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 209 ~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
+.| +. .+.+.+++....... .....++..+....+ .-.+|.|.. ..++.|+++|+++|+...
T Consensus 228 ~~g-~~~~~~~~~~v~~~~~~~~-~~~~sSM~qDl~~gr-----~tEid~i~G---------~vv~~a~~~gi~~P~~~~ 291 (307)
T COG1893 228 AEG-VELPEEVVERVLAVIRATD-AENYSSMLQDLEKGR-----PTEIDAING---------AVVRLAKKHGLATPVNDT 291 (307)
T ss_pred hcc-CCCCHHHHHHHHHHHHhcc-cccCchHHHHHHcCC-----cccHHHHhh---------HHHHHHHHhCCCCcHHHH
Confidence 887 54 433333332212221 112223334443322 135677755 478999999999998764
|
|
| >KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.6e-09 Score=99.65 Aligned_cols=239 Identities=13% Similarity=0.151 Sum_probs=163.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhh---c---------CCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQ---E---------GNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~e~~~~l~ 68 (484)
|+||+.||+|.+|.+-+..++-+. .+|+++|.+..++.++...... . .+-++-..++.+..+.+
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e-- 78 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE-- 78 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh--
Confidence 368999999999999887777553 5789999998887655421000 0 01145567788888877
Q ss_pred CCcEEEEecCCCc--------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH--HcCCeE--EeccC
Q 011501 69 KPRVIIMLVKAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA--ELGLLY--LGMGV 130 (484)
Q Consensus 69 ~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g~~~--i~~pv 130 (484)
+|+||++|.++. -+++....++......+||+..||++...++.+.+.+. .+|++| +..|-
T Consensus 79 -adlvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpe 157 (481)
T KOG2666|consen 79 -ADLVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPE 157 (481)
T ss_pred -cceEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChH
Confidence 999999996652 23445566666667789999999999999988888775 346655 55564
Q ss_pred CCCHHhh---hcCC-ccccCCC--HHHHHH---HHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHH
Q 011501 131 SGGEEGA---RYGP-SLMPGGS--FEAYKH---IEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIA 201 (484)
Q Consensus 131 ~gg~~~a---~~g~-~i~~gg~--~~~~~~---v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~ 201 (484)
+-.+..| ...| .++.||+ ++-+.. +..+++.+-.+- -+...+.-+++..|++.|++.+--+..++
T Consensus 158 flaegtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~------~iittntwsselsklaanaflaqrissin 231 (481)
T KOG2666|consen 158 FLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPRE------QIITTNTWSSELSKLAANAFLAQRISSIN 231 (481)
T ss_pred HhcccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCccc------ceeeccccHHHHHHHHHHHHHHHHHhhhH
Confidence 4333222 2345 6788884 444444 445555554321 24445679999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhh
Q 011501 202 EAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDK 260 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~ 260 (484)
-+.++|++.| .+..++..++. +-.++....|...-.|++.+.-+.++..
T Consensus 232 s~salceatg-adv~eva~avg---------~d~rig~kfl~asvgfggscfqkdilnl 280 (481)
T KOG2666|consen 232 SMSALCEATG-ADVSEVAYAVG---------TDSRIGSKFLNASVGFGGSCFQKDILNL 280 (481)
T ss_pred HHHHHHHhcC-CCHHHHHHHhc---------ccccccHHHhhcccCcCchhHHHHHHHH
Confidence 9999999999 99988877652 1123333444444457776666655553
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.4e-10 Score=111.40 Aligned_cols=115 Identities=18% Similarity=0.147 Sum_probs=93.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+++|+.|...|++|.+||++++....+ .....+++++++. +|+|++++|...++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~-----------~~~~~~l~ell~~---aDiVil~lP~t~~t 212 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF-----------LTYKDSVKEAIKD---ADIISLHVPANKES 212 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh-----------hhccCCHHHHHhc---CCEEEEeCCCcHHH
Confidence 589999999999999999999999999999997653221 1234688888887 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..++ +++.+.+++|.++|+++.+..-+...+.+.+.+..+.....-|+-
T Consensus 213 ~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 213 YHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred HHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 7776 677888999999999999998899899988887655444333443
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.6e-10 Score=112.60 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=93.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|++|...|.+|.+|||++...+..... ++....+++++++. +|+|++++|...++
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 262 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL-------GLTYHVSFDSLVSV---CDVVTIHCPLHPET 262 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc-------CceecCCHHHHhhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999986432222111 24556789999887 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ ++.+..+++|.++|+++....-+...+.+.+.+..+..
T Consensus 263 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~G 305 (385)
T PRK07574 263 EHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAG 305 (385)
T ss_pred HHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccE
Confidence 9998 56888899999999999999999999999998765543
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=99.08 E-value=8e-09 Score=96.95 Aligned_cols=128 Identities=23% Similarity=0.286 Sum_probs=89.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|+|+|+|.||..+|+.|.+.|++|+++|+++++++.+.+... .... +.+++... .+|+++.|...+.-
T Consensus 28 gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g------~~~v-~~~~l~~~--~~Dv~vp~A~~~~I 98 (200)
T cd01075 28 GKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFG------ATVV-APEEIYSV--DADVFAPCALGGVI 98 (200)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-cchhhccc--cCCEEEeccccccc
Confidence 368999999999999999999999999999999988887766421 2333 33455442 39999977655433
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccC-CCCHHhhhcCCccccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGV-SGGEEGARYGPSLMPGGS 148 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv-~gg~~~a~~g~~i~~gg~ 148 (484)
.++.+ +.+ +.++|++..|....+ .+..+.+.++|+.|++ .-. +||. ..+...++++.
T Consensus 99 ~~~~~----~~l-~~~~v~~~AN~~~~~-~~~~~~L~~~Gi~~~Pd~~~NaGGv---~~~~~e~~~~~ 157 (200)
T cd01075 99 NDDTI----PQL-KAKAIAGAANNQLAD-PRHGQMLHERGILYAPDYVVNAGGL---INVADELYGGN 157 (200)
T ss_pred CHHHH----HHc-CCCEEEECCcCccCC-HhHHHHHHHCCCEEeCceeeeCcCc---eeehhHHhCCc
Confidence 33333 334 467999999987544 5678889999999988 333 4432 22223455554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.5e-09 Score=111.18 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=96.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|.+|.+||+++...+..... ++....++++++.. +|+|++++|...++
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---sDvV~l~lPlt~~T 269 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET-------GAKFEEDLDAMLPK---CDVVVINTPLTEKT 269 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhc-------CceecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 589999999999999999999999999999986433322221 24456789999987 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+.++ .+++..+++|.++|+++....-+...+.+.+++..+.....-|+
T Consensus 270 ~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~ 318 (386)
T PLN03139 270 RGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVW 318 (386)
T ss_pred HHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCC
Confidence 9988 57888899999999999999999999999988765543333333
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-08 Score=101.27 Aligned_cols=243 Identities=16% Similarity=0.205 Sum_probs=137.5
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cCCC---CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHH
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ----EGNL---PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQT 86 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~~~---~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 86 (484)
||..+|..|+++|++|++++|+ +..+.+.+.+.. .++. .+...+++++ +..+|+||++|+.. +++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~----~~~~D~iiv~vKs~-~~~~~ 75 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE----LPPADLVIITVKAY-QTEEA 75 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh----cCCCCEEEEeccch-hHHHH
Confidence 7999999999999999999997 666666554311 0000 0111223333 23489999999997 78999
Q ss_pred HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCC---CHHHHHHHHHH
Q 011501 87 IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGG---SFEAYKHIEDI 158 (484)
Q Consensus 87 l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg---~~~~~~~v~~l 158 (484)
++.+.+.+.++.+|+...|+. ...+.+.+.+... |+.++++-..+.......+. .+..|. ..+..+.+..+
T Consensus 76 l~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~ 154 (293)
T TIGR00745 76 AALLLPLIGKNTKVLFLQNGL-GHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAEL 154 (293)
T ss_pred HHHhHhhcCCCCEEEEccCCC-CCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHH
Confidence 999999998889998888875 2233344444322 12222222221111111122 233333 12344555556
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHH---------------------HHHHHHhHHHHHHHHHHHhCCCC--H
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------------IEYGDMQLIAEAYDVLKSVGKLS--N 215 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------------i~~~~~~~~~Ea~~l~~~~g~~~--~ 215 (484)
|+..+-+ +....+.-...+.|++.|. .......++.|+..++++.| ++ .
T Consensus 155 l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G-~~~~~ 226 (293)
T TIGR00745 155 LNEAGIP-------AELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEG-VDLPD 226 (293)
T ss_pred HHhCCCC-------CEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCC-CCCCH
Confidence 6554422 1223334444455555442 23445567899999999988 75 4
Q ss_pred HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 216 EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
+.+.+.+.........+ ..++..++...+ ...+|.+.. +.++.|+++|+|+|....
T Consensus 227 ~~~~~~~~~~~~~~~~~-~sSm~~D~~~gr-----~tEid~i~G---------~~v~~a~~~gv~~P~~~~ 282 (293)
T TIGR00745 227 DEVEELVRAVIRMTAEN-TSSMLQDLLRGR-----RTEIDAING---------AVVRLAEKLGIDAPVNRT 282 (293)
T ss_pred HHHHHHHHHHHhcCCCC-CChHHHHHHcCC-----cchHHHhcc---------HHHHHHHHcCCCCChHHH
Confidence 44444443322211111 123333443322 135666655 578999999999998764
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.9e-10 Score=98.90 Aligned_cols=118 Identities=22% Similarity=0.221 Sum_probs=86.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||+|.||..++..|.+.| ++|+++||++++.+++.+...... ......+.+++++. +|+||+|+|.+.
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG--IAIAYLDLEELLAE---ADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc--cceeecchhhcccc---CCEEEeCcCCCC
Confidence 368999999999999999999996 789999999998888776543100 00123456665555 999999999985
Q ss_pred h-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 P-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+ ++.+... ...++++.+++|+++.++. + .+.+.+++.|+.|++.
T Consensus 94 ~~~~~~~~~-~~~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g~~~v~g 138 (155)
T cd01065 94 KPGDELPLP-PSLLKPGGVVYDVVYNPLE-T-PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCCCCCCC-HHHcCCCCEEEEcCcCCCC-C-HHHHHHHHCCCceeCC
Confidence 4 2222111 1236789999999988544 4 7778888888887764
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.8e-09 Score=109.20 Aligned_cols=110 Identities=18% Similarity=0.178 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+|||++.... .... +.. ..++++++++ +|+|++++|...++
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------~~~-~~~l~ell~~---aDiV~l~lP~t~~T 218 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL-------GAE-YRPLEELLRE---SDFVSLHVPLTKET 218 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc-------CCE-ecCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999875432 1111 122 3588898887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ .+.+..+++|.++|++++...-+...+.+.+.+..+..
T Consensus 219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~g 261 (333)
T PRK13243 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAG 261 (333)
T ss_pred hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEE
Confidence 8888 67888899999999999999999999999887754443
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.5e-08 Score=101.49 Aligned_cols=148 Identities=13% Similarity=0.068 Sum_probs=98.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
-++|||||+|+||.++|++|.+.|++|+++++. +++.+.+.+. ++.. .+..++++. +|+|+++||+..
T Consensus 3 ~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~-------Gv~~-~s~~ea~~~---ADiVvLaVpp~~ 71 (314)
T TIGR00465 3 GKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATED-------GFKV-GTVEEAIPQ---ADLIMNLLPDEV 71 (314)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHC-------CCEE-CCHHHHHhc---CCEEEEeCCcHh
Confidence 468999999999999999999999998876654 3444444432 2443 357787777 999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe-EEeccCCCCHHh---h--hcCC-ccc-cCC--CHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL-YLGMGVSGGEEG---A--RYGP-SLM-PGG--SFEA 151 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~~pv~gg~~~---a--~~g~-~i~-~gg--~~~~ 151 (484)
+...+.+++.+.++++.+|.-...... ......+ ..+.. +.-+|-..+... . ..|. +++ ++. +.+.
T Consensus 72 ~~~~v~~ei~~~l~~g~iVs~aaG~~i---~~~~~~~-~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~ 147 (314)
T TIGR00465 72 QHEVYEAEIQPLLKEGKTLGFSHGFNI---HFVQIVP-PKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEA 147 (314)
T ss_pred HHHHHHHHHHhhCCCCcEEEEeCCccH---hhccccC-CCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHH
Confidence 677777889898888875444444332 1222222 22333 344675555420 1 2444 443 333 6678
Q ss_pred HHHHHHHHHHHhcc
Q 011501 152 YKHIEDILLKVAAQ 165 (484)
Q Consensus 152 ~~~v~~ll~~i~~~ 165 (484)
.+.+..++..+|..
T Consensus 148 ~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 148 MAIALAYAKAIGGG 161 (314)
T ss_pred HHHHHHHHHHcCCC
Confidence 88999999999964
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.8e-09 Score=97.40 Aligned_cols=198 Identities=17% Similarity=0.266 Sum_probs=132.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-----------HhhhcCCC-------CeeecCCHhH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-----------RAKQEGNL-------PLYGFHDPES 62 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-----------~~~~~~~~-------~~~~~~s~~e 62 (484)
|+.-||||+|.|.+|+.+|..++..||+|..||..++.+....+ .+.-.|++ .+..+++++|
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E 80 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNE 80 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHH
Confidence 77779999999999999999999999999999999875443322 11111111 3567889999
Q ss_pred HHhhcCCCcEEEEecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC
Q 011501 63 FVHSIQKPRVIIMLVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP 141 (484)
Q Consensus 63 ~~~~l~~advIi~~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~ 141 (484)
+++. +=.|-.|+|.+-.++.-+ +++-..+ ...+|+..||+...-+ ....-+..+.-..+..||...- .=|
T Consensus 81 ~vk~---Ai~iQEcvpE~L~lkk~ly~qlD~i~-d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy----fiP 151 (313)
T KOG2305|consen 81 LVKG---AIHIQECVPEDLNLKKQLYKQLDEIA-DPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY----FIP 151 (313)
T ss_pred HHhh---hhhHHhhchHhhHHHHHHHHHHHHhc-CCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc----ccc
Confidence 9997 777888999987777555 4444444 4566666666654333 2333343333345555654221 111
Q ss_pred --ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 142 --SLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 142 --~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
-+++. ..++.+++.+.+++.+|.++ +.+-.+. -| .+.|.+.+++ ++|.+.|....+ ++..+
T Consensus 152 LvElVPaPwTsp~tVdrt~~lM~sigq~p------V~l~rei-~G----f~lnriq~Ai---lne~wrLvasGi-l~v~d 216 (313)
T KOG2305|consen 152 LVELVPAPWTSPDTVDRTRALMRSIGQEP------VTLKREI-LG----FALNRIQYAI---LNETWRLVASGI-LNVND 216 (313)
T ss_pred hheeccCCCCChhHHHHHHHHHHHhCCCC------ccccccc-cc----ceeccccHHH---HHHHHHHHHccC-cchhh
Confidence 12332 47889999999999999764 3333332 23 3346666554 599999998776 99888
Q ss_pred HHHHH
Q 011501 218 LQQVF 222 (484)
Q Consensus 218 i~~~~ 222 (484)
+..++
T Consensus 217 vD~Vm 221 (313)
T KOG2305|consen 217 VDAVM 221 (313)
T ss_pred HHHHH
Confidence 88776
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.02 E-value=6e-09 Score=101.84 Aligned_cols=138 Identities=20% Similarity=0.342 Sum_probs=94.9
Q ss_pred HHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcC
Q 011501 18 LALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYME 95 (484)
Q Consensus 18 lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~ 95 (484)
+|+.|.++| ++|++||++++..+...+.+.. .....+ .+.+.. +|+||+|||.. .+.++++++.++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~-----~~~~~~-~~~~~~---~DlvvlavP~~-~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGII-----DEASTD-IEAVED---ADLVVLAVPVS-AIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSS-----SEEESH-HHHGGC---CSEEEE-S-HH-HHHHHHHHHHCGS-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCe-----eeccCC-HhHhcC---CCEEEEcCCHH-HHHHHHHHhhhhcC
Confidence 578899999 6899999999988777665431 122333 455665 99999999987 78999999999999
Q ss_pred CCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCH----H----hhhcCC-ccc-cCC--CHHHHHHHHHHHHHH
Q 011501 96 KGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGE----E----GARYGP-SLM-PGG--SFEAYKHIEDILLKV 162 (484)
Q Consensus 96 ~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~----~----~a~~g~-~i~-~gg--~~~~~~~v~~ll~~i 162 (484)
+|.+|+|.++++-.....+.+.+. .++.|++. |+.|.+ . .-..|. .++ ++. +++.++.++.+++.+
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~ 149 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEAL 149 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHC
Confidence 999999999998666655555444 67899986 777762 1 122444 333 333 568899999999999
Q ss_pred hccC
Q 011501 163 AAQV 166 (484)
Q Consensus 163 ~~~~ 166 (484)
|+++
T Consensus 150 Ga~~ 153 (258)
T PF02153_consen 150 GARV 153 (258)
T ss_dssp T-EE
T ss_pred CCEE
Confidence 9874
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=98.40 Aligned_cols=195 Identities=15% Similarity=0.186 Sum_probs=125.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-------cCC---------C------CeeecCCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-------EGN---------L------PLYGFHDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-------~~~---------~------~~~~~~s~ 60 (484)
++.|+|||.|.||+++|+.-+..|++|.++|++++.+.+..+...+ .+. + +++.+++.
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv 90 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNV 90 (298)
T ss_pred ccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCH
Confidence 3579999999999999999999999999999999876655432111 000 0 24456667
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEec-cCCCCH
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGM-GVSGGE 134 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~-pv~gg~ 134 (484)
.+++.. +|+||.++-....++.- +..+-...++ +.|+-+.|++..-+ +++..++. .|.||+.. ||+--.
T Consensus 91 ~~~v~d---adliiEAivEn~diK~~lF~~l~~~ak~-~~il~tNTSSl~lt-~ia~~~~~~srf~GlHFfNPvPvMKLv 165 (298)
T KOG2304|consen 91 SDAVSD---ADLIIEAIVENLDIKRKLFKDLDKIAKS-STILATNTSSLSLT-DIASATQRPSRFAGLHFFNPVPVMKLV 165 (298)
T ss_pred HHhhhh---hHHHHHHHHHhHHHHHHHHHHHHhhccc-ceEEeecccceeHH-HHHhhccChhhhceeeccCCchhHHHh
Confidence 777766 88888887666555533 3455444444 45555555543333 33333332 27888875 555443
Q ss_pred HhhhcCCccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 135 EGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 135 ~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
+..+.. -.+++.+..+..+-+.+|+.. +-+- .-.| .+.|.+. +-.+.|++++.++.. .+
T Consensus 166 EVir~~-----~TS~eTf~~l~~f~k~~gKtt-------Vack-DtpG----FIVNRlL---iPyl~ea~r~yerGd-As 224 (298)
T KOG2304|consen 166 EVIRTD-----DTSDETFNALVDFGKAVGKTT-------VACK-DTPG----FIVNRLL---IPYLMEAIRMYERGD-AS 224 (298)
T ss_pred hhhcCC-----CCCHHHHHHHHHHHHHhCCCc-------eeec-CCCc----hhhhHHH---HHHHHHHHHHHHhcC-Cc
Confidence 322211 126788888888888888653 3332 2333 4455543 455689999999987 99
Q ss_pred HHHHHHHHH
Q 011501 215 NEELQQVFS 223 (484)
Q Consensus 215 ~~~i~~~~~ 223 (484)
.++|...++
T Consensus 225 keDIDtaMk 233 (298)
T KOG2304|consen 225 KEDIDTAMK 233 (298)
T ss_pred HhhHHHHHh
Confidence 999988873
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=106.87 Aligned_cols=109 Identities=13% Similarity=0.083 Sum_probs=88.9
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|||||+|.||..+|+.|+ ..|.+|.+||+++... ... . +....+++++++. +|+|++++|....
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~--~~~-~-------~~~~~~l~ell~~---aDvIvl~lP~t~~ 213 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAK--AAT-Y-------VDYKDTIEEAVEG---ADIVTLHMPATKY 213 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHh--HHh-h-------ccccCCHHHHHHh---CCEEEEeCCCCcc
Confidence 68999999999999999994 4688999999987542 111 1 3345689999887 9999999999877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.+.++ .++.+.+++|.++|++|++...++..+.+.+.+..+..
T Consensus 214 t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~g 257 (332)
T PRK08605 214 NHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKG 257 (332)
T ss_pred hhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeE
Confidence 77665 46778899999999999999999999999987755443
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=106.16 Aligned_cols=113 Identities=16% Similarity=0.206 Sum_probs=91.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.+...|++|.+|||+... .+. .....+++++++. +|+|++++|...++
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~------~~~~~~l~ell~~---aDiv~~~lp~t~~T 187 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGI------SSIYMEPEDIMKK---SDFVLISLPLTDET 187 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCc------ccccCCHHHHHhh---CCEEEECCCCCchh
Confidence 58999999999999999888889999999998432 111 1124588998887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+.++ .+.+..+++|.++|++|.....+...+.+.+.+..+.....-|+
T Consensus 188 ~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 188 RGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 8888 56778899999999999999999999999988764544333333
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=107.42 Aligned_cols=111 Identities=18% Similarity=0.259 Sum_probs=90.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|++|...|++|.+||++++....+.. .....+++++++. +|+|++++|...++
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~---------~~~~~~l~e~l~~---aDvvv~~lPlt~~T 204 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS---------FAGREELSAFLSQ---TRVLINLLPNTPET 204 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee---------ecccccHHHHHhc---CCEEEECCCCCHHH
Confidence 58999999999999999999999999999997654221110 1123477888877 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 205 ~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ga 248 (312)
T PRK15469 205 VGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGA 248 (312)
T ss_pred HHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeE
Confidence 9888 467888999999999999998888889888887655433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.2e-09 Score=97.85 Aligned_cols=110 Identities=11% Similarity=0.216 Sum_probs=88.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.|..-|.+|++|||+..........+ + ...+++++++. +|+|++++|...++
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~-------~-~~~~l~ell~~---aDiv~~~~plt~~T 105 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFG-------V-EYVSLDELLAQ---ADIVSLHLPLTPET 105 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTT-------E-EESSHHHHHHH----SEEEE-SSSSTTT
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccccc-------c-eeeehhhhcch---hhhhhhhhcccccc
Confidence 5899999999999999999999999999999988655333221 3 45699999998 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.+..+++|.++|+++....-+...+.+.+++..+.
T Consensus 106 ~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 106 RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7777 6777889999999999999888888888888775444
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-08 Score=99.65 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=87.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.++||||||+|.||..++.+|.+. +++|. +|||++++.+++.+... ....+.+++++... +|+|++|+
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g-----~~~~~~~~eell~~---~D~Vvi~t 75 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLR-----RPPPVVPLDQLATH---ADIVVEAA 75 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcC-----CCcccCCHHHHhcC---CCEEEECC
Confidence 4457999999999999999999873 67765 88999998877765432 12456789998766 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
|... ..++.... ++.|+.|+..+.......+++.+.+++.|..+ +..+-.++
T Consensus 76 p~~~-h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 76 PASV-LRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred CcHH-HHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 9874 44444444 34666566666655556778888888888765 54444444
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8e-09 Score=102.01 Aligned_cols=193 Identities=12% Similarity=0.056 Sum_probs=112.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.++|++|...|++|++||+.....+.+...+ +.. .+++++++. +|+|++++|++ ..
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G-------~~v-~sl~Eaak~---ADVV~llLPd~-~t 84 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADG-------FEV-MSVSEAVRT---AQVVQMLLPDE-QQ 84 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcC-------CEE-CCHHHHHhc---CCEEEEeCCCh-HH
Confidence 5899999999999999999999999999997644333332222 333 489999988 99999999986 45
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHHhh---hcC--C-ccc-c--CCCHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEEGA---RYG--P-SLM-P--GGSFEAY 152 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~~a---~~g--~-~i~-~--gg~~~~~ 152 (484)
..++ +++++.+++|.+++-.-.-+. ........+++.. +-+|=..|.... ..| . +++ + --+-.+.
T Consensus 85 ~~V~~~eil~~MK~GaiL~f~hgfni----~~~~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~ 160 (335)
T PRK13403 85 AHVYKAEVEENLREGQMLLFSHGFNI----HFGQINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTAL 160 (335)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCcce----ecCceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHH
Confidence 7777 579999999998776543321 1111223345543 335544443221 122 2 222 1 1122355
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHH-H-HHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKM-I-HNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~-v-~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
+.+..+-..+|..- -.++-.. -..=...-+ - +..+-.+..+++--.+..+.+.| .+|+..
T Consensus 161 ~~ala~a~~iG~~r----agv~~tt-f~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaG-y~pe~A 222 (335)
T PRK13403 161 HVALAYAKGVGCTR----AGVIETT-FQEETETDLFGEQAVLCGGVTALVKAGFETLTEGG-YRPEIA 222 (335)
T ss_pred HHHHHHHHHcCCCc----eeEEecc-hHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 66666667776531 0011000 000000000 0 11233455566666777777787 888753
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-08 Score=107.62 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=91.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+||+.... +..... ++...++++++++. +|+|++++|...++
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDvV~l~lPlt~~T 207 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQL-------GVELVDDLDELLAR---ADFITVHTPLTPET 207 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEcCCHHHHHhh---CCEEEEccCCChhh
Confidence 58999999999999999999999999999986322 111111 24455689999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ .+.+..+++|.++|+++....-+...+.+.+.+..+..
T Consensus 208 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~g 250 (525)
T TIGR01327 208 RGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRA 250 (525)
T ss_pred ccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeE
Confidence 8888 56777899999999999999999999999998765543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-08 Score=94.08 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=110.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|||||.|.||.-+|..|.++||.|.++||+. ...+.+..+ ...++.+.++++. .+|+|++|+... .+
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg------~~~ft~lhdlcer--hpDvvLlctsil-si 121 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYG------SAKFTLLHDLCER--HPDVVLLCTSIL-SI 121 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhc------ccccccHHHHHhc--CCCEEEEEehhh-hH
Confidence 379999999999999999999999999999986 455555433 3457788888875 599999999775 78
Q ss_pred HHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC--ccc----cCCC----HHH
Q 011501 84 DQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP--SLM----PGGS----FEA 151 (484)
Q Consensus 84 ~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~--~i~----~gg~----~~~ 151 (484)
+.++...-+. ++.|++++|..+..-.......+.+. +.+..+.+ |+.|.......+. .++ -.|+ ++.
T Consensus 122 ekilatypfqrlrrgtlfvdvlSvKefek~lfekYLP-kdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~er 200 (480)
T KOG2380|consen 122 EKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLP-KDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPER 200 (480)
T ss_pred HHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCc-cccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHH
Confidence 8888777765 88999999999887555545555544 45666665 6665542332222 222 2343 778
Q ss_pred HHHHHHHHHHHhccC
Q 011501 152 YKHIEDILLKVAAQV 166 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~ 166 (484)
++.+.++|...+.+.
T Consensus 201 cE~fleIf~cegckm 215 (480)
T KOG2380|consen 201 CEFFLEIFACEGCKM 215 (480)
T ss_pred HHHHHHHHHhcCCeE
Confidence 888888888888764
|
|
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-08 Score=106.52 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=90.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|.+|.+||++... +..... ++... +++++++. +|+|++++|...++
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~-------g~~~~-~l~ell~~---aDiV~l~lP~t~~t 208 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQL-------GVELV-SLDELLAR---ADFITLHTPLTPET 208 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhc-------CCEEE-cHHHHHhh---CCEEEEccCCChHh
Confidence 58999999999999999999999999999986432 121211 23444 89999887 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+.++ .+.+..+++|.++|+++....-+...+.+.+.+..+
T Consensus 209 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 209 RGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 9888 678888999999999999999999999998877544
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.3e-08 Score=99.19 Aligned_cols=109 Identities=13% Similarity=0.235 Sum_probs=90.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++||||+|.+|+.+|..+..-|.+|.+||+...+...... ......++++++++ +|+|++.+|-...+
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--------~~~~~~~Ld~lL~~---sDiv~lh~PlT~eT 211 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--------GVVGVDSLDELLAE---ADILTLHLPLTPET 211 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--------cceecccHHHHHhh---CCEEEEcCCCCcch
Confidence 58999999999999999999999999999994333211111 24556789999998 99999999999899
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+
T Consensus 212 ~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i 252 (324)
T COG0111 212 RGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252 (324)
T ss_pred hcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCc
Confidence 9888 567778999999999999998888888888876433
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.9e-08 Score=101.69 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=89.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc--
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS-- 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 81 (484)
++|||||+|.||+.+|+.+...|++|.+||+.....+ . .....++++++++ +|+|++++|-..
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~-----~-------~~~~~~l~ell~~---aDiV~lh~Plt~~g 181 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE-----G-------DGDFVSLERILEE---CDVISLHTPLTKEG 181 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-----c-------CccccCHHHHHhh---CCEEEEeCcCCCCc
Confidence 5899999999999999999999999999998643211 1 1234589999887 999999999765
Q ss_pred --hHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 --PVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 --~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.+...+ ++.+..+++|.++|+++.+..-+...+.+.+.+..+....--|.-
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e 235 (381)
T PRK00257 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWE 235 (381)
T ss_pred cccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCC
Confidence 356666 567788999999999999999999999888876544333333443
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.2e-07 Score=83.26 Aligned_cols=202 Identities=13% Similarity=0.138 Sum_probs=134.8
Q ss_pred CCeEEEEcccHH--------------------HHHHHHHHHhCCCcEEEEeCChhHHHHH-HHHhhhcCCCCeeecCCHh
Q 011501 3 QTRIGLAGLAVM--------------------GQNLALNIAEKGFPISVYNRTTSKVDET-VERAKQEGNLPLYGFHDPE 61 (484)
Q Consensus 3 ~~~IgiIGlG~m--------------------G~~lA~~L~~~G~~V~v~dr~~~~~~~~-~~~~~~~~~~~~~~~~s~~ 61 (484)
+|||.|+|.|+. |..||..++++||+|.+.|+|.+-.++- -+..... +++.+++..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedA---GV~vv~dD~ 77 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDA---GVEVVSDDA 77 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhc---CcEEecCch
Confidence 368999999974 6789999999999999999887644332 2333333 478888888
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHHH--Hc--CCe-EEeccCCCCHH
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAVA--EL--GLL-YLGMGVSGGEE 135 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l~--~~--g~~-~i~~pv~gg~~ 135 (484)
+.++. +++.++-+|-+..+-.+.+.++++++.|.+|.++.|.+|...-. +...++ .+ |+. +..++|-|.+.
T Consensus 78 eaa~~---~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~ 154 (340)
T COG4007 78 EAAEH---GEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQ 154 (340)
T ss_pred hhhhc---ceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCC
Confidence 88887 99999999999899999999999999999999999988765433 223332 22 332 22234444432
Q ss_pred hhhcCCccccC----C----CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 011501 136 GARYGPSLMPG----G----SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVL 207 (484)
Q Consensus 136 ~a~~g~~i~~g----g----~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~ 207 (484)
+|..++.| | .++-.+++.++.++.|+. .|+-|.---..+-=..-.+....++.+.+-+.+.
T Consensus 155 ---h~~yviagr~t~g~elATeEQi~r~velaes~Gk~--------~yv~padv~s~VaDmg~lvtav~l~gvldyy~Vg 223 (340)
T COG4007 155 ---HGHYVIAGRSTEGKELATEEQIERCVELAESTGKE--------VYVLPADVVSAVADMGVLVTAVALSGVLDYYYVG 223 (340)
T ss_pred ---CceEEEeccCCCceeeccHHHHHHHHHHHHhcCCc--------eEecCHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33323222 2 467788899999999976 4444422222222222344555667777888877
Q ss_pred HHhCCCCHHHHHHH
Q 011501 208 KSVGKLSNEELQQV 221 (484)
Q Consensus 208 ~~~g~~~~~~i~~~ 221 (484)
++--|.+.+.+.+.
T Consensus 224 ~qIi~AP~eMIekQ 237 (340)
T COG4007 224 TQIIGAPKEMIEKQ 237 (340)
T ss_pred HHHhCCcHHHHHHH
Confidence 75443666655444
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.6e-08 Score=98.90 Aligned_cols=121 Identities=14% Similarity=0.146 Sum_probs=91.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH--------HHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV--------ERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~--------~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++|||||+|.||+.+|+.|...|.+|++|||+........ ..... ......++++++.+ +|+|++
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~ell~~---aDiVvl 232 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD----EKGGHEDIYEFAGE---ADIVVL 232 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc----ccCcccCHHHHHhh---CCEEEE
Confidence 5899999999999999999999999999999843211110 00000 00134578888887 999999
Q ss_pred ecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 76 LVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 76 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
++|....++.++ .+.+..+++|.++|+++.+..-+...+.+.+....+.....-|+
T Consensus 233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~ 289 (347)
T PLN02928 233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVA 289 (347)
T ss_pred CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccC
Confidence 999988888888 57778899999999999998888888888887654443333333
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-07 Score=95.21 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=93.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++||||+|.+|+.+|+++..-|.+|..|||++. .+..+.. +..... +++++++ +|+|.+.+|...+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~------~~~y~~-l~ell~~---sDii~l~~Plt~~T 214 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKEL------GARYVD-LDELLAE---SDIISLHCPLTPET 214 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhc------Cceecc-HHHHHHh---CCEEEEeCCCChHH
Confidence 6899999999999999999977889999999975 1222221 133444 9999998 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
...+ .+.+..+++|.++|+++.+..-+...+.+.+++..+.-.+.-|.
T Consensus 215 ~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 215 RHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred hhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 9988 67778899999999999999999999999998765443333333
|
|
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.3e-08 Score=86.48 Aligned_cols=91 Identities=15% Similarity=0.235 Sum_probs=65.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||.|..|.+.|+||.+.|++|.+..|..+ ..+...+.+ +. ..+.+|+++. +|+|++.+|+.
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~G-------f~-v~~~~eAv~~---aDvV~~L~PD~- 71 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADG-------FE-VMSVAEAVKK---ADVVMLLLPDE- 71 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT--------E-CCEHHHHHHC----SEEEE-S-HH-
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCC-------Ce-eccHHHHHhh---CCEEEEeCChH-
Confidence 36899999999999999999999999999998877 444444433 33 3588888887 99999999986
Q ss_pred hHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
.-.++. +++.|.|++|++++-...
T Consensus 72 ~q~~vy~~~I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 72 VQPEVYEEEIAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHHHHHHHHHHS-TT-EEEESSS
T ss_pred HHHHHHHHHHHhhCCCCCEEEeCCc
Confidence 445565 899999999998876554
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.7e-08 Score=99.98 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=91.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+||+++... .. .+....+++++++. +|+|++++|....+
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---sDiVslh~Plt~~T 217 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP-----LG------NARQVGSLEELLAQ---SDVVSLHVPETPST 217 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc-----cC------CceecCCHHHHHhh---CCEEEEcCCCChHH
Confidence 589999999999999999999999999999874311 01 13445689999988 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+.+..+...
T Consensus 218 ~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ga 261 (409)
T PRK11790 218 KNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGA 261 (409)
T ss_pred hhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEE
Confidence 8888 567788999999999999999999999999887655433
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-08 Score=96.23 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=88.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+|||+.... .. .+ ...+++++++. +|+|++++|-...+
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~-------~~-~~~~l~ell~~---sDvv~lh~Plt~~T 210 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NE-------EY-ERVSLEELLKT---SDIISIHAPLNEKT 210 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----cc-------Cc-eeecHHHHhhc---CCEEEEeCCCCchh
Confidence 579999999999999999998999999999974321 10 12 23488999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ ++.+..+++|.++|+++.+..-+...+.+.|++..+.
T Consensus 211 ~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 211 KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 8888 6777889999999999999988999999988775554
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=90.74 Aligned_cols=117 Identities=16% Similarity=0.183 Sum_probs=81.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||||||+|.||..++..+.+. +++ +.+||+++++.+.+.+.. +...+.++++++.. +|+|++|+|+.
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------~~~~~~~~~ell~~---~DvVvi~a~~~ 72 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------GAKACLSIDELVED---VDLVVECASVN 72 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------CCeeECCHHHHhcC---CCEEEEcCChH
Confidence 6999999999999999999876 355 568999999888776532 24567889998755 99999999875
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC---ChHHHHHHHHHHHHcCCe-EEeccCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE---WYENTERRQKAVAELGLL-YLGMGVSGG 133 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pv~gg 133 (484)
...+.+..++ +.|.-++..|.. .+...+++.+.+++.|.. ++..+..+|
T Consensus 73 -~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~sga~~g 125 (265)
T PRK13304 73 -AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPSGAIVG 125 (265)
T ss_pred -HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeCchHHh
Confidence 4555554444 345545555542 444556677777777754 444443443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=92.72 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=87.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+||+.... . . . ...+++++++. +|+|++++|-...+
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~-------~-~~~~l~ell~~---sDiv~l~lPlt~~T 211 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----R-------P-DRLPLDELLPQ---VDALTLHCPLTEHT 211 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----c-------c-cccCHHHHHHh---CCEEEECCCCChHH
Confidence 58999999999999999999999999999986421 0 0 1 13478999887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 212 RHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred hcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888 6777889999999999999888888898888875444
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-07 Score=97.31 Aligned_cols=105 Identities=10% Similarity=0.156 Sum_probs=84.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
++|||||+|.||+.+|+.|...|.+|.+||+.... . .. .....++++++++ ||+|++.+|-...
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----~~------~~~~~~L~ell~~---sDiI~lh~PLt~~g 181 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----GD------EGDFRSLDELVQE---ADILTFHTPLFKDG 181 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c----cc------ccccCCHHHHHhh---CCEEEEeCCCCCCc
Confidence 58999999999999999999999999999975321 0 10 0124589999887 9999999996643
Q ss_pred ---HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 83 ---VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 83 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+...+ ++.+..+++|.++|+++.+..-+...+.+.+++..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~ 226 (378)
T PRK15438 182 PYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQK 226 (378)
T ss_pred ccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCC
Confidence 55666 567788999999999999998888888888876544
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=96.05 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=86.2
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||..++..+.. ...+|.+|||++++.+++.++.... +..+..+.++++++.+ +|+|+.++|...
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~-g~~~~~~~~~~~av~~---aDIVi~aT~s~~ 201 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQ-GFDAEVVTDLEAAVRQ---ADIISCATLSTE 201 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhc-CCceEEeCCHHHHHhc---CCEEEEeeCCCC
Confidence 579999999999999986554 4478999999999999988764321 1125667889888877 999988888763
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. ++.. ..+++|. +|++.++.+...+++...+.+++..|+|.
T Consensus 202 p---vl~~--~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 202 P---LVRG--EWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred C---EecH--HHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 2 3321 4577887 67777777777777777776677778875
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=93.52 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=88.2
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++||||+|.+|+.+|+.+. .-|.+|.+||+...... .... ++. ..++++++++ +|+|++++|-...
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~-~~~~-------~~~-~~~l~ell~~---sDvv~lh~plt~~ 213 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA-EERF-------NAR-YCDLDTLLQE---SDFVCIILPLTDE 213 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh-HHhc-------CcE-ecCHHHHHHh---CCEEEEeCCCChH
Confidence 58999999999999999997 77889999998753211 1111 123 3489999988 9999999999988
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
++.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.
T Consensus 214 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 214 THHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 88888 5677889999999999999988888899888765443
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-07 Score=92.61 Aligned_cols=105 Identities=10% Similarity=0.155 Sum_probs=87.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+||+.... ... ....+++++++. +|+|++++|-...+
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~~-----------~~~~~l~ell~~---sDiv~l~~Plt~~T 211 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VCR-----------EGYTPFEEVLKQ---ADIVTLHCPLTETT 211 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--ccc-----------cccCCHHHHHHh---CCEEEEcCCCChHH
Confidence 58999999999999999999899999999986421 100 123588999888 99999999988888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+..+ .+.+..+++|.++|+++.+..-+...+.+.+.+..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 212 QNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 8888 6777889999999999999988888898888876554
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-07 Score=92.91 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=80.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||..+|..|...|.+|+++||++++.+.+...+.. .....++.+++.+ +|+||.++|.. .+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~-----~~~~~~l~~~l~~---aDiVint~P~~-ii 222 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLI-----PFPLNKLEEKVAE---IDIVINTIPAL-VL 222 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCe-----eecHHHHHHHhcc---CCEEEECCChH-Hh
Confidence 589999999999999999999999999999998876655432211 1112234455554 99999999875 11
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. .+....++++.+|||.++..-.+-. +..++.|+..+-+|
T Consensus 223 ~---~~~l~~~k~~aliIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 223 T---ADVLSKLPKHAVIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred C---HHHHhcCCCCeEEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 1 3455667889999999987533322 45567888877665
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.8e-07 Score=92.21 Aligned_cols=74 Identities=15% Similarity=0.309 Sum_probs=62.7
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||.| .||.+||.+|.++|++|++|++.. .++++++++ +|+||++++.+..
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t---------------------~~l~e~~~~---ADIVIsavg~~~~ 215 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS---------------------TDAKALCRQ---ADIVVAAVGRPRL 215 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhc---CCEEEEecCChhc
Confidence 589999996 999999999999999999998653 256677777 9999999999876
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.+. +++|.+|||+|...
T Consensus 216 v~~~~------ik~GaiVIDvgin~ 234 (301)
T PRK14194 216 IDADW------LKPGAVVIDVGINR 234 (301)
T ss_pred ccHhh------ccCCcEEEEecccc
Confidence 66543 78999999999664
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.2e-06 Score=80.52 Aligned_cols=171 Identities=14% Similarity=0.112 Sum_probs=110.1
Q ss_pred CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 26 GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 26 G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
-++|.+|+|++++.+.+.+.. ++....+..++++. +|+||+||+ +.++++++.++.+.+.++++||++..
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~------g~~~~~~~~e~~~~---aDiIiLaVk-P~~i~~vl~~l~~~~~~~~~ivS~~a 78 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKEL------GIVASSDAQEAVKE---ADVVFLAVK-PQDLEEVLSELKSEKGKDKLLISIAA 78 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHc------CcEEeCChHHHHhh---CCEEEEEeC-HHHHHHHHHHHhhhccCCCEEEEecC
Confidence 368999999999988876643 24567788888887 999999999 45899999999887777889999888
Q ss_pred CChHHHHHHHHHHHHcCCeEE-eccCCCCHHhhhcCC-ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCc--
Q 011501 106 EWYENTERRQKAVAELGLLYL-GMGVSGGEEGARYGP-SLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG-- 179 (484)
Q Consensus 106 ~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~-- 179 (484)
..+. ..+.+.+.. +...+ -+|-. +.....|. .+..+. +++..+.++.+|+.+|.- +++.+.
T Consensus 79 gi~~--~~l~~~~~~-~~~ivR~mPn~--~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~--------~~v~E~~~ 145 (245)
T TIGR00112 79 GVTL--EKLSQLLGG-TRRVVRVMPNT--PAKVGAGVTAIAANANVSEEDRALVLALFKAVGEV--------VELPEALM 145 (245)
T ss_pred CCCH--HHHHHHcCC-CCeEEEECCCh--HHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCE--------EEECHHHc
Confidence 7643 334444432 12222 24532 33344666 444442 566678899999999952 444321
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
-....+--...++.+..+..+.++ +.+.| +++++..++..
T Consensus 146 ~~~talsgsgPA~~~~~~~al~~~---~v~~G-l~~~~A~~lv~ 185 (245)
T TIGR00112 146 DAVTALSGSGPAYVFLFIEALADA---GVKQG-LPRELALELAA 185 (245)
T ss_pred chHHhhccCcHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 111111112233444444444444 34567 99999888764
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.3e-07 Score=91.32 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=92.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhH-HHHHHHHhhh----cCC--CCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSK-VDETVERAKQ----EGN--LPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~-~~~~~~~~~~----~~~--~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++|||||+|.+|+.+|+.+. .-|.+|.+||+++.. .+.+...... .+. ..+....+++++++. +|+|++
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~---sDiV~l 242 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLRE---ADVISL 242 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhh---CCEEEE
Confidence 58999999999999999986 679999999998642 1211111100 000 001224588999887 999999
Q ss_pred ecCCCchHHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 76 LVKAGSPVDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 76 ~vp~~~~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
++|-...++..+ .+.+..+++|.++|+++.+..-+...+.+.+++..+.....-|+-.
T Consensus 243 h~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~ 301 (386)
T PLN02306 243 HPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED 301 (386)
T ss_pred eCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence 999888888888 6777889999999999999888888888888775454333344433
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.2e-06 Score=73.22 Aligned_cols=112 Identities=16% Similarity=0.253 Sum_probs=83.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+||||||+|.+|......+.+. +.+| .++|+++++.+.+.+.. ++..++|.+++++. +..|+|++++|+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~I~tp~~ 73 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKY------GIPVYTDLEELLAD-EDVDAVIIATPPS 73 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------TSEEESSHHHHHHH-TTESEEEEESSGG
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHh------cccchhHHHHHHHh-hcCCEEEEecCCc
Confidence 3899999999999999888877 3454 47899999988876544 36689999999984 2489999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.+.+.+...+.... .++++- -...+.+.+++.+..+++|..+
T Consensus 74 ~h~~~~~~~l~~g~---~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 74 SHAEIAKKALEAGK---HVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp GHHHHHHHHHHTTS---EEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred chHHHHHHHHHcCC---EEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 76665544443322 566663 2335678888888888877654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=87.64 Aligned_cols=106 Identities=21% Similarity=0.265 Sum_probs=89.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||+|+|.+|+.+|++|...|..+.-++|++...+...+... . ..+.++++.+ +|+|++++|....+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~-------~-~~d~~~~~~~---sD~ivv~~pLt~~T 231 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYA-------E-FVDIEELLAN---SDVIVVNCPLTKET 231 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcc-------c-ccCHHHHHhh---CCEEEEecCCCHHH
Confidence 58999999999999999999999555666787776666554432 1 4588888888 99999999999999
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 120 (484)
..++ .++...+++|.+||+++-+..-+-+.+.+.+++
T Consensus 232 ~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 232 RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS 269 (336)
T ss_pred HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc
Confidence 9999 678889999999999999998888888888765
|
|
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=78.63 Aligned_cols=107 Identities=19% Similarity=0.274 Sum_probs=75.2
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCC----e---eecCCHhHHHhhcCCCcEEEEecC
Q 011501 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP----L---YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~----~---~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|.|+|+|.||.-+|..|.+.|++|.++.|++ ..+.+.+.+..-.... + ....+..+... .+|+||+||+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAG---PYDLVIVAVK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHS---TESEEEE-SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccC---CCcEEEEEec
Confidence 7899999999999999999999999999998 7777665432100000 0 00111212223 4899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAV 118 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l 118 (484)
.. +++++++.+.+++.+++.|+-..|.. ...+.+.+.+
T Consensus 77 a~-~~~~~l~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~ 114 (151)
T PF02558_consen 77 AY-QLEQALQSLKPYLDPNTTIVSLQNGM-GNEEVLAEYF 114 (151)
T ss_dssp GG-GHHHHHHHHCTGEETTEEEEEESSSS-SHHHHHHCHS
T ss_pred cc-chHHHHHHHhhccCCCcEEEEEeCCC-CcHHHHHHHc
Confidence 87 78999999999999988888888875 3333444443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=86.27 Aligned_cols=117 Identities=20% Similarity=0.223 Sum_probs=82.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc--
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS-- 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~-- 81 (484)
+++.|+|+|.+|.+++..|++.|++|+++||++++.+++.+.....+ .... .+..+.. +..+|+||.|+|.+.
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~--~~~~DivInatp~gm~~ 192 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYG--EIQA-FSMDELP--LHRVDLIINATSAGMSG 192 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcC--ceEE-echhhhc--ccCccEEEECCCCCCCC
Confidence 47999999999999999999999999999999998888776542211 1122 2333322 224899999999862
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.++++. -....+.++.+++|++..++.+ .+.+..+++|..+++.
T Consensus 193 ~~~~~~-~~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 193 NIDEPP-VPAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CCCCCC-CCHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 121110 0123467889999999887654 5777788888877654
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.5e-06 Score=86.55 Aligned_cols=112 Identities=17% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++++|||.|.+|..++..|.+.|.+|+++||++++.+.....+. ......++.+.+.+ +|+||.++|...
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~-----~~~~~~~l~~~l~~---aDiVI~t~p~~~- 222 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGL-----SPFHLSELAEEVGK---IDIIFNTIPALV- 222 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-----eeecHHHHHHHhCC---CCEEEECCChhh-
Confidence 368999999999999999999999999999999887655443321 11112244455554 999999998641
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+-++....++++.+|||.++..-. +. + +..+++|+..+.++
T Consensus 223 ---i~~~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 223 ---LTKEVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALLAP 263 (296)
T ss_pred ---hhHHHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEEEC
Confidence 224556678899999999887643 32 2 34566788777654
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.3e-06 Score=82.14 Aligned_cols=201 Identities=11% Similarity=0.053 Sum_probs=114.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--C-----CcEEEEeCChh------HHHHHHH-HhhhcCCC--------CeeecCCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK--G-----FPISVYNRTTS------KVDETVE-RAKQEGNL--------PLYGFHDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~--G-----~~V~v~dr~~~------~~~~~~~-~~~~~~~~--------~~~~~~s~ 60 (484)
..||+|||.|++|+++|+.+.++ + .+|..|-+..+ ++.+... .+.+- .| ++.+.+|+
T Consensus 21 ~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~-KYlpg~~lP~NvvAv~dl 99 (372)
T KOG2711|consen 21 PLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENV-KYLPGIKLPENVVAVPDL 99 (372)
T ss_pred ceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccc-cccCCccCCCCeEecchH
Confidence 45899999999999999998864 2 25776644322 2222221 11110 11 57788888
Q ss_pred hHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH-----HHHHHHHHHH-cCC--eEEeccCCC
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN-----TERRQKAVAE-LGL--LYLGMGVSG 132 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-----~~~~~~~l~~-~g~--~~i~~pv~g 132 (484)
.+++.. +|++|..+|.. .+..++++|..+++++...|.++.+.-.. ..-+.+.+.+ .|+ .++..|-..
T Consensus 100 ~ea~~d---ADilvf~vPhQ-f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA 175 (372)
T KOG2711|consen 100 VEAAKD---ADILVFVVPHQ-FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA 175 (372)
T ss_pred HHHhcc---CCEEEEeCChh-hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence 888877 99999999996 89999999999999999999887654211 1222333322 233 233333332
Q ss_pred CHHhhhcCC-ccccCC-CHHHHH-HHHHHHHHHh-----------ccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHh
Q 011501 133 GEEGARYGP-SLMPGG-SFEAYK-HIEDILLKVA-----------AQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQ 198 (484)
Q Consensus 133 g~~~a~~g~-~i~~gg-~~~~~~-~v~~ll~~i~-----------~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~ 198 (484)
.+ -|.+-. ---+|+ ++.... .++.+|+.-- -++.++.|+++.++. |-...+.+..|.-.+.+.+
T Consensus 176 ~E-Va~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaa-GfvdGL~~g~NTkaAi~r~ 253 (372)
T KOG2711|consen 176 SE-VANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAA-GFVDGLGLGNNTKAAIIRL 253 (372)
T ss_pred HH-HHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhh-hhhhhccCCcchHHHHHHh
Confidence 22 233333 222333 333333 2555553311 111122344444443 4444455566666666666
Q ss_pred HHHHHHHHHHHh
Q 011501 199 LIAEAYDVLKSV 210 (484)
Q Consensus 199 ~~~Ea~~l~~~~ 210 (484)
.+.|+..+++..
T Consensus 254 Gl~Em~~F~~~f 265 (372)
T KOG2711|consen 254 GLLEMIKFATHF 265 (372)
T ss_pred hHHHHHHHHHHh
Confidence 666666666554
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.7e-05 Score=72.72 Aligned_cols=108 Identities=8% Similarity=0.095 Sum_probs=77.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|+|||. |.||+.++..|.++||.|++ .+ +|+||+|+|.. .
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~---------------------------------~~---~DlVilavPv~-~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI---------------------------------KK---ADHAFLSVPID-A 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE---------------------------------CC---CCEEEEeCCHH-H
Confidence 48999988 99999999999999998851 12 89999999987 6
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcC---Ccccc--CCCHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYG---PSLMP--GGSFEAYKHIE 156 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g---~~i~~--gg~~~~~~~v~ 156 (484)
+.++++++. .+|+|.++++-.- . +.+..|++. |++| +..+..+ ..+++ ..+++..+.++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i----~----~~~~~~vg~HPMfG-p~~a~~~lf~~~iv~~~~~~~~~~~~~~ 108 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPF----K----KYSGKIVSIHPLFG-PMSYNDGVHRTVIFINDISRDNYLNEIN 108 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHH----H----HhcCCEEecCCCCC-CCcCcccccceEEEECCCCCHHHHHHHH
Confidence 677776654 3799999998431 1 124578886 7776 4444433 33333 34667778888
Q ss_pred HHHHHHhcc
Q 011501 157 DILLKVAAQ 165 (484)
Q Consensus 157 ~ll~~i~~~ 165 (484)
.+++ |.+
T Consensus 109 ~l~~--G~~ 115 (197)
T PRK06444 109 EMFR--GYH 115 (197)
T ss_pred HHHc--CCE
Confidence 8887 555
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.9e-06 Score=84.36 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=68.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|+|||+|.||..+++.|...| .+|+++||++++.+++.+.... .....++..+.+.. +|+||.|+|.+.
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~~---aDvVi~at~~~~ 250 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG----NAVPLDELLELLNE---ADVVISATGAPH 250 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC----eEEeHHHHHHHHhc---CCEEEECCCCCc
Confidence 368999999999999999999866 6899999999988887765421 12222234444444 999999999885
Q ss_pred hHHHHHHHHhhhc-CCCCEEEecCC
Q 011501 82 PVDQTIKTLSVYM-EKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl~~l~~~l-~~g~iiId~st 105 (484)
. ...+..+.... .++.+|||.+.
T Consensus 251 ~-~~~~~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 251 Y-AKIVERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred h-HHHHHHHHhhCCCCCeEEEEeCC
Confidence 4 44444444332 35789999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=75.05 Aligned_cols=96 Identities=20% Similarity=0.248 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|||+|.||+.++..|++.|.+ |+++||+.++.+++.+..... .......++..+.... +|+||.++|.+..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~-~~~~~~~~~~~~~~~~---~DivI~aT~~~~~ 88 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGV-NIEAIPLEDLEEALQE---ADIVINATPSGMP 88 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGC-SEEEEEGGGHCHHHHT---ESEEEE-SSTTST
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCcc-ccceeeHHHHHHHHhh---CCeEEEecCCCCc
Confidence 5899999999999999999999987 999999999999988765221 0012334445555555 9999999998854
Q ss_pred HHHHHHHHhhhcCCC-CEEEecCC
Q 011501 83 VDQTIKTLSVYMEKG-DCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g-~iiId~st 105 (484)
.+-++......+. .+++|.+.
T Consensus 89 --~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 89 --IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp --SSTHHHHTTTCHHCSEEEES-S
T ss_pred --ccCHHHHHHHHhhhhceecccc
Confidence 1112222222111 49999973
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=84.79 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=60.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|+||| .|.||.+||.+|.++|++|++|+ |++ ++++++++ +|+||+|++.+.
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~----------------------~l~e~~~~---ADIVIsavg~~~ 213 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR----------------------DLPAVCRR---ADILVAAVGRPE 213 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC----------------------CHHHHHhc---CCEEEEecCChh
Confidence 5899999 99999999999999999999995 553 34455666 999999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.++.++ +++|.+|||++...
T Consensus 214 ~v~~~~------lk~GavVIDvGin~ 233 (296)
T PRK14188 214 MVKGDW------IKPGATVIDVGINR 233 (296)
T ss_pred hcchhe------ecCCCEEEEcCCcc
Confidence 555443 78999999998764
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=82.27 Aligned_cols=126 Identities=17% Similarity=0.171 Sum_probs=90.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|++|-|||+|.+|+..|..|+++| ++|++-||+.++.+++....... ..... ..+.+.+.+-+++.|+||.|.|.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~--v~~~~vD~~d~~al~~li~~~d~VIn~~p~ 78 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGK--VEALQVDAADVDALVALIKDFDLVINAAPP 78 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcccc--ceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence 468999999999999999999999 89999999999998887653110 01111 22444444444458999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE-EeccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY-LGMGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~-i~~pv~gg~~ 135 (484)
.. ...+++.. ++.|.-++|+|...+.. .++...+.+.|+.. +++++..|-.
T Consensus 79 ~~-~~~i~ka~---i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 79 FV-DLTILKAC---IKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred hh-hHHHHHHH---HHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 73 33444443 55788999999988765 77777778888755 4567666543
|
|
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.2e-06 Score=83.88 Aligned_cols=97 Identities=20% Similarity=0.254 Sum_probs=73.8
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++||||+|.||...+..|.. ...+|.+|||++++.+.+.++.... +..+..+.++++++++ +|+|++|+|+.+
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~-g~~v~~~~~~~eav~~---aDiVitaT~s~~ 204 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY-EVPVRAATDPREAVEG---CDILVTTTPSRK 204 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh-CCcEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 579999999999997766654 4568999999999998887654321 1135678899999987 999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
.+-. ...+++|..|...++..|.
T Consensus 205 P~~~-----~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 205 PVVK-----ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred cEec-----HHHcCCCCEEEecCCCCcc
Confidence 4221 2357899999888877653
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.5e-05 Score=79.60 Aligned_cols=89 Identities=18% Similarity=0.411 Sum_probs=62.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|++.||+|||+|.||..++..+.++ ++++. +||+++ ++.. +.. ++....+.+++... +|+|++|+
T Consensus 1 M~kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~---~~~------~v~~~~d~~e~l~~---iDVViIct 68 (324)
T TIGR01921 1 MSKIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD---TET------PVYAVADDEKHLDD---VDVLILCM 68 (324)
T ss_pred CCCcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh---hcC------CccccCCHHHhccC---CCEEEEcC
Confidence 7778999999999999999999876 67766 579985 3322 111 23334455555544 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+..+.+.+ .+.+..|.-+|++..
T Consensus 69 Ps~th~~~~----~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 69 GSATDIPEQ----APYFAQFANTVDSFD 92 (324)
T ss_pred CCccCHHHH----HHHHHcCCCEEECCC
Confidence 998775544 344567777888754
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.4e-06 Score=81.22 Aligned_cols=74 Identities=14% Similarity=0.319 Sum_probs=61.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||. |.||.+||.+|.++|++|++|... +.++++.+++ +|+||++++.+..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~---------------------t~~l~~~~~~---ADIVI~avg~~~~ 214 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR---------------------TRNLAEVARK---ADILVVAIGRGHF 214 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC---------------------CCCHHHHHhh---CCEEEEecCcccc
Confidence 58999999 999999999999999999999321 2366777777 9999999999876
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.. ++++|.+|||+|...
T Consensus 215 v~~~------~ik~GavVIDvgin~ 233 (284)
T PRK14179 215 VTKE------FVKEGAVVIDVGMNR 233 (284)
T ss_pred CCHH------HccCCcEEEEeccee
Confidence 6653 388999999998764
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.4e-05 Score=79.77 Aligned_cols=117 Identities=13% Similarity=0.217 Sum_probs=83.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++||||+|.+|...+..+..- . .+|.+|||++++.++|.++.....+..+..+.++++++.. +|+|+.+++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~---aDIV~taT~s~~ 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRD---ADTITSITNSDT 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 4799999999999998888763 2 3799999999999998876543212246778999999988 999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|.-.++..|...+--.+.+......|+|.
T Consensus 195 P~---~~--~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PI---FN--RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred cE---ec--HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 42 21 23577898888888777643322233344333456664
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.7e-05 Score=78.12 Aligned_cols=100 Identities=14% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcC---C--CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEG---N--LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~---~--~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+||+|||+|.||..+|..++..|+ +|.++|+++++.+.......... . .+++.+.+.++ ++. +|+||++
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~-~~~---aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYED-IAG---SDVVVIT 77 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHH-HCC---CCEEEEC
Confidence 4799999999999999999999876 99999999876544322111000 0 02344455544 344 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+..+. .++++++.+.+.. +..++|..+|..
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~-~~~~viv~tNP~ 122 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYA-PDAIVIVVTNPV 122 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 73221 2344556666665 456677776644
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=69.35 Aligned_cols=98 Identities=18% Similarity=0.223 Sum_probs=62.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhC-CCcEEEE-eCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEK-GFPISVY-NRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
||+||| .|.+|..++..|.++ ++++..+ +++.++.+.+...+.... ... ...+..++. ...+|+||+|+|++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~DvV~~~~~~~ 76 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLK--GEVVLELEPEDFE--ELAVDIVFLALPHG 76 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccc--cccccccccCChh--hcCCCEEEEcCCcH
Confidence 689999 599999999999985 7777655 665444333333221100 010 011112222 12499999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+++..+.+.+.+|.+|||+|+..
T Consensus 77 -~~~~~~~~~~~~~~~g~~viD~s~~~ 102 (122)
T smart00859 77 -VSKEIAPLLPKAAEAGVKVIDLSSAF 102 (122)
T ss_pred -HHHHHHHHHHhhhcCCCEEEECCccc
Confidence 55555555666678999999999875
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.6e-05 Score=78.90 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=81.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..++. .+ .+|.+|||++++.+++.+......+..+..+.+.++++.. +|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDiVi~aT~s~~ 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEE---ADIIVTVTNAKT 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhc---CCEEEEccCCCC
Confidence 479999999999998887764 34 3799999999999888765432111124567888888877 999999999874
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. ++. ..+++|..|+..++..|...+.-.+.+......|+|.
T Consensus 205 p---~i~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 205 P---VFS---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred c---chH---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 3 333 4578999999988877644433233333333346665
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=77.38 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=69.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||.|..|.+-|+||.++|.+|++--|.... .+.+.+.+ +. +.+++|+++. +|+|++.+|+. .
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dG-------f~-V~~v~ea~k~---ADvim~L~PDe-~ 86 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDG-------FK-VYTVEEAAKR---ADVVMILLPDE-Q 86 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcC-------CE-eecHHHHhhc---CCEEEEeCchh-h
Confidence 58999999999999999999999999988776555 33333322 33 5689999988 99999999997 4
Q ss_pred HHHHH-HHHhhhcCCCCEEEec
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDG 103 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~ 103 (484)
-.++. +++.|.|++|+.+.-.
T Consensus 87 q~~vy~~~I~p~Lk~G~aL~Fa 108 (338)
T COG0059 87 QKEVYEKEIAPNLKEGAALGFA 108 (338)
T ss_pred HHHHHHHHhhhhhcCCceEEec
Confidence 45566 4999999999866443
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.1e-05 Score=76.98 Aligned_cols=114 Identities=16% Similarity=0.237 Sum_probs=82.1
Q ss_pred CCCCeEEEEcccHH-HHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGLAVM-GQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGlG~m-G~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~ 75 (484)
|+++||||||+|.+ +...+..+.+.+. -|.++|+++++.+.+.++.. + ..++|.+++++. ...|+|++
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~iD~V~I 73 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFG------IAKAYTDLEELLAD-PDIDAVYI 73 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEE
Confidence 66789999999955 4668888888763 47788999999988887542 3 478899999886 23699999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
++|+..+.+.++..| ..|+ ++++- =+..+.+.+++.+..+++|..+
T Consensus 74 atp~~~H~e~~~~AL----~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l 121 (342)
T COG0673 74 ATPNALHAELALAAL----EAGKHVLCEKPLALTLEEAEELVELARKAGVKL 121 (342)
T ss_pred cCCChhhHHHHHHHH----hcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCce
Confidence 999998877765444 3444 44441 1223467777777777776544
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=3.1e-05 Score=77.79 Aligned_cols=115 Identities=14% Similarity=0.241 Sum_probs=83.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.++...++.+..- --+|.+|||++++.+.|.+..... +..+..+++.++++.. +|+|+.+++...
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIV~taT~s~~ 204 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL-GFAVNTTLDAAEVAHA---ANLIVTTTPSRE 204 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc-CCcEEEECCHHHHhcC---CCEEEEecCCCC
Confidence 5799999999999998887753 248999999999999887654322 2346678899999987 999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHH-HHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQ-KAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~-~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|+-.++..|.. +++. +.+......|+|.
T Consensus 205 P~---~~--~~~l~~G~hi~~iGs~~p~~-~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 205 PL---LQ--AEDIQPGTHITAVGADSPGK-QELDAELVARADKILVDS 246 (315)
T ss_pred ce---eC--HHHcCCCcEEEecCCCCccc-ccCCHHHHhhCCEEEECC
Confidence 42 21 14578999998888877633 3333 3333333456665
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=77.24 Aligned_cols=113 Identities=16% Similarity=0.111 Sum_probs=80.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..+.. .+ .+|.+|||++++.+.+.++.... +..+. +.+.++++.+ +|+|+.|+|...
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-~~~~~-~~~~~~av~~---aDiVitaT~s~~ 200 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-GPTAE-PLDGEAIPEA---VDLVVTATTSRT 200 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-CCeeE-ECCHHHHhhc---CCEEEEccCCCC
Confidence 579999999999999999975 45 47999999999999988765421 11122 5788888877 999999999885
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ +.. .+++|..|+..++..|..-+--.+.+... -.|+|.
T Consensus 201 Pl---~~~---~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 201 PV---YPE---AARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred ce---eCc---cCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 43 322 46899999988887764332222233332 346665
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=82.39 Aligned_cols=106 Identities=14% Similarity=0.252 Sum_probs=75.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++++|+|+|.+|.+++..|++.|++|+++||++++.+.+.+.... .. .+.+++ ..+..+|+||.|+|.+..
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~------~~-~~~~~~-~~l~~~DiVInatP~g~~ 403 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQG------KA-FPLESL-PELHRIDIIINCLPPSVT 403 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc------ce-echhHh-cccCCCCEEEEcCCCCCc
Confidence 3579999999999999999999999999999999988877654211 11 122222 123449999999999864
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+... +. .+++|+...++.+. +.+.++++|...++
T Consensus 404 ~~~~-------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 404 IPKA-------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred chhH-------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 3321 11 38999998765544 56677778876554
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=82.69 Aligned_cols=76 Identities=18% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..+|+|||+|.||..++.+|...|. +|+++||++++.+.+.+..... ...+....+..+.+.. +|+||.|++.+.
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~-~i~~~~~~dl~~al~~---aDVVIsAT~s~~ 341 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDV-EIIYKPLDEMLACAAE---ADVVFTSTSSET 341 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCC-ceEeecHhhHHHHHhc---CCEEEEccCCCC
Confidence 3689999999999999999999997 6999999999998887653210 0011223445555555 999999997765
Q ss_pred h
Q 011501 82 P 82 (484)
Q Consensus 82 ~ 82 (484)
.
T Consensus 342 p 342 (519)
T PLN00203 342 P 342 (519)
T ss_pred C
Confidence 4
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.7e-05 Score=69.49 Aligned_cols=119 Identities=18% Similarity=0.258 Sum_probs=76.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||+||+|.+|..+...+.+. ++ .|.+|||+.++..++.+... ...+++++|++.. +|+++.|-...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~------~~~~s~ide~~~~---~DlvVEaAS~~ 71 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVG------RRCVSDIDELIAE---VDLVVEAASPE 71 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcC------CCccccHHHHhhc---cceeeeeCCHH
Confidence 4799999999999999877643 24 57899999999988776442 3456889998866 99999997554
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE--EeccCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY--LGMGVSGG 133 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~--i~~pv~gg 133 (484)
++++...+++.. ..+-+|+..+...-+...++...+.+.+... +..+-.||
T Consensus 72 -Av~e~~~~~L~~-g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGG 124 (255)
T COG1712 72 -AVREYVPKILKA-GIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGG 124 (255)
T ss_pred -HHHHHhHHHHhc-CCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchh
Confidence 666655444432 1223445555444344444444455554433 33444444
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.3e-05 Score=75.89 Aligned_cols=99 Identities=13% Similarity=0.194 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHH----HHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~----~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+... +...... ..+++.+.+.++ ++. +|+||+++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~---aDiVIita 77 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TAN---SDIVVITA 77 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCC---CCEEEEcC
Confidence 589999999999999999999887 8999999876543111 1111000 013555677776 444 99999999
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.+. .++++++++.++. ++.+||..||-.
T Consensus 78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~-p~~~iIv~tNP~ 121 (305)
T TIGR01763 78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHS-PNPIIVVVSNPL 121 (305)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 8432 2334445666664 566777777754
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=7.6e-05 Score=71.40 Aligned_cols=99 Identities=16% Similarity=0.291 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-hhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 80 (484)
|+|.|||+|.+|..+|+.|.+.||+|.+.|+++++++++.+. .... -+....+-.+++++ +..+|+++.++..+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~---~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTH---VVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceE---EEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 589999999999999999999999999999999998885542 1100 13334444455443 45799999999887
Q ss_pred chHHHHHHHHhhh-cCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVY-MEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~-l~~g~iiId~st~ 106 (484)
.+..++-.+... +....+|.-..+.
T Consensus 78 -~~N~i~~~la~~~~gv~~viar~~~~ 103 (225)
T COG0569 78 -EVNSVLALLALKEFGVPRVIARARNP 103 (225)
T ss_pred -HHHHHHHHHHHHhcCCCcEEEEecCH
Confidence 666666655543 4455566555544
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.7e-05 Score=75.29 Aligned_cols=118 Identities=13% Similarity=0.182 Sum_probs=87.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..++|||+|.++......+..- .-+|.+|+|+++..+++.....+.++..+..+.|.+++++. +|+|+.|+|+.+
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~---aDiIvt~T~s~~ 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEG---ADIVVTATPSTE 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhc---CCEEEEecCCCC
Confidence 4699999999999998888753 34899999999999998866544322236788999999998 999999999885
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ++ ...++++|..|.-.++-.|...+--.+.+...+..|+|.+
T Consensus 208 P---il--~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 208 P---VL--KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred C---ee--cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 3 22 1246789998888887765544333444444456777765
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.8e-05 Score=67.61 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++.|+|.|..|+++|+.|...|-+|++++++|-+.-++...+ +.. .+.++++.. +|++|.++.....+
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dG-------f~v-~~~~~a~~~---adi~vtaTG~~~vi 92 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDG-------FEV-MTLEEALRD---ADIFVTATGNKDVI 92 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT--------EE-E-HHHHTTT----SEEEE-SSSSSSB
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcC-------cEe-cCHHHHHhh---CCEEEECCCCcccc
Confidence 5799999999999999999999999999999997654444332 343 367888776 99999998765322
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. .+..+.+++|.++.+.+....+
T Consensus 93 ~---~e~~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 93 T---GEHFRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp ----HHHHHHS-TTEEEEESSSSTTS
T ss_pred C---HHHHHHhcCCeEEeccCcCcee
Confidence 2 2344568899999998877543
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.5e-05 Score=76.56 Aligned_cols=97 Identities=10% Similarity=0.235 Sum_probs=72.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.+|...+..|+. .+. +|.+|||++++.+++.++.....+..+..++++++.+.. +|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~---aDiVvtaT~s~~ 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSG---ADIIVTTTPSET 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhcc---CCEEEEecCCCC
Confidence 479999999999999999973 564 699999999999988776432101134557788888876 999999998864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
. ++. ...+++|..|...+...|
T Consensus 207 p---~i~--~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 207 P---ILH--AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred c---Eec--HHHcCCCcEEEeeCCCCC
Confidence 3 221 134678888887775543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.4e-05 Score=64.58 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=70.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCcE-EEEeCChhH-----HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE-KGFPI-SVYNRTTSK-----VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~-~G~~V-~v~dr~~~~-----~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|||+|+|+ |.||+.++..+.+ .++++ .+++++++. +.++.... ..++...++++++.+. +|++|-
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~----~~~~~v~~~l~~~~~~---~DVvID 73 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG----PLGVPVTDDLEELLEE---ADVVID 73 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS----T-SSBEBS-HHHHTTH----SEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC----CcccccchhHHHhccc---CCEEEE
Confidence 48999999 9999999999998 67774 567888721 11111111 1146677899999888 999988
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.. .++.+.+.++.... .|.-+|-++|.....-.+..+.+.++ +..+-+|
T Consensus 74 fT-~p~~~~~~~~~~~~---~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~ 122 (124)
T PF01113_consen 74 FT-NPDAVYDNLEYALK---HGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAP 122 (124)
T ss_dssp ES--HHHHHHHHHHHHH---HT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-S
T ss_pred cC-ChHHhHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeC
Confidence 87 33355555544443 47778888888754444444454444 4444443
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.1e-05 Score=75.46 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=70.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|+|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.++..+..+..+..+.++++++.. +|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~---aDiVi~aT~s~~ 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAG---ADIIVTTTPSEE 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHcc---CCEEEEeeCCCC
Confidence 579999999999998888875 44 5799999999999998876532111134557788888877 999999998864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ++.. ..+++|..|...++..
T Consensus 210 p---~i~~--~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 210 P---ILKA--EWLHPGLHVTAMGSDA 230 (330)
T ss_pred c---EecH--HHcCCCceEEeeCCCC
Confidence 3 2221 2356787777665544
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00012 Score=83.62 Aligned_cols=118 Identities=18% Similarity=0.171 Sum_probs=84.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-Cc-------------EEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FP-------------ISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~-------------V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l 67 (484)
+++|+|||+|.||...+..|++.. ++ |++.|++++..+++.+..... ..+.. +.+.+++.+.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~--~~v~lDv~D~e~L~~~v 646 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENA--EAVQLDVSDSESLLKYV 646 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCC--ceEEeecCCHHHHHHhh
Confidence 458999999999999999999753 33 999999999888776643110 01333 56778877655
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 68 QKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+|+||+|+|..-+. .++.. .+..|.-+++.+ .....+.++.+.+++.|+.++.
T Consensus 647 ~~~DaVIsalP~~~H~-~VAka---AieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 647 SQVDVVISLLPASCHA-VVAKA---CIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred cCCCEEEECCCchhhH-HHHHH---HHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 6699999999997543 33333 344677778877 4446777788888888887654
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.5e-05 Score=80.39 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=91.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC------hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT------TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~------~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++|+|||+|.+|.+.|.+|...|++|++--|. .+.-+.+.+.+ +. ..+++|+++. +|+|++++
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dG-------F~-v~~~~Ea~~~---ADvVviLl 105 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENG-------FK-VGTYEELIPQ---ADLVINLT 105 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcC-------Cc-cCCHHHHHHh---CCEEEEcC
Confidence 68999999999999999999999999954433 33333333322 33 3578888887 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCHHhh---hc--CC-c-cccC---
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGEEGA---RY--GP-S-LMPG--- 146 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~~~a---~~--g~-~-i~~g--- 146 (484)
|+. .-..+.+++.+.+++|.++.-.-.-... .......+++..+ -+|=..|.... .. |. + +.+-
T Consensus 106 PDt-~q~~v~~~i~p~LK~Ga~L~fsHGFni~----~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~q 180 (487)
T PRK05225 106 PDK-QHSDVVRAVQPLMKQGAALGYSHGFNIV----EVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPEN 180 (487)
T ss_pred ChH-HHHHHHHHHHhhCCCCCEEEecCCceee----eCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecC
Confidence 998 4556668999999999887544332211 0111123344433 35654443322 22 32 2 2222
Q ss_pred -CCHHHHHHHHHHHHHHhcc
Q 011501 147 -GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 147 -g~~~~~~~v~~ll~~i~~~ 165 (484)
-+..+.+.+..+-.++|..
T Consensus 181 D~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 181 DPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred CCCchHHHHHHHHHHHhCCC
Confidence 1334667777777777753
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.88 E-value=5e-05 Score=75.85 Aligned_cols=110 Identities=40% Similarity=0.700 Sum_probs=96.3
Q ss_pred eCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC-CCCHHHHHHHHHhhccCc-chhhhhhhhccccccccCCCCchh
Q 011501 176 VGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG-KLSNEELQQVFSEWNKGE-LLSFLIEITADIFGIKDDKGDGYL 253 (484)
Q Consensus 176 ~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g-~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~ 253 (484)
.|. |+++|+++|++.++.++.++|++.++++.| |+|++++.++ |+.|. ++||+++...+++.+++ .
T Consensus 164 ~G~---~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i---~~~g~~~~s~~l~~~~~~~~~~~------~ 231 (298)
T TIGR00872 164 CGS---GHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARV---WRRGSVIRSWLLDLTAIAFRESP------D 231 (298)
T ss_pred ccH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHH---HcCCchhHhHHHHHHHHHHhcCC------c
Confidence 366 689999999999999999999999999985 3799999877 78876 69999999999987542 3
Q ss_pred HHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCc
Q 011501 254 VDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLK 297 (484)
Q Consensus 254 l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~ 297 (484)
++.+.+.+.++++++|++.+|.+.|+|+|+++++++.|+.|..+
T Consensus 232 ~~~~~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~~~~~~~~~ 275 (298)
T TIGR00872 232 LAEFSGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQSRFASRDL 275 (298)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 55677777789999999999999999999999999999999876
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.86 E-value=5.7e-05 Score=78.99 Aligned_cols=72 Identities=24% Similarity=0.330 Sum_probs=55.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|+|||+|.||..++..|...| .+|+++||++++.+.+.+.... ......+..+.+.. +|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~----~~i~~~~l~~~l~~---aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG----EAVKFEDLEEYLAE---ADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----eEeeHHHHHHHHhh---CCEEEECCCCCCc
Confidence 57999999999999999999999 6899999999988777664321 11222344455555 9999999987654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.3e-05 Score=78.60 Aligned_cols=89 Identities=11% Similarity=0.059 Sum_probs=69.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.+|..+|..+...|.+|+++++++.+.......+ +. ..+++++++. +|+|++++..
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G-------~~-~~~leell~~---ADIVI~atGt---- 319 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEG-------YQ-VVTLEDVVET---ADIFVTATGN---- 319 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcC-------ce-eccHHHHHhc---CCEEEECCCc----
Confidence 5899999999999999999999999999999987654433322 22 2467888776 9999999743
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~ 107 (484)
..++ .+....+++|.++++.+...
T Consensus 320 ~~iI~~e~~~~MKpGAiLINvGr~d 344 (476)
T PTZ00075 320 KDIITLEHMRRMKNNAIVGNIGHFD 344 (476)
T ss_pred ccccCHHHHhccCCCcEEEEcCCCc
Confidence 3344 35667789999999998874
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.7e-05 Score=77.18 Aligned_cols=98 Identities=13% Similarity=0.213 Sum_probs=67.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEecCCC-c
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLVKAG-S 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~vp~~-~ 81 (484)
.+|.|||+|.+|...+..+...|.+|.++|+++++.+.+...... .+. ...+.+++.+.+..+|+||.+++.+ .
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~----~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG----RIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc----eeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 479999999999999999999999999999999887776554321 011 1233444444445599999998431 1
Q ss_pred hHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
....++ ++....++++.+|||.+.
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEec
Confidence 111122 455566788999999774
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00018 Score=74.36 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +.. .+.+++++. +|+||.++...
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G-------~~v-~~leeal~~---aDVVItaTG~~--- 261 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDG-------FRV-MTMEEAAKI---GDIFITATGNK--- 261 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcC-------CEe-CCHHHHHhc---CCEEEECCCCH---
Confidence 5899999999999999999999999999999997754444322 332 356777665 99999887543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCCCh-HHHHHHHHHH
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNEWY-ENTERRQKAV 118 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~~~-~~~~~~~~~l 118 (484)
.+++ .....+++|.++++.+.... -+...+.+.+
T Consensus 262 -~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 262 -DVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred -HHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 3443 46677889999999988754 3444444433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=5.8e-05 Score=79.13 Aligned_cols=95 Identities=20% Similarity=0.239 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|+|||+|.||..++..|...|. +|+++||++++...+.+.... .+....+..+.+. .+|+||.|++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~~~~~l~---~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG----EAIPLDELPEALA---EADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC----cEeeHHHHHHHhc---cCCEEEECCCCCCc
Confidence 589999999999999999999997 799999999998877765321 1222233444444 49999999987754
Q ss_pred HH--HHHHHHhh-hcCCCCEEEecCC
Q 011501 83 VD--QTIKTLSV-YMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~--~vl~~l~~-~l~~g~iiId~st 105 (484)
+. +.++.... .-..+.++||.+.
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 32 22222111 1123467888863
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00012 Score=74.16 Aligned_cols=115 Identities=17% Similarity=0.222 Sum_probs=78.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|||||+|.+|...+..+... + ..|.+|||++++.+++.++.....+..+..+.+.+++++ +|+|++|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~----aDiVv~aTps~~ 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD----CDILVTTTPSRK 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh----CCEEEEecCCCC
Confidence 4799999999999999998853 3 378899999999988887543210112456778888774 899999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+ ++ ..++++|..|...++..|.. .++...+-.+.-.|+|.
T Consensus 206 P~---~~--~~~l~~g~hV~~iGs~~p~~-~El~~~~~~~a~vvvD~ 246 (326)
T PRK06046 206 PV---VK--AEWIKEGTHINAIGADAPGK-QELDPEILLRAKVVVDD 246 (326)
T ss_pred cE---ec--HHHcCCCCEEEecCCCCCcc-ccCCHHHHhCCcEEECC
Confidence 32 21 13568899988888776533 23333222223346664
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=70.56 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=72.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+||||||+|.||..++..+.+. +.++. ++++.... +...+.... ++..+++++++ . .++|+|+.|.|..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~-~~~~~~~~~----~~~~~~d~~~l-~--~~~DvVve~t~~~ 72 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSI-DAVRRALGE----AVRVVSSVDAL-P--QRPDLVVECAGHA 72 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCH-HHHhhhhcc----CCeeeCCHHHh-c--cCCCEEEECCCHH
Confidence 36999999999999999999876 45543 44543221 111111110 24667888887 3 3499999999886
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC---ChHHHHHHHHHHHHcCCe-EEeccCCCCHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE---WYENTERRQKAVAELGLL-YLGMGVSGGEE 135 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~-~i~~pv~gg~~ 135 (484)
...+..... +..|.-++..++. .+....++.+..++.|.. |+..+..|+-.
T Consensus 73 -~~~e~~~~a---L~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 73 -ALKEHVVPI---LKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred -HHHHHHHHH---HHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 334443333 4456555555553 233345566666666754 45555555543
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.81 E-value=6.5e-05 Score=74.30 Aligned_cols=117 Identities=16% Similarity=0.074 Sum_probs=76.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|+|.+|.+++..|+..| .+|+++||+.++.+.+.+...... .+....+..+.+. .+|+||.++|.+..
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~--~~~~~~~~~~~~~---~~DivInaTp~g~~ 198 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALG--KAELDLELQEELA---DFDLIINATSAGMS 198 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ceeecccchhccc---cCCEEEECCcCCCC
Confidence 47999999999999999999999 689999999999888876543110 0111112223333 49999999998742
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
-..-. .--...++++.+++|..-.+ ..| .+.+..+++|...++
T Consensus 199 ~~~~~~~~~~~~l~~~~~v~DivY~P-~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 199 GELPLPPLPLSLLRPGTIVYDMIYGP-LPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCCCCCCHHHcCCCCEEEEeecCC-CCC-HHHHHHHHCcCeecC
Confidence 10000 00113467789999997643 444 455666777765543
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9e-05 Score=74.52 Aligned_cols=97 Identities=18% Similarity=0.306 Sum_probs=66.4
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|..|...+..+.. .+ -+|.+|+|++++.++|.+..... +..+..+.++++++.. +|+|+.|+|...
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~v~~~~~~~~av~~---aDii~taT~s~~ 204 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDL-GVPVVAVDSAEEAVRG---ADIIVTATPSTT 204 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCC-CTCEEEESSHHHHHTT---SSEEEE----SS
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccc-cccceeccchhhhccc---CCEEEEccCCCC
Confidence 479999999999999888775 33 38999999999999998876541 3357889999999988 999999999876
Q ss_pred --hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 --PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 --~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
.+ ++ ..++++|..|+..++..|.
T Consensus 205 ~~P~---~~--~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 205 PAPV---FD--AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp EEES---B---GGGS-TT-EEEE-S-SSTT
T ss_pred CCcc---cc--HHHcCCCcEEEEecCCCCc
Confidence 32 21 2468899999888887664
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00029 Score=71.06 Aligned_cols=99 Identities=17% Similarity=0.223 Sum_probs=62.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH--H--HHHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDE--T--VERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~--~--~~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.||..+|..++..|+ +|.++|+++++.+. + .......+ ..++..+.+.+++ +. +|+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l-~~---aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDI-AG---SDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHh-CC---CCEEEECC
Confidence 589999999999999999999996 89999999985421 1 11100000 0135545666543 44 99999977
Q ss_pred CCC----c----------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAG----S----------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~----~----------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-.+ . .+.++++.+.++. +..++|..||..
T Consensus 83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~-p~a~~iv~sNP~ 131 (321)
T PTZ00082 83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYC-PNAFVIVITNPL 131 (321)
T ss_pred CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 321 1 1233345555555 444777777644
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0001 Score=77.24 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=54.3
Q ss_pred CeEEEEcccHHHHHHHH--HH----HhCCCcEEEEeCChhHHHHHHHHhhhc----C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLAL--NI----AEKGFPISVYNRTTSKVDETVERAKQE----G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~--~L----~~~G~~V~v~dr~~~~~~~~~~~~~~~----~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.||.+++. .+ ..+|++|.+||+++++.+......... + ..++..+++.++.++. +|+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~---AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDG---ADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcC---CCE
Confidence 48999999999998766 34 456789999999998876654322110 0 1146667788888777 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||++++.+
T Consensus 78 Vi~ai~~~ 85 (423)
T cd05297 78 VINTIQVG 85 (423)
T ss_pred EEEeeEec
Confidence 99999864
|
linked to 3D####ucture |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00028 Score=65.82 Aligned_cols=101 Identities=14% Similarity=0.104 Sum_probs=67.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++.|+|. |.+|..++..|++.|++|.+++|+.++.+.+.+......+..+.. ..+.+++.+.+.++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 58999995 999999999999999999999999998887765432100001222 234444334344599999999988
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
... .........++.+++|..-..
T Consensus 109 ~~~---~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VEL---LEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred cee---chhhhcccCceeEEEEccCCC
Confidence 531 111122344578899986554
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00023 Score=72.31 Aligned_cols=99 Identities=13% Similarity=0.121 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|..+...++.+.. .-.+|.+|+|++++.+++.++.... +..+..+.+++++++. +|+|+.++|...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~-~~~v~~~~~~~~av~~---ADIIvtaT~S~~ 205 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP-GLRIVACRSVAEAVEG---ADIITTVTADKT 205 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc-CCcEEEeCCHHHHHhc---CCEEEEecCCCC
Confidence 479999999999888776664 2348999999999999888765432 2246778899999998 999999997643
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. ..+++. .++++|..|.-.++..|.
T Consensus 206 ~-~Pvl~~--~~lkpG~hV~aIGs~~p~ 230 (346)
T PRK07589 206 N-ATILTD--DMVEPGMHINAVGGDCPG 230 (346)
T ss_pred C-CceecH--HHcCCCcEEEecCCCCCC
Confidence 1 122221 457899988877776653
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00019 Score=72.01 Aligned_cols=73 Identities=14% Similarity=0.237 Sum_probs=49.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCC--Cee-ecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNL--PLY-GFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~--~~~-~~~s~~e~~~~l~~advIi~~vp 78 (484)
|||+|||+|.+|.++|..|+.+| .+|.++|+++++.+...........+ ... .+.+.++ ++. +|+||++++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~-l~~---aDiViita~ 76 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYAD-CKG---ADVVVITAG 76 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHH-hCC---CCEEEEccC
Confidence 48999999999999999999999 58999999988765322111110000 011 1234433 343 999999998
Q ss_pred CC
Q 011501 79 AG 80 (484)
Q Consensus 79 ~~ 80 (484)
.+
T Consensus 77 ~~ 78 (308)
T cd05292 77 AN 78 (308)
T ss_pred CC
Confidence 64
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00041 Score=58.80 Aligned_cols=111 Identities=15% Similarity=0.222 Sum_probs=69.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCchH
Q 011501 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~v 83 (484)
|-|+|.|.+|..++..|.+.+.+|.+.|++++.++.+.+.+... +.+..+-.+..+ .+++++.++++++++...
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~----i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n 76 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEV----IYGDATDPEVLERAGIEKADAVVILTDDDEEN 76 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEE----EES-TTSHHHHHHTTGGCESEEEEESSSHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhccccc----ccccchhhhHHhhcCccccCEEEEccCCHHHH
Confidence 56899999999999999997779999999999999888765321 222222233333 345699999999876433
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..++..+....+...+++-..+. ...+.+...|+..+
T Consensus 77 ~~~~~~~r~~~~~~~ii~~~~~~------~~~~~l~~~g~d~v 113 (116)
T PF02254_consen 77 LLIALLARELNPDIRIIARVNDP------ENAELLRQAGADHV 113 (116)
T ss_dssp HHHHHHHHHHTTTSEEEEEESSH------HHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHCCCCeEEEEECCH------HHHHHHHHCCcCEE
Confidence 33333333333334555544432 22444555666554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00015 Score=71.90 Aligned_cols=118 Identities=13% Similarity=0.107 Sum_probs=77.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|.|||+|.+|.+++..|+..|. +|+++||+.++.+.+.+...... ...+....+..+.+. .+|+||.++|.+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~---~aDiVInaTp~Gm 204 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALA---AADGLVHATPTGM 204 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhC---CCCEEEECCcCCC
Confidence 479999999999999999999997 79999999999988876542110 001112233333333 4999999998762
Q ss_pred hHHHHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.-..-. .+ ...+.++.+++|..-.+. .| .+.+..+++|...++
T Consensus 205 ~~~~~~-~~~~~~l~~~~~v~DivY~P~-~T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 205 AKHPGL-PLPAELLRPGLWVADIVYFPL-ET-ELLRAARALGCRTLD 248 (284)
T ss_pred CCCCCC-CCCHHHcCCCcEEEEeeeCCC-CC-HHHHHHHHCCCeEec
Confidence 111000 01 124677889999876553 33 455666777776544
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00034 Score=67.69 Aligned_cols=118 Identities=12% Similarity=0.141 Sum_probs=74.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC---Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG---FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G---~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+||||||+|.||..++..|.+.+ ++ +.+|+|++++.+.+... ...+.++++++.. ++|+|+.|-..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------~~~~~~l~~ll~~--~~DlVVE~A~~ 72 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------VALLDGLPGLLAW--RPDLVVEAAGQ 72 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------CcccCCHHHHhhc--CCCEEEECCCH
Confidence 59999999999999999987542 44 45688988887776542 4578899997432 39999999765
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChH--HHH-HHHHHHHHcC-CeEEeccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYE--NTE-RRQKAVAELG-LLYLGMGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~--~~~-~~~~~l~~~g-~~~i~~pv~gg~~ 135 (484)
. ++++....++ ..|.-++-.|.+-.. ... ++.+..++.| -.|+..+-.||-.
T Consensus 73 ~-av~e~~~~iL---~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 73 Q-AIAEHAEGCL---TAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred H-HHHHHHHHHH---hcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 4 5665555544 445444444443322 222 3333334433 3456666555543
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=68.09 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=69.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCC-hhHHH-HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRT-TSKVD-ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~-~~~~~-~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|+| +|.||..+++.+.+ .++++. ++||+ ++... .+....... ..++..+++++++.. .+|+||.++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~-~~gv~~~~d~~~l~~---~~DvVIdfT~ 77 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIG-KVGVPVTDDLEAVET---DPDVLIDFTT 77 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcC-cCCceeeCCHHHhcC---CCCEEEECCC
Confidence 5999999 69999999999986 467654 57854 32211 111110000 013556788888733 3899999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEe-cCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIID-GGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId-~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+. ...+.+.. .+..|.-+|. ++...+....++.+..++.|+.++-+|
T Consensus 78 p~-~~~~~~~~---al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~ 125 (266)
T TIGR00036 78 PE-GVLNHLKF---ALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAP 125 (266)
T ss_pred hH-HHHHHHHH---HHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEEC
Confidence 75 44444433 3445544444 444444455555555556566555544
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00043 Score=68.55 Aligned_cols=119 Identities=18% Similarity=0.146 Sum_probs=76.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||+|-+|++++..|++.|. +|+++||++++.+.+.+...... .+......+++...+..+|+||-|+|.+..
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~--~~~~~~~~~~~~~~~~~~DiVInaTp~g~~ 203 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVG--VITRLEGDSGGLAIEKAAEVLVSTVPADVP 203 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcC--cceeccchhhhhhcccCCCEEEECCCCCCC
Confidence 479999999999999999999997 69999999999988876542210 122222223332333459999999998754
Q ss_pred HHHH-HHHHh-----hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 83 VDQT-IKTLS-----VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 83 v~~v-l~~l~-----~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+.. +.... ..+.++.+++|.--.+ ..| .+.+..+++|...+
T Consensus 204 ~~~~~l~~~~~~~~~~~~~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~ 251 (282)
T TIGR01809 204 ADYVDLFATVPFLLLKRKSSEGIFLDAAYDP-WPT-PLVAIVSAAGWRVI 251 (282)
T ss_pred CCHHHhhhhhhhhccccCCCCcEEEEEeeCC-CCC-HHHHHHHHCCCEEE
Confidence 3321 11111 1234677899987543 333 34455566676544
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=71.00 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=60.9
Q ss_pred EEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHH----HHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETV----ERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~----~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|||+|.||..+|..|+.+|+ +|+++|+++++.+... ....... ..+++.+.+.++ ++. ||+||+++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~-l~d---ADiVIit~g~ 76 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYED-IAG---SDVVVITAGI 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHH-hCC---CCEEEEecCC
Confidence 6899999999999999998877 9999999987643221 1110000 013444455544 344 9999998843
Q ss_pred Cc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .++++++.+.+.. +..++|..||-.
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~-p~~~iIv~sNP~ 118 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYA-PNAIVIVVTNPL 118 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 21 1334445666655 455666666543
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00024 Score=73.90 Aligned_cols=90 Identities=12% Similarity=0.061 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..+|..+...|.+|+++|+++.+.......+ +. ..+.+++++. +|+||.++...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G-------~~-v~~l~eal~~---aDVVI~aTG~~--- 278 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDG-------FR-VMTMEEAAEL---GDIFVTATGNK--- 278 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcC-------CE-ecCHHHHHhC---CCEEEECCCCH---
Confidence 5799999999999999999999999999999988765443322 23 2367777765 99999987543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~~~ 108 (484)
.+++ .....+++|.++++.+....
T Consensus 279 -~vI~~~~~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 279 -DVITAEHMEAMKDGAILANIGHFDN 303 (425)
T ss_pred -HHHHHHHHhcCCCCCEEEEcCCCCC
Confidence 3443 56677889999999987754
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00031 Score=68.65 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=70.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||+|+|+ |.||..++..+.+. ++++. ++|+++++.... . .+++..+++++++++. +|+|+.++|+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~-~------~~~i~~~~dl~~ll~~---~DvVid~t~p 70 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ-G------ALGVAITDDLEAVLAD---ADVLIDFTTP 70 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc-C------CCCccccCCHHHhccC---CCEEEECCCH
Confidence 369999998 99999999988864 67655 589988765443 1 1135567788888764 9999988866
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ...+++... ++.|.-++..+|. .+....++.+ +. +++..+-+|
T Consensus 71 ~-~~~~~~~~a---l~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~ 115 (257)
T PRK00048 71 E-ATLENLEFA---LEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAP 115 (257)
T ss_pred H-HHHHHHHHH---HHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEEC
Confidence 5 334444333 4455555544444 4444444444 33 444444444
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00025 Score=72.97 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=56.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++.|||+|.||.-.|++|+++| ..|++.||+.+++.++.++... . ..+++++...+..+|+||+++..+.
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~------~-~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGA------E-AVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCC------e-eecHHHHHHhhhhCCEEEEecCCCc
Confidence 57999999999999999999999 5899999999999998876531 1 2345555555555999999986654
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0006 Score=69.56 Aligned_cols=112 Identities=17% Similarity=0.248 Sum_probs=74.5
Q ss_pred CC-CCeEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MV-QTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+ +.||||||+|.+|.. .+..+.+. +.++. ++|+++++.. +... ....+++++++++. .+.|+|++|
T Consensus 1 m~~~irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~ell~~-~~vD~V~I~ 71 (346)
T PRK11579 1 MSDKIRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK---ADWP-----TVTVVSEPQHLFND-PNIDLIVIP 71 (346)
T ss_pred CCCcceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH---hhCC-----CCceeCCHHHHhcC-CCCCEEEEc
Confidence 54 369999999999984 56666553 56664 7899987643 1111 24567899999864 347999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+|+..+.+.++..+ +.|+ ++++- -.....+..++.+..++.|+.+
T Consensus 72 tp~~~H~~~~~~al----~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 72 TPNDTHFPLAKAAL----EAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred CCcHHHHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 99987766655443 3444 44442 1223466777777777777654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0005 Score=68.97 Aligned_cols=98 Identities=9% Similarity=0.144 Sum_probs=63.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcC---CCCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEG---NLPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|.++|..|+..| ++|.++|+++++.+.+........ ...... ..+.++ +.. +|+||+++
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~-l~~---aDIVIita 76 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSD-CKD---ADIVVITA 76 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHH-hCC---CCEEEEcc
Confidence 38999999999999999999999 589999999988766554321100 001112 234443 344 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..+. .++++.+.+..+- +..+||..||-
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~-~~~~vivvsNP 119 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASG-FDGIFLVASNP 119 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEecCh
Confidence 6541 1233345555544 45567777753
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00035 Score=61.79 Aligned_cols=99 Identities=16% Similarity=0.264 Sum_probs=60.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC-CC--CeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG-NL--PLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~-~~--~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+ |.+|..+|..|...+. ++.++|+++++++.......... .. +........+.++. +|+||++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~---aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKD---ADIVVITA 77 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTT---ESEEEETT
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccccccccc---ccEEEEec
Confidence 59999999 9999999999998875 79999999876554432211100 00 12222233333444 99999987
Q ss_pred CCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
-.+ .. ++++.+.+..+- +..+++-.||-
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~-p~~~vivvtNP 120 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYA-PDAIVIVVTNP 120 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHS-TTSEEEE-SSS
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhC-CccEEEEeCCc
Confidence 432 11 223334555554 55566666654
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00033 Score=73.16 Aligned_cols=89 Identities=10% Similarity=0.064 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|+|+|.+|..+|+.+...|.+|+++++++.+.......+ +.. .+.++++.. +|+||.+......+
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-------~~v-v~leEal~~---ADVVI~tTGt~~vI 323 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-------YQV-LTLEDVVSE---ADIFVTTTGNKDII 323 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-------Cee-ccHHHHHhh---CCEEEECCCCccch
Confidence 5799999999999999999999999999999987654443322 222 367777776 99999876543221
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~ 106 (484)
....+..+++|.++++.+..
T Consensus 324 ---~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 324 ---MVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred ---HHHHHhcCCCCCEEEEcCCC
Confidence 24566778999999999884
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=62.82 Aligned_cols=95 Identities=19% Similarity=0.278 Sum_probs=59.8
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCC-c-EEEEeCChhHHHHHHHHhhhcCCC-CeeecC-CHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGF-P-ISVYNRTTSKVDETVERAKQEGNL-PLYGFH-DPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~-~-V~v~dr~~~~~~~~~~~~~~~~~~-~~~~~~-s~~e~~~~l~~advIi~~vp~ 79 (484)
||+||| .|.+|..+.+.|.++-+ + +.++.++.+.-..+........+. .+...+ +.+++ .. +|+||+|+|+
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~Dvvf~a~~~ 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL-SD---VDVVFLALPH 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH-TT---ESEEEE-SCH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh-hc---CCEEEecCch
Confidence 799999 99999999999999643 4 556777763333333321100000 122222 33444 44 9999999988
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ...+....+ +.+|..|||.|+..
T Consensus 77 ~-~~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 77 G-ASKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp H-HHHHHHHHH---HHTTSEEEESSSTT
T ss_pred h-HHHHHHHHH---hhCCcEEEeCCHHH
Confidence 6 445555554 45788999999876
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00041 Score=61.32 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=76.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|.|||+|.+|..++.+|++.|+ +++++|.+.-....+..+..- ....+..-.....+.++.+. +++-+.+.+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~-p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELN-PGVNVTAVPEGIS 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHC-CCcEEEEEeeecC
Confidence 58999999999999999999998 799999875443333321100 00000011122233333322 4566656554321
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
... ....+.+-++||+++.. +.....+.+.+.+.++.|+++...|
T Consensus 80 ~~~----~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 80 EDN----LDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhh----HHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 111 13445677999999887 4556667788888899999998776
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00062 Score=68.66 Aligned_cols=100 Identities=14% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHH---HhhhcCC--CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVE---RAKQEGN--LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~---~~~~~~~--~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.||..+|..++..| .++.+||+++++.+...- ......+ .+++...+++++ +. +|+||++
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l-~~---ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDI-KD---SDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHh-CC---CCEEEEC
Confidence 468999999999999999999988 689999999876432111 0100000 023444566643 44 9999999
Q ss_pred c--CCC-------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 V--KAG-------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 v--p~~-------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. |.. ..+.++.+.+.++. +..++|..||..
T Consensus 81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~-p~a~vivvsNP~ 125 (319)
T PTZ00117 81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYC-PNAFVICVTNPL 125 (319)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecChH
Confidence 8 322 12445556666654 566677776644
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00056 Score=59.47 Aligned_cols=98 Identities=14% Similarity=0.071 Sum_probs=72.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|.+||+| .|..+|..|++.|++|++.|.+++.++.+.+.+...- .-..++..-++-+. +|+|..+=|+. .+
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v--~dDlf~p~~~~y~~---a~liysirpp~-el 90 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAF--VDDLFNPNLEIYKN---AKLIYSIRPPR-DL 90 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEE--ECcCCCCCHHHHhc---CCEEEEeCCCH-HH
Confidence 579999999 9999999999999999999999999887766542100 00112233355565 99999998887 56
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
..-+-.++..+...-+|...|+..|
T Consensus 91 ~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 91 QPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 6666677777766667777777654
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0008 Score=73.22 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=76.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~ 82 (484)
+|-|+|+|.+|+.+++.|.++|++|.+.|.|+++++++.+.+.. -+....+.+++.+ .++++|.++++++++..
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~----~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~ 494 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIR----AVLGNAANEEIMQLAHLDCARWLLLTIPNGYE 494 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCe----EEEcCCCCHHHHHhcCccccCEEEEEcCChHH
Confidence 58899999999999999999999999999999999888764321 1223333344443 34579999999988755
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++..+....+.-.++.-. + .+ +..+.+++.|+.++-.|
T Consensus 495 ~~~iv~~~~~~~~~~~iiar~-~-~~----~~~~~l~~~Gad~vv~p 535 (558)
T PRK10669 495 AGEIVASAREKRPDIEIIARA-H-YD----DEVAYITERGANQVVMG 535 (558)
T ss_pred HHHHHHHHHHHCCCCeEEEEE-C-CH----HHHHHHHHcCCCEEECh
Confidence 444444444433222344333 2 22 23334556788777655
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=67.29 Aligned_cols=110 Identities=12% Similarity=0.167 Sum_probs=78.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
..||||||+ .||...+..+.+.. ++ |.++|+++++.+++.++. ++..+++.+++++. .|++++++|+
T Consensus 3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~------gi~~y~~~eell~d---~Di~~V~ipt 72 (343)
T TIGR01761 3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRL------GVPLYCEVEELPDD---IDIACVVVRS 72 (343)
T ss_pred CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHh------CCCccCCHHHHhcC---CCEEEEEeCC
Confidence 358999999 68999999998754 55 457899999998888754 35578899999876 7888888754
Q ss_pred ----CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 ----GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ----~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+-+.. .++.|.-|+---.....+++++.+..+++|+.+.
T Consensus 73 ~~P~~~H~e~a~~----aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 73 AIVGGQGSALARA----LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred CCCCccHHHHHHH----HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344443332 3445655554333346788888888888888765
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00017 Score=61.55 Aligned_cols=104 Identities=13% Similarity=0.216 Sum_probs=72.4
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+||| -+.+|.-+..+|.++|++|+..|...+.+. +...+.+++|.-.. .|++++++|.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~------------G~~~y~sl~e~p~~---iDlavv~~~~ 65 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL------------GIKCYPSLAEIPEP---IDLAVVCVPP 65 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET------------TEE-BSSGGGCSST----SEEEE-S-H
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC------------cEEeeccccCCCCC---CCEEEEEcCH
Confidence 3799999 789999999999999999999987753321 36778898884344 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
. .+.++++++... ..+.+|+..++ ..+++.+.+++.|+.+++.
T Consensus 66 ~-~~~~~v~~~~~~-g~~~v~~~~g~----~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 66 D-KVPEIVDEAAAL-GVKAVWLQPGA----ESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp H-HHHHHHHHHHHH-T-SEEEE-TTS------HHHHHHHHHTT-EEEES
T ss_pred H-HHHHHHHHHHHc-CCCEEEEEcch----HHHHHHHHHHHcCCEEEeC
Confidence 6 788888887764 45677777773 4456667777889988864
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00049 Score=64.27 Aligned_cols=189 Identities=12% Similarity=0.115 Sum_probs=110.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+.+|+||.|..|......-...++... +-.|++++.+.+.+. ....+.++.+..+..+++|.-+|+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~----------~~a~p~d~~~~ael~~~vfv~vpd~-~ 79 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAET----------YVAPPLDVAKSAELLLLVFVDVPDA-L 79 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhc----------cCCCccchhhChhhhceEEecchHH-H
Confidence 579999999999996554444444443 336787777665432 2234444444433367888888775 3
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE---Eec-cCCCCHHhhh--cCCccc-cCCCHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY---LGM-GVSGGEEGAR--YGPSLM-PGGSFEAYKHI 155 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~---i~~-pv~gg~~~a~--~g~~i~-~gg~~~~~~~v 155 (484)
+..+.... .-.+|+++++||...-. .+.+.+.+.|..- ... -.+|.++... .++.|. ..+|.--+..+
T Consensus 80 ~s~vaa~~--~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~ 154 (289)
T COG5495 80 YSGVAATS--LNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIV 154 (289)
T ss_pred HHHHHHhc--ccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHH
Confidence 33333222 24589999999987633 3444455544322 221 2455555544 233332 25676677778
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 156 EDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 156 ~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
+.+...||.+. +-+ .++.--.-....|--..-...++.|+..+.+..| .|.-+
T Consensus 155 q~la~emgg~~-------f~V-~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag-~Dq~e 207 (289)
T COG5495 155 QSLALEMGGEP-------FCV-REEARILYHAAAVHASNFIVTVLADALEIYRAAG-DDQPE 207 (289)
T ss_pred HHHHHHhCCCc-------eee-chhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhc-CCCcc
Confidence 88888888763 222 2233323333333333345677889999999998 87443
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00098 Score=63.48 Aligned_cols=190 Identities=17% Similarity=0.204 Sum_probs=111.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHH-HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDE-TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~-~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+|||||.|.|...++..+.+.|. ++..+-.+...... +... ++..+.+..+.++. +|+++++|.
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~-------g~~~~~~n~~~~~~---s~v~~~svK 70 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEAL-------GVKTVFTNLEVLQA---SDVVFLSVK 70 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcC-------CceeeechHHHHhh---ccceeEeec
Confidence 479999999999999999999985 55666553222222 3322 24444455777776 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCCccccCC---CHHHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGPSLMPGG---SFEAYKH 154 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~~i~~gg---~~~~~~~ 154 (484)
+. .+..++.++.+.+..+++|+.+--...-.+ +.+.+. ...+++- +| -.+....+|.+++.-| ..+..+.
T Consensus 71 p~-~i~~vls~~~~~~~~~~iivS~aaG~tl~~--l~~~l~-~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l 144 (267)
T KOG3124|consen 71 PQ-VIESVLSEIKPKVSKGKIIVSVAAGKTLSS--LESKLS-PPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLEL 144 (267)
T ss_pred ch-hHHHHhhcCccccccceEEEEEeecccHHH--HHHhcC-CCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHH
Confidence 75 788888888887788999998766543222 223332 1122332 12 1233445565444333 3455578
Q ss_pred HHHHHHHHhccCCCCCCceE-EeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCHHHHHHH
Q 011501 155 IEDILLKVAAQVPDSGPCVT-YVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLSNEELQQV 221 (484)
Q Consensus 155 v~~ll~~i~~~~~~~~~~~~-~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~ 221 (484)
++.+|..+|.-..=.++|+- +.|-.|+|-. | .-.+.|++.= .-+.| ++.+...++
T Consensus 145 ~~~ll~~vG~~~evpE~~iDavTgLsGSgPA---------y--~f~~ieaLadGgVkmG-lPr~lA~~l 201 (267)
T KOG3124|consen 145 VEELLSAVGLCEEVPEKCIDAVTGLSGSGPA---------Y--VFVAIEALADGGVKMG-LPRQLAYRL 201 (267)
T ss_pred HHHHHHhcCcceeCcHHhhhHHhhccCCcHH---------H--HHHHHHHHhccccccC-CCHHHHHHH
Confidence 88999998852211223332 2233455543 1 1222344321 23455 888776665
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00079 Score=55.29 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 259 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~ 259 (484)
-+++++|++.|.+.+..+++++|...+|++.| +|..++.+.+. .. .+. ....+..+..+++.++.+.+.
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~g-iD~~~V~~~~~---~d---~ri---~~~~~~pg~g~GG~ClpkD~~- 70 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLG-IDVYEVIEAAN---TD---PRI---GPHYLRPGPGFGGSCLPKDPY- 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBHHHHHHHHH---TS---TTT---TSSS-S-SSS--SSCHHHHHH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHc---cC---ccc---ccccCCCCCCCCCcchhhhHH-
Confidence 36899999999999999999999999999999 99999988873 21 111 122333333455555554432
Q ss_pred hcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 260 KTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 260 ~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.....+.++|.+.+++.++
T Consensus 71 ---------~L~~~~~~~g~~~~ll~~~ 89 (96)
T PF00984_consen 71 ---------ALIYLAKELGYPPQLLEAV 89 (96)
T ss_dssp ---------HHHHHHHHTTSHHHHHHHH
T ss_pred ---------HHHHHHHHcCCCHHHHHHH
Confidence 4567899999998877654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=68.61 Aligned_cols=122 Identities=21% Similarity=0.262 Sum_probs=76.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC-C-cEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG-F-PISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G-~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|.|+|.|.+|+.++..|++.+ + +|++.||+.++.+++.+..... ++.. ..+.+++.+-++.+|+||.|+|.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~---~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGD---RVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTT---TEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcccc---ceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999999999999999987 4 8999999999988887531100 1211 23444444444559999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEE 135 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~ 135 (484)
. .-..+++... ..|.-+||.+. ......++.+..+++|+.++. ++...|..
T Consensus 78 ~-~~~~v~~~~i---~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 78 F-FGEPVARACI---EAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp G-GHHHHHHHHH---HHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred c-hhHHHHHHHH---HhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 6 4455554443 45778899333 234555566667777876654 56665543
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00034 Score=63.67 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=56.5
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|.| |..+|.+|.+.|.+|++.+|+.+ ++.+.+.+ +|+||.+++.+..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~---------------------~l~~~l~~---aDiVIsat~~~~i 100 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK---------------------NLKEHTKQ---ADIVIVAVGKPGL 100 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch---------------------hHHHHHhh---CCEEEEcCCCCce
Confidence 58999999997 88899999999999999998742 22234455 9999999988742
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .+ .++++.+|||.+...
T Consensus 101 i~---~~---~~~~~~viIDla~pr 119 (168)
T cd01080 101 VK---GD---MVKPGAVVIDVGINR 119 (168)
T ss_pred ec---HH---HccCCeEEEEccCCC
Confidence 11 12 356788999998653
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0013 Score=72.24 Aligned_cols=118 Identities=13% Similarity=0.157 Sum_probs=78.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+.+.+.+ -+.+..+-.++.+ .++++|.+++++++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vvv~~~d~~ 476 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 476 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCe----EEEEeCCCHHHHHhcCCCcCCEEEEEeCCHH
Confidence 468899999999999999999999999999999999988765432 1223334444553 4567999999998875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
....++..+....+.-.+++-+.+ . +....+.+.|+..+..+..
T Consensus 477 ~n~~i~~~ar~~~p~~~iiaRa~d--~----~~~~~L~~~Gad~v~~e~~ 520 (621)
T PRK03562 477 TSLQLVELVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKPERETF 520 (621)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEEehhhH
Confidence 554444444433322244443322 1 2345566678877754433
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00056 Score=70.94 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=68.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|+|+|+|.+|..++..+...|.+|+++|+++.+.+.....+ +.. .+.++.+.. +|+||.++...
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G-------~~~-~~~~e~v~~---aDVVI~atG~~--- 268 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG-------YEV-MTMEEAVKE---GDIFVTTTGNK--- 268 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC-------CEE-ccHHHHHcC---CCEEEECCCCH---
Confidence 4799999999999999999999999999999998876655433 222 245566655 99999987543
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCC
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~ 106 (484)
.++. .....+++|.++++.+..
T Consensus 269 -~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 269 -DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -HHHHHHHHhcCCCCcEEEEeCCC
Confidence 2343 446778899999998854
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00061 Score=67.11 Aligned_cols=105 Identities=16% Similarity=0.201 Sum_probs=83.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+.+||+|+|.+|+.+|.++..-|..|..||.-... +...+. +++ ..+.+|+... +|+|-+-+|-..++
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~-------gvq-~vsl~Eil~~---ADFitlH~PLtP~T 214 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAF-------GVQ-LVSLEEILPK---ADFITLHVPLTPST 214 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhc-------cce-eeeHHHHHhh---cCEEEEccCCCcch
Confidence 57999999999999999999999999999754321 122222 233 3488888887 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~ 120 (484)
+.++ +.....+++|-.||+++.+..-+...+.+.+..
T Consensus 215 ~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 215 EKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred hhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 8888 456667899999999999988888888777654
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0011 Score=65.80 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=65.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHH-HHHHHhhhcCCCCeee-cCCHhHHHhh--cCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVD-ETVERAKQEGNLPLYG-FHDPESFVHS--IQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~-~~~~~~~~~~~~~~~~-~~s~~e~~~~--l~~advIi 74 (484)
|.+.||||||+|.+|..+...+.+. +.++ .++|+++++.. ...++. ++.. +.+.+++++. ++..|+||
T Consensus 2 m~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~------Gi~~~~~~ie~LL~~~~~~dIDiVf 75 (302)
T PRK08300 2 MSKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL------GVATSAEGIDGLLAMPEFDDIDIVF 75 (302)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc------CCCcccCCHHHHHhCcCCCCCCEEE
Confidence 3467899999999999988888764 4555 46799886432 222221 2333 4678888863 34589999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.++|...+.+ .... ..+.|..+||.+...
T Consensus 76 ~AT~a~~H~e-~a~~---a~eaGk~VID~sPA~ 104 (302)
T PRK08300 76 DATSAGAHVR-HAAK---LREAGIRAIDLTPAA 104 (302)
T ss_pred ECCCHHHHHH-HHHH---HHHcCCeEEECCccc
Confidence 9998864322 2222 345788999988764
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00069 Score=69.81 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=70.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--C-CcEEEEeCChhHHHHHHHHhhhcC-CC-CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--G-FPISVYNRTTSKVDETVERAKQEG-NL-PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G-~~V~v~dr~~~~~~~~~~~~~~~~-~~-~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+++|||+|.++......++.- . -+|.+|||++++.+.|.++..... +. .+..+.++++++.. +|+|+.|++
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~---ADIVvtaT~ 232 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRG---SDIVTYCNS 232 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcC---CCEEEEccC
Confidence 4799999999999999888762 2 389999999999998887654320 11 26778999999988 999999997
Q ss_pred CCch---HHHHHHHHhhhcCCCCEEEecCC
Q 011501 79 AGSP---VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 79 ~~~~---v~~vl~~l~~~l~~g~iiId~st 105 (484)
.... ...+++ ..++++|..|+..+.
T Consensus 233 s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 233 GETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 6431 112221 235778887765443
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=72.29 Aligned_cols=114 Identities=11% Similarity=0.172 Sum_probs=76.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+.+.+.. -+.+..+-.++.+ .++++|.++++++++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~----v~~GDat~~~~L~~agi~~A~~vv~~~~d~~ 476 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYK----VYYGDATQLELLRAAGAEKAEAIVITCNEPE 476 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCe----EEEeeCCCHHHHHhcCCccCCEEEEEeCCHH
Confidence 468999999999999999999999999999999999988765422 1223334444444 3467999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
....++..+....+.-.+++-+.+. ...+.+.+.|...+-
T Consensus 477 ~n~~i~~~~r~~~p~~~IiaRa~~~------~~~~~L~~~Ga~~vv 516 (601)
T PRK03659 477 DTMKIVELCQQHFPHLHILARARGR------VEAHELLQAGVTQFS 516 (601)
T ss_pred HHHHHHHHHHHHCCCCeEEEEeCCH------HHHHHHHhCCCCEEE
Confidence 5555555544433333444433321 334455666776553
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00032 Score=73.10 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=55.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||+|.||..++.+|+..|. +++++||+.++.+.+.+..... .+...++..+.+. .+|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~---~~~~~~~l~~~l~---~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNA---SAHYLSELPQLIK---KADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCC---eEecHHHHHHHhc---cCCEEEECcCCCCe
Confidence 589999999999999999999996 7999999999988887753210 1222333344444 49999999988743
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0022 Score=64.38 Aligned_cols=99 Identities=16% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC----CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG----NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~----~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.+|.++|..|+..|. ++.++|+++++++.......... ...+..+.+++++ +. +|+||++
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~~-~~---adivvit 78 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSVT-AN---SKVVIVT 78 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHHh-CC---CCEEEEC
Confidence 4699999999999999999998875 79999998876544332211110 0024445677764 44 9999997
Q ss_pred cCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 122 (312)
T cd05293 79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKY-SPNAILLVVSNP 122 (312)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEccCh
Confidence 6432 11 22333455555 456677777753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0025 Score=63.37 Aligned_cols=118 Identities=11% Similarity=0.164 Sum_probs=87.0
Q ss_pred CeEEEEcccHHHHHHHHHHHh---CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAE---KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~---~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
-|+||+|+|.|+.-+++.|.- .+|.| .++||+.+++.+|.+...-. +.+.+.+.+|+++. ...|+|.+..|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~---~~k~y~syEeLakd-~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP---NPKAYGSYEELAKD-PEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC---CCccccCHHHHhcC-CCcCEEEeCCCC
Confidence 389999999999999998874 35654 57799999999998765311 35788999999987 335999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+++.+-++..+.. ...++++. -.......+++.+.++++|+.|.++
T Consensus 83 ~qH~evv~l~l~~---~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 83 PQHYEVVMLALNK---GKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred ccHHHHHHHHHHc---CCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 9776655433322 22355552 2234567888888899999888775
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0013 Score=64.37 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=65.1
Q ss_pred EEEEcc-cHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHHhhhcC----CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 6 IGLAGL-AVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKQEG----NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~~~~~~~~~~----~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+|||+ |.||..+|..|+..| .+|.+||+++++++.......... ..+++.++++.+.++. +|+||++
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~---aDiVv~t 77 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD---ADVVIIT 77 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC---CCEEEEC
Confidence 689999 999999999999988 799999999877555433221100 0135556666666666 9999996
Q ss_pred cCCC---------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAG---------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.-.+ ..++++.+.+..+. +..++|..||-.
T Consensus 78 ~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~-p~a~~i~~tNP~ 122 (263)
T cd00650 78 AGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYS-PDAWIIVVSNPV 122 (263)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCcH
Confidence 6321 12334445555554 666777776543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0017 Score=68.69 Aligned_cols=97 Identities=12% Similarity=0.224 Sum_probs=63.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhh-cCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHS-IQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~-l~~advIi~~vp~~~ 81 (484)
|+|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+..... -+.+. .+...+-+. ++++|.||++++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~---~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~- 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVR---TVVGNGSSPDVLREAGAEDADLLIAVTDSD- 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEE---EEEeCCCCHHHHHHcCCCcCCEEEEecCCh-
Confidence 4899999999999999999999999999999999988876522100 01111 122222222 45699999999886
Q ss_pred hHHHHHHHHhhhc-CCCCEEEecC
Q 011501 82 PVDQTIKTLSVYM-EKGDCIIDGG 104 (484)
Q Consensus 82 ~v~~vl~~l~~~l-~~g~iiId~s 104 (484)
.....+......+ +...+|+...
T Consensus 77 ~~n~~~~~~~r~~~~~~~ii~~~~ 100 (453)
T PRK09496 77 ETNMVACQIAKSLFGAPTTIARVR 100 (453)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4444343333333 3445555543
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=61.89 Aligned_cols=116 Identities=14% Similarity=0.165 Sum_probs=77.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCCCC-eeecCCHhHHHhhcCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGNLP-LYGFHDPESFVHSIQKP 70 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~~l~~a 70 (484)
.++|+|.|+|.+|..+++.|.+.|.+|+ +.|. +.+.+.+..+....-.++. ... -+.+++... .+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~-~~~~~i~~~--~~ 107 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAER-ITNEELLEL--DC 107 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCcee-cCCccceee--cc
Confidence 4689999999999999999999999988 6677 6555555443321100000 011 133444432 48
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+++-|.+.+.-..+.+..+. =++|+...|... +.+..+.|.++|+.|+.-
T Consensus 108 Dvlip~a~~~~i~~~~~~~l~-----a~~I~egAN~~~--t~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 108 DILIPAALENQITADNADRIK-----AKIIVEAANGPT--TPEADEILHERGVLVVPD 158 (227)
T ss_pred cEEEecCccCccCHHHHhhce-----eeEEEeCCCCCC--CHHHHHHHHHCCCEEECh
Confidence 999999987754445544442 367888888764 366778889999988754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00073 Score=68.87 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=58.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+||+|||+ |.+|..+++.|.++ ++++. ++++. +..+.+.+............+.+.++. ....+|+|++|+|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc
Confidence 369999996 99999999999987 56764 45543 222222221110000000012233332 12349999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+. ..+++..+. ..|..|||.|+...
T Consensus 79 ~~-~~~~v~~a~---~aG~~VID~S~~fR 103 (343)
T PRK00436 79 GV-SMDLAPQLL---EAGVKVIDLSADFR 103 (343)
T ss_pred HH-HHHHHHHHH---hCCCEEEECCcccC
Confidence 74 344444443 46899999998763
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0026 Score=60.44 Aligned_cols=114 Identities=15% Similarity=0.190 Sum_probs=74.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh----------hHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT----------SKVDETVERAKQEGNLPLYG--FHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~----------~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~ 69 (484)
.++|.|.|+|++|..+|+.|.+.|. .|.+.|.+. +.++...+.+... .... ..+.+++.. + .
T Consensus 23 g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~~-~-~ 97 (217)
T cd05211 23 GLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA---RVKVQDYFPGEAILG-L-D 97 (217)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc---ccCcccccCccccee-c-c
Confidence 4689999999999999999999988 566789887 6555444332111 0100 112234433 2 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+|+++-|.+.+.-..+.... + +=++|+...|.... .+..+.|.++|+.|+.-
T Consensus 98 ~DVlipaA~~~~i~~~~a~~----l-~a~~V~e~AN~p~t--~~a~~~L~~~Gi~v~Pd 149 (217)
T cd05211 98 VDIFAPCALGNVIDLENAKK----L-KAKVVAEGANNPTT--DEALRILHERGIVVAPD 149 (217)
T ss_pred ccEEeeccccCccChhhHhh----c-CccEEEeCCCCCCC--HHHHHHHHHCCcEEECh
Confidence 99999999877433333333 3 24677777776532 36677889999887754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0039 Score=62.76 Aligned_cols=72 Identities=13% Similarity=0.248 Sum_probs=49.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCC--CCeeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGN--LPLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~--~~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||+|.+|..+|..|+..|. ++.++|++.++++........... .+.... .+.++ ++. +|+||++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~-~~~---adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSD-CKD---ADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHH-hCC---CCEEEEecC
Confidence 589999999999999999999987 799999998876544432221100 012222 33444 344 999999764
Q ss_pred C
Q 011501 79 A 79 (484)
Q Consensus 79 ~ 79 (484)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 3
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0027 Score=64.68 Aligned_cols=130 Identities=15% Similarity=0.198 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCC----------hhHHHHHHHHhhhcCCC-CeeecCCHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRT----------TSKVDETVERAKQEGNL-PLYGFHDPE 61 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~----------~~~~~~~~~~~~~~~~~-~~~~~~s~~ 61 (484)
.+|+|+|+|.||..++..|.++ | .+ |.++|++ .+....+.+.......+ ......+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5899999999999999998865 3 44 3466853 33333333221100000 001234778
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEE-eccCCCCH
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYL-GMGVSGGE 134 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pv~gg~ 134 (484)
+++.. ..+|+|+.|+|+..+..+. .+-+...+..|.-||..+..... ...++.+..++.|..|. .+.+.+|-
T Consensus 83 ell~~-~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~gl 157 (341)
T PRK06270 83 EVIRS-VDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGAM 157 (341)
T ss_pred HHhhc-cCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeech
Confidence 88754 2489999999975432222 23334556678777765432211 23455555666777664 45555443
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0028 Score=64.62 Aligned_cols=113 Identities=9% Similarity=0.133 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHH-HHHHHHHh--CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQ-NLALNIAE--KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~-~lA~~L~~--~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.||||||+|.++. ..+..+.. .+++| .++|+++++. ++.+... .+..+++.+++++. ...|+|++|+|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~-----~~~~~~~~~ell~~-~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPIYS-----HIHFTSDLDEVLND-PDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEeCCc
Confidence 5899999999775 33454433 35666 4789997654 4443221 24567899999874 348999999999
Q ss_pred CchHHHHHHHHhhhcCCC-CEEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKG-DCIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..+.+.++..+. .| .++++. -.....+.+++.+..+++|+.+..
T Consensus 75 ~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 75 DSHFEYAKRALE----AGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred hHHHHHHHHHHH----cCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 877666554443 34 456652 122346777888887787776543
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0029 Score=63.25 Aligned_cols=96 Identities=15% Similarity=0.154 Sum_probs=62.0
Q ss_pred EEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCC----CCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGN----LPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~----~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|||+|.+|.++|..|+..| .++.++|+++++++........... ..+....+.+ .++. +|+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~-~l~~---aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA-DAAD---ADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH-HhCC---CCEEEEcCCC
Confidence 689999999999999999988 5899999999877665543221100 0122234443 3333 9999999865
Q ss_pred Cc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. .++++.+.+..+- +..++|..||-
T Consensus 77 p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~-p~~~viv~sNP 117 (300)
T cd00300 77 PRKPGETRLDLINRNAPILRSVITNLKKYG-PDAIILVVSNP 117 (300)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEccCh
Confidence 32 1333334555554 56667777753
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=69.45 Aligned_cols=122 Identities=20% Similarity=0.293 Sum_probs=75.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------C--Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--------G--FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--------G--~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
|++.+|||+|+|.||..++..|.++ | .+ +.++|+++++.+.+.. . ....+++++++++. ..
T Consensus 1 m~~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~-~------~~~~~~d~~~ll~d-~~ 72 (426)
T PRK06349 1 MKPLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDL-P------GILLTTDPEELVND-PD 72 (426)
T ss_pred CCeEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCC-c------ccceeCCHHHHhhC-CC
Confidence 6667999999999999999888654 3 33 4577998776432110 0 23467789998864 23
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
.|+|+.+++......+. +...+..|.-|+..... ......++.+..++.|+.| +++.+.||
T Consensus 73 iDvVve~tg~~~~~~~~---~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~gg 135 (426)
T PRK06349 73 IDIVVELMGGIEPAREL---ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGG 135 (426)
T ss_pred CCEEEECCCCchHHHHH---HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeecc
Confidence 79999998764332333 33456677777644321 1123344555556677754 44555544
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=67.59 Aligned_cols=97 Identities=16% Similarity=0.189 Sum_probs=60.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCC-Ceeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNL-PLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~-~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||+ |.+|..+.+.|.++ ++++. +++++....+.+......-.+. ..... .+.+++.+. +|++|+|+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAED---ADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcC---CCEEEECCC
Confidence 48999998 99999999999987 56777 5565543222222211100000 01111 144555444 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++ ...+++..+. ..|..|||.|+..
T Consensus 78 ~~-~s~~~~~~~~---~~G~~VIDlS~~f 102 (346)
T TIGR01850 78 HG-VSAELAPELL---AAGVKVIDLSADF 102 (346)
T ss_pred ch-HHHHHHHHHH---hCCCEEEeCChhh
Confidence 98 4444444443 4689999999875
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=53.70 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=72.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH--HHccCCCCCCcccc
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKK--AYDRNPDLANVLVD 399 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~--~~~~~~~~~~ll~~ 399 (484)
|+++-.|.++|-+.++.++.++|++.+-++. ++|..++.++-+.| .-.|+.++...+ ++.++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~------Gld~~~~~~vl~~~-~~~s~~~~~~~~~~~~~~~~~------- 66 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKA------GLDPEQLLDVLSAG-SGGSWMLKNRAPRMILNGDFD------- 66 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TS-HHHHHHHHHTS-TTHBHHHHHHHHHHHHTTTTC-------
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHccC-CcCchHHHhhhhhhhhcccCC-------
Confidence 4678899999999999999999999987753 39999999999877 457877776544 3332221
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
+.|. ++-..-+++-++..|-+.|+|+|..+.+.++|.
T Consensus 67 ~~f~--l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~ 103 (122)
T PF14833_consen 67 PGFS--LDLARKDLRLALDLAKEAGVPLPLGSAARQLYQ 103 (122)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHH
T ss_pred ccch--hHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 2221 222344568888999999999999999988665
|
... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0015 Score=63.99 Aligned_cols=96 Identities=15% Similarity=0.231 Sum_probs=73.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEec--CCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLV--KAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~v--p~~ 80 (484)
.||.|||.|.+|..-|+...--|-+|++.|+|.+++..+-..... ++ ...+++..+.+.+.++|++|-+| |..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~----rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG----RVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc----eeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 479999999999999999888899999999999998877654321 22 33455655555566699999776 444
Q ss_pred chHHHHHHHHhhhcCCCCEEEec
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
++-+-+.+++...++||.+|||.
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEE
Confidence 44444557888889999999986
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0056 Score=64.72 Aligned_cols=117 Identities=18% Similarity=0.203 Sum_probs=75.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eec-CCHhHHH-hhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGF-HDPESFV-HSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~-~s~~e~~-~~l~~advIi~~vp~ 79 (484)
+++|-|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+.+.. ..+ .+. .+.+.+. ..++++|.|++++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~---~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPN---TLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCC---CeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 4679999999999999999999999999999999998887765321 011 111 2233221 234569999988887
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+ ...-.+..++..+....+|+-+.+... .+.+...|+.++-.|
T Consensus 308 ~-~~n~~~~~~~~~~~~~~ii~~~~~~~~------~~~~~~~g~~~vi~p 350 (453)
T PRK09496 308 D-EANILSSLLAKRLGAKKVIALVNRPAY------VDLVEGLGIDIAISP 350 (453)
T ss_pred c-HHHHHHHHHHHHhCCCeEEEEECCcch------HHHHHhcCCCEEECH
Confidence 6 333333334444555566665554432 233455677665444
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00072 Score=61.63 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--------------------cCCHhH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--------------------FHDPES 62 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--------------------~~s~~e 62 (484)
..+|.|+|.|+.|..-+..+...|++|.++|.++++.+++...... .+.. ......
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY----FIEVDYEDHLERKDFDKADYYEHPESYESN 95 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE----ESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc----eEEEcccccccccccchhhhhHHHHHhHHH
Confidence 3589999999999999999999999999999999888776654321 1111 111112
Q ss_pred HHhhcCCCcEEEEec--CCCchHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 63 FVHSIQKPRVIIMLV--KAGSPVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 63 ~~~~l~~advIi~~v--p~~~~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
+.+.++.+|+||.++ |.. ....++ ++.+..++++.+|+|.|-
T Consensus 96 f~~~i~~~d~vI~~~~~~~~-~~P~lvt~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 96 FAEFIAPADIVIGNGLYWGK-RAPRLVTEEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HHHHHHH-SEEEEHHHBTTS-S---SBEHHHHHTSSTTEEEEETTG
T ss_pred HHHHHhhCcEEeeecccCCC-CCCEEEEhHHhhccCCCceEEEEEe
Confidence 222233389999744 333 222233 566677889999999864
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=64.08 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=58.5
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|. +|.++|..|.+.|.+|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t~---------------------~l~~~~~~---ADIVIsAvg~p~~ 214 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRSK---------------------DMASYLKD---ADVIVSAVGKPGL 214 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCch---------------------hHHHHHhh---CCEEEECCCCCcc
Confidence 5899999988 999999999999999999987531 33445555 9999999988743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 215 i~~------~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 215 VTK------DVVKEGAVIIDVGNTP 233 (286)
T ss_pred cCH------HHcCCCcEEEEcCCCc
Confidence 221 3578899999998753
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=64.38 Aligned_cols=72 Identities=17% Similarity=0.250 Sum_probs=46.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCc--EEEEeCCh--hHHHHHHHHh----hhcC-CCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFP--ISVYNRTT--SKVDETVERA----KQEG-NLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~--V~v~dr~~--~~~~~~~~~~----~~~~-~~~~~~~~s~~e~~~~l~~advI 73 (484)
|||+|||+ |.+|..++..|+..|+. |.++|+++ ++++...... ...+ ..++....+.++ +.. +|+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~-l~~---aDiV 76 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSD-VAG---SDIV 76 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHH-hCC---CCEE
Confidence 58999997 99999999999999874 99999965 3332221110 0000 002333445444 444 9999
Q ss_pred EEecCC
Q 011501 74 IMLVKA 79 (484)
Q Consensus 74 i~~vp~ 79 (484)
|+++..
T Consensus 77 iitag~ 82 (309)
T cd05294 77 IITAGV 82 (309)
T ss_pred EEecCC
Confidence 999863
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0016 Score=64.07 Aligned_cols=74 Identities=14% Similarity=0.274 Sum_probs=59.4
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|.. |.++|..|.+.|..|++++.. +.++.+.+++ +|+||.+++.+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~---------------------t~~l~~~~~~---ADIVV~avG~~~~ 214 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK---------------------TRDLAAHTRQ---ADIVVAAVGKRNV 214 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC---------------------CCCHHHHhhh---CCEEEEcCCCcCc
Confidence 57999999887 999999999999999998643 1245566666 9999999997743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 215 i~~------~~ik~gavVIDVGin~ 233 (285)
T PRK14189 215 LTA------DMVKPGATVIDVGMNR 233 (285)
T ss_pred cCH------HHcCCCCEEEEccccc
Confidence 332 5688999999998764
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0044 Score=58.16 Aligned_cols=33 Identities=27% Similarity=0.555 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT 35 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~ 35 (484)
..+|+|+|+|.||+.+|.+|++.|+ +++++|.+
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 3589999999999999999999999 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0022 Score=66.41 Aligned_cols=112 Identities=17% Similarity=0.200 Sum_probs=72.7
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChhHHHHHHHHhhh----cC-C-C-----Ceeec--CCHhHHHhhcCC
Q 011501 4 TRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTSKVDETVERAKQ----EG-N-L-----PLYGF--HDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~~~~~~~~~~~~----~~-~-~-----~~~~~--~s~~e~~~~l~~ 69 (484)
|||.++|.|+||+++ +..|.+.|++|+++|++++.++.+.+++.- .+ + . .+... .+.+++.+.+..
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~ 80 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE 80 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence 589999999999855 888889999999999999999888876420 00 1 0 11112 133445544455
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcC--------CCCEEEecCCCChHHHHHHHHH
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYME--------KGDCIIDGGNEWYENTERRQKA 117 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~--------~g~iiId~st~~~~~~~~~~~~ 117 (484)
+|+|.++|... ..+.+...+.+.|. ++-+|+.|-|.. .....+.+.
T Consensus 81 ~dlvt~~v~~~-~~~s~~~~l~~~L~~R~~~~~~~~~~VlsceN~~-~ng~~L~~~ 134 (381)
T PRK02318 81 ADLVTTAVGPN-ILPFIAPLIAKGLKKRKAQGNTKPLNIIACENMI-RGTSFLKKH 134 (381)
T ss_pred CCEEEeCCCcc-cchhHHHHHHHHHHHHHHcCCCCCCEEEecCChh-hHHHHHHHH
Confidence 89999888765 55666655555442 333788887775 333333333
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0034 Score=50.34 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=47.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++++|+|.|.+|..++..|.+. +.+|.+||| |++|.+++.+.
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------------------di~i~~~~~~~ 66 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------------------DILVTATPAGV 66 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------------------CEEEEcCCCCC
Confidence 36899999999999999999998 567888886 67777777664
Q ss_pred hHHHHHHHHhhhcCCCCEEEecC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~s 104 (484)
.+.+ +....+.++.+|+|++
T Consensus 67 ~~~~---~~~~~~~~~~~v~~~a 86 (86)
T cd05191 67 PVLE---EATAKINEGAVVIDLA 86 (86)
T ss_pred CchH---HHHHhcCCCCEEEecC
Confidence 4432 1234456788888863
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0033 Score=62.09 Aligned_cols=93 Identities=9% Similarity=0.151 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHH-HHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVD-ETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~-~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|||||+|.||..++..+.+. +.++. ++|+++++.. .+.+.. ++ ..+.+.+++++. +..|+|++++|+
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~------Gi~~~~~~~e~ll~~-~dIDaV~iaTp~ 74 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARAREL------GVKTSAEGVDGLLAN-PDIDIVFDATSA 74 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHC------CCCEEECCHHHHhcC-CCCCEEEECCCc
Confidence 5899999999999998887754 45654 6799887633 222221 23 234578888764 347999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+.+.. ...++.|..++|.+...
T Consensus 75 ~~H~e~a----~~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 75 KAHARHA----RLLAELGKIVIDLTPAA 98 (285)
T ss_pred HHHHHHH----HHHHHcCCEEEECCccc
Confidence 8654433 23355788999887654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.005 Score=58.95 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=68.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc---EEEEeCC----hhHH-------HHHHHHhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP---ISVYNRT----TSKV-------DETVERAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~---V~v~dr~----~~~~-------~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
++|-|+|.|.+|.++|..|.+.|.. |+++||+ .++. ..+.+.... .....++.+.++.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~-----~~~~~~l~~~l~~--- 97 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNP-----EKTGGTLKEALKG--- 97 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhcc-----CcccCCHHHHHhc---
Confidence 5899999999999999999999975 9999999 4443 222222110 0111255566655
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+|++|-++|.+....+.++ .+.++.+|++.++-.+ +...+...+.|..
T Consensus 98 ~dvlIgaT~~G~~~~~~l~----~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~ 145 (226)
T cd05311 98 ADVFIGVSRPGVVKKEMIK----KMAKDPIVFALANPVP---EIWPEEAKEAGAD 145 (226)
T ss_pred CCEEEeCCCCCCCCHHHHH----hhCCCCEEEEeCCCCC---cCCHHHHHHcCCc
Confidence 9999999986643333333 3446788889885432 2344444555664
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.003 Score=67.13 Aligned_cols=99 Identities=13% Similarity=0.144 Sum_probs=65.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc------------CCCCeeecCCH-h-----HHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE------------GNLPLYGFHDP-E-----SFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~------------~~~~~~~~~s~-~-----e~~~ 65 (484)
.++.|+|.|.+|...+..+...|..|+++|+++++.+.+...+... ++| .+..++. . .+.+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gY-a~~~s~~~~~~~~~~~~e 243 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGY-AKVMSEEFIAAEMELFAA 243 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccc-eeecCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999877666533210 000 0000000 0 0223
Q ss_pred hcCCCcEEEEec-----CCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 66 SIQKPRVIIMLV-----KAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 66 ~l~~advIi~~v-----p~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+|+||.++ |.+ .-+.++....+++|.+|||.+..
T Consensus 244 ~~~~~DIVI~TalipG~~aP---~Lit~emv~~MKpGsvIVDlA~d 286 (511)
T TIGR00561 244 QAKEVDIIITTALIPGKPAP---KLITEEMVDSMKAGSVIVDLAAE 286 (511)
T ss_pred HhCCCCEEEECcccCCCCCC---eeehHHHHhhCCCCCEEEEeeeC
Confidence 345589998888 333 11234556778888999988763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0081 Score=62.96 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=68.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|...+|.|||+|.+|.++|+.|.+.|++|+++|++++...... .... ....+.+.+... +|+||.+.+.+
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~-~~~~------~~~~~~~~~~~~---~dlvV~s~gi~ 70 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCP-YIHE------RYLENAEEFPEQ---VDLVVRSPGIK 70 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhH-HHhh------hhcCCcHHHhcC---CCEEEECCCCC
Confidence 5557899999999999999999999999999998876433211 0000 011233333344 89888887544
Q ss_pred ch---HHHHHH---------HHh-hh--c-CCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 81 SP---VDQTIK---------TLS-VY--M-EKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 81 ~~---v~~vl~---------~l~-~~--l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
.. +....+ .+. .. . ....|-|-.|+++-.++.-+...+...|...
T Consensus 71 ~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~ 131 (418)
T PRK00683 71 KEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPA 131 (418)
T ss_pred CCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCe
Confidence 21 222211 111 11 1 2223556667777556666677777766433
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=66.06 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHH--HHH----hCCCcEEEEeCChhHHHHHHH---Hhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLAL--NIA----EKGFPISVYNRTTSKVDETVE---RAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~--~L~----~~G~~V~v~dr~~~~~~~~~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.||...+. .++ -.|.+|.++|+++++.+.... ..... + ..++..+++..+.++. +|+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~d---ADf 78 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQG---ADY 78 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCC---CCE
Confidence 68999999999977665 554 235689999999988663221 11110 0 1146667787777776 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||+++-.+
T Consensus 79 Vv~ti~vg 86 (431)
T PRK15076 79 VINAIQVG 86 (431)
T ss_pred EeEeeeeC
Confidence 99998765
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0057 Score=62.26 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhc------------CCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQE------------GNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~------------~~~~~~~~~s~~e~~~~l~ 68 (484)
|+||||+|+|.||+.+++.+.++ +++|. ++|++++....+.+..+-. ++.++....+++++...
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~-- 78 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEK-- 78 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhcc--
Confidence 36899999999999999988865 56655 4577765554444321000 00023344555555544
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 69 KPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 69 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+|+||.|+|... ..+... .++..|..+|+.+..
T Consensus 79 -vDVVIdaT~~~~-~~e~a~---~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 79 -ADIVVDATPGGV-GAKNKE---LYEKAGVKAIFQGGE 111 (341)
T ss_pred -CCEEEECCCchh-hHHHHH---HHHHCCCEEEEcCCC
Confidence 777777776652 222222 233456666666654
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0056 Score=60.89 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCCh---hHHHHHHHHhhhcC-CCCeeec--CCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTT---SKVDETVERAKQEG-NLPLYGF--HDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~---~~~~~~~~~~~~~~-~~~~~~~--~s~~e~~~~l~~advIi~~ 76 (484)
+++.|+|.|-+|.+++..|++.|.+ |+++||++ ++.+++.+.....+ ...+..+ .+.+++.+.++.+|+||-+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4688999999999999999999996 99999997 66666554332110 0001111 1222332223348999999
Q ss_pred cCCCchH--HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 77 VKAGSPV--DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 77 vp~~~~v--~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+|.+..- +. .+.. ...+.++.+++|.--.+.. | .+.+..++.|...++
T Consensus 207 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 207 TLVGMKPNDGETNIKD-TSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVG 257 (289)
T ss_pred CCCCCCCCCCCCCCCc-HHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeC
Confidence 9876311 10 0000 1346678899998765433 3 345555666765443
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0046 Score=60.93 Aligned_cols=118 Identities=17% Similarity=0.193 Sum_probs=79.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|.|-++.+++..|++.|. +|+++||+.++.+++.+.....+ .........++.. ++.+|+||-++|.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~--~~~~~~~~~~~~~-~~~~dliINaTp~Gm~ 203 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELG--AAVEAAALADLEG-LEEADLLINATPVGMA 203 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcc--ccccccccccccc-ccccCEEEECCCCCCC
Confidence 569999999999999999999995 79999999999999887654321 0001112222111 1128999999998754
Q ss_pred HHH---HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 83 VDQ---TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 83 v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
-.. .+. ...+.++.++.|+--.+. .| .+.+..+++|...++.
T Consensus 204 ~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-plL~~A~~~G~~~idG 248 (283)
T COG0169 204 GPEGDSPVP--AELLPKGAIVYDVVYNPL-ET-PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCCCCCCc--HHhcCcCCEEEEeccCCC-CC-HHHHHHHHcCCeEECc
Confidence 321 122 345778899999876643 33 3556667778765543
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0055 Score=64.75 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=74.9
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
..+|+|||. |.+|..+.++|.+.|| +|+.+|+..+.+ . ++..+.+++++-.. +|+++++
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i---~---------G~~~~~sl~~lp~~---~Dlavi~ 71 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI---L---------GVKAYPSVLEIPDP---VDLAVIV 71 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc---C---------CccccCCHHHCCCC---CCEEEEe
Confidence 468999999 8899999999999999 566666553321 1 35678889988665 8999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCCh------HHHHHHHHHHHHcCCeEEec
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY------ENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------~~~~~~~~~l~~~g~~~i~~ 128 (484)
+|.. .+.++++++... .-+.+||-.+.... ...+++.+..++.|+.+++.
T Consensus 72 vp~~-~~~~~l~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 72 VPAK-YVPQVVEECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred cCHH-HHHHHHHHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 9986 777888777663 23345443332211 12244555666778777663
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0037 Score=61.43 Aligned_cols=74 Identities=18% Similarity=0.320 Sum_probs=59.7
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-|. +|.++|..|.+.|..|+++++.. .++++.+.+ +|+||.+++.+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvi~avG~p~~ 215 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------KNLRHHVRN---ADLLVVAVGKPGF 215 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------CCHHHHHhh---CCEEEEcCCCccc
Confidence 5899999988 99999999999999999998542 245566666 9999999976643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 216 v~~------~~vk~gavVIDvGin~ 234 (285)
T PRK10792 216 IPG------EWIKPGAIVIDVGINR 234 (285)
T ss_pred ccH------HHcCCCcEEEEccccc
Confidence 332 5688999999998654
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.012 Score=60.09 Aligned_cols=98 Identities=13% Similarity=0.216 Sum_probs=60.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc----CCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE----GNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~----~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++......... +...+....+.++ ++. ||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~d---aDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAG---SDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCC---CCEEEECC
Confidence 599999999999999999998876 7999999987654433221110 0002332345555 343 99999985
Q ss_pred CCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
-.+ .. ++++.+.+..+ .+..++|..||-
T Consensus 114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~-~p~~ivivvtNP 156 (350)
T PLN02602 114 GARQIPGESRLNLLQRNVALFRKIIPELAKY-SPDTILLIVSNP 156 (350)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCc
Confidence 332 11 22333444444 355677777753
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.021 Score=60.37 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=47.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.++|.|+|.|.+|..+|..|++.|++|+++|++. +..++..++.... +..+.......+.... +|+||.+.-
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~---~d~vv~~~g 77 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL-GIELVLGEYPEEFLEG---VDLVVVSPG 77 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc-CCEEEeCCcchhHhhc---CCEEEECCC
Confidence 4689999999999999999999999999999985 3333322221111 1112222333343344 899998764
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.004 Score=62.18 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=60.6
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCC-CCeeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGN-LPLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
|+||+|||. |.-|.-|.+.|+.+-+ ++..+..+..+-+.+.+...+..+ +..... .+++++ ...++|+||+|+|
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~--~~~~~DvvFlalP 79 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKI--ELDECDVVFLALP 79 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhh--hcccCCEEEEecC
Confidence 569999985 9999999999998854 777666554333333333221100 001111 123333 2234899999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++. -.+.+..+ +.+|..|||+|+..
T Consensus 80 hg~-s~~~v~~l---~~~g~~VIDLSadf 104 (349)
T COG0002 80 HGV-SAELVPEL---LEAGCKVIDLSADF 104 (349)
T ss_pred chh-HHHHHHHH---HhCCCeEEECCccc
Confidence 983 33343443 34577799999976
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.005 Score=55.98 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=52.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||+|||+ |..|+.++.-..+.||+|+.+-||++++..+....... .-.-++..+.+.|..-|+||.+....
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q-----~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQ-----KDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeec-----ccccChhhhHhhhcCCceEEEeccCC
Confidence 58999996 99999999999999999999999999986642110000 01224445455555689999998654
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0077 Score=59.65 Aligned_cols=120 Identities=16% Similarity=0.117 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|+|+|-.|++++..|++.|. +|+++||+.++.+++.+......+.......+..+....+..+|+||-++|-+..
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 468999999999999999999997 7999999999998887653211000001112222111112238999999987631
Q ss_pred HH-H-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VD-Q-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~-~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
-. . .+. ...+.++.++.|.--.+. .| .+.+..+++|...++
T Consensus 208 ~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~ 250 (283)
T PRK14027 208 AHPGTAFD--VSCLTKDHWVGDVVYMPI-ET-ELLKAARALGCETLD 250 (283)
T ss_pred CCCCCCCC--HHHcCCCcEEEEcccCCC-CC-HHHHHHHHCCCEEEc
Confidence 10 0 011 123567788999866543 33 345556667765543
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0045 Score=55.78 Aligned_cols=75 Identities=16% Similarity=0.401 Sum_probs=52.2
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.+++..|.++|..|++++... .++++.+++ +|+||.++..+..
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T---------------------~~l~~~~~~---ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT---------------------KNLQEITRR---ADIVVSAVGKPNL 92 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS---------------------SSHHHHHTT---SSEEEE-SSSTT-
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC---------------------Ccccceeee---ccEEeeeeccccc
Confidence 589999987 599999999999999999998653 244555665 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
++ ..++++|.+|||++....
T Consensus 93 i~------~~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 93 IK------ADWIKPGAVVIDVGINYV 112 (160)
T ss_dssp B-------GGGS-TTEEEEE--CEEE
T ss_pred cc------cccccCCcEEEecCCccc
Confidence 22 246889999999988764
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=59.09 Aligned_cols=124 Identities=13% Similarity=0.210 Sum_probs=70.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh---hcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK---QEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~---~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.++|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+.- ...+.+..-+....+.+..+ .+++-+.+++
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i-np~v~i~~~~ 102 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI-NSEVEIVPVV 102 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 89999988532222211100 00000000011111222222 2566666665
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
... ..+.++++ +..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~-~~~~~~~~---~~~~DlVid~~D~-~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 103 TDV-TVEELEEL---VKEVDLIIDATDN-FDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred ccC-CHHHHHHH---hcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 432 22233333 4456899999854 3444445566677788888776554
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.015 Score=54.68 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=52.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCC-HhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFHD-PESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s-~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|-|||.|.+|...+..|.+.|.+|++++++.. .+..+...+ .+..... ..+ ..+..+|+||.++.++
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~------~i~~~~~~~~~--~~l~~adlViaaT~d~- 81 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEG------KIRWKQKEFEP--SDIVDAFLVIAATNDP- 81 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCC------CEEEEecCCCh--hhcCCceEEEEcCCCH-
Confidence 5899999999999999999999999999987653 233433321 1222211 111 1233489999998776
Q ss_pred hHHHHHHHHh
Q 011501 82 PVDQTIKTLS 91 (484)
Q Consensus 82 ~v~~vl~~l~ 91 (484)
.+...+....
T Consensus 82 elN~~i~~~a 91 (202)
T PRK06718 82 RVNEQVKEDL 91 (202)
T ss_pred HHHHHHHHHH
Confidence 5565554433
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.077 Score=51.19 Aligned_cols=105 Identities=15% Similarity=0.109 Sum_probs=79.8
Q ss_pred CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe---cc
Q 011501 53 PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG---MG 129 (484)
Q Consensus 53 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~---~p 129 (484)
+++.++|..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|+++...-+..+.+.++.+...+ +.
T Consensus 128 GvkVtsDD~EAvk~---aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVAD---ADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcC---CCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56777787888887 9999999999987788899999999999999999999987777766666655444333 33
Q ss_pred CCCCHHhhhcCCccccCC--CHHHHHHHHHHHHHHhcc
Q 011501 130 VSGGEEGARYGPSLMPGG--SFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 130 v~gg~~~a~~g~~i~~gg--~~~~~~~v~~ll~~i~~~ 165 (484)
|-|.+ |..+..-| +++.++++.++.++.++.
T Consensus 205 VPgt~-----Gq~~i~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 205 VPEMK-----GQVYIAEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred CCCCC-----CceecccccCCHHHHHHHHHHHHHhCCC
Confidence 33333 44333333 788899999998888865
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.008 Score=64.06 Aligned_cols=43 Identities=9% Similarity=0.151 Sum_probs=38.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...+..+...|.+|+++|+++++.+...+.+
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG 208 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG 208 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 5899999999999999999999999999999999988776654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.026 Score=53.06 Aligned_cols=123 Identities=14% Similarity=0.227 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+..+.. .....+-.-+....+.+.++ .+++-+.+.+..-
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 100 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLREL-NSDIQVTALKERV 100 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHh-CCCCEEEEehhcC
Confidence 589999999999999999999997 89999988533333332210 00000000011112222221 2555555554431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+ .+...+..-++||+++.. +..-..+.+.+.+.++.|+.+.+.|
T Consensus 101 ~-~~---~~~~~~~~~D~Vi~~~d~-~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 101 T-AE---NLELLINNVDLVLDCTDN-FATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred C-HH---HHHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 11 122334456899998755 3444456667777888888876554
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.016 Score=61.48 Aligned_cols=33 Identities=12% Similarity=0.383 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++|+|+|+|.-|.++|..|.+.|++|+++|+++
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 589999999999999999999999999999875
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=59.12 Aligned_cols=128 Identities=19% Similarity=0.245 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhH-------HHHHHHHhhhcCCCCeeecC--CHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--------GFP-ISVYNRTTSK-------VDETVERAKQEGNLPLYGFH--DPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~-------~~~~~~~~~~~~~~~~~~~~--s~~e~~~ 65 (484)
|+|+|||+|.+|+.+++.|.+. +++ |.++|++... .+++.+...+ +.+...... +++++..
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhc
Confidence 4899999999999999999873 344 4456766432 2222221110 000001112 5566654
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHH-HHHHHHHHHHcCCeE-EeccCCCCH
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYEN-TERRQKAVAELGLLY-LGMGVSGGE 134 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~g~~~-i~~pv~gg~ 134 (484)
..+|++|-|+|....-......+.+.+..|.-||-.+...... -.++.+..++.|.++ +++.|.||-
T Consensus 80 --~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~ 148 (326)
T PRK06392 80 --IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGV 148 (326)
T ss_pred --CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeecc
Confidence 2489999999754221223444556677888888776543221 123334444556654 455566554
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.084 Score=51.06 Aligned_cols=108 Identities=16% Similarity=0.119 Sum_probs=79.8
Q ss_pred CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 53 PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 53 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+++.++|..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|.++...-++.+.+.++.+...+... +
T Consensus 126 GvkVtsDD~EAv~~---aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HP-a 201 (340)
T TIGR01723 126 GLKVTTDDREAVED---ADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHP-G 201 (340)
T ss_pred CceEecCcHHHhcC---CCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCC-C
Confidence 56777788888887 9999999999977788899999999999999999999987776666666555554443321 2
Q ss_pred CHHhhhcCCccccCC--CHHHHHHHHHHHHHHhcc
Q 011501 133 GEEGARYGPSLMPGG--SFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 133 g~~~a~~g~~i~~gg--~~~~~~~v~~ll~~i~~~ 165 (484)
+.++.. |...+.-| +++.++++.++.++.++.
T Consensus 202 aVPgt~-~q~Yi~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 202 CVPEMK-GQVYIAEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred CCCCCC-CceEeecccCCHHHHHHHHHHHHHhCCC
Confidence 222333 34222333 788899999998888865
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.016 Score=58.01 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=46.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCC----CCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGN----LPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~----~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
||+|||+|.+|.++|..|+..+. ++.++|+++++++........... .+++. ..+.+++ +. +|+||++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~-~~---aDivvita 76 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDC-AD---ADIIVITA 76 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHh-CC---CCEEEECC
Confidence 69999999999999999998886 799999988765433222111000 01222 2344433 33 99999987
Q ss_pred CC
Q 011501 78 KA 79 (484)
Q Consensus 78 p~ 79 (484)
-.
T Consensus 77 G~ 78 (307)
T cd05290 77 GP 78 (307)
T ss_pred CC
Confidence 43
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=53.94 Aligned_cols=70 Identities=20% Similarity=0.376 Sum_probs=52.4
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 6 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|.|+|. |.+|..+++.|.+.|++|++..|++++.+. ..+.. -+.. ..+++.+.+.++.+|.||.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~----~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVE----IIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEE----EEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccc----cceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 678995 999999999999999999999999998776 11110 0111 2455566666677999999997653
|
... |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.018 Score=55.39 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=72.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCe-eecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPL-YGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+..+... ....+. .......+-+..+ .+++.+.+.+..
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~-np~v~v~~~~~~ 106 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERF-NSDIKIETFVGR 106 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHh-CCCCEEEEEecc
Confidence 589999999999999999999997 788999876555444432100 000000 0000011111221 277777775543
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..++-+++ .+++-++|||+.-. +..-..+.+.+.+.++.++.+.+.|
T Consensus 107 -~~~~~~~~---~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g 153 (231)
T PRK08328 107 -LSEENIDE---VLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEG 153 (231)
T ss_pred -CCHHHHHH---HHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeecc
Confidence 12222233 34456899999766 3443445556677899888877654
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0099 Score=54.47 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=64.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
||.|||+|.+|+.++.+|++.|. +++++|.+.-....+..+.......+-.-.....+.++.+ .+++=+.+.+..-.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~l-np~v~i~~~~~~~~- 78 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREI-NPFVKIEAINIKID- 78 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHH-CCCCEEEEEEeecC-
Confidence 58999999999999999999998 5999998862222222110000000000011111112221 14444544433211
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc-CCeEEeccCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL-GLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~pv~ 131 (484)
.+ .+...+..-++||+++. .+..-..+.+.+.++ ++.|+.+...
T Consensus 79 ~~---~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 79 EN---NLEGLFGDCDIVVEAFD-NAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred hh---hHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 11 12233445689999944 444434455666555 8888776544
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.019 Score=57.00 Aligned_cols=120 Identities=13% Similarity=0.164 Sum_probs=73.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh---hHHHHHHHHhhhcCCCCeeecCCHhH---HHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT---SKVDETVERAKQEGNLPLYGFHDPES---FVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~---~~~~~~~~~~~~~~~~~~~~~~s~~e---~~~~l~~advIi~~ 76 (484)
+++.|+|+|-.+.+++..|+..|. +|+++||++ ++.+.+.+......+..+.. .+.++ +.+.+.++|+||-+
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINa 203 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNG 203 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEEC
Confidence 478999999999999999999886 799999995 47777665432110000111 22221 22233458999999
Q ss_pred cCCCchH--HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 77 VKAGSPV--DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 77 vp~~~~v--~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+|.+..- +. .... ...++++.++.|.--.+ ..| .+.+..+++|...++
T Consensus 204 Tp~Gm~~~~~~~~~~~-~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 204 TKVGMKPLENESLVND-ISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCCCCCCCCCCCCCc-HHHCCCCCEEEEecCCC-ccC-HHHHHHHHCCCeEEC
Confidence 9876321 11 1000 12356788999987544 333 455666777776554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0065 Score=60.06 Aligned_cols=74 Identities=14% Similarity=0.304 Sum_probs=56.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. .|.+++..|.+.|.+|+++++... ++.+.+.+ +|+||.+++.+..
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t~---------------------~L~~~~~~---aDIvI~AtG~~~~ 215 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRTQ---------------------NLPELVKQ---ADIIVGAVGKPEL 215 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCch---------------------hHHHHhcc---CCEEEEccCCCCc
Confidence 5799999997 999999999999999999997321 22233344 9999999975542
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. .+.+++|.+|+|.+...
T Consensus 216 v~------~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 216 IK------KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred CC------HHHcCCCCEEEEEEEee
Confidence 22 13578999999988653
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.012 Score=61.58 Aligned_cols=125 Identities=16% Similarity=0.096 Sum_probs=76.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-hhcCCCCeeec--CCHhHHHhhcCCCcEEEEec--
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-KQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v-- 77 (484)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++.. ....... ... ++... ....+.... +|+|+.+=
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~---~i~~~~g~~~~~~~~~---~d~vV~SPGi 79 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLE---GIEVELGSHDDEDLAE---FDLVVKSPGI 79 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhcc---CceeecCccchhcccc---CCEEEECCCC
Confidence 478999999999999999999999999999977665 1111110 000 11111 111123333 89998852
Q ss_pred CCCch-HHHHHH---------HHhhhc--CCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 KAGSP-VDQTIK---------TLSVYM--EKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 p~~~~-v~~vl~---------~l~~~l--~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.... ++.... ++.-.. ...-+-|..||++-.+|..+...+++.|....-++-.|.+
T Consensus 80 ~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p 148 (448)
T COG0771 80 PPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTP 148 (448)
T ss_pred CCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCcc
Confidence 33222 222221 222222 2335566778888777777788888888877666666654
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0063 Score=56.23 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=61.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec--CC----HhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF--HD----PESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~--~s----~~e~~~~l~~advIi~~ 76 (484)
++|.|||-+. +|.+||..|.++|..|+++|.+.-.. +...... +-..+ .+ +.+.+++ ||+||.+
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~----~hs~t~~~~~~~~l~~~~~~---ADIVIsA 133 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESI----RHEKHHVTDEEAMTLDCLSQ---SDVVITG 133 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--ccccccc----ccccccccchhhHHHHHhhh---CCEEEEc
Confidence 5799999755 79999999999999999998654321 1110000 00111 12 4566665 9999999
Q ss_pred cCCCch-HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGSP-VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.+.. +. ..++++|.+|||.+...
T Consensus 134 vG~~~~~i~------~d~ik~GavVIDVGi~~ 159 (197)
T cd01079 134 VPSPNYKVP------TELLKDGAICINFASIK 159 (197)
T ss_pred cCCCCCccC------HHHcCCCcEEEEcCCCc
Confidence 998854 23 24578999999999764
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.012 Score=58.97 Aligned_cols=95 Identities=12% Similarity=0.160 Sum_probs=58.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHHhhhcCCCCeeec-C--CHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDE----TVERAKQEGNLPLYGF-H--DPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----~~~~~~~~~~~~~~~~-~--s~~e~~~~l~~advI 73 (484)
|||+|||+ |.+|.++|..|+..|. ++.++|++ +++. +..... ...+..+ . ++.+.++ .+|+|
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~---~~~i~~~~~~~~~y~~~~---daDiv 72 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT---PAKVTGYLGPEELKKALK---GADVV 72 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC---cceEEEecCCCchHHhcC---CCCEE
Confidence 58999999 9999999999998884 79999998 2211 111100 0123332 2 2223333 39999
Q ss_pred EEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|++.-.+. . ++++.+.+.++ .+..+||..||-.
T Consensus 73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~-~p~a~vivvtNPv 120 (310)
T cd01337 73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKA-CPKALILIISNPV 120 (310)
T ss_pred EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 99874421 1 22333455555 4667888887743
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.008 Score=59.13 Aligned_cols=74 Identities=19% Similarity=0.335 Sum_probs=58.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-| .+|.++|..|.++|..|++++.... ++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~---------------------~l~~~~~~---ADIvV~AvG~p~~ 213 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK---------------------DLSFYTQN---ADIVCVGVGKPDL 213 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH---------------------HHHHHHHh---CCEEEEecCCCCc
Confidence 589999999 8999999999999999999864321 23455566 9999999988753
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 214 IK------ASMVKKGAVVVDIGINR 232 (285)
T ss_pred CC------HHHcCCCcEEEEeeccc
Confidence 22 23578999999998754
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0032 Score=55.07 Aligned_cols=123 Identities=18% Similarity=0.263 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. .....+..-.....+.+.++ .+++=+.+.+..-
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 81 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEI-NPDVEVEAIPEKI 81 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHH-STTSEEEEEESHC
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHh-cCceeeeeeeccc
Confidence 589999999999999999999998 79999977533222221100 00000001111222222222 1444455555442
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
....+..+. ..-++||+++.. +.....+.+.+.+.++.|+.+.+.|
T Consensus 82 -~~~~~~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 82 -DEENIEELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -SHHHHHHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -ccccccccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 123333433 345899998766 4555567778888899999887664
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.044 Score=58.44 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=45.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecC--CHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFH--DPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~--s~~e~~~~l~~advIi~~ 76 (484)
.++|.|+|+|..|.++|..|.+.|++|+++|++.....++.... ++.... ...+.+.. +|+||.+
T Consensus 15 ~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~------gi~~~~~~~~~~~~~~---~d~vV~S 81 (473)
T PRK00141 15 SGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVT------GVADISTAEASDQLDS---FSLVVTS 81 (473)
T ss_pred CCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhc------CcEEEeCCCchhHhcC---CCEEEeC
Confidence 36799999999999999999999999999998876544432221 133321 22333344 8888875
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0062 Score=62.84 Aligned_cols=98 Identities=15% Similarity=0.153 Sum_probs=60.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||+|+|. |..|..|.+.|.++ .++|..+.++...-+.+......-.+.......+.+.. .++.+|+||+++|++
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~--~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDA--DFSDVDAVFCCLPHG 115 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHH--HhcCCCEEEEcCCHH
Confidence 468999996 99999999999998 67888887664433222221100000001111112211 123499999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+++.. +..|..|||.|+..
T Consensus 116 -~s~~i~~~----~~~g~~VIDlSs~f 137 (381)
T PLN02968 116 -TTQEIIKA----LPKDLKIVDLSADF 137 (381)
T ss_pred -HHHHHHHH----HhCCCEEEEcCchh
Confidence 44444444 44688999999875
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.015 Score=58.44 Aligned_cols=92 Identities=11% Similarity=0.160 Sum_probs=55.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcC-CCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQ-KPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~-~advIi~~vp~~~~ 82 (484)
.+|+|+|+|-+|..-.+.....|.+|+++|+++++.+.+.+.++.. ....+.++..+.++ .+|+||.+++ +..
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~-----~i~~~~~~~~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADH-----VINSSDSDALEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcE-----EEEcCCchhhHHhHhhCcEEEECCC-hhh
Confidence 4799999997665555555558999999999999988887766531 22211122222111 2788888887 544
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
+...+ ..++++-.++-.+.
T Consensus 242 ~~~~l----~~l~~~G~~v~vG~ 260 (339)
T COG1064 242 LEPSL----KALRRGGTLVLVGL 260 (339)
T ss_pred HHHHH----HHHhcCCEEEEECC
Confidence 44433 33444444444443
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.011 Score=59.88 Aligned_cols=111 Identities=17% Similarity=0.241 Sum_probs=72.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.++|.|+|+ |.||+.+++.|+++ | .++++++|++++...+..+... .. ..++++.... +|+|+.+...
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~-----~~-i~~l~~~l~~---aDiVv~~ts~ 225 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG-----GK-ILSLEEALPE---ADIVVWVASM 225 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc-----cc-HHhHHHHHcc---CCEEEECCcC
Confidence 368999998 89999999999864 5 5899999999888877654321 01 1245555554 9999998865
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+..+ +++. ..+.++.++||.+- |.+... .+...|+.+++.++.
T Consensus 226 ~~~~--~I~~--~~l~~~~~viDiAv--PRDVd~---~v~~~~V~v~~gG~V 268 (340)
T PRK14982 226 PKGV--EIDP--ETLKKPCLMIDGGY--PKNLDT---KVQGPGIHVLKGGIV 268 (340)
T ss_pred CcCC--cCCH--HHhCCCeEEEEecC--CCCCCc---ccCCCCEEEEeCCcc
Confidence 4321 0111 23468899999874 333322 122367888776644
|
|
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0027 Score=52.17 Aligned_cols=79 Identities=18% Similarity=0.294 Sum_probs=58.3
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++.|+|+|..|..++.++. ..|+. +.++|.++++..+-.. ++....+.+++.+.. +.|+.+++||..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~--------gipV~~~~~~l~~~~-~i~iaii~VP~~- 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIG--------GIPVYGSMDELEEFI-EIDIAIITVPAE- 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEET--------TEEEESSHHHHHHHC-TTSEEEEES-HH-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEEC--------CEEeeccHHHhhhhh-CCCEEEEEcCHH-
Confidence 47999999999999986544 45776 5678999886432111 366777999988877 499999999986
Q ss_pred hHHHHHHHHhh
Q 011501 82 PVDQTIKTLSV 92 (484)
Q Consensus 82 ~v~~vl~~l~~ 92 (484)
.+.+++.++..
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66777766665
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.021 Score=57.58 Aligned_cols=100 Identities=14% Similarity=0.171 Sum_probs=59.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKQEG--N-LPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|||+ |.+|.++|..|...|. ++.++|+++ ++++.......... . .+.....+..+.++.
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--- 79 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKD--- 79 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCC---
Confidence 468999998 9999999999998875 799999965 32322221111000 0 012222333333444
Q ss_pred CcEEEEecCCC----c-----------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAG----S-----------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ . .++++.+.+..+-++..++|..||
T Consensus 80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99999986432 1 133444566666554667777664
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.013 Score=59.15 Aligned_cols=100 Identities=12% Similarity=0.140 Sum_probs=58.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKQEG--N-LPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|||+ |.+|.++|..|+..|. ++.++|++++. ++.......... . .++....+..+.++.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d--- 78 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKD--- 78 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCC---
Confidence 468999999 9999999999998776 79999995432 222111110000 0 012233333333344
Q ss_pred CcEEEEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+. . ++++...+..+-++..++|..||
T Consensus 79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 999999864321 1 33334555555544666777764
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.038 Score=52.01 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=47.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|.|||.|.+|..-++.|.+.|.+|++++.+.. .+..+.+.+ ++... ....+ +. .+++||.++.+
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~------~i~~~~~~~~~~d-l~---~~~lVi~at~d 79 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQG------GITWLARCFDADI-LE---GAFLVIAATDD 79 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcC------CEEEEeCCCCHHH-hC---CcEEEEECCCC
Confidence 5899999999999999999999999999987754 334444332 23322 12223 33 38999988766
Q ss_pred C
Q 011501 80 G 80 (484)
Q Consensus 80 ~ 80 (484)
.
T Consensus 80 ~ 80 (205)
T TIGR01470 80 E 80 (205)
T ss_pred H
Confidence 5
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.013 Score=55.44 Aligned_cols=120 Identities=15% Similarity=0.207 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.......+-.-.....+-++.+ .+++-+...+.. .
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~l-np~v~v~~~~~~-i 106 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEI-NPFVEIEAHNEK-I 106 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHH-CCCCEEEEEeee-c
Confidence 589999999999999999999998 5999998842222222110000000000011111112211 145555555432 1
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc-CCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL-GLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~~p 129 (484)
....+.+ .+..-++|||++-. +.....+.+.+.+. ++.++.+.
T Consensus 107 ~~~~~~~---~~~~~DvVI~a~D~-~~~r~~l~~~~~~~~~~p~I~~~ 150 (212)
T PRK08644 107 DEDNIEE---LFKDCDIVVEAFDN-AETKAMLVETVLEHPGKKLVAAS 150 (212)
T ss_pred CHHHHHH---HHcCCCEEEECCCC-HHHHHHHHHHHHHhCCCCEEEee
Confidence 1122222 24455899999543 34444556666666 77777664
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.014 Score=57.48 Aligned_cols=73 Identities=15% Similarity=0.272 Sum_probs=58.1
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+. +|.++|..|.+.|..|++++... .++.+...+ +|+||.++.-+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T---------------------~~l~~~~~~---ADIvv~AvG~p~~ 220 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT---------------------DDLKKYTLD---ADILVVATGVKHL 220 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC---------------------CCHHHHHhh---CCEEEEccCCccc
Confidence 5799999988 99999999999999999998431 245556666 9999999877643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. ..++++|.+|||.+..
T Consensus 221 i~------~~~vk~gavVIDvGin 238 (287)
T PRK14176 221 IK------ADMVKEGAVIFDVGIT 238 (287)
T ss_pred cC------HHHcCCCcEEEEeccc
Confidence 32 2368899999999875
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.026 Score=57.08 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=58.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HHH----HHHHHhhhcCCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVD----ETVERAKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~----~~~~~~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
+.||+|||+ |.+|.++|..|+..|. ++.++|++++ +++ ++....... ..++....+..+.++.
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~-~~~~~i~~~~y~~~~d-- 80 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPL-LAGVVITDDPNVAFKD-- 80 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhh-cCCcEEecChHHHhCC--
Confidence 569999998 9999999999987664 7999999543 222 122111000 0012333333333444
Q ss_pred CCcEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 69 KPRVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 69 ~advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ .. ++++.+.+..+.++..++|..||
T Consensus 81 -aDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 81 -ADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred -CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 99999976431 11 33333555555545667777774
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.028 Score=50.54 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=50.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|||.|.+|...++.|.+.|++|+++++. ..+++.+.. .+... ..+++ ..+..+|+||.++.++ .
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~------~i~~~~~~~~~--~dl~~a~lViaaT~d~-e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELP------YITWKQKTFSN--DDIKDAHLIYAATNQH-A 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhcc------CcEEEecccCh--hcCCCceEEEECCCCH-H
Confidence 58999999999999999999999999999643 334444321 12221 11111 1234489999988665 5
Q ss_pred HHHHHHHHh
Q 011501 83 VDQTIKTLS 91 (484)
Q Consensus 83 v~~vl~~l~ 91 (484)
+...+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 665554443
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=58.93 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=58.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHHhhhcCCCCeeecC---CHhHHHhhcCCCcEEEEe
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKQEGNLPLYGFH---DPESFVHSIQKPRVIIML 76 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~~---s~~e~~~~l~~advIi~~ 76 (484)
||+|||+ |.+|.++|..|+..++ ++.++|+++... -++.. ... ..++..+. ++.+.++. +|+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~-~~~--~~~i~~~~~~~~~~~~~~d---aDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSH-IPT--AASVKGFSGEEGLENALKG---ADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhc-CCc--CceEEEecCCCchHHHcCC---CCEEEEe
Confidence 6999999 9999999999998876 799999987211 11111 100 01233311 12333444 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+. .++++.+.+..+ .+..+||..||-.
T Consensus 75 aG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~-~p~~iiivvsNPv 119 (312)
T TIGR01772 75 AGVPRKPGMTRDDLFNVNAGIVKDLVAAVAES-CPKAMILVITNPV 119 (312)
T ss_pred CCCCCCCCccHHHHHHHhHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 75431 122333455555 4677777777743
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=57.65 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=58.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++.+.+++ +|+||.++..+.-
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T---------------------~~l~~~~~~---ADIvV~AvGkp~~ 213 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT---------------------KDLKAHTKK---ADIVIVGVGKPNL 213 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCcccc
Confidence 589999988 799999999999999999886431 244556666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~gavvIDvGin~ 232 (281)
T PRK14183 214 IT------EDMVKEGAIVIDIGINR 232 (281)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24688999999998764
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.024 Score=63.14 Aligned_cols=98 Identities=10% Similarity=0.183 Sum_probs=72.8
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhh--------hcCC-c
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGA--------RYGP-S 142 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a--------~~g~-~ 142 (484)
||+|+|.. .+.++++++.++++++.+|.|.++++..-.....+.+......|++. |+.|.+..- ..|. .
T Consensus 1 vila~Pv~-~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~~ 79 (673)
T PRK11861 1 VLLAAPVA-QTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRNV 79 (673)
T ss_pred CEEEcCHH-HHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCeE
Confidence 68999987 78999999999999999999999998655555444443323568886 888876432 2444 3
Q ss_pred ccc---CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 143 LMP---GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 143 i~~---gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
++. ..++++++.++.+++.+|+++ +.+.+
T Consensus 80 il~p~~~~~~~~~~~~~~l~~~~Ga~~-------~~~~~ 111 (673)
T PRK11861 80 VLCALPENAPDALARVEAMWRAARADV-------RAMSA 111 (673)
T ss_pred EEecCCCCCHHHHHHHHHHHHHcCCEE-------EECCH
Confidence 333 236888999999999999874 66655
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.019 Score=50.57 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=48.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|+|- ...|.+++..|.+.|..|++++++. .++++.+++ +|+|+.+++....
T Consensus 29 k~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t---------------------~~l~~~v~~---ADIVvsAtg~~~~ 84 (140)
T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT---------------------IQLQSKVHD---ADVVVVGSPKPEK 84 (140)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC---------------------cCHHHHHhh---CCEEEEecCCCCc
Confidence 35566654 3356666666666666666655431 156666776 9999999987733
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++ ..++++|.+|+|.+...
T Consensus 85 i~------~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 85 VP------TEWIKPGATVINCSPTK 103 (140)
T ss_pred cC------HHHcCCCCEEEEcCCCc
Confidence 22 24688999999988765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.034 Score=55.18 Aligned_cols=116 Identities=11% Similarity=-0.014 Sum_probs=77.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..||.|.|. |.+|..+..+|.+.||+ .+|=.||.. .++.. ++..+.+++|+.+.. .+|+.+++||..
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v~---------G~~~y~sv~dlp~~~-~~DlAvi~vp~~ 76 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFNTVAEAVEAT-GANASVIYVPPP 76 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeEe---------CeeccCCHHHHhhcc-CCCEEEEEcCHH
Confidence 358999997 88999999999999997 554444331 11111 367788999887631 279999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
.+.++++++... .-+..||-.+.....+.+++.+...+.|+++++.--.
T Consensus 77 -~v~~~l~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~ 125 (291)
T PRK05678 77 -FAADAILEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCP 125 (291)
T ss_pred -HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCC
Confidence 677777776652 2234455555444343456777778889988875433
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.026 Score=57.39 Aligned_cols=124 Identities=13% Similarity=0.190 Sum_probs=71.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhc-CCC--CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQE-GNL--PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~-~~~--~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+..-. ... +..-+....+.+..+ .+++-+....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i-np~v~v~~~~ 102 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI-NSDVRVEAIV 102 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH-CCCcEEEEEe
Confidence 3589999999999999999999998 8999998754443333211000 000 000011112222222 2556555554
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..-. ...+. +.+..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 103 ~~~~-~~~~~---~~~~~~DlVid~~Dn-~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 103 QDVT-AEELE---ELVTGVDLIIDATDN-FETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ccCC-HHHHH---HHHcCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeeee
Confidence 3311 22222 334556899999765 4444456666777788888766554
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.059 Score=57.71 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=70.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec--CC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v--p~ 79 (484)
.+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.+ +... ....+.+.. +|+||.+- |.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g-------~~~~~~~~~~~~l~~---~D~VV~SpGi~~ 82 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERG-------VATVSTSDAVQQIAD---YALVVTSPGFRP 82 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCC-------CEEEcCcchHhHhhc---CCEEEECCCCCC
Confidence 5899999999999999999999999999998876655443322 2222 222333444 89888865 33
Q ss_pred CchHHHHHH----------HHhhhc-------CC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 80 GSPVDQTIK----------TLSVYM-------EK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 80 ~~~v~~vl~----------~l~~~l-------~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
....-.... ++.-.+ .+ .-+-|-.|+++-.++.-+...+...|....-.+-.|.+
T Consensus 83 ~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p 155 (488)
T PRK03369 83 TAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP 155 (488)
T ss_pred CCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence 222111111 121111 12 23445566666555555667777766543333334443
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.02 Score=57.62 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=45.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHH--HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVD--ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~--~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.||+|||+ |.+|..+|..|+..+ .++.++|++....+ ++...... ..+...+++.+..+.++.+|+||++.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~---~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTP---AKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcC---ceEEEecCCCchHHHhCCCCEEEECC
Confidence 569999999 999999999999655 58999999432211 22211110 12333333222122333499999987
Q ss_pred CC
Q 011501 78 KA 79 (484)
Q Consensus 78 p~ 79 (484)
-.
T Consensus 85 G~ 86 (321)
T PTZ00325 85 GV 86 (321)
T ss_pred CC
Confidence 54
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.018 Score=53.87 Aligned_cols=125 Identities=17% Similarity=0.309 Sum_probs=71.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hc--CCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QE--GNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~--~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+.- .. ...+..-+....+.++.+ .+++-+...+
T Consensus 19 ~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~l-Np~v~i~~~~ 97 (198)
T cd01485 19 SAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQEL-NPNVKLSIVE 97 (198)
T ss_pred hCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHH-CCCCEEEEEe
Confidence 3689999999999999999999997 59999877433222221100 00 000000011112222222 2667666664
Q ss_pred CCch-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 79 AGSP-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 79 ~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.... ..+-.. ..+.+=++||++... +.....+.+.+.++++.|+.+.+.|
T Consensus 98 ~~~~~~~~~~~---~~~~~~dvVi~~~d~-~~~~~~ln~~c~~~~ip~i~~~~~G 148 (198)
T cd01485 98 EDSLSNDSNIE---EYLQKFTLVIATEEN-YERTAKVNDVCRKHHIPFISCATYG 148 (198)
T ss_pred cccccchhhHH---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 4311 011122 233455889988544 5555667778888899888876544
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.035 Score=47.11 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=60.4
Q ss_pred cccHHHHHHHHHHHhC----CCcE-EEEeCChhHHH-HHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 10 GLAVMGQNLALNIAEK----GFPI-SVYNRTTSKVD-ETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 10 GlG~mG~~lA~~L~~~----G~~V-~v~dr~~~~~~-~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|.||+.++..|.+. +++| .++||+ .... ....... +...+.+++++++.. .+|+||-|.+. +.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~dvvVE~t~~-~~~ 72 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFP-----DEAFTTDLEELIDDP-DIDVVVECTSS-EAV 72 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHT-----HSCEESSHHHHHTHT-T-SEEEE-SSC-HHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcc-----cccccCCHHHHhcCc-CCCEEEECCCc-hHH
Confidence 8999999999999987 4554 467888 1110 0111111 135678999998833 39999999544 344
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH---HHHHHHHHHHHcCCeE
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE---NTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~---~~~~~~~~l~~~g~~~ 125 (484)
.+. +.+.+..|.-||-.|..... .-.++.+..++.|.+|
T Consensus 73 ~~~---~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 73 AEY---YEKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHH---HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHH---HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 443 44556688888887766444 2233444445556654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.26 Score=50.32 Aligned_cols=157 Identities=15% Similarity=0.181 Sum_probs=93.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCC---------------Ce---eecCCHhHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNL---------------PL---YGFHDPESFV 64 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~---------------~~---~~~~s~~e~~ 64 (484)
.+|-|+|+|..+..+|..+.+.+. .|-+++|...+-+.+.+.....++. .+ ....+.+++.
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~ 81 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIE 81 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhc
Confidence 579999999999999999998875 6999999888877776554331110 00 1233455555
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcC--CeEEec-------cCCCCH
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELG--LLYLGM-------GVSGGE 134 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g--~~~i~~-------pv~gg~ 134 (484)
.. =|.+|+|||.+ +-.+|+++|-.. |..=+.||-.|... +...-+...+.+.| +.+|.- -.+.++
T Consensus 82 g~---WdtlILavtaD-AY~~VL~ql~~~~L~~vk~iVLvSPtf-GS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~ 156 (429)
T PF10100_consen 82 GE---WDTLILAVTAD-AYLDVLQQLPWEVLKRVKSIVLVSPTF-GSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGE 156 (429)
T ss_pred cc---ccEEEEEechH-HHHHHHHhcCHHHHhhCCEEEEECccc-chHHHHHHHHHhcCCCceEEEeecccccceeccCC
Confidence 54 79999999998 677888776642 33334555555543 23323334444433 333321 233332
Q ss_pred Hhh---hcCC--ccccC---CCHHHHHHHHHHHHHHhcc
Q 011501 135 EGA---RYGP--SLMPG---GSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 135 ~~a---~~g~--~i~~g---g~~~~~~~v~~ll~~i~~~ 165 (484)
... ..|. .+.+| ++....+++..+|+.++-+
T Consensus 157 ~~~~vlt~~vK~kiYigSt~~~s~~~~~l~~~~~~~gI~ 195 (429)
T PF10100_consen 157 QPNRVLTTAVKKKIYIGSTHSNSPELDKLCRLLAQLGIQ 195 (429)
T ss_pred CcceehhhhhhceEEEEeCCCCChHHHHHHHHHHHcCCe
Confidence 111 1111 34444 2445677888888887654
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.016 Score=56.94 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=58.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~---------------------T~~l~~~~~~---ADIvI~AvG~~~~ 213 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR---------------------TKDLPQVAKE---ADILVVATGLAKF 213 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEecCCcCc
Confidence 579999975 58999999999999999998643 1245666676 9999999988753
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 214 VK------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 33 24688999999999775
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.017 Score=48.25 Aligned_cols=87 Identities=17% Similarity=0.194 Sum_probs=60.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhh
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVY 93 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~ 93 (484)
-+..++..|.+.|.+|.+||+.-............ ++..++++++.++. +|.||++++.+..-.--.+.+...
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~----~~~~~~~~~~~~~~---~D~vvl~t~h~~f~~l~~~~~~~~ 90 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLE----GVEVCDDLEEALKG---ADAVVLATDHDEFRELDWEEIAKL 90 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHH----CEEEESSHHHHHTT---ESEEEESS--GGGGCCGHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCcc----ceEEecCHHHHhcC---CCEEEEEecCHHHhccCHHHHHHh
Confidence 46678999999999999999886654332211001 36778899988887 999999998874333234667777
Q ss_pred cCCCCEEEecCCCC
Q 011501 94 MEKGDCIIDGGNEW 107 (484)
Q Consensus 94 l~~g~iiId~st~~ 107 (484)
+.++.+|+|+-+..
T Consensus 91 ~~~~~~iiD~~~~~ 104 (106)
T PF03720_consen 91 MRKPPVIIDGRNIL 104 (106)
T ss_dssp SCSSEEEEESSSTS
T ss_pred cCCCCEEEECcccc
Confidence 77889999987753
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.038 Score=54.64 Aligned_cols=113 Identities=14% Similarity=0.027 Sum_probs=78.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|.| .|.+|..+-.+|...|++ .++..+|.+ .++.. ++..+.+++|+.+.. .+|+.++++|..
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v~---------G~~~y~sv~dlp~~~-~~Dlavi~vpa~- 74 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTVL---------GLPVFDSVKEAVEET-GANASVIFVPAP- 74 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcceec---------CeeccCCHHHHhhcc-CCCEEEEecCHH-
Confidence 5799999 499999999999999998 777777652 11111 467888999988742 269999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.+.++++++...- -+..||-.+.......+++.+..++.|+.+++.-
T Consensus 75 ~v~~~l~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGPN 121 (286)
T TIGR01019 75 FAADAIFEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGPN 121 (286)
T ss_pred HHHHHHHHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCC
Confidence 6777777766522 2344454444433334566677778899888643
|
ATP citrate lyases appear to form an outgroup. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.017 Score=59.12 Aligned_cols=99 Identities=12% Similarity=0.301 Sum_probs=60.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHH-hhh--cC---C--CCeee-cCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER-AKQ--EG---N--LPLYG-FHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~-~~~--~~---~--~~~~~-~~s~~e~~~~l~~ 69 (484)
|+++||+|+| .|.+|..+.+.|.++.. ++..+.++++...+-... ... .+ + ..+.. ..+++++ ..
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~--- 76 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DD--- 76 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cC---
Confidence 7778999998 89999999999998755 777775555432211110 000 00 0 01111 1234443 43
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+|+.|+|.+ ....+.+.+. ..|..+||.|...
T Consensus 77 ~DvVf~a~p~~-~s~~~~~~~~---~~G~~vIDls~~f 110 (349)
T PRK08664 77 VDIVFSALPSD-VAGEVEEEFA---KAGKPVFSNASAH 110 (349)
T ss_pred CCEEEEeCChh-HHHHHHHHHH---HCCCEEEECCchh
Confidence 99999999987 3344444332 3678899998754
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.022 Score=57.38 Aligned_cols=73 Identities=12% Similarity=0.268 Sum_probs=45.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHH--HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKV--DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.||+|||+ |.+|..+|..|+..+. ++.++|+++... -++..... ...+..+.+..+..+.++.+|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~---~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINT---PAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCc---CceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999997665 899999987211 12221111 0123322223222333444999999874
Q ss_pred C
Q 011501 79 A 79 (484)
Q Consensus 79 ~ 79 (484)
.
T Consensus 96 ~ 96 (323)
T PLN00106 96 V 96 (323)
T ss_pred C
Confidence 3
|
|
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.038 Score=57.90 Aligned_cols=117 Identities=14% Similarity=0.083 Sum_probs=76.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEE-e----------CChhHHHHHHHHhhhc-CCC----CeeecCCHhHHHhhc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVY-N----------RTTSKVDETVERAKQE-GNL----PLYGFHDPESFVHSI 67 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~-d----------r~~~~~~~~~~~~~~~-~~~----~~~~~~s~~e~~~~l 67 (484)
++|+|.|.|++|..+|+.|.+.|.+|.++ | .+.+.+.+..+..... .++ +... .+.+++...
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~- 310 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSV- 310 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCcccccc-
Confidence 68999999999999999999999998876 7 5655554443321000 000 0111 133343331
Q ss_pred CCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 68 QKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.||+++-|-..+.-..+....+.. ++=++|+...|... +.+..+.|.++|+.++.
T Consensus 311 -d~DVliPaAl~n~It~~~a~~i~~--~~akiIvEgAN~p~--t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 311 -PCDIALPCATQNELDEEDAKTLIA--NGVKAVAEGANMPS--TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred -CCcEEEecCCcCcCCHHHHHHHHH--cCCeEEEcCCCCCC--CHHHHHHHHHCCcEEEC
Confidence 489999998877555555555542 13367888888763 66677888999998875
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.048 Score=54.33 Aligned_cols=105 Identities=12% Similarity=0.126 Sum_probs=77.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.++++.+|.++|.+..+.+++++|++.+-++ .++|..++.++.+.| ..+|+.++...+.+.+++ . ++
T Consensus 162 ~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~------~Gld~~~~~~~l~~~-~~~s~~~~~~~~~~~~~~-~-----~~ 228 (292)
T PRK15059 162 NGDGQTCKVANQIIVALNIEAVSEALLFASK------AGADPVRVRQALMGG-FASSRILEVHGERMIKRT-F-----NP 228 (292)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcC-cccCHHHHhhchhhhcCC-C-----CC
Confidence 3789999999999999999999999988664 349999999999877 467887766544332221 1 12
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|.- +-...+++-++..|-+.|+|+|....+..+|+..
T Consensus 229 ~f~l--~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a 266 (292)
T PRK15059 229 GFKI--ALHQKDLNLALQSAKALALNLPNTATCQELFNTC 266 (292)
T ss_pred CCch--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 2322 2234566888899999999999988888877643
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.01 Score=60.22 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=57.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPI---SVYNRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V---~v~dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||. |..|..+.+.|.++||++ ....++.+.-+.+.-.+ . .+...+ +..+ .+. +|+||+|+|
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g-~----~i~v~d~~~~~-~~~---vDvVf~A~g 72 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG-K----ELKVEDLTTFD-FSG---VDIALFSAG 72 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC-c----eeEEeeCCHHH-HcC---CCEEEECCC
Confidence 58999985 999999999999988864 55544433222221111 0 122221 2222 233 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+ ...++...+ +..|..|||.|+..
T Consensus 73 ~g-~s~~~~~~~---~~~G~~VIDlS~~~ 97 (334)
T PRK14874 73 GS-VSKKYAPKA---AAAGAVVIDNSSAF 97 (334)
T ss_pred hH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 87 445555444 34678999999754
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.036 Score=57.56 Aligned_cols=115 Identities=18% Similarity=0.164 Sum_probs=72.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCC----------hhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRT----------TSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~----------~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~ad 71 (484)
++|+|.|+|++|..+|+.|.+.|.+|. +.|.+ .+.+.+..+....-.++ +... -+.+++... .+|
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~-i~~~e~l~~--~~D 283 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDP-IDPDDILVE--PCD 283 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceE-ecCccceec--ccc
Confidence 589999999999999999999999888 66776 44443333221100000 0111 133444432 489
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+++-|--.+.-..+.+ +.+ +=++|+...|... +.+..+.|.++|+.|+.-
T Consensus 284 vliP~Al~~~I~~~na----~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 284 VLIPAALGGVINKENA----ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPD 333 (410)
T ss_pred EEeeccccccCCHhHH----HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEECh
Confidence 9888754442222332 333 4478888888864 556778889999988753
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0069 Score=57.41 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=50.6
Q ss_pred CeEEEEcccHHHHHHHHHH--HhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNI--AEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L--~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|+|||+|.+|..++..+ ...|+++. ++|+++++...... +.++....++.++++. .++|.+++|+|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~------g~~v~~~~~l~~li~~-~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIG------GIPVYHIDELEEVVKE-NDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeC------CeEEcCHHHHHHHHHH-CCCCEEEEeCCch
Confidence 4799999999999999863 35688766 57988766432211 1012223455666543 2489999999987
Q ss_pred chHHHHHHHH
Q 011501 81 SPVDQTIKTL 90 (484)
Q Consensus 81 ~~v~~vl~~l 90 (484)
. ..++.+.+
T Consensus 158 ~-~~~i~~~l 166 (213)
T PRK05472 158 A-AQEVADRL 166 (213)
T ss_pred h-HHHHHHHH
Confidence 4 44444433
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.046 Score=54.98 Aligned_cols=97 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh---CCCcEEEEeCChhHH---HHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE---KGFPISVYNRTTSKV---DETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~---~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi 74 (484)
|||+|||+ |.+|..++..|.. .++++.++|+++... -++... .. ...+.. .+++.+.++ .+|+||
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~-~~--~~~i~~~~~~d~~~~l~---~~DiVI 74 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHI-PT--AVKIKGFSGEDPTPALE---GADVVL 74 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcC-CC--CceEEEeCCCCHHHHcC---CCCEEE
Confidence 58999999 9999999988854 346899999985431 122110 00 001222 234334444 499999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|.-... .++++++.+.++ .+..+|+..||-.
T Consensus 75 itaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~-~~~~ivivvsNP~ 121 (312)
T PRK05086 75 ISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKT-CPKACIGIITNPV 121 (312)
T ss_pred EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEccCch
Confidence 9985421 122333444444 4566777777654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.034 Score=58.27 Aligned_cols=99 Identities=11% Similarity=0.113 Sum_probs=61.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-------CC--cEEEEeCChhHHHHHHHHhhhcC---CCCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-------GF--PISVYNRTTSKVDETVERAKQEG---NLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-------G~--~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~~~s~~e~~~~l~~a 70 (484)
-||+|||+ |.+|..+|..|+.. |. ++.++|++.++++...-...... .-.+....+..+..+. +
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kd---a 177 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQD---A 177 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCc---C
Confidence 48999999 99999999999987 65 78899999987655432221100 0023323333333444 9
Q ss_pred cEEEEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 71 RVIIMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 71 dvIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+||++--.+. . ++++.+.|..+..+..+||..||
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 99999764421 1 22333445453345666777764
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.021 Score=56.15 Aligned_cols=74 Identities=16% Similarity=0.328 Sum_probs=58.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|++++... .++++..++ ||+||.++..+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGk~~~ 215 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT---------------------QNLPSIVRQ---ADIIVGAVGKPEF 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEeCCCcCc
Confidence 57999996 4589999999999999999997432 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 216 i~------~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 216 IK------ADWISEGAVLLDAGYNP 234 (284)
T ss_pred cC------HHHcCCCCEEEEecCcc
Confidence 33 24688999999999764
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.021 Score=56.31 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=58.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 211 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT---------------------QDLPAVTRR---ADVLVVAVGRPHL 211 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 57999996 5689999999999999999987432 245566666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 212 i~------~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 212 IT------PEMVRPGAVVVDVGINR 230 (287)
T ss_pred cC------HHHcCCCCEEEEccCcc
Confidence 32 24688999999998764
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=56.15 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=58.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.+++..|.++|..|++++... .++.+.+++ ||+||.++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T---------------------~~l~~~~~~---ADIvIsAvGkp~~ 214 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT---------------------KNLKEVCKK---ADILVVAIGRPKF 214 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 4589999999999999999997431 255666676 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 215 ID------EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24588999999998654
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=56.61 Aligned_cols=74 Identities=14% Similarity=0.261 Sum_probs=58.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||- ..+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvIsAvGkp~~ 214 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR---------------------TQDLASITRE---ADILVAAAGRPNL 214 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCcCc
Confidence 57999996 458999999999999999998533 2255566676 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 215 IG------AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 32 24688999999998765
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.084 Score=56.02 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=33.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
++|.|||+|..|.+.|..|.+.|++|.++|..+.....+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l 48 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKA 48 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHH
Confidence 579999999999999999999999999999876544433
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.019 Score=55.94 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=59.7
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+. +|.+|+..|..+++.|++++... .++.+..++ +|+++.++--+..
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T---------------------~~l~~~~k~---ADIvv~AvG~p~~ 212 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT---------------------KDLASITKN---ADIVVVAVGKPHF 212 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC---------------------CCHHHHhhh---CCEEEEecCCccc
Confidence 5789999876 79999999999999999998542 245555666 9999999977644
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+. .+++++|.++||.+....
T Consensus 213 i~------~d~vk~gavVIDVGinrv 232 (283)
T COG0190 213 IK------ADMVKPGAVVIDVGINRV 232 (283)
T ss_pred cc------cccccCCCEEEecCCccc
Confidence 33 356889999999987753
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.11 Score=54.98 Aligned_cols=114 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH----HHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV----DETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~----~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v 77 (484)
++|.|+|.|.+|.+.|+.|++.|++|+++|++.... +.+.+.+ +... ....++... .+|+||.+.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g-------~~~~~~~~~~~~~~~--~~d~vV~s~ 76 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEG-------IKVICGSHPLELLDE--DFDLMVKNP 76 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcC-------CEEEeCCCCHHHhcC--cCCEEEECC
Confidence 579999999999999999999999999999875332 2232222 2222 233343321 278877754
Q ss_pred --CCCch-HHHHH---------HHHhhhc-CCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 78 --KAGSP-VDQTI---------KTLSVYM-EKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 78 --p~~~~-v~~vl---------~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
|.+.. ++... .++...+ ....|-|-.|++.-.++.-+...+...|....
T Consensus 77 gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~ 138 (447)
T PRK02472 77 GIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHAL 138 (447)
T ss_pred CCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeE
Confidence 33322 22221 1222222 22344555666665555556667777665443
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.021 Score=56.07 Aligned_cols=74 Identities=15% Similarity=0.292 Sum_probs=57.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T---------------------~~l~~~~~~---ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT---------------------RNLKQLTKE---ADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999964 589999999999999999986331 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 213 i~------~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 213 IG------ADAVKPGAVVIDVGISR 231 (282)
T ss_pred cC------HHHcCCCcEEEEeeccc
Confidence 33 24688999999998754
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.029 Score=53.70 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=70.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|||+|.+|..+|.+|++.|. +++++|.+.=....+..+.- .....+-.-+....+.++.+ .+++-+...+..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~i~~~~~~ 99 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI-NPDVEIEAYNER 99 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh-CCCCEEEEecce
Confidence 3589999999999999999999997 78899877533333322110 00000000011112222222 255555555443
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
- ..+-+. +.+..-++||++... +..-..+.+.+.+.++.++.+.+.|
T Consensus 100 i-~~~~~~---~~~~~~DvVi~~~d~-~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 100 L-DAENAE---ELIAGYDLVLDCTDN-FATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred e-CHHHHH---HHHhCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 111222 233445889988664 4444556667777889898887655
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.013 Score=59.36 Aligned_cols=95 Identities=19% Similarity=0.293 Sum_probs=56.0
Q ss_pred CC-CCeEEEEcc-cHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 1 MV-QTRIGLAGL-AVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~-~~~IgiIGl-G~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|+ |++|+|+|. |..|..+.+.|.+++|.+. .. .+.+...+....... .+.+... +..++ +. +|++|+
T Consensus 1 m~~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~--~l~~~~~-~~~~~-~~---vD~vFl 72 (336)
T PRK05671 1 MSQPLDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGK--NLRVREV-DSFDF-SQ---VQLAFF 72 (336)
T ss_pred CCCCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCc--ceEEeeC-ChHHh-cC---CCEEEE
Confidence 54 469999996 9999999999998777433 33 222221110100000 0011111 22333 44 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|++ ....++..+. ..|..|||.|+..
T Consensus 73 a~p~~-~s~~~v~~~~---~~G~~VIDlS~~f 100 (336)
T PRK05671 73 AAGAA-VSRSFAEKAR---AAGCSVIDLSGAL 100 (336)
T ss_pred cCCHH-HHHHHHHHHH---HCCCeEEECchhh
Confidence 99976 4444444443 4688999999875
|
|
| >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.03 Score=56.13 Aligned_cols=127 Identities=21% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--------CCcEE---EEeCChhHHHHHHHHhhhcCCCCeeecCCH-----hHHH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--------GFPIS---VYNRTTSKVDETVERAKQEGNLPLYGFHDP-----ESFV 64 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--------G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~-----~e~~ 64 (484)
|+..+|+|+|+|.+|+++++.|.++ |.++. +.+|+......+..... ....++. .+++
T Consensus 1 ~~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 74 (333)
T COG0460 1 MKTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNA------EVWTTDGALSLGDEVL 74 (333)
T ss_pred CceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccch------hhheecccccccHhhh
Confidence 5667999999999999999999875 33333 44776655431110000 0122233 3444
Q ss_pred hhcCCCcEEEEecCC-CchHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHHHcCCe-EEeccCCCCHH
Q 011501 65 HSIQKPRVIIMLVKA-GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVAELGLL-YLGMGVSGGEE 135 (484)
Q Consensus 65 ~~l~~advIi~~vp~-~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~-~i~~pv~gg~~ 135 (484)
.. +..|+|+-+++. -...+. ++.+...+..|..||-......... .++.+..++.|.. +.++.|.||-+
T Consensus 75 ~~-~~~dvvve~~~~d~~~~~~-~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiP 146 (333)
T COG0460 75 LD-EDIDVVVELVGGDVEPAEP-ADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIP 146 (333)
T ss_pred cc-ccCCEEEecCcccCCchhh-HHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcc
Confidence 33 347899998887 444555 6777788888988886554432111 1344444555654 56677777654
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.022 Score=55.93 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=58.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++...+ ||+||.++..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 213 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEcCCCcCc
Confidence 579999965 589999999999999999987542 245556666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.. .++++|.+|||.+...
T Consensus 214 i~~------~~vk~GavVIDvGin~ 232 (282)
T PRK14166 214 LRS------DMVKEGVIVVDVGINR 232 (282)
T ss_pred cCH------HHcCCCCEEEEecccc
Confidence 332 3588999999998664
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.022 Score=56.23 Aligned_cols=74 Identities=16% Similarity=0.295 Sum_probs=58.3
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++... .++++.+++ ||+||.++..+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T---------------------~~l~~~~~~---ADIvVsAvGkp~~ 216 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT---------------------RDLADYCSK---ADILVAAVGIPNF 216 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999965 589999999999999999988532 245566666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 217 i~------~~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 217 VK------YSWIKKGAIVIDVGINS 235 (294)
T ss_pred cC------HHHcCCCCEEEEecccc
Confidence 33 24578999999998764
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=55.87 Aligned_cols=117 Identities=12% Similarity=0.047 Sum_probs=67.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
++|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.+.+.+.. ..+.......+.... +|+||.+ +|.
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~---~~~~~g~~~~~~~~~---~d~vv~sp~I~~ 81 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPD---AEFVGGPFDPALLDG---VDLVALSPGLSP 81 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCC---cEEEeCCCchhHhcC---CCEEEECCCCCC
Confidence 5799999999999999999999999999997543 22334332210 011111122334444 8998886 444
Q ss_pred C-----chHHHH-------------HHHHhhhc-----CCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 G-----SPVDQT-------------IKTLSVYM-----EKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~-----~~v~~v-------------l~~l~~~l-----~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
. ..+... +..+...+ .+..|-|-.|+++-.++.-+...|...|....
T Consensus 82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~ 151 (498)
T PRK02006 82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVA 151 (498)
T ss_pred cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEE
Confidence 2 111111 11122111 11235555666665556666777777776543
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.023 Score=55.81 Aligned_cols=74 Identities=18% Similarity=0.269 Sum_probs=57.5
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++... .++.+..++ ||+||.++..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T---------------------~dl~~~~k~---ADIvIsAvGkp~~ 214 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 214 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHhhh---cCEEEEccCCcCc
Confidence 579999964 589999999999999999987432 244455566 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~vk~gavVIDvGin~ 233 (282)
T PRK14180 215 IT------ADMVKEGAVVIDVGINH 233 (282)
T ss_pred CC------HHHcCCCcEEEEecccc
Confidence 33 24588999999998654
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.024 Score=57.01 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=49.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
|+|.|+| .|.+|+.++..|.++||+|.+.+|++++...+...+. .+.. ..+++.+.+.++.+|+||-++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v-----~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGA-----ELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCC-----EEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899998 5999999999999999999999999776544332211 0111 1244445555556899888754
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.013 Score=53.24 Aligned_cols=82 Identities=22% Similarity=0.422 Sum_probs=57.1
Q ss_pred CCeEEEEcccHHHHHHHHH-HH-hCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALN-IA-EKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~-L~-~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+.++.+||.|++|.+++.. +. ++|+++ .+||.+++++-.... +..+.-.++++..++.. ..|+.|+|||.
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~------~v~V~~~d~le~~v~~~-dv~iaiLtVPa 156 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG------DVPVYDLDDLEKFVKKN-DVEIAILTVPA 156 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC------CeeeechHHHHHHHHhc-CccEEEEEccH
Confidence 3579999999999999843 33 567764 578999987544332 11344456677777642 48999999998
Q ss_pred CchHHHHHHHHhh
Q 011501 80 GSPVDQTIKTLSV 92 (484)
Q Consensus 80 ~~~v~~vl~~l~~ 92 (484)
. ..+++.+.|..
T Consensus 157 ~-~AQ~vad~Lv~ 168 (211)
T COG2344 157 E-HAQEVADRLVK 168 (211)
T ss_pred H-HHHHHHHHHHH
Confidence 6 66777766554
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.036 Score=54.63 Aligned_cols=125 Identities=18% Similarity=0.218 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|-+|+.++.+|++.|. ++.++|.+.=....+..+.. .....+-.-+....+.+.++ .+++=|.+.+..-
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~i-NP~v~V~~~~~~l 106 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDI-NPELEIRAFPEGI 106 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHH-CCCCEEEEEeccc
Confidence 589999999999999999999997 78899887544444432210 00000001111222223322 1444454444321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC-hHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW-YENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+-+.++ +..-++|||++... ...-..+.+.+...++.++.+.+.|-
T Consensus 107 ~-~~n~~~l---l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~ 155 (287)
T PRK08223 107 G-KENADAF---LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGM 155 (287)
T ss_pred C-ccCHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 1 1112233 33458999988653 23444556677788998888765543
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.024 Score=56.08 Aligned_cols=74 Identities=19% Similarity=0.355 Sum_probs=58.0
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+ .+|.++|..|.++|..|++++.. +.++++.+++ +|+||.++..+..
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~---------------------T~nl~~~~~~---ADIvv~AvGk~~~ 223 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR---------------------TPDPESIVRE---ADIVIAAAGQAMM 223 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 589999975 58999999999999999999643 1256666776 9999999977632
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 224 i~------~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 224 IK------GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 22 24688999999998764
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.11 Score=51.58 Aligned_cols=105 Identities=12% Similarity=0.163 Sum_probs=75.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.++++.+|.++|.+.++.+..++|++.+..+. ++|..++.++|+.+ ...|.+++.....+.+.+ .. +
T Consensus 165 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gi~~~~~~~~l~~~-~~~s~~~~~~~~~~~~~d-~~-----~ 231 (296)
T PRK11559 165 IGAGNVTKLANQVIVALNIAAMSEALVLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDRN-FK-----P 231 (296)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhcC-cccCHHHHhhchHhhcCC-CC-----C
Confidence 36889999999999999999999999987753 49999999999876 456666654433222211 11 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|. ++-..-+++-++..|-+.|+|+|....+...|+..
T Consensus 232 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~~ 269 (296)
T PRK11559 232 GFR--IDLHIKDLANALDTSHGVGAPLPLTAAVMEMMQAL 269 (296)
T ss_pred Ccc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 121 11223345778889999999999999999866543
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.1 Score=54.88 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=70.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHH---HHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec-
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDE---TVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV- 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~---~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v- 77 (484)
+|.|||+|..|.++|+.|.+.|++|+++|..+.. ... +.+.. . ++... .+ .+.+.. +|+||.+-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~--~---gi~~~~g~~-~~~~~~---~d~vv~sp~ 71 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLN--E---GSVLHTGLH-LEDLNN---ADLVVKSPG 71 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhc--c---CcEEEecCc-hHHhcc---CCEEEECCC
Confidence 5899999999999999999999999999976542 111 11100 0 13222 23 233343 89888754
Q ss_pred -CCCch-HHHHH---------HHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 -KAGSP-VDQTI---------KTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 -p~~~~-v~~vl---------~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.+.. +.... .+++ ..+....|-|-.|++.-.++.-+...|...|..+.-++..|.+
T Consensus 72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 33322 22111 1222 2232234555666666556666677788877765554444443
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.013 Score=58.57 Aligned_cols=94 Identities=34% Similarity=0.630 Sum_probs=71.9
Q ss_pred HHHHhHHHHHHHHHHH--hCCCCHHHHHHHHHhhccCc-chhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHH
Q 011501 194 YGDMQLIAEAYDVLKS--VGKLSNEELQQVFSEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWT 270 (484)
Q Consensus 194 ~~~~~~~~Ea~~l~~~--~g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~ 270 (484)
++.++.++|++.++++ .| +|++++.++ |+.+. ++|++++...+++..++.+ ..+..+.++ +.+.+|+
T Consensus 181 ~~~~~~~aEa~~l~~~~~~g-ld~~~~~~~---~~~~~~~~s~~l~~~~~~~~~~~~~---~~~~~~~kd---~~~~~~~ 250 (301)
T PRK09599 181 YGMMQAYAEGFELLEASRFD-LDLAAVAEV---WRRGSVIRSWLLDLTADALAEDPKL---DEISGYVED---SGEGRWT 250 (301)
T ss_pred HHHHHHHHHHHHHHHHcCCC-CCHHHHHHH---HhCCcHHHHHHHHHHHHHHhcCCCH---HHHHHHHHh---hCcHHHH
Confidence 4567899999999999 98 999998776 56664 6999999998888543211 113344444 2344799
Q ss_pred HHHHHHcCCCcchHHHHHHHHHHhcCc
Q 011501 271 VQQAADLSVAAPTIESSLDARFLSGLK 297 (484)
Q Consensus 271 ~~~A~~~gvp~p~~~~av~~r~~s~~~ 297 (484)
++.|.+.|+|+|++..+++.|+.+...
T Consensus 251 ~~~A~~~~~~~P~~~~a~~~~~~~~~~ 277 (301)
T PRK09599 251 VEEAIDLAVPAPVIAAALFMRFRSRQE 277 (301)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccC
Confidence 999999999999999988888887754
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.096 Score=55.38 Aligned_cols=121 Identities=17% Similarity=0.109 Sum_probs=70.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEec--
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~v-- 77 (484)
.|.|||+|..|.++|+.|.+.|++|+++|..+.. .+.+.+... ++... .+. +.+.. +|+||.+-
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~-----g~~~~~~~~~~-~~~~~---~d~vV~sp~i 78 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFP-----DVELRCGGFDC-ELLVQ---ASEIIISPGL 78 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcC-----CcEEEeCCCCh-HHhcC---CCEEEECCCC
Confidence 5999999999999999999999999999976532 223332100 12222 233 33344 88887743
Q ss_pred CCCch-HHHHH---------HHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 78 KAGSP-VDQTI---------KTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 78 p~~~~-v~~vl---------~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
|.+.. +.... -+++.. +....+-|-.|+++-.++.-+...|...|..+.-++..|.+
T Consensus 79 ~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 79 ALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 33222 22111 123322 22233455566666555556677777777766555555443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.042 Score=54.83 Aligned_cols=36 Identities=17% Similarity=0.373 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKV 39 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~ 39 (484)
+||+|||.|.+|+++|..|...+. ++.+||++.++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc
Confidence 489999999999999999987664 799999996543
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.036 Score=54.51 Aligned_cols=109 Identities=11% Similarity=0.085 Sum_probs=72.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++.|+|.|-.+++++..|++.|. +|+++||++++.+.+.+... ... .+++ . ...+|+||-|+|-+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~------~~~---~~~~-~-~~~~dlvINaTp~Gm~ 191 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYG------YEW---RPDL-G-GIEADILVNVTPIGMA 191 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhC------Ccc---hhhc-c-cccCCEEEECCccccC
Confidence 368999999999999999999997 59999999999888776431 111 1111 1 1238999999986521
Q ss_pred --HHH---HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 --VDQ---TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 --v~~---vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+. -+. ...+.++.+++|.--.+. .| .+.+..+++|...++
T Consensus 192 ~~~~~~~~pi~--~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 192 GGPEADKLAFP--EAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVIT 237 (272)
T ss_pred CCCccccCCCC--HHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeC
Confidence 000 011 124677889999876543 33 345556677765553
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.13 Score=54.95 Aligned_cols=115 Identities=14% Similarity=0.088 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEecCC-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLVKA- 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~vp~- 79 (484)
++|.|||.|..|..+|..|++.|++|+++|+++. ....+.+..... ++... .... .. ..+|+||++.--
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~---gv~~~~~~~~~-~~---~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL---GATVRLGPGPT-LP---EDTDLVVTSPGWR 89 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc---CCEEEECCCcc-cc---CCCCEEEECCCcC
Confidence 5799999999999999999999999999996643 222222222111 13322 2222 22 238999987622
Q ss_pred --CchHHHHH---------HHHh-hhcCCC----CEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 80 --GSPVDQTI---------KTLS-VYMEKG----DCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 80 --~~~v~~vl---------~~l~-~~l~~g----~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
...+...- -+++ ..+.+. .|-|-.|+++-.++.-+...+...|...
T Consensus 90 ~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 90 PDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred CCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 21111111 1222 222221 3555566666555555666777766543
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.052 Score=50.79 Aligned_cols=121 Identities=17% Similarity=0.277 Sum_probs=70.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh--hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK--QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~--~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|.|||+|.+|..++++|+..|. +++++|.+.=....+..+.- .. ..+-.-+....+.++.+ .+++-+.+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~-diG~~Ka~a~~~~L~~l-Np~v~i~~~~~~ 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAE-DLGQNRAEASLERLRAL-NPRVKVSVDTDD 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHH-HcCchHHHHHHHHHHHH-CCCCEEEEEecC
Confidence 589999999999999999999998 69999977433222221100 00 00000011122222222 267766665432
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.+...++ +..=++||++.. .+.....+.+.+.++++.|+.+.+.|
T Consensus 100 --~~~~~~~~---~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G 145 (197)
T cd01492 100 --ISEKPEEF---FSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHG 145 (197)
T ss_pred --ccccHHHH---HhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 11112222 334478888765 35555667777888899888887654
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.031 Score=54.93 Aligned_cols=74 Identities=18% Similarity=0.343 Sum_probs=57.4
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+.-
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T---------------------~nl~~~~~~---ADIvI~AvGk~~~ 213 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT---------------------ADLAGEVGR---ADILVAAIGKAEL 213 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEecCCcCc
Confidence 579999965 589999999999999999986431 245566666 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 214 i~------~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 214 VK------GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred cC------HHHcCCCCEEEEeecee
Confidence 22 24588999999998764
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.031 Score=55.05 Aligned_cols=74 Identities=12% Similarity=0.272 Sum_probs=57.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|++++... .++++.+.+ ||+||.++..+.-
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t---------------------~~l~~~~~~---ADIvI~AvG~p~~ 214 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT---------------------KNLAELTKQ---ADILIVAVGKPKL 214 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc---------------------hhHHHHHHh---CCEEEEecCCCCc
Confidence 57999996 5689999999999999999996432 245556666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 215 i~------~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 215 IT------ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CC------HHHcCCCCEEEEeeccc
Confidence 22 23578999999998664
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.029 Score=55.27 Aligned_cols=74 Identities=12% Similarity=0.303 Sum_probs=57.6
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|++++.. +.++++..++ +|+||.++..+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~---------------------T~~L~~~~~~---ADIvV~AvGkp~~ 215 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK---------------------THNLSSITSK---ADIVVAAIGSPLK 215 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccCCCCc
Confidence 579999965 58999999999999999998743 1245566666 9999999987743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 216 i~------~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 216 LT------AEYFNPESIVIDVGINR 234 (288)
T ss_pred cC------HHHcCCCCEEEEeeccc
Confidence 33 24688999999998653
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.026 Score=56.99 Aligned_cols=34 Identities=15% Similarity=0.371 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 37 (484)
++|-|||+|.||.-.+++|.++|. +|++.||+..
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 589999999999999999999996 6999999975
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.036 Score=54.56 Aligned_cols=74 Identities=12% Similarity=0.258 Sum_probs=57.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++.|||- ..+|.++|..|.+ ++..|+++... +.++++.+++ ||+||.++..+
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~---------------------T~~l~~~~k~---ADIvV~AvGkp 214 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG---------------------TRDLAAHTRR---ADIIVAAAGVA 214 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC---------------------CCCHHHHHHh---CCEEEEecCCc
Confidence 57999996 5689999999998 68899998753 1255666676 99999999887
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+. ..++++|.+|||.+...
T Consensus 215 ~~i~------~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 215 HLVT------ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CccC------HHHcCCCCEEEEccccc
Confidence 5332 24688999999998765
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.069 Score=51.75 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+..- ....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~l-np~v~i~~~~~~i 111 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARI-NPHIAIETINARL 111 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999997 788998775443333322100 0000000111122222222 2566666655431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+-+. ..+..-++|||++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 112 ~-~~~~~---~~~~~~DiVi~~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g 157 (245)
T PRK05690 112 D-DDELA---ALIAGHDLVLDCTDN-VATRNQLNRACFAAKKPLVSGAAIR 157 (245)
T ss_pred C-HHHHH---HHHhcCCEEEecCCC-HHHHHHHHHHHHHhCCEEEEeeecc
Confidence 1 11122 234456899999764 3443445666677888888865543
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.059 Score=53.82 Aligned_cols=95 Identities=11% Similarity=0.131 Sum_probs=57.5
Q ss_pred EEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC---CCCeeecCCHhHHHhhcCCCcEEEEecCCCc-
Q 011501 8 LAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG---NLPLYGFHDPESFVHSIQKPRVIIMLVKAGS- 81 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~~~s~~e~~~~l~~advIi~~vp~~~- 81 (484)
|||+|.+|.++|..|+..+. ++.++|++.++++.......... ..+.+...+..+..+. +|+||++.-.+.
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~d---aDivVitag~~rk 77 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKD---ADLVVITAGAPQK 77 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCC---CCEEEECCCCCCC
Confidence 69999999999999998876 79999998876544433221110 0022333232233344 999999764321
Q ss_pred ---h-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 ---P-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ---~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
. ++++.+.+..+ .+..++|..||-
T Consensus 78 ~g~~R~dll~~N~~i~~~~~~~i~~~-~p~~~vivvsNP 115 (299)
T TIGR01771 78 PGETRLELVGRNVRIMKSIVPEVVKS-GFDGIFLVATNP 115 (299)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCH
Confidence 1 33334555554 456667777753
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.061 Score=51.28 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=51.7
Q ss_pred EEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 6 IGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 6 IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|.|+|. |.+|+.++..|.+.+++|.+.-|++.+ .+.+...+... +.. ..+.+.+.+.++.+|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v----v~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV----VEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE----EES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE----eecccCCHHHHHHHHcCCceEEeecCcc
Confidence 689985 999999999999999999999998743 44555443210 111 235667777777899999998843
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.045 Score=59.10 Aligned_cols=113 Identities=19% Similarity=0.215 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++-|+|.|-+|.+++..|++.|++|+++||+.++.+.+.+.... ......+..+... ..+|+|+-++|.+..-
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~----~~~~~~~~~~~~~--~~~diiINtT~vGm~~ 453 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGG----QALTLADLENFHP--EEGMILANTTSVGMQP 453 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC----ceeeHhHhhhhcc--ccCeEEEecccCCCCC
Confidence 468899999999999999999999999999999988887754321 1111222222111 1267888777765311
Q ss_pred --HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 84 --DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 84 --~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+. -+. ...++++.+++|..-.+.. | .+.+..+++|...+
T Consensus 454 ~~~~~pl~--~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~ 495 (529)
T PLN02520 454 NVDETPIS--KHALKHYSLVFDAVYTPKI-T-RLLREAEESGAIIV 495 (529)
T ss_pred CCCCCccc--HhhCCCCCEEEEeccCCCc-C-HHHHHHHHCCCeEe
Confidence 10 011 1236677899998766533 3 34455566666544
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.058 Score=52.10 Aligned_cols=124 Identities=14% Similarity=0.207 Sum_probs=73.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|..+|.+|++.|. +++++|.+.-....+..+..- ....+-.-+....+.+..+ .+++-+.+++..-
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i-np~v~i~~~~~~i 103 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI-NPHIAINPINAKL 103 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH-CCCcEEEEEeccC
Confidence 589999999999999999999997 788999876544443322100 0000000011112222222 2666666665431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+. +...+..-++|||++-.. .....+.+.+.+.++.|+.+.+.|.
T Consensus 104 ~-~~~---~~~~~~~~DlVvd~~D~~-~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 104 D-DAE---LAALIAEHDIVVDCTDNV-EVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred C-HHH---HHHHhhcCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEEeccc
Confidence 1 112 223345668999998663 4444566777788998888765543
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.033 Score=56.25 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=56.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHHhhhc---CCCCeeecCCHhHHHhhcCCCc
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKQE---GNLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~~~~~~~~~---~~~~~~~~~s~~e~~~~l~~ad 71 (484)
||+|||+ |.+|..+|..|+..|. ++.++|+++ ++.+......... .........+..+.++. +|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~---aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD---VD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC---CC
Confidence 7999999 9999999999997663 499999987 5432211110000 00012222344444554 99
Q ss_pred EEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 72 VIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 72 vIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+||++--.+ .. ++++...+.++..+..++|-.||
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999876332 11 33334455555445556666653
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.033 Score=54.67 Aligned_cols=74 Identities=12% Similarity=0.213 Sum_probs=57.1
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ ..|.++|..|...|..|++++++.. ++++.++. +|+||.+++.+.-
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~---------------------~L~~~~~~---ADIvI~Avgk~~l 208 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKTE---------------------NLKAELRQ---ADILVSAAGKAGF 208 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecChh---------------------HHHHHHhh---CCEEEECCCcccc
Confidence 579999998 8999999999999999999986532 34445555 9999999975532
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. . .++++|.+|||.+...
T Consensus 209 v~---~---~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 209 IT---P---DMVKPGATVIDVGINQ 227 (279)
T ss_pred cC---H---HHcCCCcEEEEeeccc
Confidence 22 1 2368999999998654
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.18 Score=47.82 Aligned_cols=42 Identities=10% Similarity=0.271 Sum_probs=36.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
||+-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+.
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~ 43 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE 43 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh
Confidence 36888876 8899999999999999999999999887766543
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.039 Score=55.49 Aligned_cols=74 Identities=19% Similarity=0.325 Sum_probs=57.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.++|..|.++|..|+++.... .++++..++ ||+||.++..+.-
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T---------------------~nl~~~~~~---ADIvIsAvGkp~~ 270 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT---------------------KDPEQITRK---ADIVIAAAGIPNL 270 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC---------------------CCHHHHHhh---CCEEEEccCCcCc
Confidence 579999965 589999999999999999986432 245566666 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 271 v~------~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 271 VR------GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred cC------HHHcCCCCEEEEccccc
Confidence 33 24688999999998764
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.13 Score=53.14 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=58.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC-c----EE--EE--eCChhHHHHHHHHhhhcC--C-CCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF-P----IS--VY--NRTTSKVDETVERAKQEG--N-LPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~-~----V~--v~--dr~~~~~~~~~~~~~~~~--~-~~~~~~~s~~e~~~~l~~a 70 (484)
-||+|||+ |.+|.++|..|+..|. . |. ++ |++.++++...-.....- . .++....+..+.++. +
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kd---a 121 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFED---A 121 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCC---C
Confidence 48999999 9999999999998764 2 33 44 888887654432221100 0 023323333333444 9
Q ss_pred cEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 71 RVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 71 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+||++--.+ .. ++++...+..+..+..+||..||
T Consensus 122 DIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 122 DWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 9999976332 11 23333455555556677777775
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.22 Score=48.31 Aligned_cols=118 Identities=15% Similarity=0.130 Sum_probs=71.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCC----C-----CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGN----L-----PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~----~-----~~~~~~s~~e~ 63 (484)
.+|.|-|.|++|...|+.|.+.|.+|. +.|. +.+.++.+.+.....+. + +.+.. +.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 589999999999999999999999887 5562 23334332221111000 0 01222 44454
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .||+++-|--.+.-..+.+..|.. .+=++|+...|.+. +.+..+.|.++|+.++.-
T Consensus 118 ~~~--~~DIliPcAl~~~I~~~na~~i~~--~~ak~I~EgAN~p~--t~~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEV--PCDIAFPCATQNEVDAEDAKLLVK--NGCKYVAEGANMPC--TAEAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcC--CCcEEEeccccccCCHHHHHHHHH--cCCEEEEeCCCCCC--CHHHHHHHHHCCcEEECc
Confidence 442 489998885544333333333321 13367888888763 336778889999988754
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.045 Score=53.90 Aligned_cols=74 Identities=14% Similarity=0.288 Sum_probs=56.9
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++... +.++++.+++ ||+||.++.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~---------------------T~~l~~~~~~---ADIvV~AvG 209 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ---------------------SENLTEILKT---ADIIIAAIG 209 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC---------------------CCCHHHHHhh---CCEEEEccC
Confidence 579999965 5899999999988 7889988643 1245566666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 210 ~p~~i~------~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 210 VPLFIK------EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CcCccC------HHHcCCCCEEEEecccc
Confidence 774322 24688999999998764
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.15 Score=50.34 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=79.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH-HHccCCCCCCcccc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKK-AYDRNPDLANVLVD 399 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~-~~~~~~~~~~ll~~ 399 (484)
.|.|+.+|+++|=+-.+.+++++|++.+-+++ + +|.+.+.++-++| --+|+.++.-.. .++++ ++
T Consensus 164 ~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~----G--ld~~~~~~vi~~~-~~~s~~~e~~~~~m~~~~-------~~ 229 (286)
T COG2084 164 VGAGQAAKLANNILLAGNIAALAEALALAEKA----G--LDPDVVLEVISGG-AAGSWILENYGPRMLEGD-------FS 229 (286)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcc-ccCChHHHhhcchhhcCC-------CC
Confidence 47899999999999999999999999997764 3 9999999999887 357888766322 22222 12
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhc
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYR 441 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~ 441 (484)
+-|. ++-...+++-+...|.+.|+|+|..+.+.+.|+...
T Consensus 230 p~F~--v~~~~KDl~la~~~A~~~g~~lP~~~~~~~ly~~~~ 269 (286)
T COG2084 230 PGFA--VDLMLKDLGLALDAAKELGAPLPLTALAAELYAKAA 269 (286)
T ss_pred cchh--HHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHH
Confidence 3332 233456678888899999999999999998776443
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.043 Score=55.51 Aligned_cols=74 Identities=22% Similarity=0.331 Sum_probs=58.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||- ..+|.++|..|.++|..|+++... +.++++.+++ ||+||.++..+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~---------------------T~nl~~~~r~---ADIVIsAvGkp~~ 287 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR---------------------TKNPEEITRE---ADIIISAVGQPNM 287 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC---------------------CCCHHHHHhh---CCEEEEcCCCcCc
Confidence 57999996 458999999999999999998643 2355666676 9999999988754
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 288 i~------~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 288 VR------GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CC------HHHcCCCCEEEeccccc
Confidence 33 24688999999998654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.083 Score=50.19 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+..
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~ 47 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAA 47 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence 57889975 999999999999999999999999877655443
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.14 Score=52.13 Aligned_cols=128 Identities=17% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHh--------CCC--c-EEEEeCChhH-------HHHHHHHhhhcCCC-Cee----e-cC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAE--------KGF--P-ISVYNRTTSK-------VDETVERAKQEGNL-PLY----G-FH 58 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~--------~G~--~-V~v~dr~~~~-------~~~~~~~~~~~~~~-~~~----~-~~ 58 (484)
..+|+|+|+|++|+.+++.|.+ .|. + |.+.|++... .+++.+.....+.. .+. . ..
T Consensus 2 ~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (336)
T PRK08374 2 EVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNF 81 (336)
T ss_pred eeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCC
Confidence 3689999999999999998887 464 3 3345654221 22222211110000 010 0 11
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEEe-ccCCCCHH
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYLG-MGVSGGEE 135 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~-~pv~gg~~ 135 (484)
++++++... .+|+||-+++.. ...+.. ...+..|.-||-.++.... .-.++.+..+++|..+.- +.+++|.+
T Consensus 82 ~~~ell~~~-~~DVvVd~t~~~-~a~~~~---~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 82 SPEEIVEEI-DADIVVDVTNDK-NAHEWH---LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred CHHHHHhcC-CCCEEEECCCcH-HHHHHH---HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 666776432 389999888543 444443 3445577777777664211 222344444556766544 44665543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.14 Score=53.00 Aligned_cols=123 Identities=16% Similarity=0.249 Sum_probs=68.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|..|..++.+|++.|. +++++|.+.-....+..+.- .+...+..-.....+.+..+ .+++-+...+..-
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~~ 214 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAAL-NPDVQVEAVQERV 214 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 579999999999999999999998 79999988433222221110 00000000011112222211 1445444443321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. ...+..+ +..-++|||++... ..-..+.+.+.+.++.|+.+.+.|
T Consensus 215 ~-~~~~~~~---~~~~D~Vv~~~d~~-~~r~~ln~~~~~~~ip~i~~~~~g 260 (376)
T PRK08762 215 T-SDNVEAL---LQDVDVVVDGADNF-PTRYLLNDACVKLGKPLVYGAVFR 260 (376)
T ss_pred C-hHHHHHH---HhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEecc
Confidence 1 1222222 33458999998764 333345666778899898887654
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.17 Score=51.93 Aligned_cols=124 Identities=15% Similarity=0.215 Sum_probs=71.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|+.++.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+-+..+ .+++-+.+.+..-
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~v~~~~~~i 107 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLAL-NPDVKVTVSVRRL 107 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHH-CCCcEEEEEEeec
Confidence 589999999999999999999997 78899987533322222100 00000000011112222222 2677776665432
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
..+. ....+..-++|||++-.. ..-..+...+.+.++.|+.+.+.|-
T Consensus 108 ~~~~----~~~~~~~~DvVvd~~d~~-~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 108 TWSN----ALDELRDADVILDGSDNF-DTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred CHHH----HHHHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEecC
Confidence 2121 222344568999998654 3333455666778888888776653
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.15 Score=54.22 Aligned_cols=110 Identities=17% Similarity=0.192 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEec--C
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLV--K 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~v--p 78 (484)
++|.|||+|..|.+ +|+.|.+.|++|+++|.++.. .+.+.+.+ +... ....+.+.. +|+||.+- |
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~~~~~~~~~~---~d~vv~spgi~ 77 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELG-------AIIFIGHDAENIKD---ADVVVYSSAIP 77 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHCCC---CCEEEECCCCC
Confidence 57999999999999 899999999999999976542 23333221 3332 122233333 89888754 3
Q ss_pred CCc-hHHHHH---------HHHhhh-cCC-CCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 79 AGS-PVDQTI---------KTLSVY-MEK-GDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 79 ~~~-~v~~vl---------~~l~~~-l~~-g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
... .+.... -+++.. +.+ ..+-|-.|+++-.++.-+...++..|.
T Consensus 78 ~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 78 DDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred CCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 322 222211 123222 222 345566677776666666777777774
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.054 Score=54.26 Aligned_cols=81 Identities=10% Similarity=0.221 Sum_probs=53.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+.+|+||| .|..|..|.+.|.++.+ ++.....+..+ . . .+.++..+. +|++|+|+|++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~--~------------~---~~~~~~~~~---~DvvFlalp~~ 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK--D------------A---AARRELLNA---ADVAILCLPDD 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC--c------------c---cCchhhhcC---CCEEEECCCHH
Confidence 56999999 69999999999998864 33322222111 0 1 122333344 89999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+...++. ..|..|||.|+..
T Consensus 62 -~s~~~~~~~~---~~g~~VIDlSadf 84 (313)
T PRK11863 62 -AAREAVALID---NPATRVIDASTAH 84 (313)
T ss_pred -HHHHHHHHHH---hCCCEEEECChhh
Confidence 4444444443 4688999999764
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.18 Score=52.33 Aligned_cols=112 Identities=9% Similarity=0.113 Sum_probs=69.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~~ 82 (484)
.|-|+|.|.+|..+++.|.+.|++|.+.|.+. .++....+.. -+.+..+-++..+ .+++|+.|+++.+++..
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~----vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~ 315 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDAD----LIPGDSSDSAVLKKAGAARARAILALRDNDAD 315 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCc----EEEeCCCCHHHHHhcCcccCCEEEEcCCChHH
Confidence 58899999999999999999999999998763 2332222211 1333334444443 35679999999887643
Q ss_pred HHHHHHHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++.... .+.+ ..+|+-..+. +..+.+++.|...+=.|
T Consensus 316 Nl~ivL~ar-~l~p~~kIIa~v~~~------~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAK-EMSSDVKTVAAVNDS------KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHH-HhCCCCcEEEEECCH------HHHHHHHhcCCCEEECH
Confidence 333333332 3434 4566655442 23455566788776655
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.21 Score=52.72 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=67.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec-
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v- 77 (484)
.++|.|+|.|..|.+.|+.|++.|+.|.++|.++.. .+++.+.. . ++... ...++.... +|+||.+.
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~--~---gi~~~~g~~~~~~~~~---~d~vv~spg 76 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMF--D---GLVFYTGRLKDALDNG---FDILALSPG 76 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhcc--C---CcEEEeCCCCHHHHhC---CCEEEECCC
Confidence 358999999999999999999999999999976543 23332210 0 13222 112233334 89998864
Q ss_pred -CCC-chHHHHH---------HHHh-hhcC---CCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 78 -KAG-SPVDQTI---------KTLS-VYME---KGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 78 -p~~-~~v~~vl---------~~l~-~~l~---~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
|++ ..+.... -+++ ..++ ...|-|-.|+++-.++.-+...|...|....
T Consensus 77 i~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~ 140 (445)
T PRK04308 77 ISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTV 140 (445)
T ss_pred CCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeE
Confidence 322 1222221 1222 2221 1235555666665555666777777776543
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.14 Score=58.31 Aligned_cols=111 Identities=12% Similarity=0.108 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHH-HHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEec--
Q 011501 3 QTRIGLAGLAVMGQNL-ALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~l-A~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~v-- 77 (484)
+++|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.+ +... ....+.+.. +|+||.+-
T Consensus 4 ~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~g-------i~~~~g~~~~~~~~---~d~vV~SpgI 73 (809)
T PRK14573 4 SLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKG-------ARFFLGHQEEHVPE---DAVVVYSSSI 73 (809)
T ss_pred cceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCC-------CEEeCCCCHHHcCC---CCEEEECCCc
Confidence 4569999999999987 9999999999999997643 233343322 3332 122233333 89888753
Q ss_pred CCCc-hHHHHH---------HHHhhhcCC--CCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 78 KAGS-PVDQTI---------KTLSVYMEK--GDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 78 p~~~-~v~~vl---------~~l~~~l~~--g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
|... .+.... -+++..+.+ ..|-|-.|+++-.++.-+...|...|.
T Consensus 74 ~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 74 SKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 3321 122211 122222222 245566677766566666777777664
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.071 Score=52.49 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=46.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhc------CC-CcEEEE
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSI------QK-PRVIIM 75 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l------~~-advIi~ 75 (484)
+|.|+|. |.+|+.++..|.+.|++|.+..|++++.... +.. .+. -..+++.+...+ +. +|.+++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~---~~~----~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~ 73 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGP---NEK----HVKFDWLDEDTWDNPFSSDDGMEPEISAVYL 73 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCC---CCc----cccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence 4788886 9999999999999999999999998754211 100 011 123444443333 45 799988
Q ss_pred ecCCC
Q 011501 76 LVKAG 80 (484)
Q Consensus 76 ~vp~~ 80 (484)
+.|..
T Consensus 74 ~~~~~ 78 (285)
T TIGR03649 74 VAPPI 78 (285)
T ss_pred eCCCC
Confidence 87753
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.1 Score=52.72 Aligned_cols=100 Identities=16% Similarity=0.168 Sum_probs=58.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-------CcEEEEeCChh--HHHHHHHHhhh---cCCCCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-------FPISVYNRTTS--KVDETVERAKQ---EGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-------~~V~v~dr~~~--~~~~~~~~~~~---~~~~~~~~~~s~~e~~~~l~~ 69 (484)
+.||+|+|+ |.+|..++..|...+ .+|.++|+++. +.+........ ...-.+....++.+.++.
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~--- 78 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKD--- 78 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCC---
Confidence 358999999 999999999999854 58999999653 12211100000 000012233444444454
Q ss_pred CcEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ .. ++++...+..+..++.++|-.||
T Consensus 79 aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 79 VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 99999876332 11 12333455555555667777775
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.13 Score=50.23 Aligned_cols=83 Identities=13% Similarity=0.221 Sum_probs=54.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|..++|-|.|. |.+|..++..|++.|++|++.+|++++.+++... . ...+..-+.+
T Consensus 1 ~~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~--------------------~---~~~~~~Dv~~ 57 (273)
T PRK06182 1 MQKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL--------------------G---VHPLSLDVTD 57 (273)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC--------------------C---CeEEEeeCCC
Confidence 55567888885 8999999999999999999999998776543321 0 2233333344
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.++.+++.+.....+=+++|++...
T Consensus 58 ~~~~~~~~~~~~~~~~~id~li~~ag~ 84 (273)
T PRK06182 58 EASIKAAVDTIIAEEGRIDVLVNNAGY 84 (273)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 445555565555443334666666543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.1 Score=50.07 Aligned_cols=87 Identities=14% Similarity=0.170 Sum_probs=56.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+...... .. .+..++..-+.+..
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~----------------~~-~~~~~~~~Dl~~~~ 66 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQK----------------AG-GKAIGVAMDVTDEE 66 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHh----------------cC-CcEEEEEcCCCCHH
Confidence 35688887 69999999999999999999999998877665543210 00 00223333334444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++++.....+-++||++...
T Consensus 67 ~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 67 AINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5566666665555455777776543
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.061 Score=53.15 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=56.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++.... .++.+.+++ ||+||.++.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~nl~~~~~~---ADIvIsAvG 213 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------------KNLKKECLE---ADIIIAALG 213 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 579999965 5899999999988 56888886432 245566666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+..+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~vk~gavVIDvGin~ 236 (293)
T PRK14185 214 QPEFVK------ADMVKEGAVVIDVGTTR 236 (293)
T ss_pred CcCccC------HHHcCCCCEEEEecCcc
Confidence 875433 24688999999998764
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.03 Score=55.90 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=58.5
Q ss_pred HHHHHHHhhcc-CcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 217 ELQQVFSEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 217 ~i~~~~~~~~~-g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
++.++++.|+. +.++|++++...+.+..+ ++ .+.++...||+ ++..|+++.|.+.|+|+|++..+++.++.+.
T Consensus 201 d~~~~~~~~~~~~~~~s~~l~~~~~~~~~~-~~--~~~l~~~~KD~---~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~ 274 (299)
T PRK12490 201 DVEDVARLWRNGSVIRSWLLDLTVKALAED-PK--LAGIKGYVNDS---GEGRWTVEEAIELAVAAPVIAASLFMRFASQ 274 (299)
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHhhC-CC--hhhhhHHHHhc---CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 57788888986 458999999888877643 22 24667777774 3456999999999999999998877888887
Q ss_pred Cc
Q 011501 296 LK 297 (484)
Q Consensus 296 ~~ 297 (484)
.+
T Consensus 275 ~~ 276 (299)
T PRK12490 275 ED 276 (299)
T ss_pred cc
Confidence 66
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.072 Score=59.00 Aligned_cols=124 Identities=14% Similarity=0.173 Sum_probs=72.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|-+|+.++.+|++.|. +++++|.+.=....+..+... ....+..-+.-..+.+..+ .+++-|.+.+..-
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~i-nP~~~I~~~~~~i 122 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSI-NPFLEITPFPAGI 122 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHh-CCCCeEEEEecCC
Confidence 589999999999999999999997 688888765433333322100 0000000011122222222 2566666665542
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+-+..+ +..-++|||+..... ..-..+.+.+.+.++-++.+++.|
T Consensus 123 ~-~~n~~~~---l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 123 N-ADNMDAF---LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred C-hHHHHHH---HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 2 2223333 345589999987642 233345666777899898877654
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.3 Score=48.42 Aligned_cols=105 Identities=13% Similarity=0.133 Sum_probs=76.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.++|.+....+.+++|++.+.++ +++|..++.++.+.+ ..+|++++...+.+... +.. +
T Consensus 162 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gid~~~~~~~l~~~-~~~s~~~~~~~~~~~~~-~~~-----~ 228 (291)
T TIGR01505 162 NGDGQTCKVANQIIVALNIEAVSEALVFASK------AGVDPVRVRQALRGG-LAGSTVLEVKGERVIDR-TFK-----P 228 (291)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcC-cccCHHHHhhChhhhcC-CCC-----C
Confidence 3678899999999999999999999999774 459999999999876 45777776554333222 111 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
-|.- .-....++.+...|-+.|+|.|...++..+|...
T Consensus 229 ~f~~--~~~~KDl~~~~~~a~~~g~~~~~~~~~~~~~~~a 266 (291)
T TIGR01505 229 GFRI--DLHQKDLNLALDSAKAVGANLPNTATVQELFNTL 266 (291)
T ss_pred Ccch--HHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Confidence 1221 1223456788889999999999999998866543
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.19 Score=52.69 Aligned_cols=118 Identities=13% Similarity=0.091 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEE--------Ee---CChhHHHHHHHHhhhcC--------CC-CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISV--------YN---RTTSKVDETVERAKQEG--------NL-PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~d---r~~~~~~~~~~~~~~~~--------~~-~~~~~~s~~e~ 63 (484)
.+|+|=|+|++|...|+.|.+.|.+|.+ || .+.++++.+.+.....+ ++ +.+.. +.+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i-~~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF-AGKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc-CCccc
Confidence 5899999999999999999999999988 88 67666544433221110 00 11111 23343
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .||+.+-|--.+.-..+.++.|... +=++|+...|. | .+.+..+.|.++|+.|+..
T Consensus 308 ~~~--~cDVliPcAl~n~I~~~na~~l~~~--~ak~V~EgAN~-p-~t~eA~~iL~~rGI~~vPD 366 (445)
T PRK14030 308 WEQ--KVDIALPCATQNELNGEDADKLIKN--GVLCVAEVSNM-G-CTAEAIDKFIAAKQLFAPG 366 (445)
T ss_pred eec--cccEEeeccccccCCHHHHHHHHHc--CCeEEEeCCCC-C-CCHHHHHHHHHCCCEEeCc
Confidence 332 4888887765543333333444221 34688888888 4 5556678889999988753
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.28 Score=51.96 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=30.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
||.|||+|..|.+.|+.|++.|++|.++|+++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence 799999999999999999999999999997654
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.13 Score=51.94 Aligned_cols=39 Identities=13% Similarity=0.305 Sum_probs=29.3
Q ss_pred EEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHH
Q 011501 6 IGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVE 44 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~ 44 (484)
|||+|+|.+|...++.+.+. +.+|. +.|.+++....+..
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~ 41 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAK 41 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHH
Confidence 69999999999999998754 45654 56777776555554
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.22 Score=48.08 Aligned_cols=115 Identities=17% Similarity=0.178 Sum_probs=65.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-Cc-EEEEeCChhHH-----HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-FP-ISVYNRTTSKV-----DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-~~-V~v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
++||+|+|+ |+||+.+.+.+.+.. ++ +..++|.+... .++...+ .+++...+++...... +|++|
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~----~~gv~v~~~~~~~~~~---~DV~I 74 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLG----LLGVPVTDDLLLVKAD---ADVLI 74 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhcccc----ccCceeecchhhcccC---CCEEE
Confidence 579999998 999999999999775 44 45678876532 1121111 1134445554444444 89988
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
=-+.+. .+...++-.+ ..+..+|-.+|...+.-.+..+.+.++ +..+-+|
T Consensus 75 DFT~P~-~~~~~l~~~~---~~~~~lVIGTTGf~~e~~~~l~~~a~~-v~vv~a~ 124 (266)
T COG0289 75 DFTTPE-ATLENLEFAL---EHGKPLVIGTTGFTEEQLEKLREAAEK-VPVVIAP 124 (266)
T ss_pred ECCCch-hhHHHHHHHH---HcCCCeEEECCCCCHHHHHHHHHHHhh-CCEEEec
Confidence 655432 4444444333 344555556666544444444444443 4334444
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.11 Score=47.96 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=46.6
Q ss_pred eEEEEcccHHHHHHH--HHHHhC----CCcEEEEeCChhHHHHHH---HHhhhcC--CCCeeecCCHhHHHhhcCCCcEE
Q 011501 5 RIGLAGLAVMGQNLA--LNIAEK----GFPISVYNRTTSKVDETV---ERAKQEG--NLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA--~~L~~~----G~~V~v~dr~~~~~~~~~---~~~~~~~--~~~~~~~~s~~e~~~~l~~advI 73 (484)
||+|||.|..-.+.- ..+... +-++..+|+++++++... +...+.. ..++..++|.+++++. +|+|
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~g---ADfV 77 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEG---ADFV 77 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTT---ESEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCC---CCEE
Confidence 799999999766532 223322 347999999999876432 2221111 2256778999999987 9999
Q ss_pred EEecCCC
Q 011501 74 IMLVKAG 80 (484)
Q Consensus 74 i~~vp~~ 80 (484)
|.++-.+
T Consensus 78 i~~irvG 84 (183)
T PF02056_consen 78 INQIRVG 84 (183)
T ss_dssp EE---TT
T ss_pred EEEeeec
Confidence 9998654
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.051 Score=55.32 Aligned_cols=90 Identities=12% Similarity=0.275 Sum_probs=55.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCc---EEEE--eCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFP---ISVY--NRTTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~---V~v~--dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~ 75 (484)
.+||+|||. |..|..+.+.|.+.+|. +... .|+..+.-.+ .+ . .+.... +.++ ++. +|+||+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~--~~-~----~~~v~~~~~~~-~~~---~D~vf~ 75 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF--EG-R----DYTVEELTEDS-FDG---VDIALF 75 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee--cC-c----eeEEEeCCHHH-HcC---CCEEEE
Confidence 468999985 99999999999998873 3222 3333322111 11 1 122221 2233 344 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+|++ ...+....+ ...|..|||.|+..
T Consensus 76 a~p~~-~s~~~~~~~---~~~g~~VIDlS~~f 103 (344)
T PLN02383 76 SAGGS-ISKKFGPIA---VDKGAVVVDNSSAF 103 (344)
T ss_pred CCCcH-HHHHHHHHH---HhCCCEEEECCchh
Confidence 99987 444444433 24688999999764
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.16 Score=50.33 Aligned_cols=109 Identities=14% Similarity=0.046 Sum_probs=73.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHH---HccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKA---YDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~---~~~~~~~~~ll 397 (484)
.++++.+|+++|.+.++.++.++|++.+.++ .++|..++.++.+.+. -+|+.+...... ........+
T Consensus 159 ~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~------~Gld~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~-- 229 (288)
T TIGR01692 159 HGAGQAAKICNNMLLGISMIGTAEAMALGEK------LGLDPKVLFEIANTSS-GRCWSSDTYNPVPGVMPQAPASNG-- 229 (288)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhcCC-ccCcHHHHhCCCccccccccccCC--
Confidence 3788999999999999999999999998775 3499999999998763 356654422110 000000000
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
.++-|. +.-...+++.+...|-+.|+|+|....+...|...
T Consensus 230 ~~~~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a 270 (288)
T TIGR01692 230 YQGGFG--TALMLKDLGLAQDAAKSAGAPTPLGALARQLYSLF 270 (288)
T ss_pred CCCCcc--hHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 012221 22334566888999999999999998888766543
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.069 Score=59.41 Aligned_cols=124 Identities=14% Similarity=0.199 Sum_probs=73.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+| +|+..|..|++.|. +++++|.+.=....+..........+..-+...++-+..+ .+++-|.+++..-
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~i-np~i~v~~~~~~i 185 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAEL-DPYLPVEVFTDGL 185 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999 89999999999994 8888887653333333211000000000111222222222 2677777776652
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
..+.++++. ..-++||||+-.. ..-..+.+.+.++++-++.+...+|.
T Consensus 186 -~~~n~~~~l---~~~DlVvD~~D~~-~~R~~ln~~a~~~~iP~i~~~~~~g~ 233 (722)
T PRK07877 186 -TEDNVDAFL---DGLDVVVEECDSL-DVKVLLREAARARRIPVLMATSDRGL 233 (722)
T ss_pred -CHHHHHHHh---cCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEcCCCCC
Confidence 233444444 3458999998875 33334556677788888877655443
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.11 Score=50.07 Aligned_cols=84 Identities=14% Similarity=0.255 Sum_probs=55.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE--EecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII--MLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi--~~vp~~ 80 (484)
+++-|.|. |.+|..++..|+++|++|.+.+|++++.+++.+..... . +++.+ .-+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~~~ 68 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA----------------G---GKAIGVAMDVTNE 68 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc----------------C---ceEEEEECCCCCH
Confidence 45778876 99999999999999999999999988776655432110 0 22222 222333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..++++++++.....+-+.+|++...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 69 DAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 44555666655544455778887654
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.22 Score=52.62 Aligned_cols=109 Identities=13% Similarity=0.199 Sum_probs=64.6
Q ss_pred eEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEec--CC
Q 011501 5 RIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 5 ~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~v--p~ 79 (484)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+... .+.+.+.+ +.... ...+.++. +|+||.+- |.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~~~~---~d~vV~spgi~~ 70 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALG-------IPIYIGHSAENLDD---ADVVVVSAAIKD 70 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCc-------CEEeCCCCHHHCCC---CCEEEECCCCCC
Confidence 4789999999998 999999999999999976543 22333221 33322 11223333 89888753 33
Q ss_pred Cc-hHHHHH---------HHHh-hhcC-CCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 80 GS-PVDQTI---------KTLS-VYME-KGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 80 ~~-~v~~vl---------~~l~-~~l~-~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+. .+.... -+++ ..++ ...+-|-.|+++-.++.-+...+...|.
T Consensus 71 ~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 71 DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 22 222221 1222 2222 2345566677776666666777777775
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.089 Score=54.65 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..+|.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+.+.+..-
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~-np~v~i~~~~~~i 121 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEI-NPLVNVRLHEFRL 121 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHh-CCCcEEEEEeccC
Confidence 589999999999999999999998 78899877543333332210 00000000011112222222 2566665554331
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
..+ -+.+ .+..=++|||++... ..-..+.+.+...++.|+.+.+.|-
T Consensus 122 ~~~-~~~~---~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 168 (392)
T PRK07878 122 DPS-NAVE---LFSQYDLILDGTDNF-ATRYLVNDAAVLAGKPYVWGSIYRF 168 (392)
T ss_pred Chh-HHHH---HHhcCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEeccC
Confidence 111 1222 234458999987653 4444456666778888888766543
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.028 Score=58.07 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=33.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+.++|.|||.|..|..+|..|+++|++|+++++.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4557899999999999999999999999999998864
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.14 Score=50.09 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~-----------------~~---~~~~~~D~~d~~ 63 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHP-----------------DR---ALARLLDVTDFD 63 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC-----------------CC---eeEEEccCCCHH
Confidence 356888875 899999999999999999999999887655443210 00 122222333444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+...++++.....+=++||++...
T Consensus 64 ~~~~~~~~~~~~~~~~d~vv~~ag~ 88 (277)
T PRK06180 64 AIDAVVADAEATFGPIDVLVNNAGY 88 (277)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCc
Confidence 5555555555444334677776544
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.08 Score=52.46 Aligned_cols=74 Identities=14% Similarity=0.293 Sum_probs=56.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|.|||- ..+|.++|..|.++ +..|+++... +.++++.+++ ||+||.++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~---------------------T~~l~~~~~~---ADIvVsAvG 217 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR---------------------SKNLARHCQR---ADILIVAAG 217 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC---------------------CcCHHHHHhh---CCEEEEecC
Confidence 57999996 55899999999988 6789987543 1245566666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-+..+. ..++++|.+|||.+...
T Consensus 218 kp~~i~------~~~ik~gavVIDvGin~ 240 (297)
T PRK14168 218 VPNLVK------PEWIKPGATVIDVGVNR 240 (297)
T ss_pred CcCccC------HHHcCCCCEEEecCCCc
Confidence 764322 24688999999998654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.13 Score=50.48 Aligned_cols=103 Identities=10% Similarity=0.124 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcC--CCCeee-cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEG--NLPLYG-FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~--~~~~~~-~~s~~e~~~~l~~advIi~~vp 78 (484)
.+|.|||.|.+-...-.....+ |..|..+|++++..+...+...... +.++.. +.+..++...+...|+|+++--
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAal 201 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAAL 201 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-TT
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhhh
Confidence 4899999999876654433333 4568899999987665433222000 002333 3344444445556899999875
Q ss_pred CC---chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AG---SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~---~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+ ..-..+++.+...+++|..|+--+..
T Consensus 202 Vg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 202 VGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp -S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred cccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 54 24568889999999999988876543
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.091 Score=59.75 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|-+|+.++.+|+..|. ++++.|-+.=....+..+.. .....+..-+....+.+..+ .+++=|.+.+..
T Consensus 333 srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~I-NP~v~I~~~~~~- 410 (989)
T PRK14852 333 SRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSV-NPFLDIRSFPEG- 410 (989)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHH-CCCCeEEEEecC-
Confidence 589999999999999999999997 68888876544333433210 00000001111222333322 267777777654
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHH-HHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENT-ERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~-~~~~~~l~~~g~~~i~~pv~gg 133 (484)
...+.++++. ..=++|||+......++ ..+.+.+.+.++-++.+.+.|-
T Consensus 411 I~~en~~~fl---~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~ 460 (989)
T PRK14852 411 VAAETIDAFL---KDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGY 460 (989)
T ss_pred CCHHHHHHHh---hCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeecccc
Confidence 2233344443 34589999887643333 3455566778998988876543
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.3 Score=48.68 Aligned_cols=103 Identities=14% Similarity=0.084 Sum_probs=73.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHH-HH-HHHccCCCCCCccc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDR-IK-KAYDRNPDLANVLV 398 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~-i~-~~~~~~~~~~~ll~ 398 (484)
.++++.+|.+.|-+..+.+..++|++.+.++. + +|...+.++.+.+. ..+..+.. .. .++..+ .
T Consensus 164 ~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~----G--ld~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~----- 229 (296)
T PRK15461 164 PGMGIRVKLINNYMSIALNALSAEAAVLCEAL----G--LSFDVALKVMSGTA-AGKGHFTTTWPNKVLKGD--L----- 229 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHhcCc-ccChHHHccccchhccCC--C-----
Confidence 47889999999999999999999999998753 3 99999999988663 33433322 21 122111 1
Q ss_pred chhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 399 DPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
++-| .++-...+++-+...|-+.|+|+|....+...|..
T Consensus 230 ~~~f--~~~~~~KD~~l~~~~a~~~g~~~p~~~~~~~~~~~ 268 (296)
T PRK15461 230 SPAF--MIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQ 268 (296)
T ss_pred CCCc--chHHHHhhHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1223 23334556788889999999999999988886654
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.19 Score=48.59 Aligned_cols=118 Identities=15% Similarity=0.278 Sum_probs=70.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEE--------EeCChhHHHHHHHHhhhcCCCCeeecC----------CH-hHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISV--------YNRTTSKVDETVERAKQEGNLPLYGFH----------DP-ESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v--------~dr~~~~~~~~~~~~~~~~~~~~~~~~----------s~-~e~ 63 (484)
-+++.|-|.|.+|...|+.|.+.|.+|.+ ||.+.-.++++.+.....+. .+.... +. +++
T Consensus 32 g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~i 110 (244)
T PF00208_consen 32 GKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGS-RVDDYPLESPDGAEYIPNDDEI 110 (244)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSS-HSTTGTHTCSSTSEEECHHCHG
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCC-cccccccccccceeEecccccc
Confidence 36899999999999999999999987664 46665555555543221110 011111 22 244
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .+|+++-|--.+.-..+.+.. .+++ -++|+...|.... .+..+.|.++|+.++..
T Consensus 111 l~~--~~DiliP~A~~~~I~~~~~~~---~i~~~akiIvegAN~p~t--~~a~~~L~~rGI~viPD 169 (244)
T PF00208_consen 111 LSV--DCDILIPCALGNVINEDNAPS---LIKSGAKIIVEGANGPLT--PEADEILRERGILVIPD 169 (244)
T ss_dssp GTS--SSSEEEEESSSTSBSCHHHCH---CHHTT-SEEEESSSSSBS--HHHHHHHHHTT-EEE-H
T ss_pred ccc--cccEEEEcCCCCeeCHHHHHH---HHhccCcEEEeCcchhcc--HHHHHHHHHCCCEEEcc
Confidence 432 499999996454333333331 2222 3688888887643 33345889999988754
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.67 Score=50.16 Aligned_cols=76 Identities=21% Similarity=0.305 Sum_probs=50.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-----cCC---CCeee----cCCHhHHHhhcCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-----EGN---LPLYG----FHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-----~~~---~~~~~----~~s~~e~~~~l~~a 70 (484)
+.|.|.|. |.+|..+++.|++.|++|.+++|+.++.+.+.+.... .+. .++.. ..+.+++.+.+.++
T Consensus 81 KvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggi 160 (576)
T PLN03209 81 DLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNA 160 (576)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCC
Confidence 35777875 9999999999999999999999999887665442110 000 01111 23444555555669
Q ss_pred cEEEEecCC
Q 011501 71 RVIIMLVKA 79 (484)
Q Consensus 71 dvIi~~vp~ 79 (484)
|+||.+...
T Consensus 161 DiVVn~AG~ 169 (576)
T PLN03209 161 SVVICCIGA 169 (576)
T ss_pred CEEEEcccc
Confidence 999988643
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.095 Score=51.96 Aligned_cols=74 Identities=16% Similarity=0.303 Sum_probs=56.3
Q ss_pred CeEEEEccc-HHHHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.++ +..|+++.... .++++..++ ||+||.++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------~~l~~~~~~---ADIvIsAvG 213 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---------------------DDLAAKTRR---ADIVVAAAG 213 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---------------------CCHHHHHhh---CCEEEEccC
Confidence 579999964 5899999999987 78899885431 245566666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-+.-+. ..++++|.+|||.+...
T Consensus 214 kp~~i~------~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 214 VPELID------GSMLSEGATVIDVGINR 236 (297)
T ss_pred CcCccC------HHHcCCCCEEEEccccc
Confidence 764322 24688999999998664
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.043 Score=55.59 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=56.3
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 2 VQTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 2 ~~~~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
..++|+|||. |..|.-|.+.|.++.| ++..+..+...-+.+.-.+. .+... ++++.. ++.+|++|+|+
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~-----~~~v~-~~~~~~--~~~~Dvvf~a~ 74 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK-----SVTVQ-DAAEFD--WSQAQLAFFVA 74 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc-----ceEEE-eCchhh--ccCCCEEEECC
Confidence 3579999996 9999999999998544 45444332211111110010 12222 344332 12389999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|.+ ...++...+. ..|..|||.|+..
T Consensus 75 p~~-~s~~~~~~~~---~~g~~VIDlS~~f 100 (336)
T PRK08040 75 GRE-ASAAYAEEAT---NAGCLVIDSSGLF 100 (336)
T ss_pred CHH-HHHHHHHHHH---HCCCEEEECChHh
Confidence 987 4444444432 4689999999764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.082 Score=53.41 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=28.4
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~ 37 (484)
+|+|||+ |.+|..+|..|+..+. ++.++|+++.
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 6999999 9999999999997654 5999999654
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.038 Score=56.19 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=55.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEE---EEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCC
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPIS---VYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~---v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~ 79 (484)
+|+||| .|..|..|.+.|.+++|++. .+.++.+.-+.+.-.+. .+... .+.+++ +. +|++|+|+|.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~-----~~~~~~~~~~~~-~~---~D~v~~a~g~ 71 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGK-----ELEVNEAKIESF-EG---IDIALFSAGG 71 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCe-----eEEEEeCChHHh-cC---CCEEEECCCH
Confidence 589999 69999999999999888643 44444332222211111 12221 122333 33 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ...+....+ +..|..|||.|+..
T Consensus 72 ~-~s~~~a~~~---~~~G~~VID~ss~~ 95 (339)
T TIGR01296 72 S-VSKEFAPKA---AKCGAIVIDNTSAF 95 (339)
T ss_pred H-HHHHHHHHH---HHCCCEEEECCHHH
Confidence 7 444444443 34678999998753
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.16 Score=48.12 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=35.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA 48 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHH
Confidence 46888874 999999999999999999999999877666544
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.24 Score=47.77 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=35.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|..++|-|+|. |.+|..+++.|+++|++|.+.+|++.+.+...
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 33467889987 99999999999999999999999977655543
|
|
| >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.2 Score=52.05 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=52.4
Q ss_pred CCCCeEEEEcccHHHHHHHH-H-HHh----CCCcEEEEeCChhHHHHHH---HHhhh-cC-CCCeeecCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAGLAVMGQNLAL-N-IAE----KGFPISVYNRTTSKVDETV---ERAKQ-EG-NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~-~-L~~----~G~~V~v~dr~~~~~~~~~---~~~~~-~~-~~~~~~~~s~~e~~~~l~~ 69 (484)
|++.||+|||.|..+.+.-. . |.+ .+.++..||.++++.+... +...+ .+ ..++..++|.+++++.
T Consensus 1 m~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~g--- 77 (442)
T COG1486 1 MKKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEG--- 77 (442)
T ss_pred CCcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcC---
Confidence 66779999999998766422 2 222 2458999999998866321 11111 10 1257788999999888
Q ss_pred CcEEEEecCCC
Q 011501 70 PRVIIMLVKAG 80 (484)
Q Consensus 70 advIi~~vp~~ 80 (484)
+|+|+.++-.+
T Consensus 78 AdfVi~~~rvG 88 (442)
T COG1486 78 ADFVITQIRVG 88 (442)
T ss_pred CCEEEEEEeeC
Confidence 99999998544
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.23 Score=52.82 Aligned_cols=115 Identities=13% Similarity=0.203 Sum_probs=74.4
Q ss_pred CeEEEEcc----------cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh--------c------CCC--Ceeec
Q 011501 4 TRIGLAGL----------AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ--------E------GNL--PLYGF 57 (484)
Q Consensus 4 ~~IgiIGl----------G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~--------~------~~~--~~~~~ 57 (484)
++|+|+|+ ..-...++..|.+.|.+|.+||.--+..+. .+.... . .+. .+..+
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQI-QRDLSMNKFDWDHPRHLQPMSPTAVKQVSVV 403 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHH-HHHhhcccccccccccccccccccccceeee
Confidence 58999998 346788999999999999999986433211 111100 0 000 13556
Q ss_pred CCHhHHHhhcCCCcEEEEecCCCchHHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 58 HDPESFVHSIQKPRVIIMLVKAGSPVDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 58 ~s~~e~~~~l~~advIi~~vp~~~~v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.++.+.++. +|+||+++..+ ..+.. .+.+...+.+..+|+|+-+.... +.+++.|+.|++.+
T Consensus 404 ~~~~~a~~~---aD~vvi~t~~~-ef~~l~~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~~G 466 (473)
T PLN02353 404 WDAYEATKG---AHGICILTEWD-EFKTLDYQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYSIG 466 (473)
T ss_pred CCHHHHhcC---CCEEEECCCCh-HhcccCHHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEEeC
Confidence 677777776 99999999886 34432 34555555555589999988742 22335588887754
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.096 Score=53.36 Aligned_cols=97 Identities=13% Similarity=0.159 Sum_probs=55.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCC-CcEEEE-eCChhHHHHHHHHhhh-----cCC-C-CeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKG-FPISVY-NRTTSKVDETVERAKQ-----EGN-L-PLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G-~~V~v~-dr~~~~~~~~~~~~~~-----~~~-~-~~~~~~s~~e~~~~l~~advI 73 (484)
+||+|+|. |.||..+++.|.++. +++... +++.+..+.+...... ..+ + .+.......+... ++|+|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~DvV 77 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASK---DVDIV 77 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhc---cCCEE
Confidence 48999995 999999999998876 476655 5543322222211100 000 0 0111111112223 49999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|+|.+ ....+...+ ...|..|||.|...
T Consensus 78 f~a~p~~-~s~~~~~~~---~~~G~~VIDlsg~f 107 (341)
T TIGR00978 78 FSALPSE-VAEEVEPKL---AEAGKPVFSNASNH 107 (341)
T ss_pred EEeCCHH-HHHHHHHHH---HHCCCEEEECChhh
Confidence 9999987 333444333 34688899998764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.17 Score=48.16 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=34.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAA 48 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4677887 4999999999999999999999999877665543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.28 Score=46.38 Aligned_cols=84 Identities=11% Similarity=0.191 Sum_probs=54.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++..+..+.... .. ..++..-+.+...
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~D~~~~~~ 68 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA----------------DA---LRIGGIDLVDPQA 68 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh----------------cC---ceEEEeecCCHHH
Confidence 46888874 9999999999999999999999998765544332110 01 2344444444455
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+..+++++.....+-+.|++....
T Consensus 69 ~~~~~~~~~~~~~~~d~vi~~ag~ 92 (239)
T PRK12828 69 ARRAVDEVNRQFGRLDALVNIAGA 92 (239)
T ss_pred HHHHHHHHHHHhCCcCEEEECCcc
Confidence 666666665544444677776543
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.23 Score=47.75 Aligned_cols=40 Identities=15% Similarity=0.269 Sum_probs=34.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|+|-|+|. |.+|..++..|+++|++|.+.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 47888884 89999999999999999999999988765544
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.22 Score=51.04 Aligned_cols=119 Identities=10% Similarity=0.104 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh-h-hcCCCCe--eecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA-K-QEGNLPL--YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~-~-~~~~~~~--~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+|+|||+|-.|+.++..|++.|. +++++|.+.=....+..+. . .....+. .-+...++.+..+ .+++. +.+
T Consensus 177 ~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i-n~~I~--~~~ 253 (393)
T PRK06153 177 QRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM-RRGIV--PHP 253 (393)
T ss_pred CcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh-CCeEE--EEe
Confidence 589999999999999999999997 7888887643222222211 0 0000000 0011122222222 13443 333
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
.. ...+.+. .+..-++|++|.-... .-..+.+.+.+.++-|+++++.
T Consensus 254 ~~-I~~~n~~----~L~~~DiV~dcvDn~~-aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 254 EY-IDEDNVD----ELDGFTFVFVCVDKGS-SRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred ec-CCHHHHH----HhcCCCEEEEcCCCHH-HHHHHHHHHHHcCCCEEEeeec
Confidence 22 1112222 3445689999887643 2233456667789999987643
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.19 Score=48.03 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=55.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|+++..+.+.+..... ... ...+..-+.+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~~~~~ 69 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--------------GGT---AIAVQVDVSDPDS 69 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEcCCCCHHH
Confidence 56888886 99999999999999999999999987665544322110 000 1222223334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=++||++...
T Consensus 70 ~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 70 AKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 566666665555445788887664
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.5 Score=44.61 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=51.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||.|..|..=++.|++.|-+|+++..+. +....+...+.-. -+...-+++++. .+++||.++++. .
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~---~~~~~~~~~~~~----~~~lviaAt~d~-~ 84 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIK---WIEREFDAEDLD----DAFLVIAATDDE-E 84 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcc---hhhcccChhhhc----CceEEEEeCCCH-H
Confidence 579999999999999999999999999998776 4444544433200 011122333333 389999999876 4
Q ss_pred HHHHH
Q 011501 83 VDQTI 87 (484)
Q Consensus 83 v~~vl 87 (484)
+.+-+
T Consensus 85 ln~~i 89 (210)
T COG1648 85 LNERI 89 (210)
T ss_pred HHHHH
Confidence 55444
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.11 Score=50.16 Aligned_cols=40 Identities=20% Similarity=0.340 Sum_probs=34.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
+++|.|+| .|.+|..++..|+++|++|++..|++++....
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 46899999 59999999999999999999999998775543
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.16 Score=48.94 Aligned_cols=115 Identities=10% Similarity=0.095 Sum_probs=80.1
Q ss_pred EEEEcccHHHHHHHHHHHhCC---CcEEEEeCChhHHHHHHHHhhhcC-C--CCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 6 IGLAGLAVMGQNLALNIAEKG---FPISVYNRTTSKVDETVERAKQEG-N--LPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G---~~V~v~dr~~~~~~~~~~~~~~~~-~--~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
..++|.|.....+-....+.- .+|.+|+|+++...++.+...+.. . ..+..+.+.++++.. +|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~---sDIIs~atls 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSN---SDIISGATLS 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhccccc---CceEEecccc
Confidence 678999999988776655432 389999999999888877543321 0 024567788888887 9999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...+- ..++++||+- ||.-.+.-+...+....+-+.+..|+|..
T Consensus 218 tePil-----fgewlkpgth-IdlVGsf~p~mhEcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 218 TEPIL-----FGEWLKPGTH-IDLVGSFKPVMHECDDELIQSACVFVDSR 261 (333)
T ss_pred CCcee-----eeeeecCCce-EeeeccCCchHHHHhHHHhhhheEEEecc
Confidence 64321 2356778854 45544444566677777777788898874
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.19 Score=48.29 Aligned_cols=88 Identities=13% Similarity=0.160 Sum_probs=55.8
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+.++|-|.| .|.+|..+|..|+++|++|.+.+|+++..+.+.+..... -.. ...+..-+.+.
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL--------------GRR---ALAVPTDITDE 66 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh--------------CCc---eEEEecCCCCH
Confidence 345777887 589999999999999999999999987766554432110 000 22333333444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+.||++...
T Consensus 67 ~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 67 DQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHHHHHHHHHcCCccEEEECCcc
Confidence 45666666665544444677776543
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.21 Score=49.53 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+|..|+++|++|++.+|+.++.+++.+..... ... ...+-.-+.+.+.
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~--------------~~~---~~~~~~Dl~d~~~ 103 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA--------------GGD---AMAVPCDLSDLDA 103 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------CCc---EEEEEccCCCHHH
Confidence 46778875 99999999999999999999999988776655432110 000 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 104 v~~~~~~~~~~~g~id~li~~AG~ 127 (293)
T PRK05866 104 VDALVADVEKRIGGVDILINNAGR 127 (293)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 566666665544444777776543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.2 Score=50.79 Aligned_cols=38 Identities=16% Similarity=0.397 Sum_probs=32.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCcEEEEeCChhHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-GFPISVYNRTTSKVDE 41 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~ 41 (484)
|+|.|.|. |.+|+.++..|+++ |++|.+.+|+.++...
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~ 41 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGD 41 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHH
Confidence 58999996 99999999999986 7999999998765443
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.042 Score=57.23 Aligned_cols=33 Identities=24% Similarity=0.637 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.+.|..|++.|++|+++|+++
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999875
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.48 Score=50.45 Aligned_cols=33 Identities=12% Similarity=0.009 Sum_probs=30.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++|+|+|+|.-|.+.|+.|.+.|.+|+++|.++
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~ 41 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCN 41 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCC
Confidence 589999999999999999999999999999543
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.24 Score=52.06 Aligned_cols=74 Identities=14% Similarity=0.219 Sum_probs=50.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHH---Hhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETVE---RAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~~~~---~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||.|.. +-.+...|+.. +-+|..+|.++++.+.... +..+. + ..++..++|.+++++. ||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~g---ADf 77 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTD---ADF 77 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCC---CCE
Confidence 58999999985 22344444433 3589999999987655322 11111 1 2257788899998887 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||..+-.+
T Consensus 78 Vi~~irvG 85 (437)
T cd05298 78 VFAQIRVG 85 (437)
T ss_pred EEEEeeeC
Confidence 99998665
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.14 Score=50.67 Aligned_cols=120 Identities=11% Similarity=0.185 Sum_probs=69.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|+|+|-+|..+|++|+.+|. +++++|.+.-....+..+-- .+...+-.-+....+-++++. +++-|......
T Consensus 19 ~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLN-p~V~V~~~~~~ 97 (286)
T cd01491 19 KSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELN-PYVPVTVSTGP 97 (286)
T ss_pred cCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHC-CCCEEEEEecc
Confidence 4689999999999999999999997 69999977644433322100 000000000111112222222 55555555432
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
...+ .+.+=++||++.. .+....++.+.+.+.++.|+.+...|
T Consensus 98 -~~~~-------~l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 98 -LTTD-------ELLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred -CCHH-------HHhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1111 1233468888754 55666667778888899888876543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.21 Score=48.91 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=35.4
Q ss_pred CCC-CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQ-TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~-~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|.+ ++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 1 m~~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~ 45 (277)
T PRK05993 1 MDMKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE 45 (277)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 543 35777776 99999999999999999999999988765543
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.2 Score=49.95 Aligned_cols=108 Identities=16% Similarity=0.046 Sum_probs=74.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
.+|+|||--.=-..++..|.+.|++|.++.-+.+.. ... ++..+++.+++++. +|+|+..+|....
T Consensus 3 ~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~-------g~~~~~~~~~~~~~---ad~ii~~~p~~~~~ 69 (296)
T PRK08306 3 KHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFT-------GATKSSSLEEALSD---VDVIILPVPGTNDE 69 (296)
T ss_pred cEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccC-------CceeeccHHHHhcc---CCEEEECCccccCC
Confidence 589999999989999999999999999976553211 111 25667778887776 9999999886311
Q ss_pred --HHHH-------H-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 --VDQT-------I-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 --v~~v-------l-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+... + .+++..++++.+++ .+...|.. .+.+.++|+..++.+
T Consensus 70 ~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~----~~~~~~~gi~~~~~~ 121 (296)
T PRK08306 70 GNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANPYL----KELAKETNRKLVELF 121 (296)
T ss_pred ceeeccccccCCcchHHHHHhcCCCCEEE-EecCCHHH----HHHHHHCCCeEEEEe
Confidence 1111 1 35667788897555 45555442 244668899888654
|
|
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.24 Score=47.84 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-----------CcEEEEeCCh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-----------FPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-----------~~V~v~dr~~ 36 (484)
..+|.|||+|..|+.++.+|++.| .+++++|.+.
T Consensus 11 ~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 11 PVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred CCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 358999999999999999999874 2889998764
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.045 Score=56.63 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=33.4
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+ .++|.|||.|..|..+|..|+++|++|+++++++.
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 43 35899999999999999999999999999999864
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.24 Score=47.47 Aligned_cols=125 Identities=11% Similarity=0.073 Sum_probs=70.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+... ....+-.-.....+-+..+ .+++-+...+..
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~i-nP~~~V~~~~~~ 89 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDI-NPECEVDAVEEF 89 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHH-CCCcEEEEeeee
Confidence 3589999999999999999999997 889998775333333322100 0000000011112222222 256666665433
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
-..+.+..+.. ..-++|||+.-.. .....+.+.+.+.++.++.+.-.|
T Consensus 90 -i~~~~~~~l~~--~~~D~VvdaiD~~-~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 90 -LTPDNSEDLLG--GDPDFVVDAIDSI-RAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred -cCHhHHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHhCCCEEEEeCCc
Confidence 11122223321 2358999986654 344556777778888888864333
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.26 Score=48.09 Aligned_cols=85 Identities=15% Similarity=0.234 Sum_probs=56.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++++-|-|+ +-+|..+|+.|+++|++|++..|+.++++++.++..... . ++ ++++-+=+.++.
T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~--------~----v~----v~vi~~DLs~~~ 69 (265)
T COG0300 6 GKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT--------G----VE----VEVIPADLSDPE 69 (265)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh--------C----ce----EEEEECcCCChh
Confidence 446777786 889999999999999999999999999999887654210 0 01 333333334445
Q ss_pred hHHHHHHHHhhhcCCCCEEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~ 103 (484)
.+..+.+++.....+=+++|++
T Consensus 70 ~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 70 ALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHHHHHhcCCcccEEEEC
Confidence 5666666665542233566665
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.49 Score=43.40 Aligned_cols=41 Identities=27% Similarity=0.337 Sum_probs=34.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
|++.|+|...||..++..|++.|++|.+.+|++++.+.+..
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~ 41 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR 41 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence 46888887678888999999999999999999887665543
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.14 Score=51.19 Aligned_cols=80 Identities=10% Similarity=0.232 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.||+|+|. |..|.-|.+.|.++.+ ++.....+.. + . ..+.+++.+. +|++|+|+|++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----~------------~-~~~~~~~~~~---~D~vFlalp~~- 60 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----K------------D-AAERAKLLNA---ADVAILCLPDD- 60 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----c------------C-cCCHhHhhcC---CCEEEECCCHH-
Confidence 48999985 9999999999998854 3332221111 0 0 1244455555 89999999998
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+.+..+ ...|..|||.|+..
T Consensus 61 ~s~~~~~~~---~~~g~~VIDlSadf 83 (310)
T TIGR01851 61 AAREAVSLV---DNPNTCIIDASTAY 83 (310)
T ss_pred HHHHHHHHH---HhCCCEEEECChHH
Confidence 444444443 24688999999754
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.24 Score=47.22 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..++..|++.|++|.+.+|++++.+.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAA 49 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888885 899999999999999999999999887665543
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.14 Score=50.57 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=55.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHh----CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++.|||-+ .+|.++|..|.+ ++..|++++.+.. ++.+.++. ||+||.++.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t~---------------------~l~~~~~~---ADIVI~AvG 213 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRTP---------------------DLAEECRE---ADFLFVAIG 213 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 579999965 589999999998 6788998875421 34555666 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 214 ~p~li~------~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 214 RPRFVT------ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCCcCC------HHHcCCCCEEEEeeeec
Confidence 774322 13568999999998654
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.51 Score=45.75 Aligned_cols=114 Identities=19% Similarity=0.173 Sum_probs=71.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|--||+|. | .++..+++.|.. |+++|.++..++...+..... ++ .+...+...-...|+|+...... .
T Consensus 121 ~~VLDiGcGs-G-~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~---~~---~~~~~~~~~~~~fD~Vvani~~~-~ 191 (250)
T PRK00517 121 KTVLDVGCGS-G-ILAIAAAKLGAKKVLAVDIDPQAVEAARENAELN---GV---ELNVYLPQGDLKADVIVANILAN-P 191 (250)
T ss_pred CEEEEeCCcH-H-HHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc---CC---CceEEEccCCCCcCEEEEcCcHH-H
Confidence 4788999998 6 455566777765 999999999887766543322 11 00001111000278888765433 5
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..++.++...+++|..++-.+.. ......+.+.+.+.|+..+.
T Consensus 192 ~~~l~~~~~~~LkpgG~lilsgi~-~~~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 192 LLELAPDLARLLKPGGRLILSGIL-EEQADEVLEAYEEAGFTLDE 235 (250)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECc-HhhHHHHHHHHHHCCCEEEE
Confidence 667778888889888777654333 34555667777777876654
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=52.59 Aligned_cols=123 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..++.+|++.|. +++++|.+.=....+..+.. .....+..-+....+-+..+ .+++-+...+..-
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~-np~v~i~~~~~~i 120 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI-QPDIRVNALRERL 120 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH-CCCCeeEEeeeec
Confidence 579999999999999999999997 89999987543333332110 00000000011112222222 2555555554331
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..+.+.+ .+..-++|||++-.. ..-..+.+.+...++.++.+.+.|
T Consensus 121 -~~~~~~~---~~~~~DlVid~~Dn~-~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 121 -TAENAVE---LLNGVDLVLDGSDSF-ATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred -CHHHHHH---HHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEec
Confidence 1222223 334558999998763 333344556677788888776553
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.36 Score=45.74 Aligned_cols=41 Identities=15% Similarity=0.352 Sum_probs=35.2
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888875 889999999999999999999999887766543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.28 Score=47.17 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=34.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 52 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAE 52 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 46888874 999999999999999999999999877655443
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.17 Score=47.54 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|++++|-|.|. |.+|..++..|+++ ++|++.+|+++..+.+.
T Consensus 1 ~~~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 1 MERPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 55567888874 99999999999999 99999999987765554
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.35 Score=46.28 Aligned_cols=87 Identities=15% Similarity=0.156 Sum_probs=58.1
Q ss_pred EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC--
Q 011501 29 ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-- 106 (484)
Q Consensus 29 V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-- 106 (484)
|.+||+++++.+.+.+.. ++..+++++++++. .+|+|++|.|+..+.+. .... ++.|.-++-.+..
T Consensus 5 vaV~D~~~e~a~~~a~~~------g~~~~~d~~eLl~~--~vDaVviatp~~~H~e~-a~~a---L~aGkhVl~~s~gAl 72 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERC------GAKIVSDFDEFLPE--DVDIVVEAASQEAVKEY-AEKI---LKNGKDLLIMSVGAL 72 (229)
T ss_pred EEEECCCHHHHHHHHHHh------CCceECCHHHHhcC--CCCEEEECCChHHHHHH-HHHH---HHCCCCEEEECCccc
Confidence 568999999988887654 25678899998752 49999999999854433 3333 3445433335543
Q ss_pred -ChHHHHHHHHHHHHcCCeEEe
Q 011501 107 -WYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 107 -~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.....+++.+..++.|..+.-
T Consensus 73 ad~e~~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 73 ADRELRERLREVARSSGRKVYI 94 (229)
T ss_pred CCHHHHHHHHHHHHhcCCEEEE
Confidence 345566777777777765543
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.31 Score=50.21 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=32.3
Q ss_pred CCeEEEE----c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 3 QTRIGLA----G-LAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 3 ~~~IgiI----G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
+++|.|+ | .|.+|..++..|+++||+|++.+|++..
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 3689999 6 6999999999999999999999998765
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.23 Score=47.39 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=35.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++|.|.| .|.+|..+++.|+++|++|++.+|++++...+.+
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~ 48 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAE 48 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 35788888 6999999999999999999999999876655443
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.27 Score=50.22 Aligned_cols=93 Identities=12% Similarity=0.115 Sum_probs=56.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCC----HhHHH-hhc--CCCcEEEEe
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHD----PESFV-HSI--QKPRVIIML 76 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s----~~e~~-~~l--~~advIi~~ 76 (484)
++.|+|+|.+|...+..+...|. +|++.|+++++++.+.+.+... ..... ..+.+ +.. ..+|++|.|
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~-----~~~~~~~~~~~~~~~~~t~g~g~D~vie~ 245 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD-----VVVNPSEDDAGAEILELTGGRGADVVIEA 245 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe-----EeecCccccHHHHHHHHhCCCCCCEEEEC
Confidence 58999999999998887878885 7888899999988776644321 11111 11111 111 237788887
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.... .+++....++++-.++..+..
T Consensus 246 ~G~~~----~~~~ai~~~r~gG~v~~vGv~ 271 (350)
T COG1063 246 VGSPP----ALDQALEALRPGGTVVVVGVY 271 (350)
T ss_pred CCCHH----HHHHHHHHhcCCCEEEEEecc
Confidence 76432 333444445555555554444
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.34 Score=47.38 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=36.1
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|+.++|-|.| .|.+|..++..|++.|++|++.+|+++..+.+.
T Consensus 1 ~~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 44 (275)
T PRK08263 1 MMEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLA 44 (275)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5555687887 599999999999999999999999988766544
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.24 Score=47.82 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=54.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..++..|+++|++|++.+|++++.+++.+... .. . . ...+-+=+.+...
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~--------~~----~---~---~~~~~~Dl~~~~~ 64 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLP--------KA----A---R---VSVYAADVRDADA 64 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc--------cC----C---e---eEEEEcCCCCHHH
Confidence 5777776 6899999999999999999999999887665543211 00 0 1 2233333334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++.++++.....+-+++|++...
T Consensus 65 i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 65 LAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 556666655544444777776543
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.17 Score=50.21 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=54.7
Q ss_pred CeEEEEccc-HHHHHHHHHHHh----CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLA-VMGQNLALNIAE----KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~----~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++|.|||-+ .+|.++|..|.+ .|..|+++..+.. ++++.+.. ||+||.+++
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t~---------------------~l~~~~~~---ADIvI~Avg 215 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSATK---------------------DIPSYTRQ---ADILIAAIG 215 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCch---------------------hHHHHHHh---CCEEEEecC
Confidence 579999964 589999999987 6889998875532 34455666 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+.-+. ..++++|.+|||.+...
T Consensus 216 ~~~li~------~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 216 KARFIT------ADMVKPGAVVIDVGINR 238 (295)
T ss_pred ccCccC------HHHcCCCCEEEEeeccc
Confidence 653211 23468999999998654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.38 Score=47.16 Aligned_cols=121 Identities=14% Similarity=0.127 Sum_probs=67.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|+..|.+|++.|. +++++|.+.-....+..+... ....+-.-+.-..+-+..+ .+++-+..++..-
T Consensus 31 s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~I-NP~~~V~~i~~~i 109 (268)
T PRK15116 31 AHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQI-NPECRVTVVDDFI 109 (268)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhH-CCCcEEEEEeccc
Confidence 589999999999999999999994 899998775443333221100 0000000000111222221 2566555554321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
..+-+..+.. ..-++|||+.-.. ..-..+.+.+.+.++.++.+.
T Consensus 110 -~~e~~~~ll~--~~~D~VIdaiD~~-~~k~~L~~~c~~~~ip~I~~g 153 (268)
T PRK15116 110 -TPDNVAEYMS--AGFSYVIDAIDSV-RPKAALIAYCRRNKIPLVTTG 153 (268)
T ss_pred -ChhhHHHHhc--CCCCEEEEcCCCH-HHHHHHHHHHHHcCCCEEEEC
Confidence 1122223321 2357899987653 334456777788888888764
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.4 Score=46.46 Aligned_cols=41 Identities=10% Similarity=0.168 Sum_probs=34.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45767775 899999999999999999999999876665543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.39 Score=45.83 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEe-----c
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIML-----V 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~-----v 77 (484)
++|.=||+| |..|+.-|++.|..|++.|.+++.++.........+ ..+ -...+.+++...-+.-|+|+.+ |
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~g-v~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESG-VNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcc-ccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 467778888 568999999999999999999998877664433221 111 1234666666532457888775 3
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
|++ +.++..+...++||-+++..
T Consensus 138 ~dp---~~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 138 PDP---ESFLRACAKLVKPGGILFLS 160 (243)
T ss_pred CCH---HHHHHHHHHHcCCCcEEEEe
Confidence 443 45677777778887666543
|
|
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.6 Score=49.54 Aligned_cols=121 Identities=18% Similarity=0.121 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 81 (484)
.+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+... . .... ....+.... +|+||.+- |...
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~-~---~~~~-~~~~~~~~~---~d~vV~SPgI~~~~ 77 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYS-K---NAIA-ALSDSRWQN---LDKIVLSPGIPLTH 77 (454)
T ss_pred CEEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhc-C---ceec-cCChhHhhC---CCEEEECCCCCCCC
Confidence 58999999999999999998 49999999965443322221100 0 1111 112233333 88887753 3322
Q ss_pred h-HHHHH---------HHHh-hhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 P-VDQTI---------KTLS-VYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~-v~~vl---------~~l~-~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. +.... -+++ ..... ..+-|-.|+++-.++.-+...+...|..+.-++..|.
T Consensus 78 p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~ 141 (454)
T PRK01368 78 EIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGV 141 (454)
T ss_pred HHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCH
Confidence 2 22111 1222 22222 2344556666655566667777777766554444443
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.42 Score=46.53 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=35.4
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 356888875 889999999999999999999999887766543
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.063 Score=55.40 Aligned_cols=35 Identities=23% Similarity=0.456 Sum_probs=33.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC---CCcEEEEeCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK---GFPISVYNRT 35 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~---G~~V~v~dr~ 35 (484)
|++.+|.|||.|..|..+|..|+++ |++|.++++.
T Consensus 1 m~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 1 MSRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CCcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 7778999999999999999999998 9999999995
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.35 Score=46.51 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=34.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|+++|++|.+++|+++..+.+.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVA 53 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 56777765 889999999999999999999999877665544
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.35 Score=49.07 Aligned_cols=84 Identities=12% Similarity=0.160 Sum_probs=54.7
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE--EEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI--IMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI--i~~vp~~ 80 (484)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+..... . .++. ..=+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~----------------g---~~~~~v~~Dv~d~ 69 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA----------------G---GEALAVVADVADA 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc----------------C---CcEEEEEecCCCH
Confidence 35777775 88999999999999999999999988776655432110 0 2222 2223344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+...+.+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 70 EAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 45666666665555455777776543
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.92 Score=47.75 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~ 79 (484)
++|.|||+|..|.+.+..|++.|++|+++|..+.. .+.+. .+. .+.......+.++. .|+||.+- |.
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~-----~~~~~~~~~~~~~~---~d~vv~spgi~~ 77 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENV-----ERHTGSLNDEWLLA---ADLIVASPGIAL 77 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCC-----EEEeCCCCHHHhcC---CCEEEECCCCCC
Confidence 47999999999999999999999999999975432 22221 111 12111222233443 78766643 22
Q ss_pred C-chHHHHH---------HHHhhhcCC-CCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 G-SPVDQTI---------KTLSVYMEK-GDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~-~~v~~vl---------~~l~~~l~~-g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+ ..+.... .++...+.. ..+-|-.|++.-.++.-+...|...|..+.
T Consensus 78 ~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~ 135 (438)
T PRK03806 78 AHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVG 135 (438)
T ss_pred CCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 2 1122211 123322222 234466666765566666777777776543
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.35 Score=46.66 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=54.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..+|+.|+++|++|++.+|++++.+.+.+.... .-.. ..++-.-+.+...
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~--------------~~~~---~~~~~~Dl~d~~~ 75 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA--------------LGID---ALWIAADVADEAD 75 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEEccCCCHHH
Confidence 5677887 59999999999999999999999998776554432210 0000 2222223334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++..++.+.....+=+.||++...
T Consensus 76 i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 76 IERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCC
Confidence 555566655544444677777543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.08 Score=53.45 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVD 40 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 40 (484)
++|||||-|..|.-|+..-.+-|++|++.|.+++.-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA 38 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPA 38 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCch
Confidence 5899999999999999999999999999998887543
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.45 Score=46.03 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+.+... .. ...+..-+.+...
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 66 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG-----------------DH---VLVVEGDVTSYAD 66 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---ceEEEccCCCHHH
Confidence 45667765 789999999999999999999999887666543211 00 1222223333345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~g~id~li~~ag~ 90 (263)
T PRK06200 67 NQRAVDQTVDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 556666655544444677776653
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.49 Score=45.54 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|+++|++|.+.+|++++.+.+.+
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46778876 899999999999999999999999887766554
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.13 Score=52.20 Aligned_cols=89 Identities=13% Similarity=0.238 Sum_probs=55.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHh-CCCc---EEEEeCC--hhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGL-AVMGQNLALNIAE-KGFP---ISVYNRT--TSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~-~G~~---V~v~dr~--~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~ 75 (484)
++|||||. |..|..|.+.|.+ ..++ +..+... ..+.-.+.. . .+... .+++++ .. .|++|+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~---~----~l~v~~~~~~~~-~~---~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKG---R----EIIIQEAKINSF-EG---VDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCC---c----ceEEEeCCHHHh-cC---CCEEEE
Confidence 58999996 9999999999995 5666 4444332 222111111 0 12221 244444 44 899999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++|.+ ...++...+ ...|..|||.|+..
T Consensus 75 a~~~~-~s~~~~~~~---~~~G~~VID~Ss~f 102 (347)
T PRK06728 75 SAGGE-VSRQFVNQA---VSSGAIVIDNTSEY 102 (347)
T ss_pred CCChH-HHHHHHHHH---HHCCCEEEECchhh
Confidence 99887 444444443 34689999999765
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.23 Score=41.19 Aligned_cols=72 Identities=13% Similarity=0.113 Sum_probs=46.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..+|.|||.|.+|..=++.|.+.|.+|+++.++.+. .+. .++.. ...++. +..+++|+.++.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~----~~~-------~i~~~~~~~~~~---l~~~~lV~~at~d~- 71 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEF----SEG-------LIQLIRREFEED---LDGADLVFAATDDP- 71 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHH----HHT-------SCEEEESS-GGG---CTTESEEEE-SS-H-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh----hhh-------HHHHHhhhHHHH---HhhheEEEecCCCH-
Confidence 357999999999999999999999999999988611 111 12221 222333 34489999888665
Q ss_pred hHHHHHHH
Q 011501 82 PVDQTIKT 89 (484)
Q Consensus 82 ~v~~vl~~ 89 (484)
.+...+..
T Consensus 72 ~~n~~i~~ 79 (103)
T PF13241_consen 72 ELNEAIYA 79 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.068 Score=55.57 Aligned_cols=37 Identities=19% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+..+|.|||.|..|..+|..|++.|++|.++++.+.
T Consensus 1 m~~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 1 MQSVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred CCcCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 5556899999999999999999999999999999875
|
|
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.83 Score=47.87 Aligned_cols=74 Identities=9% Similarity=0.151 Sum_probs=49.5
Q ss_pred CeEEEEcccHHHH-HHHHHHHhC-----CCcEEEEeCC-hhHHHHHH---HHhhhc-C-CCCeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQ-NLALNIAEK-----GFPISVYNRT-TSKVDETV---ERAKQE-G-NLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~-~lA~~L~~~-----G~~V~v~dr~-~~~~~~~~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~ad 71 (484)
|||+|||.|..-+ .+...|+.. +-+|..+|++ +++++... ++..+. + ...+..+++.++++.. +|
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~g---ad 77 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEG---AD 77 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CC
Confidence 5899999999643 344455542 3589999999 78764422 111111 0 2257778899998887 99
Q ss_pred EEEEecCCC
Q 011501 72 VIIMLVKAG 80 (484)
Q Consensus 72 vIi~~vp~~ 80 (484)
+||+++-.+
T Consensus 78 fVi~~~~vg 86 (419)
T cd05296 78 FVFTQIRVG 86 (419)
T ss_pred EEEEEEeeC
Confidence 999988544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.069 Score=55.13 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=34.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+..+|.|||.|.-|..+|..|+++|++|+++++.+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 37 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 6667899999999999999999999999999998764
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.39 Score=46.06 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=34.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
++|-|.|. |.+|..+++.|+++|++|.+.+|++++.+.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 46889997 9999999999999999999999998776544
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.41 Score=45.69 Aligned_cols=41 Identities=29% Similarity=0.481 Sum_probs=35.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++-|.| .|.+|..+++.|+++|++|.+.+|++++.+++.+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~ 43 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT 43 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence 3566776 6999999999999999999999999888776654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.34 Score=46.58 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=34.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+.+-|.|. |.+|..++..|++.|++|.+.+|++++.+.+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLAD 51 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 35667775 889999999999999999999999887766554
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.092 Score=40.07 Aligned_cols=30 Identities=20% Similarity=0.533 Sum_probs=27.4
Q ss_pred EEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 8 LAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 8 iIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|||.|.-|...|..|+++|++|++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence 799999999999999999999999998864
|
... |
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.066 Score=56.37 Aligned_cols=36 Identities=19% Similarity=0.396 Sum_probs=33.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+.++++|||+|.-|.+.|++|.+.|++|.++.|+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 356899999999999999999999999999999865
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.075 Score=54.77 Aligned_cols=35 Identities=17% Similarity=0.401 Sum_probs=32.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|++|.|||.|..|..+|..|+++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 36899999999999999999999999999998875
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.39 Score=46.55 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=54.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|+++|++|.+.+|++++.+++.+.... .-.. ..++-.-+.+...
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~--------------~~~~---~~~~~~D~~~~~~ 73 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRA--------------AGRR---AHVVAADLAHPEA 73 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCc---EEEEEccCCCHHH
Confidence 46777765 6799999999999999999999998776655443210 0000 1222233444445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++.+...+.+=++||++..
T Consensus 74 ~~~~~~~~~~~~~~id~vi~~Ag 96 (263)
T PRK07814 74 TAGLAGQAVEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHHHHHHHHHcCCCCEEEECCC
Confidence 66666666554444467777654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.12 Score=40.63 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=30.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
||.|||.|..|.-+|..|++.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 689999999999999999999999999998765
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.71 Score=48.46 Aligned_cols=74 Identities=16% Similarity=0.271 Sum_probs=51.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHH---HHhhhc-C-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETV---ERAKQE-G-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~~~---~~~~~~-~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.. .-.+...|+.. +-+|..+|.++++.+... ++..+. + .+++..++|.+++++. +|+
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~g---ADf 77 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIID---ADF 77 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCC---CCE
Confidence 58999999984 33455555543 358999999998765432 111111 1 2357788899999887 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||..+-.+
T Consensus 78 Vi~~irvG 85 (425)
T cd05197 78 VINQFRVG 85 (425)
T ss_pred EEEeeecC
Confidence 99998665
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.081 Score=54.66 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=33.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|...+|.|||.|..|..+|..|++.|++|+++++.+
T Consensus 1 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MNKYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 655689999999999999999999999999999764
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.22 Score=51.64 Aligned_cols=124 Identities=12% Similarity=0.093 Sum_probs=70.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..++.+|+..|. +++++|.+.=....+..+.. .....+-.-+....+-+..+ .+++-|.+.+..-
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~-np~v~v~~~~~~~ 117 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEI-NPYCQVDLYETRL 117 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHH-CCCCeEEEEeccc
Confidence 589999999999999999999998 78889877543333322110 00000000111122222222 2566666655431
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
. .+... ..+..-++|||++-.. ..-..+.+.+.+.++.++.+.+.|-
T Consensus 118 ~-~~~~~---~~~~~~D~Vvd~~d~~-~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 118 S-SENAL---DILAPYDVVVDGTDNF-PTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred C-HHhHH---HHHhCCCEEEECCCCH-HHHHHHHHHHHHcCCCEEEEEEccC
Confidence 1 11122 2344568999997764 3333345566677888887776654
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.49 Score=45.58 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|.+|..+|+.|+++|++|.+.+|+.+..+.+.+
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 48 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAAL 48 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 3577777 5999999999999999999999999887665543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.4 Score=46.00 Aligned_cols=41 Identities=29% Similarity=0.328 Sum_probs=34.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|++.|++|.+.+|+++..+++.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVA 49 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 56888875 889999999999999999999999887665544
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.08 Score=54.26 Aligned_cols=35 Identities=23% Similarity=0.444 Sum_probs=32.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
|+|.|||.|.-|..+|..|+++|++|+++++++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 48999999999999999999999999999988753
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.41 Score=48.51 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=55.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE--EEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRV--IIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv--Ii~~vp~~ 80 (484)
+.|-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.++.... . +++ +..=+.+.
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~d~ 68 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL----------------G---AEVLVVPTDVTDA 68 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 35767776 88999999999999999999999988877665432110 0 222 22234444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++.+++.+.....+=+++|++...
T Consensus 69 ~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 69 DQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 56666666665544344777777543
|
|
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.079 Score=54.26 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=32.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|++.+|.|||.|.+|.++|..|++.|++|+++|+..
T Consensus 1 ~~~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 1 TMRYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 555679999999999999999999999999999874
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.5 Score=46.04 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=51.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+... . .+.+..=+.+...
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~--------------------~---~~~~~~Dl~~~~~ 58 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA--------------------G---FTAVQLDVNDGAA 58 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC--------------------C---CeEEEeeCCCHHH
Confidence 46777774 8899999999999999999999998765543321 0 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++++.+.....+=+++|++...
T Consensus 59 ~~~~~~~~~~~~~~id~vi~~ag~ 82 (274)
T PRK05693 59 LARLAEELEAEHGGLDVLINNAGY 82 (274)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCC
Confidence 556666655444344677776653
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=40.12 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=76.4
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCchHHHHHH
Q 011501 10 GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGSPVDQTIK 88 (484)
Q Consensus 10 GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~ 88 (484)
|+|.++--+| ++...-+|+..|++++.++.......+-+..++.. ..+..+....+.++|.||+-=. ..++.+++
T Consensus 44 GtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg--~~i~~ile 119 (187)
T COG2242 44 GTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG--GNIEEILE 119 (187)
T ss_pred CccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC--CCHHHHHH
Confidence 4556666666 44445689999999988766554332211002222 2344455556667999999865 47899999
Q ss_pred HHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCC-eEEeccCCCC
Q 011501 89 TLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGL-LYLGMGVSGG 133 (484)
Q Consensus 89 ~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~-~~i~~pv~gg 133 (484)
....++++| .+|++..|. ++.....+.+++.|+ ..+-.-++-+
T Consensus 120 ~~~~~l~~ggrlV~naitl--E~~~~a~~~~~~~g~~ei~~v~is~~ 164 (187)
T COG2242 120 AAWERLKPGGRLVANAITL--ETLAKALEALEQLGGREIVQVQISRG 164 (187)
T ss_pred HHHHHcCcCCeEEEEeecH--HHHHHHHHHHHHcCCceEEEEEeecc
Confidence 999888775 677777765 466667778888888 5555444433
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.55 Score=45.21 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=34.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..++..|+++|++|.+.+|+++..+.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888875 999999999999999999999999876655543
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.27 Score=46.75 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++.|.|. |.+|..++..|+++|++|.+.+|++++.+++.+
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 47888987 899999999999999999999999887665543
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.085 Score=54.94 Aligned_cols=34 Identities=26% Similarity=0.456 Sum_probs=31.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+|.|||.|.+|.+.|..|+++|++|+++|+...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 4899999999999999999999999999999754
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.5 Score=45.72 Aligned_cols=40 Identities=13% Similarity=0.270 Sum_probs=33.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
+++-|.|. |.+|..+|+.|+++|++|.+.+|+.++.+++.
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45667764 78999999999999999999999987766554
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.44 Score=45.44 Aligned_cols=41 Identities=24% Similarity=0.386 Sum_probs=35.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++.|+|. |.+|..+++.|+++|+.|++.+|++++.+...+
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~ 47 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVA 47 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46888987 999999999999999999999999877655543
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.54 Score=47.06 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=52.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+... . ...+-.=+.+...
T Consensus 27 k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------------------~---v~~~~~Dl~d~~~ 85 (315)
T PRK06196 27 KTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------------------G---VEVVMLDLADLES 85 (315)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------------------h---CeEEEccCCCHHH
Confidence 45777775 889999999999999999999999887665443210 0 1222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|++..
T Consensus 86 v~~~~~~~~~~~~~iD~li~nAg 108 (315)
T PRK06196 86 VRAFAERFLDSGRRIDILINNAG 108 (315)
T ss_pred HHHHHHHHHhcCCCCCEEEECCC
Confidence 55666665554334466666654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=0.41 Score=46.28 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=53.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|++-|.|. |.+|..+|+.|+++|++|++.+|++++.++..++.... .. ...+-.-+.+.+.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------------~~---~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---------------GE---VYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---------------CC---ceEEEcCCCCHHH
Confidence 47888875 77999999999999999999999988766554432100 00 1122222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|++..
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG 85 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAG 85 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCC
Confidence 66666666554444467776544
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.38 Score=45.88 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=35.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|+|. |.+|..+++.|+++|++|++.+|++++.+.+..
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAA 47 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57889985 899999999999999999999999877665543
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.81 Score=48.25 Aligned_cols=118 Identities=14% Similarity=0.146 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhH--HHHHHHHhhhcCCCCeee--c-CCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSK--VDETVERAKQEGNLPLYG--F-HDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~--~~~~~~~~~~~~~~~~~~--~-~s~~e~~~~l~~advIi~~ 76 (484)
++|.|||+|..|.+-+..|.+. |++|+++|.++.. .+.+.+ + +.. . .+++. +.+ +|+||.+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g-------~~~~~g~~~~~~-~~~---~d~vV~S 75 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-D-------VELHSGGWNLEW-LLE---ADLVVTN 75 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-C-------CEEEeCCCChHH-hcc---CCEEEEC
Confidence 5799999999999999999987 5899999976532 122321 1 222 2 23333 344 8988775
Q ss_pred c--CCCch-HHHHH---------HHHhh-hcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 77 V--KAGSP-VDQTI---------KTLSV-YMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 77 v--p~~~~-v~~vl---------~~l~~-~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
- |.... +.... -+++. .++...|-|-.|+++-.++.-+...+...|..+.-.+..|.
T Consensus 76 pgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~ 145 (438)
T PRK04663 76 PGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGV 145 (438)
T ss_pred CCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCH
Confidence 4 33222 22211 13332 22323344555666655555566677777765443333333
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.46 Score=48.85 Aligned_cols=114 Identities=16% Similarity=0.270 Sum_probs=67.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh--------HHHHHHHHhhhcC---C-CCeeecCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS--------KVDETVERAKQEG---N-LPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~--------~~~~~~~~~~~~~---~-~~~~~~~s~~e~~~~l~~ad 71 (484)
++|+|=|.|++|..+|+.|.+.|.+|.+++-+.. ..+.+.+.....+ + .+.+..+. +++... .||
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~-~e~~~~--~cD 284 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITN-EELLEV--DCD 284 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccc-cccccc--cCc
Confidence 5899999999999999999999999988865554 1111111000000 0 01223323 444432 388
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+-|--...-..+-+.. +.. ++|+...|.. .+.+..+.+.++|+-|+.
T Consensus 285 Il~PcA~~n~I~~~na~~----l~a-k~V~EgAN~P--~t~eA~~i~~erGIl~~P 333 (411)
T COG0334 285 ILIPCALENVITEDNADQ----LKA-KIVVEGANGP--TTPEADEILLERGILVVP 333 (411)
T ss_pred EEcccccccccchhhHHH----hhh-cEEEeccCCC--CCHHHHHHHHHCCCEEcC
Confidence 887765444322233333 322 3788888774 445666677789987764
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.3 Score=41.21 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=67.6
Q ss_pred CeEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC-CCCeee-cCCHhHHHhhc-CCCcEEEEecC
Q 011501 4 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLPLYG-FHDPESFVHSI-QKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~-~~s~~e~~~~l-~~advIi~~vp 78 (484)
.+|.-+|+|. ++..+++.+ ..+.+|+.+|++++.++.+.+.....+ ..++.. ..+..+....+ ...|.|++...
T Consensus 42 ~~vlDlG~GtG~~s~~~a~~~-~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~~ 120 (198)
T PRK00377 42 DMILDIGCGTGSVTVEASLLV-GETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGGG 120 (198)
T ss_pred CEEEEeCCcCCHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECCC
Confidence 3577888866 333333332 234579999999988776544322110 002222 23444544333 35899998654
Q ss_pred CCchHHHHHHHHhhhcCCCCE-EEecCCCChHHHHHHHHHHHHcCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDC-IIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~i-iId~st~~~~~~~~~~~~l~~~g~ 123 (484)
.. ....+++.+...+++|-. +++.. ......+..+.+++.|+
T Consensus 121 ~~-~~~~~l~~~~~~LkpgG~lv~~~~--~~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 121 SE-KLKEIISASWEIIKKGGRIVIDAI--LLETVNNALSALENIGF 163 (198)
T ss_pred cc-cHHHHHHHHHHHcCCCcEEEEEee--cHHHHHHHHHHHHHcCC
Confidence 33 567788888888887655 44443 34556666677777775
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.29 Score=49.06 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=68.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
||.|||+|.+|..++++|+..|. +++++|.+.-....+..+-. .....+-.-.....+.++.+ .+++-+.+....
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~l-Np~v~V~~~~~~-- 77 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSF-NPNVKIVAYHAN-- 77 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHH-CCCCeEEEEecc--
Confidence 58999999999999999999997 78999987654444432210 00000000011112222222 145555544322
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.+. ......+..=++||++.-. +..-..+.+.+...++.|++++..|
T Consensus 78 i~~~-~~~~~f~~~~DvVv~a~Dn-~~ar~~in~~c~~~~ip~I~~gt~G 125 (312)
T cd01489 78 IKDP-DFNVEFFKQFDLVFNALDN-LAARRHVNKMCLAADVPLIESGTTG 125 (312)
T ss_pred CCCc-cchHHHHhcCCEEEECCCC-HHHHHHHHHHHHHCCCCEEEEecCc
Confidence 1110 0011234455788888654 3443446667778899999987665
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.086 Score=52.96 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||.|.-|..+|..|+++|++|.++++++.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 3799999999999999999999999999999765
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.9 Score=45.11 Aligned_cols=102 Identities=12% Similarity=0.137 Sum_probs=66.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCC--Ceeec-CCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNL--PLYGF-HDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~~-~s~~e~~~~l~~advIi~~v 77 (484)
..+|..||+|..|..-...++.+ +-+++.+|++++..+..++......++ +++.. .+..+....+.+.|+|++.+
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~A 203 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLAA 203 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEec
Confidence 35899999999876554444433 236999999999887666544221011 23322 23334332244589999986
Q ss_pred C---CCchHHHHHHHHhhhcCCCCEEEecC
Q 011501 78 K---AGSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 78 p---~~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
- +...-..+++.+...+++|.+++-.+
T Consensus 204 Li~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 204 LVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 2 11345788899999999999888776
|
|
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.71 Score=44.74 Aligned_cols=111 Identities=12% Similarity=0.094 Sum_probs=64.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.++-|+|.|..+.++++.+...||+|+++|.+++......-... .......+++....+...+.|++++-+. ..
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~t~vvi~th~h-~~ 174 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPEDLPDGV-----ATLVTDEPEAEVAEAPPGSYFLVLTHDH-AL 174 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccccCCCCc-----eEEecCCHHHHHhcCCCCcEEEEEeCCh-HH
Confidence 58999999999999999999999999999977652211100000 0122344566655444467777777544 33
Q ss_pred H-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 84 D-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 84 ~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+ .++..+++. ...-+|-+=.+. ....++.+.+.+.|+
T Consensus 175 D~~~L~~aL~~--~~~~YIG~lGSr-~k~~~~~~~L~~~G~ 212 (246)
T TIGR02964 175 DLELCHAALRR--GDFAYFGLIGSK-TKRARFEHRLRARGV 212 (246)
T ss_pred HHHHHHHHHhC--CCCcEEEEeCCH-HHHHHHHHHHHhcCC
Confidence 3 444444421 222233332222 345566667766664
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.66 Score=44.75 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=35.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|+| .|.+|..+++.|+++|++|.+.+|++++.+++..
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAA 43 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence 4688887 5889999999999999999999999887776654
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.58 Score=45.60 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=53.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|.+|..++..|++.|++|.+.+|+++..+.+.+... .. ..++-.-+.+...
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 62 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG-----------------DR---LWVLQLDVTDSAA 62 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------Cc---eEEEEccCCCHHH
Confidence 4688887 5999999999999999999999999877665543210 01 2222233334444
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=++||++...
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~ag~ 86 (276)
T PRK06482 63 VRAVVDRAFAALGRIDVVVSNAGY 86 (276)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 555555554444444677776543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.46 Score=45.68 Aligned_cols=85 Identities=9% Similarity=0.135 Sum_probs=53.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++-|+| .|.+|..++..|+++|++|.+.+|++++.+.+...... .... ...+-.-+.+...+
T Consensus 4 ~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~Dl~~~~~~ 66 (256)
T PRK08643 4 VALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSK--------------DGGK---AIAVKADVSDRDQV 66 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------cCCe---EEEEECCCCCHHHH
Confidence 566665 58899999999999999999999998776655443210 0000 11122223444456
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 67 FAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666665544444677777654
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.34 Score=47.08 Aligned_cols=81 Identities=12% Similarity=0.204 Sum_probs=52.6
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+ .++|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.. .. ..++..=+.
T Consensus 1 m~~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~----------------------~~---~~~~~~D~~ 55 (270)
T PRK06179 1 MSNSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI----------------------PG---VELLELDVT 55 (270)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc----------------------CC---CeeEEeecC
Confidence 54 34577776 58999999999999999999999986543210 01 223333333
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+...++.+++.+.....+-+++|++...
T Consensus 56 d~~~~~~~~~~~~~~~g~~d~li~~ag~ 83 (270)
T PRK06179 56 DDASVQAAVDEVIARAGRIDVLVNNAGV 83 (270)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 4455666666665555555777777654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.61 Score=44.77 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=35.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..++..|++.|++|++.+|++++.+.+..
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~ 51 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRA 51 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 57888875 999999999999999999999999887766554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 484 | ||||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 1e-145 | ||
| 2iyp_A | 473 | Product Rup Length = 473 | 1e-134 | ||
| 2iyo_A | 472 | Structural Characterization Of A Bacterial 6pdh Rev | 1e-134 | ||
| 2iz0_A | 474 | Pex Inhibitor-Home Data Length = 474 | 1e-134 | ||
| 3fwn_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-133 | ||
| 2zya_A | 480 | Dimeric 6-Phosphogluconate Dehydrogenase Complexed | 1e-132 | ||
| 2zyg_A | 480 | Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas | 1e-131 | ||
| 1pgn_A | 482 | Crystallographic Study Of Coenzyme, Coenzyme Analog | 1e-122 | ||
| 2jkv_A | 505 | Structure Of Human Phosphogluconate Dehydrogenase I | 1e-121 | ||
| 4gwg_A | 484 | Crystal Structure Analysis Of 6-Phosphogluconate De | 1e-120 | ||
| 2p4q_A | 497 | Crystal Structure Analysis Of Gnd1 In Saccharomyces | 1e-120 | ||
| 1pgj_A | 478 | X-Ray Structure Of 6-Phosphogluconate Dehydrogenase | 9e-75 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 2e-17 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 1e-08 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 9e-07 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 7e-06 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 8e-06 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 4e-05 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 3e-04 | ||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 4e-04 |
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
| >pdb|2IYP|A Chain A, Product Rup Length = 473 | Back alignment and structure |
|
| >pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals Aspects Of Specificity, Mechanism And Mode Of Inhibition Length = 472 | Back alignment and structure |
|
| >pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data Length = 474 | Back alignment and structure |
|
| >pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate And 2'-Monophosphoadenosine-5'-Diphosphate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6- Phosphogluconate Length = 480 | Back alignment and structure |
|
| >pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480 | Back alignment and structure |
|
| >pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue And Substrate Binding In 6-Phosphogluconate Dehydrogenase: Implications For Nadp Specificity And The Enzyme Mechanism Length = 482 | Back alignment and structure |
|
| >pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In Complex With Nadph At 2.53a Length = 505 | Back alignment and structure |
|
| >pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate Dehydrogenase Apo- Form Length = 484 | Back alignment and structure |
|
| >pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces Cerevisiae Length = 497 | Back alignment and structure |
|
| >pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From The Protozoan Parasite T. Brucei Length = 478 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 484 | |||
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 0.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 0.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 0.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-127 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 7e-17 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 8e-17 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 9e-17 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 9e-17 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 2e-16 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 2e-16 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 4e-16 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 6e-16 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 4e-15 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 5e-15 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 9e-15 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 9e-15 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-14 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 2e-14 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 5e-11 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 1e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-07 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 9e-06 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 3e-06 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 1e-04 |
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 825 bits (2133), Expect = 0.0
Identities = 238/478 (49%), Positives = 330/478 (69%), Gaps = 9/478 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M Q G+ G+AVMG+NLALN+ +G+ +++YNRTTSK +E + + + L
Sbjct: 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKN---LVFTKTL 59
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E FV S++KPR I+++V+AG+ D TIK+L ++ GD +IDGGN + +T RR +A+
Sbjct: 60 EEFVGSLEKPRRIMLMVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELAD 119
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSG-PCVTYVGKG 179
G+ ++G GVSGGE+GA GPS+MPGG EAY + I ++AA+ P G PCV Y+G
Sbjct: 120 SGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFEQIAAKAPQDGKPCVAYMGAN 179
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239
G+G++VKM+HNGIEYGDMQLIAE+YD+LK + LSN E+Q +F EWN+GEL S+LIEIT
Sbjct: 180 GAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITK 239
Query: 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEE 299
++ KDD+G+GY+VDK+LDK G KGTGKWT + A DL V P I S+ AR++S K+E
Sbjct: 240 EVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDE 299
Query: 300 RVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWD 359
RV+A+KV + + + DKK++I+ +R+ALY SKI SYAQG +R S E WD
Sbjct: 300 RVKASKVLSGPAL-----DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWD 354
Query: 360 LKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419
L G + +IW+ GCIIRA FL I A+D++ +L N+L+D F Q A R VV L
Sbjct: 355 LPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDYFVDITKRYQEAVRDVVSL 414
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477
A+ +G P +S+++Y+D+YR E LPANL+QAQRDYFGAHTYER D +G FH +W+
Sbjct: 415 AVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 823 bits (2128), Expect = 0.0
Identities = 239/476 (50%), Positives = 324/476 (68%), Gaps = 9/476 (1%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
M + +IG+ G+AVMG+NLALNI +G+ +S++NR+ K +E + + L ++
Sbjct: 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTV 69
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
+ FV S++ PR I+++VKAG+ D I +L Y++KGD IIDGGN ++++T RR + ++
Sbjct: 70 KEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSA 129
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G ++G GVSGGEEGA GPS+MPGG EAY+ + IL K+AA D PCVTY+G G
Sbjct: 130 EGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADG 189
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
+G++VKM+HNGIEYGDMQLIAEAY +LK L+NEEL Q F+EWN GEL S+LI+IT D
Sbjct: 190 AGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKD 249
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
IF KD+ G+ YLVD +LD+ KGTGKWT Q A DL I S+ AR++S LK++R
Sbjct: 250 IFTKKDEDGN-YLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQR 308
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
V A+KV A+ DK + I+ VR+ALY KI SYAQG + +RA S E WDL
Sbjct: 309 VAASKVLSGPQ-----AQPAGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDL 363
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
GE+ +I++ GCIIRA FL +I A NP +AN+L+ P F + + Q A R VV A
Sbjct: 364 NYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPYFKQIADDYQQALRDVVAYA 423
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWF 476
+ +GI P S+++AY+D+YR LPANL+QAQRDYFGAHTY+R+D G FHTEW
Sbjct: 424 VQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWL 479
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 819 bits (2118), Expect = 0.0
Identities = 234/474 (49%), Positives = 311/474 (65%), Gaps = 8/474 (1%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
Q I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G H E
Sbjct: 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEE 59
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
V ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G
Sbjct: 60 MVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG 119
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
+L++G GVSGGE+GARYGPSLMPGG+ EA+ HI+ I +AA+V PC +VG G+G
Sbjct: 120 ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAG 179
Query: 183 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIF 242
+FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ + F EWNK EL SFLIEITA I
Sbjct: 180 HFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASIL 239
Query: 243 GIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVE 302
+D G +L+ K+ D G KGTGKWT A + V I ++ AR LS LK+ER++
Sbjct: 240 KFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 298
Query: 303 AAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
A+K + G DKK ++D+R+ALYASKI SYAQG L+R + E GW L
Sbjct: 299 ASKKLK----GPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNY 354
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLAIN 422
G + +W+GGCIIR++FL +IK A+DRNP L N+L+D F + Q +WRR + +
Sbjct: 355 GGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAISTGVQ 414
Query: 423 SGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+GI P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 415 AGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 468
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 803 bits (2076), Expect = 0.0
Identities = 230/483 (47%), Positives = 313/483 (64%), Gaps = 15/483 (3%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
+ GL GLAVMGQNL LN A+ GF + YNRT SKVD + + ++ G
Sbjct: 8 HMSADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSI--IGATSI 65
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E F+ +++PR +++LVKAG+PVD I + +EKGD IIDGGN + ++ RR + + +
Sbjct: 66 EDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKK 125
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G+L++G GVSGGEEGARYGPSLMPGGS EA+ HI++I ++A+ D PC +VG G
Sbjct: 126 KGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKS-DGEPCCEWVGPAG 184
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240
+G++VKM+HNGIEYGDMQLI EAYD++K +G +++E+ VF++WN G L SFL+EIT D
Sbjct: 185 AGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRD 244
Query: 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEER 300
I D G LV+K++D G KGTGKWT A DL + I ++ AR LS LK ER
Sbjct: 245 ILKFDDVDGK-PLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNER 303
Query: 301 VEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL 360
+ A+KV +V + D+++ +DD+ QALYASKI SYAQG LIR + GW L
Sbjct: 304 IRASKVLPGP---EVPKDAVKDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKL 360
Query: 361 KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA 420
+ +W+GGCIIR++FL +I KAY PDL N+L + FA + + QS WR+ + LA
Sbjct: 361 NNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKFFADAVTKAQSGWRKSIALA 420
Query: 421 INSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS--------FH 472
GI TP S++L+++D YR ERLPANL+QAQRDYFGAHT+ + S H
Sbjct: 421 TTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIH 480
Query: 473 TEW 475
W
Sbjct: 481 INW 483
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 776 bits (2005), Expect = 0.0
Identities = 169/478 (35%), Positives = 261/478 (54%), Gaps = 9/478 (1%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP-LYGFHDPESFV 64
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ L F E+F
Sbjct: 4 VGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFA 63
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
S++KPR ++LV+AG+ D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 64 ASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR 123
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT G GG+G+
Sbjct: 124 FLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSC 183
Query: 185 VKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW-NKGELLSFLIEITADIFG 243
VKM HN EY +Q+ E +D+L+++G L+N+E+ V +W +K L S++++I+
Sbjct: 184 VKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAAR 242
Query: 244 IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEA 303
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K ER
Sbjct: 243 AKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQAN 301
Query: 304 AKVFRSSGIG-DVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKL 362
A + I + ++ + I YAQ +R + L L
Sbjct: 302 ASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNL 361
Query: 363 GELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCLA-I 421
++ GCI++ L + +A+++NP+++N++ F EI +R +V L
Sbjct: 362 PATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMCA--FQTEIRAGLQNYRDMVALITS 419
Query: 422 NSGISTPGMSSSLAYFDTYRRERLP-ANLVQAQRDYFGAHTYERVDMSGSFHTEWFKI 478
+S P +S+SL Y L LV QRD FG H YERVD G +W ++
Sbjct: 420 KLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPEL 477
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 374 bits (962), Expect = e-127
Identities = 87/341 (25%), Positives = 149/341 (43%), Gaps = 52/341 (15%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDP 60
+IG+ GL MG ++ + + G VY+ + V ++EG + G
Sbjct: 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQA----LEREG---IAGARSI 72
Query: 61 ESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE 120
E F + KPRV+ ++V A VD ++ ++ + D +IDGGN Y++ RR +
Sbjct: 73 EEFCAKLVKPRVVWLMVPAA-VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRA 131
Query: 121 LGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT------ 174
G+ Y+ +G SGG G G LM GG +A + ++ + +A + + P
Sbjct: 132 QGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTLAPGI-GAAPRTPGREKRE 190
Query: 175 --------YVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE---------- 216
+ G G+G+FVKM+HNGIEYG M AE ++L
Sbjct: 191 GTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPL 250
Query: 217 ----------ELQQVFSEWNKGELL-SFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKG 265
+L + W +G ++ S+L++++A D + + + G
Sbjct: 251 RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPD------LQEFQGRVSDSG 304
Query: 266 TGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKV 306
G+WTV A D V A + S+L RF S +++ A ++
Sbjct: 305 EGRWTVAAAIDEGVPAHVLSSALYERFSSRGEDDF--ANRL 343
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 7e-17
Identities = 44/209 (21%), Positives = 76/209 (36%), Gaps = 33/209 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+I G MG +A + E G+ + V+NRT ++ G E
Sbjct: 32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAA----------LGATIHEQA 81
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY--------MEKGDCIIDGGNEWYENTERRQ 115
+ + +++ +++ G+ V V M+ G +D +
Sbjct: 82 RAAARDADIVVSMLENGAVVQD------VLFAQGVAAAMKPGSLFLDMASITPREARDHA 135
Query: 116 KAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT 174
+ LG+ +L VSGG GA G +M GG ++ +L T
Sbjct: 136 ARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVFGR--------AT 187
Query: 175 YVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
+VG GSG K+ + I + +AEA
Sbjct: 188 HVGPHGSGQLTKLANQMIVGITIGAVAEA 216
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 8e-17
Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 33/210 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
++G GL +MG+ ++ N+ + G+ + V +R + + + G +
Sbjct: 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA----------GAETASTA 55
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERR 114
++ VII ++ V + V + G +ID + +
Sbjct: 56 KAIAEQCDVIITMLPNSPHVKE------VALGENGIIEGAKPGTVLIDMSSIAPLASREI 109
Query: 115 QKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCV 173
A+ G+ L VSGGE A G S+M GG + D++ + V
Sbjct: 110 SDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAM-------AGSV 162
Query: 174 TYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
+ G G+GN K+ + I ++ ++EA
Sbjct: 163 VHTGDIGAGNVTKLANQVIVALNIAAMSEA 192
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 80.0 bits (198), Expect = 9e-17
Identities = 32/225 (14%), Positives = 70/225 (31%), Gaps = 21/225 (9%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
+ + + GL MG +A + ++G ++++NR+ K V G H ES
Sbjct: 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA----------GAHLCES 58
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAEL 121
++ I ++ + + V I+D + Q V +
Sbjct: 59 VKAALSASPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQA 118
Query: 122 GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG 180
G Y+ + + + G EA++ +L + ++
Sbjct: 119 GGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGL-------AGHTVFLPWDE 171
Query: 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW 225
+ + + + M EA G L + ++ E
Sbjct: 172 ALA-FATVLHAHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLET 214
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 42/210 (20%), Positives = 69/210 (32%), Gaps = 33/210 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
T G GL +MG +A N+ GF ++V+NR +K V G S
Sbjct: 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVA----------LGARQASSP 51
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERR 114
+ I ++ + V + G ID E +
Sbjct: 52 AEVCAACDITIAMLADPAAAR------EVCFGANGVLEGIGGGRGYIDMSTVDDETSTAI 105
Query: 115 QKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCV 173
AV G +L VSG ++ A G ++ G + + G
Sbjct: 106 GAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAAL-------GKKC 158
Query: 174 TYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
++G+ G G +K++ N I M + E
Sbjct: 159 LHLGEVGQGARMKLVVNMIMGQMMTALGEG 188
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 33/210 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+G GL +MG+ +++N+ + GF ++V+NRT SK DE VE +G ES
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------HGASVCESP 71
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERR 114
I+K + I ++ V + +G ID E + +
Sbjct: 72 AEVIKKCKYTIAMLSDPCAALS------VVFDKGGVLEQICEGKGYIDMSTVDAETSLKI 125
Query: 115 QKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCV 173
+A+ G ++ VSG ++ A G ++ G ++ + G
Sbjct: 126 NEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVL-------GKRS 178
Query: 174 TYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
Y+G+ G+G +K+I N I M +E
Sbjct: 179 FYLGQVGNGAKMKLIVNMIMGSMMNAFSEG 208
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 37/218 (16%), Positives = 72/218 (33%), Gaps = 47/218 (21%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
+IG GL +MG + N+ + G ++V+NRT K D ++ G +
Sbjct: 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQE----------GARLGRT 79
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENT-- 111
+ + V P + + G C +D +
Sbjct: 80 PAEVVSTCDITFACV--SDPKA----AKDLVLGPSGVLQGIRPGKCYVD-------MSTV 126
Query: 112 -----ERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQ 165
+ + G +L VSG ++ + G ++ G Y+ +
Sbjct: 127 DADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAM--- 183
Query: 166 VPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
G ++G+ G+ + +I N ++ M IAE
Sbjct: 184 ----GKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEG 217
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 33/209 (15%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+ G GL +MG +A N+ + G ++++NR+ K +E G +
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL----------GAERAATPC 52
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERRQ 115
++ V ++ + + V + +G +D ++R
Sbjct: 53 EVVESCPVTFAMLADPAAAE------EVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIG 106
Query: 116 KAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT 174
AV G +L VSG ++ A G ++ G Y K+ G +
Sbjct: 107 VAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKM-------GKKII 159
Query: 175 YVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
++G G G +K++ N + G M E
Sbjct: 160 HLGDVGKGAEMKLVVNMVMGGMMACFCEG 188
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 6e-16
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 19/202 (9%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
Q ++G GL MG +A + E ++VY+ + E G +S
Sbjct: 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA----------GATLADS 64
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
+ I ++ V + + L+ + + G I + +
Sbjct: 65 VADVAAADLIHITVLDDAQ-VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARD 123
Query: 123 LLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGS 181
+ + VSGG A G + M G E Y+ I+ AA V + G+ G+
Sbjct: 124 IHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAV-------VIHAGEPGA 176
Query: 182 GNFVKMIHNGIEYGDMQLIAEA 203
G +K+ N + + EA
Sbjct: 177 GTRMKLARNMLTFTSYAAACEA 198
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 5e-15
Identities = 41/212 (19%), Positives = 69/212 (32%), Gaps = 33/212 (15%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
+G+ GL MG A + G + + S
Sbjct: 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE---------GACGAAAS 57
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTER 113
+++LV + V V M+ G ++ + +
Sbjct: 58 AREFAGVVDALVILVVNAAQVR------QVLFGEDGVAHLMKPGSAVMVSSTISSADAQE 111
Query: 114 RQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPC 172
A+ L L L VSGG A G ++M GS A+ ++ +L VA+ V
Sbjct: 112 IAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNV------ 165
Query: 173 VTYVG-KGGSGNFVKMIHNGIEYGDMQLIAEA 203
+ G+G+ VK+IH + + AEA
Sbjct: 166 -YRISDTPGAGSTVKIIHQLLAGVHIAAAAEA 196
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 9e-15
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+IG GL MG+ +A+N+ ++G + ++ + V V + G E+
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ----------GAQACENN 54
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERR 114
+I + V +V + G I+D + +T +
Sbjct: 55 QKVAAASDIIFTSLPNAGIV------ETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKM 108
Query: 115 QKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCV 173
K AE G+ Y+ VSGG +GA G ++M G S ++ I+ +L + +
Sbjct: 109 AKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDI------- 161
Query: 174 TYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
+VG G+G+ VK+++N + +M +AEA
Sbjct: 162 YHVGDTGAGDAVKIVNNLLLGCNMASLAEA 191
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 9e-15
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 34/209 (16%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G GL +MG +A+N+A G + V + L G + E+
Sbjct: 5 KLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADE-----------LLSLGAVNVETAR 53
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERRQ 115
+ +I ++V V+ V +G I+D + T+R
Sbjct: 54 QVTEFADIIFIMVPDTPQVED------VLFGEHGCAKTSLQGKTIVDMSSISPIETKRFA 107
Query: 116 KAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT 174
+ V E+G YL VSGGE GAR G S+M GG + + ++ + + G +T
Sbjct: 108 QRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDIL-------GKNIT 160
Query: 175 YVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
VG G G K+ + I +++ ++EA
Sbjct: 161 LVGGNGDGQTCKVANQIIVALNIEAVSEA 189
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-14
Identities = 55/221 (24%), Positives = 92/221 (41%), Gaps = 22/221 (9%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
++ GL MG +A ++A + + V+NRT K E E
Sbjct: 2 EKVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEA-----------VP 49
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
+ + + RVI + V + + L Y+ +G +D + E + R + + E G+
Sbjct: 50 LERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGV 109
Query: 124 LYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSG 182
YL VSGG GA G ++M GG EA + + L V +VG G+G
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL--------AYAKKVVHVGPVGAG 161
Query: 183 NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223
+ VK I+N + ++ E L G +S E+ +V +
Sbjct: 162 HAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVIN 201
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 2e-14
Identities = 46/209 (22%), Positives = 81/209 (38%), Gaps = 33/209 (15%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+G GL MG +A N+ + G+P+ +Y+ E + G S
Sbjct: 2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA----------GEQVVSSPA 51
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVY---------MEKGDCIIDGGNEWYENTERRQ 115
+K II ++ + Y ++KG +ID ++
Sbjct: 52 DVAEKADRIITMLPTSINA------IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELA 105
Query: 116 KAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVT 174
K V ++G +++ VSGG AR G + M GG + + +++L + + V
Sbjct: 106 KEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNV-------V 158
Query: 175 YVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203
Y G G+G K+ +N + M AEA
Sbjct: 159 YCGAVGTGQAAKICNNMLLAISMIGTAEA 187
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 5e-11
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 34/212 (16%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPE 61
++G G +A + + G ++ Y+ +++ RA++ G
Sbjct: 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAE--SWRPRAEELG------VSCKA 75
Query: 62 SFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT------ERRQ 115
S + VI LV A + ++ + ++ +G D +
Sbjct: 76 SVAEVAGECDVIFSLVTAQAALEV-AQQAGPHLCEGALYADF------TSCSPAVKRAIG 128
Query: 116 KAVAE--LGLLYLGMGVSGGEEGARYG-PSLMPGGSFEAYKHIEDILLKVAAQVPDSGPC 172
++ Y + V + + P ++ G + ++
Sbjct: 129 DVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVDGDGARR---FQAAFTLYGCRI------ 179
Query: 173 VTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAY 204
G+ G +KM + + G L EA
Sbjct: 180 EVLDGEVGGAALLKMCRSAVLKGLEALFLEAL 211
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 1e-09
Identities = 36/237 (15%), Positives = 73/237 (30%), Gaps = 39/237 (16%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKV---DETVERAKQEGNLPLYGFH 58
T I G Q++A + + ++ Y+ + RA + G
Sbjct: 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELG-------V 76
Query: 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT------E 112
+P V I V++ LV G+ + + ++ ID N+
Sbjct: 77 EPLDDVAGIACADVVLSLV-VGAATKAVAASAAPHLSDEAVFIDL------NSVGPDTKA 129
Query: 113 RRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPC 172
A+A ++ V ++ G +VA ++ G
Sbjct: 130 LAAGAIATGKGSFVEGAVMARVPPYAEKVPILVAGRRAV---------EVAERLNALGMN 180
Query: 173 VTYV-GKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKG 228
+ V G + +KMI + + G L+ EA + G +++ +
Sbjct: 181 LEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-----VTERILDSVQET 232
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 44/386 (11%), Positives = 109/386 (28%), Gaps = 127/386 (32%)
Query: 153 KHIEDILLKVAA--------QVPDSGPCVTYV-------GKGGSGNFVKMIHN------- 190
K ++D+ + + D+ + + FV+ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95
Query: 191 ---GIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWN--KGELLSFLIEITADIFGIK 245
E ++ Y ++ +L N+ QVF+++N + + L + +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYND--NQVFAKYNVSRLQPYLKLRQ------ALL 145
Query: 246 DDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAK 305
+ + ++ +D G+ G+GK V A D+ +V+
Sbjct: 146 ELRPAKNVL---ID--GVLGSGKTWV--ALDV------------------CLSYKVQCKM 180
Query: 306 VFR----SSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLK 361
F+ + + + + ++ Q L ++ + + +I+
Sbjct: 181 DFKIFWLNLK--------NCNSPETVLEMLQKLLYQIDPNWTSRSD--HSSNIKLRIHSI 230
Query: 362 LGELTRIWKGGCIIRA-IFLD-----RIKKAYD---------RNPDLANVLV-------- 398
EL R+ K + L + A++ R + + L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 399 ---------DPE----FAKEIIERQSAWRRVVC----LAINS-GISTPGMSSSLAYFDTY 440
E K + R R V ++ S ++ +
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 441 RRERLPANLVQA---------QRDYF 457
++L ++++ R F
Sbjct: 351 NCDKL-TTIIESSLNVLEPAEYRKMF 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 9e-06
Identities = 67/521 (12%), Positives = 148/521 (28%), Gaps = 156/521 (29%)
Query: 6 IGLAGLAVMG-QNLALNIA-----EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHD 59
+ + G+ G +AL++ + ++ + + L +
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDC--IIDGGNEWYENTER---- 113
S ++ I ++ ++ L +C ++ N
Sbjct: 213 WTSRSDHSSNIKLRIHSIQ------AELRRLLKSKPYENCLLVLL--NVQNAKAWNAFNL 264
Query: 114 --------RQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQ 165
R K V + +L + + +L P E + +LLK
Sbjct: 265 SCKILLTTRFKQVTD----FLSAATTTHISLDHHSMTLTPD---EV----KSLLLKYLDC 313
Query: 166 VPDSGP---CVTYVGKGGSGN------FVKMIHNGI---EYGDMQLIAEAYDVLK-SVGK 212
P P + N + I +G+ + + +++ S+
Sbjct: 314 RPQDLPREVL--------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 213 LSNEELQQVFSEWNKGELLSFLIE---ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKW 269
L E +++F + LS I + + V V++K +
Sbjct: 366 LEPAEYRKMF------DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE- 418
Query: 270 TVQQAADLSVAAPTI----------ESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQ 319
+Q + +++ P+I E +L + + K F S +
Sbjct: 419 --KQPKESTISIPSIYLELKVKLENEYALHRSIV-----DHYNIPKTFDSDDLI------ 465
Query: 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIF 379
+D Y S+ G +L + E+ L R +F
Sbjct: 466 ----PPYLDQ-----Y---FYSHI-GHHLKNIEHPER-MTL--------------FRMVF 497
Query: 380 LD------RIKK---AYDRNPDLANVLVDPEFAKE-IIERQSAWRRVVCLAIN------- 422
LD +I+ A++ + + N L +F K I + + R+V ++
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 423 SGISTPGMS---------SSLAYFDTYRRERLPANLVQAQR 454
+ I + + + ++ Q QR
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHK---------QVQR 589
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 26/208 (12%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
R+G G + Q LA + +G + S T+ERA+ G E V
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRS--PSTIERARTVG-----VTETSEEDV 54
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+S V+I V G + +D N E + + G
Sbjct: 55 YSCP---VVISAVTPGVALGA---ARRAGRHVRGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK-GGSGN 183
++ + G ++ G ++ G + G+ G +
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAE----------EFMKLNRYGLNIEVRGREPGDAS 156
Query: 184 FVKMIHNGIEYGDMQLIAEAYDVLKSVG 211
+KM+ + G L+ E +G
Sbjct: 157 AIKMLRSSYTKGVSALLWETLTAAHRLG 184
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 1e-04
Identities = 33/211 (15%), Positives = 63/211 (29%), Gaps = 22/211 (10%)
Query: 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHD 59
+ T I L G + NLA + KGF I VY+RT E ++ + D
Sbjct: 8 IEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQK------VEAEYTTD 61
Query: 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA 119
+ ++ S + ++ + + ++ + V
Sbjct: 62 LAEVN----PYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIP--MNVWEGHVP 115
Query: 120 ELGLLYLGMGVSGGEEGARYG-PSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178
G+ Y S E P + S E ++ I ++ +V Y
Sbjct: 116 HYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRV--------YDAD 167
Query: 179 GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS 209
+ + + A A ++LK
Sbjct: 168 SEQRKSLHLAAVFTCNFTNHMYALAAELLKK 198
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 484 | |||
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.98 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.97 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.97 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.97 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.97 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 99.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 99.96 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 99.95 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.95 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.94 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.94 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.93 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 99.93 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.93 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.92 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.92 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.91 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.9 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.88 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.87 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.85 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.85 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.84 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.84 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.82 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.82 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.82 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.82 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.81 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.81 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.81 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.8 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.8 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.8 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.79 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.76 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.76 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.75 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.74 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.74 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.73 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.73 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.71 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.71 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.71 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.71 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.7 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.68 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.67 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.67 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.47 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.65 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.65 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.64 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.63 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.62 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.62 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.61 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.61 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.6 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.58 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.58 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.56 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.55 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.51 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.47 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.46 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.4 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.35 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.3 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 99.3 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.28 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.27 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.26 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.26 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.23 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.22 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.21 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.21 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.2 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.2 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.19 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.18 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.18 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.17 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.17 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.17 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.16 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.15 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.15 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.15 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.15 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.14 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.14 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.14 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.12 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.12 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.11 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.08 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.07 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.06 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.06 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.03 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.02 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.99 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.98 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.98 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.97 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.94 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.9 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.89 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.87 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.85 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.82 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.76 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.74 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.74 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.72 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.71 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.7 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.7 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.7 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 98.7 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.69 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.69 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.67 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.64 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 98.64 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 98.64 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.63 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.61 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 98.6 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.6 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.6 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 98.6 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.59 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.58 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.56 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.56 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.55 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.55 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.55 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 98.54 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.54 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.53 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 98.52 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.51 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.51 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 98.49 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.47 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.47 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 98.45 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.44 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.44 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.43 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 98.42 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 98.41 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.41 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 98.41 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 98.41 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.4 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.39 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 98.39 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.39 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.38 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.37 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 98.36 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.34 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 98.34 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 98.34 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 98.34 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 98.33 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 98.31 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 98.3 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.3 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.3 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.29 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.29 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 98.29 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.29 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 98.27 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 98.27 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.27 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.26 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 98.25 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 98.24 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 98.24 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.23 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 98.22 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 98.21 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 98.21 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.21 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 98.2 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 98.2 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 98.2 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 98.2 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 98.19 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.19 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 98.19 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 98.18 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 98.16 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.14 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 98.13 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 98.13 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 98.13 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.11 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 98.11 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 98.11 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 98.09 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 98.09 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 98.08 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.06 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 98.06 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.05 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.05 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 98.04 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 98.04 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 98.03 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.0 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.99 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.98 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.98 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.97 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.94 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.93 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 97.92 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.91 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.91 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.9 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.88 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.88 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.88 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.87 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.85 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.85 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.85 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.85 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.85 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.85 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 97.84 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 97.84 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.8 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.8 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 97.79 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.77 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.76 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.74 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 97.73 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 97.72 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 97.72 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 97.71 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.71 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.71 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.7 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.68 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.68 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.67 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.67 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 97.67 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 97.64 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.6 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.56 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 97.55 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.53 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.49 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.49 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.44 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 97.41 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.4 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.39 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.38 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.37 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 97.33 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 97.31 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.31 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 97.31 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.3 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 97.3 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.29 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.28 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 97.27 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 97.26 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.26 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.26 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.23 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.19 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 97.18 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.13 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.13 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.12 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 97.09 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 97.07 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.07 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.04 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 97.04 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 97.04 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.99 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.98 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.98 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.97 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.97 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 96.96 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.95 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.93 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 96.9 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.89 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.89 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 96.88 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 96.87 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.86 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.86 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 96.86 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.83 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.81 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.8 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 96.8 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.77 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.76 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.75 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.73 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 96.73 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.7 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.7 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 96.67 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 96.65 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.59 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 96.52 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 96.5 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 96.47 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.46 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 96.43 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 96.41 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 96.39 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 96.3 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 96.25 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.24 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 96.16 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 96.16 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 96.13 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.12 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 96.11 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.09 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.08 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 96.07 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 96.02 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 95.96 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 95.94 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 95.94 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.86 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.86 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 95.85 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 95.84 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.83 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.83 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 95.83 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.79 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 95.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 95.73 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.72 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 95.69 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 95.68 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 95.67 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.65 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 95.65 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 95.54 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 95.53 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.53 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 95.48 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 95.47 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 95.44 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.38 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 95.38 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 95.37 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.37 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 95.37 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 95.36 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 95.35 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 95.35 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 95.35 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 95.34 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.33 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 95.31 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 95.27 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 95.26 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.23 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 95.21 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 95.18 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.15 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 95.15 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 95.13 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 95.11 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 95.08 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 95.04 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 95.03 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 95.02 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 94.97 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 94.96 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 94.96 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 94.93 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.92 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 94.9 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 94.9 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 94.89 | |
| 2d2i_A | 380 | Glyceraldehyde 3-phosphate dehydrogenase; rossmann | 94.88 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 94.87 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 94.81 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 94.78 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 94.76 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 94.75 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 94.74 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 94.73 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 94.73 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 94.7 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 94.69 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 94.69 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 94.67 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 94.67 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 94.67 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 94.67 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 94.66 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.62 | |
| 3a06_A | 376 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M | 94.62 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 94.62 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 94.6 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 94.57 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 94.56 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 94.55 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 94.54 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 94.53 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 94.52 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 94.52 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.52 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 94.5 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 94.48 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.48 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 94.46 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 94.45 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 94.44 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 94.42 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.41 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 94.37 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.36 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 94.35 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 94.34 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 94.32 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 94.32 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 94.32 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 94.31 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.3 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 94.3 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 94.27 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 94.23 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 94.23 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 94.22 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 94.22 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 94.2 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 94.19 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.18 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 94.17 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 94.13 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 94.11 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 94.07 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 94.07 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 94.04 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 94.03 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 94.02 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 93.99 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 93.99 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.98 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 93.98 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 93.97 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 93.97 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 93.96 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.96 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 93.95 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 93.95 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 93.95 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 93.94 | |
| 1vm6_A | 228 | DHPR, dihydrodipicolinate reductase; TM1520, struc | 93.93 |
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-113 Score=895.67 Aligned_cols=475 Identities=48% Similarity=0.844 Sum_probs=441.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|.+|+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+.. +.++..+.+++++++.++.+|+||+|||++
T Consensus 2 ~~~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~--g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~ 79 (484)
T 4gwg_A 2 NAQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK--GTKVVGAQSLKEMVSKLKKPRRIILLVKAG 79 (484)
T ss_dssp -CCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT--TSSCEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred CCCCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccC--CCceeccCCHHHHHhhccCCCEEEEecCCh
Confidence 556799999999999999999999999999999999999998875422 113556789999999777899999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
.+++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++++|+
T Consensus 80 ~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~~im~GG~~ea~~~v~pll~ 159 (484)
T 4gwg_A 80 QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQ 159 (484)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCCeeecCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
.++.++.+++||++|+|+.|+||++||+||+++++++++++|++.++++ .| +|++++.++|+.|+.|.+.||+++++.
T Consensus 160 ~ig~~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~G-ld~~~l~~v~~~w~~G~~~S~l~e~~~ 238 (484)
T 4gwg_A 160 GIAAKVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-MAQDEMAQAFEDWNKTELDSFLIEITA 238 (484)
T ss_dssp HHSCBCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHH
T ss_pred HhcCcccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHcCCCccchHHHHHH
Confidence 9999865788999999999999999999999999999999999999999 87 999999999999999999999999999
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCccccc
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQ 319 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~ 319 (484)
+++..+| +.+++++|.|+|.++|||||+||+++|.++|||+|+|++||++|++|++|++|..+++.|++|.+. ..
T Consensus 239 ~~l~~~D-~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~a~~~l~~~~~~----~~ 313 (484)
T 4gwg_A 239 NILKFQD-TDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQKF----QF 313 (484)
T ss_dssp HHHHCBC-TTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHTTCCCC--C----CC
T ss_pred HHHhcCC-ccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHHHHhhcCCCCcc----cc
Confidence 9998765 456789999999999999999999999999999999999999999999999999999999887532 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVD 399 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~ 399 (484)
..+..+|++|||||+||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|++||+++|||+|
T Consensus 314 ~~~~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~ll~~ 393 (484)
T 4gwg_A 314 DGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPELQNLLLD 393 (484)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTCSCGGGS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCchhhhcC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCc-cccccccC
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGS-FHTEWFKI 478 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~-~h~~w~~~ 478 (484)
+.|.+.+++..++||+||..|++.|+|+|++|+||+||++||++++|+|||||||||||+|||+|+|++|. ||++|+++
T Consensus 394 ~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~~~lpanliqaqRd~FGaH~~~r~d~~g~~~h~~w~~~ 473 (484)
T 4gwg_A 394 DFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRHEMLPASLIQAQRDYFGAHTYELLAKPGQFIHTNWTGH 473 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHCCCEEETTEEEEEECCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHhhCCcceEecCCCCCccccCcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995 89999975
Q ss_pred CccCC
Q 011501 479 AKQSK 483 (484)
Q Consensus 479 ~~~~~ 483 (484)
+.+++
T Consensus 474 ~~~~~ 478 (484)
T 4gwg_A 474 GGTVS 478 (484)
T ss_dssp -----
T ss_pred CCCcc
Confidence 55543
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-103 Score=830.22 Aligned_cols=470 Identities=49% Similarity=0.873 Sum_probs=435.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-HhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|||||+|.||.+||.+|+++|++|++|||++++++.+.+ .... .++..+.+++++++.++++|+||+|||++.+
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~---~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 87 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKG---KSIIGATSIEDFISKLKRPRKVMLLVKAGAP 87 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTT---SSEECCSSHHHHHHTSCSSCEEEECCCSSHH
T ss_pred CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccC---CCeEEeCCHHHHHhcCCCCCEEEEEcCChHH
Confidence 58999999999999999999999999999999999998876 3110 1367788999999877789999999999889
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
++++++++.+.+++|++|||+||+.+.++.++.+.+.++|++|+++||+|++.++..|+++|+||++++++.++++|+.+
T Consensus 88 v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~~im~gg~~e~~~~v~~ll~~~ 167 (497)
T 2p4q_A 88 VDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSI 167 (497)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCCeEEecCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998988999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhhccc
Q 011501 163 AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEITADI 241 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 241 (484)
+.+. |++||+.++|+.|+|+++||++|++.++.+++++|++.++++ .| ++++++.+++..|+.|.+.||+++++.++
T Consensus 168 g~~~-dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 245 (497)
T 2p4q_A 168 SAKS-DGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGG-FTDKEISDVFAKWNNGVLDSFLVEITRDI 245 (497)
T ss_dssp SCEE-TTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTTTTCBHHHHHHHHH
T ss_pred cCcc-CCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHHhcCCccccHHHHHHHHH
Confidence 9864 567899999999999999999999999999999999999999 58 99999999999999999999999999888
Q ss_pred cccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCC-CCcccccc
Q 011501 242 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGI-GDVLAEQT 320 (484)
Q Consensus 242 l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~~~~ 320 (484)
+..+| +++.|.++.+.|.++||+||+|+++.|.++|+|+|++..+|++|++|.++++|..+++++.+|.. . ...
T Consensus 246 l~~~d-~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~gp~~~~----~~~ 320 (497)
T 2p4q_A 246 LKFDD-VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAVFARCLSALKNERIRASKVLPGPEVPK----DAV 320 (497)
T ss_dssp HTCBC-TTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCT----TSC
T ss_pred HhcCC-CCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHHHHhhhcCCCCccc----ccc
Confidence 77654 56679999999999999999999999999999999999999999999999999999999988752 1 233
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+|+
T Consensus 321 ~~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~ 400 (497)
T 2p4q_A 321 KDREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNK 400 (497)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceec--------cCCCccc
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERV--------DMSGSFH 472 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~--------d~~~~~h 472 (484)
.|.+.+++..++|||||..|++.|||+|++++||+||++||++++|+|||||||||||+|||+|+ |++|.||
T Consensus 401 ~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~~~~a~liqa~Rd~FG~H~~~r~~~~~~~~~~~~~~~h 480 (497)
T 2p4q_A 401 FFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSERLPANLLQAQRDYFGAHTFRVLPECASDNLPVDKDIH 480 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHSCCCBCCCGGGCCSSSCTTSCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhHHHHHHHHhcCCcceeeccccccccCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccCCccCC
Q 011501 473 TEWFKIAKQSK 483 (484)
Q Consensus 473 ~~w~~~~~~~~ 483 (484)
++|++++.+++
T Consensus 481 ~~w~~~~~~~~ 491 (497)
T 2p4q_A 481 INWTGHGGNVS 491 (497)
T ss_dssp CCCC-------
T ss_pred cccCCCCCccc
Confidence 99987555543
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-103 Score=825.87 Aligned_cols=467 Identities=51% Similarity=0.889 Sum_probs=436.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|++++|||||+|.||.+||.+|+++|++|++|||++++++++.+..... ++..+.+++++++.++++|+||+|||++
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVil~Vp~~ 89 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGK---KLVPYYTVKEFVESLETPRRILLMVKAG 89 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTS---CEEECSSHHHHHHTBCSSCEEEECSCSS
T ss_pred cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCC---CeEEeCCHHHHHhCCCCCCEEEEECCCH
Confidence 6678999999999999999999999999999999999999887652101 3677889999998777799999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
.+++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++||+..++.|+++|+||++++++.++++|+
T Consensus 90 ~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 169 (480)
T 2zyd_A 90 AGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILT 169 (480)
T ss_dssp SHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCCeEEecCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999998888888999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 161 KVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
.++.+..|++||+.++|+.|+|+++||++|++.++.+++++|++.++++ .| ++++++.+++..|+.|.+.|++++++.
T Consensus 170 ~~g~~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lG-l~~~~~~~l~~~w~~g~~~s~l~~~~~ 248 (480)
T 2zyd_A 170 KIAAVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLN-LTNEELAQTFTEWNNGELSSYLIDITK 248 (480)
T ss_dssp HHSCBCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTTCBHHHHHHH
T ss_pred HHhccccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 9998644688999999999999999999999999999999999999999 68 999999999999999999999999999
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCccccc
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQ 319 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~ 319 (484)
++++.++ +++++.++.+.|.+.||+||+|+.+.|.++|+|+|++.+++++|++|.++++|..+++++.+|.. ..
T Consensus 249 ~~l~~~d-~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R~~~~~~~~g~~~-----~~ 322 (480)
T 2zyd_A 249 DIFTKKD-EDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITESVFARYISSLKDQRVAASKVLSGPQA-----QP 322 (480)
T ss_dssp HHHHCBC-TTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHHHHHHTTCCCCCC-----CC
T ss_pred HHHhcCC-CCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHHHHHHhhhcchhhhHHhhcccCCCCC-----CC
Confidence 9887654 56679999999988999999999999999999999999999999999999999999999988753 23
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVD 399 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~ 399 (484)
..+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+|||+|
T Consensus 323 ~~~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~ 402 (480)
T 2zyd_A 323 AGDKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLA 402 (480)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcC
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCcccccccc
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 477 (484)
+.|.+.+++..++|||||..|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 403 ~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~~~~~l~qa~Rd~FG~H~~~r~~~~~~~h~~w~~ 480 (480)
T 2zyd_A 403 PYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGAHTYKRIDKEGVFHTEWLD 480 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSCSCBCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCCcceecCCCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999974
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-101 Score=813.51 Aligned_cols=468 Identities=50% Similarity=0.890 Sum_probs=435.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|++++|||||+|.||.+||.+|+++|++|.+|||++++++.+.+..... ++..+.+++++++.++++|+||+|||++
T Consensus 3 m~~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~---gi~~~~s~~e~v~~l~~aDvVilavp~~ 79 (474)
T 2iz1_A 3 MAQANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK---NLVFTKTLEEFVGSLEKPRRIMLMVQAG 79 (474)
T ss_dssp CTTBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS---CEEECSSHHHHHHTBCSSCEEEECCCTT
T ss_pred CCCCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCC---CeEEeCCHHHHHhhccCCCEEEEEccCc
Confidence 5567899999999999999999999999999999999999887653111 3677889999988777799999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
.+++++++++.+.+++|++|||++|+.+.++.++.+.+.++|++|+++|++|++..+..|+++|+||++++++.++++|+
T Consensus 80 ~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~ 159 (474)
T 2iz1_A 80 AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGPSMMPGGQKEAYDLVAPIFE 159 (474)
T ss_dssp HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCCCEEEEECHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCCeEEecCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999998888888888999999999999999999998889999999999999999
Q ss_pred HHhccCC-CCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH-hCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 161 KVAAQVP-DSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKS-VGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 161 ~i~~~~~-~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~-~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
.++.++. +++||+.++|+.|+|+++||++|++.++.+++++|++.++++ .| ++++++.+++..|+.|.+.||+++++
T Consensus 160 ~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~G-l~~~~~~~l~~~w~~g~~~s~l~~~~ 238 (474)
T 2iz1_A 160 QIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILG-LSNAEIQAIFEEWNEGELDSYLIEIT 238 (474)
T ss_dssp HHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHH
T ss_pred HHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHhcCCCccccHHHhh
Confidence 9998631 578999999999999999999999999999999999999999 68 99999999999999999999999999
Q ss_pred ccccccccCCCCc-hhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCccc
Q 011501 239 ADIFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLA 317 (484)
Q Consensus 239 ~~~l~~~~~~~~~-~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~ 317 (484)
.+++..+| +.++ +.++.+.|.+.||+||+|+.+.|.++|+|+|++.++|++|++|.+|++|..+++.+.+|..
T Consensus 239 ~~~l~~~d-~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~~~~~~~~g~~~----- 312 (474)
T 2iz1_A 239 KEVLKRKD-DEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITESVFARYISTYKDERVKASKVLSGPAL----- 312 (474)
T ss_dssp HHHTTCBC-SSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCC-----
T ss_pred hhHhhcCC-CCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhHHhhhccCCCCC-----
Confidence 98876544 5455 8999999999999999999999999999999999999999999999999999999988753
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 318 EQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 318 ~~~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
....+++||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+++|||
T Consensus 313 ~~~~~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~ 392 (474)
T 2iz1_A 313 DFSGDKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLL 392 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhh
Confidence 23458899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCcccccccc
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 477 (484)
+|+.|.+.+++..++|||||..|++.|+|+|++++||+||++||++++|+|||||||||||+|||+|+|++|.||++|++
T Consensus 393 ~~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fg~h~~~r~~~~~~~h~~w~~ 472 (474)
T 2iz1_A 393 LDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSENLPANLIQAQRDYFGAHTYERTDKAGIFHYDWYT 472 (474)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSSCTHHHHHHHHHHHHCCCBCBSSSSSCBCCCCC-
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCchhhHHHHHHHhcCCccceecCCCCeeeccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q 011501 478 I 478 (484)
Q Consensus 478 ~ 478 (484)
+
T Consensus 473 ~ 473 (474)
T 2iz1_A 473 E 473 (474)
T ss_dssp -
T ss_pred C
Confidence 4
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-100 Score=802.94 Aligned_cols=471 Identities=49% Similarity=0.851 Sum_probs=434.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH-HhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE-RAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~-~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|||||+|.||.+||.+|+++|++|++|||++++++.+.+ ... +.++..+.+++++++.++.+|+||+|||++.+
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~---g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~ 79 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAK---GTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTT---TSSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcccc---CCCeEEeCCHHHHHhhccCCCEEEEeCCChHH
Confidence 58999999999999999999999999999999999988876 211 01367788999998755569999999999878
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++..+..|+++++||++++++.++++|+.+
T Consensus 80 v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~~i~~gg~~e~~~~v~~ll~~~ 159 (482)
T 2pgd_A 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (482)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCCeEEeCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988888888888899999999999999999999889999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCHHHHHHHHHhhccCcchhhhhhhhccc
Q 011501 163 AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLSNEELQQVFSEWNKGELLSFLIEITADI 241 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~ 241 (484)
+.++.+++||+.++|+.|.|+++||++|++.++.+++++|++.++++. | ++++++.+++..|+.+.+.|++.+++.++
T Consensus 160 g~~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G-~~~~~~~~~~~~w~~g~~~S~l~~~~~~~ 238 (482)
T 2pgd_A 160 AAKVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLG-LGHKEMAKAFEEWNKTELDSFLIEITASI 238 (482)
T ss_dssp SCBCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHHHHHHTTTTTCBHHHHHHHHH
T ss_pred hhhccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cCHHHHHHHHHHhcCCCcCchHHHHHhHH
Confidence 987545689999999999999999999999999999999999999999 8 99999999999999999999999999887
Q ss_pred cccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCccccccc
Q 011501 242 FGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTV 321 (484)
Q Consensus 242 l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~ 321 (484)
+..+ ++++++.++.+.+.++||+||+|+++.|+++|+|+|++.++|++|+.|.+|++|..+++.+++|... ....
T Consensus 239 l~~~-d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~~~~~~~~g~~~~----~~~~ 313 (482)
T 2pgd_A 239 LKFQ-DADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI----PFEG 313 (482)
T ss_dssp HHCB-CTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC----CCCS
T ss_pred hhcc-CCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHHHHhhhcCCCCcc----ccCc
Confidence 7665 4667789999999999999999999999999999999988899999999999999999999887521 2335
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchh
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPE 401 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~ 401 (484)
+.+||+|||||||||++|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|+|+||++|+.
T Consensus 314 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~ 393 (482)
T 2pgd_A 314 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDF 393 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCC-ccccccccCCc
Q 011501 402 FAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSG-SFHTEWFKIAK 480 (484)
Q Consensus 402 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~-~~h~~w~~~~~ 480 (484)
|.+.+++.+++|||||..|++.|+|+|++++||+||++|+++++|+|||||||||||+|||+|+|+|| .||++|++++.
T Consensus 394 ~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~~~~~~~l~qa~rd~fG~h~~~r~~~~~~~~h~~w~~~~~ 473 (482)
T 2pgd_A 394 FKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHGG 473 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCCcchhHHHHHHhhcCCceeeecCCCCCceecccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 99999987555
Q ss_pred cCC
Q 011501 481 QSK 483 (484)
Q Consensus 481 ~~~ 483 (484)
+++
T Consensus 474 ~~~ 476 (482)
T 2pgd_A 474 SVS 476 (482)
T ss_dssp ---
T ss_pred ccc
Confidence 543
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-97 Score=780.80 Aligned_cols=463 Identities=37% Similarity=0.646 Sum_probs=429.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh----hcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~----~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|||||+|.||.+||.+|+++|++|++|||++++++.+.+... .. ++..+.+++++++.++++|+||+|||+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~---~i~~~~~~~e~v~~l~~aDvVilaVp~ 78 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG---NLKAFETMEAFAASLKKPRKALILVQA 78 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGG---GEEECSCHHHHHHHBCSSCEEEECCCC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCC---CeEEECCHHHHHhcccCCCEEEEecCC
Confidence 58999999999999999999999999999999999998876521 01 256788999999876679999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 159 (484)
+.+++++++++.+.+.+|++|||++|+.+.++.++.+.+.+.|++|+++|++|++..++.|+++++||++++++.++++|
T Consensus 79 ~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll 158 (478)
T 1pgj_A 79 GAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIV 158 (478)
T ss_dssp SHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCCeEeccCCHHHHHHHHHHH
Confidence 87899999999999999999999999999888888888888899999999999999999999888999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhc-cCcchhhhhhhh
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWN-KGELLSFLIEIT 238 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~-~g~~~s~l~~~~ 238 (484)
+.++.+..+++||+.++|+.|+|+++|+++|++.++.+++++|++.++++.| ++++++.+++..|+ .|.+.|++.+++
T Consensus 159 ~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G-~~~~~~~~l~~~w~~~g~~~s~l~~~~ 237 (478)
T 1pgj_A 159 EAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 237 (478)
T ss_dssp HHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHH
T ss_pred HHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhccCCCcCchHHHhh
Confidence 9999864467899999999999999999999999999999999999999988 99999999999999 889999999999
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCC-CCccc
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGI-GDVLA 317 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~-~~~~~ 317 (484)
.+++..+| +.+.+.++.+.|.++|||||+|+++.|+++|+|+|++.++|++|++|..+++|..+++++++|.. .
T Consensus 238 ~~~l~~~d-~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~~~~~~l~~~~~~~---- 312 (478)
T 1pgj_A 238 IAAARAKD-KDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSP---- 312 (478)
T ss_dssp HHHHHCBC-TTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCC----
T ss_pred chhhhcCC-CCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHHHHHHhcCCCCccc----
Confidence 88876554 43348999999999999999999999999999999999999999999999999999999987752 1
Q ss_pred ccc-cch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCC
Q 011501 318 EQT-VDK---KKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDL 393 (484)
Q Consensus 318 ~~~-~~~---~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~ 393 (484)
... .++ ..|+++|++|+|++++++|+|||++|++++++|+|+||+.+|+++||+||||||.||+.|.++|+++|++
T Consensus 313 ~~~~~~~~~~~~~~~~~~~al~~~~~~~yaqg~~~~~~a~~~~~w~l~~~~~a~~wr~gciir~~~l~~i~~a~~~~~~~ 392 (478)
T 1pgj_A 313 GYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNI 392 (478)
T ss_dssp CCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTC
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCCceeeHHHHHHHHHHHhcCCCh
Confidence 122 355 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhHHHHHHhhhhhHHHHHHH-HHHcCCChHHHHHHHHHHHhhcCCCcc-hhHHHHHhhccCCccceeccCCCcc
Q 011501 394 ANVLVDPEFAKEIIERQSAWRRVVCL-AINSGISTPGMSSSLAYFDTYRRERLP-ANLVQAQRDYFGAHTYERVDMSGSF 471 (484)
Q Consensus 394 ~~ll~~~~~~~~~~~~~~~~~~~v~~-a~~~g~p~p~~~~al~~~~~~~~~~~~-~~~i~a~rd~fG~h~~~r~d~~~~~ 471 (484)
.||| +.|.+.+++.+++||++|.. |++.|+|+|++|+||+|||+||+++|| +|||||||||||+|||+|+|++|.|
T Consensus 393 ~~l~--~~~~~~~~~~~~~~r~~v~~~~~~~g~~~p~~~~~l~y~d~~~~~~l~~~~l~qaqrd~fg~h~~~~~~~~~~~ 470 (478)
T 1pgj_A 393 SNLM--CAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRE 470 (478)
T ss_dssp SCTT--GGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEE
T ss_pred hhHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccccCCcchhHHHHHHhccCceeeecCCCCce
Confidence 9999 99999999999999999999 999999999999999999999999999 9999999999999999999999999
Q ss_pred cccccc
Q 011501 472 HTEWFK 477 (484)
Q Consensus 472 h~~w~~ 477 (484)
|++|++
T Consensus 471 h~~w~~ 476 (478)
T 1pgj_A 471 SFQWPE 476 (478)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 999986
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-52 Score=424.47 Aligned_cols=321 Identities=30% Similarity=0.481 Sum_probs=262.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|||||+|.||.+||.+|+++|++|++|||++++++.+.+.+ +..+.+++++++..+.+|+||+|||++ +
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~a~~~DvVi~~vp~~-~ 93 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREG-------IAGARSIEEFCAKLVKPRVVWLMVPAA-V 93 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CBCCSSHHHHHHHSCSSCEEEECSCGG-G
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CEEeCCHHHHHhcCCCCCEEEEeCCHH-H
Confidence 57999999999999999999999999999999999998887543 567889999999844449999999998 9
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
++++++++.+.+++|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+++|+||+++++++++++|+.+
T Consensus 94 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~~im~GG~~~a~~~~~~ll~~l 173 (358)
T 4e21_A 94 VDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGYCLMIGGEKQAVERLDPVFRTL 173 (358)
T ss_dssp HHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCCEEEEESCHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCCeeeecCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCC-------------CCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc
Q 011501 163 AAQVPDS-------------GPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGE 229 (484)
Q Consensus 163 ~~~~~~~-------------~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~ 229 (484)
+.+..++ +++++|+|+.|+|+++|+++|.+.++.+++++|++.++++.| +...
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~-~~~~------------- 239 (358)
T 4e21_A 174 APGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHAN-AGKE------------- 239 (358)
T ss_dssp SCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC---------------
T ss_pred ccccccCcccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccc-------------
Confidence 9532000 136899999999999999999999999999999999999876 2211
Q ss_pred chhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccC
Q 011501 230 LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 230 ~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
.. . -+ |. .. |+
T Consensus 240 ------------~~--~------------~~-------------~~-~~---~~-------------------------- 250 (358)
T 4e21_A 240 ------------GQ--G------------AD-------------AE-TA---PL-------------------------- 250 (358)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------cc--c------------cc-------------cc-cc---cc--------------------------
Confidence 00 0 00 00 00 10
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHcc
Q 011501 310 SGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDR 389 (484)
Q Consensus 310 ~~~~~~~~~~~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~ 389 (484)
+.+++|+|++|+.+|+++||+||+|+|+||+.+.++|.+
T Consensus 251 -----------------------------------------~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~ 289 (358)
T 4e21_A 251 -----------------------------------------RNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLD 289 (358)
T ss_dssp ------------------------------------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHH
T ss_pred -----------------------------------------ccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhh
Confidence 015779999999999999999999999999999999998
Q ss_pred CCCCCCcccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH-HHHhhcCCCcc-hhHHHHHhhccCCccce
Q 011501 390 NPDLANVLVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA-YFDTYRRERLP-ANLVQAQRDYFGAHTYE 463 (484)
Q Consensus 390 ~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~-~~~~~~~~~~~-~~~i~a~rd~fG~h~~~ 463 (484)
+|.++++. ..+. ++++ +||++..|.+.|+|+|++++||+ ||.+ +.++++ .|++||||||||+|+++
T Consensus 290 ~p~~~~~~--~~~~---d~g~--~r~~~~~A~~~gvp~p~~~~al~~~~~s-~~~~~~~~~l~~a~r~~fG~h~~~ 357 (358)
T 4e21_A 290 SPDLQEFQ--GRVS---DSGE--GRWTVAAAIDEGVPAHVLSSALYERFSS-RGEDDFANRLLSAMRYEFGGHREK 357 (358)
T ss_dssp CTTCTTC----CCC---CCSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHH-TTTTHHHHHHHHHHC---------
T ss_pred CCChHHHH--HHHH---hcCc--HHHHHHHHHHcCCChHHHHHHHHHHHHH-CCCcccHHHHHHHHHHhcCCCCCC
Confidence 87665422 2222 1334 49999999999999999999997 5666 778888 57999999999999975
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=378.54 Aligned_cols=265 Identities=21% Similarity=0.285 Sum_probs=240.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+||||||+|.||.+||+||+++||+|++|||++++++.+.+.+ .+.+.|+.|+++. +|+||+|||++.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~G-------a~~a~s~~e~~~~---~dvv~~~l~~~~~ 72 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 72 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTT---CSEEEECCSCHHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCceeecCCchHH
Confidence 56899999999999999999999999999999999999998764 5789999999998 9999999999999
Q ss_pred HHHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
+++|+. ++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+|+||+||+.+|+.|+ ++|+||+++++++++|+
T Consensus 73 v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~ 152 (300)
T 3obb_A 73 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 152 (300)
T ss_dssp HHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 999985 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++|+|+.|+|+.+|+++|.+.++++++++|++.++++.| +|++.+.+++ +.+...||.++..
T Consensus 153 l~~~g~~-------i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~G-ld~~~~~~vl---~~~~~~s~~~~~~ 221 (300)
T 3obb_A 153 FEAMGRN-------IFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVY 221 (300)
T ss_dssp HHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHC
T ss_pred HHHhCCC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCHHHHHHHH---HhCcccchHHHhh
Confidence 9999976 599999999999999999999999999999999999999 9999999987 5677788998877
Q ss_pred ccccc------cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 239 ADIFG------IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 239 ~~~l~------~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+... ..++|.++|.++.+.||++ ++.+.|++.|+|+|+...+ .++|.++
T Consensus 222 ~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~a-~~~~~~a 277 (300)
T 3obb_A 222 NPWPGVMENAPASRDYSGGFMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 277 (300)
T ss_dssp CCSTTTSTTSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred ccccchhhhccccccCCccchHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 65321 1246889999999999986 8999999999999987754 5655544
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=365.02 Aligned_cols=263 Identities=17% Similarity=0.268 Sum_probs=232.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.||||||+|.||.+||++|+++||+|++|||++++++++.+.+ .+.+.++.|+++. +|+||+|+|++.++
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G-------~~~~~s~~e~~~~---~dvvi~~l~~~~~~ 75 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLG-------ATVVENAIDAITP---GGIVFSVLADDAAV 75 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTT-------CEECSSGGGGCCT---TCEEEECCSSHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-------CeEeCCHHHHHhc---CCceeeeccchhhH
Confidence 4899999999999999999999999999999999988876543 5788999999987 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLK 161 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~ 161 (484)
++++ ..+.+.+.++++|||+||+.|.+++++.+.+.++|++|+|+||+|++.+++.|+ ++|+||+++++++++|+|+.
T Consensus 76 ~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~ 155 (297)
T 4gbj_A 76 EELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVEN 155 (297)
T ss_dssp HHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHH
Confidence 8776 568888999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 162 VAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 162 i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
++.+ ++|+|+ +|+|+.+|+++|.+.++.+++++|++.++++.| +|++++.+++ +.+.+.||.++.+.+
T Consensus 156 ~g~~-------i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~G-ld~~~~~~~l---~~~~~~s~~~~~~~~ 224 (297)
T 4gbj_A 156 FVKG-------VFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKNG-ISRQSIYEML---TSTLFAAPIFQNYGK 224 (297)
T ss_dssp TCSE-------EEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTTTTCSHHHHHHHH
T ss_pred hhCC-------eEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhcccCchhhccCc
Confidence 9976 589984 799999999999999999999999999999999 9999998887 578888999999888
Q ss_pred ccccccCCCC-chhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 241 IFGIKDDKGD-GYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 241 ~l~~~~~~~~-~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+..+ +|.| +|.++.+.||++ ++.+.|++.|+|+|+... +.++|..+
T Consensus 225 ~~~~~-~~~p~~f~~~l~~KDl~------l~~~~A~~~g~~~p~~~~-~~~~~~~a 272 (297)
T 4gbj_A 225 LVASN-TYEPVAFRFPLGLKDIN------LTLQTASDVNAPMPFADI-IRNRFISG 272 (297)
T ss_dssp HHHHT-CCCSCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHH-HHHHHHHH
T ss_pred cccCC-CCCCccchhHHHHHHHH------HHHHHHHHhCCCChHHHH-HHHHHHHH
Confidence 77654 4665 799999999986 899999999999998765 46666554
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-38 Score=314.11 Aligned_cols=264 Identities=19% Similarity=0.289 Sum_probs=238.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
||+|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ +..+.+++++++. +|+||+|||++.+
T Consensus 21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~ 90 (310)
T 3doj_A 21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHG-------ASVCESPAEVIKK---CKYTIAMLSDPCA 90 (310)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeEcCCHHHHHHh---CCEEEEEcCCHHH
Confidence 57999999999999999999999999999999999998887543 5678899999988 9999999999888
Q ss_pred HHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
+++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++
T Consensus 91 ~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~l 170 (310)
T 3doj_A 91 ALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPA 170 (310)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHH
Confidence 99998 788899999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+...|++++..
T Consensus 171 l~~~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~ 239 (310)
T 3doj_A 171 FDVLGKR-------SFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSG-LSSDTLLDILD---LGAMTNPMFKGK 239 (310)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhCCC-------EEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHH
Confidence 9999976 589999999999999999999999999999999999999 99999999984 567788888877
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.+.. ++|.++|.++...||++ .+++.|+++|+|+|++..+ .+.+..+
T Consensus 240 ~~~~~~-~~~~~~f~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 288 (310)
T 3doj_A 240 GPSMNK-SSYPPAFPLKHQQKDMR------LALALGDENAVSMPVAAAA-NEAFKKA 288 (310)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred hhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 666554 35788999999999985 8999999999999987754 5555443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=316.20 Aligned_cols=263 Identities=19% Similarity=0.277 Sum_probs=237.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.+
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 100 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALG-------ATIHEQARAAARD---ADIVVSMLENGAV 100 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTT-------CEEESSHHHHHTT---CSEEEECCSSHHH
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCC-------CEeeCCHHHHHhc---CCEEEEECCCHHH
Confidence 46999999999999999999999999999999999988887543 5778899999887 9999999999888
Q ss_pred HHHHHH--HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 83 VDQTIK--TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++.++. ++.+.+.++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 101 ~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll 180 (320)
T 4dll_A 101 VQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLL 180 (320)
T ss_dssp HHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHH
Confidence 999887 88888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.+ .+ ++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++.+++ +.+.+.||+++...
T Consensus 181 ~~~-~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~~~~ 248 (320)
T 4dll_A 181 KVF-GR-------ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGG-ADMAKVKEAI---TGGFADSRVLQLHG 248 (320)
T ss_dssp HHH-EE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHH---TTSTTCBHHHHTHH
T ss_pred Hhc-CC-------EEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcccccCHHHHHhh
Confidence 999 76 489999999999999999999999999999999999998 9999999987 56677899998877
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+.+..+ +|.++|.++.+.||+. ++++.|+++|+|+|++..+ .+.+..+
T Consensus 249 ~~~l~~-~~~~gf~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 296 (320)
T 4dll_A 249 QRMVER-DFAPRARLSIQLKDMR------NALATAQEIGFDAPITGLF-EQLYAEG 296 (320)
T ss_dssp HHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred hhhccC-CCCCcccHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 666543 5788999999999986 8999999999999987754 5555443
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=311.40 Aligned_cols=260 Identities=18% Similarity=0.203 Sum_probs=231.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||.+||.+|+++||+|++|||++++++.+.+.+ ++.+++++++++ +|+||+|||++.+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~----aDvvi~~vp~~~~ 83 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAG-------ATLADSVADVAA----ADLIHITVLDDAQ 83 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTT-------CEECSSHHHHTT----SSEEEECCSSHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CEEcCCHHHHHh----CCEEEEECCChHH
Confidence 46899999999999999999999999999999999988887643 577889998875 8999999999888
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLK 161 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~ 161 (484)
++++++++.+.++++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|+.
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 163 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKH 163 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988999999999999999999999 99999999999999999999
Q ss_pred HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH------HHHHHhhccCcchhhhh
Q 011501 162 VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL------QQVFSEWNKGELLSFLI 235 (484)
Q Consensus 162 i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i------~~~~~~~~~g~~~s~l~ 235 (484)
++.+ ++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| +|++++ .+++ +.+.+.||+.
T Consensus 164 ~g~~-------~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~~~~~i---~~~~~~s~~~ 232 (296)
T 3qha_A 164 WAAV-------VIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG-LDLQALGRVVRHTDAL---TGGPGAIMVR 232 (296)
T ss_dssp HEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHH---HCCGGGGCCC
T ss_pred HcCC-------eEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHhhhcchHHHH---hcCcccCHHh
Confidence 9976 489999999999999999999999999999999999999 999999 5555 4577778776
Q ss_pred hhhccccccccCCCCchhH-----HHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 236 EITADIFGIKDDKGDGYLV-----DKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~l-----~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+ ...++. + |.++|.+ +.+.||+. ++.+.|+++|+|+|++..+ .+.|..+
T Consensus 233 ~-~~~~~~--~-~~~~f~~~~~~~~~~~KD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~~ 286 (296)
T 3qha_A 233 D-NMKDLE--P-DNFLYQPFLHTRGLGEKDLS------LALALGEAVSVDLPLARLA-YEGLAAG 286 (296)
T ss_dssp S-SCSCCC--T-TSTTHHHHHHHHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred h-chhhhh--c-CCCCCchhhhhhHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 6 333443 2 6788988 99999985 8889999999999988754 5666544
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=307.43 Aligned_cols=262 Identities=17% Similarity=0.269 Sum_probs=237.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||||||+|.||.++|.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---aDvvi~~vp~~~~~ 71 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALG-------AERAATPCEVVES---CPVTFAMLADPAAA 71 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEcCCHHHH
Confidence 6899999999999999999999999999999999998887643 5778899999988 99999999988789
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++++ +++.+.+++|++|||+||..|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pef_A 72 EEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGF 151 (287)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9999 888899999999999999999999999999999999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++++|+.|.|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+.+.|++++...
T Consensus 152 ~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G-~d~~~~~~~~~---~~~~~s~~~~~~~ 220 (287)
T 3pef_A 152 EKMGKK-------IIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAG-LATDAILDVIG---AGAMANPMFALKG 220 (287)
T ss_dssp HHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHhCCC-------eEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hcccccHHHHHHh
Confidence 999976 489999999999999999999999999999999999999 99999999984 5667889888877
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s 294 (484)
+.+..+ +|.++|.++...||+. ++++.|+++|+|+|++..+ .+.+..
T Consensus 221 ~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 267 (287)
T 3pef_A 221 GLIRDR-NFAPAFPLKHMQKDLR------LAVALGDRVGQPLVASAAA-NELFKG 267 (287)
T ss_dssp HHHHTT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred hhhhcC-CCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 666543 5788999999999985 8999999999999987754 555443
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-38 Score=308.41 Aligned_cols=262 Identities=18% Similarity=0.250 Sum_probs=236.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+++||+|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~~~~~---advvi~~v~~~~~~ 71 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALG-------ARQASSPAEVCAA---CDITIAMLADPAAA 71 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHT-------CEECSCHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCC-------CeecCCHHHHHHc---CCEEEEEcCCHHHH
Confidence 5899999999999999999999999999999999998887653 5678899999988 99999999998789
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++++ +++.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||+++++++++++|
T Consensus 72 ~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 151 (287)
T 3pdu_A 72 REVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAF 151 (287)
T ss_dssp HHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHH
T ss_pred HHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence 9998 888899999999999999999999999999989999999999999999999999 899999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++++|+.|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++. .+...|++++...
T Consensus 152 ~~~g~~-------~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~s~~~~~~~ 220 (287)
T 3pdu_A 152 AALGKK-------CLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCG-LDGGQLLEVLD---AGAMANPMFKGKG 220 (287)
T ss_dssp HHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHHH
T ss_pred HHhCCC-------EEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hccccChHHHhhc
Confidence 999976 589999999999999999999999999999999999999 99999999984 5667888888877
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s 294 (484)
+.+..+ +|.++|.++...||++ ++++.|+++|+|+|++..+ .+.+..
T Consensus 221 ~~~~~~-~~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~~-~~~~~~ 267 (287)
T 3pdu_A 221 QMLLSG-EFPTSFPLKHMQKDLR------LAVELGDRLGQPLHGAATA-NESFKR 267 (287)
T ss_dssp HHHHHT-CCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHH
T ss_pred cccccC-CCCCCCcHHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHH
Confidence 666543 5788899999999975 8999999999999987754 454443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-37 Score=306.64 Aligned_cols=264 Identities=21% Similarity=0.268 Sum_probs=235.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+|+|||||+|.||.+||.+|+++|++|++|||++++++.+.+.+ ... +.+++++++. +|+||+|||++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~~e~~~~---aDvvi~~vp~~~ 76 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEG-------ACGAAASAREFAGV---VDALVILVVNAA 76 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CSEEESSSTTTTTT---CSEEEECCSSHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-------CccccCCHHHHHhc---CCEEEEECCCHH
Confidence 46899999999999999999999999999999999998887654 334 7788888877 999999999987
Q ss_pred hHHHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHH
Q 011501 82 PVDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIED 157 (484)
Q Consensus 82 ~v~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ 157 (484)
.++.++ +++.+.++++++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|+ .+++||++++++++++
T Consensus 77 ~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ 156 (303)
T 3g0o_A 77 QVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKP 156 (303)
T ss_dssp HHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHH
T ss_pred HHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHH
Confidence 888888 788899999999999999999999999998988999999999999999999999 8999999999999999
Q ss_pred HHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhh
Q 011501 158 ILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIE 236 (484)
Q Consensus 158 ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 236 (484)
+|+.++.+ ++++|+ .|+|+.+|+++|.+.+..+++++|++.++++.| ++++++.+++ +.+...|++++
T Consensus 157 ll~~~g~~-------~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~d~~~~~~~~---~~~~~~s~~~~ 225 (303)
T 3g0o_A 157 VLDAVASN-------VYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAG-IPLDVMYDVV---THAAGNSWMFE 225 (303)
T ss_dssp HHHHHEEE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHH
T ss_pred HHHHHCCC-------EEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhcccCCHHHH
Confidence 99999976 489998 899999999999999999999999999999999 9999999987 45677888888
Q ss_pred hhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 237 ITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 237 ~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
...+.+.. ++|.++|.++...||+. ++++.|+++|+|+|++..+ .+.+..+
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~kD~~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 276 (303)
T 3g0o_A 226 NRMQHVVD-GDYTPRSAVDIFVKDLG------LVADTAKALRFPLPLASTA-LNMFTSA 276 (303)
T ss_dssp HHHHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred hhhHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 77665544 35788899999999985 8999999999999987754 5555443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=291.57 Aligned_cols=261 Identities=13% Similarity=0.136 Sum_probs=224.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|||||+|.||.+||.+|+++|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|||++.+
T Consensus 9 ~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~~~~ 78 (306)
T 3l6d_A 9 EFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAG-------AHLCESVKAALSA---SPATIFVLLDNHA 78 (306)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-------CEECSSHHHHHHH---SSEEEECCSSHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhc---CCEEEEEeCCHHH
Confidence 46899999999999999999999999999999999998887653 4678899999988 9999999999877
Q ss_pred HHHHHH--HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 83 VDQTIK--TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~--~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+++++. .+.+ +.+|++|||+||+.|..++++.+.+.++|++|+++||+|+++.+..+. .+++||+++++++++++|
T Consensus 79 ~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll 157 (306)
T 3l6d_A 79 THEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALL 157 (306)
T ss_dssp HHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHH
T ss_pred HHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHH
Confidence 898886 6644 568999999999999999999999999999999999999987776666 899999999999999999
Q ss_pred HHHhccCCCCCCceEEe--CC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhh
Q 011501 160 LKVAAQVPDSGPCVTYV--GK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIE 236 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~--G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~ 236 (484)
+.++.+ ++++ |+ .|+|+.+| .+.++.+++++|++.++++.| +|++++.+++..+.. .+.|++++
T Consensus 158 ~~lg~~-------~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~G-ld~~~~~~~~~~~~~-~~~s~~~~ 224 (306)
T 3l6d_A 158 EGLAGH-------TVFLPWDEALAFATVLH----AHAFAAMVTFFEAVGAGDRFG-LPVSKTARLLLETSR-FFVADALE 224 (306)
T ss_dssp HTTCSE-------EEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHhcCC-------EEEecCCCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhhh-hcccHHHH
Confidence 999765 5999 87 79999999 566788999999999999999 999999999854310 15788888
Q ss_pred hhccccccccCCCCc-hhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 237 ITADIFGIKDDKGDG-YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 237 ~~~~~l~~~~~~~~~-~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
...+.+..+ +|.++ |.++...||+. ++++.|++.|+|+|++..+ .+.+..+
T Consensus 225 ~~~~~~~~~-~~~~~~~~~~~~~KDl~------~~~~~a~~~g~~~p~~~~~-~~~~~~a 276 (306)
T 3l6d_A 225 EAVRRLETQ-DFKGDQARLDVHADAFA------HIAQSLHAQGVWTPVFDAV-CQVVQRA 276 (306)
T ss_dssp HHHHHHHHT-CCCTTSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred HHHHHHhcC-CCCCCcccHHHHHHHHH------HHHHHHHHcCCCchHHHHH-HHHHHHH
Confidence 777666543 57764 78999999986 8999999999999987754 5655544
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=278.80 Aligned_cols=255 Identities=13% Similarity=0.096 Sum_probs=209.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+|+|||||+|.||.+||.+|+++|+ +|++|||+ +++.+.+.+.+ +..+.+++++++. +|+||+|||+
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g-------~~~~~~~~e~~~~---aDvVi~~vp~ 93 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELG-------VSCKASVAEVAGE---CDVIFSLVTA 93 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTT-------CEECSCHHHHHHH---CSEEEECSCT
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCC-------CEEeCCHHHHHhc---CCEEEEecCc
Confidence 5799999999999999999999999 99999997 46666665432 5678899999888 9999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+. ..++++++.+.+.++++|||+||+.|.+++++.+.+.++ |++|+++|++|++..+ .|. .+++||+.+ +.++
T Consensus 94 ~~-~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~ 169 (312)
T 3qsg_A 94 QA-ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQ 169 (312)
T ss_dssp TT-HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHH
T ss_pred hh-HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHH
Confidence 85 455779999999999999999999999999999998888 9999999999976654 566 889999877 8999
Q ss_pred HHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhh
Q 011501 157 DILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLI 235 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~ 235 (484)
++|+.++.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| +++ ++.+.+. .+. .++.+
T Consensus 170 ~ll~~~g~~-------~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~G-ld~-~~~~~l~---~~~-~~~~~ 236 (312)
T 3qsg_A 170 AAFTLYGCR-------IEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG-LAD-RVLASLD---ASF-PEHHL 236 (312)
T ss_dssp HHHHTTTCE-------EEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CHH-HHHHHHH---HHS-GGGTH
T ss_pred HHHHHhCCC-------eEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH-HHHHHHH---hcC-CchhH
Confidence 999999976 589998 899999999999999999999999999999999 999 5666663 332 24444
Q ss_pred hhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 236 EITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 236 ~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
+...+.+.. ++|.++|.+ .||++ .+++.|++.|+|+|++..+ .+.+...
T Consensus 237 ~~~~~~~~~-~~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~~ 285 (312)
T 3qsg_A 237 RDLALYLVE-RNLEHADRR---AHELG------EVAATLCSVGVEPLVAEAG-YRRLTRV 285 (312)
T ss_dssp HHHHHHHHH-HHHHHHHHH---HHHHH------HHHHHHHHTTCCCHHHHHH-HHHHHHH
T ss_pred HHhhhHhhc-CCCCcccch---HHHHH------HHHHHHHHcCCCcHHHHHH-HHHHHHH
Confidence 444444433 246666765 46664 7899999999999987754 4554443
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=276.50 Aligned_cols=252 Identities=14% Similarity=0.134 Sum_probs=201.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCCh-------hHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTT-------SKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVI 73 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~-------~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advI 73 (484)
+|+|||||+|.||.+||.+|+++| ++|++|||++ +..+.+.+. ++ +. +++++++. +|+|
T Consensus 24 ~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~-------g~--~~~s~~e~~~~---aDvV 91 (317)
T 4ezb_A 24 MTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAEL-------GV--EPLDDVAGIAC---ADVV 91 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHT-------TC--EEESSGGGGGG---CSEE
T ss_pred CCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHC-------CC--CCCCHHHHHhc---CCEE
Confidence 468999999999999999999999 9999999998 333433322 23 56 78888887 9999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHH
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAY 152 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~ 152 (484)
|+|||++.. .++++++.+.++++++|||+||+.|.+++++.+.+.++|+.|+++|++|++ .+..|. ++++||+.+
T Consensus 92 i~avp~~~~-~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~-~a~~g~l~i~vgg~~~-- 167 (317)
T 4ezb_A 92 LSLVVGAAT-KAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV-PPYAEKVPILVAGRRA-- 167 (317)
T ss_dssp EECCCGGGH-HHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS-TTTGGGSEEEEESTTH--
T ss_pred EEecCCHHH-HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc-hhhcCCEEEEEeCChH--
Confidence 999999854 456689999999999999999999999999999999899999999999964 555666 889999877
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc-c
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGE-L 230 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~-~ 230 (484)
+.++++|+.++.+ ++++|+ .|+|+.+|+++|.+.++.+++++|++.++++.| ++++ +.+.+. .+. .
T Consensus 168 ~~~~~ll~~~g~~-------v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~G-id~~-~~~~l~---~~~~~ 235 (317)
T 4ezb_A 168 VEVAERLNALGMN-------LEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG-VTER-ILDSVQ---ETFPG 235 (317)
T ss_dssp HHHHHHHHTTTCE-------EEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---HHSTT
T ss_pred HHHHHHHHHhCCC-------eEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHH-HHHHHH---hcCcc
Confidence 8999999999965 599998 899999999999999999999999999999999 9995 444442 222 2
Q ss_pred hhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 231 LSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 231 ~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+| ....+.+.. ++|.++|.+ .||++ .+++.|+++|+|+|++..+ .+.+..+
T Consensus 236 ~~~--~~~~~~~~~-~~~~~g~~~---~KDl~------~~~~~a~~~g~~~pl~~~~-~~~~~~a 287 (317)
T 4ezb_A 236 LDW--RDVADYYLS-RTFEHGARR---VTEMT------EAAETIESFGLNAPMSRAA-CETIAAA 287 (317)
T ss_dssp SCH--HHHHHHHHH-HHHHHHHHH---HHHHH------HHHHHHHTTTCCCHHHHHH-HHHHHHH
T ss_pred ccH--HHhhhhhhc-CCCCCCcch---HHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 233 222333332 235556653 66764 7899999999999987754 5554443
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=265.94 Aligned_cols=261 Identities=19% Similarity=0.283 Sum_probs=223.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||..++.+|.++|++|.+|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|++.++
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~v~~~~~~ 75 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 75 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCCHHHH
Confidence 6999999999999999999999999999999999988876642 5667889898887 99999999988788
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+.++ +++.+.+.++++||++++..+.+.+++.+.+.+.|++|+++|+++++..+..+. .+++||+++.++.++++|
T Consensus 76 ~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 155 (299)
T 1vpd_A 76 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 155 (299)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHH
Confidence 8888 678888999999999999998888888888888899999999999988888888 888899999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++++++.|.+.++|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...++.+....
T Consensus 156 ~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~ 224 (299)
T 1vpd_A 156 KAMAGS-------VVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKA 224 (299)
T ss_dssp HTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHH
T ss_pred HHHcCC-------eEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HccCCCCHHHHHhh
Confidence 999975 488899999999999999999999999999999999999 9999988876 44555566665444
Q ss_pred cccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHH
Q 011501 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFL 293 (484)
Q Consensus 240 ~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~ 293 (484)
+.+.. +++.+++.++.+.++++ ++++.|+++|+|+|+... +++.+.
T Consensus 225 ~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-~~~~~~ 270 (299)
T 1vpd_A 225 PMVMD-RNFKPGFRIDLHIKDLA------NALDTSHGVGAQLPLTAA-VMEMMQ 270 (299)
T ss_dssp HHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHH-HHHHHH
T ss_pred hHhhc-CCCCCCCChHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHH
Confidence 44333 34677788998888765 889999999999998765 344433
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-31 Score=261.98 Aligned_cols=263 Identities=23% Similarity=0.364 Sum_probs=224.4
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+ +|+|+|||+|.||..++.+|++.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|.
T Consensus 1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~ 70 (301)
T 3cky_A 1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQG-------AQACENNQKVAAA---SDIIFTSLPN 70 (301)
T ss_dssp ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTT-------CEECSSHHHHHHH---CSEEEECCSS
T ss_pred CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCC-------CeecCCHHHHHhC---CCEEEEECCC
Confidence 53 47999999999999999999999999999999999888776532 5677889998887 9999999998
Q ss_pred CchHHHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHH
Q 011501 80 GSPVDQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHI 155 (484)
Q Consensus 80 ~~~v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v 155 (484)
+.+++.++. ++.+.+.++++||++++..|.+..++.+.+.++|++|+++|+++++..+..|. .+++||+++.++.+
T Consensus 71 ~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v 150 (301)
T 3cky_A 71 AGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKI 150 (301)
T ss_dssp HHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHH
Confidence 878888885 78888999999999999998888888888888899999999999998888888 78889999999999
Q ss_pred HHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhh
Q 011501 156 EDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLI 235 (484)
Q Consensus 156 ~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~ 235 (484)
+++|+.++.+ ++++++.|+|..+|+++|.+.+..++++.|++.++++.| ++++++.+++. .+...++.+
T Consensus 151 ~~ll~~~g~~-------~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~~---~~~~~~~~~ 219 (301)
T 3cky_A 151 QPVLSVIGKD-------IYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCG-LKPETMQEIIG---KSSGRSYAM 219 (301)
T ss_dssp HHHHHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHH
T ss_pred HHHHHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHH
Confidence 9999999975 478899999999999999999999999999999999998 99999988874 344456666
Q ss_pred hhhcc-ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHH
Q 011501 236 EITAD-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 236 ~~~~~-~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~ 292 (484)
....+ .+.. +++.+++.++.+.||++ ++++.++++|+|+|+... +++.+
T Consensus 220 ~~~~~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-~~~~~ 269 (301)
T 3cky_A 220 EAKMEKFIMS-GDFAGGFAMDLQHKDLG------LALEAGKEGNVPLPMTAM-ATQIF 269 (301)
T ss_dssp HHHCCCCCCT-CCCSSSSBHHHHHHHHH------HHHHHHHHHTCCCHHHHH-HHHHH
T ss_pred HHhhhhhhhc-CCCCCCccHHHHHHHHH------HHHHHHHHhCCCChHHHH-HHHHH
Confidence 55555 3332 34677889999998875 889999999999998764 44444
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=258.21 Aligned_cols=263 Identities=19% Similarity=0.270 Sum_probs=220.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||..+|.+|+++|++|++|||++++.+.+.+. ++..+.+++++++. +|+||+|+|.+.++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~---~Dvvi~~vp~~~~~ 70 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA-------GEQVVSSPADVAEK---ADRIITMLPTSINA 70 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTT-------TCEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-------CCeecCCHHHHHhc---CCEEEEeCCCHHHH
Confidence 489999999999999999999999999999999998877653 25677899998887 99999999988788
Q ss_pred HHHHHH---HhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTIKT---LSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl~~---l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
+.++.+ +.+.+.++++||++++..+.+.+++.+.+.++|..|+++|+++++..+..|. .+++|++++.++.++++|
T Consensus 71 ~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~ 150 (296)
T 2gf2_A 71 IEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELL 150 (296)
T ss_dssp HHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHH
T ss_pred HHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHH
Confidence 888875 4557788999999999998888888777777899999999999988888888 888999999999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhc
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~ 239 (484)
+.++.+ ++++++.|+|+..|+++|.+.+..+.+++|++.++++.| ++++++.+++. .+.+.++++....
T Consensus 151 ~~~g~~-------~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G-~~~~~~~~~~~---~~~~~~~~~~~~~ 219 (296)
T 2gf2_A 151 GCMGSN-------VVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLG-LDPKLLAKILN---MSSGRCWSSDTYN 219 (296)
T ss_dssp TTTEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TSTTCBHHHHHSC
T ss_pred HHHcCC-------eEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---hCcccCHHHHhcC
Confidence 999975 488888999999999999999999999999999999999 99999988874 3445566665432
Q ss_pred c---ccc---cccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHh
Q 011501 240 D---IFG---IKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 240 ~---~l~---~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s 294 (484)
+ .+. .+.++.++|.++.+.||++ ++++.|+++|+|+|+... +++.+..
T Consensus 220 ~~~~~l~~s~~~~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-~~~~~~~ 273 (296)
T 2gf2_A 220 PVPGVMDGVPSANNYQGGFGTTLMAKDLG------LAQDSATSTKSPILLGSL-AHQIYRM 273 (296)
T ss_dssp SSTTTCSSSGGGGTTCSSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHH-HHHHHHH
T ss_pred CcccccccchhccCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHHH
Confidence 1 211 1234677889999988875 899999999999998765 4554443
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=257.84 Aligned_cols=260 Identities=22% Similarity=0.330 Sum_probs=221.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
||+|+|||+|.||..+|.+|+++|++|++|| ++++.+.+.+.+ +..+.+++++++. +|+||+|+|.+.+
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g-------~~~~~~~~~~~~~---~D~vi~~vp~~~~ 71 (295)
T 1yb4_A 3 AMKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLG-------AVNVETARQVTEF---ADIIFIMVPDTPQ 71 (295)
T ss_dssp -CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTT-------CBCCSSHHHHHHT---CSEEEECCSSHHH
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcC-------CcccCCHHHHHhc---CCEEEEECCCHHH
Confidence 4699999999999999999999999999999 988887776532 4567789888877 9999999999877
Q ss_pred HHHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
++.++. ++.+.+.++++||++++..+.+.+++.+.+.++|++|+++|+++++..+..|. .+++||+++.++.++++
T Consensus 72 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~l 151 (295)
T 1yb4_A 72 VEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPL 151 (295)
T ss_dssp HHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHH
Confidence 888887 78888889999999999998888888888887899999999999988888888 78889999999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++++++.|.+..+|+++|.+.+..++++.|++.++++.| ++++++.+++ ..+...++.+...
T Consensus 152 l~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~ 220 (295)
T 1yb4_A 152 FDILGKN-------ITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAG-ADPVRVRQAL---MGGFASSRILEVH 220 (295)
T ss_dssp HHHHEEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TSSSSCBHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HcCCCCCHHHHHh
Confidence 9999976 488899999999999999999999999999999999999 9999988876 4455556665544
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHH
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~ 292 (484)
.+.+.. +++++++..+.+.+|++ +.++.++++|+|+|++.. +.+.+
T Consensus 221 ~~~~~~-~~~~~g~~~~~~~kd~~------~~~~~a~~~g~~~p~~~~-~~~~~ 266 (295)
T 1yb4_A 221 GERMIN-RTFEPGFKIALHQKDLN------LALQSAKALALNLPNTAT-CQELF 266 (295)
T ss_dssp HHHHHT-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHH-HHHHH
T ss_pred hHHHhc-CCCCCCCchHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHH
Confidence 443433 34677888888888874 889999999999998764 34443
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=255.76 Aligned_cols=262 Identities=16% Similarity=0.269 Sum_probs=220.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|+|||+|.||..+|.+|++.|++|++|||++++.+.+.+.+ +..+.+++++++. +|+||+|+|++.+
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g-------~~~~~~~~~~~~~---~DvVi~av~~~~~ 99 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEG-------ARLGRTPAEVVST---CDITFACVSDPKA 99 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTT-------CEECSCHHHHHHH---CSEEEECCSSHHH
T ss_pred CCeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcC-------CEEcCCHHHHHhc---CCEEEEeCCCHHH
Confidence 37899999999999999999999999999999999888776532 4567788888887 9999999997778
Q ss_pred HHHHHHHH---hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTIKTL---SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
+++++.++ .+.+.++++||+++|..+....++.+.+..++..|+++|+++++..+..|+ .++++|+++.++.++++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~l 179 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSC 179 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHH
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHH
Confidence 88888754 477889999999999998888888888877899999999999998888898 77888899999999999
Q ss_pred HHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhh
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEIT 238 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~ 238 (484)
|+.++.+ ++++|+.+.+...|++.|.+....+.++.|++.++++.| ++++++.+++. .+...++.+...
T Consensus 180 l~~~g~~-------~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G-~~~~~~~~~~~---~~~~~s~~~~~~ 248 (316)
T 2uyy_A 180 FQAMGKT-------SFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTG-QSQQTLLDILN---QGQLASIFLDQK 248 (316)
T ss_dssp HHHHEEE-------EEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH---HSTTCCHHHHHH
T ss_pred HHHhcCC-------EEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH---cCCCCCHHHHHh
Confidence 9999975 478888999999999999999999999999999999998 99999988874 444455555443
Q ss_pred ccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHH
Q 011501 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFL 293 (484)
Q Consensus 239 ~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~ 293 (484)
.+.+.. +++++++.++.+.+|++ ++++.++++|+|+|+... +++.+.
T Consensus 249 ~~~~l~-~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-v~~~~~ 295 (316)
T 2uyy_A 249 CQNILQ-GNFKPDFYLKYIQKDLR------LAIALGDAVNHPTPMAAA-ANEVYK 295 (316)
T ss_dssp HHHHHH-TCCCCSSBHHHHHHHHH------HHHHHHHHTTCCCHHHHH-HHHHHH
T ss_pred hHHhhc-CCCCCCCcHHHHHHHHH------HHHHHHHHhCCCChHHHH-HHHHHH
Confidence 333332 34677888998888875 889999999999998764 444443
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-30 Score=255.83 Aligned_cols=257 Identities=25% Similarity=0.305 Sum_probs=218.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||..+|.+|++ |++|++|||++++.+.+.+.+ +..++ +++++.. +|+||+|+|++.++
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g-------~~~~~-~~~~~~~---~D~vi~~v~~~~~~ 69 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEF-------GSEAV-PLERVAE---ARVIFTCLPTTREV 69 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHH-------CCEEC-CGGGGGG---CSEEEECCSSHHHH
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCC-------CcccC-HHHHHhC---CCEEEEeCCChHHH
Confidence 589999999999999999999 999999999999988877654 23344 6676666 99999999998678
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i 162 (484)
+.+++++.+.+.++++||++|+..+...+++.+.+.++|++|+++|+++++..+..|+ .+++|++++.++.++++| .+
T Consensus 70 ~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~ 148 (289)
T 2cvz_A 70 YEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AY 148 (289)
T ss_dssp HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TT
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hh
Confidence 9999999888999999999999998888888888887889999999999998888888 788899999999999999 99
Q ss_pred hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc--
Q 011501 163 AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD-- 240 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~-- 240 (484)
+.+ ++++++.+.++.+|+++|.+.+..+++++|++.++++.| ++++++.+++ ..+...+++++...+
T Consensus 149 g~~-------~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G-~~~~~~~~~~---~~~~~~s~~~~~~~~~~ 217 (289)
T 2cvz_A 149 AKK-------VVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQR 217 (289)
T ss_dssp EEE-------EEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHH
T ss_pred cCC-------eEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cCHHHHHHHH---HccCCCCHHHHHhccch
Confidence 865 488898999999999999999999999999999999998 9999988887 345555666665544
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHH
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFL 293 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~ 293 (484)
++. +++++++.++.+.||++ ++++.++++|+|+|+..+ +.+.+.
T Consensus 218 ~l~--~~~~~g~~~~~~~kd~~------~~~~~a~~~gv~~p~~~~-v~~~~~ 261 (289)
T 2cvz_A 218 VLT--RAFPKTFALGLLVKDLG------IAMGVLDGEKAPSPLLRL-AREVYE 261 (289)
T ss_dssp TTT--SCCCCSSBHHHHHHHHH------HHHHHHTTTCCCCHHHHH-HHHHHH
T ss_pred hhc--CCCCCCcChHHHHHHHH------HHHHHHHHcCCCChHHHH-HHHHHH
Confidence 433 34677889999988875 889999999999998764 455443
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=254.55 Aligned_cols=254 Identities=17% Similarity=0.174 Sum_probs=198.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh---------------hcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------QEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 68 (484)
.+|+|||+|.||.+||.+|+++||+|++||+++++++.+.+... ..+ +++.+++++++++.
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g--~l~~ttd~~ea~~~-- 84 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAG--RLSFTTDLAEGVKD-- 84 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHTT--
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccC--CEEEECCHHHHHhc--
Confidence 48999999999999999999999999999999999988765210 011 46788899888887
Q ss_pred CCcEEEEecCCCc----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhh
Q 011501 69 KPRVIIMLVKAGS----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGAR 138 (484)
Q Consensus 69 ~advIi~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~ 138 (484)
+|+||+|||++. .++++++++.+.+++|++||++||+.|.+++++.+.+.+.+.. .+.++.++|+.++
T Consensus 85 -aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~ 162 (446)
T 4a7p_A 85 -ADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLR 162 (446)
T ss_dssp -CSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCC
T ss_pred -CCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCccccc
Confidence 999999999875 4899999999999999999999999999999998888776432 3344444444444
Q ss_pred cCC---------ccccCCC-HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 011501 139 YGP---------SLMPGGS-FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLK 208 (484)
Q Consensus 139 ~g~---------~i~~gg~-~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~ 208 (484)
+|. .+++|++ +++.+.++++|+.+..+ ...++++++.++|+++|+++|.+.+..+++++|+..+|+
T Consensus 163 eG~a~~d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~----~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~ 238 (446)
T 4a7p_A 163 EGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLSLN----QSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCE 238 (446)
T ss_dssp TTSHHHHHHSCSCEEEECSCHHHHHHHHHHHCSCC---------CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCCCEEEEeCCcHHHHHHHHHHHHHHhcC----CCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 6788885 89999999999887642 001478889999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 209 SVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 209 ~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
+.| +|++++.+++. .++ ++....+.. +++|...-+.||+. +.+..|+++|+++|++.++
T Consensus 239 ~~G-iD~~~v~~~~~---~~~------rig~~~l~p----g~G~gg~c~~KD~~------~l~~~A~~~g~~~~l~~~~ 297 (446)
T 4a7p_A 239 QVG-ADVQEVSRGIG---MDN------RIGGKFLHA----GPGYGGSCFPKDTL------ALMKTAADNETPLRIVEAT 297 (446)
T ss_dssp HTT-CCHHHHHHHHH---TST------TC---CCCC----CSCCCTTTHHHHHH------HHHHHHHHTTCCCHHHHHH
T ss_pred HcC-CCHHHHHHHHh---cCC------CCCCccCCC----CCCcchhhHHHHHH------HHHHHHHhcCCCCHHHHHH
Confidence 999 99999999873 221 111112221 23344445556653 6788999999999998865
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-27 Score=250.24 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=199.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh---------------hcCCCCeeecCCHhHHHh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------QEGNLPLYGFHDPESFVH 65 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~e~~~ 65 (484)
|+ |||+|||+|.||.++|.+|+++|++|++||+++++++.+.+... ..+ ++..+++++++++
T Consensus 1 M~-mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~--~l~~t~d~~ea~~ 77 (450)
T 3gg2_A 1 MS-LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAG--RLRFGTEIEQAVP 77 (450)
T ss_dssp -C-CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTT--SEEEESCHHHHGG
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccC--cEEEECCHHHHHh
Confidence 44 69999999999999999999999999999999999988775210 011 3677889998888
Q ss_pred hcCCCcEEEEecCCCc---------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe---EEeccCCCC
Q 011501 66 SIQKPRVIIMLVKAGS---------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL---YLGMGVSGG 133 (484)
Q Consensus 66 ~l~~advIi~~vp~~~---------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~---~i~~pv~gg 133 (484)
. +|+||+|||++. .++++++++.++++++++||++||+.|.+++++.+.+.+.+.. ..+.++.++
T Consensus 78 ~---aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~ 154 (450)
T 3gg2_A 78 E---ADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASN 154 (450)
T ss_dssp G---CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEEC
T ss_pred c---CCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEec
Confidence 7 999999999985 7899999999999999999999999999999988877664211 123333444
Q ss_pred HHhhhcCC---------ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHH
Q 011501 134 EEGARYGP---------SLMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203 (484)
Q Consensus 134 ~~~a~~g~---------~i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea 203 (484)
|+.++.|. .+++|| ++++.+.++++|+.+..+ ..++++++.+.++++|+++|.+.+..+++++|+
T Consensus 155 Pe~a~eG~~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~-----~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~ 229 (450)
T 3gg2_A 155 PEFLKEGNAIDDFMKPDRVVVGVDSDRARELITSLYKPMLLN-----NFRVLFMDIASAEMTKYAANAMLATRISFMNDV 229 (450)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCS-----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccchhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcC-----CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333 577787 589999999999988752 113678889999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcch
Q 011501 204 YDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 283 (484)
Q Consensus 204 ~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~ 283 (484)
..++++.| +|++++.+++. .++ ++....+.. +++|...-+.||+. +.+..|+++|+++|+
T Consensus 230 ~~l~~~~G-id~~~v~~~~~---~~~------rig~~~~~p----g~G~gg~c~~KD~~------~l~~~a~~~g~~~~l 289 (450)
T 3gg2_A 230 ANLCERVG-ADVSMVRLGIG---SDS------RIGSKFLYP----GCGYGGSCFPKDVK------ALIRTAEDNGYRMEV 289 (450)
T ss_dssp HHHHHHHT-CCHHHHHHHHH---TST------TTCSSSCCC----SSCCCSSHHHHHHH------HHHHHHHHTTCCCHH
T ss_pred HHHHHHhC-CCHHHHHHHHc---CCC------CCCcccCCC----CCCCCcccHHhhHH------HHHHHHHHcCCCcHH
Confidence 99999999 99999999873 221 111112221 12233445556653 678899999999999
Q ss_pred HHHHHHHHHHh
Q 011501 284 IESSLDARFLS 294 (484)
Q Consensus 284 ~~~av~~r~~s 294 (484)
+.++ .+-+.+
T Consensus 290 ~~~~-~~iN~~ 299 (450)
T 3gg2_A 290 LEAV-ERVNEK 299 (450)
T ss_dssp HHHH-HHHHHH
T ss_pred HHHH-HHHHHH
Confidence 8865 343333
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-27 Score=247.84 Aligned_cols=255 Identities=12% Similarity=0.050 Sum_probs=198.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChh----HHHHHHHHhh-----------------hcCCCCeeecC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTS----KVDETVERAK-----------------QEGNLPLYGFH 58 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~----~~~~~~~~~~-----------------~~~~~~~~~~~ 58 (484)
.+|||+|||+|.||.++|.+|+++ || +|++||++++ +++.+.+... ..+ ++..++
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g--~l~~tt 94 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAG--KFECTP 94 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTT--CEEEES
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccC--CeEEeC
Confidence 457999999999999999999999 99 9999999999 8887764110 011 356666
Q ss_pred CHhHHHhhcCCCcEEEEecCCCc-----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH--HcC---
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGS-----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA--ELG--- 122 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~--~~g--- 122 (484)
+ .+.++. +|+||+|||++. .+..+.+++.+++++|++||++||+.|.+++++.+.+. +.|
T Consensus 95 d-~ea~~~---aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~ 170 (478)
T 3g79_A 95 D-FSRISE---LDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKA 170 (478)
T ss_dssp C-GGGGGG---CSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCB
T ss_pred c-HHHHhc---CCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCc
Confidence 6 566666 999999999873 25677789999999999999999999999999886443 345
Q ss_pred ---CeEEeccCCCCHHhhhc----CCccccCCCHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHH
Q 011501 123 ---LLYLGMGVSGGEEGARY----GPSLMPGGSFEAYKHIEDILLKV-AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEY 194 (484)
Q Consensus 123 ---~~~i~~pv~gg~~~a~~----g~~i~~gg~~~~~~~v~~ll~~i-~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~ 194 (484)
+.++++|.++.+..+.. .+.++.|++++.+++++++|+.+ +.. ++++|+.++|+.+|+++|.+.+
T Consensus 171 ~~d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~~aE~~Kl~~N~~~a 243 (478)
T 3g79_A 171 GEDFALAHAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVG-------QVIPMSATAAEVTKTAENTFRD 243 (478)
T ss_dssp TTTBEEEECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSC-------CEEEEEHHHHHHHHHHHHHHHH
T ss_pred CCceeEEeCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCC-------eEEeCCHHHHHHHHHHHHHHHH
Confidence 47899998877655433 23788999999999999999999 654 4889999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHH
Q 011501 195 GDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQA 274 (484)
Q Consensus 195 ~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A 274 (484)
..+++++|+..+|++.| +|++++.+++. .. +.+++....+..+-.|+ ..-+-||.. +.+..|
T Consensus 244 ~~Ia~~nE~~~l~e~~G-iD~~~v~~~~~---~~----~~~ri~~~~~~PG~G~G----G~c~~KD~~------~l~~~a 305 (478)
T 3g79_A 244 LQIAAINQLALYCEAMG-INVYDVRTGVD---SL----KGEGITRAVLWPGAGVG----GHCLTKDTY------HLERGV 305 (478)
T ss_dssp HHHHHHHHHHHHHHHTT-CCHHHHHHHHH---TS----CCSSSCCCCCCCCSCCC----SSHHHHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHC---CC----chhhhccccCCCCCCcc----hhhHHHHHH------HHHHHH
Confidence 99999999999999999 99999999873 21 21122222222211122 234455553 677889
Q ss_pred HHcCCC-------cchHHHH
Q 011501 275 ADLSVA-------APTIESS 287 (484)
Q Consensus 275 ~~~gvp-------~p~~~~a 287 (484)
+++|++ .|++.++
T Consensus 306 ~~~g~~~~~~~~~~~li~~~ 325 (478)
T 3g79_A 306 KIGRGELDYPEGADSIYVLA 325 (478)
T ss_dssp TTSSCCCCCCSSCCCHHHHH
T ss_pred HHcCCCcccccchhHHHHHH
Confidence 999987 8888765
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-27 Score=240.69 Aligned_cols=250 Identities=15% Similarity=0.111 Sum_probs=194.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-----------hcCCCCeeecCCHhHHHhhcCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------QEGNLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~e~~~~l~~ad 71 (484)
+|||+|||+|.||.++|..|++ |++|++||+++++++.+.+... ..+..+++.+++++++++. +|
T Consensus 36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~---aD 111 (432)
T 3pid_A 36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRN---AD 111 (432)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTT---CS
T ss_pred CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhC---CC
Confidence 5799999999999999999998 9999999999999988765210 0000146778899888887 99
Q ss_pred EEEEecCCCc----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcC-
Q 011501 72 VIIMLVKAGS----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYG- 140 (484)
Q Consensus 72 vIi~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g- 140 (484)
+||+|||++. .++++++++.+ +++|++||+.||+.|.+++++.+.+.+.++ ..+|+++++..+..+
T Consensus 112 vViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v--~~sPe~~~~G~A~~~~ 188 (432)
T 3pid_A 112 YVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV--IFSPEFLREGRALYDN 188 (432)
T ss_dssp EEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE--EECCCCCCTTSHHHHH
T ss_pred EEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE--eecCccCCcchhhhcc
Confidence 9999999872 58888899999 999999999999999999999988876654 449999998777544
Q ss_pred --C-ccccCCCHHHHHHHHHHHHH--HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 141 --P-SLMPGGSFEAYKHIEDILLK--VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 141 --~-~i~~gg~~~~~~~v~~ll~~--i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
| .+++||+++.++++.++|.. ++.. ..+++++.++|+++|+++|.+.+..+++++|+..+|++.| +|+
T Consensus 189 l~p~rIvvG~~~~~~~~~~~ll~~~~~~~~------~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~G-iD~ 261 (432)
T 3pid_A 189 LHPSRIVIGERSARAERFADLLKEGAIKQD------IPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQG-LNS 261 (432)
T ss_dssp HSCSCEEESSCSHHHHHHHHHHHHHCSSSS------CCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred cCCceEEecCCHHHHHHHHHHHHhhhccCC------CeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCH
Confidence 3 78999999999999999987 3322 1256678999999999999999999999999999999999 999
Q ss_pred HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 216 EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
+++.+++. .. .. +....+..+-.|++.++.... |.+ .+...|++.+++.++
T Consensus 262 ~~v~~~~~---~d---pr---ig~~~~~pg~G~GG~C~pkD~-----------~~L-~~~~~~~~~~li~~~ 312 (432)
T 3pid_A 262 KQIIEGVC---LD---PR---IGNHYNNPSFGYGGYCLPKDT-----------KQL-LANYESVPNNIIAAI 312 (432)
T ss_dssp HHHHHHHH---TS---TT---TCSSSCCCCSCCCTTTHHHHH-----------HHH-HHHTTTSCCSHHHHH
T ss_pred HHHHHHHc---cC---CC---CCcccCCCCCCCcccchhhhH-----------HHH-HHHhcCCchhHHHHH
Confidence 99999873 21 11 111122222235665554433 222 233468998888766
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.5e-26 Score=238.91 Aligned_cols=257 Identities=12% Similarity=0.088 Sum_probs=198.3
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHH------------hhhcCCCCeeecCCHhHHHh
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVER------------AKQEGNLPLYGFHDPESFVH 65 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~------------~~~~~~~~~~~~~s~~e~~~ 65 (484)
|+ +|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+. .......++..++++++.++
T Consensus 2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~ 81 (467)
T 2q3e_A 2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIK 81 (467)
T ss_dssp CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHh
Confidence 54 57999999999999999999999 89999999999998875321 00000013667788888888
Q ss_pred hcCCCcEEEEecCCCch--------------HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 66 SIQKPRVIIMLVKAGSP--------------VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~--------------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
. +|+||+|||++.. +.++++++.+.+.++++||++||..|.+++++.+.+.+.+..+++.+++
T Consensus 82 ~---aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~ 158 (467)
T 2q3e_A 82 E---ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVL 158 (467)
T ss_dssp H---CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEE
T ss_pred c---CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEE
Confidence 7 9999999998754 5677788999999999999999999999988888888776555677777
Q ss_pred CCHHhhhcCC-c--------cccCC-----CHHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011501 132 GGEEGARYGP-S--------LMPGG-----SFEAYKHIEDILLKV-AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD 196 (484)
Q Consensus 132 gg~~~a~~g~-~--------i~~gg-----~~~~~~~v~~ll~~i-~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~ 196 (484)
++++.+..|. . +++|| ++++.+.++++|+.+ +.. ++++++.++++.+|++.|.+.+..
T Consensus 159 ~~Pe~~~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~-------~~~~~~~~~ae~~Kl~~N~~~a~~ 231 (467)
T 2q3e_A 159 SNPEFLAEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPRE-------KILTTNTWSSELSKLAANAFLAQR 231 (467)
T ss_dssp ECCCCCCTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGG-------GEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHhhcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCC-------eEEecCHHHHHHHHHHHHHHHHHH
Confidence 7777777776 3 77888 788899999999998 544 388889999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHH
Q 011501 197 MQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 276 (484)
Q Consensus 197 ~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~ 276 (484)
+++++|+..++++.| +|++++.+++..+.. +....+..+..|++.+ +.||+. +.+..|++
T Consensus 232 ia~~nE~~~l~~~~G-id~~~v~~~~~~~~~---------~~~~~~~pg~g~gg~c----~~kD~~------~l~~~a~~ 291 (467)
T 2q3e_A 232 ISSINSISALCEATG-ADVEEVATAIGMDQR---------IGNKFLKASVGFGGSC----FQKDVL------NLVYLCEA 291 (467)
T ss_dssp HHHHHHHHHHHHHHT-CCHHHHHHHHHTSTT---------TCSSSCCCCSCCCSSS----HHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCHHHHHHHHcCCCC---------CCccccCCCCCCCCcc----HHHHHH------HHHHHHHH
Confidence 999999999999999 999999998743211 1111222221244433 335553 67788999
Q ss_pred cCCC--cchHHHH
Q 011501 277 LSVA--APTIESS 287 (484)
Q Consensus 277 ~gvp--~p~~~~a 287 (484)
+|+| .+++.++
T Consensus 292 ~g~~~~~~~~~~~ 304 (467)
T 2q3e_A 292 LNLPEVARYWQQV 304 (467)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCchHHHHHHHH
Confidence 9987 4555543
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=222.04 Aligned_cols=246 Identities=14% Similarity=0.145 Sum_probs=191.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|+|+|||+|.||..||.+|+++|++|++||| ++++.+.+.+.+ +. .+++++++. +|+||+|||++.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g-------~~--~~~~~~~~~---aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG-------VT--ETSEEDVYS---CPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT-------CE--ECCHHHHHT---SSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCC-------Cc--CCHHHHHhc---CCEEEEECCCHH
Confidence 4899999999999999999999999999999 777777766542 34 677788776 999999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLK 161 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~ 161 (484)
.++. +.++.+.+++ +|||+++..+.+++++.+.+.+.| |+++|+++++..+..|..++++|+.+ +.+++ |+.
T Consensus 69 ~~~~-~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~~~~~g~~~--~~~~~-l~~ 140 (264)
T 1i36_A 69 ALGA-ARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDA--EEFMK-LNR 140 (264)
T ss_dssp HHHH-HHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCEEEEESTTH--HHHHG-GGG
T ss_pred HHHH-HHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCeEEecCCcH--HHhhh-HHH
Confidence 5655 4677777755 999999999888888888777666 89999999998887787677788765 78888 999
Q ss_pred HhccCCCCCCceEEeCC-chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc
Q 011501 162 VAAQVPDSGPCVTYVGK-GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD 240 (484)
Q Consensus 162 i~~~~~~~~~~~~~~G~-~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~ 240 (484)
++.+ ++++++ .|.+..+|+++|.+.+..+.+++|++.++++.| ++++ ..+.+. .+.+.+++. .. +
T Consensus 141 ~g~~-------~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G-~~~~-~~~~~~---~~~g~~~~~-~~-~ 206 (264)
T 1i36_A 141 YGLN-------IEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEED-VLEMLE---YTEGNDFRE-SA-I 206 (264)
T ss_dssp GTCE-------EEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHH-HHHHHH---TTSCSSTHH-HH-H
T ss_pred cCCe-------eEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHH-HHHHHH---HhcCccHHH-HH-H
Confidence 9865 588887 799999999999999999999999999999999 9986 666653 322223332 22 2
Q ss_pred ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 241 IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 241 ~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.+.. .++.+++. ..++++ .+++.++++ +|+|++.. +.+.+...
T Consensus 207 ~~~~-~~~~~g~~---~~~~~~------~~~~~a~~~-v~~p~~~~-v~~~~~~~ 249 (264)
T 1i36_A 207 SRLK-SSCIHARR---RYEEMK------EVQDMLAEV-IDPVMPTC-IIRIFDKL 249 (264)
T ss_dssp HHHH-HHHHTHHH---HHHHHH------HHHHHHHTT-SCCSHHHH-HHHHHHHH
T ss_pred HHhc-CCCCcchh---hHHHHH------HHHHHHHHh-cCchHHHH-HHHHHHHH
Confidence 2222 23455554 334543 678999999 99998764 45555444
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=236.12 Aligned_cols=256 Identities=15% Similarity=0.118 Sum_probs=193.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhh---cC---------CCCeeecCCHhHHHhhc
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQ---EG---------NLPLYGFHDPESFVHSI 67 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~---~~---------~~~~~~~~s~~e~~~~l 67 (484)
++|||+|||+|.||.++|.+|+++ |++|++||+++++++.+.+.... .+ ..++..++++++.++.
T Consensus 8 ~~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~- 86 (481)
T 2o3j_A 8 KVSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAE- 86 (481)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhc-
Confidence 357999999999999999999998 79999999999998887641100 00 0025667788787777
Q ss_pred CCCcEEEEecCCCc--------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH-cCC------eEE
Q 011501 68 QKPRVIIMLVKAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE-LGL------LYL 126 (484)
Q Consensus 68 ~~advIi~~vp~~~--------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~------~~i 126 (484)
+|+||+|||++. .+.++++++.++++++++||++||..|.+++++.+.+.+ .++ .+.
T Consensus 87 --aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~ 164 (481)
T 2o3j_A 87 --ADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVL 164 (481)
T ss_dssp --CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEE
T ss_pred --CCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEE
Confidence 999999998874 388888999999999999999999999999988888877 542 245
Q ss_pred eccCCCCHHhhh---cCC-ccccCCCH-----HHHHHHHHHHHHHhc-cCCCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011501 127 GMGVSGGEEGAR---YGP-SLMPGGSF-----EAYKHIEDILLKVAA-QVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD 196 (484)
Q Consensus 127 ~~pv~gg~~~a~---~g~-~i~~gg~~-----~~~~~v~~ll~~i~~-~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~ 196 (484)
.+|....+..+. ..+ .+++||+. ++++.++++|+.++. . ++++++.++++++|++.|.+.+..
T Consensus 165 ~~Pe~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~-------~~~~~d~~~ae~~Kl~~N~~~a~~ 237 (481)
T 2o3j_A 165 SNPEFLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRN-------RIITTNTWSSELSKLVANAFLAQR 237 (481)
T ss_dssp ECCCCCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGG-------GEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred eCcccccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCC-------eEEecCHHHHHHHHHHHHHHHHHH
Confidence 566655443332 223 67788754 678899999999884 4 378888999999999999999999
Q ss_pred HhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHH
Q 011501 197 MQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAAD 276 (484)
Q Consensus 197 ~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~ 276 (484)
+++++|+..++++.| +|++++.+++. .+. ++....+..+..|++. -+.||+. +.+..|++
T Consensus 238 ia~~nE~~~la~~~G-id~~~v~~~~~---~~~------ri~~~~~~pg~g~gg~----c~~KD~~------~l~~~A~~ 297 (481)
T 2o3j_A 238 ISSINSISAVCEATG-AEISEVAHAVG---YDT------RIGSKFLQASVGFGGS----CFQKDVL------SLVYLCES 297 (481)
T ss_dssp HHHHHHHHHHHHHHS-CCHHHHHHHHH---TST------TTCSSSCCCCSCCCSS----SHHHHHH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cCHHHHHHHHc---cCC------CCCCCCCCCCCccCCc----cHHHHHH------HHHHHHHH
Confidence 999999999999999 99999998873 221 1111122221112333 3445653 67788999
Q ss_pred cCCC--cchHHHH
Q 011501 277 LSVA--APTIESS 287 (484)
Q Consensus 277 ~gvp--~p~~~~a 287 (484)
+|+| +|++.++
T Consensus 298 ~g~~~~~~l~~~~ 310 (481)
T 2o3j_A 298 LNLPQVADYWQGV 310 (481)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cCCCccchHHHHH
Confidence 9999 8988765
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-25 Score=228.85 Aligned_cols=202 Identities=13% Similarity=0.152 Sum_probs=169.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh---------------cCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ---------------EGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~---------------~~~~~~~~~~s~~e~~~~l~ 68 (484)
.|..|||+|.||.+||.+|+++||+|++||+++++++.+.+.... .+ ++..+++ ++
T Consensus 12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g--~l~~ttd-------~~ 82 (431)
T 3ojo_A 12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSG--KLKVSTT-------PE 82 (431)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESS-------CC
T ss_pred CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccC--ceEEeCc-------hh
Confidence 579999999999999999999999999999999999988752100 00 2333333 23
Q ss_pred CCcEEEEecCCCc-----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH-cC------CeEEeccC
Q 011501 69 KPRVIIMLVKAGS-----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE-LG------LLYLGMGV 130 (484)
Q Consensus 69 ~advIi~~vp~~~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g------~~~i~~pv 130 (484)
.+|+||+|||++. .+..+.+++.+++++|++||+.||+.|.+++++.+.+.+ .| +.++++|.
T Consensus 83 ~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe 162 (431)
T 3ojo_A 83 ASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE 162 (431)
T ss_dssp CCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred hCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence 4999999999986 267778999999999999999999999999998876544 55 37899998
Q ss_pred CCCHHhhhcC---C-ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 011501 131 SGGEEGARYG---P-SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV 206 (484)
Q Consensus 131 ~gg~~~a~~g---~-~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l 206 (484)
+..+..+..+ | .++.|+++++.+.++++|+.++... +++|+.++|+++|+++|.+.+..+++++|+..+
T Consensus 163 ~~~~G~A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~-------~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l 235 (431)
T 3ojo_A 163 RVLPGKILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGE-------MIETDARTAEMSKLMENTYRDVNIALANELTKI 235 (431)
T ss_dssp CCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSC-------EEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcchhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCc-------EEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765544322 3 7889999999999999999998653 788999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHH
Q 011501 207 LKSVGKLSNEELQQVF 222 (484)
Q Consensus 207 ~~~~g~~~~~~i~~~~ 222 (484)
|++.| +|++++.+++
T Consensus 236 ~e~~G-iD~~~v~~~~ 250 (431)
T 3ojo_A 236 CNNLN-INVLDVIEMA 250 (431)
T ss_dssp HHHTT-CCHHHHHHHH
T ss_pred HHHcC-CCHHHHHHHH
Confidence 99999 9999999987
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=227.88 Aligned_cols=261 Identities=15% Similarity=0.105 Sum_probs=195.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh---------------cCCCCeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ---------------EGNLPLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~---------------~~~~~~~~~~s~~e~~~~l 67 (484)
.|||+|||+|.||.++|.+|+++||+|++||+++++++.+.+.+.. .+ ++..++++++.++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~--~l~~ttd~~~a~~~- 84 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAG--RLRFSTDIEAAVAH- 84 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEECCHHHHHHH-
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccC--CEEEECCHHHHhhc-
Confidence 4799999999999999999999999999999999999888753100 01 36777888888777
Q ss_pred CCCcEEEEecCCC---------chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc---CCeE-EeccCCCCH
Q 011501 68 QKPRVIIMLVKAG---------SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL---GLLY-LGMGVSGGE 134 (484)
Q Consensus 68 ~~advIi~~vp~~---------~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~---g~~~-i~~pv~gg~ 134 (484)
+|+||+|||++ ..++++++++.++++++++||+.||+.|.+++++.+.+.+. | .| ++.++.++|
T Consensus 85 --aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~P 161 (478)
T 2y0c_A 85 --GDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNP 161 (478)
T ss_dssp --CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECC
T ss_pred --CCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEECh
Confidence 99999999986 68999999999999999999999999999998887777653 3 12 334455555
Q ss_pred HhhhcCC---------ccccCCC-H----HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHH
Q 011501 135 EGARYGP---------SLMPGGS-F----EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLI 200 (484)
Q Consensus 135 ~~a~~g~---------~i~~gg~-~----~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~ 200 (484)
+.+..|. .+++|++ + ++.+.++++|+.+..+ ..++++++.+.+++.|++.|.+.+..++++
T Consensus 162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~ 236 (478)
T 2y0c_A 162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRN-----HERTLYMDVRSAEFTKYAANAMLATRISFM 236 (478)
T ss_dssp CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSS-----SCCEEEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhcc-----CCeEEcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444443 5777775 5 7889999999887631 124788889999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCC
Q 011501 201 AEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA 280 (484)
Q Consensus 201 ~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp 280 (484)
+|+..++++.| +|++++.+.+.. .+ ++....+..+-.+++.+. .+|.. ..+..|+++|++
T Consensus 237 nE~~~la~~~G-id~~~v~~~i~~------~~---rig~~~~~pG~g~gg~c~----~kD~~------~l~~~A~~~gv~ 296 (478)
T 2y0c_A 237 NELANLADRFG-ADIEAVRRGIGS------DP---RIGYHFLYAGCGYGGSCF----PKDVE------ALIRTADEHGQS 296 (478)
T ss_dssp HHHHHHHHHTT-CCHHHHHHHHHT------ST---TTCSTTCCCSSCCCSSSH----HHHHH------HHHHHHHHTTCC
T ss_pred HHHHHHHHHhC-CCHHHHHHHHhc------CC---ccCcccCCCCcccccCcC----HHHHH------HHHHHHHHcCCC
Confidence 99999999999 999998877631 11 011011111111233322 23332 677899999999
Q ss_pred cchHHHHHHHHHHhc
Q 011501 281 APTIESSLDARFLSG 295 (484)
Q Consensus 281 ~p~~~~av~~r~~s~ 295 (484)
+|++.++ .+.+...
T Consensus 297 ~pl~~~v-~~in~~~ 310 (478)
T 2y0c_A 297 LQILKAV-SSVNATQ 310 (478)
T ss_dssp CHHHHHH-HHHHHHH
T ss_pred cHHHHHH-HHHHHHh
Confidence 9988764 4444443
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=225.44 Aligned_cols=253 Identities=17% Similarity=0.187 Sum_probs=187.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh---------------hcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------QEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~---------------~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|.||.++|..|+++|++|++||+++++++.+.+.+. ..+ ++..++++++.++.
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g--~l~~t~~~~~~~~~-- 76 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccC--ceEEeCCHHHHhcc--
Confidence 48999999999999999999999999999999999888765210 011 36677888887777
Q ss_pred CCcEEEEecCCCch---------HHHHHHHHhhhcCC---CCEEEecCCCChHH-HHHHHHHHHHc-CCeE-EeccCCCC
Q 011501 69 KPRVIIMLVKAGSP---------VDQTIKTLSVYMEK---GDCIIDGGNEWYEN-TERRQKAVAEL-GLLY-LGMGVSGG 133 (484)
Q Consensus 69 ~advIi~~vp~~~~---------v~~vl~~l~~~l~~---g~iiId~st~~~~~-~~~~~~~l~~~-g~~~-i~~pv~gg 133 (484)
+|+||+|||++.. ++++++++.+.+++ +++||+.||..+.+ .+.+.+.+.+. |..+ ++.++.++
T Consensus 77 -aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~ 155 (436)
T 1mv8_A 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (436)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEEC
Confidence 9999999999865 89999999999988 99999999999888 55566666654 5443 33344444
Q ss_pred HHhhhcC--------C-ccccCCC-HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHH
Q 011501 134 EEGARYG--------P-SLMPGGS-FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEA 203 (484)
Q Consensus 134 ~~~a~~g--------~-~i~~gg~-~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea 203 (484)
++....| + .++.|++ +++.+.++++++.++.. +++++.+.++.+|++.|.+.+..+++++|+
T Consensus 156 Pe~~~~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~--------v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~ 227 (436)
T 1mv8_A 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP--------IIRKTVEVAEMIKYTCNVWHAAKVTFANEI 227 (436)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC--------EEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCC--------EEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333 2 5677775 88899999999988753 344778999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcch
Q 011501 204 YDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 283 (484)
Q Consensus 204 ~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~ 283 (484)
..++++.| ++++++.+++. ... .+. .....+..+..+++.+. .+|.. ..+..|+++|+++|+
T Consensus 228 ~~l~~~~G-id~~~v~~~~~---~~~--r~~--~~~~~~~pg~g~gg~~~----~kD~~------~l~~~a~~~g~~~pl 289 (436)
T 1mv8_A 228 GNIAKAVG-VDGREVMDVIC---QDH--KLN--LSRYYMRPGFAFGGSCL----PKDVR------ALTYRASQLDVEHPM 289 (436)
T ss_dssp HHHHHHTT-SCHHHHHHHHT---TCT--TTT--TSSTTCSCCSCCCSSSH----HHHHH------HHHHHHHHTTCCCTT
T ss_pred HHHHHHhC-CCHHHHHHHhc---CCC--CCC--CcccCCCCcccccCcCc----HhhHH------HHHHHHHHcCCCcHH
Confidence 99999999 99999888763 111 000 00111111112333332 23332 677899999999998
Q ss_pred HHHH
Q 011501 284 IESS 287 (484)
Q Consensus 284 ~~~a 287 (484)
+.++
T Consensus 290 ~~~v 293 (436)
T 1mv8_A 290 LGSL 293 (436)
T ss_dssp GGGH
T ss_pred HHHH
Confidence 8765
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=218.03 Aligned_cols=288 Identities=14% Similarity=0.113 Sum_probs=203.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---CC----CeeecCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---NL----PLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~~~l~~advIi~ 75 (484)
+|||+|||+|.||.++|..|+++|++|++|+|++++++.+.+.+.+.. +. ++..+++++++++. +|+||+
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~---aDvVil 105 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEG---VTDILI 105 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTT---CCEEEE
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhc---CCEEEE
Confidence 479999999999999999999999999999999999988887643210 00 25667888888877 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHH----HHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHH
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERR----QKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFE 150 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~----~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~ 150 (484)
+||+. .++++++++.++++++++||+++++....+..+ .+.+....+.++.+|.+..+....... .++.+.+++
T Consensus 106 aVp~~-~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~ 184 (356)
T 3k96_A 106 VVPSF-AFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQ 184 (356)
T ss_dssp CCCHH-HHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHH
T ss_pred CCCHH-HHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHH
Confidence 99986 899999999999999999999988654443222 333332456678888776654443333 445667899
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCC-----------------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCC
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGK-----------------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKL 213 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~-----------------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~ 213 (484)
..+.++++|+..+-++ +...+ .|.+..+|+..|...+.+...++|+..++++.| .
T Consensus 185 ~~~~v~~lf~~~~~rv-------~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G-~ 256 (356)
T 3k96_A 185 FSKDLIERLHGQRFRV-------YKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFG-G 256 (356)
T ss_dssp HHHHHHHHHCCSSEEE-------EEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHhCCCCeeE-------EEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhC-C
Confidence 9999999998655432 33222 256667789999999999999999999999999 9
Q ss_pred CHHHHHHHHHhhccCcchh--hhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHH----HHHHHcCCCcchHHHH
Q 011501 214 SNEELQQVFSEWNKGELLS--FLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTV----QQAADLSVAAPTIESS 287 (484)
Q Consensus 214 ~~~~i~~~~~~~~~g~~~s--~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~----~~A~~~gvp~p~~~~a 287 (484)
+++++.++ .|.++- ......++..+.+..+..+..++.+.+.++++.+|..++ +.|+++|+++|++. +
T Consensus 257 ~~~t~~gl-----~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~-~ 330 (356)
T 3k96_A 257 KQETLTGL-----AGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTF-Q 330 (356)
T ss_dssp CHHHHTST-----TTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHH-H
T ss_pred ChHhhccc-----chhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHH-H
Confidence 99987653 222221 111111111111111122345677777788899997665 46899999999766 5
Q ss_pred HHHHHHhcCchHHHHHHHhccC
Q 011501 288 LDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 288 v~~r~~s~~~~~r~~~~~~~~~ 309 (484)
|++.+... ++.+..+..++..
T Consensus 331 v~~il~~~-~~~~~~~~~l~~r 351 (356)
T 3k96_A 331 VHRILHED-LDPQQAVQELLER 351 (356)
T ss_dssp HHHHHHSC-CCHHHHHHHHHSC
T ss_pred HHHHHhCC-CCHHHHHHHHHcC
Confidence 66665554 4566666666643
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-22 Score=208.37 Aligned_cols=251 Identities=14% Similarity=0.057 Sum_probs=183.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc-----------CCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE-----------GNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~-----------~~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||+|.||.++|.+|++ |++|++|||++++++.+.+.+..- ...++..++++++.++. +|+
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~---aDv 76 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcC---CCE
Confidence 489999999999999999999 999999999999998876533100 00024566788777777 999
Q ss_pred EEEecCCCc----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhh---c
Q 011501 73 IIMLVKAGS----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGAR---Y 139 (484)
Q Consensus 73 Ii~~vp~~~----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~---~ 139 (484)
||+|||++. .++++++++.+ +.++++||+.||..+.+++++.+.+.+. .++.+|....+..+. .
T Consensus 77 viiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~ 153 (402)
T 1dlj_A 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (402)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred EEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhccc
Confidence 999999984 58999999999 8999999999999999998888766543 677788776654433 2
Q ss_pred CC-ccccCCCH-------HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Q 011501 140 GP-SLMPGGSF-------EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 211 (484)
Q Consensus 140 g~-~i~~gg~~-------~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g 211 (484)
.+ .+++|++. +..+.+.++|..-..+. ..++++++.++++++|++.|.+.+..+++++|+..+|++.|
T Consensus 154 ~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~G 229 (402)
T 1dlj_A 154 YPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKN----NVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRK 229 (402)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCS----CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccC----CceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33 58888876 55566666665422110 11377888999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 212 KLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 212 ~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
+|++++.+++. .++ + +....+..+ ++|...-+.+|.. +.+..| .|+++|++.++
T Consensus 230 -id~~~v~~~~~---~~~---r---i~~~~~~pg----~g~gg~c~~kD~~------~l~~~a--~~~~~~l~~~~ 283 (402)
T 1dlj_A 230 -LNSHMIIQGIS---YDD---R---IGMHYNNPS----FGYGGYSLPKDTK------QLLANY--NNIPQTLIEAI 283 (402)
T ss_dssp -CCHHHHHHHHH---TST---T---TCSSSCCCC----SSCCSSHHHHHHH------HHHHHH--TTSSCSHHHHH
T ss_pred -CCHHHHHHHhc---cCC---C---CCcCCCCCC----CccCCccHHhhHH------HHHHHh--cCCChHHHHHH
Confidence 99999988873 222 1 111111111 1233334555542 344445 38999988765
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=8e-24 Score=203.91 Aligned_cols=177 Identities=14% Similarity=0.129 Sum_probs=143.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH--------------HHHHHHHhhhcCCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK--------------VDETVERAKQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~--------------~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
.++|||||+|.||.+||.+|+++|++|++|||++++ .+++.+.. +...+.+++++++.
T Consensus 19 ~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~e~~~~-- 90 (245)
T 3dtt_A 19 GMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH------PHVHLAAFADVAAG-- 90 (245)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGS------TTCEEEEHHHHHHH--
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc------CceeccCHHHHHhc--
Confidence 479999999999999999999999999999999987 44443321 12346788888887
Q ss_pred CCcEEEEecCCCchHHHHHHHH-hhhcCCCCEEEecCC-----------CChHHHHHHHHHHHH--------cCCeEEec
Q 011501 69 KPRVIIMLVKAGSPVDQTIKTL-SVYMEKGDCIIDGGN-----------EWYENTERRQKAVAE--------LGLLYLGM 128 (484)
Q Consensus 69 ~advIi~~vp~~~~v~~vl~~l-~~~l~~g~iiId~st-----------~~~~~~~~~~~~l~~--------~g~~~i~~ 128 (484)
+|+||+|||+. .+.+++.++ .+.+ ++++|||+++ ..|.++....+.+++ +++.++++
T Consensus 91 -aDvVilavp~~-~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a 167 (245)
T 3dtt_A 91 -AELVVNATEGA-SSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNA 167 (245)
T ss_dssp -CSEEEECSCGG-GHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCH
T ss_pred -CCEEEEccCcH-HHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCH
Confidence 99999999987 566777788 7777 8999999994 444444444455544 37889999
Q ss_pred cCCCCHHhhhcCC-ccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011501 129 GVSGGEEGARYGP-SLMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD 196 (484)
Q Consensus 129 pv~gg~~~a~~g~-~i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~ 196 (484)
|+++++..+..|+ .++++| ++++++.++++|+.++.+. ++++|+.|+|+.+|+++|.+...+
T Consensus 168 ~v~~~~~~a~~g~~~~~v~g~d~~~~~~v~~ll~~~g~~~------~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 168 SLMVDPGRAAGGDHSVFVSGNDAAAKAEVATLLKSLGHQD------VIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp HHHHCGGGTGGGCCCEEEECSCHHHHHHHHHHHHHTTCCC------EEEEESGGGHHHHHTTHHHHHHHH
T ss_pred HHhcCccccCCCCeeEEEECCCHHHHHHHHHHHHHcCCCc------eeccCcHHHHHHhhhhHHHHHHHH
Confidence 9999999888888 777755 6999999999999999642 689999999999999999877555
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-22 Score=202.76 Aligned_cols=252 Identities=15% Similarity=0.079 Sum_probs=182.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH---------------hhhcCCCCeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER---------------AKQEGNLPLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~---------------~~~~~~~~~~~~~s~~e~~~~l 67 (484)
|.+|+|||+|.||.++|..|+++||+|+++|.++++++.+++. ....+ +++.++++++.++.
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g--~l~~tt~~~~ai~~- 97 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSG--RLSFAESAEEAVAA- 97 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEECSSHHHHHHT-
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcC--CeeEEcCHHHHHhc-
Confidence 4689999999999999999999999999999999998877531 11111 46778899888887
Q ss_pred CCCcEEEEecCCCc---------hHHHHHHHHhhhcC---CCCEEEecCCCChHHHHHHHHHHH-Hc----CCeEEeccC
Q 011501 68 QKPRVIIMLVKAGS---------PVDQTIKTLSVYME---KGDCIIDGGNEWYENTERRQKAVA-EL----GLLYLGMGV 130 (484)
Q Consensus 68 ~~advIi~~vp~~~---------~v~~vl~~l~~~l~---~g~iiId~st~~~~~~~~~~~~l~-~~----g~~~i~~pv 130 (484)
+|++|+|||++. .++++.+.+.++++ +|++||..||+.|.+++++...+. +. .+....+|-
T Consensus 98 --ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PE 175 (444)
T 3vtf_A 98 --TDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPE 175 (444)
T ss_dssp --SSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCC
T ss_pred --CCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcc
Confidence 999999998752 46777788887774 689999999999999988765443 32 234444564
Q ss_pred CCCHHhh----hcCCccccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHH
Q 011501 131 SGGEEGA----RYGPSLMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYD 205 (484)
Q Consensus 131 ~gg~~~a----~~g~~i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~ 205 (484)
.-.+-.+ ...+.++.|+ ++.+.+.++.+++.+... ++. ....+++++|++.|.+.+..+++++|...
T Consensus 176 rl~eG~a~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~-------~~~-~~~~~AE~~Kl~eN~~ravnIa~~NEla~ 247 (444)
T 3vtf_A 176 FLREGSALEDFFKPDRIVIGAGDERAASFLLDVYKAVDAP-------KLV-MKPREAELVKYASNVFLALKISFANEVGL 247 (444)
T ss_dssp CCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSC-------EEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCccccccccCCcEEEcCCCHHHHHHHHHHHhccCCC-------EEE-echhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111 2223556665 677778888888766532 244 45689999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHH
Q 011501 206 VLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIE 285 (484)
Q Consensus 206 l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~ 285 (484)
+|++.| +|..++.+.+.. ... +....+..+-.+++.++-... ++....|+++|++.+++.
T Consensus 248 ice~~G-iDv~eV~~a~~~--d~r-------ig~~~l~PG~G~GG~CipkD~----------~~L~~~a~~~g~~~~li~ 307 (444)
T 3vtf_A 248 LAKRLG-VDTYRVFEAVGL--DKR-------IGRHYFGAGLGFGGSCFPKDT----------LAFIRFGESLGLEMAISK 307 (444)
T ss_dssp HHHHTT-CCHHHHHHHHHT--STT-------SCSTTCCCSSCCCTTTHHHHH----------HHHHHHHHHTTCCCHHHH
T ss_pred HHHHcC-CCHHHHHHHhcc--CCC-------CCCCCCCCCCCCCCcccCcCH----------HHHHHHHHhcCCCHHHHH
Confidence 999999 999999888731 011 111223333345666554332 145677899999999887
Q ss_pred HH
Q 011501 286 SS 287 (484)
Q Consensus 286 ~a 287 (484)
++
T Consensus 308 a~ 309 (444)
T 3vtf_A 308 AV 309 (444)
T ss_dssp HH
T ss_pred hh
Confidence 65
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-22 Score=198.14 Aligned_cols=267 Identities=17% Similarity=0.166 Sum_probs=175.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC------CeeecCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL------PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~------~~~~~~s~~e~~~~l~~advIi 74 (484)
|+||||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+...... ++.. .+.+++.+.++.+|+||
T Consensus 1 ~~~m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vi 79 (316)
T 2ew2_A 1 SNAMKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPI-FSPEEIDHQNEQVDLII 79 (316)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCE-ECGGGCCTTSCCCSEEE
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEeccee-ecchhhcccCCCCCEEE
Confidence 4567999999999999999999999999999999999988887653210000 0111 13445544333599999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCH--HhhhcCC-ccc--c
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGE--EGARYGP-SLM--P 145 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~--~~a~~g~-~i~--~ 145 (484)
+|||+. .+.++++++.+.+.++++||++++... ..+.+.+.+.+. |..++++++++.. .....|. .++ .
T Consensus 80 ~~v~~~-~~~~v~~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~ 157 (316)
T 2ew2_A 80 ALTKAQ-QLDAMFKAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENID 157 (316)
T ss_dssp ECSCHH-HHHHHHHHHGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESS
T ss_pred EEeccc-cHHHHHHHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecC
Confidence 999986 789999999999999999999988653 334444444433 2233344444321 1223454 443 4
Q ss_pred CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH---------------------HHHHHhHHHHHH
Q 011501 146 GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAY 204 (484)
Q Consensus 146 gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i---------------------~~~~~~~~~Ea~ 204 (484)
+++++..+.++++|+.++.+ +.+.++.+.+.+.|++.|.+ .....+++.|+.
T Consensus 158 ~~~~~~~~~~~~ll~~~g~~-------~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~ 230 (316)
T 2ew2_A 158 PSGKKFALEVVDVFQKAGLN-------PSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFA 230 (316)
T ss_dssp GGGHHHHHHHHHHHHHTTCC-------EEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhCCCC-------cEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHH
Confidence 56888999999999999854 47777889999999999964 245678899999
Q ss_pred HHHHHhCCCCH--HHHHHHHHhhccCc--chhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCC
Q 011501 205 DVLKSVGKLSN--EELQQVFSEWNKGE--LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVA 280 (484)
Q Consensus 205 ~l~~~~g~~~~--~~i~~~~~~~~~g~--~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp 280 (484)
.++++.| +++ +.+.+.+..+.... ..++ .++..+++ ..++..+ +.+++ | +.++.|+++|+|
T Consensus 231 ~la~~~G-~~~~~~~~~~~~~~~~~~~~~~~~~-~sm~~d~~------~~g~~~E-~~~~~-----~-~~~~~a~~~gv~ 295 (316)
T 2ew2_A 231 AVAEKEA-IYLDQAEVYTHIVQTYDPNGIGLHY-PSMYQDLI------KNHRLTE-IDYIN-----G-AVWRKGQKYNVA 295 (316)
T ss_dssp HHHHHTT-CCCCHHHHHHHHHHTTCTTTTTTSC-CHHHHHHT------TTCCCCS-GGGTH-----H-HHHHHHHHHTCC
T ss_pred HHHHHcC-CCCChHHHHHHHHHHhccccCCCCC-cHHHHHHH------HcCCcch-HHHHh-----h-HHHHHHHHhCCC
Confidence 9999998 886 45666664322111 1110 01111120 1111122 23333 3 688999999999
Q ss_pred cchHHHHHHHHHH
Q 011501 281 APTIESSLDARFL 293 (484)
Q Consensus 281 ~p~~~~av~~r~~ 293 (484)
+|+... +++.+.
T Consensus 296 ~P~~~~-~~~~~~ 307 (316)
T 2ew2_A 296 TPFCAM-LTQLVH 307 (316)
T ss_dssp CHHHHH-HHHHHH
T ss_pred CCHHHH-HHHHHH
Confidence 998764 455443
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-22 Score=203.11 Aligned_cols=277 Identities=13% Similarity=0.074 Sum_probs=178.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---C----CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---N----LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~----~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+||+|||+|.||.+||.+|+++|++|++|||++++++.+.+.+.... + .++..+.+++++++. +|+||+|
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---aDvVila 92 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEIILFV 92 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSSEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcC---CCEEEEC
Confidence 38999999999999999999999999999999999888876531100 0 025566788887776 9999999
Q ss_pred cCCCchHHHHHHH----HhhhcCC-CCEEEecCCC-ChHHHHHHHHHHHHc-C---CeEEeccCCCCHHhhhcCC---cc
Q 011501 77 VKAGSPVDQTIKT----LSVYMEK-GDCIIDGGNE-WYENTERRQKAVAEL-G---LLYLGMGVSGGEEGARYGP---SL 143 (484)
Q Consensus 77 vp~~~~v~~vl~~----l~~~l~~-g~iiId~st~-~~~~~~~~~~~l~~~-g---~~~i~~pv~gg~~~a~~g~---~i 143 (484)
||+ .++++++.+ +.+.+.+ +++||+++++ .+...+.+.+.+.+. + ..++.+|....+. ..|. .+
T Consensus 93 v~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~--~~g~~~~~~ 169 (366)
T 1evy_A 93 IPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV--ATGVFTCVS 169 (366)
T ss_dssp CCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH--HTTCCEEEE
T ss_pred CCh-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH--HhCCceEEE
Confidence 997 588999988 9888888 9999999854 443333344444433 3 2334444332211 2333 34
Q ss_pred ccCCCHHHHHHHHHHHHHH--hccCCCCCCceEEeCCch---h--------------HHHHHHHHHHHHHHHHhHHHHHH
Q 011501 144 MPGGSFEAYKHIEDILLKV--AAQVPDSGPCVTYVGKGG---S--------------GNFVKMIHNGIEYGDMQLIAEAY 204 (484)
Q Consensus 144 ~~gg~~~~~~~v~~ll~~i--~~~~~~~~~~~~~~G~~g---~--------------g~~~K~v~N~i~~~~~~~~~Ea~ 204 (484)
+.+++++.++.++++|+.. +.+ +++.++.- - ...+|+.+|.+.....+++.|+.
T Consensus 170 ~~~~~~~~~~~v~~ll~~~g~g~~-------~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~ 242 (366)
T 1evy_A 170 IASADINVARRLQRIMSTGDRSFV-------CWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIR 242 (366)
T ss_dssp EECSSHHHHHHHHHHHSCTTSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred EecCCHHHHHHHHHHhcCCCCeEE-------EEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHH
Confidence 4567888999999999988 543 34555421 1 22234557888888899999999
Q ss_pred HHHHHhCCCCHHHHHHHH---HhhccCcchhhhhhhh--ccccccccCCCCchhHHHh----------hhhcCCCCchHH
Q 011501 205 DVLKSVGKLSNEELQQVF---SEWNKGELLSFLIEIT--ADIFGIKDDKGDGYLVDKV----------LDKTGMKGTGKW 269 (484)
Q Consensus 205 ~l~~~~g~~~~~~i~~~~---~~~~~g~~~s~l~~~~--~~~l~~~~~~~~~~~l~~i----------~~~~~~k~tg~~ 269 (484)
.++++.| ++++.+.++. ..|.. ..+...+.+ ...+.. ++.++.+ .+++ | .
T Consensus 243 ~la~a~G-i~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~e~~~~~-----~-~ 307 (366)
T 1evy_A 243 DLTAALG-GDGSAVFGLAGLGDLQLT--CSSELSRNFTVGKKLGK------GLPIEEIQRTSKAVAEGVATA-----D-P 307 (366)
T ss_dssp HHHHHTT-CCCTTTTSTTTHHHHHHH--HTCTTSHHHHHHHHHHT------TCCHHHHHC---CCCHHHHHH-----H-H
T ss_pred HHHHHhC-CCCccccccccchhheee--ecCCCCchHHHHHHHhC------CCCHHHHHHHcCCeeehHHHH-----H-H
Confidence 9999999 9976553320 00000 001111111 011111 1112222 2333 2 6
Q ss_pred HHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCC
Q 011501 270 TVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSS 310 (484)
Q Consensus 270 ~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~ 310 (484)
+++.|+++|+|+|+... +++.+ ...++.+..+..++..|
T Consensus 308 v~~~a~~~gv~~P~~~~-v~~~~-~~~~~~~~~~~~l~~~~ 346 (366)
T 1evy_A 308 LMRLAKQLKVKMPLCHQ-IYEIV-YKKKNPRDALADLLSCG 346 (366)
T ss_dssp HHHHHHHHTCCCHHHHH-HHHHH-HSCCCHHHHHHHHGGGC
T ss_pred HHHHHHHhCCCCcHHHH-HHHHH-HCCCCHHHHHHHHHcCC
Confidence 78999999999998764 45544 44566677777666543
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1e-20 Score=185.99 Aligned_cols=186 Identities=12% Similarity=0.188 Sum_probs=139.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||.+||.+|+ +|++|++||+++++++++.+......--+++.++++++ ++. +|+||.|+|++.++
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~---aDlVieavpe~~~v 87 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKD---CDIVMEAVFEDLNT 87 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGG---CSEEEECCCSCHHH
T ss_pred CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcC---CCEEEEcCcCCHHH
Confidence 68999999999999999999 99999999999999988876510000002567788877 565 99999999999888
Q ss_pred HHHH-HHHhhhcCCCCEEE-ecCCCChHHHHHHHH-HHHHcCCeEEeccCCCCHHhhhcCC--ccccC--CCHHHHHHHH
Q 011501 84 DQTI-KTLSVYMEKGDCII-DGGNEWYENTERRQK-AVAELGLLYLGMGVSGGEEGARYGP--SLMPG--GSFEAYKHIE 156 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiI-d~st~~~~~~~~~~~-~l~~~g~~~i~~pv~gg~~~a~~g~--~i~~g--g~~~~~~~v~ 156 (484)
+.++ .++.+. ++.+++ |+||.++....+..+ ..+..|.||++ |+.+ ++ .++.| ++++++++++
T Consensus 88 k~~l~~~l~~~--~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~-------~~lveiv~g~~t~~~~~~~~~ 157 (293)
T 1zej_A 88 KVEVLREVERL--TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHV-------MPLVEIVISRFTDSKTVAFVE 157 (293)
T ss_dssp HHHHHHHHHTT--CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTT-------CCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-cccc-------CCEEEEECCCCCCHHHHHHHH
Confidence 8766 555554 888885 677877654333211 11234788888 5543 34 45666 4999999999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 157 DILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
++++.+|++ ++++|+. |+++|.+. ..++|++.++++ | ++++++.+++.
T Consensus 158 ~l~~~lGk~-------~v~v~d~------fi~Nrll~----~~~~EA~~l~~~-G-v~~e~id~~~~ 205 (293)
T 1zej_A 158 GFLRELGKE-------VVVCKGQ------SLVNRFNA----AVLSEASRMIEE-G-VRAEDVDRVWK 205 (293)
T ss_dssp HHHHHTTCE-------EEEEESS------CHHHHHHH----HHHHHHHHHHHH-T-CCHHHHHHHHH
T ss_pred HHHHHcCCe-------EEEeccc------ccHHHHHH----HHHHHHHHHHHh-C-CCHHHHHHHHH
Confidence 999999976 4888864 66666543 568999999998 7 89999999873
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=196.34 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=172.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc---C-CCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE---G-NLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~---~-~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.|||+|||+|.||..||.+|+++|++|++|||++++++.+.+.+... + .+++..++++++ ++. +|+||+|||
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~---aDvVil~vk 89 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKK---EDILVIAIP 89 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCT---TEEEEECSC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcC---CCEEEEECC
Confidence 47999999999999999999999999999999999998887764210 0 001456678877 665 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHc-C--CeEEeccCCCCHHhhhcCC--ccccCCCHHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAEL-G--LLYLGMGVSGGEEGARYGP--SLMPGGSFEAY 152 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~-g--~~~i~~pv~gg~~~a~~g~--~i~~gg~~~~~ 152 (484)
+ .++++++.++.+ ++++||+++++ .+.+.+.+.+.+.+. + ..+..+|....+ ...|. .+..|++. +
T Consensus 90 ~-~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~--~~~g~~~~~~~g~~~--~ 161 (335)
T 1z82_A 90 V-QYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEE--VAKKLPTAVTLAGEN--S 161 (335)
T ss_dssp G-GGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHH--HHTTCCEEEEEEETT--H
T ss_pred H-HHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHH--HhCCCceEEEEEehh--H
Confidence 7 589998877665 78999999965 443334455555443 2 223334432211 12343 33444433 7
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCc-----------------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKG-----------------GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~-----------------g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
+.++++|+..+.+ +++.++. |.+..+|+.+|.+......++.|+..++++.| +++
T Consensus 162 ~~~~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G-~~~ 233 (335)
T 1z82_A 162 KELQKRISTEYFR-------VYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFG-ADQ 233 (335)
T ss_dssp HHHHHHHCCSSEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCH
T ss_pred HHHHHHhCCCCEE-------EEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhC-CCh
Confidence 8888999876654 2444332 23344566688888888999999999999999 999
Q ss_pred HHHHHHHHhhccCcch------hhhhhhh--ccccccccCCCCchhHHHhhhhcCCC-----CchHHHHHHHHHcCCCcc
Q 011501 216 EELQQVFSEWNKGELL------SFLIEIT--ADIFGIKDDKGDGYLVDKVLDKTGMK-----GTGKWTVQQAADLSVAAP 282 (484)
Q Consensus 216 ~~i~~~~~~~~~g~~~------s~l~~~~--~~~l~~~~~~~~~~~l~~i~~~~~~k-----~tg~~~~~~A~~~gvp~p 282 (484)
+.+.++. +..+ ++..+.+ ...+..+ +..+.+.+..+++ ..| .+++.|+++|+|+|
T Consensus 234 ~~~~~l~-----~~~~~~~t~~s~~~~n~~~~~~~~~g------~~~~~~~~~~g~~~e~~~~~~-~v~~~a~~~gv~~P 301 (335)
T 1z82_A 234 KTFMGLA-----GIGDLMVTCNSRYSRNRRFGELIARG------FNPLKLLESSNQVVEGAFTVK-AVMKIAKENKIDMP 301 (335)
T ss_dssp HHHTSTT-----THHHHHHHHHCTTCHHHHHHHHHHHT------CCHHHHHHTCSSCCTHHHHHH-HHHHHHHHTTCCCH
T ss_pred hhhcccc-----cccceeeeccCccCcHHHHHHHHhCC------CCHHHHHHhcCCeeeHHHHHH-HHHHHHHHhCCCCc
Confidence 8765421 1111 1111111 0111111 1223232222221 122 67789999999999
Q ss_pred hHHHHHHHHHHhcCchHHHHHHHhccC
Q 011501 283 TIESSLDARFLSGLKEERVEAAKVFRS 309 (484)
Q Consensus 283 ~~~~av~~r~~s~~~~~r~~~~~~~~~ 309 (484)
+... +++. +..-++.+..+..++..
T Consensus 302 ~~~~-v~~~-~~~~~~~~~~~~~l~~~ 326 (335)
T 1z82_A 302 ISEE-VYRV-VYEGKPPLQSMRDLMRR 326 (335)
T ss_dssp HHHH-HHHH-HHSCCCHHHHHHHHHC-
T ss_pred HHHH-HHHH-HhCCCCHHHHHHHHHcC
Confidence 8764 4444 44556666776666543
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=181.55 Aligned_cols=200 Identities=11% Similarity=0.107 Sum_probs=159.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
||+|+|||+ |.||..+|.+|+++|++|++|||++++.+.+.+.+ +.. .++.++++. +|+||+|||+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~-~~~~~~~~~---aDvVi~av~~~- 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMG-------IPL-TDGDGWIDE---ADVVVLALPDN- 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTT-------CCC-CCSSGGGGT---CSEEEECSCHH-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcC-------CCc-CCHHHHhcC---CCEEEEcCCch-
Confidence 469999999 99999999999999999999999999888876532 333 366666666 99999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE-eccCCCCH------HhhhcC-------C-c--cc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL-GMGVSGGE------EGARYG-------P-S--LM 144 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i-~~pv~gg~------~~a~~g-------~-~--i~ 144 (484)
.+.++++++.+.+.++.+|||+|+..+... +.+ + ..+..|+ .+|++|++ .....| . . +.
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~ 154 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCAL 154 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEE
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeec
Confidence 589999999999999999999888764322 222 2 2367888 78999887 556667 2 2 33
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 011501 145 PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV-GKLSNEELQQVFS 223 (484)
Q Consensus 145 ~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~-g~~~~~~i~~~~~ 223 (484)
.+++++.++.++++|+.+|... ..++++++.+.+.+.|.+.|+.....+..++|++..+... | ++++++.+++.
T Consensus 155 ~~~~~~~~~~v~~l~~~~G~~~----~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~G-l~~~~~~~~~~ 229 (286)
T 3c24_A 155 MQGPEEHYAIGADICETMWSPV----TRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYG-IDRQAALDFMI 229 (286)
T ss_dssp EESCTHHHHHHHHHHHHHTCSE----EEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhcCCc----ceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 5689999999999999999610 0258898877777779999999889999999988776655 7 99999988874
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-20 Score=190.79 Aligned_cols=284 Identities=9% Similarity=0.060 Sum_probs=179.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHHhhhcC---C----CCeeecCCHhHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKQEG---N----LPLYGFHDPESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~~---~----~~~~~~~s~~e~ 63 (484)
||||+|||+|.||.+||.+|+++| ++|++|||+++ +.+.+.+.+.... + .++..+++++++
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea 100 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV 100 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence 468999999999999999999999 99999999998 8877765431100 0 035667788887
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhh----hcCCCCEEEecCCCChH---HHHHHHHHHHHc-C--CeEEeccCCCC
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSV----YMEKGDCIIDGGNEWYE---NTERRQKAVAEL-G--LLYLGMGVSGG 133 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~----~l~~g~iiId~st~~~~---~~~~~~~~l~~~-g--~~~i~~pv~gg 133 (484)
++. +|+||+|||+ ..++++++++.+ .+.++++||+++++... ..+.+.+.+.+. + ..++.+|....
T Consensus 101 ~~~---aDvVilav~~-~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~ 176 (375)
T 1yj8_A 101 IND---ADLLIFIVPC-QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAM 176 (375)
T ss_dssp HTT---CSEEEECCCH-HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHH
T ss_pred HcC---CCEEEEcCCH-HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHH
Confidence 776 9999999997 489999999998 89899999999876432 122333333332 2 22333343221
Q ss_pred HHhhhcCC---ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCch-----------------hHHHHHHHHHHHH
Q 011501 134 EEGARYGP---SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGG-----------------SGNFVKMIHNGIE 193 (484)
Q Consensus 134 ~~~a~~g~---~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g-----------------~g~~~K~v~N~i~ 193 (484)
+ ...|. .++.+++++..+.++++|+..+.+ +++.++.- ....+|+.+|...
T Consensus 177 ~--v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~ 247 (375)
T 1yj8_A 177 D--VAMENFSEATIGGNDKDSLVIWQRVFDLPYFK-------INCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKS 247 (375)
T ss_dssp H--HHTTCCEEEEEECSCHHHHHHHHHHHCBTTEE-------EEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred H--HHhCCCeEEEEecCCHHHHHHHHHHhCCCCeE-------EEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHH
Confidence 1 12232 345567888999999999877754 35555532 2222355578888
Q ss_pred HHHHhHHHHHHHHHHHhC-CCCHHHHHH------HHHhhccCcchhhhhhhhcccccc-ccCCCCchhHHHhhhhc--CC
Q 011501 194 YGDMQLIAEAYDVLKSVG-KLSNEELQQ------VFSEWNKGELLSFLIEITADIFGI-KDDKGDGYLVDKVLDKT--GM 263 (484)
Q Consensus 194 ~~~~~~~~Ea~~l~~~~g-~~~~~~i~~------~~~~~~~g~~~s~l~~~~~~~l~~-~~~~~~~~~l~~i~~~~--~~ 263 (484)
....+++.|+..++++.| |++++++.+ ++..-. + ..++.+ ...+.. ++.+ .++.+.+++ ++
T Consensus 248 a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~-~-~~~~~~---~~~~~~~g~~~----~~~d~~~~~~~g~ 318 (375)
T 1yj8_A 248 AIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFL-A-GRNAKC---SAEFIKSTPKK----TWEELENEILKGQ 318 (375)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHS-S-SSHHHH---HHHHHHHTTSS----CHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeee-C-CccHHH---HHHHHhcCCCC----CHHHHHHhhcCCc
Confidence 889999999999999995 598876533 221100 0 011111 111111 0001 122222211 22
Q ss_pred CCchH----HHHHHHHHcCC--CcchHHHHHHHHHHhcCchHHHHHHHhccCC
Q 011501 264 KGTGK----WTVQQAADLSV--AAPTIESSLDARFLSGLKEERVEAAKVFRSS 310 (484)
Q Consensus 264 k~tg~----~~~~~A~~~gv--p~p~~~~av~~r~~s~~~~~r~~~~~~~~~~ 310 (484)
+-++. .+++.|+++|+ |+|+... ++ +.+...++.++.+..++..|
T Consensus 319 ~~E~~~~~~~v~~~a~~~gv~~~~P~~~~-v~-~~~~~~~~~~~~~~~l~~~~ 369 (375)
T 1yj8_A 319 KLQGTVTLKYVYHMIKEKNMTNEFPLFTV-LH-KISFENEDPSSLLKTFMNNK 369 (375)
T ss_dssp CCHHHHHHHHHHHHHHHTTCGGGCHHHHH-HH-HHHHSCCCTTHHHHHHSSCC
T ss_pred EeeHHHHHHHHHHHHHHhCCCCCCCHHHH-HH-HHHhCCCCHHHHHHHHHcCc
Confidence 22221 46788999999 9998764 44 44555666777777776544
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-19 Score=173.33 Aligned_cols=226 Identities=13% Similarity=0.097 Sum_probs=158.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|+|||+|.||..++.+|.+.|++|.+|||++++.+.+.+.. ++..+.+++++++. +|+||+|+|+ ..
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~D~Vi~~v~~-~~ 72 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKP-QL 72 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCG-GG
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc------CCEeeCCHHHHHhc---CCEEEEEeCc-Hh
Confidence 46999999999999999999999999999999999988877543 24567789888876 9999999995 46
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCC--CHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGG--SFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~v~~ll 159 (484)
+.+++.+ +.+|++||+.+++.... .+.+.+ ..+..++. ++.+.+.....|. .+++|+ +++.++.++++|
T Consensus 73 ~~~v~~~----l~~~~~vv~~~~~~~~~--~l~~~~-~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll 144 (259)
T 2ahr_A 73 FETVLKP----LHFKQPIISMAAGISLQ--RLATFV-GQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLT 144 (259)
T ss_dssp HHHHHTT----SCCCSCEEECCTTCCHH--HHHHHH-CTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHH----hccCCEEEEeCCCCCHH--HHHHhc-CCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 7776654 34788999986544332 233333 24556776 5666666666777 566776 899999999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHH--HHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhh-hhh
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIH--NGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSF-LIE 236 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~--N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~-l~~ 236 (484)
+.+| + ++++++.....++++.. |.+.+..+..++|+ +.+.| ++++++.+++. .+...++ ++.
T Consensus 145 ~~~G-~-------~~~~~~~~~d~~~al~g~~~~~~~~~~~~la~~---~~~~G-l~~~~~~~~~~---~~~~~~~~~~~ 209 (259)
T 2ahr_A 145 DSFG-S-------TFDISEKDFDTFTALAGSSPAYIYLFIEALAKA---GVKNG-IPKAKALEIVT---QTVLASASNLK 209 (259)
T ss_dssp HTTE-E-------EEECCGGGHHHHHHHHTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH---HHHHHHHHHHH
T ss_pred HhCC-C-------EEEecHHHccHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH---HHHHHHHHHHH
Confidence 9998 4 48888766666666642 44555556666666 56788 99999988874 3333444 332
Q ss_pred hhc--cccccccCCCCchhHHHhhhhc
Q 011501 237 ITA--DIFGIKDDKGDGYLVDKVLDKT 261 (484)
Q Consensus 237 ~~~--~~l~~~~~~~~~~~l~~i~~~~ 261 (484)
... +...+++.++|++.+...++++
T Consensus 210 ~~~~~p~~l~~~~~~p~~~~~~~~~~l 236 (259)
T 2ahr_A 210 TSSQSPHDFIDAICSPGGTTIAGLMEL 236 (259)
T ss_dssp HSSSCHHHHHHHHCCTTSHHHHHHHHH
T ss_pred hcCCCHHHHHHhCCCCChhHHHHHHHH
Confidence 221 2222223346677777666654
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-20 Score=180.09 Aligned_cols=198 Identities=18% Similarity=0.163 Sum_probs=151.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.|+|+|||+|.||..++..|+++|++ |.+|||++++.+.+.+.. ++..+.+++++++. +|+||+|+|+.
T Consensus 10 ~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~---~Dvvi~av~~~- 79 (266)
T 3d1l_A 10 DTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKV------EAEYTTDLAEVNPY---AKLYIVSLKDS- 79 (266)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHT------TCEEESCGGGSCSC---CSEEEECCCHH-
T ss_pred CCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHc------CCceeCCHHHHhcC---CCEEEEecCHH-
Confidence 36899999999999999999999999 999999999988877642 25667788887765 99999999997
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccc-cCCCHHHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLM-PGGSFEAYKHIEDILL 160 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~-~gg~~~~~~~v~~ll~ 160 (484)
.+.++++++.+.++++++||+++++.+.+. +.+.+...+..+..+|++|++.....+..++ .+++++.++.++++|+
T Consensus 80 ~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~l~~ 157 (266)
T 3d1l_A 80 AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIAS 157 (266)
T ss_dssp HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCCTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhcCCCeEEEecCCHHHHHHHHHHHH
Confidence 678899999888889999999999887544 3333333355667778877544322333444 4889999999999999
Q ss_pred HHhccCCCCCCceEEeCCch---hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHh
Q 011501 161 KVAAQVPDSGPCVTYVGKGG---SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSE 224 (484)
Q Consensus 161 ~i~~~~~~~~~~~~~~G~~g---~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~ 224 (484)
.+|.+ ++++++.+ -...+|+++|.. ..+..++|+ ++++.| ++++++.+++..
T Consensus 158 ~~g~~-------~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l~~~~G-l~~~~~~~l~~~ 212 (266)
T 3d1l_A 158 TLSNR-------VYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--LLKKYN-LPFDVMLPLIDE 212 (266)
T ss_dssp TTCSC-------EEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHTT-CCGGGGHHHHHH
T ss_pred hcCCc-------EEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--HHHHcC-CCHHHHHHHHHH
Confidence 99865 48888654 456789999984 345566676 567888 999988888743
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-19 Score=179.38 Aligned_cols=201 Identities=11% Similarity=0.062 Sum_probs=143.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeC--ChhHHHHHHHHhhhc--C-C-CCeeecC--CHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR--TTSKVDETVERAKQE--G-N-LPLYGFH--DPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr--~~~~~~~~~~~~~~~--~-~-~~~~~~~--s~~e~~~~l~~advIi~ 75 (484)
|||+|||+|.||..+|..|+++|++|++||| ++++.+.+.+.+... + . .++...+ ++++.++. +|+||+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~D~vi~ 77 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLEN---AEVVLL 77 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTT---CSEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhc---CCEEEE
Confidence 4899999999999999999999999999999 998888876543100 0 0 0124455 66676665 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC----hHHHHHHHHHHHHc-CC----eEEeccCCCCHHhhhcCC--ccc
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW----YENTERRQKAVAEL-GL----LYLGMGVSGGEEGARYGP--SLM 144 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~----~~~~~~~~~~l~~~-g~----~~i~~pv~gg~~~a~~g~--~i~ 144 (484)
|||+. .++++++.+.+ +.++++||+++++. |...+.+.+.+.+. |. .+...|.. ......|. .++
T Consensus 78 ~v~~~-~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~--~~~~~~g~~~~~~ 153 (335)
T 1txg_A 78 GVSTD-GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI--AREVAKRMPTTVV 153 (335)
T ss_dssp CSCGG-GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC--HHHHHTTCCEEEE
T ss_pred cCChH-HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc--HHHHHccCCcEEE
Confidence 99997 88999999999 98999999998664 33444555555542 33 12222321 11111233 344
Q ss_pred c-CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCc-----------------hhHHHHHHH-----HHHHHHHHHhHHH
Q 011501 145 P-GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG-----------------GSGNFVKMI-----HNGIEYGDMQLIA 201 (484)
Q Consensus 145 ~-gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~-----------------g~g~~~K~v-----~N~i~~~~~~~~~ 201 (484)
+ +++++.++.++++|+..+.+ +++.++. |....+|+. +|.......+++.
T Consensus 154 ~~~~~~~~~~~~~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~ 226 (335)
T 1txg_A 154 FSSPSESSANKMKEIFETEYFG-------VEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAIN 226 (335)
T ss_dssp EECSCHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHhCCCcEE-------EEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4 45788899999999887754 3556654 333445777 8888888899999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 011501 202 EAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 202 Ea~~l~~~~g~~~~~~i~ 219 (484)
|+..++++.| ++++++.
T Consensus 227 E~~~la~~~G-~~~~~~~ 243 (335)
T 1txg_A 227 EMAELIEILG-GDRETAF 243 (335)
T ss_dssp HHHHHHHHHT-SCGGGGG
T ss_pred HHHHHHHHHC-CCcchhh
Confidence 9999999999 9987653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-20 Score=182.07 Aligned_cols=251 Identities=16% Similarity=0.173 Sum_probs=165.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-----C-CcEEEEeCChhHHHHHHH-HhhhcCC-------CCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-----G-FPISVYNRTTSKVDETVE-RAKQEGN-------LPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-----G-~~V~v~dr~~~~~~~~~~-~~~~~~~-------~~~~~~~s~~e~~~~l~ 68 (484)
+|||+|||+|.||..+|.+|+++ | ++|++|+| +++.+.+.+ .+..... .++...++. +.+..
T Consensus 8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~-- 83 (317)
T 2qyt_A 8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGT-- 83 (317)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCC--
T ss_pred CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCC--
Confidence 36899999999999999999999 9 99999999 788888776 3321000 001111333 33444
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccCCCCH--HhhhcCCc
Q 011501 69 KPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGVSGGE--EGARYGPS 142 (484)
Q Consensus 69 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv~gg~--~~a~~g~~ 142 (484)
+|+||+|||+. +++++++.+.+.+.++++||++++.. ...+.+.+.+.+ .|+.++++++++.. .....|..
T Consensus 84 -~D~vil~vk~~-~~~~v~~~i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~ 160 (317)
T 2qyt_A 84 -VDYILFCTKDY-DMERGVAEIRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADREL 160 (317)
T ss_dssp -EEEEEECCSSS-CHHHHHHHHGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred -CCEEEEecCcc-cHHHHHHHHHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCce
Confidence 99999999997 68999999999998899999998874 333444444433 35566777776421 22233442
Q ss_pred c-c----cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHH-------------------HHHh
Q 011501 143 L-M----PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEY-------------------GDMQ 198 (484)
Q Consensus 143 i-~----~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~-------------------~~~~ 198 (484)
+ + .+++.+.+ .++++|+..+.+ +.+.++.+.+.+.|++.|.+.. ....
T Consensus 161 ~~ig~~~~~~~~~~~-~~~~ll~~~g~~-------~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~ 232 (317)
T 2qyt_A 161 FYFGSGLPEQTDDEV-RLAELLTAAGIR-------AYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLS 232 (317)
T ss_dssp EEEECCSSSCCHHHH-HHHHHHHHTTCC-------EECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHH
T ss_pred EEEcCCCCCCcCHHH-HHHHHHHHCCCC-------CEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 3 33457777 899999988854 4777889999999999998754 3458
Q ss_pred HHHHHHHHHHHhCCCCHH--HHHHHHHhhccCcchhhhhhhhccccccccCCCCchh--HHHhhhhcCCCCchHHHHHHH
Q 011501 199 LIAEAYDVLKSVGKLSNE--ELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYL--VDKVLDKTGMKGTGKWTVQQA 274 (484)
Q Consensus 199 ~~~Ea~~l~~~~g~~~~~--~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~--l~~i~~~~~~k~tg~~~~~~A 274 (484)
++.|+..++++.| ++++ .+.+.+..... ........++. ++..++. ++.+ .| ++++.|
T Consensus 233 ~~~E~~~v~~a~G-~~~~~~~~~~~~~~~~~-----~~~~~~~sm~~---d~~~g~~~E~~~~--------~g-~~~~~a 294 (317)
T 2qyt_A 233 LLEEVAELFRAKY-GQVPDDVVQQLLDKQRK-----MPPESTSSMHS---DFLQGGSTEVETL--------TG-YVVREA 294 (317)
T ss_dssp HHHHHHHHHHHHT-SCCCSSHHHHHHHHHHH-----C-----------------------CTT--------TH-HHHHHH
T ss_pred HHHHHHHHHHHcC-CCCChHHHHHHHHHHhc-----cCCCCCChHHH---HHHcCCccCHHHH--------hh-HHHHHH
Confidence 9999999999999 8863 56665543211 01111111111 1222222 2222 23 788999
Q ss_pred HHcCCCcchHHH
Q 011501 275 ADLSVAAPTIES 286 (484)
Q Consensus 275 ~~~gvp~p~~~~ 286 (484)
+++|+|+|+...
T Consensus 295 ~~~gv~~P~~~~ 306 (317)
T 2qyt_A 295 EALRVDLPMYKR 306 (317)
T ss_dssp HHTTCCCHHHHH
T ss_pred HHcCCCCCHHHH
Confidence 999999998764
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5.5e-21 Score=187.82 Aligned_cols=256 Identities=19% Similarity=0.221 Sum_probs=167.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC-CCee-ecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN-LPLY-GFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~-~~~~-~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|||+|||+|.||..+|.+|+++|++|++|||++++.+.+...+.. +. .... ..++. +.++. +|+||+|||+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~-~~~~~~~~~~~~~-~~~~~---~d~vi~~v~~~- 74 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETD-GSIFNESLTANDP-DFLAT---SDLLLVTLKAW- 74 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTT-SCEEEEEEEESCH-HHHHT---CSEEEECSCGG-
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCC-CceeeeeeeecCc-cccCC---CCEEEEEecHH-
Confidence 489999999999999999999999999999998765443221100 00 0011 12343 45555 99999999997
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEeccCCCC-HHhhhcCC-cccc-CCCHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLGMGVSGG-EEGARYGP-SLMP-GGSFEAYKHIE 156 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~~pv~gg-~~~a~~g~-~i~~-gg~~~~~~~v~ 156 (484)
.++++++++.+.+.++++||+++++. ...+.+.+.+.+ .|..+.++...+. ...+..|. .+.. +++++.++.++
T Consensus 75 ~~~~v~~~l~~~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~ 153 (291)
T 1ks9_A 75 QVSDAVKSLASTLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLA 153 (291)
T ss_dssp GHHHHHHHHHTTSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHH
T ss_pred hHHHHHHHHHhhCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHH
Confidence 68999999999999999999987764 233333333322 1222222222222 22344555 4443 55667788999
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH------------------HHHHhHHHHHHHHHHHhCCCCH--H
Q 011501 157 DILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE------------------YGDMQLIAEAYDVLKSVGKLSN--E 216 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~------------------~~~~~~~~Ea~~l~~~~g~~~~--~ 216 (484)
++|+.++.+ +++.++.+.+.+.|++.|... ....+++.|+..++++.| +++ +
T Consensus 154 ~ll~~~g~~-------~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G-~~~~~~ 225 (291)
T 1ks9_A 154 DILQTVLPD-------VAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREG-HHTSAE 225 (291)
T ss_dssp HHHHTTSSC-------EEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHT-CCCCHH
T ss_pred HHHHhcCCC-------CeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcC-CCCCHH
Confidence 999998854 478888899999999999887 677899999999999999 885 5
Q ss_pred HHHHHHHhhcc--CcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHH
Q 011501 217 ELQQVFSEWNK--GELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARF 292 (484)
Q Consensus 217 ~i~~~~~~~~~--g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~ 292 (484)
.+.+.+..+.. +...|.+. .++... +. . .++.+ .| ++++.|+++|+|+|+... +++.+
T Consensus 226 ~~~~~~~~~~~~~~~~~ssm~---~d~~~g-~~-~---e~~~~--------~g-~~~~~a~~~gv~~P~~~~-~~~~~ 285 (291)
T 1ks9_A 226 DLRDYVMQVIDATAENISSML---QDIRAL-RH-T---EIDYI--------NG-FLLRRARAHGIAVPENTR-LFEMV 285 (291)
T ss_dssp HHHHHHHHHHHHTTTCCCHHH---HHHHTT-CC-C---SGGGT--------HH-HHHHHHHHHTCCCHHHHH-HHHHH
T ss_pred HHHHHHHHHHhcCCCCCChHH---HHHHcC-Cc-c---HHHHH--------HH-HHHHHHHHhCCCCCHHHH-HHHHH
Confidence 55333322111 11122222 222221 11 1 12221 33 688999999999998764 34443
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=180.05 Aligned_cols=204 Identities=9% Similarity=0.015 Sum_probs=142.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh-----HHHHHHHHhhhc----C---CCCeeecCCHh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS-----KVDETVERAKQE----G---NLPLYGFHDPE 61 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~-----~~~~~~~~~~~~----~---~~~~~~~~s~~ 61 (484)
|++|||+|||+|.||..+|..|+++| ++|++|||+++ +.+.+.+.+... + ..++..+++++
T Consensus 6 m~~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (354)
T 1x0v_A 6 MASKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVV 85 (354)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHH
Confidence 55579999999999999999999999 99999999998 777776532110 0 00255667888
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh---HHHHHHHHHHHHc-C--CeEEeccCCCCHH
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY---ENTERRQKAVAEL-G--LLYLGMGVSGGEE 135 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~---~~~~~~~~~l~~~-g--~~~i~~pv~gg~~ 135 (484)
++++. +|+||+|||+. .++++++++.+.+.++++||+++++.. ...+.+.+.+.+. + ...+.+|....
T Consensus 86 ~~~~~---aD~Vilav~~~-~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~-- 159 (354)
T 1x0v_A 86 QAAED---ADILIFVVPHQ-FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIAS-- 159 (354)
T ss_dssp HHHTT---CSEEEECCCGG-GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHH--
T ss_pred HHHcC---CCEEEEeCCHH-HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHH--
Confidence 87776 99999999985 899999999999989999999988542 2222232323221 3 22233332211
Q ss_pred hhhcC-C--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHH-----------------HHHHHHHHH
Q 011501 136 GARYG-P--SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVK-----------------MIHNGIEYG 195 (484)
Q Consensus 136 ~a~~g-~--~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K-----------------~v~N~i~~~ 195 (484)
....| + .++.+++++..+.++++|+..+.+ +++.++.-...+.| +.+|.....
T Consensus 160 ~v~~g~~~~~~~~~~~~~~~~~v~~ll~~~g~~-------~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~ 232 (354)
T 1x0v_A 160 EVADEKFCETTIGCKDPAQGQLLKELMQTPNFR-------ITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAV 232 (354)
T ss_dssp HHHTTCCEEEEEECSSHHHHHHHHHHHCBTTEE-------EEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhcCCceEEEEECCHHHHHHHHHHhCCCCEE-------EEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHH
Confidence 11234 2 334566888899999999887754 35555532233333 347777788
Q ss_pred HHhHHHHHHHHHHHhCCC---CHHHH
Q 011501 196 DMQLIAEAYDVLKSVGKL---SNEEL 218 (484)
Q Consensus 196 ~~~~~~Ea~~l~~~~g~~---~~~~i 218 (484)
...++.|+..++++.| + +++++
T Consensus 233 ~~~~~~E~~~la~a~G-~~~~~~~~~ 257 (354)
T 1x0v_A 233 IRLGLMEMIAFAKLFC-SGPVSSATF 257 (354)
T ss_dssp HHHHHHHHHHHHHHHS-SSCCCGGGG
T ss_pred HHHHHHHHHHHHHHhc-CCCCCcccc
Confidence 8999999999999998 8 87665
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=172.12 Aligned_cols=235 Identities=14% Similarity=0.115 Sum_probs=160.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+|+|||+|.||..+|.+|+++| ++|++|||++++.+.+.+.. ++..+.++++++ . +|+||+||| +.+
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~------g~~~~~~~~~~~-~---~D~vi~~v~-~~~ 69 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPELH-S---DDVLILAVK-PQD 69 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCCC-T---TSEEEECSC-HHH
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhc------CCEEeCCHHHHh-c---CCEEEEEeC-chh
Confidence 48999999999999999999999 99999999999988877642 255667777766 5 999999999 568
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCC--CHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGG--SFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg--~~~~~~~v~~ll 159 (484)
+++++.++.+ + +++||+++++... ..+.+.+. .+.+++.+ +.+.+.....|. .+++++ +++.++.++++|
T Consensus 70 ~~~v~~~l~~--~-~~ivv~~~~g~~~--~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~ 142 (263)
T 1yqg_A 70 MEAACKNIRT--N-GALVLSVAAGLSV--GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIM 142 (263)
T ss_dssp HHHHHTTCCC--T-TCEEEECCTTCCH--HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcc--C-CCEEEEecCCCCH--HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHH
Confidence 8888877665 4 8999999554433 33444443 35678877 666666666666 677777 899999999999
Q ss_pred HHHhccCCCCCCceEEeC-C---------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCc
Q 011501 160 LKVAAQVPDSGPCVTYVG-K---------GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGE 229 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G-~---------~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~ 229 (484)
+.++.. ++++ + .|.+ +.+.+..+..+.|+ +.+.| ++++++.+++... .
T Consensus 143 ~~~g~~--------~~~~~~~~~~~~~al~g~~-------~~~~~~~~~~l~e~---~~~~G-~~~~~~~~~~~~~---~ 200 (263)
T 1yqg_A 143 KSVGLT--------VWLDDEEKMHGITGISGSG-------PAYVFYLLDALQNA---AIRQG-FDMAEARALSLAT---F 200 (263)
T ss_dssp HTTEEE--------EECSSTTHHHHHHHHTTSH-------HHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHHHH---H
T ss_pred HhCCCE--------EEeCChhhccHHHHHHccH-------HHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHHHH---H
Confidence 999853 4777 4 2222 22233444555565 67788 9999888887432 2
Q ss_pred chhh-hhhhhc--c-ccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHH
Q 011501 230 LLSF-LIEITA--D-IFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFL 293 (484)
Q Consensus 230 ~~s~-l~~~~~--~-~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~ 293 (484)
..+. ++.... + .+.. ..++|++.+....++ .++.|++.|+.. ++.+-+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~-------------l~~~~~~~~~~~-a~~~~~~ 253 (263)
T 1yqg_A 201 KGAVALAEQTGEDFEKLQK-NVTSKGGTTHEAVEA-------------FRRHRVAEAISE-GVCACVR 253 (263)
T ss_dssp HHHHHHHHHHCCCHHHHHH-HTCCTTSHHHHHHHH-------------HHHTTHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHH-hcCCCChhHHHHHHH-------------HHHCCHHHHHHH-HHHHHHH
Confidence 2222 332221 2 2222 235566665555443 366889988764 4444443
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-18 Score=172.01 Aligned_cols=197 Identities=13% Similarity=0.131 Sum_probs=139.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChh--HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTS--KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~--~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
|++|+|+|||+|.||.+||.+|+++| ++|++|||+++ +.+.+.+.+ +..+.++.++++. +|+||
T Consensus 20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G-------~~~~~~~~e~~~~---aDvVi 89 (322)
T 2izz_A 20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMG-------VKLTPHNKETVQH---SDVLF 89 (322)
T ss_dssp --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHT-------CEEESCHHHHHHH---CSEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcC-------CEEeCChHHHhcc---CCEEE
Confidence 34579999999999999999999999 89999999986 777775432 5677788888887 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc--CCeEEeccCCCCHHhhhcCCccccCCC---H
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL--GLLYLGMGVSGGEEGARYGPSLMPGGS---F 149 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~--g~~~i~~pv~gg~~~a~~g~~i~~gg~---~ 149 (484)
+|||+ ..+++++.++.+.+.++++||+++++.+.. .+.+.+.+. +..++.+... .+.....|..++.+|+ +
T Consensus 90 lav~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~--~l~~~l~~~~~~~~vv~~~p~-~p~~~~~g~~v~~~g~~~~~ 165 (322)
T 2izz_A 90 LAVKP-HIIPFILDEIGADIEDRHIVVSCAAGVTIS--SIEKKLSAFRPAPRVIRCMTN-TPVVVREGATVYATGTHAQV 165 (322)
T ss_dssp ECSCG-GGHHHHHHHHGGGCCTTCEEEECCTTCCHH--HHHHHHHTTSSCCEEEEEECC-GGGGGTCEEEEEEECTTCCH
T ss_pred EEeCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCCHH--HHHHHHhhcCCCCeEEEEeCC-cHHHHcCCeEEEEeCCCCCH
Confidence 99995 589999999999998999999998776532 344555442 3455554322 2222233445666665 8
Q ss_pred HHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 150 EAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMI--HNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v--~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
+.++.++++|+.+|.. +++.+........+. .+.+.+..+..++|+ +.+.| ++++++.+++.
T Consensus 166 ~~~~~v~~ll~~~G~~--------~~~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~G-l~~~~a~~l~~ 229 (322)
T 2izz_A 166 EDGRLMEQLLSSVGFC--------TEVEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMG-LPRRLAVRLGA 229 (322)
T ss_dssp HHHHHHHHHHHTTEEE--------EECCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCE--------EEeCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 8999999999999864 445543333333332 233444444444444 46778 99999888874
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-18 Score=169.08 Aligned_cols=171 Identities=15% Similarity=0.194 Sum_probs=136.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhH-HHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES-FVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e-~~~~l~~advIi~~vp~ 79 (484)
+++|||||+|.||.++|..|.++|+ +|++|||++++.+.+.+.+.. ...+.++++ +++. +|+||+|||.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~-----~~~~~~~~~~~~~~---aDvVilavp~ 104 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDFS---PDFVMLSSPV 104 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCTTGGGGGC---CSEEEECSCG
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCc-----chhcCCHHHHhhcc---CCEEEEeCCH
Confidence 4789999999999999999999999 999999999988877654321 145678888 7776 9999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCC----HHhhh----cCC-cccc---C
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGG----EEGAR----YGP-SLMP---G 146 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg----~~~a~----~g~-~i~~---g 146 (484)
. .+.++++++.+.++++.+|+|++++.......+.+.+.. .|++ .|++|+ +..+. .|. .++. +
T Consensus 105 ~-~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~ 180 (314)
T 3ggo_A 105 R-TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKK 180 (314)
T ss_dssp G-GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTT
T ss_pred H-HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCC
Confidence 7 688899999999999999999999987666666665543 6887 588885 33333 465 4444 4
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH
Q 011501 147 GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI 192 (484)
Q Consensus 147 g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i 192 (484)
++++.++.++++|+.+|.+ ++++++..-...+.++...-
T Consensus 181 ~~~~~~~~v~~l~~~~G~~-------v~~~~~~~hD~~~a~~s~lp 219 (314)
T 3ggo_A 181 TDKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHLP 219 (314)
T ss_dssp SCHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHHH
T ss_pred CCHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHHH
Confidence 6899999999999999976 48888877777777776543
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-17 Score=156.85 Aligned_cols=192 Identities=14% Similarity=0.131 Sum_probs=135.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC----cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF----PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~----~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+|||+|||+|.||.+|+.+|+++|+ +|++|||++++.+.+.+.. ++..+.+++++++. +|+||+|||
T Consensus 2 ~~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~------g~~~~~~~~e~~~~---aDvVilav~ 72 (247)
T 3gt0_A 2 DKQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY------GLTTTTDNNEVAKN---ADILILSIK 72 (247)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH------CCEECSCHHHHHHH---CSEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh------CCEEeCChHHHHHh---CCEEEEEeC
Confidence 4689999999999999999999998 9999999999998887643 25678899999888 999999997
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe----ccCCCCHHhhhcCC-cccc--CCCHHH
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG----MGVSGGEEGARYGP-SLMP--GGSFEA 151 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~----~pv~gg~~~a~~g~-~i~~--gg~~~~ 151 (484)
+. .++++++++.+.++++++||..+++.... .+.+.+. .+..++. .|+.+ ..|. .++. +++++.
T Consensus 73 ~~-~~~~v~~~l~~~l~~~~~vvs~~~gi~~~--~l~~~~~-~~~~~v~~~p~~p~~~-----~~g~~~~~~~~~~~~~~ 143 (247)
T 3gt0_A 73 PD-LYASIINEIKEIIKNDAIIVTIAAGKSIE--STENAFN-KKVKVVRVMPNTPALV-----GEGMSALCPNEMVTEKD 143 (247)
T ss_dssp TT-THHHHC---CCSSCTTCEEEECSCCSCHH--HHHHHHC-SCCEEEEEECCGGGGG-----TCEEEEEEECTTCCHHH
T ss_pred HH-HHHHHHHHHHhhcCCCCEEEEecCCCCHH--HHHHHhC-CCCcEEEEeCChHHHH-----cCceEEEEeCCCCCHHH
Confidence 65 89999999999998999998655554322 3333332 3344443 23332 2344 3444 478999
Q ss_pred HHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCCHHHHHHHHH
Q 011501 152 YKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDV-LKSVGKLSNEELQQVFS 223 (484)
Q Consensus 152 ~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l-~~~~g~~~~~~i~~~~~ 223 (484)
++.++++|+.+|. ++++++.-.-.++-+. +-.-..+..+.|++.. +.+.| +++++..+++.
T Consensus 144 ~~~~~~l~~~~G~--------~~~~~e~~~d~~~a~~--g~gpa~~~~~~eal~~a~~~~G-l~~~~a~~~~~ 205 (247)
T 3gt0_A 144 LEDVLNIFNSFGQ--------TEIVSEKLMDVVTSVS--GSSPAYVYMIIEAMADAAVLDG-MPRNQAYKFAA 205 (247)
T ss_dssp HHHHHHHHGGGEE--------EEECCGGGHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--------EEEeCHHHccHHHHHh--ccHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 9999999999996 3666542211122222 1112344566677766 67888 99999999874
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-17 Score=162.14 Aligned_cols=198 Identities=15% Similarity=0.182 Sum_probs=140.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-------cC-C----------CCeeecCCHhHH
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-------EG-N----------LPLYGFHDPESF 63 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-------~~-~----------~~~~~~~s~~e~ 63 (484)
.+++|+|||+|.||.++|..|+++|++|++||+++++++.+.+.... .+ . .++..+.+++++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~ 82 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA 82 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence 45789999999999999999999999999999999988776654100 00 0 024567788887
Q ss_pred HhhcCCCcEEEEecCCCch-HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-
Q 011501 64 VHSIQKPRVIIMLVKAGSP-VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP- 141 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~- 141 (484)
++. +|+||++||...+ ...++.++.+.++++.++++.+++.+. .++.+.+.. +..+++...+. .+..++
T Consensus 83 ~~~---aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~--~~la~~~~~-~~~~ig~h~~~---p~~~~~l 153 (283)
T 4e12_A 83 VKD---ADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLP--SDLVGYTGR-GDKFLALHFAN---HVWVNNT 153 (283)
T ss_dssp TTT---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH--HHHHHHHSC-GGGEEEEEECS---STTTSCE
T ss_pred hcc---CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCH--HHHHhhcCC-CcceEEEccCC---CcccCce
Confidence 776 9999999998743 446668888899999999976666543 234444422 22333332111 122344
Q ss_pred ccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 142 SLMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 142 ~i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
..++.+ +++.++.++++++.++.. .++++..+.|. ++++.+ ...++|++.++++.+ .+++++
T Consensus 154 vevv~~~~t~~~~~~~~~~l~~~~g~~-------~v~v~~~~~g~---i~nr~~----~~~~~ea~~l~~~g~-~~~~~i 218 (283)
T 4e12_A 154 AEVMGTTKTDPEVYQQVVEFASAIGMV-------PIELKKEKAGY---VLNSLL----VPLLDAAAELLVDGI-ADPETI 218 (283)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTCE-------EEECSSCCTTT---THHHHH----HHHHHHHHHHHHTTS-CCHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCE-------EEEEecCCCCE---EehHHH----HHHHHHHHHHHHhCC-CCHHHH
Confidence 333333 789999999999999976 47886666665 333333 246799999999887 999999
Q ss_pred HHHHH
Q 011501 219 QQVFS 223 (484)
Q Consensus 219 ~~~~~ 223 (484)
.+++.
T Consensus 219 d~~~~ 223 (283)
T 4e12_A 219 DKTWR 223 (283)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=160.29 Aligned_cols=177 Identities=15% Similarity=0.201 Sum_probs=138.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh-hcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH-SIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~-~l~~advIi~~vp~~ 80 (484)
++|+|||+|.||..+|..|.++|+ +|++|||++++.+.+.+.+. ....+.+++++++ . +|+||+|||..
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~---aDvVilavp~~ 73 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----IDEGTTSIAKVEDFS---PDFVMLSSPVR 73 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGGGGTC---CSEEEECSCHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCC-----cccccCCHHHHhcCC---CCEEEEcCCHH
Confidence 689999999999999999999999 99999999998877664332 1123567777776 6 99999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCC----HHhhh----cCC-cccc---CC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGG----EEGAR----YGP-SLMP---GG 147 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg----~~~a~----~g~-~i~~---gg 147 (484)
.+.+++.++.+.++++.+|+++++........+.+.+.. + +++ .|++++ +..+. .|. .++. ++
T Consensus 74 -~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~-~--~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~ 149 (281)
T 2g5c_A 74 -TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK-R--FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKT 149 (281)
T ss_dssp -HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-G--EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSS
T ss_pred -HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccc-c--ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCC
Confidence 778899999998999999999999887666666666654 2 666 466654 33332 566 5555 67
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQL 199 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~ 199 (484)
+++.++.++++|+.++.+ ++++++...+..+|++.|+..+....+
T Consensus 150 ~~~~~~~v~~l~~~~g~~-------~~~~~~~~~d~~~~~~~~~~~~~a~~~ 194 (281)
T 2g5c_A 150 DKKRLKLVKRVWEDVGGV-------VEYMSPELHDYVFGVVSHLPHAVAFAL 194 (281)
T ss_dssp CHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999965 478887777889999998876544433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=174.20 Aligned_cols=189 Identities=14% Similarity=0.192 Sum_probs=139.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~~~ 65 (484)
++||||||+|.||.+||.+|+++|++|++||+++++++.+.+... ..+.. +++.++++++ ++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHA-LA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGGG-GG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHHH-hc
Confidence 468999999999999999999999999999999999887654210 00000 2456677754 45
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEE-ecCCCChHHHHHHHHHHH----HcCCeEEe-ccCCCCHHhhh
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCII-DGGNEWYENTERRQKAVA----ELGLLYLG-MGVSGGEEGAR 138 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiI-d~st~~~~~~~~~~~~l~----~~g~~~i~-~pv~gg~~~a~ 138 (484)
. +|+||+|||++..++ +++.++.+.++++.+|+ ++|+.++. ++.+.+. -.|.||++ +|++
T Consensus 84 ~---aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~------- 150 (483)
T 3mog_A 84 A---ADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM------- 150 (483)
T ss_dssp G---CSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC-------
T ss_pred C---CCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC-------
Confidence 5 999999999986664 67788999999999985 56666543 2232221 12566666 3433
Q ss_pred cCC-ccccCC---CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCC
Q 011501 139 YGP-SLMPGG---SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLS 214 (484)
Q Consensus 139 ~g~-~i~~gg---~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~ 214 (484)
+ ..+++| ++++++.+.++++.+|+. ++++++. .| ++++|.+.. .++|++.++++.+ .+
T Consensus 151 --~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d~-~G---fi~Nr~l~~----~~~Ea~~l~~~g~-~~ 212 (483)
T 3mog_A 151 --KLVEVVSGLATAAEVVEQLCELTLSWGKQ-------PVRCHST-PG---FIVNRVARP----YYSEAWRALEEQV-AA 212 (483)
T ss_dssp --CEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TT---TTHHHHTHH----HHHHHHHHHHTTC-SC
T ss_pred --CeEEEecCCCCCHHHHHHHHHHHHHhCCE-------EEEEecc-Cc---chHHHHHHH----HHHHHHHHHHhCC-CC
Confidence 4 445555 899999999999999976 4888763 23 666665443 6799999999988 99
Q ss_pred HHHHHHHHH
Q 011501 215 NEELQQVFS 223 (484)
Q Consensus 215 ~~~i~~~~~ 223 (484)
++++.+++.
T Consensus 213 ~~~id~a~~ 221 (483)
T 3mog_A 213 PEVIDAALR 221 (483)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999985
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.1e-18 Score=169.98 Aligned_cols=280 Identities=16% Similarity=0.136 Sum_probs=161.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc--C-CC----Ce-eecCCHhHHHhhcCCCcE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE--G-NL----PL-YGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~--~-~~----~~-~~~~s~~e~~~~l~~adv 72 (484)
|++|||+|||+|.||..+|..|+++|++|++|||++++.+.+.+.+... + .. .+ ..+.+++++++. +|+
T Consensus 2 m~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~ 78 (359)
T 1bg6_A 2 IESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADV 78 (359)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSE
T ss_pred CCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhc---CCE
Confidence 3457999999999999999999999999999999999988887653100 0 00 11 345678887766 999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC---CeEEe---ccCCCCHHhh---h----c
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG---LLYLG---MGVSGGEEGA---R----Y 139 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g---~~~i~---~pv~gg~~~a---~----~ 139 (484)
||+|+|.. ...++++++.+.+.++++||++.+..+ .+.++.+.+.+.+ +.|++ .|+.+...+. . .
T Consensus 79 vi~~v~~~-~~~~~~~~l~~~l~~~~~vv~~~~~~~-~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~ 156 (359)
T 1bg6_A 79 ILIVVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIK 156 (359)
T ss_dssp EEECSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEEC
T ss_pred EEEeCCch-HHHHHHHHHHHhCCCCCEEEEcCCCch-HHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEee
Confidence 99999997 568899999999999999999855333 3344555566654 55655 4554432211 0 0
Q ss_pred CC-cc--cc-CCCHHHHHHHHHHHHHHhccCCCCC-----C---ceEEeCCc--hhHHHHH---HH------HHHHHHHH
Q 011501 140 GP-SL--MP-GGSFEAYKHIEDILLKVAAQVPDSG-----P---CVTYVGKG--GSGNFVK---MI------HNGIEYGD 196 (484)
Q Consensus 140 g~-~i--~~-gg~~~~~~~v~~ll~~i~~~~~~~~-----~---~~~~~G~~--g~g~~~K---~v------~N~i~~~~ 196 (484)
+. .+ .. +++++.++.++++|..+... +.. . ++++.+.. +.+...| +. .+......
T Consensus 157 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~--~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (359)
T 1bg6_A 157 GAMDFACLPAAKAGWALEQIGSVLPQYVAV--ENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLA 234 (359)
T ss_dssp SCEEEEEESGGGHHHHHHHHTTTCTTEEEC--SCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHH
T ss_pred cceEEEeccccccHHHHHHHHHHhhhcEEc--CChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHH
Confidence 11 11 11 34555677777777544210 000 0 11111110 2333222 11 23345667
Q ss_pred HhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchh-hhhhhhccccccccCCCCchhHH--HhhhhcCCCCchHHHHHH
Q 011501 197 MQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLS-FLIEITADIFGIKDDKGDGYLVD--KVLDKTGMKGTGKWTVQQ 273 (484)
Q Consensus 197 ~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s-~l~~~~~~~l~~~~~~~~~~~l~--~i~~~~~~k~tg~~~~~~ 273 (484)
.+++.|+..++++.| ++++.+.+.+.........+ +....+..++. |...+ ..++ .+.+|+. -+.| ..++.
T Consensus 235 ~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~--d~~~~-~e~~~~~~~~D~~-~~~g-~~~~~ 308 (359)
T 1bg6_A 235 EKVDAERIAIAKAFD-LNVPSVCEWYKESYGQSPATIYEAVQGNPAYR--GIAGP-INLNTRYFFEDVS-TGLV-PLSEL 308 (359)
T ss_dssp HHHHHHHHHHHHTTT-CCCCCHHHHC-------CCSHHHHHHTCGGGT--TCBCC-SSSCCHHHHHHHH-TTHH-HHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCCcHHHHHHHHhCCCcccHHHHHhcchhhc--CCCCC-CCCCccceecCcC-ccHH-HHHHH
Confidence 889999999999998 98876666553211111110 00000112221 11111 1222 3344431 0112 68899
Q ss_pred HHHcCCCcchHHHHHHHHHHh
Q 011501 274 AADLSVAAPTIESSLDARFLS 294 (484)
Q Consensus 274 A~~~gvp~p~~~~av~~r~~s 294 (484)
|+++|+|+|+... +++.+..
T Consensus 309 a~~~gv~~P~~~~-l~~~~~~ 328 (359)
T 1bg6_A 309 GRAVNVPTPLIDA-VLDLISS 328 (359)
T ss_dssp HHHTTCCCHHHHH-HHHHHHH
T ss_pred HHHcCCCchHHHH-HHHHHHH
Confidence 9999999998775 4554443
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=159.16 Aligned_cols=186 Identities=16% Similarity=0.147 Sum_probs=133.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC----CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG----FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G----~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|++|+|+|||+|.||..||.+|+++| ++|++|||++++ . ++..+.+++++++. +|+||+|
T Consensus 2 m~~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~-------g~~~~~~~~~~~~~---~D~vi~~ 65 (262)
T 2rcy_A 2 MENIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------T-------TLNYMSSNEELARH---CDIIVCA 65 (262)
T ss_dssp CSSSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------S-------SSEECSCHHHHHHH---CSEEEEC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------C-------ceEEeCCHHHHHhc---CCEEEEE
Confidence 66789999999999999999999999 799999999876 1 25667788888887 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--cCCeEEe-ccCCCCHHhhhcCCccccCC---CHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--LGLLYLG-MGVSGGEEGARYGPSLMPGG---SFE 150 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~g~~~i~-~pv~gg~~~a~~g~~i~~gg---~~~ 150 (484)
||+. .+++++.++.+.++++.+|.++++..+. .+.+.+.. +.+.++. .|+.+ ..|..++.++ +++
T Consensus 66 v~~~-~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~~~v~~~p~~p~~~-----~~g~~~~~~~~~~~~~ 136 (262)
T 2rcy_A 66 VKPD-IAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSENKIVWVMPNTPCLV-----GEGSFIYCSNKNVNST 136 (262)
T ss_dssp SCTT-THHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTSEEEEEECCGGGGG-----TCEEEEEEECTTCCHH
T ss_pred eCHH-HHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCCcEEEECCChHHHH-----cCCeEEEEeCCCCCHH
Confidence 9965 8999999999888444455556666653 23333332 1133432 23332 2345444434 788
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH--HHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMI--HNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v--~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
.++.++++|+.+|. ++++++......+++. .|.+.+..+..+.|+ +.+.| ++++++.+++.
T Consensus 137 ~~~~~~~ll~~~G~--------~~~~~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~G-l~~~~~~~~~~ 199 (262)
T 2rcy_A 137 DKKYVNDIFNSCGI--------IHEIKEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNG-LSRELSKNLVL 199 (262)
T ss_dssp HHHHHHHHHHTSEE--------EEECCGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--------EEEeCHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 99999999999985 3888876555566653 355556666555555 46788 99988887764
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-17 Score=166.42 Aligned_cols=192 Identities=11% Similarity=0.113 Sum_probs=135.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHH--------HHHHhhhc------CCCCeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE--------TVERAKQE------GNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~--------~~~~~~~~------~~~~~~~~~s~~e~~~~l~ 68 (484)
+++|+|||+|.||.+||.+|+++|++|++||+++++... +.+.+.-. .-.+++.+++++ .++.
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~-- 130 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSN-- 130 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTT--
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHcc--
Confidence 478999999999999999999999999999999984321 22211000 000356677775 3444
Q ss_pred CCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccCCCCHHhhhcCC--
Q 011501 69 KPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGVSGGEEGARYGP-- 141 (484)
Q Consensus 69 ~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv~gg~~~a~~g~-- 141 (484)
+|+||+|||.+..++ .++.++.+.++++.+|++.+++.+.+ ++++.+.. .|.+|++ |+. ..+
T Consensus 131 -aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~--~ia~~~~~p~r~iG~Hffn-Pv~-------~m~Lv 199 (460)
T 3k6j_A 131 -CDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLN--EISSVLRDPSNLVGIHFFN-PAN-------VIRLV 199 (460)
T ss_dssp -CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHHTTSSSGGGEEEEECCS-STT-------TCCEE
T ss_pred -CCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH--HHHHhccCCcceEEEEecc-hhh-------hCCEE
Confidence 999999999886665 56688999999999997755554432 33333321 2555555 332 233
Q ss_pred ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 142 SLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 142 ~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
-++.|. ++++++.+.++++.+++. ++++++ +.|. +.|.+.. ..++|++.++++.| ++++++.
T Consensus 200 EIv~g~~Ts~e~~~~~~~l~~~lGk~-------~v~v~d-~pGf----i~Nril~---~~~~EA~~l~~~~G-a~~e~ID 263 (460)
T 3k6j_A 200 EIIYGSHTSSQAIATAFQACESIKKL-------PVLVGN-CKSF----VFNRLLH---VYFDQSQKLMYEYG-YLPHQID 263 (460)
T ss_dssp EEECCSSCCHHHHHHHHHHHHHTTCE-------EEEESS-CCHH----HHHHHHH---HHHHHHHHHHHTSC-CCHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCE-------EEEEec-ccHH----HHHHHHH---HHHHHHHHHHHHcC-CCHHHHH
Confidence 355553 899999999999999976 488886 5553 3444443 35799999998888 9999999
Q ss_pred HHHHh
Q 011501 220 QVFSE 224 (484)
Q Consensus 220 ~~~~~ 224 (484)
+++..
T Consensus 264 ~a~~~ 268 (460)
T 3k6j_A 264 KIITN 268 (460)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99854
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.2e-17 Score=159.29 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=124.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|.+|+|+|||+|.||..+|..|+++ |++|++|||++++.+.+.+.+. ....+.+++++++. +|+||+|||
T Consensus 4 M~~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~---aDvVilavp 75 (290)
T 3b1f_A 4 MEEKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----VDEATADFKVFAAL---ADVIILAVP 75 (290)
T ss_dssp GCCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----CSEEESCTTTTGGG---CSEEEECSC
T ss_pred cccceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----cccccCCHHHhhcC---CCEEEEcCC
Confidence 6678999999999999999999988 6899999999998887765331 11356678777776 999999999
Q ss_pred CCchHHHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCC----CHHhhh----cCC-ccc---
Q 011501 79 AGSPVDQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSG----GEEGAR----YGP-SLM--- 144 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~g----g~~~a~----~g~-~i~--- 144 (484)
+. .++++++++.+. ++++.+|+|++++.+..+..+.+.+..++++|++ .|++| ++..+. .|. .++
T Consensus 76 ~~-~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~ 154 (290)
T 3b1f_A 76 IK-KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPS 154 (290)
T ss_dssp HH-HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEEC
T ss_pred HH-HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecC
Confidence 87 668899999998 8899999999998876666666665544788888 57766 333232 454 322
Q ss_pred cCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCC
Q 011501 145 PGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178 (484)
Q Consensus 145 ~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~ 178 (484)
.+++++.++.++++|+.+|.+ ++++++
T Consensus 155 ~~~~~~~~~~v~~l~~~~G~~-------~~~~~~ 181 (290)
T 3b1f_A 155 CLTKPNTIPALQDLLSGLHAR-------YVEIDA 181 (290)
T ss_dssp TTCCTTHHHHHHHHTGGGCCE-------EEECCH
T ss_pred CCCCHHHHHHHHHHHHHcCCE-------EEEcCH
Confidence 357888999999999999965 366664
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.3e-16 Score=151.52 Aligned_cols=196 Identities=17% Similarity=0.177 Sum_probs=137.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|++++|||||+|.||.+|+..|+++|+ +|++|||++++.+.+.+.. ++..+.+..++++. +|+||+||
T Consensus 1 M~~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~------gi~~~~~~~~~~~~---aDvVilav 71 (280)
T 3tri_A 1 MNTSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKC------GVHTTQDNRQGALN---ADVVVLAV 71 (280)
T ss_dssp -CCSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTT------CCEEESCHHHHHSS---CSEEEECS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHc------CCEEeCChHHHHhc---CCeEEEEe
Confidence 777899999999999999999999999 9999999999998887642 36777888888877 99999999
Q ss_pred CCCchHHHHHHHHhhh-cCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCCc-cccC--CCHHHH
Q 011501 78 KAGSPVDQTIKTLSVY-MEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGPS-LMPG--GSFEAY 152 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~-l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~~-i~~g--g~~~~~ 152 (484)
|+ ..++++++++.+. ++++++||..+++.+. ..+.+.+. .+..++.+ |. .+.....|.. +..+ .+++.+
T Consensus 72 ~p-~~~~~vl~~l~~~~l~~~~iiiS~~agi~~--~~l~~~l~-~~~~vvr~mPn--~p~~v~~g~~~l~~~~~~~~~~~ 145 (280)
T 3tri_A 72 KP-HQIKMVCEELKDILSETKILVISLAVGVTT--PLIEKWLG-KASRIVRAMPN--TPSSVRAGATGLFANETVDKDQK 145 (280)
T ss_dssp CG-GGHHHHHHHHHHHHHTTTCEEEECCTTCCH--HHHHHHHT-CCSSEEEEECC--GGGGGTCEEEEEECCTTSCHHHH
T ss_pred CH-HHHHHHHHHHHhhccCCCeEEEEecCCCCH--HHHHHHcC-CCCeEEEEecC--ChHHhcCccEEEEeCCCCCHHHH
Confidence 87 4899999999998 8888899987766543 33444443 23444443 42 1222223333 3333 368999
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCch-hHHHHHH--HHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHH
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGG-SGNFVKM--IHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFS 223 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g-~g~~~K~--v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~ 223 (484)
+.++++|+.+|.. +++.++. -..++-+ .-..+.+..+..+.|+ +.+.| +++++..++..
T Consensus 146 ~~v~~l~~~iG~~--------~~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~G-l~~~~a~~l~~ 207 (280)
T 3tri_A 146 NLAESIMRAVGLV--------IWVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLG-LTKETAELLTE 207 (280)
T ss_dssp HHHHHHHGGGEEE--------EECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTT-CCHHHHHHHHH
T ss_pred HHHHHHHHHCCCe--------EEECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcC-CCHHHHHHHHH
Confidence 9999999999963 5664421 1111111 1133445555555555 35777 99999988874
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=149.92 Aligned_cols=178 Identities=13% Similarity=0.102 Sum_probs=135.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC-CCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN-LPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|||+||| +|.||..++..|+++|++|.++||++++.+.+.+.....-. ..+. ..+++++++. +|+||+++|+.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~D~Vi~~~~~~- 75 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEA---CDIAVLTIPWE- 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHH---CSEEEECSCHH-
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhc---CCEEEEeCChh-
Confidence 4899999 99999999999999999999999999988777654210000 0133 3577777777 99999999975
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh------------HHHHHHHHHHHHcCCeEEec--cCCCCHHhh--hcCC-ccc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY------------ENTERRQKAVAELGLLYLGM--GVSGGEEGA--RYGP-SLM 144 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~------------~~~~~~~~~l~~~g~~~i~~--pv~gg~~~a--~~g~-~i~ 144 (484)
.++++++++.+.+ ++++|+|+++... ...+++.+.+. +..++.+ |+.+..... ..+. .++
T Consensus 76 ~~~~~~~~l~~~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (212)
T 1jay_A 76 HAIDTARDLKNIL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVP 152 (212)
T ss_dssp HHHHHHHHTHHHH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEE
T ss_pred hHHHHHHHHHHHc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEE
Confidence 6788888888777 5899999998543 22556665554 4678887 665554443 4455 667
Q ss_pred cCCC-HHHHHHHHHHHHHH-hccCCCCCCceEEeCCchhHHHHHHHHHHHHHHH
Q 011501 145 PGGS-FEAYKHIEDILLKV-AAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGD 196 (484)
Q Consensus 145 ~gg~-~~~~~~v~~ll~~i-~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~ 196 (484)
++|+ ++.++.++++|+.+ |.+ ++++++.++++.+|++.|.+.+..
T Consensus 153 ~~g~~~~~~~~v~~l~~~~~G~~-------~~~~~~~~~a~~~k~~~~~~~~~~ 199 (212)
T 1jay_A 153 VCGDDDESKKVVMSLISEIDGLR-------PLDAGPLSNSRLVESLTPLILNIM 199 (212)
T ss_dssp EEESCHHHHHHHHHHHHHSTTEE-------EEEEESGGGHHHHHTHHHHHHHHH
T ss_pred EECCcHHHHHHHHHHHHHcCCCC-------ceeccchhHHHHhcchHHHHHHHH
Confidence 7775 89999999999999 865 489999999999999999776544
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-16 Score=154.56 Aligned_cols=192 Identities=14% Similarity=0.199 Sum_probs=134.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC---------------CCeeecCCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN---------------LPLYGFHDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~---------------~~~~~~~s~ 60 (484)
+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+... ..|. .+++.++++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 94 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCH
Confidence 468999999999999999999999999999999998776432110 0000 025567788
Q ss_pred hHHHhhcCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHH----HcCCeEEeccCCCCHH
Q 011501 61 ESFVHSIQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVA----ELGLLYLGMGVSGGEE 135 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~----~~g~~~i~~pv~gg~~ 135 (484)
++.++. +|+||+|||.+.++ +.++.++.+.++++.+|+..+++.+.. ++.+.+. -.|.+|++ |+
T Consensus 95 ~~~~~~---aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~--~l~~~~~~~~~~~g~h~~~-P~----- 163 (302)
T 1f0y_A 95 ASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQIT--SIANATTRQDRFAGLHFFN-PV----- 163 (302)
T ss_dssp HHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH--HHHTTSSCGGGEEEEEECS-ST-----
T ss_pred HHhhcC---CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHH--HHHHhcCCcccEEEEecCC-Cc-----
Confidence 877766 99999999987544 466788888888899888655554332 2333221 11344443 22
Q ss_pred hhhcCC--ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Q 011501 136 GARYGP--SLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVG 211 (484)
Q Consensus 136 ~a~~g~--~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g 211 (484)
..++ .++.| ++++.++.+.++++.+|.. ++++++. .| ++++|.+ ..+++|++.++++.+
T Consensus 164 --~~~~~~~i~~g~~~~~e~~~~~~~l~~~~G~~-------~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~ 226 (302)
T 1f0y_A 164 --PVMKLVEVIKTPMTSQKTFESLVDFSKALGKH-------PVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGD 226 (302)
T ss_dssp --TTCCEEEEECCTTCCHHHHHHHHHHHHHTTCE-------EEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTS
T ss_pred --ccCceEEEeCCCCCCHHHHHHHHHHHHHcCCc-------eEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCC
Confidence 1233 34444 3899999999999999965 4777752 33 4555543 356899999999987
Q ss_pred CCCHHHHHHHHH
Q 011501 212 KLSNEELQQVFS 223 (484)
Q Consensus 212 ~~~~~~i~~~~~ 223 (484)
++++++..++.
T Consensus 227 -~~~~~id~~~~ 237 (302)
T 1f0y_A 227 -ASKEDIDTAMK 237 (302)
T ss_dssp -SCHHHHHHHHH
T ss_pred -CCHHHHHHHHH
Confidence 99999988863
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.7e-17 Score=161.82 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=131.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh-cCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS-IQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~-l~~advIi~~vp~~~ 81 (484)
.++|||||+|.||.+||++|.++|++|++|||++++.+.+.+.+ +..+.+++++++. .+.+|+||+|||..
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G-------~~~~~~~~e~~~~a~~~aDlVilavP~~- 79 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEG-------FDVSADLEATLQRAAAEDALIVLAVPMT- 79 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTT-------CCEESCHHHHHHHHHHTTCEEEECSCHH-
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CeeeCCHHHHHHhcccCCCEEEEeCCHH-
Confidence 46899999999999999999999999999999999888766543 4557788887653 12379999999975
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCH-Hhhh-------cCC-ccccCC---C
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGE-EGAR-------YGP-SLMPGG---S 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~-~~a~-------~g~-~i~~gg---~ 148 (484)
.+.++++++.+. .++.+|+|+++++......+.+.+. +..|++ .|++|++ .++. .|. .++..+ +
T Consensus 80 ~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~ 156 (341)
T 3ktd_A 80 AIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFD 156 (341)
T ss_dssp HHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTS
T ss_pred HHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCC
Confidence 788999999886 7899999999998765555544432 578998 6999876 3332 233 444443 5
Q ss_pred HH--------HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH
Q 011501 149 FE--------AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG 191 (484)
Q Consensus 149 ~~--------~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~ 191 (484)
++ .++.++++|+.+|++ ++++++..--..+.++...
T Consensus 157 ~e~~~~~~~~~~~~v~~l~~~~Ga~-------v~~~~~~~HD~~~A~vshl 200 (341)
T 3ktd_A 157 GTDINSTWISIWKDVVQMALAVGAE-------VVPSRVGPHDAAAARVSHL 200 (341)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHTTCE-------EEECCHHHHHHHHHHHTHH
T ss_pred hhhhccchHHHHHHHHHHHHHcCCE-------EEEeCHHHHHHHHHHHhHH
Confidence 56 899999999999977 4888876666666666553
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.9e-16 Score=150.85 Aligned_cols=173 Identities=16% Similarity=0.179 Sum_probs=132.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|+|+|||+|.||..+|..|.++|++|++|||++++.+.+.+.+. ....+.+++++ .. +|+||+|||+. .+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~-~~---~D~vi~av~~~-~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL-----VDEAGQDLSLL-QT---AKIIFLCTPIQ-LI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS-----CSEEESCGGGG-TT---CSEEEECSCHH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCC-----CccccCCHHHh-CC---CCEEEEECCHH-HH
Confidence 48999999999999999999999999999999999888764331 11346677777 65 99999999976 78
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCH----Hhhh----cCC-cccc---CCCHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGE----EGAR----YGP-SLMP---GGSFE 150 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~----~~a~----~g~-~i~~---gg~~~ 150 (484)
.++++++.+.++++.+|+++++..+...+.+.+.+ ..+++. |++|++ ..+. .|. .++. +++++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~----~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~ 146 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW----SGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPE 146 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS----TTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHh----CCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHH
Confidence 89999999999999999999888766554444332 256665 776543 2222 343 3332 45899
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDM 197 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~ 197 (484)
..+.++++|+.++.+ ++++++......+|++.|.-.+...
T Consensus 147 ~~~~v~~l~~~~g~~-------~~~~~~~~~~~~~~~~~~~p~~i~~ 186 (279)
T 2f1k_A 147 QLACLRSVLEPLGVK-------IYLCTPADHDQAVAWISHLPVMVSA 186 (279)
T ss_dssp HHHHHHHHHGGGTCE-------EEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCE-------EEEcCHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999965 4788888888899999997544443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=158.90 Aligned_cols=254 Identities=19% Similarity=0.214 Sum_probs=155.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc---C---CCCeeecCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE---G---NLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~---~---~~~~~~~~s~~e~~~~l~~advIi 74 (484)
|++|||+|||+|.||..+|..|+++|++|++|+|+ +..+.+.+.+... + ..++..+++++++ .. +|+||
T Consensus 1 M~~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~---~D~Vi 75 (335)
T 3ghy_A 1 MSLTRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAAL-GE---QDVVI 75 (335)
T ss_dssp -CCCCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHHH-CC---CSEEE
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHHc-CC---CCEEE
Confidence 77789999999999999999999999999999996 5666666543210 0 0012334567663 44 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh------------------HHHHHHHHHHHHcC----CeEEeccCCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY------------------ENTERRQKAVAELG----LLYLGMGVSG 132 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~------------------~~~~~~~~~l~~~g----~~~i~~pv~g 132 (484)
+|||.. +++++++.+.+.+.++++||.+.|..+ ...+.+.+.+.... +.++.+...+
T Consensus 76 lavk~~-~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~ 154 (335)
T 3ghy_A 76 VAVKAP-ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVS 154 (335)
T ss_dssp ECCCHH-HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESS
T ss_pred EeCCch-hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcC
Confidence 999995 889999999999999999999988842 11223344433221 1111111222
Q ss_pred CHHhhhcCC-ccccC----CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHH----------------
Q 011501 133 GEEGARYGP-SLMPG----GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNG---------------- 191 (484)
Q Consensus 133 g~~~a~~g~-~i~~g----g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~---------------- 191 (484)
.......+. .+.+| .+.+..+.+..+|+.-+-+ +....+.-...+.|++.|.
T Consensus 155 pg~v~~~~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~ 227 (335)
T 3ghy_A 155 PGHIRHGNGRRLILGEPAGGASPRLASIAALFGRAGLQ-------AECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRI 227 (335)
T ss_dssp TTEEEECSCCEEEEECTTCSCCHHHHHHHHHHHHTTCE-------EEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHH
T ss_pred CcEEEECCCCeEEEecCCCCcCHHHHHHHHHHHhCCCC-------cEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHH
Confidence 111111222 23333 3456677888888876643 2444445555667765442
Q ss_pred -----HHHHHHhHHHHHHHHHHHhCCCCH----HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcC
Q 011501 192 -----IEYGDMQLIAEAYDVLKSVGKLSN----EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTG 262 (484)
Q Consensus 192 -----i~~~~~~~~~Ea~~l~~~~g~~~~----~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 262 (484)
....+..++.|+..++++.| +++ +++.++.+ .. .....++..++...+. .-.+|.+..
T Consensus 228 ~~~~~~~~l~~~~~~E~~~va~a~G-~~~~~~~~~~~~~~~---~~--~~~~sSM~qD~~~gr~----~tEid~i~G--- 294 (335)
T 3ghy_A 228 LDDPLVSAFCLAVMAEAKAIGARIG-CPIEQSGEARSAVTR---QL--GAFKTSMLQDAEAGRG----PLEIDALVA--- 294 (335)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHTTT-CCCCSCHHHHHHHHH---TT--CSCCCTTTC-----CC----CCCHHHHTH---
T ss_pred hcChHHHHHHHHHHHHHHHHHHHcC-CCCCccHHHHHHHHh---cc--CCCCcHHHHHHHcCCC----CchHHHHhh---
Confidence 34566789999999999998 763 22333322 11 1112233344433210 135777766
Q ss_pred CCCchHHHHHHHHHcCCCcchHHH
Q 011501 263 MKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 263 ~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
+.++.|+++|+|+|+...
T Consensus 295 ------~vv~~a~~~gv~~P~~~~ 312 (335)
T 3ghy_A 295 ------SVREIGLHVGVPTPQIDT 312 (335)
T ss_dssp ------HHHHHHHHHTCCCHHHHH
T ss_pred ------HHHHHHHHhCCCCCHHHH
Confidence 478999999999998764
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.67 E-value=5e-17 Score=153.70 Aligned_cols=162 Identities=15% Similarity=0.185 Sum_probs=117.8
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+||||+|||+|.||..+|..|+++|++|.+ |||++++.+.+.+... +....+..+.++. +|+||++||.
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g------~~~~~~~~~~~~~---aDvVilavp~ 91 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFG------ASVKAVELKDALQ---ADVVILAVPY 91 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHT------TTEEECCHHHHTT---SSEEEEESCG
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhC------CCcccChHHHHhc---CCEEEEeCCh
Confidence 4568999999999999999999999999999 9999999888776532 2333344555555 9999999997
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCCh------------HHHHHHHHHHHHcCCeEE------eccCCC-CHHhhhcC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWY------------ENTERRQKAVAELGLLYL------GMGVSG-GEEGARYG 140 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~------------~~~~~~~~~l~~~g~~~i------~~pv~g-g~~~a~~g 140 (484)
. .+.+++.++.+ + ++++||++++..+ ...+.+.+.+. +..++ .+++.. ++. ...+
T Consensus 92 ~-~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~~v~~~g~~-~~~~ 165 (220)
T 4huj_A 92 D-SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVP--GAKVVKAFNTLPAAVLAADPD-KGTG 165 (220)
T ss_dssp G-GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHST--TCEEEEESCSSCHHHHTSCSB-CSSC
T ss_pred H-HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCC--CCCEEECCCCCCHHHhhhCcc-cCCC
Confidence 5 78888888877 5 6889999998763 14455555553 22222 223332 222 2223
Q ss_pred C--ccccCCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHH
Q 011501 141 P--SLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNF 184 (484)
Q Consensus 141 ~--~i~~gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~ 184 (484)
+ .++.|.++++.+.++++|+.+|.+ ++++|+.+.|..
T Consensus 166 ~~~v~~~g~~~~~~~~v~~l~~~~G~~-------~~~~G~l~~a~~ 204 (220)
T 4huj_A 166 SRVLFLSGNHSDANRQVAELISSLGFA-------PVDLGTLAASGP 204 (220)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCE-------EEECCSHHHHHH
T ss_pred CeeEEEeCCCHHHHHHHHHHHHHhCCC-------eEeeCChhhcch
Confidence 3 345566899999999999999976 599999777754
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-18 Score=157.42 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=114.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.|+|+|||+|.||..+|.+|.+.|++|++|||+++ .+.+...+ +... +++++++. +|+||++||+. +
T Consensus 19 ~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g-------~~~~-~~~~~~~~---aDvVilav~~~-~ 85 (201)
T 2yjz_A 19 QGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRG-------AEVL-CYSEAASR---SDVIVLAVHRE-H 85 (201)
Confidence 46899999999999999999999999999999987 44443322 3334 66677666 99999999986 6
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC--------------HHhhhcCC--ccccC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG--------------EEGARYGP--SLMPG 146 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg--------------~~~a~~g~--~i~~g 146 (484)
++.++ ++.+ +.++++|||+++..+... +...+..+++.++.++ ..+...|. .+++|
T Consensus 86 ~~~v~-~l~~-~~~~~ivI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g 157 (201)
T 2yjz_A 86 YDFLA-ELAD-SLKGRVLIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCG 157 (201)
Confidence 77776 4544 347899999999986322 1112223333332222 11221222 57788
Q ss_pred CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH
Q 011501 147 GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMI 188 (484)
Q Consensus 147 g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v 188 (484)
++++.++.++++|+.+|.++ +++|+.|.|..+|.+
T Consensus 158 ~~~~~~~~v~~ll~~~G~~~-------~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 158 NDSKAKDRVMDIARTLGLTP-------LDQGSLVAAKEIENY 192 (201)
Confidence 89999999999999999874 899999999998865
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.9e-15 Score=150.90 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=157.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC--C----CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG--N----LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~--~----~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
++||+|||+|.||..+|..|+++|++|++| +++++++.+.+.+.... + .++..++++++ +.. +|+||++
T Consensus 19 ~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~---~D~vila 93 (318)
T 3hwr_A 19 GMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQG---ADLVLFC 93 (318)
T ss_dssp -CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTT---CSEEEEC
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCC---CCEEEEE
Confidence 479999999999999999999999999999 99988888876542100 0 02334556654 344 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc---CCeEEeccCCCCHHhhhcCC-ccccCCCHHHH
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL---GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAY 152 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~---g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~ 152 (484)
||.. +++++++.+.+.+.++++||.++++.... ..+.+.+.+. ++.+..+..+|.......+. .+.+|. .+..
T Consensus 94 vk~~-~~~~~l~~l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~ 170 (318)
T 3hwr_A 94 VKST-DTQSAALAMKPALAKSALVLSLQNGVENA-DTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHG 170 (318)
T ss_dssp CCGG-GHHHHHHHHTTTSCTTCEEEEECSSSSHH-HHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTT
T ss_pred cccc-cHHHHHHHHHHhcCCCCEEEEeCCCCCcH-HHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHH
Confidence 9997 89999999999999999999998886432 3444444210 11112222222111111122 233444 3445
Q ss_pred HHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHH---------------------HHHHhHHHHHHHHHHHhC
Q 011501 153 KHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIE---------------------YGDMQLIAEAYDVLKSVG 211 (484)
Q Consensus 153 ~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~---------------------~~~~~~~~Ea~~l~~~~g 211 (484)
+.++.+|..-+-+ ++...+.-...+.|++-|... .....++.|+..++++.|
T Consensus 171 ~~l~~~l~~~~~~-------~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G 243 (318)
T 3hwr_A 171 ANLAAIFAAAGVP-------VETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEG 243 (318)
T ss_dssp HHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCC-------cEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcC
Confidence 6788888876643 344455666778888777422 334568899999999998
Q ss_pred CCCH--HHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 212 KLSN--EELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 212 ~~~~--~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
++. +....++....... ....++..++...+. ..+|.+.. +.++.|+++|+|+|+...
T Consensus 244 -~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~tP~~~~ 303 (318)
T 3hwr_A 244 -VKLPDDVALAIRRIAETMP--RQSSSTAQDLARGKR-----SEIDHLNG---------LIVRRGDALGIPVPANRV 303 (318)
T ss_dssp -CCCCTTHHHHHHHHHHHST--TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred -CCCChHHHHHHHHHHHhcC--CCCcHHHHHHHcCCh-----hHHHHHHH---------HHHHHHHHhCCCCcHHHH
Confidence 762 21122211111111 222333444443221 24555544 578999999999998764
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-16 Score=156.68 Aligned_cols=183 Identities=9% Similarity=0.050 Sum_probs=123.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+|+|||||+|.||..|+..|+++ ++| .+|||++++.+.+.+.. +. .+.+++++++. +|+||+|||+.
T Consensus 2 ~m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~------g~-~~~~~~~~~~~---~DvVilav~~~- 69 (276)
T 2i76_A 2 SLVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVY------GG-KAATLEKHPEL---NGVVFVIVPDR- 69 (276)
T ss_dssp --CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHT------CC-CCCSSCCCCC------CEEECSCTT-
T ss_pred CceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHc------CC-ccCCHHHHHhc---CCEEEEeCChH-
Confidence 46899999999999999999998 999 59999999988876543 23 45677776665 99999999997
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhh--cCCccccCCCHHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGAR--YGPSLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~--~g~~i~~gg~~~~~~~v~~ll 159 (484)
.+.+++.++. .++++||++|+..+.+..+.. ..+..+...++++++.... .+..++++++++.++.++++|
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~~----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 142 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKKS----GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIA 142 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCSS----SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHH
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHHh----hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHH
Confidence 5777776654 578999999977655432211 1112223345666554433 333567778888899999999
Q ss_pred HHHhccCCCCCCceEEeCCchhH---HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSG---NFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g---~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
+.+|.+ ++++++.+.. ...+++.|.+. .++.|+..++.+.| ++.+
T Consensus 143 ~~lG~~-------~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~~~~~~~G-l~~~ 190 (276)
T 2i76_A 143 EEISGK-------YFVIPSEKKKAYHLAAVIASNFPV----ALAYLSKRIYTLLG-LDEP 190 (276)
T ss_dssp HHHCSC-------EEECCGGGHHHHHHHHHHHHTTHH----HHHHHHHHHHHTTT-CSCH
T ss_pred HHhCCC-------EEEECHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcC-CChH
Confidence 999965 4888864422 34467777554 35678888888888 9987
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.9e-15 Score=156.88 Aligned_cols=191 Identities=15% Similarity=0.229 Sum_probs=134.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-----------hhhcC----CCCeeecCCHhHHHhh
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-----------AKQEG----NLPLYGFHDPESFVHS 66 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-----------~~~~~----~~~~~~~~s~~e~~~~ 66 (484)
.+++|+|||+|.||.+||..|+++|++|++||+++++++.+.+. +.-.. ......+++++ .++.
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~-~~~~ 114 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELST 114 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCGG-GGTT
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCHH-HHCC
Confidence 35689999999999999999999999999999999887765432 10000 00123455663 3444
Q ss_pred cCCCcEEEEecCCCchH-HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccCCCCHHhhhcCC
Q 011501 67 IQKPRVIIMLVKAGSPV-DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGVSGGEEGARYGP 141 (484)
Q Consensus 67 l~~advIi~~vp~~~~v-~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv~gg~~~a~~g~ 141 (484)
+|+||+|||....+ ..++.++.+.++++.+|++ +|+.+..+ ++.+.+.. .|.||+ .|+. .++
T Consensus 115 ---aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~~ 181 (463)
T 1zcj_A 115 ---VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VMR 181 (463)
T ss_dssp ---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TCC
T ss_pred ---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc-------cce
Confidence 99999999987544 4666888888989999987 44444444 44443321 256665 4543 223
Q ss_pred --ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 142 --SLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 142 --~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
.++.| +++++++.++++++.+++. ++++++ ..|. +.|.+... .++|++.++++ | +++++
T Consensus 182 lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~~-~~gf----i~Nrll~~---~~~ea~~l~~~-G-~~~~~ 244 (463)
T 1zcj_A 182 LLEVIPSRYSSPTTIATVMSLSKKIGKI-------GVVVGN-CYGF----VGNRMLAP---YYNQGFFLLEE-G-SKPED 244 (463)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEBCC-STTT----THHHHHHH---HHHHHHHHHHT-T-CCHHH
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHhCCE-------EEEECC-CccH----HHHHHHHH---HHHHHHHHHHc-C-CCHHH
Confidence 34443 6899999999999999965 488886 3443 44544433 35999999887 7 99999
Q ss_pred HHHHHH
Q 011501 218 LQQVFS 223 (484)
Q Consensus 218 i~~~~~ 223 (484)
+.+++.
T Consensus 245 id~~~~ 250 (463)
T 1zcj_A 245 VDGVLE 250 (463)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999985
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=3e-15 Score=147.98 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=133.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+||| +|.||.++|..|+++|++|++|||+++. ++.+++.. +|+||+|||.. .
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~--------------------~~~~~~~~---aDvVilavp~~-~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA--------------------VAESILAN---ADVVIVSVPIN-L 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG--------------------GHHHHHTT---CSEEEECSCGG-G
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc--------------------CHHHHhcC---CCEEEEeCCHH-H
Confidence 5899999 9999999999999999999999998642 33455555 99999999987 6
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec-cCCCCHHhhhcCC-cccc-CCCHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM-GVSGGEEGARYGP-SLMP-GGSFEAYKHIEDIL 159 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~-pv~gg~~~a~~g~-~i~~-gg~~~~~~~v~~ll 159 (484)
+.++++++.+.++++.+|+|++++.......+.+. .+..|++. |++|++.....|. .++. +.+++.++.++++|
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~ 154 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQI 154 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHH
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHH
Confidence 99999999999999999999998876555444333 34678875 8888765555665 4443 44788899999999
Q ss_pred HHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHH
Q 011501 160 LKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQ 220 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~ 220 (484)
+.+|.+ ++++++......++++.++-.+....+ .+++ ...| ++.++..+
T Consensus 155 ~~~G~~-------~~~~~~~~~d~~~a~~~~~p~~~a~~l-~~~l---~~~g-~~~~~~~~ 203 (298)
T 2pv7_A 155 QIWGAK-------IYQTNATEHDHNMTYIQALRHFSTFAN-GLHL---SKQP-INLANLLA 203 (298)
T ss_dssp HHTTCE-------EEECCHHHHHHHHHHHTHHHHHHHHHH-HHHH---TTSS-CCHHHHHH
T ss_pred HHcCCE-------EEECCHHHHHHHHHHHHHHHHHHHHHH-HHHH---HhcC-CCHHHHHh
Confidence 999975 477776666778888877654433322 2332 1356 88766544
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=165.23 Aligned_cols=191 Identities=14% Similarity=0.189 Sum_probs=133.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-------hhhcCCC----------CeeecCCHhHHH
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-------AKQEGNL----------PLYGFHDPESFV 64 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-------~~~~~~~----------~~~~~~s~~e~~ 64 (484)
..++|||||+|.||.+||.+|+++||+|++||+++++++..... ....|.. +++.++++ +.+
T Consensus 313 ~i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~ 391 (715)
T 1wdk_A 313 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF 391 (715)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred cCCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence 34689999999999999999999999999999999987764221 0000000 14556677 445
Q ss_pred hhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccCCCCHHhhhc
Q 011501 65 HSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGVSGGEEGARY 139 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv~gg~~~a~~ 139 (484)
+. +|+||+|||++..++ .++.++.+.++++.+|++.+++.+.+ ++.+.+.. .|.||++ |+. .
T Consensus 392 ~~---aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~~~~~ig~hf~~-P~~-------~ 458 (715)
T 1wdk_A 392 GN---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISIS--LLAKALKRPENFVGMHFFN-PVH-------M 458 (715)
T ss_dssp GG---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH--HHGGGCSCGGGEEEEECCS-STT-------T
T ss_pred CC---CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHH--HHHHHhcCccceEEEEccC-Ccc-------c
Confidence 55 999999999986665 56688888899999998765554432 23332211 2455554 332 2
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCH
Q 011501 140 GP--SLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSN 215 (484)
Q Consensus 140 g~--~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~ 215 (484)
++ .++.|. ++++++.+.++++.+|+. ++++++. .|. +.|.+.. ..++|++.++++ | +++
T Consensus 459 ~~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~ 521 (715)
T 1wdk_A 459 MPLVEVIRGEKSSDLAVATTVAYAKKMGKN-------PIVVNDC-PGF----LVNRVLF---PYFGGFAKLVSA-G-VDF 521 (715)
T ss_dssp CCEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESC-TTT----THHHHHH---HHHHHHHHHHHT-T-CCH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHhCCE-------eEEEcCC-CCh----hhhHHHH---HHHHHHHHHHHC-C-CCH
Confidence 33 345554 899999999999999965 4888863 443 3444443 467999999997 7 999
Q ss_pred HHHHHHHH
Q 011501 216 EELQQVFS 223 (484)
Q Consensus 216 ~~i~~~~~ 223 (484)
+++.+++.
T Consensus 522 ~~id~~~~ 529 (715)
T 1wdk_A 522 VRIDKVME 529 (715)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998873
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=164.45 Aligned_cols=190 Identities=15% Similarity=0.209 Sum_probs=134.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh-------hhcCC----------CCeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA-------KQEGN----------LPLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~-------~~~~~----------~~~~~~~s~~e~~~ 65 (484)
+++|+|||+|.||.+||.+|+++||+|++||+++++++...+.. ...|. -+++.+++++ .++
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~~-~~~ 390 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDYE-SFR 390 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSSG-GGT
T ss_pred CcEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCHH-HHC
Confidence 46899999999999999999999999999999999877653310 00000 0355666773 444
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH----cCCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE----LGLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~----~g~~~i~~pv~gg~~~a~~g 140 (484)
. +|+||+|||++..++ .++.++.+.++++.+|++.+++.+.+ ++.+.+.. .|.||++ |+. ..
T Consensus 391 ~---aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~--~la~~~~~p~~~iG~hf~~-P~~-------~~ 457 (725)
T 2wtb_A 391 D---VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLN--KIGERTKSQDRIVGAHFFS-PAH-------IM 457 (725)
T ss_dssp T---CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHH--HHTTTCSCTTTEEEEEECS-STT-------TC
T ss_pred C---CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHH--HHHHHhcCCCCEEEecCCC-Ccc-------cC
Confidence 4 999999999986654 56688888999999987765554433 23322211 2566665 432 23
Q ss_pred C--ccccCC--CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHH
Q 011501 141 P--SLMPGG--SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNE 216 (484)
Q Consensus 141 ~--~i~~gg--~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~ 216 (484)
+ .++.|. ++++++.+.++++.+++. ++++++. .|. +.|.+.. ..++|++.++++ | ++++
T Consensus 458 ~lvevv~g~~t~~e~~~~~~~l~~~lGk~-------~v~v~d~-~Gf----i~Nril~---~~~~Ea~~l~~~-G-~~~e 520 (725)
T 2wtb_A 458 PLLEIVRTNHTSAQVIVDLLDVGKKIKKT-------PVVVGNC-TGF----AVNRMFF---PYTQAAMFLVEC-G-ADPY 520 (725)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCE-------EEEEESS-TTT----THHHHHH---HHHHHHHHHHHT-T-CCHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHhCCE-------EEEECCC-ccH----HHHHHHH---HHHHHHHHHHHC-C-CCHH
Confidence 3 344553 899999999999999965 4888863 443 3454443 467999999997 7 9999
Q ss_pred HHHHHHH
Q 011501 217 ELQQVFS 223 (484)
Q Consensus 217 ~i~~~~~ 223 (484)
++.+++.
T Consensus 521 ~id~~~~ 527 (725)
T 2wtb_A 521 LIDRAIS 527 (725)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.6e-15 Score=149.97 Aligned_cols=251 Identities=16% Similarity=0.109 Sum_probs=157.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhh-----cCCC---CeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQ-----EGNL---PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~-----~~~~---~~~~~~s~~e~~~~l~~advIi 74 (484)
+|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+.. .+.+ ++..+.+++++.+. +|+||
T Consensus 2 ~mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~---~DlVi 76 (320)
T 3i83_A 2 SLNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETK---PDCTL 76 (320)
T ss_dssp -CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSC---CSEEE
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCC---CCEEE
Confidence 3699999999999999999999999999999986 3555554310 0000 12334566665534 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC------HHhhhcCC-cccc--
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG------EEGARYGP-SLMP-- 145 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg------~~~a~~g~-~i~~-- 145 (484)
++||.. +++++++.+.+.+.++++||.+.++... .+.+.+.+... .++.+++..+ ......++ .+.+
T Consensus 77 lavK~~-~~~~~l~~l~~~l~~~t~Iv~~~nGi~~-~~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~ 152 (320)
T 3i83_A 77 LCIKVV-EGADRVGLLRDAVAPDTGIVLISNGIDI-EPEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGN 152 (320)
T ss_dssp ECCCCC-TTCCHHHHHTTSCCTTCEEEEECSSSSC-SHHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EecCCC-ChHHHHHHHHhhcCCCCEEEEeCCCCCh-HHHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEec
Confidence 999997 6788999999999999999998887531 13344444332 3444443321 11112233 3333
Q ss_pred --CCCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH--------------------HHHHHhHHHHH
Q 011501 146 --GGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI--------------------EYGDMQLIAEA 203 (484)
Q Consensus 146 --gg~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i--------------------~~~~~~~~~Ea 203 (484)
+.+.+..+.+..+|+.-+-+ +.+..+.-...+.|++-|.. ......++.|+
T Consensus 153 ~~~~~~~~~~~l~~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~ 225 (320)
T 3i83_A 153 YPGGVSERVKTLAAAFEEAGID-------GIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEI 225 (320)
T ss_dssp SSSCCCHHHHHHHHHHHHTTSC-------EEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHhCCCC-------ceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHH
Confidence 34556777888888876643 35555567777788877631 22345788999
Q ss_pred HHHHHHhCCCCHH-H-HHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCc
Q 011501 204 YDVLKSVGKLSNE-E-LQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAA 281 (484)
Q Consensus 204 ~~l~~~~g~~~~~-~-i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~ 281 (484)
..++++.| ++.+ + +..++....... ....++..++...+. -.+|.+.. +.++.|+++|+|+
T Consensus 226 ~~va~a~G-~~l~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~ 288 (320)
T 3i83_A 226 RAVAAANG-HPLPEDIVEKNVASTYKMP--PYKTSMLVDFEAGQP-----METEVILG---------NAVRAGRRTRVAI 288 (320)
T ss_dssp HHHHHHTT-CCCCTTHHHHHHHHHHHSC--CCCCHHHHHHHHTCC-----CCHHHHTH---------HHHHHHHHTTCCC
T ss_pred HHHHHHcC-CCCChHHHHHHHHHHhcCC--CCCCcHHHHHHhCCC-----chHHHHcc---------HHHHHHHHhCCCC
Confidence 99999998 7632 1 222221111111 112233344433221 35677655 5789999999999
Q ss_pred chHHH
Q 011501 282 PTIES 286 (484)
Q Consensus 282 p~~~~ 286 (484)
|+...
T Consensus 289 P~~~~ 293 (320)
T 3i83_A 289 PHLES 293 (320)
T ss_dssp HHHHH
T ss_pred CHHHH
Confidence 98764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-14 Score=143.36 Aligned_cols=256 Identities=13% Similarity=0.152 Sum_probs=156.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhc----CCC---CeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQE----GNL---PLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~----~~~---~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||..+|..|+++|++|++|+|++ .+.+.+.+... +.. ++..++++++ +.. +|+||++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~---~D~vila 76 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGP---MDLVLVG 76 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCC---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCC---CCEEEEe
Confidence 689999999999999999999999999999986 35555443210 000 1223455554 343 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccC----C
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPG----G 147 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~g----g 147 (484)
||.. +++++++.+.+.+.++++||.+.++.. ..+.+.+.+... ++.++.+-..+.......++ .+.+| .
T Consensus 77 vk~~-~~~~~l~~l~~~l~~~~~iv~l~nGi~-~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~ 154 (312)
T 3hn2_A 77 LKTF-ANSRYEELIRPLVEEGTQILTLQNGLG-NEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPR 154 (312)
T ss_dssp CCGG-GGGGHHHHHGGGCCTTCEEEECCSSSS-HHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCC
T ss_pred cCCC-CcHHHHHHHHhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCC
Confidence 9987 788999999999999999999988862 223444444332 22233333333211112223 33333 3
Q ss_pred CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH---------------------HHHHHhHHHHHHHH
Q 011501 148 SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI---------------------EYGDMQLIAEAYDV 206 (484)
Q Consensus 148 ~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i---------------------~~~~~~~~~Ea~~l 206 (484)
+.+..+.+..+|+.-+-+ +.+..+.-...+-|++-|.. ......++.|+..+
T Consensus 155 ~~~~~~~l~~~l~~~g~~-------~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~v 227 (312)
T 3hn2_A 155 DTGRIEELAAMFRQAGVD-------CRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAG 227 (312)
T ss_dssp CSHHHHHHHHHHHHTTCC-------EEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhCCCC-------cEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHH
Confidence 456677788888876643 24444455566677766643 33455678899999
Q ss_pred HHHhC---CCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcch
Q 011501 207 LKSVG---KLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPT 283 (484)
Q Consensus 207 ~~~~g---~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~ 283 (484)
+++.| .++.+.+..++....... ....++..++...+. -.+|.+.. +.++.|+++|+|+|+
T Consensus 228 a~a~G~~~~~~~~~~~~~~~~~~~~~--~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~ 291 (312)
T 3hn2_A 228 ANAQGLATFIADGYVDDMLEFTDAMG--EYKPSMEIDREEGRP-----LEIAAIFR---------TPLAYGAREGIAMPR 291 (312)
T ss_dssp HHTSCCSSCCCTTHHHHHHHHHTTSC--SCCCHHHHHHHTTCC-----CCHHHHTH---------HHHHHHHHTTCCCHH
T ss_pred HHHcCCccCCCHHHHHHHHHHHhcCC--CCCchHHHHHHhCCC-----ccHHHHhh---------HHHHHHHHhCCCCCH
Confidence 98876 233322333332111111 112233344433221 35676655 578999999999998
Q ss_pred HHHHHHHH
Q 011501 284 IESSLDAR 291 (484)
Q Consensus 284 ~~~av~~r 291 (484)
... ++..
T Consensus 292 ~~~-l~~l 298 (312)
T 3hn2_A 292 VEM-LATL 298 (312)
T ss_dssp HHH-HHHH
T ss_pred HHH-HHHH
Confidence 764 3443
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-16 Score=144.94 Aligned_cols=165 Identities=20% Similarity=0.201 Sum_probs=117.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|+|+|||+|.||..++..|+++|++|.+|||++++.+.+.+.+ +... +.+++++. +|+||+++|.. .
T Consensus 28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g-------~~~~-~~~~~~~~---~DvVi~av~~~-~ 95 (215)
T 2vns_A 28 APKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSA-------AQVT-FQEEAVSS---PEVIFVAVFRE-H 95 (215)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTT-------SEEE-EHHHHTTS---CSEEEECSCGG-G
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------Ccee-cHHHHHhC---CCEEEECCChH-H
Confidence 46899999999999999999999999999999998877664322 3444 67776665 99999999974 5
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHH----HHHHHHH--cCCeEEec--cCCCCH--HhhhcCC--ccccCCCHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTER----RQKAVAE--LGLLYLGM--GVSGGE--EGARYGP--SLMPGGSFE 150 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~----~~~~l~~--~g~~~i~~--pv~gg~--~~a~~g~--~i~~gg~~~ 150 (484)
++++++ +.+.+ ++++|||+++..+..+.+ ..+.+.+ .+..++.+ ++++.. ++...|+ .++.|++++
T Consensus 96 ~~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~ 173 (215)
T 2vns_A 96 YSSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPE 173 (215)
T ss_dssp SGGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHH
T ss_pred HHHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCHH
Confidence 666665 55556 899999999998654421 1122221 12233321 221111 1122333 567788999
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMI 188 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v 188 (484)
.++.++++|+.+|.+ ++++|+.|+|+.++.+
T Consensus 174 ~~~~v~~ll~~~G~~-------~~~~g~~~~~~~~e~~ 204 (215)
T 2vns_A 174 AKRAVSEMALAMGFM-------PVDMGSLASAWEVEAM 204 (215)
T ss_dssp HHHHHHHHHHHTTCE-------EEECCSGGGHHHHHHS
T ss_pred HHHHHHHHHHHcCCc-------eEeecchhhhhHhhhh
Confidence 999999999999976 5999999999988754
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-15 Score=142.31 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=112.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++|+|||+|.||..+|..|+++|++|++|||+++ .++. +|+||+++|+ ..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-------------------------~~~~---aD~vi~av~~-~~ 69 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-------------------------ATTL---GEIVIMAVPY-PA 69 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-------------------------CSSC---CSEEEECSCH-HH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-------------------------Hhcc---CCEEEEcCCc-HH
Confidence 47899999999999999999999999999998854 1123 8999999994 58
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh-H--------H----HHHHHHHHHHcCCeEEec-cCCCCHHhhh---cC--C-c
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY-E--------N----TERRQKAVAELGLLYLGM-GVSGGEEGAR---YG--P-S 142 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~-~--------~----~~~~~~~l~~~g~~~i~~-pv~gg~~~a~---~g--~-~ 142 (484)
++++++++.+.++ +++||++++..+ . . ++.+.+.+. +..++.+ ....++..+. .+ + .
T Consensus 70 ~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~ 146 (209)
T 2raf_A 70 LAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTT 146 (209)
T ss_dssp HHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECE
T ss_pred HHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCce
Confidence 8899999988887 999999998553 1 1 344444332 4667772 2222222221 23 3 4
Q ss_pred cccCC-CHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH
Q 011501 143 LMPGG-SFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI 192 (484)
Q Consensus 143 i~~gg-~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i 192 (484)
++++| +++..+.++++|+.++.+ ++++++.+.+..+|++.|.+
T Consensus 147 ~~~~g~~~~~~~~v~~ll~~~G~~-------~~~~~~i~~a~~~K~i~~l~ 190 (209)
T 2raf_A 147 VLVAGNDDSAKQRFTRALADSPLE-------VKDAGKLKRARELEAMGFMQ 190 (209)
T ss_dssp EEEEESCHHHHHHHHHHTTTSSCE-------EEEEESGGGHHHHHHHHHHH
T ss_pred eEEcCCCHHHHHHHHHHHHHcCCc-------eEeCCCHhHHHHhcchHHHH
Confidence 55555 568899999999999865 48999999999999998754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.7e-14 Score=141.48 Aligned_cols=193 Identities=17% Similarity=0.211 Sum_probs=135.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcC----CC-------CeeecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEG----NL-------PLYGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~----~~-------~~~~~~s~~e~~~ 65 (484)
.||+|||+|.||.++|..++.+|++|.+||++++.++...+... ..+ .. ++..++++++.++
T Consensus 7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~ 86 (319)
T 3ado_A 7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVE 86 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTT
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhc
Confidence 58999999999999999999999999999999987654432211 111 00 3566778888777
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEecc-CCCCHHhhhc
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMG-VSGGEEGARY 139 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~p-v~gg~~~a~~ 139 (484)
. +|+|+.+||....++ +++.+|.+.++++.|+-..|++.+.+ ++++.+... |.||+..| ++.-.+
T Consensus 87 ~---ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is--~ia~~~~~p~r~ig~HffNP~~~m~LVE---- 157 (319)
T 3ado_A 87 G---VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPS--KLFTGLAHVKQCIVAHPVNPPYYIPLVE---- 157 (319)
T ss_dssp T---EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHH--HHHTTCTTGGGEEEEEECSSTTTCCEEE----
T ss_pred c---CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccch--hhhhhccCCCcEEEecCCCCccccchHH----
Confidence 6 999999999998877 55588888888887776655554432 333333221 56666554 221111
Q ss_pred CCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHH
Q 011501 140 GPSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEE 217 (484)
Q Consensus 140 g~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~ 217 (484)
++.| .++++++.+..+++.+++++ +.+-.+..| ++.|.+. ..++.|++.+....+ .++++
T Consensus 158 ---iv~g~~Ts~~~~~~~~~~~~~~gk~p-------v~v~kd~pG----Fi~NRl~---~~~~~EA~~lv~eGv-as~ed 219 (319)
T 3ado_A 158 ---LVPHPETSPATVDRTHALMRKIGQSP-------VRVLKEIDG----FVLNRLQ---YAIISEAWRLVEEGI-VSPSD 219 (319)
T ss_dssp ---EEECTTCCHHHHHHHHHHHHHTTCEE-------EECSSCCTT----TTHHHHH---HHHHHHHHHHHHTTS-SCHHH
T ss_pred ---hcCCCCCcHHHHHHHHHHHHHhCCcc-------CCcCCCCCC----EeHHHHH---HHHHHHHHHHHHhCC-CCHHH
Confidence 3444 38999999999999999764 444333445 4456554 355699999999887 99999
Q ss_pred HHHHHH
Q 011501 218 LQQVFS 223 (484)
Q Consensus 218 i~~~~~ 223 (484)
+..++.
T Consensus 220 ID~~~~ 225 (319)
T 3ado_A 220 LDLVMS 225 (319)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998873
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-15 Score=152.68 Aligned_cols=280 Identities=11% Similarity=-0.007 Sum_probs=172.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--------cEEEEeCChhH-----HHHHHHHhhhcC---CC----CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--------PISVYNRTTSK-----VDETVERAKQEG---NL----PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--------~V~v~dr~~~~-----~~~~~~~~~~~~---~~----~~~~~~s~~e~ 63 (484)
.||+|||.|.||++||..|+++|+ +|.+|.|+++. .+.+...+.+.. +. ++..+++++++
T Consensus 35 ~KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~a 114 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDS 114 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHH
Confidence 389999999999999999999875 49999988753 333333322210 00 57788899998
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH---HHHHHHHHH-cCC--eEEeccCCCCHHhh
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT---ERRQKAVAE-LGL--LYLGMGVSGGEEGA 137 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~-~g~--~~i~~pv~gg~~~a 137 (484)
++. +|+||++||.. .++++++++.++++++.++|.++.+.-..+ +.+.+.+.+ .+. .++..|-+. .+-+
T Consensus 115 l~~---ad~ii~avPs~-~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A-~EVa 189 (391)
T 4fgw_A 115 VKD---VDIIVFNIPHQ-FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIA-TEVA 189 (391)
T ss_dssp HTT---CSEEEECSCGG-GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCH-HHHH
T ss_pred Hhc---CCEEEEECChh-hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchH-HHhh
Confidence 887 99999999986 899999999999999999999987753212 122333322 233 334445442 3445
Q ss_pred hcCC-ccccCC-CH---------HHHHHHHHHHHH-----------HhccCCCCCCceEEeCCchhHHHHHHHHHHHHHH
Q 011501 138 RYGP-SLMPGG-SF---------EAYKHIEDILLK-----------VAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYG 195 (484)
Q Consensus 138 ~~g~-~i~~gg-~~---------~~~~~v~~ll~~-----------i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~ 195 (484)
+.-| .+.++. ++ ...+.++.+|.. +|.++....|+++-++ .|....+++-.|...+.
T Consensus 190 ~~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIA-aGi~dGlg~G~NakAAL 268 (391)
T 4fgw_A 190 QEHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALG-CGFVEGLGWGNNASAAI 268 (391)
T ss_dssp TTCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHH-HHHHHHTTCHHHHHHHH
T ss_pred cCCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHH-HHHHhcCCCCCCHHHHH
Confidence 5555 443332 21 223456666621 1211111225555554 36666777889999999
Q ss_pred HHhHHHHHHHHHHHh--CCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCC-CchhHHHhhhhc--CCCCchHHH
Q 011501 196 DMQLIAEAYDVLKSV--GKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKG-DGYLVDKVLDKT--GMKGTGKWT 270 (484)
Q Consensus 196 ~~~~~~Ea~~l~~~~--g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~-~~~~l~~i~~~~--~~k~tg~~~ 270 (484)
+...++|+..++.+. ||-++..+... .|-++-.+.-..++..+.+..+. .+..++.+.+.+ +|+.+|..+
T Consensus 269 itrGl~Em~rlg~al~~~g~~~tt~~gl-----aGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~t 343 (391)
T 4fgw_A 269 QRVGLGEIIRFGQMFFPESREETYYQES-----AGVADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLIT 343 (391)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHHHHHST-----TTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeecCC-----CcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHH
Confidence 999999999999987 32443333211 12222111111111111111111 234566666665 788999887
Q ss_pred HH----HHHHcCC--CcchHHHHHHHHHHhc
Q 011501 271 VQ----QAADLSV--AAPTIESSLDARFLSG 295 (484)
Q Consensus 271 ~~----~A~~~gv--p~p~~~~av~~r~~s~ 295 (484)
+. .++++|+ .+|++. +|++-+...
T Consensus 344 a~~v~~l~~~~~v~~emPI~~-~vy~IL~~~ 373 (391)
T 4fgw_A 344 CKEVHEWLETCGSVEDFPLFE-AVYQIVYNN 373 (391)
T ss_dssp HHHHHHHHHHHTCSTTCHHHH-HHHHHHHSC
T ss_pred HHHHHHHHHHcCCCCCCCHHH-HHHHHHhCC
Confidence 75 4678899 899765 567766654
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.2e-15 Score=154.77 Aligned_cols=119 Identities=8% Similarity=0.145 Sum_probs=100.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHccCCCCCCc
Q 011501 320 TVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRI---WKGGCIIRAIFLDRIKKAYDRNPDLANV 396 (484)
Q Consensus 320 ~~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~Gcii~s~ll~~i~~~~~~~~~~~~l 396 (484)
+.+++|++||+||+++|++|+.++|+|.++++ ..++|..+++++ |+.| .++|++++...+++.+++.....
T Consensus 177 ~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~-----~~Gld~~~l~~v~~~w~~G-~~~S~l~e~~~~~l~~~D~~g~~ 250 (484)
T 4gwg_A 177 DEGAGHFVKMVHNGIEYGDMQLICEAYHLMKD-----VLGMAQDEMAQAFEDWNKT-ELDSFLIEITANILKFQDTDGKH 250 (484)
T ss_dssp ETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TSCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCCHHHHHHHHHHHcCC-CccchHHHHHHHHHhcCCccCCc
Confidence 35899999999999999999999999999986 245887666555 9999 78999999999999864433557
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCcc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERLP 446 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~~ 446 (484)
++|.+.+...+|++| ||+++.|+++|+|+|+|++||+ ++++++.+|..
T Consensus 251 ~ld~i~d~~~~kgtG--~wt~~~A~~~gvp~p~i~~av~~R~~S~~k~~r~~ 300 (484)
T 4gwg_A 251 LLPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQ 300 (484)
T ss_dssp SGGGSCCCCCSSCTT--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHH
T ss_pred cHHHHhccccCcchH--HHHHHHHHHcCCCchHHHHHHHHHHHhhchHHHHH
Confidence 888888888889999 9999999999999999999997 77777766543
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.8e-14 Score=131.41 Aligned_cols=155 Identities=10% Similarity=0.109 Sum_probs=114.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.|||+|||+|.||.+||.+|.++|++|.+||+.. + +.. +| |+|||+. .
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~~-------------------------~-~~~---aD--ilavP~~-a 53 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAPE-------------------------D-IRD---FE--LVVIDAH-G 53 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSGG-------------------------G-GGG---CS--EEEECSS-C
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCHH-------------------------H-hcc---CC--EEEEcHH-H
Confidence 4799999999999999999999999999999830 1 233 89 9999997 8
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLK 161 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~ 161 (484)
+.+++.++.+.+.+|++|+|+|++..... .+.+...|..|++ .|+.|.. .++.++++++++.++++++.
T Consensus 54 i~~vl~~l~~~l~~g~ivvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~~-------~~i~a~d~~a~~~l~~L~~~ 123 (232)
T 3dfu_A 54 VEGYVEKLSAFARRGQMFLHTSLTHGITV---MDPLETSGGIVMSAHPIGQDR-------WVASALDELGETIVGLLVGE 123 (232)
T ss_dssp HHHHHHHHHTTCCTTCEEEECCSSCCGGG---GHHHHHTTCEEEEEEEEETTE-------EEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCCc-------eeeeCCCHHHHHHHHHHHHH
Confidence 99999999999999999999876654433 3334467899996 5886542 34455688899999999999
Q ss_pred HhccCCCCCCceEEeCCchhHHH-HHHHHHHHHHHHHhHHHHHHHHHHH
Q 011501 162 VAAQVPDSGPCVTYVGKGGSGNF-VKMIHNGIEYGDMQLIAEAYDVLKS 209 (484)
Q Consensus 162 i~~~~~~~~~~~~~~G~~g~g~~-~K~v~N~i~~~~~~~~~Ea~~l~~~ 209 (484)
+|+++ +++++...-.+ .-.+|+ .-...++.++..+++.
T Consensus 124 lG~~v-------v~~~~~~hd~~~AAvsh~---nhLv~L~~~A~~ll~~ 162 (232)
T 3dfu_A 124 LGGSI-------VEIADDKRAQLAAALTYA---GFLSTLQRDASYFLDE 162 (232)
T ss_dssp TTCEE-------CCCCGGGHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hCCEE-------EEeCHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 99874 77876433322 222332 2234556666666643
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=136.13 Aligned_cols=193 Identities=15% Similarity=0.100 Sum_probs=126.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|+|||+|.||.++|.+|.+.|++|++|||++++..+..... ++..+ +++++++. +|+||++||+. .
T Consensus 16 ~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~------G~~~~-~~~e~~~~---aDvVilavp~~-~ 84 (338)
T 1np3_A 16 GKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH------GLKVA-DVKTAVAA---ADVVMILTPDE-F 84 (338)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT------TCEEE-CHHHHHHT---CSEEEECSCHH-H
T ss_pred CCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC------CCEEc-cHHHHHhc---CCEEEEeCCcH-H
Confidence 36899999999999999999999999999999987633332221 24455 88888877 99999999987 5
Q ss_pred HHHHHH-HHhhhcCCCCEEEecCCCChHHHHHHHHHHH-HcCCeEEec-cCCCCHHh---hh---cCC-cc-cc--CCCH
Q 011501 83 VDQTIK-TLSVYMEKGDCIIDGGNEWYENTERRQKAVA-ELGLLYLGM-GVSGGEEG---AR---YGP-SL-MP--GGSF 149 (484)
Q Consensus 83 v~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~-~~g~~~i~~-pv~gg~~~---a~---~g~-~i-~~--gg~~ 149 (484)
..+++. ++.+.++++.+|+|+++.. . .+ ..+. ..++.++.. | +|.... .. .|. .+ .+ +.++
T Consensus 85 ~~~v~~~~i~~~l~~~~ivi~~~gv~---~-~~-~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~ 158 (338)
T 1np3_A 85 QGRLYKEEIEPNLKKGATLAFAHGFS---I-HY-NQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASG 158 (338)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCCHH---H-HT-TSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSS
T ss_pred HHHHHHHHHHhhCCCCCEEEEcCCch---h-HH-HhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCH
Confidence 688888 9999999999999986432 1 22 2222 345666654 5 433221 11 254 43 33 3467
Q ss_pred HHHHHHHHHHHHHhc-cCCCCCCceEEeCCchhHHHHHHHHH-HHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 150 EAYKHIEDILLKVAA-QVPDSGPCVTYVGKGGSGNFVKMIHN-GIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 150 ~~~~~v~~ll~~i~~-~~~~~~~~~~~~G~~g~g~~~K~v~N-~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
++.+.++.+++.+|. +. .++.+....-.....++.+ .+..+...+++.++..+.+.| +++++.
T Consensus 159 ~a~~~~~~l~~~lG~~~a-----gv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~G-l~~~~a 223 (338)
T 1np3_A 159 NAKNVALSYACGVGGGRT-----GIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAG-YAPEMA 223 (338)
T ss_dssp CHHHHHHHHHHHTTHHHH-----CEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHHHHHHcCCCcc-----ceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCHHHH
Confidence 788999999999996 30 0245543222223334333 333334455566666666788 998765
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-14 Score=142.61 Aligned_cols=246 Identities=13% Similarity=0.143 Sum_probs=146.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHH-hhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV-HSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~-~~l~~advIi~~vp~~~ 81 (484)
+|||+|||+|.||..+|..|+++|++|++|+|+++.++.....+ ........++.+.+ . .+|+||++||..
T Consensus 2 ~mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g----~~~~~~~~~~~~~~~~---~~D~vilavk~~- 73 (294)
T 3g17_A 2 SLSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPH----APAQDIVVKGYEDVTN---TFDVIIIAVKTH- 73 (294)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTT----SCCEEEEEEEGGGCCS---CEEEEEECSCGG-
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCC----eeccceecCchHhcCC---CCCEEEEeCCcc-
Confidence 36999999999999999999999999999999976432111001 00112222333332 3 389999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIE 156 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~ 156 (484)
+++++++.+.+.+.++++||.+.++...... +... |+.++.+-..|. ..+..++ .+.. ++.+..+.+.
T Consensus 74 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~~p-g~v~~~~~~~~~-~~~~~~~~l~ 146 (294)
T 3g17_A 74 QLDAVIPHLTYLAHEDTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKKGD-VVTHFRDYQLRI-QDNALTRQFR 146 (294)
T ss_dssp GHHHHGGGHHHHEEEEEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEETT-EEEEEEEEEEEE-ECSHHHHHHH
T ss_pred CHHHHHHHHHHhhCCCCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEcCC-CEEEECCCEEec-CccHHHHHHH
Confidence 8999999999999888899998887643221 2111 222222212211 1111222 2333 3444556666
Q ss_pred HHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHH--------------------HHHHHhHHHHHHHHHHHhCCCC--
Q 011501 157 DILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGI--------------------EYGDMQLIAEAYDVLKSVGKLS-- 214 (484)
Q Consensus 157 ~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i--------------------~~~~~~~~~Ea~~l~~~~g~~~-- 214 (484)
.+|+.-+-+ +.+..+.-...+-|++-|.. ......++.|+.+++++.| ++
T Consensus 147 ~~l~~~~~~-------~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G-~~l~ 218 (294)
T 3g17_A 147 DLVQDSQID-------IVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEG-LNFS 218 (294)
T ss_dssp HHTTTSSCE-------EEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred HHHHhCCCc-------eEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcC-CCCC
Confidence 666543322 34445566667778777752 2334568899999999998 65
Q ss_pred HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHH
Q 011501 215 NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIES 286 (484)
Q Consensus 215 ~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~ 286 (484)
++.+.+.+........ ....++..++...+. ..+|.+.. +.++.|+++|+|+|+...
T Consensus 219 ~~~~~~~~~~~~~~~~-~~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~a~~~gv~~P~~~~ 275 (294)
T 3g17_A 219 EQTVDTIMTIYQGYPD-EMGTSMYYDIVHQQP-----LEVEAIQG---------FIYRRAREHNLDTPYLDT 275 (294)
T ss_dssp HHHHHHHHHHHHTSCT-TCCCHHHHHHHTTCC-----CSGGGTHH---------HHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHhhcCC-CCCCcHHHHHHcCCC-----ccHHHhhh---------HHHHHHHHhCCCCChHHH
Confidence 4444444432221111 112233444433221 24555544 578999999999998764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.9e-13 Score=133.33 Aligned_cols=92 Identities=15% Similarity=0.154 Sum_probs=71.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCC---------H-hHHHhhcCCCcE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHD---------P-ESFVHSIQKPRV 72 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s---------~-~e~~~~l~~adv 72 (484)
+|||+|||+|.||..+|..|+ +|++|++|+|++++.+.+.+.+. ....+ . .+.. ..+|+
T Consensus 2 ~mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~-------~~~~~~~~~~~~~~~~~~~~---~~~D~ 70 (307)
T 3ego_A 2 SLKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGI-------RLYKGGEEFRADCSADTSIN---SDFDL 70 (307)
T ss_dssp CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCE-------EEEETTEEEEECCEEESSCC---SCCSE
T ss_pred CCEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCc-------eEecCCCeeccccccccccc---CCCCE
Confidence 469999999999999999999 99999999999988888876532 21110 0 1222 34999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
||++||.. +++++++.+.+. .++. ||...|+..
T Consensus 71 vilavK~~-~~~~~l~~l~~~-~~~~-ivs~~nGi~ 103 (307)
T 3ego_A 71 LVVTVKQH-QLQSVFSSLERI-GKTN-ILFLQNGMG 103 (307)
T ss_dssp EEECCCGG-GHHHHHHHTTSS-CCCE-EEECCSSSH
T ss_pred EEEEeCHH-HHHHHHHHhhcC-CCCe-EEEecCCcc
Confidence 99999986 789999888774 4555 888888863
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2e-14 Score=143.04 Aligned_cols=135 Identities=14% Similarity=0.180 Sum_probs=103.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+|.||..++.+|++. |+ +|.+|||++++.+++.+.... .+..+.+++++++. +|+|++|+|..
T Consensus 135 ~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~----~~~~~~~~~e~v~~---aDiVi~atp~~ 207 (312)
T 2i99_A 135 SEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQG----EVRVCSSVQEAVAG---ADVIITVTLAT 207 (312)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSS----CCEECSSHHHHHTT---CSEEEECCCCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhC----CeEEeCCHHHHHhc---CCEEEEEeCCC
Confidence 36899999999999999999886 76 899999999999988765321 15667899998887 99999999964
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe----ccCCCCH----HhhhcCC-ccccCCCHH
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG----MGVSGGE----EGARYGP-SLMPGGSFE 150 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~----~pv~gg~----~~a~~g~-~i~~gg~~~ 150 (484)
. .++.. +.+++|++|+++++..|.. .++.+.+.++|..|+| +|+..|+ .++..|+ ..|++|+.+
T Consensus 208 ~---~v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~ 280 (312)
T 2i99_A 208 E---PILFG--EWVKPGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKP 280 (312)
T ss_dssp S---CCBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSC
T ss_pred C---cccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCC
Confidence 2 33322 5688999999999888864 6667777788999999 6773443 3344555 667777643
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=125.70 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=101.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||++++.+. .....+++++++. +|+|++++|....+
T Consensus 123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------~~~~~~l~ell~~---aDiV~l~~P~t~~t 187 (290)
T 3gvx_A 123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV------------DVISESPADLFRQ---SDFVLIAIPLTDKT 187 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC------------SEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc------------ccccCChHHHhhc---cCeEEEEeeccccc
Confidence 68999999999999999999999999999999764321 2456799999988 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ .+.++.+++|.++||++++.+.+...+.+.+.+.++......|+..++
T Consensus 188 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp TTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred hhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 7776 677888999999999999999999999999998888887777777664
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=132.77 Aligned_cols=193 Identities=16% Similarity=0.252 Sum_probs=132.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-----------hcC----CCCeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------QEG----NLPLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-----------~~~----~~~~~~~~s~~e~~~~l 67 (484)
..+|||||.|.||..+|..++.+|++|+++|++++.++...+... ... ...+...++.+++..
T Consensus 316 i~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 393 (742)
T 3zwc_A 316 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELST-- 393 (742)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGS--
T ss_pred ccEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhh--
Confidence 468999999999999999999999999999999987654432110 000 003556667666443
Q ss_pred CCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH--c--CCeEEecc-CCCCHHhhhcCC
Q 011501 68 QKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE--L--GLLYLGMG-VSGGEEGARYGP 141 (484)
Q Consensus 68 ~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~--~--g~~~i~~p-v~gg~~~a~~g~ 141 (484)
+|+||.+||....++ +++.++.+.++++.|+...|++.+.+. +++.+.. + |.||+..| ++.-.
T Consensus 394 --aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~--ia~~~~~p~r~ig~HFfnP~~~m~LV------- 462 (742)
T 3zwc_A 394 --VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDD--IASSTDRPQLVIGTHFFSPAHVMRLL------- 462 (742)
T ss_dssp --CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHH--HHTTSSCGGGEEEEECCSSTTTCCEE-------
T ss_pred --CCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHH--HHhhcCCccccccccccCCCCCCceE-------
Confidence 999999999998877 555888888888888776665554332 3333221 1 45555432 11111
Q ss_pred ccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHH
Q 011501 142 SLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQ 219 (484)
Q Consensus 142 ~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~ 219 (484)
=|+.| .++++++.+..+.+.+++.+ +.+.+ ..|. +.|.+. ...+.|++.++.. | .+++++.
T Consensus 463 Evi~g~~Ts~e~~~~~~~~~~~lgK~p-------V~vkd-~pGF----i~NRi~---~~~~~ea~~l~~e-G-~~~~~id 525 (742)
T 3zwc_A 463 EVIPSRYSSPTTIATVMSLSKKIGKIG-------VVVGN-CYGF----VGNRML---APYYNQGFFLLEE-G-SKPEDVD 525 (742)
T ss_dssp EEEECSSCCHHHHHHHHHHHHHTTCEE-------EECCC-STTT----THHHHH---HHHHHHHHHHHHT-T-CCHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHhCCCC-------cccCC-CCCc----cHHHHh---hHHHHHHHHHHHc-C-CCHHHHH
Confidence 13444 38999999999999999753 66654 4554 445543 4556999999876 6 8999999
Q ss_pred HHHHhh
Q 011501 220 QVFSEW 225 (484)
Q Consensus 220 ~~~~~~ 225 (484)
+++..+
T Consensus 526 ~a~~~~ 531 (742)
T 3zwc_A 526 GVLEEF 531 (742)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 887654
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=122.76 Aligned_cols=111 Identities=15% Similarity=0.169 Sum_probs=91.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.|...|++|++|||++++.+.+.+. ++... +++++++. +|+|++++|....+
T Consensus 156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~-------g~~~~-~l~e~l~~---aDvVi~~vp~~~~t 224 (330)
T 2gcg_A 156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF-------QAEFV-STPELAAQ---SDFIVVACSLTPAT 224 (330)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT-------TCEEC-CHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhc-------CceeC-CHHHHHhh---CCEEEEeCCCChHH
Confidence 689999999999999999999999999999988765544321 24444 88888887 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.++ .++.+.+++|.++|++|++.+.+...+.+.+.+.++..
T Consensus 225 ~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~g 267 (330)
T 2gcg_A 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAA 267 (330)
T ss_dssp TTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccE
Confidence 7666 56778899999999999999888888888888765543
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.3e-11 Score=122.43 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=76.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHh-CCCcEEEEe---CChhHHHHHHHHhh------hcCC--C----Cee-ecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAE-KGFPISVYN---RTTSKVDETVERAK------QEGN--L----PLY-GFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~-~G~~V~v~d---r~~~~~~~~~~~~~------~~~~--~----~~~-~~~s~~e~~~ 65 (484)
+|||+|||+|.||..+|..|++ +|++|++|+ |++++++.+.+... ..++ . .+. .++++++++.
T Consensus 2 ~mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 81 (404)
T 3c7a_A 2 TVKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS 81 (404)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence 3699999999999999999998 599999999 88777776443221 0000 0 122 5567877777
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
. +|+||++||+. ..+++++++.+.+.++++|++..+
T Consensus 82 ~---aD~Vilav~~~-~~~~v~~~l~~~l~~~~ivv~~~~ 117 (404)
T 3c7a_A 82 G---ADVVILTVPAF-AHEGYFQAMAPYVQDSALIVGLPS 117 (404)
T ss_dssp T---CSEEEECSCGG-GHHHHHHHHTTTCCTTCEEEETTC
T ss_pred C---CCEEEEeCchH-HHHHHHHHHHhhCCCCcEEEEcCC
Confidence 6 99999999997 689999999999999999998533
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=120.79 Aligned_cols=120 Identities=21% Similarity=0.186 Sum_probs=96.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||..+|+.|...|++|++|||++++ +.....+ +.. .+++++++. +|+|++++|....
T Consensus 150 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~~~l~~---aDvVil~vp~~~~ 217 (334)
T 2dbq_A 150 GKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELN-------AEF-KPLEDLLRE---SDFVVLAVPLTRE 217 (334)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC-------CEE-CCHHHHHHH---CSEEEECCCCCTT
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC-------ccc-CCHHHHHhh---CCEEEECCCCChH
Confidence 368999999999999999999999999999999876 4333221 333 488888887 9999999999876
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
++.++ .++.+.++++.++|++|++.+.+...+.+.+.+..+.....-+++.+
T Consensus 218 t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~E 270 (334)
T 2dbq_A 218 TYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEE 270 (334)
T ss_dssp TTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSS
T ss_pred HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCC
Confidence 77777 46778899999999999999888888888888766655444455433
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-11 Score=121.91 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=97.6
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|||||+|.||..+|+.+. ..|++|++|||++++.+...+.+ +..+.+++++++. +|+|++++|....
T Consensus 164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvVil~vp~~~~ 233 (348)
T 2w2k_A 164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALG-------AERVDSLEELARR---SDCVSVSVPYMKL 233 (348)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCSGG
T ss_pred CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcC-------cEEeCCHHHHhcc---CCEEEEeCCCChH
Confidence 58999999999999999999 99999999999987655443322 4455688898887 9999999999877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
++.++ .++.+.+++|.+|||++++.+.+...+.+.+.+..+......+++.+
T Consensus 234 t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~E 286 (348)
T 2w2k_A 234 THHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFE 286 (348)
T ss_dssp GTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTT
T ss_pred HHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCC
Confidence 77776 46777899999999999999888888888887755544445565544
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=123.73 Aligned_cols=121 Identities=16% Similarity=0.092 Sum_probs=100.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|.+|||++...+.+.+.+ +..+.+++++++. +|+|++++|....+
T Consensus 165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 234 (351)
T 3jtm_A 165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETG-------AKFVEDLNEMLPK---CDVIVINMPLTEKT 234 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHC-------CEECSCHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCC-------CeEcCCHHHHHhc---CCEEEECCCCCHHH
Confidence 6899999999999999999999999999999875554444332 4566799999988 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.+..+++|.++||++++.+.+...+.+.+.+..+......|+..+
T Consensus 235 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 286 (351)
T 3jtm_A 235 RGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQ 286 (351)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred HHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCC
Confidence 7776 67778899999999999999999999999998876654444555443
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-12 Score=124.45 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=110.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|||||||+|.||..++.+|.+.|++| .+||+++ +.+ ..+.+++++++ ..+|+|++|+|+..+
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~--------------~~~~~~~~l~~--~~~DvVv~~~~~~~~ 63 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHE--------------KMVRGIDEFLQ--REMDVAVEAASQQAV 63 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCT--------------TEESSHHHHTT--SCCSEEEECSCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chh--------------hhcCCHHHHhc--CCCCEEEECCCHHHH
Confidence 48999999999999999999999997 7999985 211 13678888883 239999999998643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHH---HHHHHHHHHcCCe-EEeccCCCCHHhhhcCCccccCCCHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENT---ERRQKAVAELGLL-YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~---~~~~~~l~~~g~~-~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~l 158 (484)
.+++ ...++.|..|++.++..+... +++.+..+++|.. ++++|++|+...+..+.. +++...++..++.
T Consensus 64 -~~~~---~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~ 136 (236)
T 2dc1_A 64 -KDYA---EKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE---LIEEIVLTTRKNW 136 (236)
T ss_dssp -HHHH---HHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG---GEEEEEEEEEEEG
T ss_pred -HHHH---HHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc---cccEEEEEEEcCh
Confidence 3333 334567899999988764433 6677777777877 789999999876665542 4443333333444
Q ss_pred HHHHhccCCCCCCceEEeCCchhH-HHHHHHHHHHH
Q 011501 159 LLKVAAQVPDSGPCVTYVGKGGSG-NFVKMIHNGIE 193 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G~~g~g-~~~K~v~N~i~ 193 (484)
++..+ ++++|.|+.+.+ ...|...|.+.
T Consensus 137 ~~~~~-------~~~~~~G~~~~~~~~~~~~~n~~~ 165 (236)
T 2dc1_A 137 RQFGR-------KGVIFEGSASEAAQKFPKNLNVAA 165 (236)
T ss_dssp GGTTS-------CEEEEEEEHHHHHHHSTTCCHHHH
T ss_pred HHcCc-------ceEEEeccHHHHHHHCCchHHHHH
Confidence 33333 456888875433 46676666554
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-11 Score=119.92 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=76.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+++...|++|.+|||++++. . ......+++++++. +|+|++++|...++
T Consensus 172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~-------~~~~~~sl~ell~~---aDvVil~vP~t~~t 236 (340)
T 4dgs_A 172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----V-------DWIAHQSPVDLARD---SDVLAVCVAASAAT 236 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----S-------CCEECSSHHHHHHT---CSEEEECC------
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----c-------CceecCCHHHHHhc---CCEEEEeCCCCHHH
Confidence 689999999999999999999999999999997641 0 23456799999988 99999999988788
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ ++.++.+++|.++||++++.+.+...+.+.+++..+......|+..+
T Consensus 237 ~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp ----CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSS
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 8888 67788899999999999999999999999988776655544555443
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=122.11 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=98.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|.+|||++.. +..... ++..+.++++++++ +|+|++++|....+
T Consensus 161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~-------g~~~~~~l~ell~~---aDiV~l~~Plt~~t 229 (352)
T 3gg9_A 161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK-ERARAD-------GFAVAESKDALFEQ---SDVLSVHLRLNDET 229 (352)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH-HHHHHT-------TCEECSSHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH-HHHHhc-------CceEeCCHHHHHhh---CCEEEEeccCcHHH
Confidence 58999999999999999999999999999998643 333322 25666799999998 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.++.+++|.++||++++.+.+...+.+.+++..+......|+..+
T Consensus 230 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 281 (352)
T 3gg9_A 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETE 281 (352)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSS
T ss_pred HHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCC
Confidence 7666 56778899999999999999999999999999887765554455433
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-11 Score=118.98 Aligned_cols=114 Identities=16% Similarity=0.190 Sum_probs=93.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.|...|++|++|||++++.. + .....++++++++ +|+|++++|....+
T Consensus 165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g-------~~~~~~l~ell~~---aDvVil~vP~~~~t 229 (333)
T 3ba1_A 165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----N-------YTYYGSVVELASN---SDILVVACPLTPET 229 (333)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----C-------SEEESCHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----C-------ceecCCHHHHHhc---CCEEEEecCCChHH
Confidence 5899999999999999999999999999999976421 1 3456789998887 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.++ ++..+.+++|.++||++++.+.++..+.+.+.+.++.....-++.
T Consensus 230 ~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~ 279 (333)
T 3ba1_A 230 THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279 (333)
T ss_dssp TTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCT
T ss_pred HHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCC
Confidence 7777 456778899999999999999999999999987655544333333
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.20 E-value=8e-12 Score=124.36 Aligned_cols=120 Identities=16% Similarity=0.145 Sum_probs=98.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||+++..+.+. ......++++++++ +|+|++++|...++
T Consensus 138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~t 205 (324)
T 3evt_A 138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH---------ETVAFTATADALAT---ANFIVNALPLTPTT 205 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS---------EEEEGGGCHHHHHH---CSEEEECCCCCGGG
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHh---------hccccCCHHHHHhh---CCEEEEcCCCchHH
Confidence 5899999999999999999999999999999976532211 12334678899888 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ .+.+..+++|.++||++++.+.+...+.+.+.+..+......|+..++
T Consensus 206 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EP 258 (324)
T 3evt_A 206 HHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEP 258 (324)
T ss_dssp TTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSS
T ss_pred HHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCC
Confidence 7776 567788999999999999999999999999988777666666665543
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.9e-11 Score=120.59 Aligned_cols=117 Identities=15% Similarity=0.183 Sum_probs=95.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++||+++++.. .... ++..+.+++++++. +|+|++++|...++
T Consensus 169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~t 237 (347)
T 1mx3_A 169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 237 (347)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc-------CCeecCCHHHHHhc---CCEEEEcCCCCHHH
Confidence 6899999999999999999999999999999876421 1111 24456689999988 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
+.++ ++.++.+++|.++||++++.+.+...+.+.+.+.++.....-|.
T Consensus 238 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~ 286 (347)
T 1mx3_A 238 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 286 (347)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeec
Confidence 7777 66778899999999999999999999999998876654333333
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-11 Score=120.37 Aligned_cols=120 Identities=12% Similarity=0.099 Sum_probs=98.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||++.+.+.....+ +.. .+++++++. +|+|++++|....+
T Consensus 146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~P~t~~t 214 (330)
T 4e5n_A 146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG-------LRQ-VACSELFAS---SDFILLALPLNADT 214 (330)
T ss_dssp CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC-------cee-CCHHHHHhh---CCEEEEcCCCCHHH
Confidence 6899999999999999999999999999999974444333322 333 489999988 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
..++ .+.+..+++|.++||++++.+.+...+.+.+.+.++.....-|+..+
T Consensus 215 ~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E 266 (330)
T 4e5n_A 215 LHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEME 266 (330)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccc
Confidence 7766 57788899999999999999999999999998887765555555444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=6.7e-11 Score=117.76 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=90.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|||||+|.||..+|++|...|++|++||+ ++++. ...+.+ +....+++++++. +|+|++++|...+
T Consensus 147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g-------~~~~~~l~ell~~---aDvVil~~p~~~~ 215 (320)
T 1gdh_A 147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPE 215 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcC-------cEEcCCHHHHHhh---CCEEEEeccCchH
Confidence 5899999999999999999999999999999 87663 222222 4455589999888 9999999998877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
++.++ +..++.+++|.++||+++..+.+...+.+.+.+.++.
T Consensus 216 t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~ 258 (320)
T 1gdh_A 216 TRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLA 258 (320)
T ss_dssp TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred HHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 77777 5577889999999999999887888888888776544
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=8.3e-12 Score=124.08 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=95.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|++|...|++|++|||++...+.+. ......+++++++. +|+|++++|...++
T Consensus 141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDvV~l~lPlt~~T 208 (324)
T 3hg7_A 141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD---------QVYQLPALNKMLAQ---ADVIVSVLPATRET 208 (324)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS---------EEECGGGHHHHHHT---CSEEEECCCCCSSS
T ss_pred ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhh---------cccccCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 6899999999999999999999999999999874322110 12335688899887 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.+..+++|.++||++++.+.+...+.+.+.+..+......|+..+
T Consensus 209 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 209 HHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp TTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred HHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 7766 45667789999999999999999999999998877655444555444
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-11 Score=119.36 Aligned_cols=120 Identities=16% Similarity=0.206 Sum_probs=98.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|.+|||++...+... + ...+.++++++++ +|+|++++|...++
T Consensus 174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g-------~~~~~~l~ell~~---sDvV~l~~Plt~~T 241 (345)
T 4g2n_A 174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--G-------AIYHDTLDSLLGA---SDIFLIAAPGRPEL 241 (345)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--T-------CEECSSHHHHHHT---CSEEEECSCCCGGG
T ss_pred CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--C-------CeEeCCHHHHHhh---CCEEEEecCCCHHH
Confidence 5899999999999999999999999999999875433211 1 4556799999988 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ .+.+..+++|.++||++.+...+...+.+.+.+..+....-.|+..++
T Consensus 242 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 242 KGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 7777 667788999999999999999999999999987666554555665544
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.16 E-value=6.4e-11 Score=118.58 Aligned_cols=117 Identities=13% Similarity=0.181 Sum_probs=93.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.|...|++|++|||++++ +...+.+ +.. .+++++++. +|+|++++|....+
T Consensus 147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~e~l~~---aDiVil~vp~~~~t 214 (333)
T 2d0i_A 147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-------ARY-MDIDELLEK---SDIVILALPLTRDT 214 (333)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-------EEE-CCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcC-------cee-cCHHHHHhh---CCEEEEcCCCChHH
Confidence 68999999999999999999999999999999876 3332222 343 388888887 99999999998777
Q ss_pred HHHHH-HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 84 DQTIK-TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 84 ~~vl~-~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
+.++. ++.+.+++| ++||+|+..+.+..++.+.+.+..+...+..+++.
T Consensus 215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 264 (333)
T 2d0i_A 215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEK 264 (333)
T ss_dssp TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSS
T ss_pred HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCC
Confidence 77773 567788999 99999999988888888888775555554455543
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-10 Score=115.68 Aligned_cols=109 Identities=19% Similarity=0.181 Sum_probs=90.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.|...|++|++||+++++ +.+.+.+ +.. .+++++++. +|+|++++|....+
T Consensus 143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g-------~~~-~~l~ell~~---aDvV~l~~p~~~~t 210 (307)
T 1wwk_A 143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVN-------GKF-VDLETLLKE---SDVVTIHVPLVEST 210 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCSTTT
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcC-------ccc-cCHHHHHhh---CCEEEEecCCChHH
Confidence 68999999999999999999999999999999876 3333322 333 378898887 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.++.+++|.++||+++..+.+...+.+.+.+..+.
T Consensus 211 ~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 211 YHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSS
T ss_pred hhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 7766 5677889999999999999888888888888876554
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-11 Score=117.73 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=93.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||++++. ...+.+ +.. .+++++++. +|+|++++|...++
T Consensus 143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvVvl~~P~~~~t 210 (313)
T 2ekl_A 143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKIN-------AKA-VSLEELLKN---SDVISLHVTVSKDA 210 (313)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTT-------CEE-CCHHHHHHH---CSEEEECCCCCTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcC-------cee-cCHHHHHhh---CCEEEEeccCChHH
Confidence 689999999999999999999999999999998764 222222 333 488898888 99999999987667
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
+.++ +..++.+++|.++||++++.+.+...+.+.+++.++.-...-+...
T Consensus 211 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~ 261 (313)
T 2ekl_A 211 KPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261 (313)
T ss_dssp CCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSS
T ss_pred HHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCC
Confidence 6666 5667789999999999999988888888888776553333334433
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=9e-11 Score=117.51 Aligned_cols=118 Identities=17% Similarity=0.220 Sum_probs=94.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++|||+++.. .+. .+. ..+++++++. +|+|++++|....+
T Consensus 149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~-------~~~-~~~l~ell~~---aDvV~l~~Plt~~t 214 (343)
T 2yq5_A 149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEP-------FLT-YTDFDTVLKE---ADIVSLHTPLFPST 214 (343)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTT-------TCE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhc-------ccc-ccCHHHHHhc---CCEEEEcCCCCHHH
Confidence 589999999999999999999999999999997641 111 122 3389999988 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
..++ .+.+..+++|.++||++++...+...+.+.+.+..+.....-|+..++
T Consensus 215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 7666 567788999999999999999999999999988766544444444433
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=122.11 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=109.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||..+|++|...|++|++||+++.. +...+.+ +..+ +++++++. +|+|++++|....
T Consensus 142 g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g-------~~~~-~l~e~~~~---aDvV~l~~P~~~~ 209 (529)
T 1ygy_A 142 GKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLG-------IELL-SLDDLLAR---ADFISVHLPKTPE 209 (529)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHT-------CEEC-CHHHHHHH---CSEEEECCCCSTT
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcC-------cEEc-CHHHHHhc---CCEEEECCCCchH
Confidence 368999999999999999999999999999998753 3333322 3444 88898888 9999999999877
Q ss_pred HHHHHHH-HhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHh----hhcCC-ccc---cC-CCHHHH
Q 011501 83 VDQTIKT-LSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEG----ARYGP-SLM---PG-GSFEAY 152 (484)
Q Consensus 83 v~~vl~~-l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~----a~~g~-~i~---~g-g~~~~~ 152 (484)
+..++.+ +++.+++|.+|||+++..+.+..++.+.+.+..+......++++++. -...+ .++ .+ -+.++.
T Consensus 210 t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~ 289 (529)
T 1ygy_A 210 TAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ 289 (529)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHH
T ss_pred HHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHH
Confidence 7877754 77889999999999999998888888888765444333334444332 22334 332 24 367766
Q ss_pred HH-----HHHHHHHHhcc
Q 011501 153 KH-----IEDILLKVAAQ 165 (484)
Q Consensus 153 ~~-----v~~ll~~i~~~ 165 (484)
++ ++.+.+.++.+
T Consensus 290 ~~~~~~~~~~l~~~l~~~ 307 (529)
T 1ygy_A 290 DRAGTDVAESVRLALAGE 307 (529)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 65 55666666643
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=122.18 Aligned_cols=119 Identities=18% Similarity=0.250 Sum_probs=95.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||+.+|+.|...|++|++|||+++..+.+. ......+++++++. +|+|++++|...++
T Consensus 140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---------~~~~~~~l~ell~~---aDiV~l~~Plt~~t 207 (315)
T 3pp8_A 140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---------SYVGREELRAFLNQ---TRVLINLLPNTAQT 207 (315)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE---------EEESHHHHHHHHHT---CSEEEECCCCCGGG
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh---------hhcccCCHHHHHhh---CCEEEEecCCchhh
Confidence 6899999999999999999999999999999976432110 01123578888887 99999999988788
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.+..+++|.++||++.+...+...+.+.+.+..+....-.|+..+
T Consensus 208 ~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 259 (315)
T 3pp8_A 208 VGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQE 259 (315)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSS
T ss_pred hhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCC
Confidence 8777 67788899999999999999999999999998876654444555444
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.1e-11 Score=120.25 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=95.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||++.+.+...+.+ +..+.+++++++. +|+|++++|...++
T Consensus 192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G-------~~~~~~l~ell~~---aDvV~l~~Plt~~t 261 (393)
T 2nac_A 192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN-------LTWHATREDMYPV---CDVVTLNCPLHPET 261 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC-------ceecCCHHHHHhc---CCEEEEecCCchHH
Confidence 6899999999999999999999999999999875544333322 4445689998887 99999999987777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.++ ++.++.+++|.++||+++..+.+...+.+.+.+..+.....-|+.
T Consensus 262 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~ 311 (393)
T 2nac_A 262 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF 311 (393)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCS
T ss_pred HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecC
Confidence 7777 567788999999999999998888889888877554433333443
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=116.64 Aligned_cols=109 Identities=12% Similarity=0.077 Sum_probs=91.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++||+++++. .....+ +.. .+++++++. +|+|++++|...++
T Consensus 166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g-------~~~-~~l~ell~~---aDvV~l~~P~t~~t 233 (335)
T 2g76_A 166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFG-------VQQ-LPLEEIWPL---CDFITVHTPLLPST 233 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTT-------CEE-CCHHHHGGG---CSEEEECCCCCTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcC-------cee-CCHHHHHhc---CCEEEEecCCCHHH
Confidence 589999999999999999999999999999987652 222222 333 488888887 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.++.+++|.++||+++..+.+...+.+.+.+..+.
T Consensus 234 ~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~ 275 (335)
T 2g76_A 234 TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCA 275 (335)
T ss_dssp TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7777 5678889999999999999988888888888876543
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1e-10 Score=118.41 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=96.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|||||+|.||..+|++|...|++ |++|||++.+.+...+. ++..+.+++++++. +|+|++++|....
T Consensus 165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~-------g~~~~~~l~ell~~---aDvV~l~~P~t~~ 234 (364)
T 2j6i_A 165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV-------GARRVENIEELVAQ---ADIVTVNAPLHAG 234 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT-------TEEECSSHHHHHHT---CSEEEECCCCSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc-------CcEecCCHHHHHhc---CCEEEECCCCChH
Confidence 6899999999999999999999997 99999987655443332 24556689999887 9999999999877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
++.++ +..++.+++|.++|++++..+.+...+.+.+.+.++....--|+
T Consensus 235 t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf 284 (364)
T 2j6i_A 235 TKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVW 284 (364)
T ss_dssp TTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecC
Confidence 77777 56778899999999999999989999999998876544333344
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.12 E-value=3.3e-10 Score=114.24 Aligned_cols=118 Identities=15% Similarity=0.136 Sum_probs=93.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|.+||+++.. +.....+ +. ..+++++++. +|+|++++|...++
T Consensus 177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g-------~~-~~~l~ell~~---aDvV~l~~Plt~~T 244 (365)
T 4hy3_A 177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-SMLEENG-------VE-PASLEDVLTK---SDFIFVVAAVTSEN 244 (365)
T ss_dssp SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-HHHHHTT-------CE-ECCHHHHHHS---CSEEEECSCSSCC-
T ss_pred CEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-HHHhhcC-------ee-eCCHHHHHhc---CCEEEEcCcCCHHH
Confidence 58999999999999999999999999999998643 3333222 33 3589999988 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.+..+++|.++||++.+..-+...+.+.+++..+. ....|+..+
T Consensus 245 ~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~E 295 (365)
T 4hy3_A 245 KRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEE 295 (365)
T ss_dssp --CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSS
T ss_pred HhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCC
Confidence 8887 6778889999999999999999999999999877665 344455443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-10 Score=117.38 Aligned_cols=147 Identities=14% Similarity=0.077 Sum_probs=101.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhC------CCcEEEEeCChhH-HHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSK-VDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~------G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~adv 72 (484)
++|||||+|.||.++|++|.+. |++|++.+++.++ .+...+.+ +.. ..+++++++. +|+
T Consensus 55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G-------~~v~d~ta~s~aEAa~~---ADV 124 (525)
T 3fr7_A 55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG-------FTEESGTLGDIWETVSG---SDL 124 (525)
T ss_dssp SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT-------CCTTTTCEEEHHHHHHH---CSE
T ss_pred CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC-------CEEecCCCCCHHHHHhc---CCE
Confidence 6899999999999999999999 9999887776443 33333332 332 3578899988 999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHH--HHHHcCCeEEe-ccCCCCHH---hhh-------c
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQK--AVAELGLLYLG-MGVSGGEE---GAR-------Y 139 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~i~-~pv~gg~~---~a~-------~ 139 (484)
||++||+. ...++++++.+.+++|++|+.+..... ..+.+ .....++.++- +|-..+.. ... .
T Consensus 125 VILaVP~~-~~~eVl~eI~p~LK~GaILs~AaGf~I---~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~ 200 (525)
T 3fr7_A 125 VLLLISDA-AQADNYEKIFSHMKPNSILGLSHGFLL---GHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGA 200 (525)
T ss_dssp EEECSCHH-HHHHHHHHHHHHSCTTCEEEESSSHHH---HHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTC
T ss_pred EEECCChH-HHHHHHHHHHHhcCCCCeEEEeCCCCH---HHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccC
Confidence 99999997 456788899999999999877766431 11121 11123455544 57555543 111 3
Q ss_pred CC--ccccCC--CHHHHHHHHHHHHHHhc
Q 011501 140 GP--SLMPGG--SFEAYKHIEDILLKVAA 164 (484)
Q Consensus 140 g~--~i~~gg--~~~~~~~v~~ll~~i~~ 164 (484)
|. .+.+.. +.++.+.+..++..+|.
T Consensus 201 Gv~~liAv~qd~tgea~e~alala~aiG~ 229 (525)
T 3fr7_A 201 GINSSFAVHQDVDGRATDVALGWSVALGS 229 (525)
T ss_dssp SCCEEEEEEECSSSCHHHHHHHHHHHTTC
T ss_pred CccEEEEcCCCCCHHHHHHHHHHHHHCCC
Confidence 44 233333 34788899999999996
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.9e-11 Score=115.58 Aligned_cols=113 Identities=12% Similarity=0.144 Sum_probs=93.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|||||+|.||..+|++|...|++|.+|||+++ +. + .....+++++++. +|+|++++|....
T Consensus 124 g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~-------~~~~~~l~ell~~---aDvV~l~~P~~~~ 187 (303)
T 1qp8_A 124 GEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----P-------WRFTNSLEEALRE---ARAAVCALPLNKH 187 (303)
T ss_dssp TCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----S-------SCCBSCSHHHHTT---CSEEEECCCCSTT
T ss_pred CCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----C-------cccCCCHHHHHhh---CCEEEEeCcCchH
Confidence 36899999999999999999999999999999876 11 1 2335688888887 9999999999877
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
++.++ ++.++.+++|.++||+|+..+.+...+.+.+.+..+.....-|+
T Consensus 188 t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~ 237 (303)
T 1qp8_A 188 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237 (303)
T ss_dssp TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred HHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccC
Confidence 77777 47788899999999999999888888988888766544333444
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=118.55 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=92.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++||+++.... . ......+++++++. +|+|++++|...++
T Consensus 157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~-----~------~~~~~~sl~ell~~---aDvV~lhvPlt~~T 222 (416)
T 3k5p_A 157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY-----G------NVKPAASLDELLKT---SDVVSLHVPSSKST 222 (416)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB-----T------TBEECSSHHHHHHH---CSEEEECCCC----
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc-----c------CcEecCCHHHHHhh---CCEEEEeCCCCHHH
Confidence 5899999999999999999999999999999854210 0 13456799999998 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ .+.+..+++|.++||+|++.+.+...+.+.+++..+......|+..+
T Consensus 223 ~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 223 SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp -CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 7777 56778899999999999999999999999998766554444555443
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.4e-10 Score=117.13 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=96.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
++|||||+|.||..+|++|...|++|.+||++.+... . .....+++++++. +|+|++++|....
T Consensus 120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~-------~~~~~sl~ell~~---aDiV~l~~Plt~~g 184 (381)
T 3oet_A 120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----D-------EGDFRTLDELVQE---ADVLTFHTPLYKDG 184 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----C-------CSCBCCHHHHHHH---CSEEEECCCCCCSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----c-------CcccCCHHHHHhh---CCEEEEcCcCCccc
Confidence 5899999999999999999999999999998543211 1 1235689999988 9999999998766
Q ss_pred ---HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 83 ---VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 83 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+..++ .+.+..+++|.++||++.+.+.+...+.+.+++.++......|+..++
T Consensus 185 ~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP 241 (381)
T 3oet_A 185 PYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP 241 (381)
T ss_dssp TTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTT
T ss_pred cccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCC
Confidence 66666 567778999999999999999999999999988877776667776553
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=3.9e-10 Score=112.89 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=95.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++||+++++. + ... +....+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~~~~~l~ell~~---aDvV~l~~p~~~~t 213 (333)
T 1j4a_A 147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 213 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-------CeecCCHHHHHhh---CCEEEEcCCCcHHH
Confidence 589999999999999999999999999999998764 2 221 2334588999888 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ +..++.+++|.++|++++..+.+...+.+.+++.++....--|+-.+
T Consensus 214 ~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 265 (333)
T 1j4a_A 214 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 265 (333)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred HHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCC
Confidence 7766 45677899999999999999999999999998876654444444443
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=117.45 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=90.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++|||++... .+ .+....+++++++. +|+|++++|...++
T Consensus 146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~------~~~~~~~l~ell~~---aDvV~l~~P~t~~t 211 (404)
T 1sc6_A 146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP-----LG------NATQVQHLSDLLNM---SDVVSLHVPENPST 211 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC-----CT------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc-----cC------CceecCCHHHHHhc---CCEEEEccCCChHH
Confidence 589999999999999999999999999999986431 11 24556789999988 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.+..+++|.++||+|++.+.+...+.+.+++..+.
T Consensus 212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 253 (404)
T 1sc6_A 212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLA 253 (404)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEE
T ss_pred HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCcc
Confidence 8777 5677889999999999999999999999988775443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.5e-10 Score=113.14 Aligned_cols=103 Identities=17% Similarity=0.248 Sum_probs=87.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|++|...|++|++|||++++.. . ...+++++++. +|+|++++|....+
T Consensus 145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~--------~~~~l~ell~~---aDvV~l~~p~~~~t 207 (311)
T 2cuk_A 145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y--------PFLSLEELLKE---ADVVSLHTPLTPET 207 (311)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S--------CBCCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c--------ccCCHHHHHhh---CCEEEEeCCCChHH
Confidence 5899999999999999999999999999999976532 1 14578898888 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
..++ ++.++.+++|.++||+++..+.+...+.+.++ ..+.
T Consensus 208 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ 248 (311)
T 2cuk_A 208 HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLF 248 (311)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSS
T ss_pred HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCC
Confidence 7777 36677899999999999998888888888887 5554
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=9.6e-10 Score=95.72 Aligned_cols=104 Identities=19% Similarity=0.224 Sum_probs=83.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|+|||+ |.||..++++|.+.||+|+.+|++.+.+ . ++..+.|++|+.+. +|++++++|
T Consensus 14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~-------G~~~~~s~~el~~~---vDlvii~vp 78 (138)
T 1y81_A 14 FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----E-------GLKCYRSVRELPKD---VDVIVFVVP 78 (138)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----T-------TEECBSSGGGSCTT---CCEEEECSC
T ss_pred CCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----C-------CeeecCCHHHhCCC---CCEEEEEeC
Confidence 468999999 9999999999999999877776664322 1 36778899998876 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+ +.+.++++++.. ...+.+|++.++. .+++.+.+++.|+.+++
T Consensus 79 ~-~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 79 P-KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp H-HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCCCEEEc
Confidence 6 588888888776 4456788888775 36677777888999997
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.7e-10 Score=113.01 Aligned_cols=116 Identities=14% Similarity=0.182 Sum_probs=93.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP- 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~- 82 (484)
++|||||+|.||..+|++|...|++|.+||++++.. ..+ . ...+++++++. +|+|++++|...+
T Consensus 117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g-------~-~~~~l~ell~~---aDvV~l~~Plt~~g 181 (380)
T 2o4c_A 117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPD-------G-EFVSLERLLAE---ADVISLHTPLNRDG 181 (380)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STT-------S-CCCCHHHHHHH---CSEEEECCCCCSSS
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccC-------c-ccCCHHHHHHh---CCEEEEeccCcccc
Confidence 589999999999999999999999999999876432 111 1 24689999988 9999999998876
Q ss_pred ---HHHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 83 ---VDQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 83 ---v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+..++ ++.++.+++|.++||++++.+.+...+.+.+.+.++....--|+..+
T Consensus 182 ~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~E 237 (380)
T 2o4c_A 182 EHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGE 237 (380)
T ss_dssp SSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred ccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccC
Confidence 66666 56778899999999999999989999999988776655444555443
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-10 Score=111.87 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=96.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++||+++++. + ... +. ..+++++++. +|+|++++|....+
T Consensus 146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~P~~~~t 211 (333)
T 1dxy_A 146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD-------FD-YVSLEDLFKQ---SDVIDLHVPGIEQN 211 (333)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT-------CE-ECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc-------cc-cCCHHHHHhc---CCEEEEcCCCchhH
Confidence 589999999999999999999999999999987643 1 111 22 3488899888 99999999998777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ ++.++.+++|.++||++++.+.+...+.+.+++.++.-..--|+-.++
T Consensus 212 ~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 212 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred HHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 7777 567788999999999999999999999999987766555455665543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.97 E-value=5e-10 Score=111.95 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=95.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+++...|++|++|||++++. + +.. +. ..+++++++. +|+|++++|....+
T Consensus 147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-------~~-~~~l~ell~~---aDvV~~~~p~t~~t 212 (331)
T 1xdw_A 147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY-------CT-QVSLDEVLEK---SDIITIHAPYIKEN 212 (331)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT-------CE-ECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc-------cc-cCCHHHHHhh---CCEEEEecCCchHH
Confidence 589999999999999999999999999999987643 1 111 22 3488898888 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ ++.++.+++|.++||+|++.+.+...+.+.+.+.++....--|+..++
T Consensus 213 ~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 265 (331)
T 1xdw_A 213 GAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEA 265 (331)
T ss_dssp CCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGG
T ss_pred HHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCC
Confidence 7666 567788999999999999999999999999988766555445555443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-09 Score=104.10 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=83.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch--
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP-- 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~-- 82 (484)
+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+... .. ..+++++ +. +|+||+|+|.+..
T Consensus 118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~------~~-~~~~~~~-~~---~Divi~~tp~~~~~~ 186 (263)
T 2d5c_A 118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG------LR-AVPLEKA-RE---ARLLVNATRVGLEDP 186 (263)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT------CE-ECCGGGG-GG---CSEEEECSSTTTTCT
T ss_pred eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc------cc-hhhHhhc-cC---CCEEEEccCCCCCCC
Confidence 7999999999999999999999999999999998888776532 23 4577777 66 9999999998731
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+..++. .+.+++|.+|+|++.. |..+ ++.+.++++|+.+++.
T Consensus 187 ~~~~l~--~~~l~~g~~viD~~~~-p~~t-~l~~~a~~~g~~~v~g 228 (263)
T 2d5c_A 187 SASPLP--AELFPEEGAAVDLVYR-PLWT-RFLREAKAKGLKVQTG 228 (263)
T ss_dssp TCCSSC--GGGSCSSSEEEESCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred CCCCCC--HHHcCCCCEEEEeecC-Cccc-HHHHHHHHCcCEEECc
Confidence 112221 3567889999999887 4444 4666777788877743
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.1e-09 Score=104.82 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=95.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||..+|+.|...|.+|++|||++++.+.+.+.+. ......+++++++. +|+|++++|... +
T Consensus 158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~-----~~~~~~~l~~~l~~---aDvVi~~~p~~~-i 228 (300)
T 2rir_A 158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGL-----VPFHTDELKEHVKD---IDICINTIPSMI-L 228 (300)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-----EEEEGGGHHHHSTT---CSEEEECCSSCC-B
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-----eEEchhhHHHHhhC---CCEEEECCChhh-h
Confidence 68999999999999999999999999999999987665544221 11113466666665 999999999853 2
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc-CCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG-VSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p-v~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
. +.....++++.++||++....... + +.....|+.++++| +.++...+..+. -.++.+.+++..+
T Consensus 229 ~---~~~~~~mk~g~~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~--------l~~~~~~~~l~~~ 294 (300)
T 2rir_A 229 N---QTVLSSMTPKTLILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ--------ILANVLSKLLAEI 294 (300)
T ss_dssp C---HHHHTTSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH--------HHHHHHHHHHHHH
T ss_pred C---HHHHHhCCCCCEEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH--------HHHHHHHHHHHHh
Confidence 2 234567889999999998643322 2 44556799999888 444332332222 1245566777766
Q ss_pred hc
Q 011501 163 AA 164 (484)
Q Consensus 163 ~~ 164 (484)
+.
T Consensus 295 ~~ 296 (300)
T 2rir_A 295 QA 296 (300)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-09 Score=105.65 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=82.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||.+++..|.+.|++|++|||++++.+++.+.. ++....+++++++. +|+||.|+|.+..-
T Consensus 130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---aDiVi~atp~~~~~ 200 (275)
T 2hk9_A 130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF------PLEVVNSPEEVIDK---VQVIVNTTSVGLKD 200 (275)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS------CEEECSCGGGTGGG---CSEEEECSSTTSST
T ss_pred CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc------CCeeehhHHhhhcC---CCEEEEeCCCCCCC
Confidence 5899999999999999999999999999999999887765432 24555577777766 99999999987421
Q ss_pred --HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 84 --DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 84 --~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
...+. .+.++++.+|+|+++ .. .++.+...++|+.+++.
T Consensus 201 ~~~~~i~--~~~l~~g~~viDv~~-~~---t~ll~~a~~~g~~~v~g 241 (275)
T 2hk9_A 201 EDPEIFN--YDLIKKDHVVVDIIY-KE---TKLLKKAKEKGAKLLDG 241 (275)
T ss_dssp TCCCSSC--GGGCCTTSEEEESSS-SC---CHHHHHHHHTTCEEECS
T ss_pred CCCCCCC--HHHcCCCCEEEEcCC-Ch---HHHHHHHHHCcCEEECC
Confidence 11221 345788999999998 32 23445556678877653
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.4e-09 Score=94.00 Aligned_cols=104 Identities=10% Similarity=0.082 Sum_probs=82.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCCh--hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTT--SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~--~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+.+|+|||+ |.||..++++|.+.||+|+.+|++. +.+ . ++..+.|++|+.+. +|+++++
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~-------G~~~~~sl~el~~~---~Dlvii~ 77 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----L-------GQQGYATLADVPEK---VDMVDVF 77 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----T-------TEECCSSTTTCSSC---CSEEECC
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----C-------CeeccCCHHHcCCC---CCEEEEE
Confidence 357999999 8999999999999999977777765 221 1 36777889888765 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+|+ ..+.++++++.. ...+.+|++.++. .+++.+.+++.|+.+++
T Consensus 78 vp~-~~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 78 RNS-EAAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp SCS-THHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred eCH-HHHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 996 588899988776 4456788887765 45677778888999986
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-08 Score=84.35 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=79.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHh-hcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVH-SIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~ 80 (484)
.|+|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+.+..... -+.. ..+.+.+.+ .++.+|+||+++|++
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~---~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 80 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE 80 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcE---EEEcCCCCHHHHHHcCcccCCEEEEeeCCc
Confidence 36899999999999999999999999999999999887776431100 0111 123333322 245699999999886
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.....+..+.+.+.++.+|+..++.. . .+.+.+.|+.++-+|
T Consensus 81 -~~~~~~~~~~~~~~~~~ii~~~~~~~--~----~~~l~~~g~~~v~~p 122 (140)
T 1lss_A 81 -EVNLMSSLLAKSYGINKTIARISEIE--Y----KDVFERLGVDVVVSP 122 (140)
T ss_dssp -HHHHHHHHHHHHTTCCCEEEECSSTT--H----HHHHHHTTCSEEECH
T ss_pred -hHHHHHHHHHHHcCCCEEEEEecCHh--H----HHHHHHcCCCEEECH
Confidence 44444555566677778887665543 2 234556788777666
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-08 Score=97.71 Aligned_cols=114 Identities=14% Similarity=0.174 Sum_probs=85.6
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|+++||||||+|.||.. ++..|.+. ++++. ++|+++++.+.+.+... +..+++++++++. +|+|++|+
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~------~~~~~~~~~ll~~---~D~V~i~t 74 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYR------IMPFDSIESLAKK---CDCIFLHS 74 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHT------CCBCSCHHHHHTT---CSEEEECC
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCCcCCHHHHHhc---CCEEEEeC
Confidence 55679999999999996 88888874 66766 89999999988876542 3448899999885 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEe-cCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIID-GGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|+..+.+.+...+ ..|. ++++ -.+..+.+.+++.+.++++|+.+.-
T Consensus 75 p~~~h~~~~~~al----~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v 122 (308)
T 3uuw_A 75 STETHYEIIKILL----NLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMV 122 (308)
T ss_dssp CGGGHHHHHHHHH----HTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CcHhHHHHHHHHH----HCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9987655544333 3343 5555 3556678888888888888876543
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=89.47 Aligned_cols=90 Identities=21% Similarity=0.334 Sum_probs=72.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||..++..|.+.|++|++|||++++.+.+.+.... .+....+..++++. +|+||.++|.+..+
T Consensus 22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~----~~~~~~~~~~~~~~---~Divi~at~~~~~~ 94 (144)
T 3oj0_A 22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEY----EYVLINDIDSLIKN---NDVIITATSSKTPI 94 (144)
T ss_dssp CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTC----EEEECSCHHHHHHT---CSEEEECSCCSSCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCC----ceEeecCHHHHhcC---CCEEEEeCCCCCcE
Confidence 589999999999999999999999999999999998887765421 23456788888877 99999999987432
Q ss_pred HHHHHHHhhhcCCCCEEEecCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st 105 (484)
+. ...+.+|.+++|.+.
T Consensus 95 ---~~--~~~l~~g~~vid~~~ 111 (144)
T 3oj0_A 95 ---VE--ERSLMPGKLFIDLGN 111 (144)
T ss_dssp ---BC--GGGCCTTCEEEECCS
T ss_pred ---ee--HHHcCCCCEEEEccC
Confidence 11 245778999999876
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.74 E-value=6.2e-08 Score=96.68 Aligned_cols=115 Identities=11% Similarity=0.173 Sum_probs=87.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+... + ..+++++++++. ..+|+|++|+|+
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp~ 77 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELA------IPVAYGSYEELCKD-ETIDIIYIPTYN 77 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTT------CCCCBSSHHHHHHC-TTCSEEEECCCG
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcC------CCceeCCHHHHhcC-CCCCEEEEcCCC
Confidence 46899999999999999999985 66665 78999999888876542 3 467899999873 238999999999
Q ss_pred CchHHHHHHHHhhhcCCC-CEEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKG-DCIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+.+.+...+. .| .++++.- +..+.+++++.+..++.|+.+..+
T Consensus 78 ~~h~~~~~~al~----~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 78 QGHYSAAKLALS----QGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp GGHHHHHHHHHH----TTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHHHHHHHHHHH----CCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 876665544333 33 4677654 566778888888888888766544
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.74 E-value=8e-08 Score=96.77 Aligned_cols=115 Identities=15% Similarity=0.214 Sum_probs=87.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||||||+|.||..++..|.+. +++| .++|+++++.+.+.+.. ++..+++++++++. ..+|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~------g~~~~~~~~~~l~~-~~~D~V~i~tp~~ 77 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY------NCAGDATMEALLAR-EDVEMVIITVPND 77 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH------TCCCCSSHHHHHHC-SSCCEEEECSCTT
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEEeCChH
Confidence 45899999999999999999987 7775 48899999988887654 24568899999853 2389999999998
Q ss_pred chHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+.+.+...+. .|. ++++.- +..+.+.+++.+..+++|+.+.-+
T Consensus 78 ~h~~~~~~al~----~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~ 123 (354)
T 3db2_A 78 KHAEVIEQCAR----SGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCG 123 (354)
T ss_dssp SHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEE
T ss_pred HHHHHHHHHHH----cCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 77665544333 343 566543 556778888888888888765443
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=95.11 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=86.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. ++. +++++++++. ..+|+|++|+|+.
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~------~~~-~~~~~~~l~~-~~~D~V~i~tp~~ 74 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAY------GCE-VRTIDAIEAA-ADIDAVVICTPTD 74 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHT------TCE-ECCHHHHHHC-TTCCEEEECSCGG
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHh------CCC-cCCHHHHhcC-CCCCEEEEeCCch
Confidence 46999999999999999999986 67765 7999999988887654 356 8899999873 2389999999998
Q ss_pred chHHHHHHHHhhhcCCC-CEEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 81 SPVDQTIKTLSVYMEKG-DCIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+.+.+...+ ..| .++++.- +..+.+.+++.+.+++.|+.+..+
T Consensus 75 ~h~~~~~~al----~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 120 (331)
T 4hkt_A 75 THADLIERFA----RAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVG 120 (331)
T ss_dssp GHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred hHHHHHHHHH----HcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEc
Confidence 7666554333 234 3555543 566788888888888888766543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-08 Score=95.13 Aligned_cols=112 Identities=15% Similarity=0.100 Sum_probs=81.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.++|+|||+|.||..+|+.|...|.+|++|||++++.+.+.+.+ ... ..+++++++. +|+|++++|..
T Consensus 155 g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g-------~~~~~~~~l~~~l~~---aDvVi~~~p~~ 224 (293)
T 3d4o_A 155 GANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMG-------MEPFHISKAAQELRD---VDVCINTIPAL 224 (293)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT-------SEEEEGGGHHHHTTT---CSEEEECCSSC
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC-------CeecChhhHHHHhcC---CCEEEECCChH
Confidence 36899999999999999999999999999999998766554322 222 2456666665 99999999975
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
..-+ .....++++.++||++....... + +.....|+.++.+|-.
T Consensus 225 ~i~~----~~l~~mk~~~~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~l 268 (293)
T 3d4o_A 225 VVTA----NVLAEMPSHTFVIDLASKPGGTD--F-RYAEKRGIKALLVPGL 268 (293)
T ss_dssp CBCH----HHHHHSCTTCEEEECSSTTCSBC--H-HHHHHHTCEEEECCCH
T ss_pred HhCH----HHHHhcCCCCEEEEecCCCCCCC--H-HHHHHCCCEEEECCCC
Confidence 3222 33456789999999997543321 2 4445678888877643
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.70 E-value=9.1e-08 Score=95.93 Aligned_cols=118 Identities=14% Similarity=0.104 Sum_probs=86.9
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|+ ++||||||+|.||..++..|.+. +++|. ++|+++++.+.+.+.. +...+++++++++. ..+|+|++|+
T Consensus 1 M~~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~~l~~-~~~D~V~i~t 73 (344)
T 3euw_A 1 MSLTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN------GAEAVASPDEVFAR-DDIDGIVIGS 73 (344)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT------TCEEESSHHHHTTC-SCCCEEEECS
T ss_pred CCCceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEEeC
Confidence 54 46899999999999999999986 66765 8999999988877643 35678999999873 2389999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+..+.+.+...+.. ...++++.- +..+....++.+.+++.|+.+..+
T Consensus 74 p~~~h~~~~~~al~~---gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 122 (344)
T 3euw_A 74 PTSTHVDLITRAVER---GIPALCEKPIDLDIEMVRACKEKIGDGASKVMLG 122 (344)
T ss_dssp CGGGHHHHHHHHHHT---TCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEEC
T ss_pred CchhhHHHHHHHHHc---CCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEec
Confidence 998766655443322 224666654 566778888888888777755443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-07 Score=86.24 Aligned_cols=115 Identities=9% Similarity=0.087 Sum_probs=76.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCee-ec-CCHhHHHhh--cCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLY-GF-HDPESFVHS--IQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~-~s~~e~~~~--l~~advIi~~vp 78 (484)
++|.|+|+|.||..+|+.|.+. |++|+++|+++++.+.+.+.+. .+. .. .+.+.+.+. ++++|+||+++|
T Consensus 40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~-----~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGR-----NVISGDATDPDFWERILDTGHVKLVLLAMP 114 (183)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTC-----CEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCC-----CEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence 5899999999999999999999 9999999999999888765432 111 11 233323222 456999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
++.....++..+. .+.+...|+..++ .+.. .+.+.+.|+.++..|
T Consensus 115 ~~~~~~~~~~~~~-~~~~~~~ii~~~~-~~~~----~~~l~~~G~~~vi~p 159 (183)
T 3c85_A 115 HHQGNQTALEQLQ-RRNYKGQIAAIAE-YPDQ----LEGLLESGVDAAFNI 159 (183)
T ss_dssp SHHHHHHHHHHHH-HTTCCSEEEEEES-SHHH----HHHHHHHTCSEEEEH
T ss_pred ChHHHHHHHHHHH-HHCCCCEEEEEEC-CHHH----HHHHHHcCCCEEEch
Confidence 8755444444333 3444444444333 2332 234556688887776
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=9.7e-08 Score=94.43 Aligned_cols=98 Identities=15% Similarity=0.089 Sum_probs=70.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhc---CCCCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQE---GNLPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~---~~~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||.++|..|+++| ++|.+||+++++++.+....... ....+.. ..++ +.++. +|+||+++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~---aDvViiav 77 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALAD---ADVVISTL 77 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCC---CCEEEEec
Confidence 69999999999999999999999 79999999998887765432100 0001233 3455 44444 99999999
Q ss_pred CCCch-------------------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGSP-------------------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~~-------------------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
|.+.. ++++++.+.++. ++.+||..+|.
T Consensus 78 ~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp 124 (309)
T 1hyh_A 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESG-FHGVLVVISNP 124 (309)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTT-CCSEEEECSSS
T ss_pred CCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence 98653 467777777765 56677777664
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.2e-07 Score=95.43 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=87.1
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQ-NLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~-~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.++||||||+|.||. .++..|.+. +++|. ++|+++++.+.+.+.. ++..+.+++++++. ...|+|++|+
T Consensus 25 m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~~ll~~-~~~D~V~i~t 97 (350)
T 3rc1_A 25 ANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF------GGEPVEGYPALLER-DDVDAVYVPL 97 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH------CSEEEESHHHHHTC-TTCSEEEECC
T ss_pred CCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc------CCCCcCCHHHHhcC-CCCCEEEECC
Confidence 4456899999999998 799999887 67764 8899999988887654 25567899999864 3489999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+..+.+.+...+. .|. ++++.- +..+.+++++.+..++.|+.+..+
T Consensus 98 p~~~h~~~~~~al~----aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~ 146 (350)
T 3rc1_A 98 PAVLHAEWIDRALR----AGKHVLAEKPLTTDRPQAERLFAVARERGLLLMEN 146 (350)
T ss_dssp CGGGHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHHH----CCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 99877665544332 343 566543 556788888888888888766543
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.2e-07 Score=95.48 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||..++..|.+. ++++ .++|+++++.+.+.+.. ++..+++++++++. ..+|+|++|+|+
T Consensus 13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp~ 85 (354)
T 3q2i_A 13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERT------GARGHASLTDMLAQ-TDADIVILTTPS 85 (354)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHH------CCEEESCHHHHHHH-CCCSEEEECSCG
T ss_pred cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHc------CCceeCCHHHHhcC-CCCCEEEECCCc
Confidence 35899999999999999999987 6775 48999999988887654 36788999999873 238999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..+.+.+...+ ..|. ++++.- +..+.+..++.+..++.|+.+.-
T Consensus 86 ~~h~~~~~~al----~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v 131 (354)
T 3q2i_A 86 GLHPTQSIECS----EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFV 131 (354)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHH----HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEE
Confidence 86655544333 3444 455432 45567888888888888876643
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.2e-09 Score=103.47 Aligned_cols=119 Identities=13% Similarity=0.119 Sum_probs=89.2
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||..++..|.. ...+|.+|||++++.+++.+......+..+..+.+++++++. +|+|++|+|.+.
T Consensus 130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~---aDiVi~aTps~~ 206 (350)
T 1x7d_A 130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADKA 206 (350)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCSS
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhc---CCEEEEeccCCC
Confidence 589999999999999998764 346899999999999998876421000124567889998887 999999999862
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++. ...+++|..|++.++..|. .+++...+..++..|+|..
T Consensus 207 -~~pvl~--~~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~~ 250 (350)
T 1x7d_A 207 -YATIIT--PDMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEYE 250 (350)
T ss_dssp -EEEEEC--GGGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESSH
T ss_pred -CCceec--HHHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECCH
Confidence 112221 2467899999999998876 5555566666777899873
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=94.36 Aligned_cols=116 Identities=12% Similarity=0.194 Sum_probs=86.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||||||+|.||..++..|.+. ++++. ++|+++++.+.+.+.... ...+++++++++. ..+|+|++|+|+.
T Consensus 2 ~~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~-~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 2 SLRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGV-----EKAYKDPHELIED-PNVDAVLVCSSTN 75 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEEEECSCGG
T ss_pred eeEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCC-----CceeCCHHHHhcC-CCCCEEEEcCCCc
Confidence 46999999999999999999885 56655 789999998888765421 2468899999883 2389999999998
Q ss_pred chHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+.+.+...+ ..|. ++++.- +..+.+..++.+..++.|+.+.-+
T Consensus 76 ~h~~~~~~al----~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 121 (344)
T 3ezy_A 76 THSELVIACA----KAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTG 121 (344)
T ss_dssp GHHHHHHHHH----HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred chHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEe
Confidence 6655544333 3343 666643 566788888888888888765443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.5e-07 Score=80.13 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=75.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 80 (484)
+++|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+.+.. -+....+..+.++. ++++|+||+++|+.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~----~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFD----AVIADPTDESFYRSLDLEGVSAVLITGSDD 81 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCE----EEECCTTCHHHHHHSCCTTCSEEEECCSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCc----EEECCCCCHHHHHhCCcccCCEEEEecCCH
Confidence 4689999999999999999999999999999999998887764321 01122222333332 34699999999965
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.....+-..+..+....+|.-..+.. . .+.+.+.|+..+-.|
T Consensus 82 -~~n~~~~~~a~~~~~~~iia~~~~~~--~----~~~l~~~G~~~vi~p 123 (141)
T 3llv_A 82 -EFNLKILKALRSVSDVYAIVRVSSPK--K----KEEFEEAGANLVVLV 123 (141)
T ss_dssp -HHHHHHHHHHHHHCCCCEEEEESCGG--G----HHHHHHTTCSEEEEH
T ss_pred -HHHHHHHHHHHHhCCceEEEEEcChh--H----HHHHHHcCCCEEECH
Confidence 33333333333344556666554432 2 234456677665554
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=94.33 Aligned_cols=116 Identities=12% Similarity=0.235 Sum_probs=85.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|+++||||||+|.||..++..|. + .+++|. ++|+++++.+.+.+.... ....+++++++++. ...|+|++|+
T Consensus 21 m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~t 95 (357)
T 3ec7_A 21 GMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAI----EAKDYNDYHDLIND-KDVEVVIITA 95 (357)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTC----CCEEESSHHHHHHC-TTCCEEEECS
T ss_pred CCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEEcC
Confidence 55568999999999999999998 4 367755 799999998888765420 14678899999874 3489999999
Q ss_pred CCCchHHHHHHHHhhhcCCC-CEEEecC-CCChHHHHHHHHHHHHcCCeE
Q 011501 78 KAGSPVDQTIKTLSVYMEKG-DCIIDGG-NEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~ 125 (484)
|+..+.+.+...+. .| .++++.- +..+.+++++.+..++.|+.+
T Consensus 96 p~~~h~~~~~~al~----aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 96 SNEAHADVAVAALN----ANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp CGGGHHHHHHHHHH----TTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred CcHHHHHHHHHHHH----CCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 99876665544333 34 4555533 556678888888888888754
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.64 E-value=2e-07 Score=92.48 Aligned_cols=113 Identities=18% Similarity=0.171 Sum_probs=82.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+++|||||+|.||.. ++..|.+. ++++. ++|+++++.+.+.+... +..+++.+++.. .+|+|++++|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g------~~~~~~~~~l~~---~~D~V~i~tp~ 75 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWR------IPYADSLSSLAA---SCDAVFVHSST 75 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHT------CCBCSSHHHHHT---TCSEEEECSCT
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC------CCccCcHHHhhc---CCCEEEEeCCc
Confidence 468999999999997 88888764 67765 89999999888776542 345678877733 49999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+.+.+... ++.|. ++++. .+..+.+.+++.+.+++.|+.+..+
T Consensus 76 ~~h~~~~~~a----l~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 122 (319)
T 1tlt_A 76 ASHFDVVSTL----LNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVG 122 (319)
T ss_dssp THHHHHHHHH----HHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHHHHHH----HHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 8655544333 33555 66663 4556778888888888888766543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-07 Score=80.54 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=75.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|.|+|+|.+|..+|..|.+.|++|+++|+++++++.+.+.+... +....+..+... .++++|.||+++|++.
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~----i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRA----VLGNAANEEIMQLAHLECAKWLILTIPNGY 83 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEE----EESCTTSHHHHHHTTGGGCSEEEECCSCHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCE----EECCCCCHHHHHhcCcccCCEEEEECCChH
Confidence 4799999999999999999999999999999999998887643210 112222333333 2345999999999874
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
....++..+ ..+.++..||-..+. +. ..+.+.+.|+..+-.|
T Consensus 84 ~n~~~~~~a-~~~~~~~~iiar~~~-~~----~~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 84 EAGEIVASA-RAKNPDIEIIARAHY-DD----EVAYITERGANQVVMG 125 (140)
T ss_dssp HHHHHHHHH-HHHCSSSEEEEEESS-HH----HHHHHHHTTCSEEEEH
T ss_pred HHHHHHHHH-HHHCCCCeEEEEECC-HH----HHHHHHHCCCCEEECc
Confidence 444344333 334344444433332 22 2345566788766555
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=93.71 Aligned_cols=118 Identities=15% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|.|||+|.||.+++..|++.|. +|+++||++++.+++.+......+ .+....++.+.+.. +|+||.|+|.+.
T Consensus 141 ~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~-~~~~~~~~~~~~~~---aDivIn~t~~~~ 216 (297)
T 2egg_A 141 GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS-AYFSLAEAETRLAE---YDIIINTTSVGM 216 (297)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC-CEECHHHHHHTGGG---CSEEEECSCTTC
T ss_pred CCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC-ceeeHHHHHhhhcc---CCEEEECCCCCC
Confidence 3589999999999999999999998 999999999998888765321000 01111233343444 999999999874
Q ss_pred hH--HHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PV--DQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v--~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.. +.+ +. ...++++.+++|++.. |..| ++.+..+++|..+++.
T Consensus 217 ~~~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~v~G 262 (297)
T 2egg_A 217 HPRVEVQPLS--LERLRPGVIVSDIIYN-PLET-KWLKEAKARGARVQNG 262 (297)
T ss_dssp SSCCSCCSSC--CTTCCTTCEEEECCCS-SSSC-HHHHHHHHTTCEEECS
T ss_pred CCCCCCCCCC--HHHcCCCCEEEEcCCC-CCCC-HHHHHHHHCcCEEECC
Confidence 21 100 10 1346789999999985 5555 3667778888877654
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.7e-07 Score=93.02 Aligned_cols=102 Identities=14% Similarity=0.208 Sum_probs=72.1
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHH----hhhc-CCCCeeecCCHhHHHhhcCCCcEE
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKQE-GNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~----~~~~-~~~~~~~~~s~~e~~~~l~~advI 73 (484)
|. .+||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... .... ...++..+++. +.++. +|+|
T Consensus 1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~---aDiV 76 (317)
T 2ewd_A 1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISG---SDVV 76 (317)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEE
Confidence 54 3689999999999999999999998 999999999877653211 0000 01135555666 44554 9999
Q ss_pred EEecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|++++.+. ..+++++.+.++. ++.+++..||..
T Consensus 77 i~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~sNp~ 124 (317)
T 2ewd_A 77 IITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICITNPL 124 (317)
T ss_dssp EECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred EEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeCChH
Confidence 99994321 2456667777775 588898888854
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-07 Score=95.20 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=95.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+||+.+... ....+ + ...++++++++ +|+|++++|-...+
T Consensus 142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~-------~-~~~~l~ell~~---sDivslh~Plt~~T 208 (334)
T 3kb6_A 142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKG-------C-VYTSLDELLKE---SDVISLHVPYTKET 208 (334)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTT-------C-EECCHHHHHHH---CSEEEECCCCCTTT
T ss_pred cEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcC-------c-eecCHHHHHhh---CCEEEEcCCCChhh
Confidence 579999999999999999999999999999876532 22211 2 34689999998 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ .+.+..+++|.++|+++.+..-+...+.+.+++..+.....-|+-.|+
T Consensus 209 ~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP 261 (334)
T 3kb6_A 209 HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE 261 (334)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence 8777 566778999999999999998889899998887655544445665554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.60 E-value=7.1e-08 Score=101.49 Aligned_cols=117 Identities=9% Similarity=0.193 Sum_probs=87.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELT---RIWKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~---~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
.++++++|++||+++++.|+.++|++.+++++ .++|..++. ..|+.| .++|++++.....+.+++......
T Consensus 183 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----lGl~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 256 (497)
T 2p4q_A 183 AGAGHYVKMVHNGIEYGDMQLICEAYDIMKRL-----GGFTDKEISDVFAKWNNG-VLDSFLVEITRDILKFDDVDGKPL 256 (497)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCHHHHHHHHHHHHTT-TTCBHHHHHHHHHHTCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHhcCC-ccccHHHHHHHHHHhcCCCCCccH
Confidence 47999999999999999999999999998862 237766555 558888 579999998777665532212234
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
++...+...+|+++ +|++..|.++|+|+|.+..+++ +++.++.+|.
T Consensus 257 vd~i~D~~~~KgtG--~~~~~~A~~~Gv~~P~~~~av~ar~~s~~k~~r~ 304 (497)
T 2p4q_A 257 VEKIMDTAGQKGTG--KWTAINALDLGMPVTLIGEAVFARCLSALKNERI 304 (497)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHhhccchHH--HHHHHHHHHcCCCCchHHHHHHHHHhhcchhhHH
Confidence 44444334456666 9999999999999999999985 6666665554
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.5e-07 Score=92.41 Aligned_cols=116 Identities=16% Similarity=0.198 Sum_probs=86.6
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MVQTRIGLAGLAVMGQ-NLALNIAEKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|.++||||||+|.+|. .++..|...+++| .++|+++++.+.+.+... ....+++++++++. ...|+|++|+|
T Consensus 2 M~~~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp 75 (336)
T 2p2s_A 2 MKKIRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFP-----SVPFAASAEQLITD-ASIDLIACAVI 75 (336)
T ss_dssp --CCEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHST-----TCCBCSCHHHHHTC-TTCCEEEECSC
T ss_pred CCccEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcC-----CCcccCCHHHHhhC-CCCCEEEEeCC
Confidence 6678999999999996 6888887778885 689999999888876542 24568899999873 23899999999
Q ss_pred CCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 79 AGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+..+.+.++..+ +.|+ ++++. .+..+.+.+++.+..++.|+.+.
T Consensus 76 ~~~h~~~~~~al----~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 121 (336)
T 2p2s_A 76 PCDRAELALRTL----DAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFA 121 (336)
T ss_dssp GGGHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEE
T ss_pred hhhHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 987766555433 3455 66664 45667788888888888887654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-07 Score=76.21 Aligned_cols=104 Identities=12% Similarity=0.080 Sum_probs=72.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+++|.|+|+|.||..++..|.+.| ++|.++||++++.+.+...+. .... ..+.+++.+.++.+|+||.++|.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~-----~~~~~d~~~~~~~~~~~~~~d~vi~~~~~ 79 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGV-----ATKQVDAKDEAGLAKALGGFDAVISAAPF 79 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTC-----EEEECCTTCHHHHHHHTTTCSEEEECSCG
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCC-----cEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 458999999999999999999999 999999999998877663221 1111 22344444445569999999976
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQK 116 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~ 116 (484)
. ....+++.. ...|..++|.++.. ..++++.+
T Consensus 80 ~-~~~~~~~~~---~~~g~~~~~~~~~~-~~~~~~~~ 111 (118)
T 3ic5_A 80 F-LTPIIAKAA---KAAGAHYFDLTEDV-AATNAVRA 111 (118)
T ss_dssp G-GHHHHHHHH---HHTTCEEECCCSCH-HHHHHHHH
T ss_pred h-hhHHHHHHH---HHhCCCEEEecCcH-HHHHHHHH
Confidence 5 344444433 34677888887654 45555444
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.5e-08 Score=95.78 Aligned_cols=114 Identities=11% Similarity=0.111 Sum_probs=86.1
Q ss_pred CeEEEEcccHHHHHHHHHHHh--CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE--KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~--~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||..++..|.+ ...+|.+|||++++.+++.+..... +..+. +.++++++ . +|+|++|+|...
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~-~~~~~-~~~~~e~v-~---aDvVi~aTp~~~ 199 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR-GISAS-VQPAEEAS-R---CDVLVTTTPSRK 199 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT-TCCEE-ECCHHHHT-S---SSEEEECCCCSS
T ss_pred CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhc-CceEE-ECCHHHHh-C---CCEEEEeeCCCC
Confidence 589999999999999999987 3468999999999999988764321 01255 78888888 7 999999999864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ++. ...+++|..|++.++..|. ..++...+..++..|+|.+
T Consensus 200 p---v~~--~~~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~~ 241 (322)
T 1omo_A 200 P---VVK--AEWVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDDL 241 (322)
T ss_dssp C---CBC--GGGCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESCH
T ss_pred c---eec--HHHcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECCH
Confidence 2 221 2468899999999888776 3444444555556788864
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.7e-07 Score=91.50 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=84.6
Q ss_pred CCeEEEEcccHHHHHHHHHHH-h-CCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIA-E-KGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~-~-~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||..++..|. + .++++. ++|+++++.+.+.+.... ....+++++++++. ..+|+|++|+|+
T Consensus 2 ~~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~----~~~~~~~~~~ll~~-~~~D~V~i~tp~ 76 (344)
T 3mz0_A 2 SLRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQL----NATVYPNDDSLLAD-ENVDAVLVTSWG 76 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTC----CCEEESSHHHHHHC-TTCCEEEECSCG
T ss_pred eEEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCC----CCeeeCCHHHHhcC-CCCCEEEECCCc
Confidence 359999999999999999998 5 366755 889999998888765420 14678999999874 348999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeE
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~ 125 (484)
..+.+.+... +..|. ++++.- +..+.+++++.+..++.|..+
T Consensus 77 ~~h~~~~~~a----l~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 77 PAHESSVLKA----IKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp GGHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 8766655433 33444 555543 556778888888888877754
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=4.8e-07 Score=89.85 Aligned_cols=98 Identities=17% Similarity=0.290 Sum_probs=68.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc----CCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE----GNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~----~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++.+....... ....+.. ++. +.++. +|+||+++
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~d~-~~~~~---aDvViiav 75 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-GDY-ADLKG---SDVVIVAA 75 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-CCG-GGGTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-CCH-HHhCC---CCEEEEcc
Confidence 589999999999999999999999 9999999998877654321100 0001222 343 33444 99999999
Q ss_pred CCCch---------------HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGSP---------------VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~~---------------v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|.+.. ++++++.+.++. ++.++|..||..
T Consensus 76 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 97642 456667777764 666777776643
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-07 Score=99.37 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=89.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHcCCCccchhhHHHHHHHHcc-CCCCCCc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---TRIWKGGCIIRAIFLDRIKKAYDR-NPDLANV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iW~~Gcii~s~ll~~i~~~~~~-~~~~~~l 396 (484)
.++++++|++||+++++.++.++|++.+++++ .+++..++ +..|+.| .+.|++++.....+.+ +......
T Consensus 179 ~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~-----~Gl~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~g~~ 252 (474)
T 2iz1_A 179 NGAGHYVKMVHNGIEYGDMQLIAESYDLLKRI-----LGLSNAEIQAIFEEWNEG-ELDSYLIEITKEVLKRKDDEGEGY 252 (474)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHTTCBCSSSSSB
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHhcCC-CccccHHHhhhhHhhcCCCCCChh
Confidence 47899999999999999999999999998862 23666554 4558988 5789999988787653 3222224
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
.++.+.+...+|+++ +|++..|.++|+|+|.+..++. +++.++.+|.
T Consensus 253 ~vd~i~D~~~~k~tG--~~~~~~A~~~gv~~P~~~~av~ar~~s~~k~~r~ 301 (474)
T 2iz1_A 253 IVDKILDKAGNKGTG--KWTSESALDLGVPLPLITESVFARYISTYKDERV 301 (474)
T ss_dssp GGGGBCSCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhhcccchH--HHHHHHHHHcCCCCchHHHHHHHHHhhhhhhhhH
Confidence 555555445556667 9999999999999999999985 6666665554
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.2e-07 Score=88.87 Aligned_cols=99 Identities=13% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHH----hhhc-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKQE-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~----~~~~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
++||+|||+|.||.++|..|+.+|+ +|.+||+++++++..... .... ...+++.+++. +.++. +|+||++
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~VI~a 89 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN---SDVVIIT 89 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC---CCEEEEc
Confidence 3689999999999999999999999 999999999877643211 1000 01146666676 44454 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+. .++++++.+.++. ++.++|..||.
T Consensus 90 vg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP 133 (328)
T 2hjr_A 90 AGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICITNP 133 (328)
T ss_dssp CSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEecCc
Confidence 94432 1455666777765 67777777763
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-07 Score=90.17 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=79.9
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQ-NLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||. .++..|.+. +++|.++|+++++.+++.+... +.. +.+..+++. +.+|+|++|+|+
T Consensus 2 ~~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g------~~~~~~~~~~~l~--~~~D~V~i~tp~ 73 (323)
T 1xea_A 2 SLKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYR------VSATCTDYRDVLQ--YGVDAVMIHAAT 73 (323)
T ss_dssp CEEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTT------CCCCCSSTTGGGG--GCCSEEEECSCG
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcC------CCccccCHHHHhh--cCCCEEEEECCc
Confidence 46999999999998 599998875 6777799999999888776532 222 344444442 249999999998
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+.+.+...+ ..|+ ++++. .+..+.+.+++.+.+++.|+.+..+
T Consensus 74 ~~h~~~~~~al----~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~ 120 (323)
T 1xea_A 74 DVHSTLAAFFL----HLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVG 120 (323)
T ss_dssp GGHHHHHHHHH----HTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred hhHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEe
Confidence 86555443332 3454 66664 4556678888888888888765543
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.53 E-value=5.4e-07 Score=90.97 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=82.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+.||||||+|.||..++..|.+. +++|. ++|+++++.+.+ +. +++..+++++++++. ...|+|++|+|+.
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a-~~------~g~~~~~~~~~ll~~-~~~D~V~i~tp~~ 76 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAA-AQ------KGLKIYESYEAVLAD-EKVDAVLIATPND 76 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHH-HT------TTCCBCSCHHHHHHC-TTCCEEEECSCGG
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHH-Hh------cCCceeCCHHHHhcC-CCCCEEEEcCCcH
Confidence 35899999999999999999886 66764 789999887543 21 136678999999873 2389999999998
Q ss_pred chHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+.+.+...+ ..|+ ++++. -+..+.+++++.+..++.|+.+.
T Consensus 77 ~h~~~~~~al----~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (359)
T 3e18_A 77 SHKELAISAL----EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFM 120 (359)
T ss_dssp GHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 7666554333 3444 55553 24556788888888888887654
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=98.52 E-value=9.2e-07 Score=88.23 Aligned_cols=115 Identities=10% Similarity=0.152 Sum_probs=85.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC---c-EEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF---P-ISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~---~-V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~v 77 (484)
++||||||+|.||..++..|.+.+. + |.++|+++++.+++.+... + ..+++++++++. ...|+|++|+
T Consensus 2 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~------~~~~~~~~~~ll~~-~~vD~V~i~t 74 (334)
T 3ohs_X 2 ALRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHD------IPKAYGSYEELAKD-PNVEVAYVGT 74 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHT------CSCEESSHHHHHHC-TTCCEEEECC
T ss_pred ccEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEECC
Confidence 4699999999999999999987642 3 5688999999988877643 3 468899999874 3489999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+..+.+.+...+ ..|+ ++++. -+..+.+.+++.+..+++|+.+..+
T Consensus 75 p~~~H~~~~~~al----~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~ 123 (334)
T 3ohs_X 75 QHPQHKAAVMLCL----AAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEA 123 (334)
T ss_dssp CGGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcHHHHHHHHHHH----hcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 9987766554433 3444 56653 3456678888888888888766543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.7e-07 Score=89.53 Aligned_cols=115 Identities=10% Similarity=0.205 Sum_probs=82.6
Q ss_pred CCeEEEEcccHHHHHHHHHHH-h-CCCc-EEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIA-E-KGFP-ISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~-~-~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+++|||||+|.||..++..|. + .+++ |.++|+++++.+.+.+.. ++ ..+.+++++++. ..+|+|++|+|
T Consensus 8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~------g~~~~~~~~~~~l~~-~~~D~V~i~tp 80 (346)
T 3cea_A 8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL------GVETTYTNYKDMIDT-ENIDAIFIVAP 80 (346)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT------CCSEEESCHHHHHTT-SCCSEEEECSC
T ss_pred cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh------CCCcccCCHHHHhcC-CCCCEEEEeCC
Confidence 468999999999999999998 5 3676 468999999988776643 23 567899998863 23899999999
Q ss_pred CCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHc-CCeEEec
Q 011501 79 AGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAEL-GLLYLGM 128 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~-g~~~i~~ 128 (484)
+..+.+.+... +..|. ++++. .+..+.+.+++.+..++. |+.+..+
T Consensus 81 ~~~h~~~~~~a----l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~ 129 (346)
T 3cea_A 81 TPFHPEMTIYA----MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSG 129 (346)
T ss_dssp GGGHHHHHHHH----HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECC
T ss_pred hHhHHHHHHHH----HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 98665554433 33455 55553 345566777777777777 7765543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.51 E-value=9.9e-07 Score=87.73 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=84.5
Q ss_pred CeEEEEcccHHHHHH-HHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNL-ALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~l-A~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+||||||+|.||..+ +..|.+.+++|. ++|+++++.+.+.+... + ..+++++++++. ..+|+|++++|+.
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g------~~~~~~~~~~~l~~-~~~D~V~i~tp~~ 73 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENG------IGKSVTSVEELVGD-PDVDAVYVSTTNE 73 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTT------CSCCBSCHHHHHTC-TTCCEEEECSCGG
T ss_pred CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcC------CCcccCCHHHHhcC-CCCCEEEEeCChh
Confidence 489999999999998 888888778764 88999999887776532 3 357889998763 2389999999988
Q ss_pred chHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.+.+.+... +..|+ ++++. .+..+.+.+++.+..+++|+.+..+.
T Consensus 74 ~h~~~~~~a----l~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~ 120 (332)
T 2glx_A 74 LHREQTLAA----IRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNH 120 (332)
T ss_dssp GHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECC
T ss_pred HhHHHHHHH----HHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEee
Confidence 655444332 33565 55653 45567788888888888888766554
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.1e-07 Score=92.77 Aligned_cols=114 Identities=11% Similarity=0.123 Sum_probs=82.1
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||.. ++..|.+. +.+|. ++|+++++.+.+.+... ....+++++++++. ...|+|++|+|+
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 78 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFIS-----DIPVLDNVPAMLNQ-VPLDAVVMAGPP 78 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSC-----SCCEESSHHHHHHH-SCCSEEEECSCH
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcC-----CCcccCCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999985 88998876 66765 88999998877765421 24678899999986 236999999998
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+.+... +..|+ ++++. -+..+.+++++.+..+++|+.+.
T Consensus 79 ~~H~~~~~~a----l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 123 (359)
T 3m2t_A 79 QLHFEMGLLA----MSKGVNVFVEKPPCATLEELETLIDAARRSDVVSG 123 (359)
T ss_dssp HHHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHH----HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 8665544433 33444 55553 24556778888888777776543
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=98.47 E-value=4.1e-07 Score=90.66 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=82.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCC-Cc-EEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKG-FP-ISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G-~~-V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.++||||||+|.||..++..|.+.+ .+ |.++|+++++.+.+.+.. ++ ..+.+++++++. ..+|+|++|+|
T Consensus 4 ~~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~------~~~~~~~~~~~ll~~-~~~D~V~i~tp 76 (329)
T 3evn_A 4 SKVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKY------HLPKAYDKLEDMLAD-ESIDVIYVATI 76 (329)
T ss_dssp -CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CC------CCSCEESCHHHHHTC-TTCCEEEECSC
T ss_pred CceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHc------CCCcccCCHHHHhcC-CCCCEEEECCC
Confidence 3468999999999999999998764 44 458899999887776543 23 367899999873 23899999999
Q ss_pred CCchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEecc
Q 011501 79 AGSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
+..+.+.+...+ ..|+ ++++.- +..+.+.+++.+..++.|+.+..+.
T Consensus 77 ~~~h~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~ 125 (329)
T 3evn_A 77 NQDHYKVAKAAL----LAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQ 125 (329)
T ss_dssp GGGHHHHHHHHH----HTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cHHHHHHHHHHH----HCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 986665544333 3444 555542 4566788888888888887665443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=2.7e-07 Score=96.92 Aligned_cols=117 Identities=9% Similarity=0.147 Sum_probs=85.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHH---HcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRI---WKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~i---W~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
.+.++++|++||+++++.|+.++|++.++++. .+++..++.++ |+.| .+.|++++.....+.+++......
T Consensus 176 ~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~-----~G~~~~~~~~~~~~w~~g-~~~S~l~~~~~~~l~~~d~~~~~~ 249 (482)
T 2pgd_A 176 DGAGHFVKMVHNGIEYGDMQLICEAYHLMKDV-----LGLGHKEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHL 249 (482)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SCCCHHHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBS
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcCHHHHHHHHHHhcCC-CcCchHHHHHhHHhhccCCCCCee
Confidence 47899999999999999999999999998863 13666655444 8888 478888888777665543222344
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
++.+.+...+++++ +|++..|.++|+|+|.+.+++. +.+.++.+|.
T Consensus 250 ld~i~d~~~~k~t~--~~~~~~A~~~Gv~~P~i~~av~~~~~s~~k~~r~ 297 (482)
T 2pgd_A 250 LPKIRDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 297 (482)
T ss_dssp GGGSCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred ecccccccccccHH--HHHHHHHHHcCCCcchHHHHHHHHhhhhhhhHHH
Confidence 44444444445555 9999999999999999987764 4455555443
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.6e-07 Score=90.45 Aligned_cols=134 Identities=14% Similarity=0.144 Sum_probs=92.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++|||||+|.||..++..|.+. +++ |.++|+++++.+.+.+. +..+++++++++. ..+|+|++++|+.
T Consensus 10 ~~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--------~~~~~~~~~~l~~-~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 10 PVRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--------CVIESDWRSVVSA-PEVEAVIIATPPA 80 (315)
T ss_dssp CEEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--------CEEESSTHHHHTC-TTCCEEEEESCGG
T ss_pred cceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--------CcccCCHHHHhhC-CCCCEEEEeCChH
Confidence 46899999999999999999986 566 45899998876554332 3457788998852 2389999999998
Q ss_pred chHHHHHHHHhhhcCCCC-EEEe-cCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHH
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIID-GGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId-~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~l 158 (484)
.+.+.+... ++.|+ ++++ -.+..+....++.+.+++.|+.+..+....- + ..+..++.+
T Consensus 81 ~h~~~~~~a----l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~--------------~-p~~~~~~~~ 141 (315)
T 3c1a_A 81 THAEITLAA----IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLF--------------N-PAWEALKAD 141 (315)
T ss_dssp GHHHHHHHH----HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGG--------------C-HHHHHHHHT
T ss_pred HHHHHHHHH----HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhc--------------C-HHHHHHHHH
Confidence 655444332 33454 6666 3455677888888888888877655432211 1 135667777
Q ss_pred HHHHhc
Q 011501 159 LLKVAA 164 (484)
Q Consensus 159 l~~i~~ 164 (484)
++.+|.
T Consensus 142 i~~lG~ 147 (315)
T 3c1a_A 142 LTSIGP 147 (315)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 776664
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=85.91 Aligned_cols=97 Identities=15% Similarity=0.149 Sum_probs=66.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhh----c-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQ----E-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~----~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||.++|..|+.+ |++|.+||+++++++........ . ...++..++++++ ++. +|+||++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~---aDvViia 76 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TAN---SDIVIIT 76 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCC---CCEEEEe
Confidence 5899999999999999999985 79999999999887754321110 0 0012455567766 454 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|.+. .++++.+.+.++. ++.+|+..||
T Consensus 77 v~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~viv~tN 119 (310)
T 1guz_A 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSN 119 (310)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEcC
Confidence 97642 1234456666664 5666666655
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.9e-07 Score=97.96 Aligned_cols=116 Identities=16% Similarity=0.254 Sum_probs=87.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHH---HHHHcCCCccchhhHHHHHHHHccCCCCCCcc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGEL---TRIWKGGCIIRAIFLDRIKKAYDRNPDLANVL 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i---~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll 397 (484)
.++++++|+++|+++++.|+.++|++.+++++. + +|..++ +..|++| .+.|++++...+.+++.+......
T Consensus 188 ~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~l---G--l~~~~~~~l~~~w~~g-~~~s~l~~~~~~~l~~~d~~~~~~ 261 (480)
T 2zyd_A 188 DGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGL---N--LTNEELAQTFTEWNNG-ELSSYLIDITKDIFTKKDEDGNYL 261 (480)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C--CCHHHHHHHHHHHHHT-TTCBHHHHHHHHHHHCBCTTSSBG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C--CCHHHHHHHHHHhcCC-CcccHHHHHHHHHHhcCCCCCcch
Confidence 479999999999999999999999999988721 3 666554 4568888 578999998888775432212244
Q ss_pred cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCC
Q 011501 398 VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRER 444 (484)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~ 444 (484)
++.+.+...+++++ +|++..|.+.|+|+|.+.+++. +++.++..|
T Consensus 262 v~~i~D~~~~k~tG--~~~~~~A~~~gv~~Pi~~~av~ar~~s~~k~~R 308 (480)
T 2zyd_A 262 VDVILDEAANKGTG--KWTSQSALDLGEPLSLITESVFARYISSLKDQR 308 (480)
T ss_dssp GGGBCCCCCCCSCT--THHHHHHHHHTCCCHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHhcCchHH--HHHHHHHHHcCCCCchHHHHHHHHhhhcchhhh
Confidence 44444444557777 9999999999999999999985 566655544
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.8e-07 Score=91.21 Aligned_cols=114 Identities=13% Similarity=0.179 Sum_probs=81.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.||..++..|.+. ..+|.+|||+ +.+++.++.....+..+..+ ++++++.+ +|+|++|+|...
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~---aDIVi~aT~s~~ 195 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQ---ADIVVTATRSTT 195 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHH---CSEEEECCCCSS
T ss_pred cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhh---CCEEEEccCCCC
Confidence 5799999999999999999863 4589999999 55555543211001134566 99999988 999999999864
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcC-CeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG-LLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g-~~~i~~p 129 (484)
. ++. .+++++|.+|++.++..|.. +++...+-.+. ..|+|..
T Consensus 196 p---vl~--~~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD~~ 238 (313)
T 3hdj_A 196 P---LFA--GQALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVEWR 238 (313)
T ss_dssp C---SSC--GGGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEESCH
T ss_pred c---ccC--HHHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEECCH
Confidence 3 222 35688999999999988754 44444443343 4678843
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.1e-06 Score=85.65 Aligned_cols=99 Identities=11% Similarity=0.160 Sum_probs=71.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----cC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----EG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++........ .. ..+++.++++++.++. +|+||+++
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~---aDiVi~a~ 86 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVTA 86 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCC---CCEEEEcc
Confidence 689999999999999999999998 999999999877663221100 00 1146667888876666 99999998
Q ss_pred --CCCc------------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 --KAGS------------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 --p~~~------------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
|... .++++.+.+.++. ++.++|..||.
T Consensus 87 g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tNP 134 (331)
T 1pzg_A 87 GLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNP 134 (331)
T ss_dssp SCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred CCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEcCc
Confidence 4321 1456667777765 67777777664
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=87.23 Aligned_cols=120 Identities=18% Similarity=0.158 Sum_probs=85.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+++|||||+|.||..++..|.+. ++++ .++|+++++.+.+.+..... .....+.+++++++. ..+|+|++++|+
T Consensus 5 ~~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~--~~~~~~~~~~~ll~~-~~~D~V~i~tp~ 81 (362)
T 1ydw_A 5 TQIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPT 81 (362)
T ss_dssp -CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCG
T ss_pred CceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC--CCCeeeCCHHHHhcC-CCCCEEEEcCCh
Confidence 356999999999999999999875 5555 68999999988877653200 013567899998863 238999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+.+.+.. .+..|+ ++++. .+......+++.+..++.|+.+..+
T Consensus 82 ~~h~~~~~~----al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 82 SLHVEWAIK----AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp GGHHHHHHH----HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred HHHHHHHHH----HHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 865544432 344565 45543 3456677888888888888876644
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=9.2e-07 Score=76.14 Aligned_cols=117 Identities=12% Similarity=0.177 Sum_probs=70.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHh-hcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVH-SIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~ 80 (484)
+++|.|+|+|.+|..++..|.+.|++|.++|+++++.+.+.+.+.. -+.. ..+.+.+.+ .++++|+||.+++.+
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~----~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATH----AVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSE----EEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCE----EEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 4579999999999999999999999999999998877655432210 0111 123333222 134599999999876
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
......+...+..+.+..+|+..++. ... +.+.+.|...+-.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~ii~~~~~~--~~~----~~l~~~g~~~vi~p 124 (144)
T 2hmt_A 82 IQASTLTTLLLKELDIPNIWVKAQNY--YHH----KVLEKIGADRIIHP 124 (144)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCSH--HHH----HHHHHHTCSEEECH
T ss_pred hHHHHHHHHHHHHcCCCeEEEEeCCH--HHH----HHHHHcCCCEEECc
Confidence 33333333334445555555444432 222 23444566554333
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.9e-06 Score=84.99 Aligned_cols=99 Identities=12% Similarity=0.226 Sum_probs=64.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCC--Ceeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNL--PLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++...........+ ..+.. ++. +.++ .+|+||++++
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~-~a~~---~aDvVIi~~~ 76 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGH-SELA---DAQVVILTAG 76 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECG-GGGT---TCSEEEECC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCH-HHhC---CCCEEEEcCC
Confidence 589999999999999999999999 9999999988765433322110000 11222 233 3333 4999999996
Q ss_pred CCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+. .++++++.+.++ .++.+++..||..
T Consensus 77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~tNP~ 119 (304)
T 2v6b_A 77 ANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVTSNPV 119 (304)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHH-CSSSEEEECSSSH
T ss_pred CCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEecCch
Confidence 553 235566777776 4777877776643
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-06 Score=84.50 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=69.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----c-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----E-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ . ...+++.+++. +.++. +|+||++
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~---aD~Vi~a 79 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAG---ADVVIVT 79 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCC---CCEEEEe
Confidence 5699999999999999999999998 999999999877643222110 0 01145555676 44454 9999999
Q ss_pred cCCCc--------------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS--------------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+. .++++.+.+.++. ++.++|..||.
T Consensus 80 ~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tNP 128 (322)
T 1t2d_A 80 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIVVTNP 128 (322)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSS
T ss_pred CCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 83321 2445556676665 67777777663
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-07 Score=78.87 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH-HHhhhcCCCCeee-cCCHhHHHh-hcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV-ERAKQEGNLPLYG-FHDPESFVH-SIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~-~~~~~~~~~~~~~-~~s~~e~~~-~l~~advIi~~vp~~ 80 (484)
++|.|+|+|.+|..++..|.+.|++|+++|+++++.+.+. ..+.. .+.. ..+.+.+.+ .++.+|+||++++++
T Consensus 20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~----~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~ 95 (155)
T 2g1u_A 20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGF----TVVGDAAEFETLKECGMEKADMVFAFTNDD 95 (155)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSE----EEESCTTSHHHHHTTTGGGCSEEEECSSCH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCc----EEEecCCCHHHHHHcCcccCCEEEEEeCCc
Confidence 6899999999999999999999999999999998876554 22110 0111 112322221 134599999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. ....+..+...+.+...++-..+.. ... +.+.+.|+. +-.|
T Consensus 96 ~-~~~~~~~~~~~~~~~~~iv~~~~~~-~~~----~~l~~~G~~-vi~p 137 (155)
T 2g1u_A 96 S-TNFFISMNARYMFNVENVIARVYDP-EKI----KIFEENGIK-TICP 137 (155)
T ss_dssp H-HHHHHHHHHHHTSCCSEEEEECSSG-GGH----HHHHTTTCE-EECH
T ss_pred H-HHHHHHHHHHHHCCCCeEEEEECCH-HHH----HHHHHCCCc-EEcH
Confidence 4 3434444444433444444433332 222 334456766 4433
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1e-07 Score=92.61 Aligned_cols=111 Identities=17% Similarity=0.072 Sum_probs=76.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||+|.||.+++..|++.|. +|+++||++++.+++.... ......++.+.+.. +|+||.++|.+..
T Consensus 118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~------~~~~~~~~~~~~~~---aDiVInaTp~Gm~ 188 (277)
T 3don_A 118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI------NKINLSHAESHLDE---FDIIINTTPAGMN 188 (277)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCC------EEECHHHHHHTGGG---CSEEEECCC----
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhc------ccccHhhHHHHhcC---CCEEEECccCCCC
Confidence 579999999999999999999999 8999999998876654311 11222334444444 9999999998621
Q ss_pred --HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 --VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 --v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
....+ -...++++.+|+|+... |..| .+.+..+++|...++
T Consensus 189 ~~~~~~l--~~~~l~~~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 189 GNTDSVI--SLNRLASHTLVSDIVYN-PYKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp ---CCSS--CCTTCCSSCEEEESCCS-SSSC-HHHHHHHHTTCCEEC
T ss_pred CCCcCCC--CHHHcCCCCEEEEecCC-CCCC-HHHHHHHHCcCEEeC
Confidence 11111 12357789999999887 4444 466777888876544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.3e-06 Score=90.46 Aligned_cols=122 Identities=9% Similarity=0.101 Sum_probs=85.2
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQ-NLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.++||||||+|.||. .++..|.+. +++| .++|+++++.+.+.+..... ...+..+.+.+++++. ...|+|++|+
T Consensus 81 ~~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~-~~~~~~~~~~~~ll~~-~~vD~V~iat 158 (433)
T 1h6d_A 81 DRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIIL 158 (433)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECS
T ss_pred CCceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCC-cccccccCCHHHHhcC-CCCCEEEEcC
Confidence 3456899999999997 899998875 4564 68999999988877653210 0002357889998863 2389999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+..+.+.+... +..|+ ++++. .+....+.+++.+.+++.|+.+..+
T Consensus 159 p~~~h~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 207 (433)
T 1h6d_A 159 PNSLHAEFAIRA----FKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 207 (433)
T ss_dssp CGGGHHHHHHHH----HHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CchhHHHHHHHH----HHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 998665555433 33454 66654 3456678888888888888766544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.9e-06 Score=80.48 Aligned_cols=117 Identities=15% Similarity=0.158 Sum_probs=72.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHh-hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVH-SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~-~l~~advIi~~vp~~~ 81 (484)
|+|.|+|+|.+|..+|..|.+.|++|.++|+++++++.+.+..... -+... .+.+.+-+ .++++|+||++++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~---~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKAT---IIHGDGSHKEILRDAEVSKNDVVVILTPRD- 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSE---EEESCTTSHHHHHHHTCCTTCEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCe---EEEcCCCCHHHHHhcCcccCCEEEEecCCc-
Confidence 5899999999999999999999999999999999988876532110 01111 22222222 256799999999886
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.....+..++..+.+...+|-..+. +... +.+...|+..+-.|
T Consensus 77 ~~n~~~~~~a~~~~~~~~iia~~~~-~~~~----~~l~~~G~d~vi~p 119 (218)
T 3l4b_C 77 EVNLFIAQLVMKDFGVKRVVSLVND-PGNM----EIFKKMGITTVLNL 119 (218)
T ss_dssp HHHHHHHHHHHHTSCCCEEEECCCS-GGGH----HHHHHHTCEECCCH
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeC-cchH----HHHHHCCCCEEECH
Confidence 4444444555443333334333322 2222 23345576654444
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-07 Score=80.35 Aligned_cols=105 Identities=11% Similarity=0.120 Sum_probs=80.2
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
..+|+|||+ |.+|..++++|.+.||+ +|++|+.+. +++ . ++..+.|++|+.+. +|++++++
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i----~-----G~~~~~sl~el~~~---vDlavi~v 78 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL----F-----GEEAVASLLDLKEP---VDILDVFR 78 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE----T-----TEECBSSGGGCCSC---CSEEEECS
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC----C-----CEEecCCHHHCCCC---CCEEEEEe
Confidence 357999999 89999999999999997 777777641 111 0 36778899988775 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|+. .+.++++++...- .+.+|+..++. .+++.+.+++.|+.+++
T Consensus 79 p~~-~~~~v~~~~~~~g-i~~i~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 79 PPS-ALMDHLPEVLALR-PGLVWLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp CHH-HHTTTHHHHHHHC-CSCEEECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred CHH-HHHHHHHHHHHcC-CCEEEEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 984 7788887777643 34677776654 25667777888999986
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-07 Score=86.82 Aligned_cols=105 Identities=11% Similarity=0.115 Sum_probs=74.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+|+|||+|.||.+++..|++.|. +|+++||++++.+++.+.. +.....++.+.++. +|+||.++|.+..-
T Consensus 110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~------~~~~~~~~~~~~~~---aDiVInatp~gm~p 180 (253)
T 3u62_A 110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV------KIFSLDQLDEVVKK---AKSLFNTTSVGMKG 180 (253)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSC------EEEEGGGHHHHHHT---CSEEEECSSTTTTS
T ss_pred eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc------ccCCHHHHHhhhcC---CCEEEECCCCCCCC
Confidence 79999999999999999999998 9999999999877665422 12234566666666 99999999864210
Q ss_pred -HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 -DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 -~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
...+. ...+.++.+|+|.... +. .+.+...++|+.
T Consensus 181 ~~~~i~--~~~l~~~~~V~Divy~-~T---~ll~~A~~~G~~ 216 (253)
T 3u62_A 181 EELPVS--DDSLKNLSLVYDVIYF-DT---PLVVKARKLGVK 216 (253)
T ss_dssp CCCSCC--HHHHTTCSEEEECSSS-CC---HHHHHHHHHTCS
T ss_pred CCCCCC--HHHhCcCCEEEEeeCC-Cc---HHHHHHHHCCCc
Confidence 00110 1235689999998877 32 334444566765
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=98.36 E-value=7.8e-07 Score=92.40 Aligned_cols=99 Identities=9% Similarity=0.019 Sum_probs=76.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.+...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++....-+
T Consensus 258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 326 (479)
T 1v8b_A 258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG-------FN-VVTLDEIVDK---GDFFITCTGNVDVI 326 (479)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC-------CE-ecCHHHHHhc---CCEEEECCChhhhc
Confidence 6899999999999999999999999999999987653333222 33 3578888877 99999997443222
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQK 116 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~ 116 (484)
. .+.+..+++|.+|||+++... -+...+.+
T Consensus 327 ~---~~~l~~MK~gailiNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 327 K---LEHLLKMKNNAVVGNIGHFDDEIQVNELFN 357 (479)
T ss_dssp C---HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred C---HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence 1 355677899999999999987 37766665
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=4.9e-07 Score=87.21 Aligned_cols=109 Identities=19% Similarity=0.174 Sum_probs=77.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++.|||+|.||.+++..|++.|.+|+++||++++.+++. +.. +... +.+++. .+|+||.++|.+...
T Consensus 119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~------~~~~-~~~~l~----~~DiVInaTp~Gm~~ 186 (269)
T 3phh_A 119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLG------CDCF-MEPPKS----AFDLIINATSASLHN 186 (269)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHT------CEEE-SSCCSS----CCSEEEECCTTCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCC------CeEe-cHHHhc----cCCEEEEcccCCCCC
Confidence 5799999999999999999999999999999999998887 331 2222 333332 399999999976321
Q ss_pred HHHH--HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 84 DQTI--KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 84 ~~vl--~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..+ +.+...++++.+++|+... | .|. +.+..+++|...++
T Consensus 187 ~~~l~~~~l~~~l~~~~~v~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 187 ELPLNKEVLKGYFKEGKLAYDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp SCSSCHHHHHHHHHHCSEEEESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred CCCCChHHHHhhCCCCCEEEEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 1111 1222245678999999886 4 443 66677788876554
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=3.9e-06 Score=82.87 Aligned_cols=98 Identities=15% Similarity=0.130 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-----cCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-----EGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-----~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
++||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....+++.+++. +.++. +|+||++
T Consensus 2 ~~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~---aD~Vi~a 77 (309)
T 1ur5_A 2 RKKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN---SDVIVVT 77 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC---CCEEEEc
Confidence 3699999999999999999999997 999999998877543322111 001135555666 44444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+. .++++.+.+..+. ++.+|+..||
T Consensus 78 ~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~tN 120 (309)
T 1ur5_A 78 SGAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNN 120 (309)
T ss_dssp CCC--------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEcCC
Confidence 85542 1223445555554 6777777765
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.8e-06 Score=85.50 Aligned_cols=100 Identities=15% Similarity=0.254 Sum_probs=67.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH--HH-HHhhhc-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDE--TV-ERAKQE-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~--~~-~~~~~~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+|||+|||+|.||..+|..|+.+|+ +|+++|+++++++. .. ..+... +...+....+.+ .++. +|+||++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~---aD~Vii~ 82 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICRD---ADMVVIT 82 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH-HhCC---CCEEEEC
Confidence 4699999999999999999999999 99999999877652 21 111100 000122223443 3343 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++.+. .+++++..+.++ .++.+|+..+|..
T Consensus 83 v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~ 127 (319)
T 1lld_A 83 AGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPV 127 (319)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCch
Confidence 96542 122566677765 5778888887754
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=84.01 Aligned_cols=116 Identities=13% Similarity=0.172 Sum_probs=83.0
Q ss_pred CCCeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 2 VQTRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+|+||||||+|.||.. ++..+.+. +.+| .++|+++++.+++.++... ...++|++++++. +..|+|++|+|
T Consensus 22 ~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~I~tP 95 (350)
T 4had_A 22 SMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSV-----PHAFGSYEEMLAS-DVIDAVYIPLP 95 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-SSCSEEEECSC
T ss_pred CccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCC-----CeeeCCHHHHhcC-CCCCEEEEeCC
Confidence 3569999999999976 46666665 5565 4789999999988876531 2568899999875 34899999999
Q ss_pred CCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 79 AGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..+.+.++..+. .|+ ++++- -+....+++++.+..++.|+.+.-
T Consensus 96 ~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v 142 (350)
T 4had_A 96 TSQHIEWSIKAAD----AGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTE 142 (350)
T ss_dssp GGGHHHHHHHHHH----TTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEE
T ss_pred CchhHHHHHHHHh----cCCEEEEeCCcccchhhHHHHHHHHHHcCCceeE
Confidence 9977776655443 343 55552 123356788888888777765543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.9e-06 Score=85.58 Aligned_cols=115 Identities=13% Similarity=0.213 Sum_probs=82.6
Q ss_pred CCCeEEEEcccHHHH-HHHHHHHhCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 2 VQTRIGLAGLAVMGQ-NLALNIAEKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~-~lA~~L~~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+.||||||+|.+|. .++..+...+.+| .++|+++++.+++.+... ....+++++++++. ...|+|++|+|+
T Consensus 25 ~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~-----~~~~~~~~~~ll~~-~~vD~V~I~tp~ 98 (361)
T 3u3x_A 25 DELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYA-----DARRIATAEEILED-ENIGLIVSAAVS 98 (361)
T ss_dssp -CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSS-----SCCEESCHHHHHTC-TTCCEEEECCCH
T ss_pred cCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcC-----CCcccCCHHHHhcC-CCCCEEEEeCCh
Confidence 346899999999995 5777777788874 588999999988877542 14578899999875 348999999999
Q ss_pred CchHHHHHHHHhhhcCCC-CEEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 80 GSPVDQTIKTLSVYMEKG-DCIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+.+...+ ..| .++++- -+....+++++.+..++.|+.+.
T Consensus 99 ~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 143 (361)
T 3u3x_A 99 SERAELAIRAM----QHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFS 143 (361)
T ss_dssp HHHHHHHHHHH----HTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHH----HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 86655554433 344 355553 23456778888887777776543
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.5e-06 Score=86.65 Aligned_cols=120 Identities=15% Similarity=0.177 Sum_probs=84.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCC-CeeecC----CHhHHHhhcCCCcEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNL-PLYGFH----DPESFVHSIQKPRVI 73 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~-~~~~~~----s~~e~~~~l~~advI 73 (484)
|.++||||||+|.||...+..|.+. +++| .++|+++++.+.+.+..... ++ ....++ +++++++. ...|+|
T Consensus 18 ~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~-g~~~~~~~~~~~~~~~~ll~~-~~vD~V 95 (444)
T 2ixa_A 18 PKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKN-GKKPAKVFGNGNDDYKNMLKD-KNIDAV 95 (444)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHT-TCCCCEEECSSTTTHHHHTTC-TTCCEE
T ss_pred CCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhc-CCCCCceeccCCCCHHHHhcC-CCCCEE
Confidence 3456899999999999999999875 5665 58999999988876532111 00 135566 89998874 238999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
++|+|+..+.+.++..+ +.|+ ++++. -+....+.+++.+..++.|..+.
T Consensus 96 ~i~tp~~~h~~~~~~al----~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~ 146 (444)
T 2ixa_A 96 FVSSPWEWHHEHGVAAM----KAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLM 146 (444)
T ss_dssp EECCCGGGHHHHHHHHH----HTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEE
T ss_pred EEcCCcHHHHHHHHHHH----HCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 99999987766555443 3454 55553 34456778888888887787654
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.7e-06 Score=84.26 Aligned_cols=115 Identities=11% Similarity=0.135 Sum_probs=85.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLA-VMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG-~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+| .||..++..|.+. +++| .++|+++++.+++.+.. ++..+.|++++++. ...|+|++++|+
T Consensus 2 ~~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~------g~~~~~~~~ell~~-~~vD~V~i~tp~ 74 (387)
T 3moi_A 2 KIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY------GIPVFATLAEMMQH-VQMDAVYIASPH 74 (387)
T ss_dssp CEEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH------TCCEESSHHHHHHH-SCCSEEEECSCG
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc------CCCeECCHHHHHcC-CCCCEEEEcCCc
Confidence 4699999999 9999999999876 4554 58899999988877654 25678999999875 348999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+.+.+...+. .|+ ++++.- +.......++.+..+++|+.+..+
T Consensus 75 ~~H~~~~~~al~----aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~ 121 (387)
T 3moi_A 75 QFHCEHVVQASE----QGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVG 121 (387)
T ss_dssp GGHHHHHHHHHH----TTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHHHH----CCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEE
Confidence 876665543333 344 555532 445678888888888888766543
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.4e-06 Score=90.87 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=75.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.||..+|+.+...|.+|++||+++.+..+....+ +. ..+++++++. +|+|++++....-+
T Consensus 278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G-------~~-~~~l~ell~~---aDiVi~~~~t~~lI 346 (494)
T 3d64_A 278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEG-------YR-VVTMEYAADK---ADIFVTATGNYHVI 346 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTT-------CE-ECCHHHHTTT---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcC-------CE-eCCHHHHHhc---CCEEEECCCccccc
Confidence 6899999999999999999999999999999987643322211 33 3478888877 99999998543222
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH-HHHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAV 118 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l 118 (484)
. .+.+..+++|.+|||++..... +...+ +.+
T Consensus 347 ~---~~~l~~MK~gAilINvgrg~veID~~aL-~AL 378 (494)
T 3d64_A 347 N---HDHMKAMRHNAIVCNIGHFDSEIDVAST-RQY 378 (494)
T ss_dssp C---HHHHHHCCTTEEEEECSSSSCSBCCGGG-TTS
T ss_pred C---HHHHhhCCCCcEEEEcCCCcchhchHHH-Hhh
Confidence 1 3566778999999999998764 55555 444
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-06 Score=92.40 Aligned_cols=116 Identities=16% Similarity=0.221 Sum_probs=84.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHH---HHHc-CCCccchhhHHHHHHHHccCCCCCCc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELT---RIWK-GGCIIRAIFLDRIKKAYDRNPDLANV 396 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~---~iW~-~Gcii~s~ll~~i~~~~~~~~~~~~l 396 (484)
.+.++++|++||++.+..++.++|.+.++++. + ++..++. ..|+ .| ...|++++.....+.+.+.....
T Consensus 178 ~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~----G--~~~~~~~~l~~~w~~~g-~~~s~l~~~~~~~l~~~d~~G~~ 250 (478)
T 1pgj_A 178 GGAGSCVKMYHNSGEYAILQIWGEVFDILRAM----G--LNNDEVAAVLEDWKSKN-FLKSYMLDISIAAARAKDKDGSY 250 (478)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHHHHHTS-TTCBHHHHHHHHHHHCBCTTSSB
T ss_pred chHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHHhccCC-CcCchHHHhhchhhhcCCCCChh
Confidence 47899999999999999999999999998853 3 6665544 4577 88 67898888877777542211113
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 397 LVDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 397 l~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
.++...+...+++++ +|++..|.++|+|+|.+.+++. +++..+.+|.
T Consensus 251 ~ld~i~D~~~~kgtg--~~~~~~A~~~Gv~~Pi~~~av~~r~ls~~~~~r~ 299 (478)
T 1pgj_A 251 LTEHVMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQ 299 (478)
T ss_dssp GGGGBCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCccHH--HHHHHHHHHhCCCChHHHHHHHHHHHhCCCCHHH
Confidence 444434333345555 9999999999999999999985 6666665543
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8.2e-07 Score=77.62 Aligned_cols=105 Identities=14% Similarity=0.111 Sum_probs=77.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..+|+|||+ |.+|..++.+|.+.||+ +|++|+.. +++ . ++..+.+++|+.+. +|++++++|
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i----~-----G~~~y~sl~~l~~~---vDlvvi~vp 86 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV----L-----GRKCYPSVLDIPDK---IEVVDLFVK 86 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE----T-----TEECBSSGGGCSSC---CSEEEECSC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE----C-----CeeccCCHHHcCCC---CCEEEEEeC
Confidence 357999999 79999999999999997 56666553 111 1 36778899998765 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+. .+.++++++...- .+.+++..++. ..++.+.+++.|+.+++.
T Consensus 87 ~~-~~~~vv~~~~~~g-i~~i~~~~g~~----~~~l~~~a~~~Gi~vvGp 130 (144)
T 2d59_A 87 PK-LTMEYVEQAIKKG-AKVVWFQYNTY----NREASKKADEAGLIIVAN 130 (144)
T ss_dssp HH-HHHHHHHHHHHHT-CSEEEECTTCC----CHHHHHHHHHTTCEEEES
T ss_pred HH-HHHHHHHHHHHcC-CCEEEECCCch----HHHHHHHHHHcCCEEEcC
Confidence 85 7788887777643 34566554443 456677778889998863
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.4e-06 Score=85.87 Aligned_cols=108 Identities=17% Similarity=0.209 Sum_probs=66.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+++||||||+|.||..++..|.+. ++++. ++|+++++.+. .+. .....+++.+. ..+|+|++|+|+
T Consensus 8 ~~irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~-----~~~~~~~l~~~----~~~DvViiatp~ 75 (304)
T 3bio_A 8 KKIRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQ-----PFRVVSDIEQL----ESVDVALVCSPS 75 (304)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCT-----TSCEESSGGGS----SSCCEEEECSCH
T ss_pred CCCEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCC-----CcCCHHHHHhC----CCCCEEEECCCc
Confidence 356899999999999999999874 66776 79999887543 111 11223344333 349999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC---ChHHHHHHHHHHHHcCCeE
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE---WYENTERRQKAVAELGLLY 125 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~---~~~~~~~~~~~l~~~g~~~ 125 (484)
..+.+.+ ...++.|..|++.... .+....++.+..++.|..+
T Consensus 76 ~~h~~~~----~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~ 120 (304)
T 3bio_A 76 REVERTA----LEILKKGICTADSFDIHDGILALRRSLGDAAGKSGAAA 120 (304)
T ss_dssp HHHHHHH----HHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTCEE
T ss_pred hhhHHHH----HHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCCEE
Confidence 7554333 2345568888886542 3444556666666777543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=98.29 E-value=3.2e-06 Score=88.55 Aligned_cols=121 Identities=20% Similarity=0.219 Sum_probs=87.0
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... ....+.+++++++. ...|+|++
T Consensus 39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~---~~~~~~d~~ell~~-~~vD~V~I 114 (479)
T 2nvw_A 39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVV 114 (479)
T ss_dssp CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEE
T ss_pred cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEE
Confidence 458999999 99999999999986 6665 58999999988887653210 12478899999863 23899999
Q ss_pred ecCCCchHHHHHHHHhhhcC---CCCEEEec-CCCChHHHHHHHHHHHHcC-CeEEe
Q 011501 76 LVKAGSPVDQTIKTLSVYME---KGDCIIDG-GNEWYENTERRQKAVAELG-LLYLG 127 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~---~g~iiId~-st~~~~~~~~~~~~l~~~g-~~~i~ 127 (484)
|+|+..+.+.++..+....+ ...++++. -+..+.+++++.+.+++.| +.+.-
T Consensus 115 ~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v 171 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTII 171 (479)
T ss_dssp CSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEE
T ss_pred cCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 99998766655544433200 02477775 4556778888888888888 65543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.4e-07 Score=89.44 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=67.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCC-----e-------------eecCCHhHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP-----L-------------YGFHDPESFVH 65 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~-----~-------------~~~~s~~e~~~ 65 (484)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-.+. . ....++++.++
T Consensus 185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~ 264 (381)
T 3p2y_A 185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAIT 264 (381)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHh
Confidence 58999999999999999999999999999999998888766432100000 0 00112334444
Q ss_pred hcCCCcEEEEec--CCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 66 SIQKPRVIIMLV--KAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 66 ~l~~advIi~~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.+|+||.++ |....-.-+-++....+++|.+|||++.
T Consensus 265 ---~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 265 ---KFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp ---TCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred ---cCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence 499999986 4321111112566777889999999874
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=98.27 E-value=5.7e-06 Score=83.09 Aligned_cols=111 Identities=17% Similarity=0.259 Sum_probs=81.0
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+.||||||+|.||.. .+..+.+. +++| .++|+++++.+ +... ....+++++++++. ...|+|++|+|+
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 77 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---ADWP-----AIPVVSDPQMLFND-PSIDLIVIPTPN 77 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TTCS-----SCCEESCHHHHHHC-SSCCEEEECSCT
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 358999999999997 77777765 6665 48899988765 1111 35678899999875 348999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEE
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+.+...+ ..|+ ++++.- +....+.+++.+..++.|+.+.
T Consensus 78 ~~H~~~~~~al----~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (352)
T 3kux_A 78 DTHFPLAQSAL----AAGKHVVVDKPFTVTLSQANALKEHADDAGLLLS 122 (352)
T ss_dssp TTHHHHHHHHH----HTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHH----HCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 87766554443 3444 666644 5567788888888888887654
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.6e-06 Score=84.64 Aligned_cols=117 Identities=13% Similarity=0.203 Sum_probs=83.3
Q ss_pred CCeEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhc----CCCcE
Q 011501 3 QTRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSI----QKPRV 72 (484)
Q Consensus 3 ~~~IgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l----~~adv 72 (484)
+.||||||+|. ||...+..+...+ +++. ++|+++++.+++.++.... ....+++++++++.- ...|+
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~ 113 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLD---PSRVYSDFKEMAIREAKLKNGIEA 113 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCC---GGGBCSCHHHHHHHHHHCTTCCSE
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCC---cccccCCHHHHHhcccccCCCCcE
Confidence 35899999999 9999998888776 5654 6899999998887754210 015688999998741 34899
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEE
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 126 (484)
|++|+|+..+.+.+... +..|+ ++++.- +....+++++.+..++.|+.+.
T Consensus 114 V~I~tp~~~H~~~~~~a----l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 165 (417)
T 3v5n_A 114 VAIVTPNHVHYAAAKEF----LKRGIHVICDKPLTSTLADAKKLKKAADESDALFV 165 (417)
T ss_dssp EEECSCTTSHHHHHHHH----HTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEE
T ss_pred EEECCCcHHHHHHHHHH----HhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 99999998776655433 33454 555532 4456788888888888887654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=88.50 Aligned_cols=91 Identities=10% Similarity=0.041 Sum_probs=71.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.+|..+|+.|...|.+|++||+++.+.......+ +. ..+++++++. +|+|+++..+...+
T Consensus 212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G-------~~-~~sL~eal~~---ADVVilt~gt~~iI 280 (436)
T 3h9u_A 212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEG-------YQ-VLLVEDVVEE---AHIFVTTTGNDDII 280 (436)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhC-------Ce-ecCHHHHHhh---CCEEEECCCCcCcc
Confidence 5899999999999999999999999999999987765544332 23 3488898887 99999876544222
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
. .+....+++|.+||+++...+
T Consensus 281 ~---~e~l~~MK~gAIVINvgRg~v 302 (436)
T 3h9u_A 281 T---SEHFPRMRDDAIVCNIGHFDT 302 (436)
T ss_dssp C---TTTGGGCCTTEEEEECSSSGG
T ss_pred C---HHHHhhcCCCcEEEEeCCCCC
Confidence 2 245677899999999998765
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-06 Score=88.82 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=68.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCC---------ee-e------------cCCHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP---------LY-G------------FHDPE 61 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~---------~~-~------------~~s~~ 61 (484)
.+|+|||+|.||..+++.+...|.+|++||+++++.+.+.+.+...-... .. . ..+++
T Consensus 191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~ 270 (405)
T 4dio_A 191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVA 270 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHH
Confidence 58999999999999999999999999999999998877765432100000 00 0 11345
Q ss_pred HHHhhcCCCcEEEEec--CCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 62 SFVHSIQKPRVIIMLV--KAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 62 e~~~~l~~advIi~~v--p~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++. +|+||.++ |....-.-+-++....+++|.+|||++.
T Consensus 271 e~l~~---aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 271 EHIAK---QDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp HHHHT---CSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred HHhcC---CCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence 55555 99999986 3321111112567778999999999974
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-06 Score=87.70 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=87.8
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
++||||||+ |.||..++..|.+. +++| .++|+++++.+.+.+..... .+..+.+++++++. ...|+|++
T Consensus 20 ~irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~---~~~~~~~~~~ll~~-~~vD~V~i 95 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLS---NATAFPTLESFASS-STIDMIVI 95 (438)
T ss_dssp CEEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCT---TCEEESSHHHHHHC-SSCSEEEE
T ss_pred CCEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCC---cceeeCCHHHHhcC-CCCCEEEE
Confidence 358999999 99999999999987 6665 68999999988877653210 13468899999873 23899999
Q ss_pred ecCCCchHHHHHHHHhhhc---CCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 76 LVKAGSPVDQTIKTLSVYM---EKGDCIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l---~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+|+..+.+.++..+.... +...++++. .+....+++++.+.+++.|+.+..+
T Consensus 96 ~tp~~~H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~ 152 (438)
T 3btv_A 96 AIQVASHYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIIS 152 (438)
T ss_dssp CSCHHHHHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEE
T ss_pred eCCcHHHHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEe
Confidence 9999866665554443320 002577774 4556778888888888888765443
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=9.8e-06 Score=80.38 Aligned_cols=101 Identities=17% Similarity=0.222 Sum_probs=67.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH----HHHHhhhc-CCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDE----TVERAKQE-GNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~----~~~~~~~~-~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
|.++||+|||+|.||.++|..|+..|+ +|.+||+++++++. +.+..... ...++..+++. +.++. +|+||
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~---aDiVI 80 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEG---ADVVI 80 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTT---CSEEE
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCC---CCEEE
Confidence 667899999999999999999999999 99999999987642 22211000 01134555665 44454 99999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+.+. .++++.+.+..+. ++.+++..||-
T Consensus 81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivvtNP 126 (324)
T 3gvi_A 81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYA-PEAFVICITNP 126 (324)
T ss_dssp ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHC-CCeEEEecCCC
Confidence 9975432 1233335555554 67788888864
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.24 E-value=7.1e-06 Score=82.85 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=78.7
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.||||||+|.||.. .+..+.+. +++| .++|+++++.++ ... ....+++++++++. ...|+|++|+|+.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~---~~~-----~~~~~~~~~~ll~~-~~~D~V~i~tp~~ 78 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR---DLP-----DVTVIASPEAAVQH-PDVDLVVIASPNA 78 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH---HCT-----TSEEESCHHHHHTC-TTCSEEEECSCGG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh---hCC-----CCcEECCHHHHhcC-CCCCEEEEeCChH
Confidence 58999999999997 66677665 6676 488999977542 211 35778999999873 2389999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecC--CCChHHHHHHHHHHHHcCCeEE
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGG--NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+.+.+... +..|+-|+.-- +....+++++.+.+++.|+.+.
T Consensus 79 ~H~~~~~~a----l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 122 (364)
T 3e82_A 79 THAPLARLA----LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLS 122 (364)
T ss_dssp GHHHHHHHH----HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHH----HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEE
Confidence 776655443 33455444433 4566788888888888887654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=2.6e-06 Score=85.82 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=75.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|+|+|.||..+|+.|.+.|.+|+++|+++++++++.+... .... +.+++.. ..+|+++.|.....-.
T Consensus 174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~g------a~~v-~~~~ll~--~~~DIvip~a~~~~I~ 244 (364)
T 1leh_A 174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------ADAV-APNAIYG--VTCDIFAPCALGAVLN 244 (364)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CEEC-CGGGTTT--CCCSEEEECSCSCCBS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcC------CEEE-ChHHHhc--cCCcEeeccchHHHhC
Confidence 68999999999999999999999999999999998887766531 2333 4445443 1399999886554221
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
... ++.+ ...+|++.++.. .+..+..+.+.++|+.|+.
T Consensus 245 ~~~----~~~l-g~~iV~e~An~p-~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 245 DFT----IPQL-KAKVIAGSADNQ-LKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp TTH----HHHC-CCSEECCSCSCC-BSSHHHHHHHHHHTCEECC
T ss_pred HHH----HHhC-CCcEEEeCCCCC-cccHHHHHHHHhCCCEEec
Confidence 222 2334 446677676664 3434566778888986653
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-06 Score=82.45 Aligned_cols=111 Identities=16% Similarity=0.261 Sum_probs=78.7
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||.. .+..+.+. +++| .++|+++++. .+... ....+++++++++. ...|+|++|+|+
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~---~~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 75 (358)
T 3gdo_A 5 TIKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEV---KRDFP-----DAEVVHELEEITND-PAIELVIVTTPS 75 (358)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHH---HHHCT-----TSEEESSTHHHHTC-TTCCEEEECSCT
T ss_pred cceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH---HhhCC-----CCceECCHHHHhcC-CCCCEEEEcCCc
Confidence 468999999999997 67777665 6665 5789998763 22221 25678999999874 238999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEE
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+.+...+. .|+ ++++.- +....+++++.+..++.|+.+.
T Consensus 76 ~~H~~~~~~al~----aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 76 GLHYEHTMACIQ----AGKHVVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp TTHHHHHHHHHH----TTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHH----cCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 977665554433 444 555532 4456788888888888777654
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.7e-06 Score=84.38 Aligned_cols=114 Identities=12% Similarity=0.119 Sum_probs=84.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC---------Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG---------FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G---------~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
.||||||+|.||...+..+.+.+ .+ |.++|+++++++++.++... ...++|.+++++. ...|+|
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~-----~~~y~d~~~ll~~-~~vD~V 100 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGA-----EKAYGDWRELVND-PQVDVV 100 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESSHHHHHHC-TTCCEE
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCC-----CeEECCHHHHhcC-CCCCEE
Confidence 48999999999999998887642 34 55789999999988876531 2578899999875 348999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
++|+|+..+.+.++..+. .|+ ++++. -+....+++++.+..++.|+.+.-
T Consensus 101 ~I~tp~~~H~~~~~~al~----aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v 152 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIA----AGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMV 152 (412)
T ss_dssp EECSCGGGHHHHHHHHHH----TTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred EECCCcHHHHHHHHHHHH----cCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeee
Confidence 999999987776655544 343 55552 233457788888877777776543
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.21 E-value=6.8e-06 Score=84.01 Aligned_cols=117 Identities=11% Similarity=0.049 Sum_probs=83.9
Q ss_pred CCeEEEEcccH---HHHHHHHHHHhCC-CcEE--EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhc----CCCcE
Q 011501 3 QTRIGLAGLAV---MGQNLALNIAEKG-FPIS--VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSI----QKPRV 72 (484)
Q Consensus 3 ~~~IgiIGlG~---mG~~lA~~L~~~G-~~V~--v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l----~~adv 72 (484)
+.||||||+|. ||...+..+...+ +++. ++|+++++.+++.++.... ....++|++++++.- ...|+
T Consensus 12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~---~~~~~~~~~~ll~~~~~~~~~vD~ 88 (398)
T 3dty_A 12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVD---SERCYADYLSMFEQEARRADGIQA 88 (398)
T ss_dssp CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCC---GGGBCSSHHHHHHHHTTCTTCCSE
T ss_pred cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCC---cceeeCCHHHHHhcccccCCCCCE
Confidence 45899999999 9999998888765 5665 6799999988887654210 015788999998742 24899
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
|++|+|+..+.+.+...+. .|+ ++++. -+....+++++.+..++.|+.+.
T Consensus 89 V~i~tp~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~ 140 (398)
T 3dty_A 89 VSIATPNGTHYSITKAALE----AGLHVVCEKPLCFTVEQAENLRELSHKHNRIVG 140 (398)
T ss_dssp EEEESCGGGHHHHHHHHHH----TTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred EEECCCcHHHHHHHHHHHH----CCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 9999999877665544433 344 44442 23456788888888888887654
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.21 E-value=3.9e-06 Score=84.76 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=85.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+|||.|||+|.+|+.++..|++ .++|.++|++.++++.+.+... .+.. ..+.+++.+.++++|+||.|+|...
T Consensus 16 ~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~-----~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~ 89 (365)
T 3abi_A 16 HMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFAT-----PLKVDASNFDKLVEVMKEFELVIGALPGFL 89 (365)
T ss_dssp CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSE-----EEECCTTCHHHHHHHHTTCSEEEECCCGGG
T ss_pred ccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCC-----cEEEecCCHHHHHHHHhCCCEEEEecCCcc
Confidence 4799999999999999999876 5899999999988877654221 1111 2355555555566999999998863
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGE 134 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~ 134 (484)
-..+++.. +..|.-++|.|-.. +...++.+..++.|+.++. +++..|.
T Consensus 90 -~~~v~~~~---~~~g~~yvD~s~~~-~~~~~l~~~a~~~g~~~i~~~G~~PG~ 138 (365)
T 3abi_A 90 -GFKSIKAA---IKSKVDMVDVSFMP-ENPLELRDEAEKAQVTIVFDAGFAPGL 138 (365)
T ss_dssp -HHHHHHHH---HHHTCEEEECCCCS-SCGGGGHHHHHHTTCEEECCCBTTTBH
T ss_pred -cchHHHHH---HhcCcceEeeeccc-hhhhhhhhhhccCCceeeecCCCCCch
Confidence 34454443 44678899988554 4556677777788887654 5655554
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-06 Score=85.21 Aligned_cols=113 Identities=9% Similarity=0.165 Sum_probs=78.0
Q ss_pred CCeEEEEcccHHHHHHHHH-H-Hh-CCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALN-I-AE-KGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~-L-~~-~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++||||||+|.||..+... + .. .+++|. ++|+++++.+.+.+.. ++..++|++++++. ...|+|++|+|
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~------~~~~~~~~~~ll~~-~~~D~V~i~tp 74 (345)
T 3f4l_A 2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYS------HIHFTSDLDEVLND-PDVKLVVVCTH 74 (345)
T ss_dssp CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGT------TCEEESCTHHHHTC-TTEEEEEECSC
T ss_pred ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcC------CCceECCHHHHhcC-CCCCEEEEcCC
Confidence 4699999999999975444 4 33 366765 8999988753322211 35778999999874 34799999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecC--CCChHHHHHHHHHHHHcCCeEE
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGG--NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~s--t~~~~~~~~~~~~l~~~g~~~i 126 (484)
+..+.+.+... +..|+-|+.-- +..+.+++++.+.++++|+.+.
T Consensus 75 ~~~h~~~~~~a----l~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~ 120 (345)
T 3f4l_A 75 ADSHFEYAKRA----LEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVT 120 (345)
T ss_dssp GGGHHHHHHHH----HHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHH----HHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 98776655433 34555555433 4456788888888888887664
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=80.03 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=83.7
Q ss_pred CCeEEEEccc-HHHHHHHHHHHhC--CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLA-VMGQNLALNIAEK--GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG-~mG~~lA~~L~~~--G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+.||||||+| .||...+..|.+. ++++ .++|+++++.+++.++... ...++|++++++. ...|+|++|+|
T Consensus 18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~-----~~~~~~~~~ll~~-~~vD~V~i~tp 91 (340)
T 1zh8_A 18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLTLP 91 (340)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEECCC
T ss_pred ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCC-----CcccCCHHHHhcC-CCCCEEEEeCC
Confidence 3589999999 8999999999876 4555 6899999999888765421 2678899999874 34899999999
Q ss_pred CCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 79 AGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..+.+.+...+ ..|+ ++++. -+....+.+++.+..++.|+.+..
T Consensus 92 ~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 138 (340)
T 1zh8_A 92 VELNLPFIEKAL----RKGVHVICEKPISTDVETGKKVVELSEKSEKTVYI 138 (340)
T ss_dssp GGGHHHHHHHHH----HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEE
T ss_pred chHHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 987655544333 3444 55553 234567777888877777775543
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.8e-06 Score=79.12 Aligned_cols=87 Identities=20% Similarity=0.157 Sum_probs=60.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|+||+|+|+|.||+.++..+.+.++++. ++|++++. . . ++..+++++++. . +|+||-+.++
T Consensus 1 M~MmkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~----~---gv~v~~dl~~l~-~---~DVvIDft~p 64 (243)
T 3qy9_A 1 MASMKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----T----T---PYQQYQHIADVK-G---ADVAIDFSNP 64 (243)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-----------C---CSCBCSCTTTCT-T---CSEEEECSCH
T ss_pred CCceEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----c----C---CCceeCCHHHHh-C---CCEEEEeCCh
Confidence 777899999999999999999998877654 47988762 1 1 356778888876 5 9999855433
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. .+...+ . +..|.-+|.++|....
T Consensus 65 ~-a~~~~~----~-l~~g~~vVigTTG~s~ 88 (243)
T 3qy9_A 65 N-LLFPLL----D-EDFHLPLVVATTGEKE 88 (243)
T ss_dssp H-HHHHHH----T-SCCCCCEEECCCSSHH
T ss_pred H-HHHHHH----H-HhcCCceEeCCCCCCH
Confidence 2 333333 2 6677777777777533
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.6e-05 Score=78.85 Aligned_cols=101 Identities=15% Similarity=0.142 Sum_probs=67.3
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhc-----CCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQE-----GNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~-----~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
|.++||+|||+|.||.++|..|+..|+ +|.++|+++++++......... ...++..+.+. +.++. +|+||
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~a~~~---aDvVI 78 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-KDLEN---SDVVI 78 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT---CSEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-HHHCC---CCEEE
Confidence 667899999999999999999999988 9999999998765332211110 01134444554 34444 99999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+.+. .++++++.+..+. ++.+++..||-
T Consensus 79 i~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~vivvtNP 124 (321)
T 3p7m_A 79 VTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNC-PNAFVICITNP 124 (321)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCSS
T ss_pred EcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHC-CCcEEEEecCc
Confidence 9975441 1233445555554 66777777653
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-06 Score=83.05 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=80.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--------CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--------GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--------G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
-||||||+|.||...+..+... +.+ |.++|+++++.+++.++... ...++|.+++++. ++.|+|+
T Consensus 26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~-----~~~y~d~~ell~~-~~iDaV~ 99 (393)
T 4fb5_A 26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGF-----EKATADWRALIAD-PEVDVVS 99 (393)
T ss_dssp CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTC-----SEEESCHHHHHHC-TTCCEEE
T ss_pred ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCC-----CeecCCHHHHhcC-CCCcEEE
Confidence 4799999999999887776542 344 56889999999988876531 2578899999875 3489999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+|+|+..+.+.++..+. .|+ ++++- -+....+++++.+..++.|+.+.
T Consensus 100 IatP~~~H~~~a~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 100 VTTPNQFHAEMAIAALE----AGKHVWCEKPMAPAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp ECSCGGGHHHHHHHHHH----TTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEE
T ss_pred ECCChHHHHHHHHHHHh----cCCeEEEccCCcccHHHHHHhhhhHHhcCCccc
Confidence 99999988776655544 343 55552 23345778888888888877553
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.6e-05 Score=68.35 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=74.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC-hhHHHHHHHHhhhcCCCCe-eec-CCHhHHHh-hcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRT-TSKVDETVERAKQEGNLPL-YGF-HDPESFVH-SIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~-~~~~~~~~~~~~~~~~~~~-~~~-~s~~e~~~-~l~~advIi~~ 76 (484)
|..++|.|+|+|.+|..++..|.+.|++|+++|++ +++.+.+...... +..+ ... .+.+.+.+ .++++|.||++
T Consensus 1 ~~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~--~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 78 (153)
T 1id1_A 1 HRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD--NADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CCCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT--TCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcC--CCeEEEcCCCCHHHHHHcChhhCCEEEEe
Confidence 66678999999999999999999999999999998 4655555432211 0111 111 23333322 25679999999
Q ss_pred cCCCchHHHHHHHHhhhc-CCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 77 VKAGSPVDQTIKTLSVYM-EKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l-~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
++++ .....+...+..+ +...+|+...+.. .. +.+...|+..+-.
T Consensus 79 ~~~d-~~n~~~~~~a~~~~~~~~ii~~~~~~~--~~----~~l~~~G~~~vi~ 124 (153)
T 1id1_A 79 SDND-ADNAFVVLSAKDMSSDVKTVLAVSDSK--NL----NKIKMVHPDIILS 124 (153)
T ss_dssp SSCH-HHHHHHHHHHHHHTSSSCEEEECSSGG--GH----HHHHTTCCSEEEC
T ss_pred cCCh-HHHHHHHHHHHHHCCCCEEEEEECCHH--HH----HHHHHcCCCEEEc
Confidence 9886 4444444444444 4456776665543 22 2344567654433
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=2.7e-06 Score=82.79 Aligned_cols=114 Identities=18% Similarity=0.106 Sum_probs=79.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|+|+|.||.+++..|++.|. +|+++||++++.+++.+.....+ .+.. .+.+++.. .+|+||.++|.+..
T Consensus 127 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~--~~~~-~~~~~l~~---~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 127 ATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG--EVKA-QAFEQLKQ---SYDVIINSTSASLD 200 (281)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCS---CEEEEEECSCCCC-
T ss_pred CEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC--CeeE-eeHHHhcC---CCCEEEEcCcCCCC
Confidence 579999999999999999999996 99999999999988877654211 1222 24455443 49999999998843
Q ss_pred HHHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe-EEe
Q 011501 83 VDQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL-YLG 127 (484)
Q Consensus 83 v~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~ 127 (484)
.+.. +. ...+.++.+|+|+...+ ..|. +.+..+++|.. .++
T Consensus 201 ~~~~~l~--~~~l~~~~~V~DlvY~P-~~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 201 GELPAID--PVIFSSRSVCYDMMYGK-GYTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp ---CSCC--GGGEEEEEEEEESCCCS-SCCH-HHHHHHHTTCSEEEC
T ss_pred CCCCCCC--HHHhCcCCEEEEecCCC-ccCH-HHHHHHHCCCCEEEC
Confidence 2211 10 13466789999998764 4443 44667778875 443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-05 Score=83.17 Aligned_cols=76 Identities=16% Similarity=0.277 Sum_probs=54.8
Q ss_pred CCCCeEEEEcccHH--HHHHHHHHHhC----CCcEEEEeCChhHHHHHHHHhhh---cC--CCCeeecCCHhHHHhhcCC
Q 011501 1 MVQTRIGLAGLAVM--GQNLALNIAEK----GFPISVYNRTTSKVDETVERAKQ---EG--NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIGlG~m--G~~lA~~L~~~----G~~V~v~dr~~~~~~~~~~~~~~---~~--~~~~~~~~s~~e~~~~l~~ 69 (484)
|+++||+|||+|.| |.++|..|+.. |++|.+||+++++++........ .. ..+++.++++++.++.
T Consensus 1 m~~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~d--- 77 (480)
T 1obb_A 1 MPSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID--- 77 (480)
T ss_dssp -CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCC---
Confidence 66789999999997 56667788754 89999999999887654332110 00 1146667788777776
Q ss_pred CcEEEEecCC
Q 011501 70 PRVIIMLVKA 79 (484)
Q Consensus 70 advIi~~vp~ 79 (484)
||+||+++|.
T Consensus 78 AD~VIiaagv 87 (480)
T 1obb_A 78 ADFVINTAMV 87 (480)
T ss_dssp CSEEEECCCT
T ss_pred CCEEEECCCc
Confidence 9999999975
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=79.11 Aligned_cols=100 Identities=13% Similarity=0.148 Sum_probs=64.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHH---hhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVER---AKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~---~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+++||+|||+|.+|.+++..|+..|. +|.++|+++++++..... .....+..+....+..+.++. +|+||++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~---aDvVvi~ 81 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHD---ADLVVIC 81 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTT---CSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCC---CCEEEEC
Confidence 45699999999999999999998884 899999998776542211 110000122333233444444 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+. .++++.+.+.++ .++.+||..||
T Consensus 82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (317)
T 3d0o_A 82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVATN 124 (317)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 97652 133344555555 57777777664
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.8e-06 Score=82.34 Aligned_cols=117 Identities=21% Similarity=0.161 Sum_probs=76.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+++++.+ ..+|+||.++|.+..
T Consensus 119 ~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~--~~~~-~~~~~~~~--~~~DivIn~t~~~~~ 193 (272)
T 1p77_A 119 NQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQA-VSMDSIPL--QTYDLVINATSAGLS 193 (272)
T ss_dssp TCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEE-EEGGGCCC--SCCSEEEECCCC---
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccC--CeEE-eeHHHhcc--CCCCEEEECCCCCCC
Confidence 358999999999999999999999999999999999888876542110 1222 23333322 249999999998743
Q ss_pred HHHHHHHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe-EEe
Q 011501 83 VDQTIKTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLL-YLG 127 (484)
Q Consensus 83 v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~ 127 (484)
. .+. .+. ..+.++.+++|++......+. +.+..+++|.. +++
T Consensus 194 ~-~~~-~i~~~~l~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 194 G-GTA-SVDAEILKLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp ------CCCHHHHHHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred C-CCC-CCCHHHcCCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 2 110 111 124568899999986543243 45566777876 654
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=81.18 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=80.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC--------Cc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCc
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG--------FP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G--------~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ad 71 (484)
|++-||||||+|.||...+..+.... .+ |.++|+++++.+.+.++... ...++|.+++++. ...|
T Consensus 4 M~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~-----~~~~~d~~~ll~~-~~iD 77 (390)
T 4h3v_A 4 MTNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGW-----STTETDWRTLLER-DDVQ 77 (390)
T ss_dssp CCEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTC-----SEEESCHHHHTTC-TTCS
T ss_pred CCcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCC-----CcccCCHHHHhcC-CCCC
Confidence 44458999999999999888877532 13 56889999999888876531 2567899999875 3489
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHH---HHHHcCCeEE
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQK---AVAELGLLYL 126 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~---~l~~~g~~~i 126 (484)
+|++|+|+..+.+.++..+... ..+++.- -+....+++++.+ ...+.|+.+.
T Consensus 78 aV~I~tP~~~H~~~~~~al~aG---khVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~ 133 (390)
T 4h3v_A 78 LVDVCTPGDSHAEIAIAALEAG---KHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSM 133 (390)
T ss_dssp EEEECSCGGGHHHHHHHHHHTT---CEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCChHHHHHHHHHHHHcC---CCceeecCcccchhHHHHHHHHHHHHHhcCCceE
Confidence 9999999998877766555432 2355552 2233467777743 3555666443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-06 Score=83.28 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=79.1
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+.||||||+|.||.. .+..|.+. +++| .++|+++++.. +... ....+++++++++. ...|+|++|+|+
T Consensus 5 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~---~~~~-----~~~~~~~~~~ll~~-~~vD~V~i~tp~ 75 (362)
T 3fhl_A 5 IIKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK---ERYP-----QASIVRSFKELTED-PEIDLIVVNTPD 75 (362)
T ss_dssp CEEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG---TTCT-----TSEEESCSHHHHTC-TTCCEEEECSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH---HhCC-----CCceECCHHHHhcC-CCCCEEEEeCCh
Confidence 458999999999997 67777765 6666 47899987632 2111 35778999999875 348999999999
Q ss_pred CchHHHHHHHHhhhcCCC-CEEEecC-CCChHHHHHHHHHHHHcCCeEE
Q 011501 80 GSPVDQTIKTLSVYMEKG-DCIIDGG-NEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g-~iiId~s-t~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+.+.+...+. .| .++++.- +....+++++.+..++.|+.+.
T Consensus 76 ~~H~~~~~~al~----aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 76 NTHYEYAGMALE----AGKNVVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp GGHHHHHHHHHH----TTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHH----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 877665544433 34 4566532 4556788888888888887654
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.6e-05 Score=77.74 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHHhhhc-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDE----TVERAKQE-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----~~~~~~~~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||.++|..|+.+|+ +|.+||+++++++. +....... ...++..+++ .+.++. +|+||++
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~---aDiVVia 76 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999998 89999999988652 22211100 0112444556 555555 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.+.+. .++++.+.+..+ .++.+++..||
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~iivvsN 119 (294)
T 1oju_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTN 119 (294)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSS
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhh-CCCeEEEEeCC
Confidence 85542 122333455555 57788888885
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=9e-06 Score=84.92 Aligned_cols=91 Identities=10% Similarity=0.058 Sum_probs=72.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|||+|.||..+|+.+...|.+|+++|+++.+.+.+...+ +. ..++++++.. +|+|+.+++....+
T Consensus 275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G-------a~-~~~l~e~l~~---aDvVi~atgt~~~i 343 (494)
T 3ce6_A 275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG-------FD-VVTVEEAIGD---ADIVVTATGNKDII 343 (494)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECSSSSCSB
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-------CE-EecHHHHHhC---CCEEEECCCCHHHH
Confidence 5899999999999999999999999999999998876655443 33 3467787766 99999999876433
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
. .+.+..+++|.+|++.+....
T Consensus 344 ~---~~~l~~mk~ggilvnvG~~~~ 365 (494)
T 3ce6_A 344 M---LEHIKAMKDHAILGNIGHFDN 365 (494)
T ss_dssp C---HHHHHHSCTTCEEEECSSSGG
T ss_pred H---HHHHHhcCCCcEEEEeCCCCC
Confidence 2 245566889999999998653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-06 Score=84.16 Aligned_cols=114 Identities=13% Similarity=0.216 Sum_probs=79.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.||||||+| +|...+..+.+. ++++. ++|+++++.+++.++. ++..++|.+++.+. .|++++++|+.
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~------gv~~~~~~~~l~~~---~D~v~i~~p~~ 77 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAF------GIPLYTSPEQITGM---PDIACIVVRST 77 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHT------TCCEESSGGGCCSC---CSEEEECCC--
T ss_pred CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHh------CCCEECCHHHHhcC---CCEEEEECCCc
Confidence 589999999 899888888765 56654 7899999998887754 36778999999876 99999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+...-.+-....+..|.-|+.-=...+.+..++.+..+++|+.|.-
T Consensus 78 ~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v 124 (372)
T 4gmf_A 78 VAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWI 124 (372)
T ss_dssp CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEE
Confidence 55211111112223455544443345667888888888888887654
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=80.65 Aligned_cols=115 Identities=11% Similarity=0.176 Sum_probs=78.6
Q ss_pred CCeEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQ-NLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||. ..+..+.+. +++| .++|++ +.+++.+..... ++..+++++++++. .+.|+|++|+|+
T Consensus 2 ~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~---~~~~~~~~~~ll~~-~~~D~V~i~tp~ 75 (349)
T 3i23_A 2 TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEK---GVNFTADLNELLTD-PEIELITICTPA 75 (349)
T ss_dssp CEEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTT---TCEEESCTHHHHSC-TTCCEEEECSCG
T ss_pred eeEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCC---CCeEECCHHHHhcC-CCCCEEEEeCCc
Confidence 46999999999998 466666654 5666 488988 444554432111 36778999999874 348999999999
Q ss_pred CchHHHHHHHHhhhcCCCC-EEEecC-CCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKGD-CIIDGG-NEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~-iiId~s-t~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..+.+.+...+ ..|+ ++++.- +..+.+.+++.+..+++|+.+.-
T Consensus 76 ~~h~~~~~~al----~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 121 (349)
T 3i23_A 76 HTHYDLAKQAI----LAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMP 121 (349)
T ss_dssp GGHHHHHHHHH----HTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHH----HcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 87766554433 3444 555532 44567788888888888876543
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-05 Score=75.78 Aligned_cols=99 Identities=10% Similarity=0.158 Sum_probs=64.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--hhHHHHHHHHhhh----c-CCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--TSKVDETVERAKQ----E-GNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--~~~~~~~~~~~~~----~-~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
.+||+|||+|.||.++|..|+.+|+ +|.++|++ +++.+........ . ...++..+++.++ ++. +|+||
T Consensus 8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a-~~~---aDvVI 83 (315)
T 3tl2_A 8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYAD-TAD---SDVVV 83 (315)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGG-GTT---CSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHH-hCC---CCEEE
Confidence 3589999999999999999999999 99999999 4444332211100 0 0113444555543 343 99999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++...+. .++++.+.+..+ .++.+++..||-
T Consensus 84 iaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vlvvsNP 129 (315)
T 3tl2_A 84 ITAGIARKPGMSRDDLVATNSKIMKSITRDIAKH-SPNAIIVVLTNP 129 (315)
T ss_dssp ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECCSS
T ss_pred EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEECCCh
Confidence 9985432 123333455555 367788888864
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=2.1e-05 Score=77.90 Aligned_cols=99 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCC--CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNL--PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
++||+|||+|.+|.+++..|+..|+ +|.++|+++++++...........+ +++...+..+.++ .+|+||++++
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~---~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVK---DCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGT---TCSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhC---CCCEEEEcCC
Confidence 3689999999999999999999988 8999999987755432222110000 1222222233344 4999999998
Q ss_pred CCch---------------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 79 AGSP---------------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 79 ~~~~---------------v~~vl~~l~~~l~~g~iiId~st 105 (484)
.+.. +.++.+.+.++ .++.+|+..||
T Consensus 84 ~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~tN 124 (318)
T 1y6j_A 84 ANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVSN 124 (318)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECSS
T ss_pred CCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEecC
Confidence 7531 34555666666 46777777644
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=81.89 Aligned_cols=75 Identities=12% Similarity=0.233 Sum_probs=56.9
Q ss_pred CCCeEEEEcccHH--HHHHHHHHHh----CCCcEEEEeCChhHHHHHHHHhhhc--CCCCeeecCCHhHHHhhcCCCcEE
Q 011501 2 VQTRIGLAGLAVM--GQNLALNIAE----KGFPISVYNRTTSKVDETVERAKQE--GNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 2 ~~~~IgiIGlG~m--G~~lA~~L~~----~G~~V~v~dr~~~~~~~~~~~~~~~--~~~~~~~~~s~~e~~~~l~~advI 73 (484)
+.+||+|||.|.| |.+++..|+. .| +|.+||+++++++........- ...+++.+++.+++++. +|+|
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~d---ADfV 79 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSA---ADIV 79 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTT---CSEE
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcC---CCEE
Confidence 3469999999997 6899988886 57 9999999998876654322100 01146778899988887 9999
Q ss_pred EEecCCC
Q 011501 74 IMLVKAG 80 (484)
Q Consensus 74 i~~vp~~ 80 (484)
|++++.+
T Consensus 80 I~airvG 86 (450)
T 3fef_A 80 IISILPG 86 (450)
T ss_dssp EECCCSS
T ss_pred EeccccC
Confidence 9999765
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-05 Score=80.73 Aligned_cols=118 Identities=12% Similarity=0.142 Sum_probs=79.5
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~~ 76 (484)
|.+++|.|+|+|.+|..++..|++.|++|.++||++++.+++.+... ++.. ..+.+++.+.++++|+||.+
T Consensus 1 M~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~-----~~~~~~~Dv~d~~~l~~~l~~~DvVIn~ 75 (450)
T 1ff9_A 1 MATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTPISLDVNDDAALDAEVAKHDLVISL 75 (450)
T ss_dssp -CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCT-----TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcC-----CceEEEeecCCHHHHHHHHcCCcEEEEC
Confidence 77779999999999999999999999999999999988776654221 1111 22334333333459999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+|...+. .+... .+.+|..++|.+...+ .+..+.+.+++.|+.++..
T Consensus 76 a~~~~~~-~i~~a---~l~~g~~vvd~~~~~~-~~~~l~~aA~~aGv~~i~g 122 (450)
T 1ff9_A 76 IPYTFHA-TVIKS---AIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMNE 122 (450)
T ss_dssp CC--CHH-HHHHH---HHHHTCEEEESSCCCH-HHHHTHHHHHHTTCEEECS
T ss_pred Cccccch-HHHHH---HHhCCCeEEEeecccH-HHHHHHHHHHHCCCeEEeC
Confidence 9876432 23222 2445778888876554 4556777778888876653
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=2.6e-05 Score=77.18 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=63.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC-CC--CeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG-NL--PLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~-~~--~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++||+|||+|.||.++|..|+..|. +|.++|+++++.+.......... .. ..+...+..+.++. +|+||++.
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~---aDvViia~ 82 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRD---ADLVVICA 82 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTT---CSEEEECC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCC---CCEEEEcC
Confidence 4699999999999999999998775 89999999876554322211100 00 12222333344444 99999998
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.+. .+.++++.+..+. ++.+++..||
T Consensus 83 ~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~~iv~tN 124 (316)
T 1ldn_A 83 GANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATN 124 (316)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSS
T ss_pred CCCCCCCCCHHHHHHcChHHHHHHHHHHHHHC-CCCEEEEeCC
Confidence 7653 1234445555554 5666777766
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=80.35 Aligned_cols=90 Identities=18% Similarity=0.259 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh------HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS------KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~------~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++|+|||.|..|.+-|+||.+.|.+|.+--|... ..+.+.+. ++.+ .+++|+++. +|+|++.+
T Consensus 38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~-------Gf~v-~~~~eA~~~---ADvV~~L~ 106 (491)
T 3ulk_A 38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN-------GFKV-GTYEELIPQ---ADLVINLT 106 (491)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHT-------TCEE-EEHHHHGGG---CSEEEECS
T ss_pred CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHC-------CCEe-cCHHHHHHh---CCEEEEeC
Confidence 5899999999999999999999999999887432 22233322 2443 478899888 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
|+. .-..+.+.+.|.|++|+++.-...
T Consensus 107 PD~-~q~~vy~~I~p~lk~G~~L~faHG 133 (491)
T 3ulk_A 107 PDK-QHSDVVRTVQPLMKDGAALGYSHG 133 (491)
T ss_dssp CGG-GHHHHHHHHGGGSCTTCEEEESSC
T ss_pred Chh-hHHHHHHHHHhhCCCCCEEEecCc
Confidence 997 445667889999999999875443
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.05 E-value=3e-05 Score=74.91 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=77.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+++.|+|+|.||.+++..|++.|.+|+++||++++.+++.+.....+ .+.. .+.+++.+ ..+|+||.++|.+..
T Consensus 119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~--~~~~-~~~~~~~~--~~~DivVn~t~~~~~ 193 (271)
T 1nyt_A 119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQA-LSMDELEG--HEFDLIINATSSGIS 193 (271)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEE-CCSGGGTT--CCCSEEEECCSCGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccC--CeeE-ecHHHhcc--CCCCEEEECCCCCCC
Confidence 357999999999999999999999999999999999888776532110 1222 23334331 349999999987643
Q ss_pred HHHHHHHHh-hhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 83 VDQTIKTLS-VYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 83 v~~vl~~l~-~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
..+ ..+. ..+.++.+++|.+... ..+. +.+..+++|..
T Consensus 194 -~~~-~~i~~~~l~~~~~v~D~~y~p-~~t~-~~~~a~~~G~~ 232 (271)
T 1nyt_A 194 -GDI-PAIPSSLIHPGIYCYDMFYQK-GKTP-FLAWCEQRGSK 232 (271)
T ss_dssp -TCC-CCCCGGGCCTTCEEEESCCCS-SCCH-HHHHHHHTTCC
T ss_pred -CCC-CCCCHHHcCCCCEEEEeccCC-cCCH-HHHHHHHcCCC
Confidence 111 0111 2356889999998864 4443 44556777765
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.04 E-value=3.9e-06 Score=81.22 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=78.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||+|.||.+++..|++.|. +|+++||++++.+++.+... .....++. . ..+|+||.++|.+..
T Consensus 120 ~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~------~~~~~~~~--~---~~~DivInaTp~gm~ 188 (271)
T 1npy_A 120 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE--N---QQADILVNVTSIGMK 188 (271)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT--T---CCCSEEEECSSTTCT
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcC------Cccchhhh--c---ccCCEEEECCCCCcc
Confidence 479999999999999999999997 89999999999888876532 11222222 2 349999999998742
Q ss_pred HH---HHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VD---QTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~---~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.. +.. .+ ...+.++.+++|.... |..| .+.+..+++|..+++..
T Consensus 189 ~~~~~~~~-~~~~~~l~~~~~v~DlvY~-P~~T-~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 189 GGKEEMDL-AFPKAFIDNASVAFDVVAM-PVET-PFIRYAQARGKQTISGA 236 (271)
T ss_dssp TSTTTTSC-SSCHHHHHHCSEEEECCCS-SSSC-HHHHHHHHTTCEEECHH
T ss_pred CccccCCC-CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCCCEEECCH
Confidence 11 000 01 1224468899999874 4455 66677788898877654
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=79.62 Aligned_cols=89 Identities=15% Similarity=0.387 Sum_probs=65.2
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+++||+|||+|.||..++..+.+. +.+ |.++|+++++ .+. . ++..++++++++. .+|+|++|+|
T Consensus 1 M~~irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-----~---gv~~~~d~~~ll~---~~DvViiatp 67 (320)
T 1f06_A 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-----T---PVFDVADVDKHAD---DVDVLFLCMG 67 (320)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-----S---CEEEGGGGGGTTT---TCSEEEECSC
T ss_pred CCCCEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-----C---CCceeCCHHHHhc---CCCEEEEcCC
Confidence 7778999999999999999999887 455 4688998655 221 1 3556677777764 3999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+..+.+.+. ..++.|..+++....
T Consensus 68 ~~~h~~~~~----~al~aG~~Vv~ekp~ 91 (320)
T 1f06_A 68 SATDIPEQA----PKFAQFACTVDTYDN 91 (320)
T ss_dssp TTTHHHHHH----HHHTTTSEEECCCCC
T ss_pred cHHHHHHHH----HHHHCCCEEEECCCC
Confidence 876544443 445567777776654
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=81.63 Aligned_cols=74 Identities=14% Similarity=0.267 Sum_probs=54.4
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCChhHHHHHHHHhh----hcC-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTTSKVDETVERAK----QEG-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~~~~~~~~~~~~----~~~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
+||+|||.|.+ |.++|..|+.. +.+|.+||+++++++....... ..+ ..++..++++++.++. +|+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~---AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcC---CCE
Confidence 48999999998 66688788887 6789999999988665432111 000 1146666788777776 999
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
||+++|.+
T Consensus 106 VViaag~~ 113 (472)
T 1u8x_X 106 VMAHIRVG 113 (472)
T ss_dssp EEECCCTT
T ss_pred EEEcCCCc
Confidence 99999885
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=7.1e-06 Score=83.29 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=68.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-e---ecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-Y---GFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~---~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|+|||+|.+|..+++.+...|.+|+++|+++++.+.+.+.... .+ . ...++++++.. +|+||.+++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~----~~~~~~~~~~~l~~~l~~---aDvVi~~~~~ 241 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCG----RIHTRYSSAYELEGAVKR---ADLVIGAVLV 241 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SSEEEECCHHHHHHHHHH---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCC----eeEeccCCHHHHHHHHcC---CCEEEECCCc
Confidence 589999999999999999999999999999999988776653321 11 1 12234555555 9999998864
Q ss_pred Cch-HHHH-HHHHhhhcCCCCEEEecCC
Q 011501 80 GSP-VDQT-IKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~~-v~~v-l~~l~~~l~~g~iiId~st 105 (484)
+.. ...+ .++..+.+++|.+|||.+.
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va~ 269 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIAI 269 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEec
Confidence 421 1111 2445567888999999883
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=8.1e-06 Score=83.21 Aligned_cols=90 Identities=8% Similarity=0.085 Sum_probs=69.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|+|+|.+|..+|+.|...|.+|+++|+++.+.......+ +. ..++++++.. +|+|++|..+.
T Consensus 221 ktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G-------~~-v~~Leeal~~---ADIVi~atgt~--- 286 (435)
T 3gvp_A 221 KQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDG-------FR-LVKLNEVIRQ---VDIVITCTGNK--- 286 (435)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCS---
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcC-------CE-eccHHHHHhc---CCEEEECCCCc---
Confidence 5899999999999999999999999999999987654433322 22 3578888877 99999973322
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~ 108 (484)
.++ .+....+++|.+||+++...+
T Consensus 287 -~lI~~e~l~~MK~gailINvgrg~~ 311 (435)
T 3gvp_A 287 -NVVTREHLDRMKNSCIVCNMGHSNT 311 (435)
T ss_dssp -CSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred -ccCCHHHHHhcCCCcEEEEecCCCc
Confidence 233 255667889999999998764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.2e-05 Score=80.20 Aligned_cols=90 Identities=10% Similarity=0.012 Sum_probs=70.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++++|||+|.+|..+|+.+...|.+|+++|+++.+.......+ +. ..+++++++. +|+|++++++..
T Consensus 248 KTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G-------~~-vv~LeElL~~---ADIVv~atgt~~-- 314 (464)
T 3n58_A 248 KVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDG-------FE-VVTLDDAAST---ADIVVTTTGNKD-- 314 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CE-ECCHHHHGGG---CSEEEECCSSSS--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcC-------ce-eccHHHHHhh---CCEEEECCCCcc--
Confidence 5899999999999999999999999999999987654433222 33 3478888887 999999875432
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCCh
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~ 108 (484)
++ .+.+..+++|.+||+++....
T Consensus 315 --lI~~e~l~~MK~GAILINvGRgdv 338 (464)
T 3n58_A 315 --VITIDHMRKMKDMCIVGNIGHFDN 338 (464)
T ss_dssp --SBCHHHHHHSCTTEEEEECSSSTT
T ss_pred --ccCHHHHhcCCCCeEEEEcCCCCc
Confidence 23 345567889999999988753
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=77.46 Aligned_cols=95 Identities=14% Similarity=0.157 Sum_probs=64.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhH---HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSK---VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~---~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++||+|||+|.||..+|..|+.+|+ +|.++|++++. ..++..... .+++.+.++++ ++. +|+||+++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~----~~i~~t~d~~~-l~~---aD~Vi~aa 85 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNL----PNVEISKDLSA-SAH---SKVVIFTV 85 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTC----TTEEEESCGGG-GTT---CSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcC----CCeEEeCCHHH-HCC---CCEEEEcC
Confidence 4689999999999999999999998 99999999852 222222111 14666667633 444 99999997
Q ss_pred CCCc--------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGS--------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~--------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..+. .+.++++.+..+. ++.++|..||.
T Consensus 86 g~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~sNP 127 (303)
T 2i6t_A 86 NSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVASQP 127 (303)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcCCh
Confidence 3321 1345556666665 77788888884
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.97 E-value=3.9e-05 Score=77.76 Aligned_cols=115 Identities=13% Similarity=0.166 Sum_probs=81.5
Q ss_pred CCeEEEEc-ccHHHHH-HH----HHHHhCC-CcE----------EEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHH
Q 011501 3 QTRIGLAG-LAVMGQN-LA----LNIAEKG-FPI----------SVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFV 64 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~-lA----~~L~~~G-~~V----------~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~ 64 (484)
++|||||| +|.||.. .+ ..+.+.+ ..+ .++|+++++.+.+.+... + ..++++++++
T Consensus 6 ~irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~------~~~~~~~~~~ll 79 (383)
T 3oqb_A 6 RLGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFN------IARWTTDLDAAL 79 (383)
T ss_dssp EEEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTT------CCCEESCHHHHH
T ss_pred eeEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhC------CCcccCCHHHHh
Confidence 35899999 9999998 66 6666554 222 499999999988876542 3 4678999998
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEE-ec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCII-DG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiI-d~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+. ...|+|++|+|+..+.+.+... +..|+-|+ +. -.....+..++.+..++.|+.+.-+
T Consensus 80 ~~-~~iD~V~i~tp~~~h~~~~~~a----l~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~ 140 (383)
T 3oqb_A 80 AD-KNDTMFFDAATTQARPGLLTQA----INAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTV 140 (383)
T ss_dssp HC-SSCCEEEECSCSSSSHHHHHHH----HTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred cC-CCCCEEEECCCchHHHHHHHHH----HHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 75 3489999999998776655433 34455444 32 1345577888888888888755433
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.94 E-value=7.1e-05 Score=74.69 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=54.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc-C-CCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE-G-NLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~-~-~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|.++||+|||+ |.+|.++|..++..|. +|.++|+++++++......... . ..++...++..+.++. +|+||+
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~d---ADvVvi 82 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTD---AKYIVS 82 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTT---EEEEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCC---CCEEEE
Confidence 45679999998 9999999999999884 8999999988765422211110 0 1135556777776666 999999
Q ss_pred ecCC
Q 011501 76 LVKA 79 (484)
Q Consensus 76 ~vp~ 79 (484)
+...
T Consensus 83 taG~ 86 (343)
T 3fi9_A 83 SGGA 86 (343)
T ss_dssp CCC-
T ss_pred ccCC
Confidence 8743
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.93 E-value=5e-05 Score=79.09 Aligned_cols=117 Identities=11% Similarity=0.132 Sum_probs=79.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+++|.|+|+|.+|..++..|++. |++|+++||++++.+++.+... ..... ..+.+++.+.++.+|+||.|+|.
T Consensus 23 ~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~----~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~ 98 (467)
T 2axq_A 23 GKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSG----SKAISLDVTDDSALDKVLADNDVVISLIPY 98 (467)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGT----CEEEECCTTCHHHHHHHHHTSSEEEECSCG
T ss_pred CCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcC----CcEEEEecCCHHHHHHHHcCCCEEEECCch
Confidence 45799999999999999999998 7899999999999888765411 01111 12333333323349999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... ..+... .+..|..++|.+...| .+..+.+.+++.|+.+++.
T Consensus 99 ~~~-~~v~~a---~l~~g~~vvd~~~~~p-~~~~Ll~~Ak~aGv~~i~g 142 (467)
T 2axq_A 99 TFH-PNVVKS---AIRTKTDVVTSSYISP-ALRELEPEIVKAGITVMNE 142 (467)
T ss_dssp GGH-HHHHHH---HHHHTCEEEECSCCCH-HHHHHHHHHHHHTCEEECS
T ss_pred hhh-HHHHHH---HHhcCCEEEEeecCCH-HHHHHHHHHHHcCCEEEec
Confidence 632 233322 3446788899876554 4456667777788876654
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-05 Score=81.36 Aligned_cols=86 Identities=27% Similarity=0.470 Sum_probs=63.3
Q ss_pred CCCCHHHHHHHHHhhccCc-chhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHH
Q 011501 211 GKLSNEELQQVFSEWNKGE-LLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLD 289 (484)
Q Consensus 211 g~~~~~~i~~~~~~~~~g~-~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~ 289 (484)
| ++.+++.++ |+.|. +.||+++++.+++..+. . ++.+.+.+.++++|+|+++.|.+.|+|+|++++|++
T Consensus 259 ~-~d~~~i~~~---~~~g~~~~s~~l~~~~~~~~~~p----~--~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~al~ 328 (358)
T 4e21_A 259 D-LDLADITEV---WRRGSVISSWLLDLSATALLDSP----D--LQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSALY 328 (358)
T ss_dssp C-CCHHHHHHH---HTTTSTTCBHHHHHHHHHHHHCT----T--CTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred C-CCHHHHHHH---HhCccHHHHHHHHHHHHHHhhCC----C--hHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHHHH
Confidence 5 788777555 78876 79999999988887532 1 122344555678999999999999999999999999
Q ss_pred HHHHhcCchHHHHHHHhcc
Q 011501 290 ARFLSGLKEERVEAAKVFR 308 (484)
Q Consensus 290 ~r~~s~~~~~r~~~~~~~~ 308 (484)
.|+.|. .+|..+.++++
T Consensus 329 ~~~~s~--~~~~~~~~l~~ 345 (358)
T 4e21_A 329 ERFSSR--GEDDFANRLLS 345 (358)
T ss_dssp HHHHHT--TTTHHHHHHHH
T ss_pred HHHHHC--CCcccHHHHHH
Confidence 999994 44554444443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=2.6e-05 Score=79.85 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=65.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||+|.||..+++.|...|. +|+++||++++.+++.+.... ......++.+.+.. +|+||.++|.+..
T Consensus 168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~----~~~~~~~l~~~l~~---aDvVi~at~~~~~ 240 (404)
T 1gpj_A 168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPHP 240 (404)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSSC
T ss_pred CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC----ceecHHhHHHHhcC---CCEEEEccCCCCc
Confidence 589999999999999999999998 899999999987666554321 11112455666655 9999999987754
Q ss_pred HH--HHHHH-Hhh-hcCCCCEEEecCC
Q 011501 83 VD--QTIKT-LSV-YMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~--~vl~~-l~~-~l~~g~iiId~st 105 (484)
+. ..+.. ++. .-.++.+++|.+.
T Consensus 241 ~~~~~~l~~~~lk~r~~~~~v~vdia~ 267 (404)
T 1gpj_A 241 VIHVDDVREALRKRDRRSPILIIDIAN 267 (404)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred eecHHHHHHHHHhccCCCCEEEEEccC
Confidence 32 33333 211 1124456777763
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=4.7e-05 Score=78.11 Aligned_cols=115 Identities=13% Similarity=0.123 Sum_probs=75.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
++|.|+|+|.+|..+++.|.+.|++|++.|+++++++.+.+.+.. -+.+..+-.+++. .++++|+||++++++.
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~----vi~GDat~~~~L~~agi~~A~~viv~~~~~~ 80 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMK----VFYGDATRMDLLESAGAAKAEVLINAIDDPQ 80 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCC----CEESCTTCHHHHHHTTTTTCSEEEECCSSHH
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCe----EEEcCCCCHHHHHhcCCCccCEEEECCCChH
Confidence 579999999999999999999999999999999999888765421 1222223334433 2567999999998864
Q ss_pred hHHHHHHHHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
....++ ..+..+.+. .+|+-..+ + .....+...|+..+-.|
T Consensus 81 ~n~~i~-~~ar~~~p~~~Iiara~~--~----~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 81 TNLQLT-EMVKEHFPHLQIIARARD--V----DHYIRLRQAGVEKPERE 122 (413)
T ss_dssp HHHHHH-HHHHHHCTTCEEEEEESS--H----HHHHHHHHTTCSSCEET
T ss_pred HHHHHH-HHHHHhCCCCeEEEEECC--H----HHHHHHHHCCCCEEECc
Confidence 333333 333444455 44443332 1 22344556676654444
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=7.5e-05 Score=74.06 Aligned_cols=99 Identities=10% Similarity=0.128 Sum_probs=64.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHH----HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDE----TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~----~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++. +....... +.+++...+..+.++. +|+||++
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~-~~~v~i~~~~~~a~~~---aDvVvi~ 80 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFA-PQPVKTSYGTYEDCKD---ADIVCIC 80 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGS-SSCCEEEEECGGGGTT---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccc-cCCeEEEeCcHHHhCC---CCEEEEe
Confidence 4699999999999999999999987 89999999988765 33211100 0022333333344444 9999999
Q ss_pred cCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
...+. . ++++.+.+..+ .++.+++..||-
T Consensus 81 ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~-~p~a~vlvvtNP 124 (326)
T 3pqe_A 81 AGANQKPGETRLELVEKNLKIFKGIVSEVMAS-GFDGIFLVATNP 124 (326)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred cccCCCCCccHHHHHHHHHHHHHHHHHHHHHh-cCCeEEEEcCCh
Confidence 85432 1 22333445554 467788888863
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.9e-05 Score=80.71 Aligned_cols=91 Identities=11% Similarity=0.131 Sum_probs=65.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecC-------------------------
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFH------------------------- 58 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 58 (484)
.+|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.+. ..+.
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 245 (401)
T 1x13_A 173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA-------EFLELDFKEEAGSGDGYAKVMSDAFIKAE 245 (401)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTC-------EECCC--------CCHHHHHHSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC-------EEEEecccccccccccchhhccHHHHHHH
Confidence 58999999999999999999999999999999998777654332 1111
Q ss_pred --CHhHHHhhcCCCcEEEEe--cCCCchHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 59 --DPESFVHSIQKPRVIIML--VKAGSPVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 59 --s~~e~~~~l~~advIi~~--vp~~~~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
++++++.. +|+||.+ +|... ...++ ++.+..+++|.+|||++.
T Consensus 246 ~~~l~e~~~~---aDvVI~~~~~pg~~-ap~li~~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 246 MELFAAQAKE---VDIIVTTALIPGKP-APKLITREMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp HHHHHHHHHH---CSEEEECCCCTTSC-CCCCBCHHHHHTSCTTCEEEETTG
T ss_pred HHHHHHHhCC---CCEEEECCccCCCC-CCeeeCHHHHhcCCCCcEEEEEcC
Confidence 24455555 9999999 44211 11111 344556788999999884
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=75.19 Aligned_cols=99 Identities=9% Similarity=0.060 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhh----cCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQ----EGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~----~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++........ ....++....++++ ++. +|+||++
T Consensus 21 ~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~d---aDiVIit 96 (330)
T 3ldh_A 21 YNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAG---SKLVVIT 96 (330)
T ss_dssp CCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSS---CSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCC---CCEEEEe
Confidence 3689999999999999999999997 899999999876553321111 00002445566665 444 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
...+. .++++.+.+..+ .++.+++..||-
T Consensus 97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvtNP 140 (330)
T 3ldh_A 97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHPEL 140 (330)
T ss_dssp CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCCCc
Confidence 75442 234555666666 577888888864
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.6e-05 Score=74.87 Aligned_cols=117 Identities=16% Similarity=0.156 Sum_probs=79.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcC-CCCeeecC--CHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEG-NLPLYGFH--DPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~~~--s~~e~~~~l~~advIi~~vp~ 79 (484)
+++.|+|.|.+|.+++..|++.|. +|+++||++++.+++.+...... ...+...+ ++.+.+.. +|+||-++|.
T Consensus 128 k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~---~DiVInaTp~ 204 (283)
T 3jyo_A 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAA---ADGVVNATPM 204 (283)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHH---SSEEEECSST
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhc---CCEEEECCCC
Confidence 579999999999999999999998 69999999999888765543210 01233333 66666666 9999999997
Q ss_pred CchHHH--HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQ--TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~--vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+..-.. .+ -...++++.+|+|.--.+ ..| .+.+..+++|...++
T Consensus 205 Gm~~~~~~pi--~~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 205 GMPAHPGTAF--DVSCLTKDHWVGDVVYMP-IET-ELLKAARALGCETLD 250 (283)
T ss_dssp TSTTSCSCSS--CGGGCCTTCEEEECCCSS-SSC-HHHHHHHHHTCCEEC
T ss_pred CCCCCCCCCC--CHHHhCCCCEEEEecCCC-CCC-HHHHHHHHCcCeEeC
Confidence 522110 01 123567889999987654 333 334455666765543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00011 Score=72.30 Aligned_cols=96 Identities=15% Similarity=0.245 Sum_probs=66.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----c-CCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----E-GNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~-~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
||+|||+|.||.+++..|+..|+ +|.++|+++++++........ . ...+++.+.+.+ .++. +|+||++.+
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~-a~~~---aD~Vi~~ag 76 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE-DMRG---SDIVLVTAG 76 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG-GGTT---CSEEEECCS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH-HhCC---CCEEEEeCC
Confidence 69999999999999999998888 699999998876543222111 0 011355545653 3444 999999976
Q ss_pred CCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 79 AGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 79 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.+. .++++++.+..+. ++.++|..||
T Consensus 77 ~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~tN 117 (308)
T 2d4a_B 77 IGRKPGMTREQLLEANANTMADLAEKIKAYA-KDAIVVITTN 117 (308)
T ss_dssp CCCCSSCCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECCS
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 653 1455556666664 6667777776
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.8e-05 Score=75.08 Aligned_cols=111 Identities=10% Similarity=0.173 Sum_probs=78.0
Q ss_pred CCCCeEEEEcccHHHH-HHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAGLAVMGQ-NLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~-~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|.++||||||+|.||. ..+..|.+. +.+| .++|+++++ . ++..+++++++++.....|+|++|+
T Consensus 23 M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~-------g~~~~~~~~~ll~~~~~vD~V~i~t 89 (330)
T 4ew6_A 23 MSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------E-------GVNSYTTIEAMLDAEPSIDAVSLCM 89 (330)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------T-------TSEEESSHHHHHHHCTTCCEEEECS
T ss_pred CCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------c-------CCCccCCHHHHHhCCCCCCEEEEeC
Confidence 4456899999999998 788888876 5664 578998653 1 3567899999987534589999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+..+.+.+...+ ..|+ ++++. -+....+.+++.+..+++|+.+..+
T Consensus 90 p~~~H~~~~~~al----~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~ 138 (330)
T 4ew6_A 90 PPQYRYEAAYKAL----VAGKHVFLEKPPGATLSEVADLEALANKQGASLFAS 138 (330)
T ss_dssp CHHHHHHHHHHHH----HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred CcHHHHHHHHHHH----HcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 9876554443333 3454 44443 1345677778888888888765543
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=4.2e-05 Score=74.60 Aligned_cols=112 Identities=17% Similarity=0.064 Sum_probs=75.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
..||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +.. +++..+.|++++.+. ..+|++++++|+.
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g---~~~-----~G~~vy~sl~el~~~-~~~D~viI~tP~~- 75 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGG---TTH-----LGLPVFNTVREAVAA-TGATASVIYVPAP- 75 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE-----TTEEEESSHHHHHHH-HCCCEEEECCCGG-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCccc---cee-----CCeeccCCHHHHhhc-CCCCEEEEecCHH-
Confidence 468999998 99999999999998998 44444443210 000 146788899999871 1299999999997
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i~ 127 (484)
...+++.+.... .. ..+|..++. ...+.+++.+.+++.|+.+++
T Consensus 76 ~~~~~~~ea~~~-Gi-~~iVi~t~G~~~~~~~~l~~~A~~~gv~liG 120 (288)
T 2nu8_A 76 FCKDSILEAIDA-GI-KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 120 (288)
T ss_dssp GHHHHHHHHHHT-TC-SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 455555555442 11 333444443 444566777777888987764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.85 E-value=2e-05 Score=76.19 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=78.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|+|+|.+|.+++..|++.|. +|+++||++++.+++.+.... + ++.. .+.+++.. ..+|+||.++|.+..
T Consensus 121 k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~-~--~~~~-~~~~~l~~--~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 121 RRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH-S--RLRI-SRYEALEG--QSFDIVVNATSASLT 194 (272)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC-T--TEEE-ECSGGGTT--CCCSEEEECSSGGGG
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc-C--CeeE-eeHHHhcc--cCCCEEEECCCCCCC
Confidence 579999999999999999999996 999999999999888776431 0 1222 23344331 349999999987632
Q ss_pred HHH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe-EEe
Q 011501 83 VDQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL-YLG 127 (484)
Q Consensus 83 v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~-~i~ 127 (484)
-+. .+ -...+.++.+|+|+... |..|. +.+..+++|.. .++
T Consensus 195 ~~~~~i--~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 237 (272)
T 3pwz_A 195 ADLPPL--PADVLGEAALAYELAYG-KGLTP-FLRLAREQGQARLAD 237 (272)
T ss_dssp TCCCCC--CGGGGTTCSEEEESSCS-CCSCH-HHHHHHHHSCCEEEC
T ss_pred CCCCCC--CHHHhCcCCEEEEeecC-CCCCH-HHHHHHHCCCCEEEC
Confidence 110 01 01346789999999876 44443 55566777875 443
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.85 E-value=5.8e-05 Score=74.66 Aligned_cols=116 Identities=14% Similarity=0.001 Sum_probs=80.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--------hcCCCcE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--------SIQKPRV 72 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--------~l~~adv 72 (484)
|+||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+... ....+++.+++.+ .-...|+
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISP-----QSEFFTEFEFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESSHHHHHHHHHHHTTSTTTSCCE
T ss_pred ceEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCcEECCHHHHHHhhhhhhhccCCCCcE
Confidence 579999999 79999999999998876 45789998762 2222111 3577889999873 1135899
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|++++|+..+.+.+...+... ..++++. -+..+.+.+++.+..+++|+.+..
T Consensus 77 V~I~tP~~~H~~~~~~al~aG---khVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 129 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLRLG---CDVICEKPLVPTPEMLDQLAVIERETDKRLYN 129 (318)
T ss_dssp EEECSCGGGHHHHHHHHHHTT---CEEEECSSCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred EEECCCcHHHHHHHHHHHHCC---CeEEEECCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 999999987766555444332 2355553 234567888888888888876543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.8e-05 Score=78.68 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=66.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+|+|+|.+|..+++.+...|.+|+++|+++++.+.+.+.... .+.. ..++++++.. +|+||.+++.
T Consensus 167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~----~~~~~~~~~~~l~~~~~~---~DvVi~~~g~ 239 (369)
T 2eez_A 167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGG----RVITLTATEANIKKSVQH---ADLLIGAVLV 239 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTT----SEEEEECCHHHHHHHHHH---CSEEEECCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCc----eEEEecCCHHHHHHHHhC---CCEEEECCCC
Confidence 589999999999999999999999999999999988776553321 1111 1234455555 9999999976
Q ss_pred Cc-hHHHH-HHHHhhhcCCCCEEEecCC
Q 011501 80 GS-PVDQT-IKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~-~v~~v-l~~l~~~l~~g~iiId~st 105 (484)
+. ....+ .+...+.+++|.+|||.+.
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC-
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEec
Confidence 52 11111 2455677788999999884
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.85 E-value=8.2e-05 Score=73.37 Aligned_cols=98 Identities=13% Similarity=0.110 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHH----HHHhhhc-CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDET----VERAKQE-GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~----~~~~~~~-~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.||.++|..|+..|+ +|.++|+++++++.. .+..... ...++..+++ .+.++. +|+||++
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~---aDvVii~ 76 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTED---SDVCIIT 76 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTT---CSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCC---CCEEEEC
Confidence 589999999999999999999887 899999999876532 2211100 0001222333 344444 9999999
Q ss_pred cCCCch---------------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGSP---------------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.+.. ++++.+.+..+ .+..+++..||-
T Consensus 77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~-~p~a~vivvtNP 120 (314)
T 3nep_X 77 AGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEG-SPDSTIIVVANP 120 (314)
T ss_dssp CCC-------CHHHHHHHHHHHHHHHHHHHTT-CTTCEEEECCSS
T ss_pred CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEecCCc
Confidence 865421 22333445554 467788888864
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00013 Score=74.95 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=75.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCc-EEEEeCChhHHHHHHHHh-h------------------hcCCCCeeecCCHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFP-ISVYNRTTSKVDETVERA-K------------------QEGNLPLYGFHDPE 61 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~-V~v~dr~~~~~~~~~~~~-~------------------~~~~~~~~~~~s~~ 61 (484)
+.||||||+|.||..++..+.+. +.+ |.++|+++++.+.+.++. . ..+ ....++|.+
T Consensus 23 ~IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g--~~~v~~D~e 100 (446)
T 3upl_A 23 PIRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAG--KIAVTDDND 100 (446)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTT--CEEEESCHH
T ss_pred ceEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccC--CceEECCHH
Confidence 35899999999999999888764 444 557899999988876532 1 000 245678999
Q ss_pred HHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEE
Q 011501 62 SFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 62 e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i 126 (484)
++++. ...|+|++++|.+..-. +-....++.|+-|+..... ......++.+..++.|+.|.
T Consensus 101 eLL~d-~dIDaVviaTp~p~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~ 162 (446)
T 3upl_A 101 LILSN-PLIDVIIDATGIPEVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS 162 (446)
T ss_dssp HHHTC-TTCCEEEECSCCHHHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHhcC-CCCCEEEEcCCChHHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee
Confidence 99874 34799999998752212 2223345567777643321 01123345555566676554
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00017 Score=70.64 Aligned_cols=105 Identities=9% Similarity=0.008 Sum_probs=78.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.++++++|+++|.+.++.|++++|++.+.++ +++|..++.++|+.|. .+|+.++........++..+.
T Consensus 167 ~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~------~Gld~~~~~~~l~~~~-~~s~~~~~~~~~~~~~~~~p~----- 234 (297)
T 4gbj_A 167 PGAANVIKLAGNFMIACSLEMMGEAFTMAEK------NGISRQSIYEMLTSTL-FAAPIFQNYGKLVASNTYEPV----- 234 (297)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------TTCCHHHHHHHHHTTT-TCSHHHHHHHHHHHHTCCCSC-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHhhc-ccCchhhccCccccCCCCCCc-----
Confidence 4789999999999999999999999999875 3499999999999884 688888776555444321110
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
-|.-.+ ..-+++-++..|-+.|+|+|....+..+|..
T Consensus 235 ~f~~~l--~~KDl~l~~~~A~~~g~~~p~~~~~~~~~~~ 271 (297)
T 4gbj_A 235 AFRFPL--GLKDINLTLQTASDVNAPMPFADIIRNRFIS 271 (297)
T ss_dssp SSBHHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cchhHH--HHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 121111 2235677889999999999999888876653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=71.64 Aligned_cols=99 Identities=11% Similarity=0.158 Sum_probs=63.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc--CCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE--GNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~--~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+||+|||+|.+|.+++..|+..+. ++.++|+++++++......... ...+++...+..+.++. +|+||++.+.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKD---ADLVVITAGA 82 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTT---CSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEECCCC
Confidence 699999999999999999998876 8999999998876533322110 00022233333444444 9999999865
Q ss_pred Cc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. .++++.+.+..+ .++.+|+..||-
T Consensus 83 ~~~~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 123 (318)
T 1ez4_A 83 PQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (318)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEeCCc
Confidence 52 133333455555 466777777553
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6.9e-05 Score=73.90 Aligned_cols=115 Identities=18% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh-------hcCCCcEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH-------SIQKPRVI 73 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~-------~l~~advI 73 (484)
|+||||||+ |.||...+..+.+.+.+ |.++|+++++. .+.+... ....+++.+++.+ .-...|+|
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~-----~~~~~~~~~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFP-----EAEFFTEPEAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCT-----TCEEESCHHHHHHHHHHHHHTTCCCSEE
T ss_pred ceEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCC-----CCceeCCHHHHHHHhhhhcccCCCCcEE
Confidence 579999999 78999999999998876 45789998763 2222111 3577889999872 11458999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEe
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
++|+|+..+.+.+...+. .|+ ++++. -+....+.+++.+..+++|+.+..
T Consensus 77 ~I~tP~~~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 128 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMALR----LGANALSEKPLVLWPEEIARLKELEARTGRRVYT 128 (312)
T ss_dssp EECSCGGGHHHHHHHHHH----TTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred EECCCchhhHHHHHHHHH----CCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 999999877665544443 344 55553 234567888888888888876543
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.9e-05 Score=74.85 Aligned_cols=125 Identities=14% Similarity=0.160 Sum_probs=77.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC---------CCcE-EEEeCChhHHH-----H-HHHHhhhcCCCCeeecC--CHhHHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK---------GFPI-SVYNRTTSKVD-----E-TVERAKQEGNLPLYGFH--DPESFV 64 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~---------G~~V-~v~dr~~~~~~-----~-~~~~~~~~~~~~~~~~~--s~~e~~ 64 (484)
|+||||||+|.||..++..|.++ +.+| .++|+++.+.+ . +...... ...++ ++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~-----~~~~~~~d~~~ll 76 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRET-----GMLRDDAKAIEVV 76 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHH-----SSCSBCCCHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccC-----ccccCCCCHHHHh
Confidence 46999999999999999999875 4444 46788865422 1 2111111 12344 899998
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEE-eccCCCC
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYL-GMGVSGG 133 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i-~~pv~gg 133 (484)
+. ...|+|+.|+|+..+..+..+.....+..|.-|+..+..... ...++.+..+++|+.|+ .+-+.++
T Consensus 77 ~~-~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~~~~ea~v~~g 146 (327)
T 3do5_A 77 RS-ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGA 146 (327)
T ss_dssp HH-SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCCEECGGGSSTT
T ss_pred cC-CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCcEEEEEEeeec
Confidence 75 348999999998754212334445667788888877553322 33455556667787654 4444443
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00021 Score=70.89 Aligned_cols=100 Identities=11% Similarity=0.128 Sum_probs=64.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc--CCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE--GNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~--~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+||+|||+|.+|.+++..|+..+. ++.++|+++++++......... ...+++...+..+.++. +|+||++.+
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~---aDvVii~ag 85 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKD---ADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGG---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCC---CCEEEEcCC
Confidence 4699999999999999999998876 8999999998876543322110 00122333344444555 999999986
Q ss_pred CCch---------------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGSP---------------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.. ++++.+.+..+ .++.+|+..||-
T Consensus 86 ~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 127 (326)
T 2zqz_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CC-----CHHHHHHHHHHHHHHHHHHHHHH-TCCSEEEECSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence 6521 22333455555 466777777553
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=6.9e-05 Score=73.24 Aligned_cols=110 Identities=12% Similarity=0.064 Sum_probs=77.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHh----CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAE----KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~----~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++||||||+|.||...+..+.+ .+.++ .++|++.. .+. +++. ..+++++++. ...|+|++++
T Consensus 7 ~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~-----a~~------~g~~-~~~~~ell~~-~~vD~V~i~t 73 (294)
T 1lc0_A 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-----GSL------DEVR-QISLEDALRS-QEIDVAYICS 73 (294)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-----CEE------TTEE-BCCHHHHHHC-SSEEEEEECS
T ss_pred cceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH-----HHH------cCCC-CCCHHHHhcC-CCCCEEEEeC
Confidence 4689999999999999998875 34554 47788642 111 1233 5799998873 2379999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
|+..+.+.+...+ +.|+ ++++. -+..+.+.+++.+..+++|+.+..+.
T Consensus 74 p~~~H~~~~~~al----~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~ 123 (294)
T 1lc0_A 74 ESSSHEDYIRQFL----QAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEH 123 (294)
T ss_dssp CGGGHHHHHHHHH----HTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CcHhHHHHHHHHH----HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEE
Confidence 9987766554433 3455 66664 45567788888888888888766554
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0002 Score=70.51 Aligned_cols=99 Identities=11% Similarity=0.198 Sum_probs=64.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcC--CCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEG--NLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~--~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|||+|||+|.+|.+++..|+..+ .++.++|+++++++.......... ..+++...+..+.++. +|+||++.+.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~---aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEG---ARAVVLAAGV 77 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---EEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCC---CCEEEECCCC
Confidence 58999999999999999999887 589999999887765333221100 0012222222333444 9999999866
Q ss_pred Cch---------------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSP---------------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~---------------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.. ++++.+.+..+ .+..+|+..||-
T Consensus 78 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~tNP 118 (310)
T 2xxj_A 78 AQRPGETRLQLLDRNAQVFAQVVPRVLEA-APEAVLLVATNP 118 (310)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred CCCCCcCHHHHHHhhHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 532 33344555555 466777777653
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00015 Score=75.03 Aligned_cols=75 Identities=11% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCeEEEEcccHH-HHHHHHHHHhC-----CCcEEEEeCCh--hHHHHHHH---Hhh-hcC-CCCeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGLAVM-GQNLALNIAEK-----GFPISVYNRTT--SKVDETVE---RAK-QEG-NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGlG~m-G~~lA~~L~~~-----G~~V~v~dr~~--~~~~~~~~---~~~-~~~-~~~~~~~~s~~e~~~~l~~ 69 (484)
.+||+|||.|.+ |.+++..|+.+ +.+|.+||+++ ++++.... ... ..+ ..+++.+++..+.++.
T Consensus 7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g--- 83 (450)
T 1s6y_A 7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG--- 83 (450)
T ss_dssp CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC---
Confidence 368999999999 88888888874 56899999999 87665321 110 000 1135666788777776
Q ss_pred CcEEEEecCCC
Q 011501 70 PRVIIMLVKAG 80 (484)
Q Consensus 70 advIi~~vp~~ 80 (484)
+|+||+++|.+
T Consensus 84 AD~VVitagv~ 94 (450)
T 1s6y_A 84 ADFVTTQFRVG 94 (450)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEcCCCC
Confidence 99999999875
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=75.63 Aligned_cols=118 Identities=15% Similarity=0.250 Sum_probs=76.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhC----------CCc-EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK----------GFP-ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~----------G~~-V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
.+|||||+|.||..++..|.++ +.+ +.++|+++++.+.+.. ....+++++++++. ...|+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------~~~~~~d~~ell~d-~diDv 81 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------GLPLTTNPFDVVDD-PEIDI 81 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------TCCEESCTHHHHTC-TTCCE
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------cCcccCCHHHHhcC-CCCCE
Confidence 4899999999999999877642 344 4578999988766521 14567899999874 34799
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
|+.++|......+.+ ...+..|.-|+..... ......++.+..+++|+.| +.+.+.++
T Consensus 82 Vve~tp~~~~h~~~~---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 82 VVELIGGLEPARELV---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp EEECCCSSTTHHHHH---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred EEEcCCCchHHHHHH---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 999999632333332 2345567777654331 1122345555666778877 35555443
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00011 Score=75.15 Aligned_cols=120 Identities=17% Similarity=0.141 Sum_probs=76.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeee----cCC---HhHHHhhcCCCcEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYG----FHD---PESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s---~~e~~~~l~~advI 73 (484)
++|+|+|+|.+|..++..|+++|. +|.++||++++.+++.+.....++.++.. ..+ ++++++.. ++|+|
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~-~~DvV 80 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV-KPQIV 80 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH-CCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh-CCCEE
Confidence 689999999999999999999983 89999999999888776543210001111 122 33344321 27999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH--------HHHHHHHHHHHcCCeEEec
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE--------NTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~--------~~~~~~~~l~~~g~~~i~~ 128 (484)
|.+.|... ...+++.. +..|..++|.+...+. ...++.+.+++.|+.++..
T Consensus 81 in~ag~~~-~~~v~~a~---l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g 139 (405)
T 4ina_A 81 LNIALPYQ-DLTIMEAC---LRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLG 139 (405)
T ss_dssp EECSCGGG-HHHHHHHH---HHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEEC
T ss_pred EECCCccc-ChHHHHHH---HHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEc
Confidence 99987653 23343333 3456778887554332 2234556666777765543
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.2e-05 Score=73.72 Aligned_cols=131 Identities=13% Similarity=0.166 Sum_probs=77.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-------CCcE-EEEeCChhH------HHHHHHHhhhcCCCCeeecCCHhHHHhh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-------GFPI-SVYNRTTSK------VDETVERAKQEGNLPLYGFHDPESFVHS 66 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-------G~~V-~v~dr~~~~------~~~~~~~~~~~~~~~~~~~~s~~e~~~~ 66 (484)
|.+.+|+|||+|.||+.++..|.++ +.+| .++|++++. .+.+.+.....+...-... +..+++..
T Consensus 2 Mk~irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~-d~~e~l~~ 80 (325)
T 3ing_A 2 MKEIRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAF-SGPEDLMG 80 (325)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBC-CSGGGGTT
T ss_pred CceEEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccC-CHHHHhcC
Confidence 5567899999999999999999874 3344 466887642 1222211111000000012 66676654
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
...|+|+.|+|+....+...+.....+..|.-||.++.... ....++.+..+++|..| +++.+.+|
T Consensus 81 -~~iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~g 148 (325)
T 3ing_A 81 -EAADLLVDCTPASRDGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGG 148 (325)
T ss_dssp -SCCSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred -CCCCEEEECCCCccccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeeccc
Confidence 34899999999864444444555566778888887766322 23445555566678755 44555544
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00031 Score=69.67 Aligned_cols=99 Identities=14% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc----CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE----GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~----~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.||.++|..|+.+|+ +|.++|+++++++......... ....+....++++ ++. +|+||++
T Consensus 19 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~~-~~~---aDiVvi~ 94 (331)
T 4aj2_A 19 QNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYSV-TAN---SKLVIIT 94 (331)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGGG-GTT---EEEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHHH-hCC---CCEEEEc
Confidence 4799999999999999999999997 8999999988766533222110 0002334556654 444 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
...+. .++++.+.+..+ .++.+++..||-
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 138 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKY-SPQCKLLIVSNP 138 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSS
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEecCh
Confidence 74331 133444556665 567788888864
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.9e-05 Score=72.55 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=75.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC----CeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL----PLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~----~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+++.|+|.|.+|.++|..|++.| +|+++||++++.+++.+.....+.. .+... +.. +.+.++|+||.++|
T Consensus 128 ~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~-~~~---~~~~~~DilVn~ag 202 (287)
T 1nvt_A 128 DKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFS-GLD---VDLDGVDIIINATP 202 (287)
T ss_dssp SCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEE-CTT---CCCTTCCEEEECSC
T ss_pred CCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEe-eHH---HhhCCCCEEEECCC
Confidence 357999999999999999999999 9999999999887776543210000 01111 222 23345999999998
Q ss_pred CCchH--HHH-HHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 79 AGSPV--DQT-IKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 79 ~~~~v--~~v-l~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+..- +.. +. -...++++.+++|++.. |..+ .+.+..+++|..++
T Consensus 203 ~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~y~-p~~t-~ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 203 IGMYPNIDVEPIV-KAEKLREDMVVMDLIYN-PLET-VLLKEAKKVNAKTI 250 (287)
T ss_dssp TTCTTCCSSCCSS-CSTTCCSSSEEEECCCS-SSSC-HHHHHHHTTTCEEE
T ss_pred CCCCCCCCCCCCC-CHHHcCCCCEEEEeeeC-CccC-HHHHHHHHCCCEEe
Confidence 76321 000 00 12356789999999874 4444 34555666777654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00026 Score=70.13 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=65.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCC--CCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGN--LPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~--~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+||+|||+|.||.++|..|+..|+ +|.++|+++++++........... .+++...+..+.++. +|+||++..
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~---aDiVvi~ag 85 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKD---ADLVVITAG 85 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTT---CSEEEECCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcC---CCEEEECCC
Confidence 4799999999999999999999887 899999999877644322211000 023333343444444 999999875
Q ss_pred CCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+. .++++.+.+..+ .++.+++..||-
T Consensus 86 ~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~-~p~a~ilvvtNP 127 (326)
T 3vku_A 86 APQKPGETRLDLVNKNLKILKSIVDPIVDS-GFNGIFLVAANP 127 (326)
T ss_dssp CC----------------CHHHHHHHHHTT-TCCSEEEECSSS
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHhc-CCceEEEEccCc
Confidence 431 123344555554 366778877763
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.68 E-value=6.3e-05 Score=74.90 Aligned_cols=115 Identities=8% Similarity=0.097 Sum_probs=76.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++||||||+|.+|...+..| ..+.+|. ++|+++ ++.+.+.+...+. +.+...++|++++++. ...|+|++|+|+.
T Consensus 2 ~~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ll~~-~~vD~V~I~tp~~ 78 (337)
T 3ip3_A 2 SLKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEM-NIKPKKYNNWWEMLEK-EKPDILVINTVFS 78 (337)
T ss_dssp CEEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTT-TCCCEECSSHHHHHHH-HCCSEEEECSSHH
T ss_pred ceEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHc-CCCCcccCCHHHHhcC-CCCCEEEEeCCcc
Confidence 46999999999998887777 5566655 789987 4444444332111 1124678999999875 2489999999988
Q ss_pred chHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCe
Q 011501 81 SPVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~ 124 (484)
.+.+.+...+. .|+ ++++. -+....+.+++.+..++.|..
T Consensus 79 ~H~~~~~~al~----aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 79 LNGKILLEALE----RKIHAFVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp HHHHHHHHHHH----TTCEEEECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHH----CCCcEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 66555444433 444 45542 233456777888877777764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.68 E-value=9.6e-05 Score=74.44 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=68.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|+|+|.+|...++.+...|.+|+++||++++.+.+.+.+... + ....+.+++.+.+..+|+||.+++.+..
T Consensus 168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~ 243 (361)
T 1pjc_A 168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR----VELLYSNSAEIETAVAEADLLIGAVLVPGR 243 (361)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG----SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCce----eEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence 5899999999999999999999999999999999988877655321 1 1112333333333349999999976431
Q ss_pred H-HH-HHHHHhhhcCCCCEEEecCCC
Q 011501 83 V-DQ-TIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v-~~-vl~~l~~~l~~g~iiId~st~ 106 (484)
. .. +.+.....++++.+|+|.+..
T Consensus 244 ~~~~li~~~~~~~~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 244 RAPILVPASLVEQMRTGSVIVDVAVD 269 (361)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred CCCeecCHHHHhhCCCCCEEEEEecC
Confidence 0 00 012344567788888888754
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00011 Score=69.03 Aligned_cols=113 Identities=6% Similarity=-0.009 Sum_probs=73.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHh-hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVH-SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~-~l~~advIi~~vp~~~ 81 (484)
++|.|+|+|.+|..++..|.+.|+ |+++|+++++++.+. .+.. -+... ++.+.+.+ .++++|.||++++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~----~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d- 82 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESD- 82 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCE----EEESCTTCHHHHHHTTCTTCSEEEECCSCH-
T ss_pred CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCe----EEEcCCCCHHHHHhcCcchhcEEEEcCCCc-
Confidence 579999999999999999999999 999999999887765 3211 01111 23333322 256799999999886
Q ss_pred hHHHHHHHHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.....+...+..+.++ .+|...++.. .. +.+...|+..+-.|
T Consensus 83 ~~n~~~~~~a~~~~~~~~iia~~~~~~--~~----~~l~~~G~~~vi~p 125 (234)
T 2aef_A 83 SETIHCILGIRKIDESVRIIAEAERYE--NI----EQLRMAGADQVISP 125 (234)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEECSSGG--GH----HHHHHHTCSEEECH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCHh--HH----HHHHHCCCCEEECH
Confidence 3333333444445555 6777766543 22 23344577665444
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=6.7e-05 Score=76.25 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=63.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeec--CC----------------------
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGF--HD---------------------- 59 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~--~s---------------------- 59 (484)
.+|+|+|+|.+|...++.+...|.+|+++|+++++.+.+...+. ... ++
T Consensus 173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga-------~~~~i~~~~~~~~~~~~~~~~~~s~~~~~ 245 (384)
T 1l7d_A 173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG-------KFITVDDEAMKTAETAGGYAKEMGEEFRK 245 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC-------EECCC-----------------------C
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC-------eEEeecccccccccccccchhhcCHHHHh
Confidence 58999999999999999999999999999999988776655332 111 01
Q ss_pred -----HhHHHhhcCCCcEEEEecCCC-chHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 60 -----PESFVHSIQKPRVIIMLVKAG-SPVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 60 -----~~e~~~~l~~advIi~~vp~~-~~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
+.+.+. .+|+||.+++.+ .....++ ++....+++|.+|||.+.
T Consensus 246 ~~~~~l~~~~~---~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 246 KQAEAVLKELV---KTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp CHHHHHHHHHT---TCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred hhHHHHHHHhC---CCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEec
Confidence 333343 499999888221 0111111 344566788899999873
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=8.6e-05 Score=72.83 Aligned_cols=108 Identities=18% Similarity=0.072 Sum_probs=75.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcc---
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVL--- 397 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll--- 397 (484)
.++++.+|+++|.+.++.|++++|++.+.++. ++|...+.++|+.|. -+|+.++........ ..+..
T Consensus 166 ~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~------Gld~~~~~~vl~~~~-~~s~~~~~~~p~~~~---~~~~~~~~ 235 (300)
T 3obb_A 166 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN------GLEAKVLAEIMRRSS-GGNWALEVYNPWPGV---MENAPASR 235 (300)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHTST-TCCHHHHHCCCSTTT---STTSGGGG
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHhCc-ccchHHHhhccccch---hhhccccc
Confidence 47899999999999999999999999998763 499999999999874 467766532111000 00000
Q ss_pred -cchhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHhh
Q 011501 398 -VDPEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDTY 440 (484)
Q Consensus 398 -~~~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~~ 440 (484)
.++.|.-.+ ..-+++.++..|.+.|+|+|..+.+..+|...
T Consensus 236 ~~~~~f~~~l--~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a 277 (300)
T 3obb_A 236 DYSGGFMAQL--MAKDLGLAQEAAQASASSTPMGSLALSLYRLL 277 (300)
T ss_dssp TTCSSSBHHH--HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCccchHHH--HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 012222221 23456788899999999999999998866543
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.64 E-value=7.5e-05 Score=72.09 Aligned_cols=97 Identities=18% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCChhHH-----HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRTTSKV-----DETVERAKQEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
|+|+||+|+| +|.||+.+++.+.+. ++++. ++|++++.. .++.. .. .++..+++++++++. +|+
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g--~~---~gv~v~~dl~~ll~~---~DV 76 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLG--KQ---TGVALTDDIERVCAE---ADY 76 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTT--CC---CSCBCBCCHHHHHHH---CSE
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhC--CC---CCceecCCHHHHhcC---CCE
Confidence 7778999999 899999999998865 56655 479875321 01110 00 035667899998887 999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
||-++++. .+.+.+... +..|.-+|.++|....
T Consensus 77 VIDfT~p~-a~~~~~~~a---l~~G~~vVigTTG~s~ 109 (272)
T 4f3y_A 77 LIDFTLPE-GTLVHLDAA---LRHDVKLVIGTTGFSE 109 (272)
T ss_dssp EEECSCHH-HHHHHHHHH---HHHTCEEEECCCCCCH
T ss_pred EEEcCCHH-HHHHHHHHH---HHcCCCEEEECCCCCH
Confidence 99988654 444444333 4456667777776543
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00021 Score=70.40 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=77.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHHhhhcCCCCee--ecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKQEGNLPLY--GFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~~~~~~~~~~~~~~~--~~~s~~e~~~~l~~advIi~~v 77 (484)
+++.|+|.|.+|.+++..|++.|. +|++++|+ .++.+++.++.....+..+. ..++.+++.+.+..+|+||-++
T Consensus 155 k~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaT 234 (315)
T 3tnl_A 155 KKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNAT 234 (315)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECc
Confidence 578999999999999999999998 89999999 88888776553321000111 2233333332233499999999
Q ss_pred CCCchHH--H-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 78 KAGSPVD--Q-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 78 p~~~~v~--~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|.+-.-. . .+. ....++++.+|+|.--.+. .| .+.+..+++|...++
T Consensus 235 p~Gm~~~~~~~p~~-~~~~l~~~~~V~DlvY~P~-~T-~ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 235 GVGMKPFEGETLLP-SADMLRPELIVSDVVYKPT-KT-RLLEIAEEQGCQTLN 284 (315)
T ss_dssp STTSTTSTTCCSCC-CGGGCCTTCEEEESCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred cCCCCCCCCCCCCC-cHHHcCCCCEEEEeccCCC-CC-HHHHHHHHCCCeEeC
Confidence 9762211 0 000 1234678899999876543 33 344555677776543
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00014 Score=70.84 Aligned_cols=112 Identities=16% Similarity=0.085 Sum_probs=75.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+||+|+|+ |.||..+++++.+.|++ .++..+|.+.. +.. .++..+.+++++.+.. .+|++++++|+.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~-~v~~VnP~~~g---~~i-----~G~~vy~sl~el~~~~-~~Dv~Ii~vp~~- 75 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTK-IVAGVTPGKGG---MEV-----LGVPVYDTVKEAVAHH-EVDASIIFVPAP- 75 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE-----TTEEEESSHHHHHHHS-CCSEEEECCCHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCe-EEEEECCCCCC---ceE-----CCEEeeCCHHHHhhcC-CCCEEEEecCHH-
Confidence 368999998 99999999999999998 44444443210 000 1477888999998721 299999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~ 127 (484)
.+.+++++....- -..+|+ .++..+ .+..++.+.+++.|+.+++
T Consensus 76 ~~~~~~~ea~~~G-i~~vVi-~t~G~~~~~~~~l~~~a~~~gi~vig 120 (288)
T 1oi7_A 76 AAADAALEAAHAG-IPLIVL-ITEGIPTLDMVRAVEEIKALGSRLIG 120 (288)
T ss_dssp HHHHHHHHHHHTT-CSEEEE-CCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 6666666665531 222444 444443 3455677777778987765
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00041 Score=68.40 Aligned_cols=96 Identities=11% Similarity=0.116 Sum_probs=61.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhc-CCCCeee---cCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQE-GNLPLYG---FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~-~~~~~~~---~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||. |.+|.+++..|+..| .+|.++|+++.. ......... ...++.. ++++++.++. +|+||++
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~--~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~---aDvVvi~ 75 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP--GVAADLSHIETRATVKGYLGPEQLPDCLKG---CDVVVIP 75 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH--HHHHHHTTSSSSCEEEEEESGGGHHHHHTT---CSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccH--HHHHHHhccCcCceEEEecCCCCHHHHhCC---CCEEEEC
Confidence 48999998 999999999999988 689999999722 111111110 0001333 2456666666 9999999
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
...+. .++++++.+..+. ++.+||..||
T Consensus 76 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~sN 118 (314)
T 1mld_A 76 AGVPRKPGMTRDDLFNTNATIVATLTAACAQHC-PDAMICIISN 118 (314)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSS
T ss_pred CCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence 85432 2444555666655 5556666655
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00018 Score=69.85 Aligned_cols=109 Identities=16% Similarity=0.029 Sum_probs=74.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|+|+|.+|.+++..|.+.|. +|+++||++++.+++.+.. . ..+.+++.+ + .+|+||-++|.+..
T Consensus 123 k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~--------~-~~~~~~l~~-l-~~DivInaTp~Gm~ 191 (282)
T 3fbt_A 123 NICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEF--------K-VISYDELSN-L-KGDVIINCTPKGMY 191 (282)
T ss_dssp SEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTS--------E-EEEHHHHTT-C-CCSEEEECSSTTST
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhc--------C-cccHHHHHh-c-cCCEEEECCccCcc
Confidence 579999999999999999999998 8999999999987776422 1 113333333 3 49999999987521
Q ss_pred H--HH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 V--DQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v--~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
- +. .+ -...++++.+|+|..-.+ ..| .+.+..+++|...++
T Consensus 192 ~~~~~~pi--~~~~l~~~~~v~DlvY~P-~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 192 PKEGESPV--DKEVVAKFSSAVDLIYNP-VET-LFLKYARESGVKAVN 235 (282)
T ss_dssp TSTTCCSS--CHHHHTTCSEEEESCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred CCCccCCC--CHHHcCCCCEEEEEeeCC-CCC-HHHHHHHHCcCeEeC
Confidence 1 10 01 012356789999987554 333 345556677876554
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00028 Score=68.94 Aligned_cols=109 Identities=15% Similarity=0.084 Sum_probs=75.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~ 80 (484)
.++.|+|+ |.||..+++++.+.|++ .+|..+|.+... .. +++..+.+++++.+ . +|++++++|+.
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~---~i-----~G~~vy~sl~el~~~~~---~Dv~ii~vp~~ 81 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQ---NV-----HGVPVFDTVKEAVKETD---ANASVIFVPAP 81 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTC---EE-----TTEEEESSHHHHHHHHC---CCEEEECCCHH
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCc---eE-----CCEeeeCCHHHHhhcCC---CCEEEEccCHH
Confidence 46888898 99999999999999998 666666653200 00 14778899999987 5 99999999986
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEEe
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+.+++++.... .. ..+|..++. ...+..++.+.+++.|+.+++
T Consensus 82 -~~~~~v~ea~~~-Gi-~~vVi~t~G~~~~~~~~l~~~A~~~gi~viG 126 (294)
T 2yv1_A 82 -FAKDAVFEAIDA-GI-ELIVVITEHIPVHDTMEFVNYAEDVGVKIIG 126 (294)
T ss_dssp -HHHHHHHHHHHT-TC-SEEEECCSCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred -HHHHHHHHHHHC-CC-CEEEEECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 566666665553 12 323444444 334456677777778987764
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0003 Score=70.03 Aligned_cols=94 Identities=10% Similarity=0.160 Sum_probs=62.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHHHHHHHHhh-hc-CCC----------CeeecCCHhHHHhhcC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPI-SVYNRTTSKVDETVERAK-QE-GNL----------PLYGFHDPESFVHSIQ 68 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~~~~~~~-~~-~~~----------~~~~~~s~~e~~~~l~ 68 (484)
|.||||+|+|.||..+++.|.++. .+| .++|++++....+.+... .. +.+ .+....+++++...
T Consensus 2 ~irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~-- 79 (334)
T 2czc_A 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEK-- 79 (334)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTT--
T ss_pred CcEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccC--
Confidence 459999999999999999998764 454 567888777766654321 00 000 12345678888765
Q ss_pred CCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEec
Q 011501 69 KPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 69 ~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
.|+|++|+|...+.+... .+++.|..||..
T Consensus 80 -vDvV~~aTp~~~h~~~a~----~~l~aGk~Vi~s 109 (334)
T 2czc_A 80 -VDIIVDATPGGIGAKNKP----LYEKAGVKAIFQ 109 (334)
T ss_dssp -CSEEEECCSTTHHHHHHH----HHHHHTCEEEEC
T ss_pred -CCEEEECCCccccHHHHH----HHHHcCCceEee
Confidence 999999999985444332 234456666643
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00085 Score=67.01 Aligned_cols=108 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|+|+|++|...|+.|.+.|.+|.++|+++++ .+..+.. +.+.. +.+++... .+|+++-|-....-.
T Consensus 176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~------ga~~v-~~~ell~~--~~DIliP~A~~~~I~ 245 (355)
T 1c1d_A 176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVAL------GHTAV-ALEDVLST--PCDVFAPCAMGGVIT 245 (355)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHT------TCEEC-CGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhc------CCEEe-ChHHhhcC--ccceecHhHHHhhcC
Confidence 58999999999999999999999999999999876 3333322 13333 55666551 389998653222111
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+. ++.+ +.++|++.++...... +..+.+.++|+.++.
T Consensus 246 ~~~----~~~l-k~~iVie~AN~p~t~~-eA~~~L~~~gIlv~P 283 (355)
T 1c1d_A 246 TEV----ARTL-DCSVVAGAANNVIADE-AASDILHARGILYAP 283 (355)
T ss_dssp HHH----HHHC-CCSEECCSCTTCBCSH-HHHHHHHHTTCEECC
T ss_pred HHH----HhhC-CCCEEEECCCCCCCCH-HHHHHHHhCCEEEEC
Confidence 222 2344 3689999998864332 335778888876653
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00019 Score=71.41 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=73.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC------C--CcE-EEEeCChhHHHH------HHHHhhhcCCCCee-ecC---CHhHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK------G--FPI-SVYNRTTSKVDE------TVERAKQEGNLPLY-GFH---DPESF 63 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~------G--~~V-~v~dr~~~~~~~------~~~~~~~~~~~~~~-~~~---s~~e~ 63 (484)
+.||||||+|.||..++..|.+. | .+| .++|+++++.+. +.+..... .+. .++ +++++
T Consensus 6 ~irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~l 82 (331)
T 3c8m_A 6 TINLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKG---SLDSLEYESISASEA 82 (331)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTT---CGGGCCSEECCHHHH
T ss_pred EEeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccC---CcccccCCCCCHHHH
Confidence 36899999999999999998764 2 454 577988765432 22211110 121 344 89998
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC-hHHHHHHHHHHHHcCCeE-EeccCCC
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW-YENTERRQKAVAELGLLY-LGMGVSG 132 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~g~~~-i~~pv~g 132 (484)
+ . ...|+|+.|+|.....+...+.....+..|+-|+.+.... .....++.+..+++|+.| .++.+.+
T Consensus 83 l-~-~~iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~gv~~~~ea~vg~ 151 (331)
T 3c8m_A 83 L-A-RDFDIVVDATPASADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNNRRIRYEATVAG 151 (331)
T ss_dssp H-H-SSCSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSST
T ss_pred h-C-CCCCEEEECCCCCCccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 8 4 3489999999985101112223344566788777654321 123345555566677654 3333433
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00049 Score=68.19 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCC--CcEEEEeCChhHH--HHHHHHhhhcCCCCeee---cCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKG--FPISVYNRTTSKV--DETVERAKQEGNLPLYG---FHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G--~~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~---~~s~~e~~~~l~~advIi 74 (484)
+|||+||| +|.+|.+++..|+..| ++|.++|++++.. .++..... ...+.. .+++++.++. +|+||
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~---~~~v~~~~~t~d~~~al~g---aDvVi 81 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDT---GAVVRGFLGQQQLEAALTG---MDLII 81 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCS---SCEEEEEESHHHHHHHHTT---CSEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccc---cceEEEEeCCCCHHHHcCC---CCEEE
Confidence 46999999 8999999999999998 7999999987621 11221100 001222 2244555555 99999
Q ss_pred EecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 75 MLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 75 ~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+.+. .++++++.+..+- +..+|+..||
T Consensus 82 ~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~-p~~~viv~SN 126 (326)
T 1smk_A 82 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCC-PRAIVNLISN 126 (326)
T ss_dssp ECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCS
T ss_pred EcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEECC
Confidence 9986432 1334445555544 4556666544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00051 Score=71.21 Aligned_cols=90 Identities=12% Similarity=0.058 Sum_probs=69.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++++|+|+|.+|..+|+.|+..|.+|+++|+++.+.......+ + ...+.+++... +|+++.+......+
T Consensus 266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g-------~-dv~~lee~~~~---aDvVi~atG~~~vl 334 (488)
T 3ond_A 266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEG-------L-QVLTLEDVVSE---ADIFVTTTGNKDII 334 (488)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------C-EECCGGGTTTT---CSEEEECSSCSCSB
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhC-------C-ccCCHHHHHHh---cCEEEeCCCChhhh
Confidence 5799999999999999999999999999999998876655433 2 23467777766 99999887654322
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ......++++.+|++.+...
T Consensus 335 ~---~e~l~~mk~gaiVvNaG~~~ 355 (488)
T 3ond_A 335 M---LDHMKKMKNNAIVCNIGHFD 355 (488)
T ss_dssp C---HHHHTTSCTTEEEEESSSTT
T ss_pred h---HHHHHhcCCCeEEEEcCCCC
Confidence 2 23456688999999998753
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0015 Score=63.52 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=62.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHH----HHHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDET----VERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~----~~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.+|.++|..|+.++. ++.+||+++++++.. ........ ..++....+.+++ +. +|+||++
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~-~~---aDvVvit 76 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLL-KG---SEIIVVT 76 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHh-CC---CCEEEEe
Confidence 699999999999999999988775 799999998765432 22111000 0123444556543 33 9999998
Q ss_pred cCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
--.+ .. ++++.+++..+. ++.+++..||-
T Consensus 77 AG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~-p~aivlvvsNP 120 (294)
T 2x0j_A 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENA-PESKILVVTNP 120 (294)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEECSSS
T ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcC-CceEEEEecCc
Confidence 7322 11 233445555554 56777777774
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0004 Score=68.41 Aligned_cols=99 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHh-C-CCc-EEEEeCChhH-HHHHHHHhhhcCCCCee-ecCCHhHHHhh--cCCCcE
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAE-K-GFP-ISVYNRTTSK-VDETVERAKQEGNLPLY-GFHDPESFVHS--IQKPRV 72 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~-~-G~~-V~v~dr~~~~-~~~~~~~~~~~~~~~~~-~~~s~~e~~~~--l~~adv 72 (484)
|+ +.||||||+|.+|..++..|.+ . +.+ |.++|+++++ ...+.+... +. ...+.+++++. ....|+
T Consensus 1 M~~~irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g------~~~~~~~~e~ll~~~~~~~iDv 74 (312)
T 1nvm_B 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMG------VTTTYAGVEGLIKLPEFADIDF 74 (312)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTT------CCEESSHHHHHHHSGGGGGEEE
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcC------CCcccCCHHHHHhccCCCCCcE
Confidence 54 4689999999999999999966 3 444 4578999887 555544321 22 24566777543 134899
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|++++|...+.+. ....+.. .+|..|++.+...
T Consensus 75 V~~atp~~~h~~~-a~~al~a-~~Gk~Vi~ekp~~ 107 (312)
T 1nvm_B 75 VFDATSASAHVQN-EALLRQA-KPGIRLIDLTPAA 107 (312)
T ss_dssp EEECSCHHHHHHH-HHHHHHH-CTTCEEEECSTTC
T ss_pred EEECCChHHHHHH-HHHHHHh-CCCCEEEEcCccc
Confidence 9999996543332 2222221 1388888877543
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00051 Score=65.98 Aligned_cols=70 Identities=10% Similarity=0.101 Sum_probs=51.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|||+|.|.|+|.+|..++..|+++|++|++.+|++++.+.+...+.. . ...|+.++ + ++++|+||-+...
T Consensus 4 m~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-----~-~~~D~~d~-~-~~~~d~vi~~a~~ 73 (286)
T 3ius_A 4 MTGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAE-----P-LLWPGEEP-S-LDGVTHLLISTAP 73 (286)
T ss_dssp -CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEE-----E-EESSSSCC-C-CTTCCEEEECCCC
T ss_pred CcCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCe-----E-EEeccccc-c-cCCCCEEEECCCc
Confidence 35799999999999999999999999999999999887766543211 1 11233332 1 4558999988754
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00028 Score=73.43 Aligned_cols=85 Identities=13% Similarity=0.264 Sum_probs=59.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~ 80 (484)
.|||-|+|+|.+|..+|+.|.+.||+|++.|+++++++.+.+...-. -+.+..+-.++.+ .+++||+++.+++++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~---~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~D 79 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLR---VVNGHASHPDVLHEAGAQDADMLVAVTNTD 79 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCE---EEESCTTCHHHHHHHTTTTCSEEEECCSCH
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcE---EEEEcCCCHHHHHhcCCCcCCEEEEEcCCh
Confidence 47999999999999999999999999999999999998887643110 1223333333333 356799888777654
Q ss_pred chHHHHHHHHh
Q 011501 81 SPVDQTIKTLS 91 (484)
Q Consensus 81 ~~v~~vl~~l~ 91 (484)
.+.-++..++
T Consensus 80 -e~Nl~~~~~A 89 (461)
T 4g65_A 80 -ETNMAACQVA 89 (461)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4443333333
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00041 Score=68.07 Aligned_cols=112 Identities=12% Similarity=0.014 Sum_probs=76.7
Q ss_pred CCeEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLA-GL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiI-Gl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+|+|| |. |.+|...+++|.+.|++ .+|+.||.+.. ++. . ++..+.+++|+.+.. .+|++++++|+.
T Consensus 13 ~~siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g---~~i--~---G~~vy~sl~el~~~~-~vD~avI~vP~~ 82 (305)
T 2fp4_A 13 KNTKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGG---KTH--L---GLPVFNTVKEAKEQT-GATASVIYVPPP 82 (305)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTT---CEE--T---TEEEESSHHHHHHHH-CCCEEEECCCHH
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCc---ceE--C---CeeeechHHHhhhcC-CCCEEEEecCHH
Confidence 3568999 98 99999999999999999 55566654311 000 1 477888999998711 299999999987
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC-hHHHHHHHHHHHHc-CCeEEe
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW-YENTERRQKAVAEL-GLLYLG 127 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~-~~~~~~~~~~l~~~-g~~~i~ 127 (484)
.+.++++++...= - ..++..+... ..+..++.+.+++. |+.+++
T Consensus 83 -~~~~~~~e~i~~G-i-~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liG 128 (305)
T 2fp4_A 83 -FAAAAINEAIDAE-V-PLVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 128 (305)
T ss_dssp -HHHHHHHHHHHTT-C-SEEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred -HHHHHHHHHHHCC-C-CEEEEECCCCChHHHHHHHHHHHhcCCcEEEe
Confidence 6667776665531 2 3334444443 34455677777888 888765
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0016 Score=64.49 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=68.5
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChh--HHHHHHHHhhhcCCCCeeecCCHhHHH-hhcCCCcEEEEe--
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTS--KVDETVERAKQEGNLPLYGFHDPESFV-HSIQKPRVIIML-- 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~--~~~~~~~~~~~~~~~~~~~~~s~~e~~-~~l~~advIi~~-- 76 (484)
+++|.|||+|.+|.+ +|+.|.+.|++|+++|+++. ..+.+.+.+. .+..-.+++++. .. +|+||.+
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi-----~v~~g~~~~~l~~~~---~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGI-----DVYEGFDAAQLDEFK---ADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTC-----EEEESCCGGGGGSCC---CSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCC-----EEECCCCHHHcCCCC---CCEEEECCC
Confidence 568999999999995 99999999999999998643 4455554432 122224555544 34 8999985
Q ss_pred cCCCch-HHHHHH---------HHh-hhc-CCCC-EEEecCCCChHHHHHHHHHHHHcCC
Q 011501 77 VKAGSP-VDQTIK---------TLS-VYM-EKGD-CIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 77 vp~~~~-v~~vl~---------~l~-~~l-~~g~-iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+|.+.. +....+ +++ ..+ +... +-|-.|+++-.++.-+...+...|.
T Consensus 76 i~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~ 135 (326)
T 3eag_A 76 AKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGL 135 (326)
T ss_dssp CCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 444322 222221 222 222 2223 4445555654445555667777664
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00052 Score=65.76 Aligned_cols=74 Identities=18% Similarity=0.383 Sum_probs=59.8
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|.+.|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 151 k~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 206 (276)
T 3ngx_A 151 NTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KDIGSMTRS---SKIVVVAVGRPGF 206 (276)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHH---SSEEEECSSCTTC
T ss_pred CEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------ccHHHhhcc---CCEEEECCCCCcc
Confidence 5799999985 89999999999999999998642 356677777 9999999988643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 207 I~------~~~vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 207 LN------REMVTPGSVVIDVGINY 225 (276)
T ss_dssp BC------GGGCCTTCEEEECCCEE
T ss_pred cc------HhhccCCcEEEEeccCc
Confidence 22 24578999999998754
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00024 Score=66.60 Aligned_cols=73 Identities=8% Similarity=0.136 Sum_probs=50.5
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEE
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi 74 (484)
|+|++|.|.| .|.+|..+++.|++.| ++|.+++|++++.+.+... ++.. ..+.+++.+.++.+|+||
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~-------~~~~~~~Dl~d~~~~~~~~~~~D~vv 93 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-------NSQIIMGDVLNHAALKQAMQGQDIVY 93 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT-------TEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC-------CcEEEEecCCCHHHHHHHhcCCCEEE
Confidence 4566899998 6999999999999999 8999999998765432211 1111 124444444445589998
Q ss_pred EecCCC
Q 011501 75 MLVKAG 80 (484)
Q Consensus 75 ~~vp~~ 80 (484)
.+....
T Consensus 94 ~~a~~~ 99 (236)
T 3qvo_A 94 ANLTGE 99 (236)
T ss_dssp EECCST
T ss_pred EcCCCC
Confidence 877654
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00079 Score=66.20 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC---hhHHHHHHHHhhhcCCCCeee--cCCH---hHHHhhcCCCcEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT---TSKVDETVERAKQEGNLPLYG--FHDP---ESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~---~~~~~~~~~~~~~~~~~~~~~--~~s~---~e~~~~l~~advIi 74 (484)
+++.|+|+|-+|.+++..|++.|. +|++++|+ .++.+++.++.....+..+.. ..+. .+.+.. +|+||
T Consensus 149 k~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~---~DiII 225 (312)
T 3t4e_A 149 KTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALAS---ADILT 225 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHH---CSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccC---ceEEE
Confidence 579999999999999999999998 89999999 888877765433210001111 2233 344555 99999
Q ss_pred EecCCCchHHHHHHHH---hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 75 MLVKAGSPVDQTIKTL---SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l---~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
-++|.+..-..- ..+ ...+.++.+|+|.--.+ ..| .+.+..+++|...++
T Consensus 226 NaTp~Gm~~~~~-~~~~~~~~~l~~~~~v~D~vY~P-~~T-~ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 226 NGTKVGMKPLEN-ESLIGDVSLLRPELLVTECVYNP-HMT-KLLQQAQQAGCKTID 278 (312)
T ss_dssp ECSSTTSTTSTT-CCSCCCGGGSCTTCEEEECCCSS-SSC-HHHHHHHHTTCEEEC
T ss_pred ECCcCCCCCCCC-CcccCCHHHcCCCCEEEEeccCC-CCC-HHHHHHHHCCCeEEC
Confidence 999987310000 011 13467889999987654 333 344555677876554
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0022 Score=63.59 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=63.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCC----hhHHHHHHHHhhhc-CCC--CeeecCCHhHHHhhc
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRT----TSKVDETVERAKQE-GNL--PLYGFHDPESFVHSI 67 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~----~~~~~~~~~~~~~~-~~~--~~~~~~s~~e~~~~l 67 (484)
.|||+|+|. |.+|.+++..|+..|+ +|.++|++ +++.+......... ..+ .+...++..+.++.
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~- 83 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKD- 83 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTT-
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCC-
Confidence 469999997 9999999999999885 79999999 55444322111110 000 24445666666665
Q ss_pred CCCcEEEEecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 68 QKPRVIIMLVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 68 ~~advIi~~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++...+. . +.++++.+..+..+..+||..||
T Consensus 84 --aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 84 --ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp --CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 999999864331 1 22333455554335567888875
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00078 Score=62.21 Aligned_cols=72 Identities=14% Similarity=0.273 Sum_probs=49.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHH-hCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIA-EKGFPISVYNRTTS-KVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~-~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~ 75 (484)
|++|.|.| .|.+|..+++.|+ +.|++|.+.+|+++ +.+++..... ++.. ..+.+++.+.++.+|+||.
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHE-----RVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTST-----TEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCC-----ceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 33499999 5999999999999 89999999999988 7666542211 1211 1233444333445788887
Q ss_pred ecCC
Q 011501 76 LVKA 79 (484)
Q Consensus 76 ~vp~ 79 (484)
+...
T Consensus 80 ~ag~ 83 (221)
T 3r6d_A 80 GAME 83 (221)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7754
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00042 Score=65.73 Aligned_cols=108 Identities=13% Similarity=0.057 Sum_probs=72.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.|+|+++|+|.||..+++. . ++++ .+|+ ++..++ ++..+++++++++. +|+|+.|-+..
T Consensus 12 ~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel----------gv~a~~d~d~lla~---pD~VVe~A~~~- 71 (253)
T 1j5p_A 12 HMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI----------PGVVRLDEFQVPSD---VSTVVECASPE- 71 (253)
T ss_dssp CCEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC----------SSSEECSSCCCCTT---CCEEEECSCHH-
T ss_pred cceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc----------CceeeCCHHHHhhC---CCEEEECCCHH-
Confidence 3799999999999999998 4 8876 5677 332222 24567888888754 99999997443
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC---hHHHHHHHHHHHHcCCeE-EeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW---YENTERRQKAVAELGLLY-LGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~---~~~~~~~~~~l~~~g~~~-i~~pv~gg 133 (484)
++++ .+.+.|..|.-++-+|... +...+++.+.+++.|..+ +..+..+|
T Consensus 72 av~e---~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G 124 (253)
T 1j5p_A 72 AVKE---YSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG 124 (253)
T ss_dssp HHHH---HHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC
T ss_pred HHHH---HHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc
Confidence 3333 3556677888888887653 222344444445555554 54666666
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=9.2e-05 Score=68.88 Aligned_cols=79 Identities=24% Similarity=0.356 Sum_probs=51.6
Q ss_pred CeEEEEcccHHHHHHHHH--HHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALN--IAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~--L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|+|||+|.+|..++.. +...|+++. ++|.++++...... +.++...++++++++. .|++++|+|+.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~------gv~V~~~~dl~eli~~---~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVG------GVPVYNLDDLEQHVKD---ESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEET------TEEEEEGGGHHHHCSS---CCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhc------CCeeechhhHHHHHHh---CCEEEEecCch
Confidence 579999999999999994 445578655 67999987543221 1124456677777765 49999999986
Q ss_pred chHHHHHHHHhh
Q 011501 81 SPVDQTIKTLSV 92 (484)
Q Consensus 81 ~~v~~vl~~l~~ 92 (484)
...++++.+..
T Consensus 157 -~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 -AAQSITDRLVA 167 (215)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hHHHHHHHHHH
Confidence 34455555543
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00085 Score=65.57 Aligned_cols=112 Identities=15% Similarity=0.050 Sum_probs=75.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|+|+ |.||..++++|.+.|++ .++..+|.+... .. +++..+.+++++.+....+|++++++|+. .
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~---~i-----~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~ 83 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGS---EV-----HGVPVYDSVKEALAEHPEINTSIVFVPAP-F 83 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC---EE-----TTEEEESSHHHHHHHCTTCCEEEECCCGG-G
T ss_pred CEEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCc---eE-----CCEeeeCCHHHHhhcCCCCCEEEEecCHH-H
Confidence 46888898 99999999999999998 555555543100 00 14778899999876321289999999987 6
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh-HHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY-ENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~-~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+++++....= ...+|+ .++..+ .+..++.+.+++.|+.+++
T Consensus 84 ~~~~v~ea~~~G-i~~vVi-~t~G~~~~~~~~l~~~A~~~gi~viG 127 (297)
T 2yv2_A 84 APDAVYEAVDAG-IRLVVV-ITEGIPVHDTMRFVNYARQKGATIIG 127 (297)
T ss_dssp HHHHHHHHHHTT-CSEEEE-CCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCC-CCEEEE-ECCCCCHHHHHHHHHHHHHcCCEEEc
Confidence 666776665531 222444 444443 3455677777778887664
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=5.8e-05 Score=74.26 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=62.1
Q ss_pred CeEEEEcccHH-HHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-----c--CCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-----F--HDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-----~--~s~~e~~~~l~~advIi~ 75 (484)
.++.|||.|.| |..+|..|...|.+|+++||+..+........... .... + .++++.+.. +|+||.
T Consensus 178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~---~~~~t~~~~t~~~~L~e~l~~---ADIVIs 251 (320)
T 1edz_A 178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLN---KHHVEDLGEYSEDLLKKCSLD---SDVVIT 251 (320)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCC---CCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhh---cccccccccccHhHHHHHhcc---CCEEEE
Confidence 58999999976 99999999999999999999843321111100000 0111 1 456667776 999999
Q ss_pred ecCCCch-HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 76 LVKAGSP-VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 76 ~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++.+.. +. ...+++|.+|||.+..
T Consensus 252 Atg~p~~vI~------~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 252 GVPSENYKFP------TEYIKEGAVCINFACT 277 (320)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred CCCCCcceeC------HHHcCCCeEEEEcCCC
Confidence 9987642 11 1346789999999875
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00016 Score=69.96 Aligned_cols=96 Identities=15% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHh-CCCcEE-EEeCChhHH--HHHHHH-hhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAE-KGFPIS-VYNRTTSKV--DETVER-AKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~-~G~~V~-v~dr~~~~~--~~~~~~-~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+|||+|+|+ |.||+.++..+.+ .|+++. ++|+++++. ..+.+. +.. ..++...++++++++. +|+||-+
T Consensus 5 ~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~--~~~v~~~~dl~~~l~~---~DvVIDf 79 (273)
T 1dih_A 5 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG--KTGVTVQSSLDAVKDD---FDVFIDF 79 (273)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS--CCSCCEESCSTTTTTS---CSEEEEC
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCC--cCCceecCCHHHHhcC---CCEEEEc
Confidence 479999998 9999999998874 577766 789876431 000000 000 0124446677776655 9999955
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+++. ...+.+. ..+..|.-+|-.+|..
T Consensus 80 t~p~-~~~~~~~---~a~~~G~~vVigTtG~ 106 (273)
T 1dih_A 80 TRPE-GTLNHLA---FCRQHGKGMVIGTTGF 106 (273)
T ss_dssp SCHH-HHHHHHH---HHHHTTCEEEECCCCC
T ss_pred CChH-HHHHHHH---HHHhCCCCEEEECCCC
Confidence 5332 3333333 3344566666655544
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00051 Score=57.89 Aligned_cols=103 Identities=11% Similarity=0.045 Sum_probs=75.9
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+.+|+|||+ +..|..+.++|.+.||+|+-+|+..+.+. +...+.|+.++-+ .|++++++|
T Consensus 4 p~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~dlp~----vDlavi~~p 67 (122)
T 3ff4_A 4 MKKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEVL------------GKTIINERPVIEG----VDTVTLYIN 67 (122)
T ss_dssp CCCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEET------------TEECBCSCCCCTT----CCEEEECSC
T ss_pred CCEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcCC------------CeeccCChHHCCC----CCEEEEEeC
Confidence 457999997 56899999999999999999887644321 3566777777643 799999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.. .+.++++++...- ...+|+..+... +++.+.+++.|+++++
T Consensus 68 ~~-~v~~~v~e~~~~g-~k~v~~~~G~~~----~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 68 PQ-NQLSEYNYILSLK-PKRVIFNPGTEN----EELEEILSENGIEPVI 110 (122)
T ss_dssp HH-HHGGGHHHHHHHC-CSEEEECTTCCC----HHHHHHHHHTTCEEEE
T ss_pred HH-HHHHHHHHHHhcC-CCEEEECCCCCh----HHHHHHHHHcCCeEEC
Confidence 86 7777887777643 234666544432 4666777888999885
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.004 Score=60.91 Aligned_cols=98 Identities=9% Similarity=0.081 Sum_probs=59.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHHHHHHhhhc--CCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNR--TTSKVDETVERAKQE--GNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~~~~~~~~~--~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|+| .|.+|.+++..|+..|+ ++.++|+ ++++++......... ...+++...+..+.++. +|+||++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~---aDvVi~~ 77 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAG---SDVVVIT 77 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTT---CSEEEEC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCC---CCEEEEc
Confidence 5899999 99999999999998886 6889999 876654322211110 00012222222444444 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
...+. .++++++.+..+ .+..+|+..||
T Consensus 78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~-~p~~~viv~SN 120 (303)
T 1o6z_A 78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEH-NDDYISLTTSN 120 (303)
T ss_dssp CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTT-CSCCEEEECCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 85432 123333444444 45566666544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00078 Score=65.38 Aligned_cols=76 Identities=16% Similarity=0.287 Sum_probs=58.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|.+.|.+|+++++....++ +++.+.+ +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~l~-------------------l~~~~~~---ADIVI~Avg~p~~ 223 (300)
T 4a26_A 166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTSTED-------------------MIDYLRT---ADIVIAAMGQPGY 223 (300)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCHHH-------------------HHHHHHT---CSEEEECSCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCCch-------------------hhhhhcc---CCEEEECCCCCCC
Confidence 5799999876 899999999999999999997432111 1145565 9999999998643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 224 I~------~~~vk~GavVIDvgi~~ 242 (300)
T 4a26_A 224 VK------GEWIKEGAAVVDVGTTP 242 (300)
T ss_dssp BC------GGGSCTTCEEEECCCEE
T ss_pred Cc------HHhcCCCcEEEEEeccC
Confidence 22 14578999999998653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0009 Score=67.16 Aligned_cols=101 Identities=15% Similarity=0.132 Sum_probs=69.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC----hhH----HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT----TSK----VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~----~~~----~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
..||.|+|.|.+|..+|+.|...|. +|+++||+ .++ +..+.+......+ ......+++|+++. +|++
T Consensus 192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~-~~~~~~~L~eav~~---ADVl 267 (388)
T 1vl6_A 192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERLSGDLETALEG---ADFF 267 (388)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCCCSCHHHHHTT---CSEE
T ss_pred CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhh-ccCchhhHHHHHcc---CCEE
Confidence 3589999999999999999999998 89999998 554 3233332222100 11224578888877 9999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT 111 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 111 (484)
|-+..++...++. ...+.++.+|+++|+-.|+.+
T Consensus 268 IG~Sap~l~t~em----Vk~Ma~~pIIfalSNPt~E~~ 301 (388)
T 1vl6_A 268 IGVSRGNILKPEW----IKKMSRKPVIFALANPVPEID 301 (388)
T ss_dssp EECSCSSCSCHHH----HTTSCSSCEEEECCSSSCSSC
T ss_pred EEeCCCCccCHHH----HHhcCCCCEEEEcCCCCCCCC
Confidence 9887644333344 344567889999999766444
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0011 Score=64.17 Aligned_cols=96 Identities=19% Similarity=0.170 Sum_probs=62.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CCcE-EEEeCChhH-----HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEK-GFPI-SVYNRTTSK-----VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V-~v~dr~~~~-----~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
++||+|+| +|.||+.++..+.+. ++++ .++|+++.. +.++.... ..++..++++++++.. +|+||
T Consensus 21 ~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~----~~gv~v~~dl~~ll~~---aDVvI 93 (288)
T 3ijp_A 21 SMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD----FLGVRITDDPESAFSN---TEGIL 93 (288)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS----CCSCBCBSCHHHHTTS---CSEEE
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC----cCCceeeCCHHHHhcC---CCEEE
Confidence 35899999 999999999998754 6664 466887532 11111000 1246778899998876 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
-.+++. .+.+. +...+..|.-+|.++|....
T Consensus 94 DFT~p~-a~~~~---~~~~l~~Gv~vViGTTG~~~ 124 (288)
T 3ijp_A 94 DFSQPQ-ASVLY---ANYAAQKSLIHIIGTTGFSK 124 (288)
T ss_dssp ECSCHH-HHHHH---HHHHHHHTCEEEECCCCCCH
T ss_pred EcCCHH-HHHHH---HHHHHHcCCCEEEECCCCCH
Confidence 877543 33333 33345567777777777644
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0013 Score=65.29 Aligned_cols=102 Identities=11% Similarity=0.174 Sum_probs=61.0
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeC--ChhHHHHHHHHhhhcCCC----------------Ceeec--C
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNR--TTSKVDETVERAKQEGNL----------------PLYGF--H 58 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr--~~~~~~~~~~~~~~~~~~----------------~~~~~--~ 58 (484)
|||.||||+|+|++|..+++.|.++ +.+|. +.|+ +++....+.+....-+.+ .+... .
T Consensus 1 mM~ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~ 80 (335)
T 1u8f_O 1 MGKVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQER 80 (335)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCS
T ss_pred CCceEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecC
Confidence 6667999999999999999998875 46655 4564 666665555421100000 01111 2
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++++.-.-..+|+||.|+|.....+. ...+++.|..+|++|.-
T Consensus 81 d~~~l~~~~~~vDvV~eatg~~~~~e~----a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 81 DPSKIKWGDAGAEYVVESTGVFTTMEK----AGAHLQGGAKRVIISAP 124 (335)
T ss_dssp SGGGCCTTTTTCCEEEECSSSCCSHHH----HGGGGGGTCSEEEESSC
T ss_pred CHHHCccccCCCCEEEECCCchhhHHH----HHHHHhCCCeEEEeccC
Confidence 555542000238999999998865432 23456678667777764
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=60.03 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=31.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 36 (484)
++|.|||+|.+|..++.+|++.|. +++++|++.
T Consensus 32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 589999999999999999999997 899999987
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0077 Score=59.12 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=58.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-C--CcEEEEeCChhHHHHHHHHhhhcCCCC--eeec--CCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEK-G--FPISVYNRTTSKVDETVERAKQEGNLP--LYGF--HDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~-G--~~V~v~dr~~~~~~~~~~~~~~~~~~~--~~~~--~s~~e~~~~l~~advIi~ 75 (484)
|||+||| +|.+|.+++..|... + .++.++|+++ +++......... .+. +... ++..+..+. +|+||+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~-~~~~~v~~~~~~~~~~~~~~---aDivii 75 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI-PTAVKIKGFSGEDATPALEG---ADVVLI 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS-CSSEEEEEECSSCCHHHHTT---CSEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC-CCCceEEEecCCCcHHHhCC---CCEEEE
Confidence 5899999 899999999999875 5 4899999987 222111111110 111 2221 233444455 999999
Q ss_pred ecCCCc----h-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 76 LVKAGS----P-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 76 ~vp~~~----~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+.+. . ++++.+.+..+ .++.+++..||-
T Consensus 76 ~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~-~p~a~vlvvtNP 120 (312)
T 3hhp_A 76 SAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKT-CPKACIGIITNP 120 (312)
T ss_dssp CCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECSSC
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-CCCcEEEEecCc
Confidence 875432 1 22333455555 366778888763
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0038 Score=62.11 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHHHHHHHHhhhc--C---------CCCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPI-SVYNRTTSKVDETVERAKQE--G---------NLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~~~~~~~~~~~--~---------~~~~~~~~s~~e~~~~l~~a 70 (484)
.||||+|+|.||..+++.|.++. .+| .+.|++++....+.....-. . ..++....+++++.+. +
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~---v 78 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKT---S 78 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHH---C
T ss_pred eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcC---C
Confidence 58999999999999999998764 454 46788876655544331000 0 0011122244454445 8
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+||.|+|... ..+.... ++..|..+|+.|...
T Consensus 79 DvV~~aTp~~~-s~~~a~~---~~~aG~kvV~~sa~~ 111 (340)
T 1b7g_O 79 DIVVDTTPNGV-GAQYKPI---YLQLQRNAIFQGGEK 111 (340)
T ss_dssp SEEEECCSTTH-HHHHHHH---HHHTTCEEEECTTSC
T ss_pred CEEEECCCCch-hHHHHHH---HHHcCCeEEEeCCCC
Confidence 99999998873 3333332 344677788877653
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00026 Score=70.23 Aligned_cols=87 Identities=15% Similarity=0.126 Sum_probs=59.4
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCC---------CcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKG---------FPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G---------~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~a 70 (484)
|.+++|||||+|.||..++..|.++. .+| .++|+++++.+.+. ....++|+++++ . .
T Consensus 1 Mk~irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~---------~~~~~~d~~~ll-~---i 67 (332)
T 2ejw_A 1 MEALKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP---------QELLRAEPFDLL-E---A 67 (332)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC---------GGGEESSCCCCT-T---C
T ss_pred CCeeEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC---------cccccCCHHHHh-C---C
Confidence 55578999999999999999998763 444 57799876532210 013567888877 4 9
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEec
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~ 103 (484)
|+|+.|+|......+.+. ..+..|+-|+..
T Consensus 68 DvVve~t~~~~~a~~~~~---~AL~aGKhVVta 97 (332)
T 2ejw_A 68 DLVVEAMGGVEAPLRLVL---PALEAGIPLITA 97 (332)
T ss_dssp SEEEECCCCSHHHHHHHH---HHHHTTCCEEEC
T ss_pred CEEEECCCCcHHHHHHHH---HHHHcCCeEEEC
Confidence 999999988744343433 344566666654
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0016 Score=63.20 Aligned_cols=74 Identities=12% Similarity=0.204 Sum_probs=59.2
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 221 (301)
T 1a4i_A 166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AHLDEEVNK---GDILVVATGQPEM 221 (301)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------------------ccHHHHhcc---CCEEEECCCCccc
Confidence 5899999995 79999999999999999998542 355666666 9999999988742
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 222 I~------~~~vk~GavVIDVgi~~ 240 (301)
T 1a4i_A 222 VK------GEWIKPGAIVIDCGINY 240 (301)
T ss_dssp BC------GGGSCTTCEEEECCCBC
T ss_pred CC------HHHcCCCcEEEEccCCC
Confidence 22 13478999999998864
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0016 Score=62.66 Aligned_cols=74 Identities=16% Similarity=0.244 Sum_probs=58.6
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (285)
T 3l07_A 162 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TDLKSHTTK---ADILIVAVGKPNF 217 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SSHHHHHTT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHhccc---CCEEEECCCCCCC
Confidence 5799999887 79999999999999999998642 245566666 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (285)
T 3l07_A 218 IT------ADMVKEGAVVIDVGINH 236 (285)
T ss_dssp BC------GGGSCTTCEEEECCCEE
T ss_pred CC------HHHcCCCcEEEEecccC
Confidence 22 24578999999998653
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0015 Score=62.95 Aligned_cols=74 Identities=19% Similarity=0.265 Sum_probs=59.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 161 k~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p~~ 216 (285)
T 3p2o_A 161 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDLSLYTRQ---ADLIIVAAGCVNL 216 (285)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSSCTTC
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhhc---CCEEEECCCCCCc
Confidence 5799999887 79999999999999999998642 245566666 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 217 I~------~~~vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 217 LR------SDMVKEGVIVVDVGINR 235 (285)
T ss_dssp BC------GGGSCTTEEEEECCCEE
T ss_pred CC------HHHcCCCeEEEEeccCc
Confidence 22 24678999999998653
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.035 Score=52.73 Aligned_cols=151 Identities=12% Similarity=0.041 Sum_probs=99.7
Q ss_pred CeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 53 PLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 53 ~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+++.+++..|+++. +|++|+-+|-+...-.+++.+++++++|.+|.++.|.+|...-...+.+.++.+.+.+....+
T Consensus 128 GVkVtsDD~EAvk~---AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaa 204 (358)
T 2b0j_A 128 GLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGC 204 (358)
T ss_dssp TCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSS
T ss_pred CcEeecchHHHhcC---CCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 57888888899888 999999999998788999999999999999999999998877776666665556655542211
Q ss_pred CHHhhhcCCccccC--CCHHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 011501 133 GEEGARYGPSLMPG--GSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSV 210 (484)
Q Consensus 133 g~~~a~~g~~i~~g--g~~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~ 210 (484)
.++. .|.++..- .+++.++++..+.++.+++. |.+-..=.+...-|. ..+.+...+.+.+-+....+.
T Consensus 205 -VPgt-~Gq~~~g~~yAtEEqIeklveLaksa~k~a-------y~vPAdl~SpV~DMg-s~vTAv~~AGiL~Y~~~vtkI 274 (358)
T 2b0j_A 205 -VPEM-KGQVYIAEGYASEEAVNKLYEIGKIARGKA-------FKMPANLIGPVCDMC-SAVTATVYAGLLAYRDAVTKI 274 (358)
T ss_dssp -CTTT-CCCEEEEESSSCHHHHHHHHHHHHHHHSCE-------EEEEHHHHHHHHSTT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred -CCCC-CCccccccccCCHHHHHHHHHHHHHhCCCe-------EecchhhccchhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 1111 45433222 38899999999999998763 433211111111111 233344455555666555444
Q ss_pred CCCCHH
Q 011501 211 GKLSNE 216 (484)
Q Consensus 211 g~~~~~ 216 (484)
-|.+.+
T Consensus 275 lgAP~~ 280 (358)
T 2b0j_A 275 LGAPAD 280 (358)
T ss_dssp SCCCHH
T ss_pred hcCcHH
Confidence 435544
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0015 Score=63.03 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=59.0
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|...|.+|++++++. .++++.+.. +|+||.+++.+..
T Consensus 160 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~L~~~~~~---ADIVI~Avg~p~l 215 (288)
T 1b0a_A 160 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KNLRHHVEN---ADLLIVAVGKPGF 215 (288)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SCHHHHHHH---CSEEEECSCCTTC
T ss_pred CEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hhHHHHhcc---CCEEEECCCCcCc
Confidence 5899999996 69999999999999999997543 355666776 9999999997742
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 216 I~------~~~vk~GavVIDVgi~r 234 (288)
T 1b0a_A 216 IP------GDWIKEGAIVIDVGINR 234 (288)
T ss_dssp BC------TTTSCTTCEEEECCCEE
T ss_pred CC------HHHcCCCcEEEEccCCc
Confidence 11 13468999999998753
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0023 Score=63.50 Aligned_cols=100 Identities=14% Similarity=0.253 Sum_probs=56.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcEEE-EeC--ChhHHHHHHHHhhhcCCC------------------Ceeec-
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPISV-YNR--TTSKVDETVERAKQEGNL------------------PLYGF- 57 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v-~dr--~~~~~~~~~~~~~~~~~~------------------~~~~~- 57 (484)
||++||||+|+|.+|..+++.|.++ +++|.. .|+ +++....+.+....-|.+ .+...
T Consensus 1 mm~ikVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~ 80 (337)
T 3e5r_O 1 MGKIKIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFG 80 (337)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEEC
T ss_pred CCceEEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEe
Confidence 5556999999999999999999886 456554 453 445444444211000000 01112
Q ss_pred -CCHhHHH-hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCC--EEEecCC
Q 011501 58 -HDPESFV-HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGD--CIIDGGN 105 (484)
Q Consensus 58 -~s~~e~~-~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 105 (484)
.+++++. .. ..+|+||.|+|.....+. . ..++..|. +||+.+.
T Consensus 81 ~~dp~~l~w~~-~~vDvV~eaTg~~~~~e~-a---~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 81 IRNPDEIPWAE-AGAEYVVESTGVFTDKEK-A---AAHLKGGAKKVVISAPS 127 (337)
T ss_dssp CSCGGGCCHHH-HTCSEEEECSSSCCSHHH-H---THHHHTTCSEEEESSCC
T ss_pred cCChHHccccc-cCCCEEEECCCchhhHHH-H---HHHHHcCCCEEEEecCC
Confidence 2555541 10 128999999988755432 2 22344555 8888765
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=62.82 Aligned_cols=74 Identities=16% Similarity=0.313 Sum_probs=58.3
Q ss_pred CeEEEEcccHH-HHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVM-GQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~m-G~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++.|||.|.+ |.++|..|.+. |.+|++++++. .++.+.+.+ +|+||.+++.+
T Consensus 159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------~~L~~~~~~---ADIVI~Avg~p 214 (281)
T 2c2x_A 159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------RDLPALTRQ---ADIVVAAVGVA 214 (281)
T ss_dssp CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------SCHHHHHTT---CSEEEECSCCT
T ss_pred CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------hHHHHHHhh---CCEEEECCCCC
Confidence 58999999975 99999999999 88999997653 255556666 99999999887
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+. ..++++|.+|||.+...
T Consensus 215 ~~I~------~~~vk~GavVIDVgi~r 235 (281)
T 2c2x_A 215 HLLT------ADMVRPGAAVIDVGVSR 235 (281)
T ss_dssp TCBC------GGGSCTTCEEEECCEEE
T ss_pred cccC------HHHcCCCcEEEEccCCC
Confidence 4221 13478899999998753
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0059 Score=63.17 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=66.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh----HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--c
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS----KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--V 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~----~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--v 77 (484)
++|.|||+|..|.+.|+.|.+.|++|+++|+++. ..+.+.+.+. .+..-..+++.... .+|+||++ +
T Consensus 10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi-----~~~~g~~~~~~~~~--~~d~vv~spgi 82 (451)
T 3lk7_A 10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGI-----KVVCGSHPLELLDE--DFCYMIKNPGI 82 (451)
T ss_dssp CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTC-----EEEESCCCGGGGGS--CEEEEEECTTS
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCC-----EEEECCChHHhhcC--CCCEEEECCcC
Confidence 5899999999999999999999999999998642 3344444332 12222333333331 16888886 4
Q ss_pred CCCchH-HHHHH---------HHhhhcCCCCEE-EecCCCChHHHHHHHHHHHHcCCeE
Q 011501 78 KAGSPV-DQTIK---------TLSVYMEKGDCI-IDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 78 p~~~~v-~~vl~---------~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
|.+... ....+ +++..+.+..+| |-.|+++-.++.-+...+...|...
T Consensus 83 ~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~ 141 (451)
T 3lk7_A 83 PYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQRG 141 (451)
T ss_dssp CTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTCCE
T ss_pred CCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 443222 21111 222223334444 4445555444455566777777643
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.013 Score=56.98 Aligned_cols=103 Identities=15% Similarity=0.064 Sum_probs=76.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.+.|.+.+..+..++|++.+.++. ++|..++.++++.| ..+|++++.....+.+.+.. +
T Consensus 172 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 238 (303)
T 3g0o_A 172 PGAGSTVKIIHQLLAGVHIAAAAEAMALAARA------GIPLDVMYDVVTHA-AGNSWMFENRMQHVVDGDYT------P 238 (303)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccCCHHHHhhhHHHhcCCCC------C
Confidence 36789999999999999999999999987753 49999999999987 45788777654443332211 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
-|. +.....+++.++..|-+.|+|+|.+.++...|.
T Consensus 239 ~~~--~~~~~kD~~~~~~~a~~~g~~~p~~~~~~~~~~ 274 (303)
T 3g0o_A 239 RSA--VDIFVKDLGLVADTAKALRFPLPLASTALNMFT 274 (303)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 111 112234467899999999999999998887654
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0021 Score=64.49 Aligned_cols=96 Identities=13% Similarity=0.173 Sum_probs=57.7
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCC--CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGN--LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~--~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
+++||+|+| .|.+|..+.+.|.++.. ++...+...+.-..+...... .+. ..+... + ++..+. +|+||+|
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~-~-~~~~~~---vDvVf~a 89 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSV-K-DADFST---VDAVFCC 89 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCG-G-GCCGGG---CSEEEEC
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceec-c-hhHhcC---CCEEEEc
Confidence 346899999 89999999999998764 666664433221222211110 000 011111 1 333334 9999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|.+...+ .. ..+ ..|..|||.|+..
T Consensus 90 tp~~~s~~-~a---~~~-~aG~~VId~sa~~ 115 (359)
T 1xyg_A 90 LPHGTTQE-II---KEL-PTALKIVDLSADF 115 (359)
T ss_dssp CCTTTHHH-HH---HTS-CTTCEEEECSSTT
T ss_pred CCchhHHH-HH---HHH-hCCCEEEECCccc
Confidence 99985432 22 234 6789999999865
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0029 Score=62.90 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=60.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhh-h-cC----------CCCeeecCCHhHHHhhcCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAK-Q-EG----------NLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~-~-~~----------~~~~~~~~s~~e~~~~l~~ 69 (484)
.||||+|+|.||..+++.|.++ ++++ .+.|+++........... . .+ +.++....+++++...
T Consensus 2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~--- 78 (337)
T 1cf2_P 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDE--- 78 (337)
T ss_dssp EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHT---
T ss_pred eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcC---
Confidence 5899999999999999999875 4565 456887665544433210 0 00 0012222356666655
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+||.|+|.... .+..... ++.|..|||.+...
T Consensus 79 vDvV~~atp~~~~-~~~a~~~---l~aG~~VId~sp~~ 112 (337)
T 1cf2_P 79 ADIVIDCTPEGIG-AKNLKMY---KEKGIKAIFQGGEK 112 (337)
T ss_dssp CSEEEECCSTTHH-HHHHHHH---HHHTCCEEECTTSC
T ss_pred CCEEEECCCchhh-HHHHHHH---HHcCCEEEEecCCC
Confidence 9999999998743 3333333 33466688887763
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0018 Score=58.52 Aligned_cols=72 Identities=17% Similarity=0.295 Sum_probs=49.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~ 75 (484)
|+.|+|.|+|. |.+|..+++.|++.|++|++.+|++++...+... ++.. ..+.+++.+.++.+|+||.
T Consensus 1 M~~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~d~vi~ 73 (206)
T 1hdo_A 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-------PAHVVVGDVLQAADVDKTVAGQDAVIV 73 (206)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-------CSEEEESCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCC-------ceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 66578999987 9999999999999999999999998764321000 1111 1234444444445788887
Q ss_pred ecCC
Q 011501 76 LVKA 79 (484)
Q Consensus 76 ~vp~ 79 (484)
+...
T Consensus 74 ~a~~ 77 (206)
T 1hdo_A 74 LLGT 77 (206)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7654
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=66.77 Aligned_cols=94 Identities=12% Similarity=0.258 Sum_probs=57.8
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCC-CcEEEEeCChh----HHHHHHHH--------hhhcCCCCeeec-CCHhHHHh-h
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKG-FPISVYNRTTS----KVDETVER--------AKQEGNLPLYGF-HDPESFVH-S 66 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~dr~~~----~~~~~~~~--------~~~~~~~~~~~~-~s~~e~~~-~ 66 (484)
++||+|+| .|.+|..+.+.|.++. ++|...++++. ..+..... ... .+... .+++++.+ .
T Consensus 8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 83 (354)
T 1ys4_A 8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIK----DMVVIPTDPKHEEFED 83 (354)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHH----TCBCEESCTTSGGGTT
T ss_pred cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCce----eeEEEeCCHHHHhcCC
Confidence 36899999 8999999999998875 47766643221 12211000 000 01111 24555544 4
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+||+|+|.. ...+....+ +..|..|||.++..
T Consensus 84 ---~DvV~~atp~~-~~~~~a~~~---~~aG~~VId~s~~~ 117 (354)
T 1ys4_A 84 ---VDIVFSALPSD-LAKKFEPEF---AKEGKLIFSNASAY 117 (354)
T ss_dssp ---CCEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred ---CCEEEECCCch-HHHHHHHHH---HHCCCEEEECCchh
Confidence 99999999886 334444443 34688899998763
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0014 Score=65.37 Aligned_cols=98 Identities=10% Similarity=0.199 Sum_probs=57.4
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCC-CCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGN-LPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|+ ++||+|+| .|.+|..+.+.|.++.. ++....+..+.-..+......-.+ ..+. ..+.++ +..+|+||+|
T Consensus 1 M~~~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~-~~~~~~----~~~vDvV~~a 75 (345)
T 2ozp_A 1 MTGKKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLK-FVPPEK----LEPADILVLA 75 (345)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCB-CBCGGG----CCCCSEEEEC
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCccccc-ccchhH----hcCCCEEEEc
Confidence 54 57999999 79999999999998764 766554433221111110000000 0111 223332 3459999999
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|... ..+.+.. ++..|..|||.|+..
T Consensus 76 ~g~~~-s~~~a~~---~~~aG~~VId~Sa~~ 102 (345)
T 2ozp_A 76 LPHGV-FAREFDR---YSALAPVLVDLSADF 102 (345)
T ss_dssp CCTTH-HHHTHHH---HHTTCSEEEECSSTT
T ss_pred CCcHH-HHHHHHH---HHHCCCEEEEcCccc
Confidence 99873 3333333 345788999999864
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.016 Score=56.90 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|+++|.+.++.+..++|++.+.++. ++|..++.++++.+ ..+|++++.....+.+.+-. +
T Consensus 192 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~l~~~~~------~ 258 (320)
T 4dll_A 192 HGSGQLTKLANQMIVGITIGAVAEALLFATKG------GADMAKVKEAITGG-FADSRVLQLHGQRMVERDFA------P 258 (320)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCCHHHHHHHHTTS-TTCBHHHHTHHHHHHTTCCC------C
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcc-cccCHHHHHhhhhhccCCCC------C
Confidence 37889999999999999999999999998753 49999999999988 46788887765554433211 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
-|.- .-...+++.++..|-+.|+|+|...++...|..
T Consensus 259 gf~~--~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 295 (320)
T 4dll_A 259 RARL--SIQLKDMRNALATAQEIGFDAPITGLFEQLYAE 295 (320)
T ss_dssp SSBH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 1211 112345578899999999999999999886654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0025 Score=61.37 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=58.8
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||.|. +|.++|..|...|.+|+++++.. .++++.+.. +|+||.+++.+..
T Consensus 162 k~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~L~~~~~~---ADIVI~Avg~p~~ 217 (286)
T 4a5o_A 162 MDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RDLADHVSR---ADLVVVAAGKPGL 217 (286)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SCHHHHHHT---CSEEEECCCCTTC
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cCHHHHhcc---CCEEEECCCCCCC
Confidence 5799999876 89999999999999999997632 245566676 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.+|||.+...
T Consensus 218 I~------~~~vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 218 VK------GEWIKEGAIVIDVGINR 236 (286)
T ss_dssp BC------GGGSCTTCEEEECCSCS
T ss_pred CC------HHHcCCCeEEEEecccc
Confidence 22 24678999999998764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.003 Score=62.58 Aligned_cols=113 Identities=8% Similarity=0.043 Sum_probs=70.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecC-CHhHHHh-hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFH-DPESFVH-SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~-~l~~advIi~~vp~~~ 81 (484)
++|.|+|.|.+|..+++.|.+.|+ |.+.|+++++++ +.+.+.. -+.+.. +.+.+.+ .++++|.++++++++.
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~----~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~ 189 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGAN----FVHGDPTRVSDLEKANVRGARAVIVDLESDS 189 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCE----EEESCTTSHHHHHHTCSTTEEEEEECCSSHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcE----EEEeCCCCHHHHHhcChhhccEEEEcCCccH
Confidence 379999999999999999999999 999999999988 6543221 012222 3333322 2567999999998763
Q ss_pred hHHHHHHHHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
. .-.+-..+..+.+. .++.-..+. ... +.+...|+..+-.|
T Consensus 190 ~-n~~~~~~ar~~~~~~~iiar~~~~--~~~----~~l~~~G~d~vi~~ 231 (336)
T 1lnq_A 190 E-TIHCILGIRKIDESVRIIAEAERY--ENI----EQLRMAGADQVISP 231 (336)
T ss_dssp H-HHHHHHHHHTTCTTSEEEEECSSG--GGH----HHHHHTTCSEEECH
T ss_pred H-HHHHHHHHHHHCCCCeEEEEECCH--HHH----HHHHHcCCCEEECh
Confidence 2 22223333444454 555555443 222 33445676655333
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0007 Score=67.73 Aligned_cols=97 Identities=12% Similarity=0.133 Sum_probs=58.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCC-----C-cEEEEe-C-ChhH-HHHHHHHhhhcCCCCeeec-CCHhHHHhhcCC
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKG-----F-PISVYN-R-TTSK-VDETVERAKQEGNLPLYGF-HDPESFVHSIQK 69 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G-----~-~V~v~d-r-~~~~-~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~ 69 (484)
|+|+||+|+| .|.+|..+.+.|.+++ + ++..+. + +..+ ........... ..+... .+.++ ...
T Consensus 7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~--~~~~~~~~~~~~-~~~--- 80 (352)
T 2nqt_A 7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPL--AHRVVEPTEAAV-LGG--- 80 (352)
T ss_dssp CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGG--TTCBCEECCHHH-HTT---
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhccccccc--ceeeeccCCHHH-hcC---
Confidence 5567999999 9999999999999987 3 666654 2 2222 21100000000 011111 23333 333
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+|+||+|+|... ..+++..+ ..|..+||.|+..-
T Consensus 81 ~DvVf~alg~~~-s~~~~~~~----~~G~~vIDlSa~~R 114 (352)
T 2nqt_A 81 HDAVFLALPHGH-SAVLAQQL----SPETLIIDCGADFR 114 (352)
T ss_dssp CSEEEECCTTSC-CHHHHHHS----CTTSEEEECSSTTT
T ss_pred CCEEEECCCCcc-hHHHHHHH----hCCCEEEEECCCcc
Confidence 999999999874 34444333 56899999998763
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0034 Score=57.40 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=48.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHH-HhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF-VHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~-~~~l~~advIi~~vp~ 79 (484)
|||.|+| .|.+|..++..|++.|++|.+.+|++++.+.+. ... .+. ..|+.+. .+.+..+|+||.+...
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~-----~~~-~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDI-----NIL-QKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSS-----EEE-ECCGGGCCHHHHTTCSEEEECCCS
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCC-----eEE-eccccChhhhhhcCCCEEEECCcC
Confidence 5899999 599999999999999999999999998876553 110 111 1122110 0333459999998754
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=64.94 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCCh---hHHHHHHHHhhhcCCC-CeeecC--CHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTT---SKVDETVERAKQEGNL-PLYGFH--DPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~---~~~~~~~~~~~~~~~~-~~~~~~--s~~e~~~~l~~advIi 74 (484)
|+||+|+| .|.+|..+.+.|.++ .+++.....+. ..-+.+.+....-.+. ...... +.+++.+. +|+||
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~---~Dvvf 80 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPG---VDVVF 80 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTT---CSEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcC---CCEEE
Confidence 46999999 699999999999985 45766553322 2111122111100000 122222 34444344 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+|.+ ...+....+ +..|..|||.|+..
T Consensus 81 ~a~p~~-~s~~~~~~~---~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 81 LATAHE-VSHDLAPQF---LEAGCVVFDLSGAF 109 (337)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ECCChH-HHHHHHHHH---HHCCCEEEEcCCcc
Confidence 999986 334444444 45789999999875
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00045 Score=63.90 Aligned_cols=81 Identities=17% Similarity=0.289 Sum_probs=55.3
Q ss_pred CeEEEEcccHHHHHHHHHH--HhCCCcE-EEEeCChh-HHHH-HHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNI--AEKGFPI-SVYNRTTS-KVDE-TVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L--~~~G~~V-~v~dr~~~-~~~~-~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
.+++|||+|.+|..++..+ .+.|+++ .++|.+++ +... ... +.++...++++++++. .+.|++++|+|
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~------GvpV~~~~dL~~~v~~-~~Id~vIIAvP 157 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTED------GIPVYGISTINDHLID-SDIETAILTVP 157 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTT------CCBEEEGGGHHHHC-C-CSCCEEEECSC
T ss_pred CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeEC------CeEEeCHHHHHHHHHH-cCCCEEEEecC
Confidence 4799999999999999874 3457765 46799988 6432 111 2234455667777664 24899999999
Q ss_pred CCchHHHHHHHHhh
Q 011501 79 AGSPVDQTIKTLSV 92 (484)
Q Consensus 79 ~~~~v~~vl~~l~~ 92 (484)
.. ..+++.+.+..
T Consensus 158 s~-~aq~v~d~lv~ 170 (212)
T 3keo_A 158 ST-EAQEVADILVK 170 (212)
T ss_dssp GG-GHHHHHHHHHH
T ss_pred ch-hHHHHHHHHHH
Confidence 86 45666666554
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.022 Score=53.83 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=59.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||+|+|+ |.||+.++..+.+. ++++. ++|++. +++++.. ..+|+||-+.++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~----------------------dl~~~~~--~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTC----------------------CTHHHHH--TTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCC----------------------CHHHHhc--cCCcEEEEccChH
Confidence 48999996 99999999998865 88876 566541 2334333 1289999676554
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHH-HHHHHHHHHHc-CCeEEecc
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYEN-TERRQKAVAEL-GLLYLGMG 129 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~-~~~~~~~l~~~-g~~~i~~p 129 (484)
.+.+.+... +..|.-+|-++|..... ..++.+..++. ++.++-+|
T Consensus 57 -a~~~~~~~a---~~~g~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~ 103 (245)
T 1p9l_A 57 -VVMGNLEFL---IDNGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAP 103 (245)
T ss_dssp -THHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECS
T ss_pred -HHHHHHHHH---HHcCCCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEEC
Confidence 455444433 34566566666654333 33333333323 66555555
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0031 Score=58.78 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=51.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCH-hHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-QEGNLPLYGFHDP-ESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~-~e~~~~l~~advIi~~vp~ 79 (484)
.|+|.|.|. |.+|..+++.|++.|++|.+.+|++++.+.+...+. . + ...|+ +++.+.+.++|+||.+...
T Consensus 21 ~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~-----~-~~~Dl~~~~~~~~~~~D~vi~~ag~ 94 (236)
T 3e8x_A 21 GMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASD-----I-VVANLEEDFSHAFASIDAVVFAAGS 94 (236)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSE-----E-EECCTTSCCGGGGTTCSEEEECCCC
T ss_pred CCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCce-----E-EEcccHHHHHHHHcCCCEEEECCCC
Confidence 468999987 999999999999999999999999998877654321 1 1 11111 3333334458888887754
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.011 Score=57.09 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=78.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.++|.+.++.+..++|++.+.++. ++|..++.++++.| ...|++++...+.+.+.+....
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~----- 231 (287)
T 3pef_A 164 VGKGAEMKLVVNMVMGGMMACFCEGLALGEKA------GLATDAILDVIGAG-AMANPMFALKGGLIRDRNFAPA----- 231 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCCCS-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCCCC-----
Confidence 46788999999999999999999999998753 49999999999887 4578887776555544321111
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
|. +.....+++.++..|-+.|+|+|.+.++...|..
T Consensus 232 -~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pef_A 232 -FP--LKHMQKDLRLAVALGDRVGQPLVASAAANELFKG 267 (287)
T ss_dssp -SB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred -Cc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 21 1123345789999999999999999988876643
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0069 Score=60.26 Aligned_cols=97 Identities=9% Similarity=0.063 Sum_probs=58.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHh--hhcCC------------CCeeecCCHhHHHhh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERA--KQEGN------------LPLYGFHDPESFVHS 66 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~--~~~~~------------~~~~~~~s~~e~~~~ 66 (484)
|.||||+|+|.+|+.+++.|.++ +++|. +.|++++....+.+.. ...+. -.+....+++++...
T Consensus 2 mikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~ 81 (343)
T 2yyy_A 2 PAKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIED 81 (343)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGG
T ss_pred ceEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccC
Confidence 35999999999999999999887 46654 5576666554444321 00000 012222234444444
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+|+.|+|.+.. ..... ..+++.|..||+.+.
T Consensus 82 ---vDiV~eatg~~~s-~~~a~--~~~l~aG~~VI~sap 114 (343)
T 2yyy_A 82 ---ADIVVDGAPKKIG-KQNLE--NIYKPHKVKAILQGG 114 (343)
T ss_dssp ---CSEEEECCCTTHH-HHHHH--HTTTTTTCEEEECTT
T ss_pred ---CCEEEECCCcccc-HHHHH--HHHHHCCCEEEECCC
Confidence 8999999887632 22222 356777888877443
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00031 Score=65.10 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=53.8
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KGFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|+|||+|.+|..++..+.. .|+++ .++|.++++...... +.++...++++++++. +.|.|++|+|..
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~------gv~V~~~~dl~ell~~--~ID~ViIA~Ps~- 151 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR------GGVIEHVDLLPQRVPG--RIEIALLTVPRE- 151 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET------TEEEEEGGGHHHHSTT--TCCEEEECSCHH-
T ss_pred CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhc------CCeeecHHhHHHHHHc--CCCEEEEeCCch-
Confidence 479999999999999985322 26764 567999887543221 1124456677887764 489999999986
Q ss_pred hHHHHHHHHh
Q 011501 82 PVDQTIKTLS 91 (484)
Q Consensus 82 ~v~~vl~~l~ 91 (484)
...++.+.+.
T Consensus 152 ~~~ei~~~l~ 161 (211)
T 2dt5_A 152 AAQKAADLLV 161 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 3345555444
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.015 Score=57.88 Aligned_cols=101 Identities=12% Similarity=0.108 Sum_probs=62.1
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHHhhhc-CCC--CeeecCCHhHHHhhcC
Q 011501 2 VQTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKQE-GNL--PLYGFHDPESFVHSIQ 68 (484)
Q Consensus 2 ~~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~~~~~~~~~-~~~--~~~~~~s~~e~~~~l~ 68 (484)
+..||+|+|+ |.+|.+++..|+.... ++.+||.++.. ++-.......- ... ++...+++.+.++.
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~-- 100 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDG-- 100 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTT--
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCC--
Confidence 3448999996 9999999999997643 69999998642 22211111110 000 24556677776666
Q ss_pred CCcEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCC
Q 011501 69 KPRVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 69 ~advIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+ .. ++++.+.+..+..++.+|+-.||
T Consensus 101 -advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 101 -VAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp -CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -CCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 99999975322 11 22333455555556777777776
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0068 Score=55.65 Aligned_cols=69 Identities=10% Similarity=0.233 Sum_probs=47.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHH-HhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESF-VHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~-~~~l~~advIi~~vp~ 79 (484)
|||.|.|. |.+|..++..|++.|++|.+.+|++++.+.+.... +.. ..|+.+. .+.++.+|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~-------~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGAT-------VATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTT-------SEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCC-------ceEEecccccccHhhcccCCEEEECCcc
Confidence 47999987 99999999999999999999999998876553211 111 1122110 0233448998888744
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.007 Score=58.77 Aligned_cols=127 Identities=15% Similarity=0.199 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|||+|..|..++.+|++.|. +++++|.+.=....+....-.....+..-.....+.+..+ .+++-+...+..-.
T Consensus 37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~i-NP~v~v~~~~~~l~ 115 (292)
T 3h8v_A 37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNI-NPDVLFEVHNYNIT 115 (292)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHH-CTTSEEEEECCCTT
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhh-CCCcEEEEecccCC
Confidence 589999999999999999999997 7999998763333333211000000001111222222222 26676766654321
Q ss_pred HHHHHHHHhh-----hc---CCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 83 VDQTIKTLSV-----YM---EKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 83 v~~vl~~l~~-----~l---~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
..+.++.+.. .+ ..-++|||++-.. ..-..+.+.+.+.++.++.+++++
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~-~~R~~in~~c~~~~~Pli~~gv~~ 172 (292)
T 3h8v_A 116 TVENFQHFMDRISNGGLEEGKPVDLVLSCVDNF-EARMTINTACNELGQTWMESGVSE 172 (292)
T ss_dssp SHHHHHHHHHHHHHBSSSTTBCCSEEEECCSSH-HHHHHHHHHHHHHTCCEEEEEECT
T ss_pred cHHHHHHHhhhhcccccccCCCCCEEEECCcch-hhhhHHHHHHHHhCCCEEEeeeec
Confidence 1122233221 11 3568999998664 333445666777899999888775
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0036 Score=57.72 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=49.3
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEE
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVII 74 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi 74 (484)
|+ ||+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+.. ++.. ..+.+++.+.++++|+||
T Consensus 1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~Dl~d~~~~~~~~~~~d~vi 72 (227)
T 3dhn_A 1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENE--------HLKVKKADVSSLDEVCEVCKGADAVI 72 (227)
T ss_dssp --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCT--------TEEEECCCTTCHHHHHHHHTTCSEEE
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccC--------ceEEEEecCCCHHHHHHHhcCCCEEE
Confidence 54 57899998 5999999999999999999999999876433211 1111 124444444445589988
Q ss_pred EecCC
Q 011501 75 MLVKA 79 (484)
Q Consensus 75 ~~vp~ 79 (484)
.+...
T Consensus 73 ~~a~~ 77 (227)
T 3dhn_A 73 SAFNP 77 (227)
T ss_dssp ECCCC
T ss_pred EeCcC
Confidence 88744
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0084 Score=58.07 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=49.0
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCC
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQK 69 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~ 69 (484)
|+ +|+|.|+| .|.+|..++..|++.|++|.+.+|+ +++.+.+..... . ++.. ..+++++.+.++.
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~~~~~~~D~~d~~~l~~~~~~ 76 (313)
T 1qyd_A 1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQ 76 (313)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTT
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHh-C---CeEEEeCCCCCHHHHHHHHhC
Confidence 65 67899998 5999999999999999999999998 444443322111 1 1211 1244444444455
Q ss_pred CcEEEEecCC
Q 011501 70 PRVIIMLVKA 79 (484)
Q Consensus 70 advIi~~vp~ 79 (484)
+|+||.+...
T Consensus 77 ~d~vi~~a~~ 86 (313)
T 1qyd_A 77 VDVVISALAG 86 (313)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCcc
Confidence 7888777654
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.028 Score=54.08 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=78.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.++|.+.+..+..++|++.+.++. ++|..++.++.+.| ...|++++.....+.+.+...
T Consensus 164 ~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~------ 230 (287)
T 3pdu_A 164 VGQGARMKLVVNMIMGQMMTALGEGMALGRNC------GLDGGQLLEVLDAG-AMANPMFKGKGQMLLSGEFPT------ 230 (287)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHS-TTCCHHHHHHHHHHHHTCCCC------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-cccChHHHhhccccccCCCCC------
Confidence 46889999999999999999999999988753 49999999999877 357787776655544432111
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
-|. +.....+++.++..|-+.|+|+|...++...|..
T Consensus 231 ~~~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 267 (287)
T 3pdu_A 231 SFP--LKHMQKDLRLAVELGDRLGQPLHGAATANESFKR 267 (287)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 121 1223345789999999999999999988876553
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.017 Score=53.68 Aligned_cols=78 Identities=14% Similarity=0.159 Sum_probs=52.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|-|||.|.+|..-+..|.+.|.+|++++++.. .++.+.+.+ ++.... ...+ +.+..+|+||.++.++
T Consensus 32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~------~i~~i~~~~~~--~dL~~adLVIaAT~d~- 102 (223)
T 3dfz_A 32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKG------QLRVKRKKVGE--EDLLNVFFIVVATNDQ- 102 (223)
T ss_dssp CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTT------SCEEECSCCCG--GGSSSCSEEEECCCCT-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcC------CcEEEECCCCH--hHhCCCCEEEECCCCH-
Confidence 5899999999999999999999999999987654 344444432 122221 1111 1234499999887665
Q ss_pred hHHHHHHHH
Q 011501 82 PVDQTIKTL 90 (484)
Q Consensus 82 ~v~~vl~~l 90 (484)
.+...+...
T Consensus 103 ~~N~~I~~~ 111 (223)
T 3dfz_A 103 AVNKFVKQH 111 (223)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0079 Score=59.46 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=31.3
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|++++|.|.|. |.+|..++..|++.|++|++.+|++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 44 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPG 44 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCC
Confidence 34468999997 9999999999999999999999976
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.008 Score=58.10 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=32.0
Q ss_pred CC-CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MV-QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~-~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|+ +++|.|+|. |.+|..++..|++.|++|.+.+|++
T Consensus 1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence 65 678999996 9999999999999999999999974
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.021 Score=54.10 Aligned_cols=123 Identities=11% Similarity=0.215 Sum_probs=64.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|..++.+|++.|. +++++|.+.-....+..+.. .....+-.-.....+.+..+ .+++-+...+..-
T Consensus 29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~~~v~~~~~~~ 107 (251)
T 1zud_1 29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL-NPDIQLTALQQRL 107 (251)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH-CCCCEEEEEeccC
Confidence 589999999999999999999997 78899877422111111100 00000000001111111111 1444444444321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
. .+-+.++.. .-++||+++.. +..-..+.+.+.+.++.++.+.+.|
T Consensus 108 ~-~~~~~~~~~---~~DvVi~~~d~-~~~r~~l~~~~~~~~~p~i~~~~~g 153 (251)
T 1zud_1 108 T-GEALKDAVA---RADVVLDCTDN-MATRQEINAACVALNTPLITASAVG 153 (251)
T ss_dssp C-HHHHHHHHH---HCSEEEECCSS-HHHHHHHHHHHHHTTCCEEEEEEEB
T ss_pred C-HHHHHHHHh---cCCEEEECCCC-HHHHHHHHHHHHHhCCCEEEEeccc
Confidence 1 112223322 34789988764 3444445566666788888765443
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0042 Score=64.65 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=47.4
Q ss_pred CeEEEEcccHHHHHH--HHHHHh------CCCcEEEEeCChhHHHHHHH---Hhh-hcC-CCCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQNL--ALNIAE------KGFPISVYNRTTSKVDETVE---RAK-QEG-NLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~l--A~~L~~------~G~~V~v~dr~~~~~~~~~~---~~~-~~~-~~~~~~~~s~~e~~~~l~~a 70 (484)
|||+|||.|..|.+. ...++. .+.+|..+|+++++++.... ... ..+ ..++..+++.+++++. |
T Consensus 1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~g---A 77 (477)
T 3u95_A 1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEG---A 77 (477)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTT---C
T ss_pred CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCC---C
Confidence 589999999987553 223332 13479999999987654221 111 110 2246778899998887 9
Q ss_pred cEEEEec
Q 011501 71 RVIIMLV 77 (484)
Q Consensus 71 dvIi~~v 77 (484)
|+||+++
T Consensus 78 D~Vi~~~ 84 (477)
T 3u95_A 78 DFIINTA 84 (477)
T ss_dssp SEEEECC
T ss_pred CEEEECc
Confidence 9999986
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.013 Score=53.63 Aligned_cols=70 Identities=17% Similarity=0.251 Sum_probs=50.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCC-HhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHD-PESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s-~~e~~~~l~~advIi~~vp~ 79 (484)
|+|.|.| .|.+|..++..|++.|++|.+.+|++++.+.+ ... .+.. ..+ .+++.+.++++|+||.+...
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~-----~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNV-----KAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTE-----EEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCc-----eEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 4899998 79999999999999999999999998764432 000 0111 123 55555556668999888754
Q ss_pred C
Q 011501 80 G 80 (484)
Q Consensus 80 ~ 80 (484)
.
T Consensus 74 ~ 74 (219)
T 3dqp_A 74 G 74 (219)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0071 Score=60.38 Aligned_cols=98 Identities=11% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCC-CcEEEEe-CChhHHHHHHHHhhhc-------CCCCeeecC-CHhHHHhhcCCC
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKG-FPISVYN-RTTSKVDETVERAKQE-------GNLPLYGFH-DPESFVHSIQKP 70 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G-~~V~v~d-r~~~~~~~~~~~~~~~-------~~~~~~~~~-s~~e~~~~l~~a 70 (484)
+++||||+| .|.+|..+.+.|.++. +++.... .+....+.+....... ++..+...+ +++++ + .+
T Consensus 3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~---~v 78 (350)
T 2ep5_A 3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYEDH-K---DV 78 (350)
T ss_dssp CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGGG-T---TC
T ss_pred CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHHh-c---CC
Confidence 357999999 8999999999998764 3666553 2222111121110000 000122221 34443 3 39
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+||+|+|... ..+....+ +..|..|||.|+..
T Consensus 79 DvVf~atp~~~-s~~~a~~~---~~aG~~VId~s~~~ 111 (350)
T 2ep5_A 79 DVVLSALPNEL-AESIELEL---VKNGKIVVSNASPF 111 (350)
T ss_dssp SEEEECCCHHH-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred CEEEECCChHH-HHHHHHHH---HHCCCEEEECCccc
Confidence 99999998763 33333333 44678899998753
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.032 Score=53.73 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
+++|.|.|. |.+|..++..|++.|++|.+.+|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCC
Confidence 468999985 9999999999999999999999987
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.046 Score=55.80 Aligned_cols=74 Identities=15% Similarity=0.169 Sum_probs=47.3
Q ss_pred CCeEEEEcccHH-HHHHHHHHHh--C---CCcEEEEeCChhHHHHHHHH---hhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 3 QTRIGLAGLAVM-GQNLALNIAE--K---GFPISVYNRTTSKVDETVER---AKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 3 ~~~IgiIGlG~m-G~~lA~~L~~--~---G~~V~v~dr~~~~~~~~~~~---~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
++||+|||.|.. +..+...|+. . +.+|.+||+++++++..... .... ..+++.+++..+.++. ||+|
T Consensus 2 ~~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~-~~~v~~t~d~~~al~~---AD~V 77 (417)
T 1up7_A 2 HMRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKD-RFKVLISDTFEGAVVD---AKYV 77 (417)
T ss_dssp CCEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTT-SSEEEECSSHHHHHTT---CSEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhC-CeEEEEeCCHHHHhCC---CCEE
Confidence 469999999984 2222234454 3 56899999999886643221 1110 0135556677676676 9999
Q ss_pred EEecCCC
Q 011501 74 IMLVKAG 80 (484)
Q Consensus 74 i~~vp~~ 80 (484)
|++.-.+
T Consensus 78 iitagvg 84 (417)
T 1up7_A 78 IFQFRPG 84 (417)
T ss_dssp EECCCTT
T ss_pred EEcCCCC
Confidence 9998543
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.035 Score=56.40 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=75.7
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCCcEE-EEeC----------ChhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KGFPIS-VYNR----------TTSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~a 70 (484)
++|.|.|.|+||...++.|.+ .|.+|. +.|+ +++.+.++.+....-.++ +.... +.+++... .+
T Consensus 210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~--~~ 286 (415)
T 2tmg_A 210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLEL--DV 286 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTC--SC
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcC--CC
Confidence 689999999999999999999 999877 5566 666666666542100011 01122 45565442 49
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|+++-|-+...-..+. .+.+ .-++|+...|... +.+..+.+.++|+.++.
T Consensus 287 DIliP~A~~n~i~~~~----a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~P 336 (415)
T 2tmg_A 287 DILVPAALEGAIHAGN----AERI-KAKAVVEGANGPT--TPEADEILSRRGILVVP 336 (415)
T ss_dssp SEEEECSSTTSBCHHH----HTTC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEEC
T ss_pred cEEEecCCcCccCccc----HHHc-CCeEEEeCCCccc--CHHHHHHHHHCCCEEEC
Confidence 9999997765332222 2334 5678888888763 45666778899998764
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0066 Score=61.22 Aligned_cols=97 Identities=16% Similarity=0.269 Sum_probs=56.7
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCC-cEE-EEe-C-Chh-HHHHHHHH--------hhhcCCCCeeecCCHhHHHhh
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGF-PIS-VYN-R-TTS-KVDETVER--------AKQEGNLPLYGFHDPESFVHS 66 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~-v~d-r-~~~-~~~~~~~~--------~~~~~~~~~~~~~s~~e~~~~ 66 (484)
|+++|||||| .|..|.-|.+.|.++-+ ++. ++. + +.. ++.+.... +.. .+.+... +.++..+.
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~--~~~v~~~-~~~~~~~~ 93 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQ--DIVVQEC-KPEGNFLE 93 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHH--TCBCEES-SSCTTGGG
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccc--cceEEeC-chhhhccc
Confidence 6667899999 69999999999988753 553 442 2 222 12211100 000 0012111 22212344
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+||+|+|.+ ...+....+ +..|..|||.|+..
T Consensus 94 ---~Dvvf~alp~~-~s~~~~~~~---~~~G~~VIDlSa~f 127 (381)
T 3hsk_A 94 ---CDVVFSGLDAD-VAGDIEKSF---VEAGLAVVSNAKNY 127 (381)
T ss_dssp ---CSEEEECCCHH-HHHHHHHHH---HHTTCEEEECCSTT
T ss_pred ---CCEEEECCChh-HHHHHHHHH---HhCCCEEEEcCCcc
Confidence 99999999987 444444444 34789999999875
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=96.11 E-value=0.022 Score=58.24 Aligned_cols=115 Identities=13% Similarity=0.148 Sum_probs=75.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~a 70 (484)
-++|+|.|.|++|...|+.|.+.|.+|. +.|+ +.+.+.++.+....-.++ ..+. .+.+++... .+
T Consensus 235 g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~-i~~~ei~~~--~~ 311 (440)
T 3aog_A 235 GARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEP-LPAADFWGL--PV 311 (440)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEE-CCHHHHTTC--CC
T ss_pred CCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceE-cCchhhhcC--CC
Confidence 3689999999999999999999999887 6676 566666665542110001 0122 245565532 49
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
|+++-|.+...-..+ -++.+ .-++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 312 DIlvPcA~~n~i~~~----na~~l-~ak~VvEgAN~p--~t~eA~~iL~~~GI~~~P 361 (440)
T 3aog_A 312 EFLVPAALEKQITEQ----NAWRI-RARIVAEGANGP--TTPAADDILLEKGVLVVP 361 (440)
T ss_dssp SEEEECSSSSCBCTT----TGGGC-CCSEEECCSSSC--BCHHHHHHHHHHTCEEEC
T ss_pred cEEEecCCcCccchh----hHHHc-CCcEEEecCccc--cCHHHHHHHHHCCCEEEC
Confidence 999998765432222 22333 567888888876 345667788899998774
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.011 Score=60.97 Aligned_cols=98 Identities=19% Similarity=0.193 Sum_probs=65.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+||.|||+|.||+.++..++++. + +|++.|++.... +..+... .+++...|.+
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-------------------~~~~~~g----~~~~~~~Vda 70 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-------------------DVAQQYG----VSFKLQQITP 70 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-------------------CHHHHHT----CEEEECCCCT
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-------------------hHHhhcC----CceeEEeccc
Confidence 68999999999999999999864 4 688888764321 1111111 3344444433
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGV 130 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv 130 (484)
+ .+++++.. .+.++++||+.+- +.....+.+.+.+.|++|+|..+
T Consensus 71 d-nv~~~l~a---Ll~~~DvVIN~s~--~~~~l~Im~acleaGv~YlDTa~ 115 (480)
T 2ph5_A 71 Q-NYLEVIGS---TLEENDFLIDVSI--GISSLALIILCNQKGALYINAAT 115 (480)
T ss_dssp T-THHHHTGG---GCCTTCEEEECCS--SSCHHHHHHHHHHHTCEEEESSC
T ss_pred h-hHHHHHHH---HhcCCCEEEECCc--cccCHHHHHHHHHcCCCEEECCC
Confidence 3 44444433 3445699998663 44666788888899999999864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.029 Score=55.49 Aligned_cols=100 Identities=16% Similarity=0.140 Sum_probs=60.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC--c-----EEEEeCCh--hHHHHHHHHhhhc-CCC--CeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF--P-----ISVYNRTT--SKVDETVERAKQE-GNL--PLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~--~-----V~v~dr~~--~~~~~~~~~~~~~-~~~--~~~~~~s~~e~~~~l~~ 69 (484)
.+||.|+| +|.+|.+++..|+..|. + +.++|+++ ++++......... ..+ ++....+..+.++.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~d--- 79 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCC---
Confidence 46899999 79999999999998876 5 99999975 2333222111110 000 23444555555555
Q ss_pred CcEEEEecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 70 PRVIIMLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 70 advIi~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+|+||++--.+. .++++++.+..+-.++-.++..||
T Consensus 80 aDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 999999752211 133444555555434434777775
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.032 Score=58.32 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
++|.|||+|..|.+ +|+.|.+.|++|+++|..+.. .+.+.+.+. .+..-.+++. +.. +|+||.+ +|.
T Consensus 23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi-----~~~~g~~~~~-~~~---~d~vV~Spgi~~ 93 (494)
T 4hv4_A 23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGA-----QIYFHHRPEN-VLD---ASVVVVSTAISA 93 (494)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTC-----EEESSCCGGG-GTT---CSEEEECTTSCT
T ss_pred CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCC-----EEECCCCHHH-cCC---CCEEEECCCCCC
Confidence 58999999999985 999999999999999976543 344444332 1222223333 333 8999886 454
Q ss_pred Cch-HHHHHH---------HHh-hhcCCC-CEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 80 GSP-VDQTIK---------TLS-VYMEKG-DCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 80 ~~~-v~~vl~---------~l~-~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
+.. +....+ +++ ..++.. -+-|-.|+++-.++.-+...+...|.
T Consensus 94 ~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 149 (494)
T 4hv4_A 94 DNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGL 149 (494)
T ss_dssp TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcCC
Confidence 422 221111 222 223322 24555666665555556677777774
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.02 Score=54.63 Aligned_cols=87 Identities=14% Similarity=0.200 Sum_probs=54.8
Q ss_pred CCCCe-EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--e
Q 011501 1 MVQTR-IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--L 76 (484)
Q Consensus 1 M~~~~-IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~ 76 (484)
|.+.| +-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =
T Consensus 1 Ml~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~D 61 (264)
T 3tfo_A 1 MVMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA----------------G---GTALAQVLD 61 (264)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CEEEEEECC
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEcC
Confidence 54445 44455 578999999999999999999999998877765543210 0 222222 2
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+.+.++.+++.+.....+=+++|++...
T Consensus 62 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~ 91 (264)
T 3tfo_A 62 VTDRHSVAAFAQAAVDTWGRIDVLVNNAGV 91 (264)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 333345556666665544445677776543
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.02 Score=57.05 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=49.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~ 76 (484)
.|+|.|.| .|.+|..++..|++.|++|.+.+|++++. +.+...... .+... .+.+.+.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v----~~v~~D~l~d~~~l~~~~~~~d~Vi~~ 80 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNV----TLFQGPLLNNVPLMDTLFEGAHLAFIN 80 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTE----EEEESCCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCc----EEEECCccCCHHHHHHHHhcCCEEEEc
Confidence 46899998 59999999999999999999999988764 233211000 01112 2444454445569999977
Q ss_pred cCC
Q 011501 77 VKA 79 (484)
Q Consensus 77 vp~ 79 (484)
...
T Consensus 81 a~~ 83 (352)
T 1xgk_A 81 TTS 83 (352)
T ss_dssp CCS
T ss_pred CCC
Confidence 643
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.055 Score=52.96 Aligned_cols=71 Identities=14% Similarity=0.253 Sum_probs=45.9
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeC--ChhHHHH----HHHHhhhcCCCCeeecC---CHhHHHhhcCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNR--TTSKVDE----TVERAKQEGNLPLYGFH---DPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr--~~~~~~~----~~~~~~~~~~~~~~~~~---s~~e~~~~l~~ad 71 (484)
|||.|+|. |.+|.+++..|+..|+ ++.++|+ ++++.+. +....... +..+.... +..+.++. +|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~-~~~~~i~~~~d~l~~al~g---aD 76 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGT-RSDANIYVESDENLRIIDE---SD 76 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTS-CCCCEEEEEETTCGGGGTT---CS
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhc-CCCeEEEeCCcchHHHhCC---CC
Confidence 48999999 9999999999998885 6889999 7654432 22211100 00122222 13444554 99
Q ss_pred EEEEecC
Q 011501 72 VIIMLVK 78 (484)
Q Consensus 72 vIi~~vp 78 (484)
+||++.-
T Consensus 77 ~Vi~~Ag 83 (313)
T 1hye_A 77 VVIITSG 83 (313)
T ss_dssp EEEECCS
T ss_pred EEEECCC
Confidence 9999873
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0063 Score=56.07 Aligned_cols=35 Identities=17% Similarity=0.464 Sum_probs=31.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|+ .+|.|||.|.-|...|..|+++|++|+++|+++
T Consensus 1 Mt-~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~ 35 (336)
T 3kkj_A 1 MT-VPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR 35 (336)
T ss_dssp -C-CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CC-CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 54 479999999999999999999999999999875
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0099 Score=59.49 Aligned_cols=92 Identities=11% Similarity=0.237 Sum_probs=55.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC-cEEEE-eCCh--hHHHHHHH---------HhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF-PISVY-NRTT--SKVDETVE---------RAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~~~~---------~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
+|||||| .|..|.-|.+.|.++-+ ++... .++. .++..... .... +.+.. .+.+++ + .
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~---~~v~~-~~~~~~-~---~ 79 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD---MEIKP-TDPKLM-D---D 79 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT---CBCEE-CCGGGC-T---T
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc---ceEEe-CCHHHh-c---C
Confidence 4899999 69999999998887653 55443 3332 12222100 0000 01111 233332 3 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+||+|+|.+. ..+....+ +..|..+||.|+..
T Consensus 80 vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 80 VDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 999999999984 44444444 45789999999875
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0099 Score=59.49 Aligned_cols=92 Identities=11% Similarity=0.237 Sum_probs=55.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC-cEEEE-eCCh--hHHHHHHH---------HhhhcCCCCeeecCCHhHHHhhcCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF-PISVY-NRTT--SKVDETVE---------RAKQEGNLPLYGFHDPESFVHSIQK 69 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~-dr~~--~~~~~~~~---------~~~~~~~~~~~~~~s~~e~~~~l~~ 69 (484)
+|||||| .|..|.-|.+.|.++-+ ++... .++. .++..... .... +.+.. .+.+++ + .
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~---~~v~~-~~~~~~-~---~ 79 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIAD---MEIKP-TDPKLM-D---D 79 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHT---CBCEE-CCGGGC-T---T
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhccccccccccccccc---ceEEe-CCHHHh-c---C
Confidence 4899999 69999999998887653 55443 3332 12222100 0000 01111 233332 3 4
Q ss_pred CcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 70 PRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 70 advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+|+||+|+|.+. ..+....+ +..|..+||.|+..
T Consensus 80 vDvvf~a~p~~~-s~~~a~~~---~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 80 VDIIFSPLPQGA-AGPVEEQF---AKEGFPVISNSPDH 113 (359)
T ss_dssp CCEEEECCCTTT-HHHHHHHH---HHTTCEEEECSSTT
T ss_pred CCEEEECCChHH-HHHHHHHH---HHCCCEEEEcCCCc
Confidence 999999999984 44444444 45789999999875
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.042 Score=54.66 Aligned_cols=96 Identities=16% Similarity=0.259 Sum_probs=56.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhC-CCcEEEEeC---ChhHHHHHHHHhhhcCCC----------------Ceeec--CCH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEK-GFPISVYNR---TTSKVDETVERAKQEGNL----------------PLYGF--HDP 60 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~-G~~V~v~dr---~~~~~~~~~~~~~~~~~~----------------~~~~~--~s~ 60 (484)
|+||||+|.|.+|..+.+.|.++ .++|...+- +.+....+.+....-+.+ .+... .++
T Consensus 17 ~ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp 96 (354)
T 3cps_A 17 QGTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDP 96 (354)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCG
T ss_pred ceEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCCh
Confidence 56999999999999999999987 567665542 233222332211000000 11122 245
Q ss_pred hHHH---hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCC--EEEecCC
Q 011501 61 ESFV---HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGD--CIIDGGN 105 (484)
Q Consensus 61 ~e~~---~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 105 (484)
+++. .. +|+||.|+|.....+ . ...++..|. +|||.+.
T Consensus 97 ~~i~w~~~~---vDvV~eatg~~~s~e-~---a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 97 AEIPWGASG---AQIVCESTGVFTTEE-K---ASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp GGCCHHHHT---CCEEEECSSSCCSHH-H---HGGGGTTTCSEEEESSCC
T ss_pred HHCCcccCC---CCEEEECCCchhhHH-H---HHHHHHcCCcEEEEeCCC
Confidence 5431 23 899999999875433 2 234566677 8999876
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0078 Score=57.67 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=34.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
|++|+|.|.|+|.+|..++..|++.|++|++.+|++++
T Consensus 1 M~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~ 38 (286)
T 3gpi_A 1 MSLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP 38 (286)
T ss_dssp -CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 77789999999999999999999999999999998765
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.034 Score=53.61 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=37.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
+++-|+| .|-+|..++..|++.|++|++++|++++.+++.+.
T Consensus 120 k~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~ 162 (287)
T 1lu9_A 120 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADS 162 (287)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH
Confidence 5788999 99999999999999999999999999887766543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0078 Score=63.99 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=72.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
++|.|+|+|.+|..+|+.|.+.|++|.+.|.++++++++. . -+.+..+-+++.+ .++++|.++++++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~-~-------~i~gD~t~~~~L~~agi~~ad~vi~~~~~d- 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDH-V-------VVYGDATVGQTLRQAGIDRASGIIVTTNDD- 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSS-C-------EEESCSSSSTHHHHHTTTSCSEEEECCSCH-
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcC-C-------EEEeCCCCHHHHHhcCccccCEEEEECCCc-
Confidence 4799999999999999999999999999999998865542 1 1222233333333 356799999999876
Q ss_pred hHHHHHHHHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...-.+..++..+.+. .+|.-..+... .+.+...|+..+-.|
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~~~~~~------~~~l~~~G~d~vi~p 462 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARANGEEN------VDQLYAAGADFVVSN 462 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEESSTTS------HHHHHHHTCSEEEEH
T ss_pred hHHHHHHHHHHHHCCCCEEEEEECCHHH------HHHHHHcCCCEEEcc
Confidence 3333334444555555 55555544432 233445577665444
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.052 Score=55.17 Aligned_cols=110 Identities=16% Similarity=0.222 Sum_probs=76.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPR 71 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~ad 71 (484)
++|.|.|.|++|...|+.|.+.|.+|. +.|+ +.+.+.++.+... .+.. .-+.+++... .+|
T Consensus 219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g-----~v~~~~~~~~e~~~~--~~D 291 (419)
T 3aoe_E 219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATG-----SLPRLDLAPEEVFGL--EAE 291 (419)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHS-----SCSCCCBCTTTGGGS--SCS
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhC-----Ccceeeccchhhhcc--Cce
Confidence 589999999999999999999999887 7788 7777777665432 1110 1133444432 499
Q ss_pred EEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 72 VIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 72 vIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+++-|-....-..+. .+.+ +=++|+...|.. .|.+..+.+.++|+.|+.
T Consensus 292 VliP~A~~n~i~~~~----A~~l-~ak~V~EgAN~p--~t~~A~~~L~~~Gi~~~P 340 (419)
T 3aoe_E 292 VLVLAAREGALDGDR----ARQV-QAQAVVEVANFG--LNPEAEAYLLGKGALVVP 340 (419)
T ss_dssp EEEECSCTTCBCHHH----HTTC-CCSEEEECSTTC--BCHHHHHHHHHHTCEEEC
T ss_pred EEEecccccccccch----HhhC-CceEEEECCCCc--CCHHHHHHHHHCCCEEEC
Confidence 999987665332322 3334 347899998876 345667788999998874
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.1 Score=50.89 Aligned_cols=104 Identities=15% Similarity=0.244 Sum_probs=76.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+.++.+|.+.|.+.++.+..++|++.+.++. ++|..++.++.+.| ...|++++.....+.+.+.. +
T Consensus 184 ~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~------G~d~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~------~ 250 (310)
T 3doj_A 184 VGNGAKMKLIVNMIMGSMMNAFSEGLVLADKS------GLSSDTLLDILDLG-AMTNPMFKGKGPSMNKSSYP------P 250 (310)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TSCHHHHHHHHHHS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-ccccHHHHHHhhhhhcCCCC------C
Confidence 47889999999999999999999999998753 39999999999876 34677766554444332211 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
-|. +.....+++-++..|-+.|+|+|...++...|..
T Consensus 251 ~f~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 287 (310)
T 3doj_A 251 AFP--LKHQQKDMRLALALGDENAVSMPVAAAANEAFKK 287 (310)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred Ccc--HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 121 1123345678889999999999999988876653
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.042 Score=51.20 Aligned_cols=44 Identities=20% Similarity=0.399 Sum_probs=35.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
|+++++-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 1 Ms~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 45 (235)
T 3l6e_A 1 MSLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL 45 (235)
T ss_dssp --CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 66666777775 789999999999999999999999888776554
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.069 Score=52.50 Aligned_cols=75 Identities=16% Similarity=0.251 Sum_probs=47.3
Q ss_pred CC-CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCCh--hHHHHHHHHhhhcC-CC--CeeecCCHhHHHhh
Q 011501 1 MV-QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTT--SKVDETVERAKQEG-NL--PLYGFHDPESFVHS 66 (484)
Q Consensus 1 M~-~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~--~~~~~~~~~~~~~~-~~--~~~~~~s~~e~~~~ 66 (484)
|. .|||.|+|. |.+|+.++..|+..|+ +|.++|+++ ++.+.......... .+ .+....+..+.++.
T Consensus 1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~ 80 (327)
T 1y7t_A 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (327)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCC
Confidence 53 368999996 9999999999999996 899999975 22222111111000 00 12333455555554
Q ss_pred cCCCcEEEEecC
Q 011501 67 IQKPRVIIMLVK 78 (484)
Q Consensus 67 l~~advIi~~vp 78 (484)
+|+||.+..
T Consensus 81 ---~D~Vih~Ag 89 (327)
T 1y7t_A 81 ---ADYALLVGA 89 (327)
T ss_dssp ---CSEEEECCC
T ss_pred ---CCEEEECCC
Confidence 999998753
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.72 E-value=0.04 Score=54.80 Aligned_cols=95 Identities=24% Similarity=0.237 Sum_probs=58.5
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhc-CCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQE-GNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~-~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|-|||||| .|..|.-|.+.|.++-. ++.........-+.+.+....- ..+.+.. .+.+++.+. +|++|+|+|.
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~-~~~~~~~~~---~Dvvf~alp~ 88 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSE-FDPEKVSKN---CDVLFTALPA 88 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBC-CCHHHHHHH---CSEEEECCST
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEe-CCHHHhhcC---CCEEEECCCc
Confidence 35899997 69999999999998854 5555543222111121110000 0111222 245666555 9999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+ ... ++.+.+ .|..|||.|+..
T Consensus 89 ~-~s~----~~~~~~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 89 G-ASY----DLVREL-KGVKIIDLGADF 110 (351)
T ss_dssp T-HHH----HHHTTC-CSCEEEESSSTT
T ss_pred H-HHH----HHHHHh-CCCEEEECChhh
Confidence 8 333 344555 799999999875
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=95.69 E-value=0.029 Score=57.47 Aligned_cols=111 Identities=13% Similarity=0.082 Sum_probs=69.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC---cEEEEe----CC----hh-H---HHHHHHHhhhcCCCCe-eecCCHhHHHhhc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF---PISVYN----RT----TS-K---VDETVERAKQEGNLPL-YGFHDPESFVHSI 67 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~---~V~v~d----r~----~~-~---~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l 67 (484)
.+|.|+|+|.+|.+++..|.+.|. +|+++| |+ .+ . +..+....... .+. ....++.+.++.
T Consensus 187 ~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~--~~~~~~~~~L~e~l~~- 263 (439)
T 2dvm_A 187 ITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKK--TNGENIEGGPQEALKD- 263 (439)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTT--SCTTCCCSSHHHHHTT-
T ss_pred CEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhc--cccccccccHHHHhcc-
Confidence 579999999999999999999998 899999 87 32 2 21111111110 000 013456777666
Q ss_pred CCCcEEEEecCC--CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 68 QKPRVIIMLVKA--GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 68 ~~advIi~~vp~--~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+|++|-++|. +...+ .....+.++.+|+|+++-.++.. .+...+.|...+
T Consensus 264 --aDVlInaT~~~~G~~~~----e~v~~m~~~~iVfDLynP~~t~~---~~~A~~~G~~iv 315 (439)
T 2dvm_A 264 --ADVLISFTRPGPGVIKP----QWIEKMNEDAIVFPLANPVPEIL---PEEAKKAGARIV 315 (439)
T ss_dssp --CSEEEECSCCCSSSSCH----HHHTTSCTTCEEEECCSSSCSSC---HHHHHHHTCSEE
T ss_pred --CCEEEEcCCCccCCCCh----HHHHhcCCCCEEEECCCCCCcch---HHHHHHcCCeEE
Confidence 9999999997 43222 23345667889999965443333 233334466555
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.033 Score=54.08 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
||+|.|.|. |.+|..++..|++.|++|.+.+|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCc
Confidence 468999995 9999999999999999999999986
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.061 Score=56.60 Aligned_cols=113 Identities=11% Similarity=0.080 Sum_probs=68.1
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCCh--hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--c
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTT--SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--V 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~--~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--v 77 (484)
.++|-|||.|..|.+ +|+.|.+.|++|+++|.+. ...+.+.+.+. .+..-.+++.+... +|+||.+ +
T Consensus 19 ~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi-----~~~~G~~~~~~~~~---~d~vV~Spgi 90 (524)
T 3hn7_A 19 GMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGV-----TIEEGYLIAHLQPA---PDLVVVGNAM 90 (524)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTC-----EEEESCCGGGGCSC---CSEEEECTTC
T ss_pred CCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCC-----EEECCCCHHHcCCC---CCEEEECCCc
Confidence 368999999999985 7999999999999999863 33455554432 12222344444333 8999885 4
Q ss_pred CCCch-HHHHHH---------HHh-hhc-CCCC-EEEecCCCChHHHHHHHHHHHHcCC
Q 011501 78 KAGSP-VDQTIK---------TLS-VYM-EKGD-CIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 78 p~~~~-v~~vl~---------~l~-~~l-~~g~-iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
|.+.. +....+ +++ ..+ +... +-|-.|+++-.++.-+...+...|.
T Consensus 91 ~~~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~ 149 (524)
T 3hn7_A 91 KRGMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGI 149 (524)
T ss_dssp CTTSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCC
Confidence 54432 222221 222 222 2223 4555666665555556667777764
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.024 Score=57.77 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeCCh---------------hHHHHHHHHhhhcCCC-CeeecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNRTT---------------SKVDETVERAKQEGNL-PLYGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr~~---------------~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~ 66 (484)
++|.|.|.|++|...|+.|.+.|.+|. +.|.++ +.+.++.+....-.++ +.+.. +.+++...
T Consensus 213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~ 291 (421)
T 2yfq_A 213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK 291 (421)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence 579999999999999999999999887 678873 4555554432100000 00111 22344331
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.||+++-|-+.+.-..+.. +.+ ..++|+...|.. .+.+..+.+.++|+.|+.
T Consensus 292 --~~DIliP~A~~n~i~~~~A----~~l-~ak~VvEgAN~P--~t~ea~~il~~~GI~~~P 343 (421)
T 2yfq_A 292 --EYDIIVPAALENVITGERA----KTI-NAKLVCEAANGP--TTPEGDKVLTERGINLTP 343 (421)
T ss_dssp -----CEEECSCSSCSCHHHH----TTC-CCSEEECCSSSC--SCHHHHHHHHHHTCEEEC
T ss_pred --CccEEEEcCCcCcCCcccH----HHc-CCeEEEeCCccc--cCHHHHHHHHHCCCEEEC
Confidence 3899999877653333332 333 578898888876 346667778889998764
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.027 Score=53.98 Aligned_cols=83 Identities=13% Similarity=0.149 Sum_probs=53.9
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 81 (484)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.+
T Consensus 26 ~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~d~~ 86 (279)
T 3sju_A 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA----------------G---HDVDGSSCDVTSTD 86 (279)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHH
Confidence 355555 588999999999999999999999998877665533210 0 223222 233444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=+++|++...
T Consensus 87 ~v~~~~~~~~~~~g~id~lv~nAg~ 111 (279)
T 3sju_A 87 EVHAAVAAAVERFGPIGILVNSAGR 111 (279)
T ss_dssp HHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCC
Confidence 5666666665555455777776543
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.046 Score=52.97 Aligned_cols=102 Identities=14% Similarity=0.060 Sum_probs=70.9
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCC-----ccchhhHHHHHHHHccCCC-CC
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGC-----IIRAIFLDRIKKAYDRNPD-LA 394 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gc-----ii~s~ll~~i~~~~~~~~~-~~ 394 (484)
.+.++.+|+++|.+.+..+..++|++.+.++. ++|..+++++|+..- .-+|++.+ .+. +.
T Consensus 174 ~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~------G~d~~~~~~~~~~~~~i~~~~~~s~~~~--------~~~~~~ 239 (296)
T 3qha_A 174 PGAGTRMKLARNMLTFTSYAAACEAMKLAEAA------GLDLQALGRVVRHTDALTGGPGAIMVRD--------NMKDLE 239 (296)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHCCGGGGCCCS--------SCSCCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHhhhcchHHHHhcCcccCHHhh--------chhhhh
Confidence 47889999999999999999999999998753 499999977776421 22343321 111 11
Q ss_pred CcccchhHHH--HH-HhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 395 NVLVDPEFAK--EI-IERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 395 ~ll~~~~~~~--~~-~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
. .++-|.- .+ .-...+++-++..|.+.|+|+|.+..+...|.
T Consensus 240 ~--~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~ 284 (296)
T 3qha_A 240 P--DNFLYQPFLHTRGLGEKDLSLALALGEAVSVDLPLARLAYEGLA 284 (296)
T ss_dssp T--TSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred c--CCCCCchhhhhhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 1 2233332 00 23455678888999999999999999987554
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.036 Score=53.85 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=46.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
++|.|+|. |.+|..++..|++.|++|.+.+|+++ +.+.+.+... . +..+.. ..+.+++.+.++.+|+||.+.+
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~-~-~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS-L-GAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH-T-TCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc-C-CCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 37999995 99999999999999999999999875 3322211100 0 000111 1234444444455777777764
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0047 Score=61.38 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=54.9
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCC---CcEEEEe-C-ChhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEE
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKG---FPISVYN-R-TTSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVI 73 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G---~~V~v~d-r-~~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advI 73 (484)
|.++||+|+| .|.+|..+.+.|.+++ +++..++ + +..+.-.+. +. .+.... +++. .+. +|+|
T Consensus 1 ~~~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~--~~-----~i~~~~~~~~~-~~~---vDvV 69 (336)
T 2r00_A 1 SQQFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFN--GK-----TVRVQNVEEFD-WSQ---VHIA 69 (336)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEET--TE-----EEEEEEGGGCC-GGG---CSEE
T ss_pred CCccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeec--Cc-----eeEEecCChHH-hcC---CCEE
Confidence 3467999999 9999999999999884 3555554 2 221100000 00 122211 2222 233 9999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+|+|.. ...+.... ++..|..+||.|+..
T Consensus 70 f~a~g~~-~s~~~a~~---~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 70 LFSAGGE-LSAKWAPI---AAEAGVVVIDNTSHF 99 (336)
T ss_dssp EECSCHH-HHHHHHHH---HHHTTCEEEECSSTT
T ss_pred EECCCch-HHHHHHHH---HHHcCCEEEEcCCcc
Confidence 9999876 33333333 345688999998864
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0072 Score=60.24 Aligned_cols=42 Identities=17% Similarity=0.323 Sum_probs=35.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHH
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDET 42 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~ 42 (484)
|++|+|.|.| .|.+|..++..|++. |++|++.+|++++...+
T Consensus 22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~ 65 (372)
T 3slg_A 22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL 65 (372)
T ss_dssp -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh
Confidence 4567999998 699999999999998 99999999998765443
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.046 Score=53.24 Aligned_cols=101 Identities=9% Similarity=0.060 Sum_probs=70.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCc-cchhhHHHHHHHHccCCCCCCcccch
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCI-IRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gci-i~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
++++.+| .+.++.++.++|++.+.++. ++|..++.++++.+.. .+|++++.....+.+++....
T Consensus 174 g~g~~~k----~~~~~~~~~~~Ea~~la~~~------Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~----- 238 (306)
T 3l6d_A 174 AFATVLH----AHAFAAMVTFFEAVGAGDRF------GLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGD----- 238 (306)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTT-----
T ss_pred cHHHHHH----HHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCC-----
Confidence 5666666 67788999999999987753 4999999999987632 578887776555544321100
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
.|. +.-...+++.++..|-+.|+|+|...++...|..
T Consensus 239 ~~~--~~~~~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~ 275 (306)
T 3l6d_A 239 QAR--LDVHADAFAHIAQSLHAQGVWTPVFDAVCQVVQR 275 (306)
T ss_dssp SSB--HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred ccc--HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 111 1112345688899999999999999999876653
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.025 Score=52.51 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=48.8
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~ 75 (484)
|++++|.|.| .|.+|..+++.|++. |++|++.+|++++.+.+. . +..... ..+.+++.+.++.+|+||.
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~---~---~~~~~~~D~~d~~~~~~~~~~~d~vi~ 75 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIG---G---EADVFIGDITDADSINPAFQGIDALVI 75 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTT---C---CTTEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcC---C---CeeEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4567899998 699999999999999 899999999987765431 0 001111 1233444333445888887
Q ss_pred ecC
Q 011501 76 LVK 78 (484)
Q Consensus 76 ~vp 78 (484)
+..
T Consensus 76 ~a~ 78 (253)
T 1xq6_A 76 LTS 78 (253)
T ss_dssp CCC
T ss_pred ecc
Confidence 764
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.014 Score=58.39 Aligned_cols=34 Identities=9% Similarity=0.216 Sum_probs=26.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC----CcE-EEEeCCh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG----FPI-SVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G----~~V-~v~dr~~ 36 (484)
+++|||||+|.||..++..|.+.. .+| .++|++.
T Consensus 4 ~i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~ 42 (358)
T 1ebf_A 4 VVNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER 42 (358)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB
T ss_pred eEEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh
Confidence 358999999999999999999863 344 4567543
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.14 Score=44.62 Aligned_cols=120 Identities=9% Similarity=0.052 Sum_probs=73.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhc-CCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNL-PLYGFHDPESFVHSI-QKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l-~~advIi~~vp~ 79 (484)
.+|.-||+|. | .++..+++. +.+|+++|.+++.++.+.+.....+-. ++....+..+..... ...|+|++.-+.
T Consensus 27 ~~vldiG~G~-G-~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~~ 104 (178)
T 3hm2_A 27 ETLWDIGGGS-G-SIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPDVIFIGGGL 104 (178)
T ss_dssp EEEEEESTTT-T-HHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCSEEEECC-T
T ss_pred CeEEEeCCCC-C-HHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCCEEEECCcc
Confidence 3688899997 4 344555555 679999999998887766543321100 232333433333322 458999987655
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.. ..+++.+...+++|..++-.. ..+.......+.+...+..+...
T Consensus 105 ~~--~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 105 TA--PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp TC--TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHCCEEEEE
T ss_pred cH--HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcCCeeEEE
Confidence 42 667788888888877666433 33445556666777777665544
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.039 Score=53.33 Aligned_cols=73 Identities=12% Similarity=0.342 Sum_probs=57.8
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++.|||-+ .+|.+||..|.+.+..|+++... +.++++.+++ +|+||.++..+..
T Consensus 180 k~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~---------------------T~dl~~~~~~---ADIvV~A~G~p~~ 235 (303)
T 4b4u_A 180 KHAVVVGRSAILGKPMAMMLLQANATVTICHSR---------------------TQNLPELVKQ---ADIIVGAVGKAEL 235 (303)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT---------------------CSSHHHHHHT---CSEEEECSCSTTC
T ss_pred CEEEEEeccccccchHHHHHHhcCCEEEEecCC---------------------CCCHHHHhhc---CCeEEeccCCCCc
Confidence 579999965 47999999999999999998643 2356666776 9999999977643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+. ..++++|.+|||.+..
T Consensus 236 i~------~d~vk~GavVIDVGin 253 (303)
T 4b4u_A 236 IQ------KDWIKQGAVVVDAGFH 253 (303)
T ss_dssp BC------GGGSCTTCEEEECCCB
T ss_pred cc------cccccCCCEEEEecee
Confidence 22 2468999999999865
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0072 Score=60.59 Aligned_cols=92 Identities=9% Similarity=0.137 Sum_probs=53.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCc---EEEEeCChhHHHHHHHHhhhcCCCCeeec-CCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFP---ISVYNRTTSKVDETVERAKQEGNLPLYGF-HDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~---V~v~dr~~~~~~~~~~~~~~~~~~~~~~~-~s~~e~~~~l~~advIi~~v 77 (484)
++||+||| .|..|.-|.+.|.+++|+ +.........-+.+.-.+. ..... .+.++ ++.+|+||+|+
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~-----~~~~~~~~~~~----~~~~Dvvf~a~ 72 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETA----FEGVDIALFSA 72 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTE-----EEEEEECCTTT----TTTCSEEEECS
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCC-----CceEeeCCHHH----hcCCCEEEECC
Confidence 45999999 799999999999998773 3333321110000000000 01111 12222 23499999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|.. ...+....+ +..|..|||.|+..
T Consensus 73 ~~~-~s~~~a~~~---~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 73 GSS-TSAKYAPYA---VKAGVVVVDNTSYF 98 (366)
T ss_dssp CHH-HHHHHHHHH---HHTTCEEEECSSTT
T ss_pred ChH-hHHHHHHHH---HHCCCEEEEcCCcc
Confidence 876 334444333 45788999999864
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.029 Score=53.66 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp~ 79 (484)
|+|.|.| .|.+|..++..|.+. |++|.+.+|++++...+...+. .+.. ..+++++.+.++.+|+||.+...
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v-----~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKV-----SVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTB-----EEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCC-----EEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4799998 599999999999998 9999999999887544322111 0111 12444455555568888887654
Q ss_pred C
Q 011501 80 G 80 (484)
Q Consensus 80 ~ 80 (484)
.
T Consensus 76 ~ 76 (289)
T 3e48_A 76 I 76 (289)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0099 Score=59.08 Aligned_cols=90 Identities=13% Similarity=0.125 Sum_probs=53.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC---cEEEE-eCC-hhHHHHHHHHhhhcCCCCeeecC-CHhHHHhhcCCCcEEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF---PISVY-NRT-TSKVDETVERAKQEGNLPLYGFH-DPESFVHSIQKPRVIIM 75 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~---~V~v~-dr~-~~~~~~~~~~~~~~~~~~~~~~~-s~~e~~~~l~~advIi~ 75 (484)
++||+|+| .|.+|..+.+.|.+.+| ++... +++ ..+.-.+. +. .+...+ ++++ .+. +|+||+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~--g~-----~i~~~~~~~~~-~~~---~DvV~~ 74 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFA--ES-----SLRVGDVDSFD-FSS---VGLAFF 74 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEET--TE-----EEECEEGGGCC-GGG---CSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccC--Cc-----ceEEecCCHHH-hcC---CCEEEE
Confidence 47999999 89999999999987665 44444 432 11100000 00 111111 2222 233 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+|.. ...+.+..+ +..|..+||.|...
T Consensus 75 a~g~~-~s~~~a~~~---~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 75 AAAAE-VSRAHAERA---RAAGCSVIDLSGAL 102 (340)
T ss_dssp CSCHH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cCCcH-HHHHHHHHH---HHCCCEEEEeCCCC
Confidence 99876 333333333 44678899998765
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.021 Score=59.07 Aligned_cols=108 Identities=13% Similarity=0.108 Sum_probs=73.9
Q ss_pred CCeEEEEccc----HHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLA----VMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG----~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
..+|+|||.+ .+|..+.++|.+.| +.|+.+|+..+.+ . ++..+.|+.++.+. +|++++++
T Consensus 8 p~siAVvGas~~~~~~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~-------G~~~y~sl~~lp~~---~Dlavi~v 72 (457)
T 2csu_A 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----Q-------GVKAYKSVKDIPDE---IDLAIIVV 72 (457)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----T-------TEECBSSTTSCSSC---CSEEEECS
T ss_pred CCeEEEECcCCCCCchHHHHHHHHHHcCCCEEEEECCCCCeE-----C-------CEeccCCHHHcCCC---CCEEEEec
Confidence 4579999998 88999999999985 6777777653221 0 36778888888765 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCCh-HH-----HHHHHHHHHHcCCeEEe
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY-EN-----TERRQKAVAELGLLYLG 127 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~-~~-----~~~~~~~l~~~g~~~i~ 127 (484)
|.. .+.++++++...- -..+|+-.+.... .+ .+++.+.+++.|+.+++
T Consensus 73 p~~-~~~~~v~e~~~~G-i~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viG 126 (457)
T 2csu_A 73 PKR-FVKDTLIQCGEKG-VKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (457)
T ss_dssp CHH-HHHHHHHHHHHHT-CCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred CHH-HHHHHHHHHHHcC-CCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEc
Confidence 986 6777777766531 2234444433321 11 44556666777888774
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.21 Score=45.23 Aligned_cols=119 Identities=10% Similarity=0.072 Sum_probs=75.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC-Ceee-cCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL-PLYG-FHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~-~~~~-~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.-||+|. | .++..+++.+.+|+++|.+++.++.+.+.....+-. ++.. ..+..+........|+|++....
T Consensus 57 ~~vLDlGcG~-G-~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~-- 132 (204)
T 3njr_A 57 ELLWDIGGGS-G-SVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG-- 132 (204)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC--
T ss_pred CEEEEecCCC-C-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc--
Confidence 4688899987 4 345556666899999999999887766543221100 1322 34555544444458999976532
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+ +++.+...+++|-.++-.+ ..+....+..+.+.+.|......
T Consensus 133 ~~~-~l~~~~~~LkpgG~lv~~~-~~~~~~~~~~~~l~~~g~~i~~i 177 (204)
T 3njr_A 133 SQA-LYDRLWEWLAPGTRIVANA-VTLESETLLTQLHARHGGQLLRI 177 (204)
T ss_dssp CHH-HHHHHHHHSCTTCEEEEEE-CSHHHHHHHHHHHHHHCSEEEEE
T ss_pred cHH-HHHHHHHhcCCCcEEEEEe-cCcccHHHHHHHHHhCCCcEEEE
Confidence 345 7888888888876555332 33466667777788877655443
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.012 Score=59.06 Aligned_cols=34 Identities=24% Similarity=0.609 Sum_probs=31.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|||.|||.|..|..+|..|+++|++|+++++++.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 6999999999999999999999999999998754
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.057 Score=55.42 Aligned_cols=114 Identities=11% Similarity=0.062 Sum_probs=66.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHH--HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--C
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKV--DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--K 78 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~--~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p 78 (484)
.++|.|||+|..|.+.|+.|++.|++|+++|...... ..+. .+. .+..-....+.++. +|.||++. |
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~-----~~~~g~~~~~~~~~---~d~vV~s~gi~ 75 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAV-----ERHTGSLNDEWLMA---ADLIVASPGIA 75 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTS-----CEEESSCCHHHHHT---CSEEEECTTSC
T ss_pred CCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCC-----EEEECCCcHHHhcc---CCEEEeCCCCC
Confidence 4689999999999999999999999999999765321 1122 221 22211222444444 89988873 3
Q ss_pred CCc-hHHHHH----------HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeE
Q 011501 79 AGS-PVDQTI----------KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 79 ~~~-~v~~vl----------~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~ 125 (484)
... .+.... +-+...++...|-|-.|+++-.++.-+...+.+.|...
T Consensus 76 ~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~ 133 (439)
T 2x5o_A 76 LAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGVNV 133 (439)
T ss_dssp TTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCE
Confidence 222 222111 11112233334445556666555555666777777554
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.053 Score=54.36 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=52.9
Q ss_pred CeEEEEc-ccHHHHHHHH-HHHhCCC---cEEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAG-LAVMGQNLAL-NIAEKGF---PISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~-~L~~~G~---~V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||||+| .|.+|..+.+ .|.++++ .+..+.. +..+ .+...... ...+....+++++ +. +|+||.|+
T Consensus 2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~~~~g~--~i~~~~~~~~~~~-~~---~DvVf~a~ 73 (367)
T 1t4b_A 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAPSFGGT--TGTLQDAFDLEAL-KA---LDIIVTCQ 73 (367)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCCGGGTC--CCBCEETTCHHHH-HT---CSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--CccccCCC--ceEEEecCChHHh-cC---CCEEEECC
Confidence 6999999 9999999999 5666665 3344433 2211 11000000 1112222345554 44 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCC--EEEecCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD--CIIDGGNE 106 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~--iiId~st~ 106 (484)
|.. ...+....+. ..|. +|||.|+.
T Consensus 74 g~~-~s~~~a~~~~---~~G~k~vVID~ss~ 100 (367)
T 1t4b_A 74 GGD-YTNEIYPKLR---ESGWQGYWIDAASS 100 (367)
T ss_dssp CHH-HHHHHHHHHH---HTTCCCEEEECSST
T ss_pred Cch-hHHHHHHHHH---HCCCCEEEEcCChh
Confidence 875 3344444443 3454 99999876
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.023 Score=57.06 Aligned_cols=100 Identities=13% Similarity=0.088 Sum_probs=67.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh-------hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT-------SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~-------~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
.||-|+|.|..|.++|+.+...|. +|+++|++. +.+..+.+......+ ......+++|+++. +|++|=
T Consensus 189 ~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~-~~~~~~~L~eav~~---ADV~IG 264 (398)
T 2a9f_A 189 VSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTN-REFKSGTLEDALEG---ADIFIG 264 (398)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHS-CTTCCCSCSHHHHT---TCSEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccC-cccchhhHHHHhcc---CCEEEe
Confidence 589999999999999999999998 999999873 222222221111000 01124578888887 998877
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT 111 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~ 111 (484)
+..++...++ +...+.++.+|+++||-.|+.+
T Consensus 265 ~Sapgl~T~E----mVk~Ma~~pIIfalsNPt~E~~ 296 (398)
T 2a9f_A 265 VSAPGVLKAE----WISKMAARPVIFAMANPIPEIY 296 (398)
T ss_dssp CCSTTCCCHH----HHHTSCSSCEEEECCSSSCSSC
T ss_pred cCCCCCCCHH----HHHhhCCCCEEEECCCCCccCC
Confidence 7554433344 4455668999999999876444
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.036 Score=53.26 Aligned_cols=71 Identities=15% Similarity=0.201 Sum_probs=47.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChhHHH--HHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-FPISVYNRTTSKVD--ETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~--~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~ 76 (484)
+++|.|.|. |.+|..++..|++.| ++|.+.+|++++.. .+...+. .+.. ..+++.+.+.++.+|+||.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~-----~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGA-----EVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTC-----EEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCC-----EEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 468999987 999999999999998 99999999987542 2222111 0111 12444444444558888887
Q ss_pred cC
Q 011501 77 VK 78 (484)
Q Consensus 77 vp 78 (484)
..
T Consensus 80 a~ 81 (299)
T 2wm3_A 80 TN 81 (299)
T ss_dssp CC
T ss_pred CC
Confidence 63
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=95.26 E-value=0.051 Score=51.36 Aligned_cols=80 Identities=9% Similarity=0.105 Sum_probs=51.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+|-|-| .+-+|.++|+.|++.|++|.+.||++++.+++.+++.+ +..+-.=+.+.+++
T Consensus 4 ~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~---------------------~~~~~~Dv~~~~~v 62 (247)
T 3ged_A 4 GVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN---------------------LFYFHGDVADPLTL 62 (247)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT---------------------EEEEECCTTSHHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC---------------------EEEEEecCCCHHHH
Confidence 344445 57799999999999999999999998877665543211 11111123344456
Q ss_pred HHHHHHHhhhcCCCCEEEecCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st 105 (484)
+.+++++.....+=+++|+...
T Consensus 63 ~~~v~~~~~~~g~iDiLVNNAG 84 (247)
T 3ged_A 63 KKFVEYAMEKLQRIDVLVNNAC 84 (247)
T ss_dssp HHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHcCCCCEEEECCC
Confidence 6666666665555567777543
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.067 Score=56.72 Aligned_cols=96 Identities=13% Similarity=0.116 Sum_probs=61.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH-hhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~-~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~ 80 (484)
++|-|+|.|.+|..++..|.+.|++|.+.|.++++++.+.+. +.. -+.+..+-++..+. ++++|.+++ ++++
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~----~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D 202 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFK----VVYGSPTDAHVLAGLRVAAARSIIA-NLSD 202 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSE----EEESCTTCHHHHHHTTGGGCSEEEE-CSCH
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCe----EEEeCCCCHHHHHhcCcccCCEEEE-eCCc
Confidence 469999999999999999999999999999999998887765 321 12222233333332 456999987 4443
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.....+-..+..+..-.+|.-..+
T Consensus 203 -~~n~~~~~~ar~~~~~~iiar~~~ 226 (565)
T 4gx0_A 203 -PDNANLCLTVRSLCQTPIIAVVKE 226 (565)
T ss_dssp -HHHHHHHHHHHTTCCCCEEEECSS
T ss_pred -HHHHHHHHHHHHhcCceEEEEECC
Confidence 333222223333444455554443
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.053 Score=51.46 Aligned_cols=82 Identities=11% Similarity=0.160 Sum_probs=56.8
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| |.+-+|.++|+.|++.|.+|.++||++++++++.++....+ .+++.+ =+.+.
T Consensus 8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g-------------------~~~~~~~~Dvt~~ 68 (254)
T 4fn4_A 8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG-------------------KEVLGVKADVSKK 68 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCCCH
Confidence 66676 45679999999999999999999999998877765432210 222222 23455
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++++.+++++.....+=+++|+...
T Consensus 69 ~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 69 KDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCc
Confidence 5677777777666555578887654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.051 Score=51.63 Aligned_cols=82 Identities=15% Similarity=0.181 Sum_probs=56.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.+| |.+-+|.++|+.|++.|.+|.+.||++++.++..++....+ .++..+. +.+.
T Consensus 10 KvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dv~~~ 70 (255)
T 4g81_D 10 KTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG-------------------YDAHGVAFDVTDE 70 (255)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT-------------------CCEEECCCCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCCH
Confidence 78888 56789999999999999999999999988777665432211 1222111 2344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++++.+++++.....+=+++|+...
T Consensus 71 ~~v~~~~~~~~~~~G~iDiLVNNAG 95 (255)
T 4g81_D 71 LAIEAAFSKLDAEGIHVDILINNAG 95 (255)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCC
Confidence 5667777777766555577777644
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.047 Score=57.45 Aligned_cols=125 Identities=8% Similarity=0.078 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+.-- ....+-.-+....+.+..+ .+++-+.+.+.
T Consensus 33 ~~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~l-Np~v~v~~~~~-- 109 (531)
T 1tt5_A 33 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 109 (531)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CeEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHh-CCCCeEEEeCC--
Confidence 589999999999999999999998 799999876544455432110 0000000011122223322 24554555544
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.+...++.....+..=++||+++- .+..-..+.+.+...++.++.+.+.|
T Consensus 110 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~ln~~c~~~~iplI~~~~~G 159 (531)
T 1tt5_A 110 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYG 159 (531)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHTTCCEEEEEEET
T ss_pred CcchhhhhhHHHhcCCCEEEEeCC-CHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 244433323344555689999854 44444556667777888888876554
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.097 Score=51.71 Aligned_cols=124 Identities=13% Similarity=0.026 Sum_probs=66.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCC-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG- 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~- 80 (484)
.+|.|||+|..|..+|.+|+..|. +++++|.+.-....+..+..- ....+..-+....+.+..+ .+++-+...+..
T Consensus 35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~i-nP~v~v~~~~~~i 113 (340)
T 3rui_A 35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLSI 113 (340)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHh-CCCCEEEEEeccc
Confidence 589999999999999999999997 788999875222222111000 0000000011122222222 145555554321
Q ss_pred --------ch--HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 --------SP--VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 --------~~--v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
.. ...-.+.+...+.+-++|+|++-... .-..+.+.+...++.++.+.
T Consensus 114 ~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~-tR~lin~~c~~~~~plI~aa 171 (340)
T 3rui_A 114 PMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRE-SRWLPSLLSNIENKTVINAA 171 (340)
T ss_dssp CCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTG-GGHHHHHHHHHTTCEEEEEE
T ss_pred cccCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHH-HHHHHHHHHHHcCCcEEEee
Confidence 00 01111223334455689999877653 33445566677888888763
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=56.50 Aligned_cols=70 Identities=13% Similarity=0.197 Sum_probs=44.3
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+|+|.|.| .|.+|..++..|++.|++|++.+|++...+ +. ... -+...-+.+++.+.++++|+||-+...
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~--~~~----~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-IN--DYE----YRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------CCE----EEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CC--ceE----EEEccccHHHHHHhhcCCCEEEEcccc
Confidence 46899998 699999999999999999999999955433 22 100 011111133333334458888877643
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.074 Score=51.00 Aligned_cols=80 Identities=13% Similarity=0.143 Sum_probs=52.2
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+++| | .+-+|.++|+.|++.|.+|.+.+|+.+++++..++... . +-.+-.=+.+.++
T Consensus 30 KvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------------~---~~~~~~Dv~~~~~ 89 (273)
T 4fgs_A 30 KIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------------G---AVGIQADSANLAE 89 (273)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---CEEEECCTTCHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eEEEEecCCCHHH
Confidence 67777 4 56799999999999999999999999988776554311 0 1111122334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~s 104 (484)
++.+++++.....+=+++|+..
T Consensus 90 v~~~~~~~~~~~G~iDiLVNNA 111 (273)
T 4fgs_A 90 LDRLYEKVKAEAGRIDVLFVNA 111 (273)
T ss_dssp HHHHHHHHHHHHSCEEEEEECC
T ss_pred HHHHHHHHHHHcCCCCEEEECC
Confidence 6666666665443335666654
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.13 Score=49.92 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=36.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.++|.|.|. |.+|..++..|++.|++|++.+|++++.+.+.+
T Consensus 11 ~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (342)
T 1y1p_A 11 GSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHH
Confidence 368999986 999999999999999999999999887655543
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.073 Score=50.29 Aligned_cols=85 Identities=14% Similarity=0.125 Sum_probs=56.3
Q ss_pred CeEEEEcc-c-HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCC
Q 011501 4 TRIGLAGL-A-VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKA 79 (484)
Q Consensus 4 ~~IgiIGl-G-~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 79 (484)
+++-|.|. | -+|..+|+.|+++|++|++.+|+.++.++..++.... ...++.++ =+.+
T Consensus 23 k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------------------~~~~~~~~~~Dl~~ 84 (266)
T 3o38_A 23 KVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADL------------------GLGRVEAVVCDVTS 84 (266)
T ss_dssp CEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------------------CSSCEEEEECCTTC
T ss_pred CEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------------------CCCceEEEEeCCCC
Confidence 45777788 7 4999999999999999999999998877665533210 00223332 2334
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.++.+++.+.....+=+++|++...
T Consensus 85 ~~~v~~~~~~~~~~~g~id~li~~Ag~ 111 (266)
T 3o38_A 85 TEAVDALITQTVEKAGRLDVLVNNAGL 111 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCCcEEEECCCc
Confidence 445666666666555455777776554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.12 Score=53.44 Aligned_cols=114 Identities=13% Similarity=0.217 Sum_probs=76.6
Q ss_pred CeEEEEcccH----------HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh----------hcCCCCeeecCCHhHH
Q 011501 4 TRIGLAGLAV----------MGQNLALNIAEKGFPISVYNRTTSKVDETVERAK----------QEGNLPLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~----------mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~----------~~~~~~~~~~~s~~e~ 63 (484)
++|+|+|+.. -...++..|.+.|.+|.+||+.-...+ +..... .. ++..+.++.+.
T Consensus 330 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 405 (467)
T 2q3e_A 330 KKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQ-IVVDLSHPGVSEDDQVSR---LVTISKDPYEA 405 (467)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHH-HHHHHCC------CHHHH---HEEECSSHHHH
T ss_pred CEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHH-HhhhhccccccccccccC---ceeecCCHHHH
Confidence 5899999875 788999999999999999998633211 111100 00 14566788888
Q ss_pred HhhcCCCcEEEEecCCCchHHH-HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQ-TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
++. +|.|++++..+ +.+. -.+.+...+....+|+|+-+.... ..+.+.+.|+.|.+.+
T Consensus 406 ~~~---ad~~vi~t~~~-~f~~~~~~~~~~~~~~~~~i~D~r~~~~~----~~~~~~~~g~~~~~ig 464 (467)
T 2q3e_A 406 CDG---AHAVVICTEWD-MFKELDYERIHKKMLKPAFIFDGRRVLDG----LHNELQTIGFQIETIG 464 (467)
T ss_dssp HTT---CSEEEECSCCG-GGGGSCHHHHHHHSCSSCEEEESSCTTTT----CHHHHHHHTCEEEETT
T ss_pred HhC---CcEEEEecCCh-hhhcCCHHHHHHhcCCCCEEEeCCCcCCc----hHHHHHhcCcEEEEeC
Confidence 776 99999999886 3332 134555556555669999888643 1234456688887654
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.05 Score=53.50 Aligned_cols=36 Identities=11% Similarity=0.130 Sum_probs=32.1
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
++|+|.|.| .|.+|..++..|++.|++|++.+|++.
T Consensus 24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~ 60 (351)
T 3ruf_A 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFST 60 (351)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSS
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 457899998 599999999999999999999999654
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.079 Score=49.95 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=33.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 10 ~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~ 50 (255)
T 4eso_A 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIRE 50 (255)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455565 5889999999999999999999999988776654
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=94.96 E-value=0.12 Score=48.51 Aligned_cols=81 Identities=12% Similarity=0.165 Sum_probs=53.2
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 6 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 6 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... . ...+-.=+.+.+.++
T Consensus 12 ~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~d~~~v~ 71 (248)
T 3op4_A 12 ALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD-----------------N---GKGMALNVTNPESIE 71 (248)
T ss_dssp EEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-----------------c---ceEEEEeCCCHHHHH
Confidence 44445 58899999999999999999999998887766543211 0 112222233444566
Q ss_pred HHHHHHhhhcCCCCEEEecCCC
Q 011501 85 QTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 85 ~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+++++.....+=+++|++...
T Consensus 72 ~~~~~~~~~~g~iD~lv~nAg~ 93 (248)
T 3op4_A 72 AVLKAITDEFGGVDILVNNAGI 93 (248)
T ss_dssp HHHHHHHHHHCCCSEEEECCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 6666666555455777776554
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.08 Score=50.19 Aligned_cols=69 Identities=12% Similarity=0.252 Sum_probs=47.7
Q ss_pred eEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 5 RIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
+|.|.|. |.+|..++..|++. |++|.+.+|++++.+.+...+. .+.. ..+.+++.+.++.+|+||.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~-----~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGI-----TVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTC-----EEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCC-----eEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4788886 99999999999998 9999999999877655443211 0111 1244445444556888887754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.06 Score=53.26 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=37.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 169 ~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~G 212 (348)
T 2d8a_A 169 KSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212 (348)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 369999999999999999888999 9999999998877766544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.049 Score=56.10 Aligned_cols=109 Identities=13% Similarity=0.269 Sum_probs=76.0
Q ss_pred CeEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
++|+|+|+. .=...++..|.+.|.+|.+||+.... ....... ++..+.++++.++. +|.|
T Consensus 323 ~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~-----~~~~~~~~~~~~~~---ad~v 392 (446)
T 4a7p_A 323 KTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVE--QASKMLT-----DVEFVENPYAAADG---ADAL 392 (446)
T ss_dssp CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHH--HHGGGCS-----SCCBCSCHHHHHTT---BSEE
T ss_pred CEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCH--hHHHhcC-----CceEecChhHHhcC---CCEE
Confidence 589999987 56789999999999999999987532 2221111 35667888888887 9999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
++++..++.-.--.+.+...+ ++.+|+|+-+.... +.+.+.|+.|.+.+
T Consensus 393 vi~t~~~~f~~~d~~~~~~~~-~~~~i~D~r~~~~~------~~~~~~g~~y~~iG 441 (446)
T 4a7p_A 393 VIVTEWDAFRALDLTRIKNSL-KSPVLVDLRNIYPP------AELERAGLQYTGVG 441 (446)
T ss_dssp EECSCCTTTTSCCHHHHHTTB-SSCBEECSSCCSCH------HHHHHTTCBCCCSS
T ss_pred EEeeCCHHhhcCCHHHHHHhc-CCCEEEECCCCCCH------HHHHhcCCEEEEec
Confidence 999987642111124455545 35689999998743 23456788876554
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.031 Score=54.70 Aligned_cols=71 Identities=13% Similarity=0.210 Sum_probs=46.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
+|+|.|.| .|.+|..++..|++.|++|++.+|++++.+.+..... .+.. ..+.+++.+.++++|+||-+..
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEP-----ECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCC-----EEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCe-----EEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 36899998 5999999999999999999999998775443321110 0111 1234444444445788877653
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.07 Score=50.41 Aligned_cols=86 Identities=20% Similarity=0.350 Sum_probs=53.2
Q ss_pred CCCCeEEEE-c-ccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--
Q 011501 1 MVQTRIGLA-G-LAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM-- 75 (484)
Q Consensus 1 M~~~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~-- 75 (484)
|+..|+.+| | .|-+|..+|+.|++.|++|.+. +|+.++.+++.+..... . .++.++
T Consensus 1 M~~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~ 61 (258)
T 3oid_A 1 MEQNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL----------------G---VKVLVVKA 61 (258)
T ss_dssp --CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT----------------T---CCEEEEEC
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc----------------C---CcEEEEEc
Confidence 544454444 5 6889999999999999999885 99988776665432210 0 223322
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
=+.+.+.++.+++.+.....+=+++|++..
T Consensus 62 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg 91 (258)
T 3oid_A 62 NVGQPAKIKEMFQQIDETFGRLDVFVNNAA 91 (258)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 233444566666666655545577777654
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.088 Score=51.97 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=36.2
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CC-cEEEEeCChhHHHHHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEK-GF-PISVYNRTTSKVDETVE 44 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~-G~-~V~v~dr~~~~~~~~~~ 44 (484)
.++|-|.| .|.+|..++..|++. |+ +|.+++|++.+...+.+
T Consensus 21 ~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~ 65 (344)
T 2gn4_A 21 NQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAM 65 (344)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHH
Confidence 36899998 599999999999999 97 99999999887766554
|
| >2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A | Back alignment and structure |
|---|
Probab=94.88 E-value=0.11 Score=52.00 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=29.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC---CcEEEE-eC-ChhHHHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG---FPISVY-NR-TTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~~~~ 44 (484)
+||||+|.|.+|..+.+.|.+++ ++|... |+ +++....+.+
T Consensus 3 ikVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~ 48 (380)
T 2d2i_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLE 48 (380)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHH
T ss_pred cEEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhc
Confidence 59999999999999999998873 565544 44 4454444443
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=94.87 E-value=0.11 Score=51.27 Aligned_cols=40 Identities=13% Similarity=0.277 Sum_probs=29.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC---CcEEEE-eC-ChhHHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG---FPISVY-NR-TTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G---~~V~v~-dr-~~~~~~~~~ 43 (484)
.||||+|.|.+|..+.+.|.+++ ++|... |+ +++....+.
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~ 47 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLL 47 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHh
Confidence 59999999999999999999873 565544 54 555444444
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=94.81 E-value=0.43 Score=45.72 Aligned_cols=103 Identities=11% Similarity=0.108 Sum_probs=71.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.+++...|.+.|++.+..+..+.|++.+.++. + ++..++.+.+..+. ..|+.+........++.-....-
T Consensus 168 ~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~----G--~~~~~~~~~~~~~~-~~s~~~~~~~~~~l~~~~~~g~~--- 237 (299)
T 1vpd_A 168 IGAGNVTKLANQVIVALNIAAMSEALTLATKA----G--VNPDLVYQAIRGGL-AGSTVLDAKAPMVMDRNFKPGFR--- 237 (299)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHTTST-TCCHHHHHHHHHHHTTCCCCSSB---
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCHHHHHHHHHccC-CCCHHHHHhhhHhhcCCCCCCCC---
Confidence 36788899999999999999999999987653 3 89999999998873 45666554333222221111110
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
.+ .....++.++..|-+.|+|+|...+....+.
T Consensus 238 -~~----~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~ 270 (299)
T 1vpd_A 238 -ID----LHIKDLANALDTSHGVGAQLPLTAAVMEMMQ 270 (299)
T ss_dssp -HH----HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred -hH----HHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 11 1112457899999999999999988877554
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.047 Score=55.44 Aligned_cols=174 Identities=11% Similarity=0.119 Sum_probs=101.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcE-EEEeCC----------hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPI-SVYNRT----------TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V-~v~dr~----------~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
++|.|-|.|++|...|+.|.+.|.+| .+.|.+ .+.+.++.+....-.++..+ .-+.+++... .||+
T Consensus 222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~-~~~~~~i~~~--~~DI 298 (424)
T 3k92_A 222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTD-VITNEELLEK--DCDI 298 (424)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSC-CBCHHHHHHS--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcE-EecCccceec--cccE
Confidence 57999999999999999999999986 567776 44444443221100000011 1245565543 4999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc--CCCCHHhhhcCCccccCCCHH
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG--VSGGEEGARYGPSLMPGGSFE 150 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--v~gg~~~a~~g~~i~~gg~~~ 150 (484)
.+-|-....-..+ -.+.+ +-++|+...|.. .+.+..+.+.++|+.|+..- -.||.. -.
T Consensus 299 liPcA~~n~I~~~----~a~~l-~ak~V~EgAN~p--~t~eA~~iL~~rGI~~~PD~~aNAGGV~-------------vS 358 (424)
T 3k92_A 299 LVPAAISNQITAK----NAHNI-QASIVVERANGP--TTIDATKILNERGVLLVPDILASAGGVT-------------VS 358 (424)
T ss_dssp EEECSCSSCBCTT----TGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEECHHHHTTHHHH-------------HH
T ss_pred EeecCcccccChh----hHhhc-CceEEEcCCCCC--CCHHHHHHHHHCCCEEECchHhcCCCEE-------------ee
Confidence 9988765532222 22334 567888888886 34666788899999887532 222221 12
Q ss_pred HHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHH
Q 011501 151 AYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQV 221 (484)
Q Consensus 151 ~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~ 221 (484)
.+|.++.. ..- .+ . ..-+..-+...+...+.+.+..+++.+ +++.+...+
T Consensus 359 ~~E~~qn~----~~~--------~w-~-------~eeV~~~l~~~m~~~~~~v~~~a~~~~-~~~~~aA~~ 408 (424)
T 3k92_A 359 YFEWVQNN----QGY--------YW-S-------EEEVAEKLRSVMVSSFETIYQTAATHK-VDMRLAAYM 408 (424)
T ss_dssp HHHHHHHH----HTC--------CC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHH
T ss_pred hhHHHhcc----ccc--------CC-C-------HHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHH
Confidence 33333222 110 11 0 123444455555566677888888887 887765544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.19 Score=49.98 Aligned_cols=124 Identities=9% Similarity=0.094 Sum_probs=67.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh-cCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ-EGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~-~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|..++.+|+..|. +++++|.+.-....+..+..- ....+..-.....+.+..+ .+++-+...+..-
T Consensus 119 ~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~-np~v~v~~~~~~i 197 (353)
T 3h5n_A 119 AKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKR-NSEISVSEIALNI 197 (353)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHH-CCCCeEEEeeccc
Confidence 589999999999999999999997 799999875322222211000 0000000011111212211 1444444443321
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.-.. .+.. +..-++|||++-.....-..+.+.+.+.++.++.+.+.|
T Consensus 198 ~~~~---~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~g 244 (353)
T 3h5n_A 198 NDYT---DLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYVN 244 (353)
T ss_dssp CSGG---GGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEET
T ss_pred Cchh---hhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 1000 1223 556789999875543244445566777888888776543
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.1 Score=48.70 Aligned_cols=87 Identities=23% Similarity=0.358 Sum_probs=53.5
Q ss_pred CCCCeEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe-
Q 011501 1 MVQTRIGLA-G-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML- 76 (484)
Q Consensus 1 M~~~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~- 76 (484)
|.+.|+.+| | .|-+|..+|+.|++.|++|.+.++ ++++.+++.+..... . .++.++.
T Consensus 1 Ml~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~ 61 (246)
T 3osu_A 1 MKMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK----------------G---VDSFAIQA 61 (246)
T ss_dssp CCCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---SCEEEEEC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc----------------C---CcEEEEEc
Confidence 544455555 4 688999999999999999998876 555555544332110 1 2333332
Q ss_pred -cCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 -VKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 -vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+.+.++.+++++.....+=+++|++...
T Consensus 62 Dv~d~~~v~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 3osu_A 62 NVADADEVKAMIKEVVSQFGSLDVLVNNAGI 92 (246)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 334445666666666555555788877654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=94.74 E-value=0.099 Score=48.89 Aligned_cols=84 Identities=12% Similarity=0.101 Sum_probs=55.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... . .++.++. +.+.
T Consensus 10 k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 70 (253)
T 3qiv_A 10 KVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD----------------G---GTAISVAVDVSDP 70 (253)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTSH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 3456666 488999999999999999999999998877766543210 1 2233322 2333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+++|++...
T Consensus 71 ~~~~~~~~~~~~~~g~id~li~~Ag~ 96 (253)
T 3qiv_A 71 ESAKAMADRTLAEFGGIDYLVNNAAI 96 (253)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 45566666666555555778877654
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.11 Score=48.69 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=34.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 14 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 55 (260)
T 3awd_A 14 RVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVE 55 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3566775 5899999999999999999999999877665543
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.25 Score=44.36 Aligned_cols=116 Identities=8% Similarity=0.021 Sum_probs=74.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
.+|--||+|. |. ++..+++.+ .+|+++|.+++.++.+.+.....+-.++.. ..+..+....+...|+|++..+..
T Consensus 42 ~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~ 119 (204)
T 3e05_A 42 LVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSGG 119 (204)
T ss_dssp CEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCTT
T ss_pred CEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCCc
Confidence 4688899986 44 445555555 789999999998877765432211002322 233333333334589999876654
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
....+++.+...+++|..++-... ......+..+.+.+.|+
T Consensus 120 -~~~~~l~~~~~~LkpgG~l~~~~~-~~~~~~~~~~~l~~~g~ 160 (204)
T 3e05_A 120 -MLEEIIDAVDRRLKSEGVIVLNAV-TLDTLTKAVEFLEDHGY 160 (204)
T ss_dssp -CHHHHHHHHHHHCCTTCEEEEEEC-BHHHHHHHHHHHHHTTC
T ss_pred -CHHHHHHHHHHhcCCCeEEEEEec-ccccHHHHHHHHHHCCC
Confidence 678888999888888776654332 23455666777788885
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.17 Score=47.40 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=55.2
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 81 (484)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... ... ..+..+..-+ .+..
T Consensus 14 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~--~~~~~~~~D~~~~~~~ 77 (252)
T 3f1l_A 14 IILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINE--------------ETG--RQPQWFILDLLTCTSE 77 (252)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------hcC--CCceEEEEecccCCHH
Confidence 455555 57899999999999999999999999887766543211 000 0123333333 3344
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=+++|++...
T Consensus 78 ~~~~~~~~~~~~~g~id~lv~nAg~ 102 (252)
T 3f1l_A 78 NCQQLAQRIAVNYPRLDGVLHNAGL 102 (252)
T ss_dssp HHHHHHHHHHHHCSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5666666666655555778876554
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.086 Score=49.77 Aligned_cols=83 Identities=8% Similarity=0.084 Sum_probs=53.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 81 (484)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+..
T Consensus 31 ~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 91 (262)
T 3rkr_A 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----------------G---GEAESHACDLSHSD 91 (262)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------------C---CceeEEEecCCCHH
Confidence 455666 589999999999999999999999998877665533210 0 222222 233334
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=+++|++...
T Consensus 92 ~v~~~~~~~~~~~g~id~lv~~Ag~ 116 (262)
T 3rkr_A 92 AIAAFATGVLAAHGRCDVLVNNAGV 116 (262)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCc
Confidence 5556666665544455677776554
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=94.69 E-value=0.069 Score=50.33 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=54.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 7 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~ 67 (257)
T 3imf_A 7 KVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF----------------P---GQILTVQMDVRNT 67 (257)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS----------------T---TCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 3455555 588999999999999999999999998877766533110 0 122222 23344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|++..
T Consensus 68 ~~v~~~~~~~~~~~g~id~lv~nAg 92 (257)
T 3imf_A 68 DDIQKMIEQIDEKFGRIDILINNAA 92 (257)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4566666666655545577887655
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.11 Score=51.38 Aligned_cols=97 Identities=9% Similarity=0.202 Sum_probs=54.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh---C-CCcEEEE-eC-ChhHHHHHHHHhhhcCCC----------------Ceeec--CC
Q 011501 4 TRIGLAGLAVMGQNLALNIAE---K-GFPISVY-NR-TTSKVDETVERAKQEGNL----------------PLYGF--HD 59 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~---~-G~~V~v~-dr-~~~~~~~~~~~~~~~~~~----------------~~~~~--~s 59 (484)
.||||+|.|.+|..+.+.|.+ + .++|... |+ +++....+.+.....|.+ .+... .+
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~d 82 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERS 82 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCC
Confidence 599999999999999999988 5 4566544 44 445444444311000000 11221 24
Q ss_pred HhHHH-hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCC--CEEEecCC
Q 011501 60 PESFV-HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKG--DCIIDGGN 105 (484)
Q Consensus 60 ~~e~~-~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g--~iiId~st 105 (484)
++++. .. ..+|+||.|+|.....+. .... +..| .+|||.+.
T Consensus 83 p~~l~~~~-~~vDvV~e~tg~~~s~e~-a~~~---l~~GakkVVId~~a 126 (339)
T 2x5j_O 83 LQSLPWRE-LGVDVVLDCTGVYGSREH-GEAH---IAAGAKKVLFSHPG 126 (339)
T ss_dssp GGGCCHHH-HTCSEEEECSSSCCSHHH-HHHH---HHTTCSEEEESSCC
T ss_pred hHHCcccc-cCCCEEEECCCccccHHH-HHHH---HHcCCCEEEEeccc
Confidence 44431 10 038999999988754333 3332 3334 36888765
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.023 Score=57.28 Aligned_cols=83 Identities=10% Similarity=0.120 Sum_probs=59.8
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
..||-|||. |+.|.+-+..+...|. .|+++|+++... +. . .+++. . +|+||-|+.
T Consensus 214 ~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~-----~------~~~i~-~---aDivIn~vl 272 (394)
T 2qrj_A 214 KPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR------GG-----P------FDEIP-Q---ADIFINCIY 272 (394)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT------CS-----C------CTHHH-H---SSEEEECCC
T ss_pred CCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc------CC-----c------hhhHh-h---CCEEEECcC
Confidence 358999999 9999999999999998 999999886221 11 1 13433 4 999999998
Q ss_pred CCchHHHHH-HHHhhhc-CCCCEEEecCCC
Q 011501 79 AGSPVDQTI-KTLSVYM-EKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~v~~vl-~~l~~~l-~~g~iiId~st~ 106 (484)
-+...-.++ ++.+..+ ++|.+|||.+.-
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA~D 302 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVSAD 302 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETTCC
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEecC
Confidence 532221222 4555667 899999999754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.079 Score=52.87 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=57.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|.|+|.|.+|...++.+...|.+|++.++++++.+.+.+..... .+.-..+.+.+.+.....|+||-++.....+
T Consensus 189 ~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~---~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~ 265 (366)
T 1yqd_A 189 KHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGAD---SFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL 265 (366)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCS---EEEETTCHHHHHHTTTCEEEEEECCSSCCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCc---eEEeccCHHHHHHhhCCCCEEEECCCcHHHH
Confidence 4699999999999999999999999999999998877665322110 0111222222222122467777777654333
Q ss_pred HHHHHHHhhhcCCCCEEEecCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st 105 (484)
+..+ +.+.++-.++..+.
T Consensus 266 ~~~~----~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 266 LPLF----GLLKSHGKLILVGA 283 (366)
T ss_dssp HHHH----HHEEEEEEEEECCC
T ss_pred HHHH----HHHhcCCEEEEEcc
Confidence 4333 33334444555443
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.14 Score=51.35 Aligned_cols=104 Identities=14% Similarity=0.131 Sum_probs=59.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC--c---EEEEeCChhH----HHHHHHHhhhcC-CC--CeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF--P---ISVYNRTTSK----VDETVERAKQEG-NL--PLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~--~---V~v~dr~~~~----~~~~~~~~~~~~-~~--~~~~~~s~~e~~~~l~~a 70 (484)
+||+||| .|.+|.+++..|+..+. + +.++|.+.+. ++...-...... .+ ++...++..+..+. +
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~d---a 109 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---V 109 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---C
T ss_pred CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCC---C
Confidence 5899999 79999999999998765 2 7776544332 222221111100 00 23445555555555 9
Q ss_pred cEEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCCChHHHH
Q 011501 71 RVIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNEWYENTE 112 (484)
Q Consensus 71 dvIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~ 112 (484)
|+||++--.+ .. ++++...+..+..++.+|+..|| |-++.
T Consensus 110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN--PvD~~ 164 (375)
T 7mdh_A 110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTN 164 (375)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhHH
Confidence 9999975322 11 22222344454456778887776 44543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.12 Score=48.95 Aligned_cols=84 Identities=11% Similarity=0.141 Sum_probs=54.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
++|-|.| .|.+|..++..|++.|++|++.+|++++.+++.++.... . .++.++ =+.+.
T Consensus 32 k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dl~~~ 92 (272)
T 1yb1_A 32 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 92 (272)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc----------------C---CeEEEEEeeCCCH
Confidence 4577776 589999999999999999999999988766654432110 0 222222 22333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=++||++...
T Consensus 93 ~~v~~~~~~~~~~~g~iD~li~~Ag~ 118 (272)
T 1yb1_A 93 EDIYSSAKKVKAEIGDVSILVNNAGV 118 (272)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCc
Confidence 45556666665555455778877654
|
| >3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.19 Score=49.91 Aligned_cols=118 Identities=13% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhC-CCcEEE--EeCChhHHHHHHHHhhhcCCCCeeec---CC--------------
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEK-GFPISV--YNRTTSKVDETVERAKQEGNLPLYGF---HD-------------- 59 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~v--~dr~~~~~~~~~~~~~~~~~~~~~~~---~s-------------- 59 (484)
|.+++|+|+| +|.+|..-...+.++ .++|.. .++|.+++.+...+... +.... .+
T Consensus 1 M~~k~i~ILGsTGSIG~~tldVi~~~~~~~vvaL~a~~n~~~l~~q~~~f~p----~~v~v~~~~~~~~~l~~~~~G~~~ 76 (376)
T 3a06_A 1 MEERTLVILGATGSIGTQTLDVLKKVKGIRLIGISFHSNLELAFKIVKEFNV----KNVAITGDVEFEDSSINVWKGSHS 76 (376)
T ss_dssp --CEEEEEETTTSHHHHHHHHHHHHSCSEEEEEEEESSCHHHHHHHHHHHTC----CEEEECSSCCCCCSSSEEEESTTH
T ss_pred CCcceEEEECCCCHHHHHHHHHHHhCCCeEEEEEEccCCHHHHHHHHHHcCC----CEEEEccHHHHHHHHHHHccCHHH
Confidence 5556899999 699999988888887 567664 57998887776654421 11111 11
Q ss_pred HhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH-HHHHHHHHHHHcCCeEEe
Q 011501 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE-NTERRQKAVAELGLLYLG 127 (484)
Q Consensus 60 ~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~-~~~~~~~~l~~~g~~~i~ 127 (484)
+.+++.. ..+|+|+.+++....+...+..+. .|+.|.-.....-- .-..+.+.+++.|..++.
T Consensus 77 l~el~~~-~~~D~Vv~AivG~aGL~ptlaAi~----aGK~vaLANKEsLV~aG~li~~~a~~~g~~llP 140 (376)
T 3a06_A 77 IEEMLEA-LKPDITMVAVSGFSGLRAVLASLE----HSKRVCLANKESLVCGGFLVKKKLKEKGTELIP 140 (376)
T ss_dssp HHHHHHH-HCCSEEEECCCSTTHHHHHHHHHH----HCSEEEECCSHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred HHHHhcC-CCCCEEEEEeeCHHHHHHHHHHHH----CCCEEEEeChHHHHhhHHHHHHHHHHcCCEEEE
Confidence 2455532 348999999999888777765553 45666554432111 112234444556776653
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=0.089 Score=49.07 Aligned_cols=41 Identities=20% Similarity=0.313 Sum_probs=34.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 12 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (255)
T 1fmc_A 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD 53 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 4566666 5899999999999999999999999887665544
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.15 Score=47.78 Aligned_cols=83 Identities=12% Similarity=0.206 Sum_probs=53.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.|. |-+|..+|+.|++.|++|++.+|++++.+++.++... . ...+..=+.+.+.
T Consensus 10 k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 69 (261)
T 3n74_A 10 KVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGD-----------------A---ALAVAADISKEAD 69 (261)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTSHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCC-----------------c---eEEEEecCCCHHH
Confidence 35666764 7899999999999999999999999887776543210 0 1122222333345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 70 ~~~~~~~~~~~~g~id~li~~Ag~ 93 (261)
T 3n74_A 70 VDAAVEAALSKFGKVDILVNNAGI 93 (261)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEECCcc
Confidence 556666665544445677776543
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.12 Score=54.71 Aligned_cols=124 Identities=15% Similarity=0.040 Sum_probs=66.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC-
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG- 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~- 80 (484)
.+|.|||+|..|..+|.+|+..|. +++++|.+.=....+..+.. .....+..-+....+.+..+ .+++-+...+..
T Consensus 327 arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~i-NP~V~v~~~~~~I 405 (615)
T 4gsl_A 327 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI-FPLMDATGVKLSI 405 (615)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHH-CTTCEEEEECCCC
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhh-CCCcEEEEeeccc
Confidence 589999999999999999999997 79999987522222211100 00000000011122222222 155555554321
Q ss_pred --------chHHHHH--HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 81 --------SPVDQTI--KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 81 --------~~v~~vl--~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...+..+ +.+...+..-++|||++-.. ..-..+...+...++-++.+.
T Consensus 406 pm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~-~tR~~ln~~c~~~~~PlI~aa 463 (615)
T 4gsl_A 406 PMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSR-ESRWLPSLLSNIENKTVINAA 463 (615)
T ss_dssp CCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSG-GGTHHHHHHHHHTTCEEEEEE
T ss_pred cccCccccchhhhcCCHHHHHHHhhcCCEEEecCCCH-HHHHHHHHHHHHcCCeEEEEE
Confidence 0101111 22333344568999987664 333345566677788888763
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.13 Score=49.00 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=55.1
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... -.. ...+..=+.+...
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dv~d~~~ 91 (270)
T 3ftp_A 29 QVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQA--------------GLE---GRGAVLNVNDATA 91 (270)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH--------------TCC---CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCc---EEEEEEeCCCHHH
Confidence 45555 4 588999999999999999999999988877665432210 001 2233333444455
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 92 v~~~~~~~~~~~g~iD~lvnnAg~ 115 (270)
T 3ftp_A 92 VDALVESTLKEFGALNVLVNNAGI 115 (270)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555455777776543
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.16 Score=47.23 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=54.4
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~~~ 81 (484)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... -. ....++..-+ .+..
T Consensus 16 ~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~--~~~~~~~~d~d~~~~~ 79 (247)
T 3i1j_A 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSA--------------GQ--PQPLIIALNLENATAQ 79 (247)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------TS--CCCEEEECCTTTCCHH
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc--------------CC--CCceEEEeccccCCHH
Confidence 455556 588999999999999999999999998877765543211 00 0022222222 3334
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=+++|++...
T Consensus 80 ~~~~~~~~~~~~~g~id~lv~nAg~ 104 (247)
T 3i1j_A 80 QYRELAARVEHEFGRLDGLLHNASI 104 (247)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHhCCCCCEEEECCcc
Confidence 5556666665555455777776554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.12 Score=48.12 Aligned_cols=84 Identities=10% Similarity=0.075 Sum_probs=55.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 6 k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 66 (247)
T 3lyl_A 6 KVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK----------------G---FKARGLVLNISDI 66 (247)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CceEEEEecCCCH
Confidence 3455565 588999999999999999999999998877665433210 0 222222 23344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++++.....+=+++|++...
T Consensus 67 ~~~~~~~~~~~~~~~~id~li~~Ag~ 92 (247)
T 3lyl_A 67 ESIQNFFAEIKAENLAIDILVNNAGI 92 (247)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666666655455788877654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=94.53 E-value=0.05 Score=51.74 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=48.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhC--CCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~vp 78 (484)
|+|.|.|. |.+|..++..|++. |++|.+.+|++++.+.+...+. .+.. ..+.+++.+.++++|+||.+..
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~-----~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGV-----EVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTC-----EEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCC-----eEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 46889986 99999999999998 9999999999877665543211 0111 1244444444555888887654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=94.52 E-value=0.17 Score=47.52 Aligned_cols=85 Identities=9% Similarity=0.053 Sum_probs=53.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 2 VQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 2 ~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
..+++-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.++.. .. ...+..=+.+.
T Consensus 4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~ 63 (254)
T 1hdc_A 4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG-----------------DA---ARYQHLDVTIE 63 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG-----------------GG---EEEEECCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------------Cc---eeEEEecCCCH
Confidence 3346777765 899999999999999999999999887665543210 01 11222222333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~~~g~iD~lv~nAg~ 89 (254)
T 1hdc_A 64 EDWQRVVAYAREEFGSVDGLVNNAGI 89 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45556666555544444677776543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.18 Score=47.34 Aligned_cols=83 Identities=11% Similarity=0.150 Sum_probs=53.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|+.++.+++.+.... . ...+-.=+.+.+.
T Consensus 9 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~D~~~~~~ 68 (259)
T 4e6p_A 9 KSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGP-----------------A---AYAVQMDVTRQDS 68 (259)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------------T---EEEEECCTTCHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------------C---ceEEEeeCCCHHH
Confidence 3466666 58899999999999999999999998887665543210 0 1112222333345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 69 v~~~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 69 IDAAIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCc
Confidence 566666666555555777776554
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.52 E-value=0.28 Score=48.51 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=36.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 173 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG 216 (356)
T 1pl8_A 173 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIG 216 (356)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC
Confidence 479999999999999888888898 8999999998877665443
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.50 E-value=0.052 Score=52.10 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=52.6
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCCch
Q 011501 6 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAGSP 82 (484)
Q Consensus 6 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~~~ 82 (484)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++. +.+.+.
T Consensus 11 vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~~ 71 (280)
T 3tox_A 11 AIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG----------------G---GEAAALAGDVGDEAL 71 (280)
T ss_dssp EEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT----------------T---CCEEECCCCTTCHHH
T ss_pred EEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCHHH
Confidence 44445 588999999999999999999999998877766543210 0 2222221 233345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 72 v~~~~~~~~~~~g~iD~lvnnAg~ 95 (280)
T 3tox_A 72 HEALVELAVRRFGGLDTAFNNAGA 95 (280)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556666665554455777776553
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.14 Score=47.12 Aligned_cols=40 Identities=15% Similarity=0.320 Sum_probs=33.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+|-|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 7 ~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (234)
T 2ehd_A 7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAA 47 (234)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 466665 6899999999999999999999999887665543
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.072 Score=49.16 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=34.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTN 43 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3566776 4789999999999999999999999988777654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.16 Score=52.42 Aligned_cols=99 Identities=15% Similarity=0.244 Sum_probs=67.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.+|-|+|.|.+|..+|+.|. .+++|.+.++++++++.+.+...+. .-+.+..+..++.. .++.+|+++.++.++
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~~--~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~D- 311 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELENT--IVFCGDAADQELLTEENIDQVDVFIALTNED- 311 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTTS--EEEESCTTCHHHHHHTTGGGCSEEEECCSCH-
T ss_pred cEEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCCc--eEEeccccchhhHhhcCchhhcEEEEcccCc-
Confidence 57999999999999999985 5699999999999999988765421 00122233344443 345699998888765
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
...-+..-++..+...++|.-..+.
T Consensus 312 e~Ni~~~llAk~~gv~kvIa~vn~~ 336 (461)
T 4g65_A 312 ETNIMSAMLAKRMGAKKVMVLIQRG 336 (461)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred HHHHHHHHHHHHcCCcccccccccc
Confidence 4444445555556666666655543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.14 Score=47.81 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=52.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
+++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.++.... . .++.++. +.+.
T Consensus 8 k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----------------~---~~~~~~~~Dv~~~ 68 (247)
T 2jah_A 8 KVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA----------------G---AKVHVLELDVADR 68 (247)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEECCCCCH
Confidence 3566665 588999999999999999999999988776655432110 0 2222222 2333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|++..
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nAg 93 (247)
T 2jah_A 69 QGVDAAVASTVEALGGLDILVNNAG 93 (247)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCC
Confidence 4555556555554444467777654
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=94.42 E-value=0.02 Score=53.15 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=32.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChhHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKV 39 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~ 39 (484)
.++|.|.| .|.+|..++..|++.|+ +|.+.+|++++.
T Consensus 18 ~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 18 NKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred CCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 46799998 69999999999999999 999999987653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.066 Score=48.18 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=34.4
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
.+|.|+| .|.+|..+++.+...|.+|++.++++++.+.+.
T Consensus 40 ~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~ 80 (198)
T 1pqw_A 40 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS 80 (198)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4688999 699999999999999999999999988765543
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.12 Score=49.03 Aligned_cols=84 Identities=13% Similarity=0.215 Sum_probs=52.5
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cC
Q 011501 4 TRIGLA-G-LAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VK 78 (484)
Q Consensus 4 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp 78 (484)
.|+.+| | .|-+|..+|+.|++.|++|.+. +|+++..+.+.+..... . .++.++. +.
T Consensus 26 ~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dl~ 86 (272)
T 4e3z_A 26 TPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES----------------G---GEAVAIPGDVG 86 (272)
T ss_dssp SCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT----------------T---CEEEEEECCTT
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc----------------C---CcEEEEEcCCC
Confidence 345555 4 6889999999999999999775 88887766655432110 0 2333332 23
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+.++.+++.+.....+=+++|++...
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~li~nAg~ 114 (272)
T 4e3z_A 87 NAADIAAMFSAVDRQFGRLDGLVNNAGI 114 (272)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCC
Confidence 3345666666666555455777776553
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.23 Score=50.24 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=36.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.+
T Consensus 215 ~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG 258 (404)
T 3ip1_A 215 DNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELG 258 (404)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC
Confidence 369999999999999888888999 8999999999887666544
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.1 Score=51.13 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=30.8
Q ss_pred CC-CCeEEEEc-ccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 011501 1 MV-QTRIGLAG-LAVMGQNLALNIAEK--GFPISVYNRTT 36 (484)
Q Consensus 1 M~-~~~IgiIG-lG~mG~~lA~~L~~~--G~~V~v~dr~~ 36 (484)
|+ ||+|.|.| .|.+|..++..|++. |++|++.+|++
T Consensus 1 Ms~m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~ 40 (348)
T 1oc2_A 1 MSQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLT 40 (348)
T ss_dssp --CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred CCcCcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 65 57899998 699999999999998 89999999875
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=94.34 E-value=0.14 Score=48.37 Aligned_cols=82 Identities=16% Similarity=0.302 Sum_probs=54.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCCc
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAGS 81 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 81 (484)
.+-|.|. |-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.+
T Consensus 13 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~Dv~~~~ 73 (264)
T 3ucx_A 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT----------------G---RRALSVGTDITDDA 73 (264)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEcCCCCHH
Confidence 4556664 77999999999999999999999998877765533210 0 223332 233444
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.++.+++++.....+=+++|++..
T Consensus 74 ~v~~~~~~~~~~~g~id~lv~nAg 97 (264)
T 3ucx_A 74 QVAHLVDETMKAYGRVDVVINNAF 97 (264)
T ss_dssp HHHHHHHHHHHHTSCCSEEEECCC
T ss_pred HHHHHHHHHHHHcCCCcEEEECCC
Confidence 566666666665555577887653
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.1 Score=49.03 Aligned_cols=83 Identities=8% Similarity=0.031 Sum_probs=49.4
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..++. -.. ...+..=+.+.+.+
T Consensus 9 ~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------------~~~---~~~~~~Dv~~~~~v 68 (257)
T 3tpc_A 9 VFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL-----------------GAA---VRFRNADVTNEADA 68 (257)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh-----------------CCc---eEEEEccCCCHHHH
Confidence 355555 588999999999999999999999987765443211 011 22333333444556
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.+++.+.....+=+++|++....
T Consensus 69 ~~~~~~~~~~~g~id~lv~nAg~~ 92 (257)
T 3tpc_A 69 TAALAFAKQEFGHVHGLVNCAGTA 92 (257)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCC
Confidence 666666665554557788776543
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.15 Score=48.71 Aligned_cols=86 Identities=16% Similarity=0.139 Sum_probs=55.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++.... -.. ...+-.=+.+.+.
T Consensus 33 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~--------------~~~---~~~~~~Dl~d~~~ 95 (276)
T 3r1i_A 33 KRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV--------------GGK---ALPIRCDVTQPDQ 95 (276)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT--------------TCC---CEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------------CCe---EEEEEcCCCCHHH
Confidence 3455666 588999999999999999999999988877665533210 000 2222222344445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 96 v~~~~~~~~~~~g~iD~lvnnAg~ 119 (276)
T 3r1i_A 96 VRGMLDQMTGELGGIDIAVCNAGI 119 (276)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666666555455777776554
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=94.32 E-value=0.12 Score=48.67 Aligned_cols=86 Identities=12% Similarity=0.095 Sum_probs=52.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-CCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAG-LAVMGQNLALNIAE-KGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~-~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|-|.| .|.+|..+++.|++ .|++|++.+|++++.+.+.+..... -.. ..++..=+.+..
T Consensus 5 k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~--------------~~~---~~~~~~Dl~~~~ 67 (276)
T 1wma_A 5 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE--------------GLS---PRFHQLDIDDLQ 67 (276)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT--------------TCC---CEEEECCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc--------------CCe---eEEEECCCCCHH
Confidence 4565665 68999999999999 9999999999988766654432110 001 222322233334
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=++||++...
T Consensus 68 ~~~~~~~~~~~~~g~id~li~~Ag~ 92 (276)
T 1wma_A 68 SIRALRDFLRKEYGGLDVLVNNAGI 92 (276)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred HHHHHHHHHHHhcCCCCEEEECCcc
Confidence 5556666555444344677776543
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.11 Score=48.03 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=35.0
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 8 ~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 1cyd_A 8 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAK 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56777875 899999999999999999999999887665543
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.081 Score=52.30 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=64.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+.. ... .+.+++.+ ..|+||-++.....+
T Consensus 178 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~-----~v~-~~~~~~~~---~~D~vid~~g~~~~~ 248 (348)
T 3two_A 178 TKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVK-----HFY-TDPKQCKE---ELDFIISTIPTHYDL 248 (348)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCS-----EEE-SSGGGCCS---CEEEEEECCCSCCCH
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCC-----eec-CCHHHHhc---CCCEEEECCCcHHHH
Confidence 479999999999999988888999999999999998877665532 122 44443333 489999998776444
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.. ....+.++-.++..+...
T Consensus 249 ~~----~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 249 KD----YLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp HH----HHTTEEEEEEEEECCCCC
T ss_pred HH----HHHHHhcCCEEEEECCCC
Confidence 43 345555666666665543
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.30 E-value=0.14 Score=48.03 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=52.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 81 (484)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.+
T Consensus 4 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA----------------G---GHAVAVKVDVSDRD 64 (256)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTSHH
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCHH
Confidence 466665 688999999999999999999999988766654432110 0 122222 223334
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.++.+++++.....+=+++|++..
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg 88 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAG 88 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCEEEECCC
Confidence 555666665554444477777654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.22 Score=46.91 Aligned_cols=83 Identities=8% Similarity=0.066 Sum_probs=52.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~D~~~~~~ 67 (260)
T 1nff_A 8 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----------------DA---ARYVHLDVTQPAQ 67 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----------------GG---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh-----------------cC---ceEEEecCCCHHH
Confidence 3566666 5889999999999999999999999887665543211 00 1122222233345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 68 v~~~~~~~~~~~g~iD~lv~~Ag~ 91 (260)
T 1nff_A 68 WKAAVDTAVTAFGGLHVLVNNAGI 91 (260)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556666555544444677776543
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.12 Score=47.88 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=34.8
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.|. |.+|..+++.|++.|++|.+.+|++++.+++.+
T Consensus 8 k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (244)
T 3d3w_A 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVR 49 (244)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45777775 899999999999999999999999887766544
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.17 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=33.2
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+
T Consensus 24 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 64 (277)
T 2rhc_B 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK 64 (277)
T ss_dssp EEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455565 6889999999999999999999999887665544
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.22 E-value=0.2 Score=46.85 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=34.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|-|.| .|.+|..+++.|++.|++|++.+|++++.+++.+
T Consensus 8 k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (264)
T 2pd6_A 8 ALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVR 49 (264)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 4566775 5899999999999999999999999887766554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.25 Score=45.99 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=33.5
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+|-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 13 ~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (254)
T 2wsb_A 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQ 53 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466665 5899999999999999999999999887665543
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.17 Score=49.93 Aligned_cols=97 Identities=13% Similarity=0.214 Sum_probs=55.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhC---CCcEEEE-eC-ChhHHHHHHHHhhhcCCC----------------Ceeec--CCH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK---GFPISVY-NR-TTSKVDETVERAKQEGNL----------------PLYGF--HDP 60 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~---G~~V~v~-dr-~~~~~~~~~~~~~~~~~~----------------~~~~~--~s~ 60 (484)
.||||+|.|.+|..+.+.|.++ .++|... |+ +++....+.+.....|.+ .+... .++
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 3899999999999999999886 3676644 44 444444444211100000 12222 245
Q ss_pred hHH-HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCC--EEEecCC
Q 011501 61 ESF-VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGD--CIIDGGN 105 (484)
Q Consensus 61 ~e~-~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~--iiId~st 105 (484)
+++ ...+ .+|+||.|+|.....+ .... +++.|. +|||.+.
T Consensus 81 ~~l~w~~~-~vDvV~~atg~~~s~e-~a~~---~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKDL-GVDFVIESTGVFRNRE-KAEL---HLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHHH-TCCEEEECSSSCCBHH-HHTH---HHHTTCSEEEESSCC
T ss_pred HHCccccc-CCCEEEECCccchhHH-HHHH---HHHcCCcEEEEeCCC
Confidence 444 1200 2899999998875433 2222 344565 8888765
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.12 Score=49.13 Aligned_cols=83 Identities=16% Similarity=0.190 Sum_probs=53.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+... .. ...+..=+.+...
T Consensus 6 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~~~~~ 65 (281)
T 3m1a_A 6 KVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYP-----------------DR---AEAISLDVTDGER 65 (281)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCT-----------------TT---EEEEECCTTCHHH
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc-----------------CC---ceEEEeeCCCHHH
Confidence 3455555 5899999999999999999999999887766554211 01 2222223334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~g~id~lv~~Ag~ 89 (281)
T 3m1a_A 66 IDVVAADVLARYGRVDVLVNNAGR 89 (281)
T ss_dssp HHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEECCCc
Confidence 666666665554455778777553
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.18 E-value=0.18 Score=50.27 Aligned_cols=94 Identities=11% Similarity=0.118 Sum_probs=61.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhc-CCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSI-QKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l-~~advIi~~vp~~~~ 82 (484)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+.. .....+.++.++.+ ...|+||-++.....
T Consensus 196 ~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~-----~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~ 270 (369)
T 1uuf_A 196 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGAD-----EVVNSRNADEMAAHLKSFDFILNTVAAPHN 270 (369)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCS-----EEEETTCHHHHHTTTTCEEEEEECCSSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc-----EEeccccHHHHHHhhcCCCEEEECCCCHHH
Confidence 369999999999999988888999999999999988877665432 11111212333322 347889888876544
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.. ...+.++-.++..+..
T Consensus 271 ~~~~----~~~l~~~G~iv~~G~~ 290 (369)
T 1uuf_A 271 LDDF----TTLLKRDGTMTLVGAP 290 (369)
T ss_dssp HHHH----HTTEEEEEEEEECCCC
T ss_pred HHHH----HHHhccCCEEEEeccC
Confidence 4433 3445555556665543
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=94.17 E-value=0.19 Score=47.32 Aligned_cols=84 Identities=11% Similarity=0.183 Sum_probs=53.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
++|-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++... .. .++.++. +.+.
T Consensus 10 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~~ 70 (260)
T 2ae2_A 10 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS----------------KG---FKVEASVCDLSSR 70 (260)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----------------TT---CEEEEEECCTTCH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh----------------cC---CcEEEEEcCCCCH
Confidence 3566665 58899999999999999999999998876655443211 01 2222222 2333
Q ss_pred chHHHHHHHHhhhc-CCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYM-EKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l-~~g~iiId~st~ 106 (484)
+.++.+++.+.... .+=+++|++...
T Consensus 71 ~~~~~~~~~~~~~~~g~id~lv~~Ag~ 97 (260)
T 2ae2_A 71 SERQELMNTVANHFHGKLNILVNNAGI 97 (260)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCCEEEECCCC
Confidence 44556666665544 344677776553
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.24 Score=46.63 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=33.6
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+.+.+
T Consensus 13 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 54 (263)
T 3ak4_A 13 RKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVA 54 (263)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3566665 5889999999999999999999999877665543
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.18 Score=47.41 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=33.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|-+|..+|+.|+++|++|.+.+|++++.+++.+
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 49 (263)
T 3ai3_A 8 KVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAAR 49 (263)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence 3466666 5899999999999999999999999887665543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.26 Score=45.97 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=51.9
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+++-|.| .|-+|..+++.|++.|++|++.+|++++.+++.+.. . ...+..=+.+.+.
T Consensus 6 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------------~---~~~~~~D~~~~~~ 63 (245)
T 1uls_A 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------------------G---AHPVVMDVADPAS 63 (245)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------------------T---CEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-------------------C---CEEEEecCCCHHH
Confidence 4566666 588999999999999999999999987766544311 0 1122222333345
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|++...
T Consensus 64 ~~~~~~~~~~~~g~id~lvn~Ag~ 87 (245)
T 1uls_A 64 VERGFAEALAHLGRLDGVVHYAGI 87 (245)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 556666555544444777776543
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=94.04 E-value=0.15 Score=50.32 Aligned_cols=100 Identities=11% Similarity=0.104 Sum_probs=54.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEE-eC-ChhHHHHHHHHhhhcCCC---------Ce-------eec--CCHhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVY-NR-TTSKVDETVERAKQEGNL---------PL-------YGF--HDPES 62 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~-dr-~~~~~~~~~~~~~~~~~~---------~~-------~~~--~s~~e 62 (484)
.||||+|.|++|..+.+.|.++. .+|... |+ +++....+.+....-+.+ .+ ... .++++
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~ 81 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPAN 81 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEcCChhh
Confidence 58999999999999999998875 355544 44 344333333321100000 01 111 23444
Q ss_pred HHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 63 ~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+--....+|+||.|+|.....+ ... .+++.|..+||.|...
T Consensus 82 i~w~~~~vDvVf~atg~~~s~e-~a~---~~l~~GakvVdlSa~~ 122 (330)
T 1gad_O 82 LKWDEVGVDVVAEATGLFLTDE-TAR---KHITAGAKKVVMTGPS 122 (330)
T ss_dssp GCHHHHTCSEEEECSSSCCSHH-HHT---HHHHTTCSEEEESSCC
T ss_pred CccccccCCEEEECCCccccHH-HHH---HHHHCCCEEEEECCCC
Confidence 3100012888888888875433 222 2344576677776654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.23 Score=47.26 Aligned_cols=82 Identities=15% Similarity=0.249 Sum_probs=53.6
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .|-+|..+|+.|++.|++|.+.+|+.++.+++.+... .. ...+-.=+.+.+.
T Consensus 29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------------~~---~~~~~~Dv~d~~~ 88 (272)
T 4dyv_A 29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------------DD---ALCVPTDVTDPDS 88 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------------SC---CEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------------CC---eEEEEecCCCHHH
Confidence 45555 5 5889999999999999999999999888776654321 01 2222222334445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++.+.....+=+++|++...
T Consensus 89 v~~~~~~~~~~~g~iD~lVnnAg~ 112 (272)
T 4dyv_A 89 VRALFTATVEKFGRVDVLFNNAGT 112 (272)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCCEEEECCCC
Confidence 666666665555455777776543
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.26 Score=51.31 Aligned_cols=109 Identities=23% Similarity=0.314 Sum_probs=64.3
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhHH-HHHHHHhhhcCCCCeeec--CCHhHHHhhcCCCcEEEEec--
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSKV-DETVERAKQEGNLPLYGF--HDPESFVHSIQKPRVIIMLV-- 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~~-~~~~~~~~~~~~~~~~~~--~s~~e~~~~l~~advIi~~v-- 77 (484)
++|.|||+|..|.+ +|+.|.+.|++|+++|...... +.+.+.+ +... .+.+. ++ .+|.||+.-
T Consensus 20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~g-------i~~~~g~~~~~-~~---~a~~vv~s~~i 88 (491)
T 2f00_A 20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLG-------ATIYFNHRPEN-VR---DASVVVVSSAI 88 (491)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT-------CEEESSCCGGG-GT---TCSEEEECTTC
T ss_pred CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCC-------CEEECCCCHHH-cC---CCCEEEECCCC
Confidence 57999999999997 9999999999999999866433 3333322 3332 23322 33 389888853
Q ss_pred CCCch-HHHH----------HHHHhhhcCCCC-EEEecCCCChHHHHHHHHHHHHcCC
Q 011501 78 KAGSP-VDQT----------IKTLSVYMEKGD-CIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 78 p~~~~-v~~v----------l~~l~~~l~~g~-iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
|.... +... .+.+...+.... |-|-.|+++-.++.-+...+...|.
T Consensus 89 ~~~~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 146 (491)
T 2f00_A 89 SADNPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGL 146 (491)
T ss_dssp CTTCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 32211 2111 122222232223 3455566665555556677777774
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.16 Score=47.71 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=32.9
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+|-|.| .|-+|..+|+.|++.|++|.+.+|++++.++..+
T Consensus 16 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 56 (260)
T 2zat_A 16 VALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVA 56 (260)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 455555 6889999999999999999999999887665543
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.21 Score=47.90 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=54.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
++|-|.| .|.+|..++..|++.|++|++.+|++++.+.+.+... +.. . .++.++. +.+.
T Consensus 27 k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~--------------~~~-~---~~~~~~~~Dl~~~ 88 (302)
T 1w6u_A 27 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQIS--------------SQT-G---NKVHAIQCDVRDP 88 (302)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH--------------HHH-S---SCEEEEECCTTCH
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH--------------Hhc-C---CceEEEEeCCCCH
Confidence 4576776 5899999999999999999999999887665544321 000 1 2233222 2333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=++||++...
T Consensus 89 ~~~~~~~~~~~~~~g~id~li~~Ag~ 114 (302)
T 1w6u_A 89 DMVQNTVSELIKVAGHPNIVINNAAG 114 (302)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45666666665555455788887653
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.98 E-value=0.15 Score=52.46 Aligned_cols=108 Identities=20% Similarity=0.209 Sum_probs=71.9
Q ss_pred CeEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
++|+|+|+- .=...++..|.+.|.+|.+||+.... +....... .+..+.++.+.++. +|.|
T Consensus 319 ~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~--~~~~~~~~----~~~~~~~~~~~~~~---ad~~ 389 (450)
T 3gg2_A 319 RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMK--EAQKRLGD----KVEYTTDMYDAVRG---AEAL 389 (450)
T ss_dssp CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHH--HHHHHHGG----GSEECSSHHHHTTT---CSCE
T ss_pred CEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcH--HHHHhcCc----cceecCCHHHHhcC---CCEE
Confidence 589999985 23688999999999999999987642 22222211 25667888888877 9999
Q ss_pred EEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 74 IMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
++++..++.-.--.+.+...+ ++.+|+|+-+..... .+.|+.|.+.+
T Consensus 390 vi~t~~~~f~~~~~~~~~~~~-~~~~i~D~r~~~~~~--------~~~g~~y~~ig 436 (450)
T 3gg2_A 390 FHVTEWKEFRMPDWSALSQAM-AASLVIDGRNVYELP--------ADSDFTLLNIG 436 (450)
T ss_dssp EECSCCGGGSSCCHHHHHHHS-SSCEEEESSCCCCCC------------CEEEECC
T ss_pred EEccCCHHHhhcCHHHHHHhc-CCCEEEECCCCCChH--------HhCCCEEEEec
Confidence 999987632111123444444 367999999887543 34588887654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.98 E-value=0.19 Score=47.47 Aligned_cols=85 Identities=9% Similarity=0.145 Sum_probs=53.2
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~~ 81 (484)
++-|.| .|.+|..+++.|++.|++|.+.+|++++.+++.+..... ... .++.++ =+.+.+
T Consensus 9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------------~~~---~~~~~~~~D~~~~~ 71 (267)
T 2gdz_A 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------------FEP---QKTLFIQCDVADQQ 71 (267)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------------SCG---GGEEEEECCTTSHH
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------cCC---CceEEEecCCCCHH
Confidence 566666 589999999999999999999999988766554332110 000 122222 233334
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++.+++.+.....+=+++|++...
T Consensus 72 ~v~~~~~~~~~~~g~id~lv~~Ag~ 96 (267)
T 2gdz_A 72 QLRDTFRKVVDHFGRLDILVNNAGV 96 (267)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCC
Confidence 5566666665544445778877654
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.21 Score=47.74 Aligned_cols=84 Identities=12% Similarity=0.213 Sum_probs=53.7
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCC-cEEEEecCCCchH
Q 011501 6 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKP-RVIIMLVKAGSPV 83 (484)
Q Consensus 6 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~a-dvIi~~vp~~~~v 83 (484)
+-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.++... .-.. . ..+-.=+.+.+.+
T Consensus 36 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~~Dv~d~~~v 98 (281)
T 4dry_A 36 ALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGG--------------RTGN---IVRAVVCDVGDPDQV 98 (281)
T ss_dssp EEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HHSS---CEEEEECCTTCHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh--------------cCCC---eEEEEEcCCCCHHHH
Confidence 44445 58899999999999999999999999887766543211 0010 1 1222223344456
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+++++.....+=+++|++...
T Consensus 99 ~~~~~~~~~~~g~iD~lvnnAG~ 121 (281)
T 4dry_A 99 AALFAAVRAEFARLDLLVNNAGS 121 (281)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCC
Confidence 66666666655555788877654
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.21 Score=47.08 Aligned_cols=86 Identities=12% Similarity=0.204 Sum_probs=53.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+.... .... .++.++. +.+.
T Consensus 14 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------------~~~~---~~~~~~~~D~~~~ 76 (267)
T 1iy8_A 14 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLE--------------TAPD---AEVLTTVADVSDE 76 (267)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH--------------HCTT---CCEEEEECCTTSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--------------hcCC---ceEEEEEccCCCH
Confidence 3455665 68899999999999999999999998876665443211 0001 2233222 2333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++++.....+=+++|++...
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAg~ 102 (267)
T 1iy8_A 77 AQVEAYVTATTERFGRIDGFFNNAGI 102 (267)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 44556666655544444777776543
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.25 Score=51.14 Aligned_cols=111 Identities=17% Similarity=0.233 Sum_probs=64.1
Q ss_pred CeEEEEcccHHHHH-HHHHHHhCCCcEEEEeCChhHH-HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEKGFPISVYNRTTSKV-DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~G~~V~v~dr~~~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
++|.|||+|..|.+ +|+.|.+.|++|+++|...... +.+.+.+. .+..-.+.+ .++ .+|.||.. +|.
T Consensus 19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi-----~~~~g~~~~-~~~---~a~~vv~s~~i~~ 89 (475)
T 1p3d_A 19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA-----KIYIGHAEE-HIE---GASVVVVSSAIKD 89 (475)
T ss_dssp CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC-----EEEESCCGG-GGT---TCSEEEECTTSCT
T ss_pred CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCC-----EEECCCCHH-HcC---CCCEEEECCCCCC
Confidence 57999999999997 9999999999999999876433 33333221 121112333 233 38988885 232
Q ss_pred Cch-HHHH----------HHHHhhhcCCC-CEEEecCCCChHHHHHHHHHHHHcCC
Q 011501 80 GSP-VDQT----------IKTLSVYMEKG-DCIIDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 80 ~~~-v~~v----------l~~l~~~l~~g-~iiId~st~~~~~~~~~~~~l~~~g~ 123 (484)
... +... .+.+...+... -|-|-.|+++-.++.-+...+...|.
T Consensus 90 ~~~~~~~a~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~ 145 (475)
T 1p3d_A 90 DNPELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAKL 145 (475)
T ss_dssp TCHHHHHHHHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 211 2111 11222222222 34455666665555556777777774
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.96 E-value=0.077 Score=52.24 Aligned_cols=43 Identities=9% Similarity=0.186 Sum_probs=37.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|.+|++.++++++.+.+.+.+
T Consensus 168 ~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lG 210 (340)
T 3s2e_A 168 QWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLG 210 (340)
T ss_dssp SEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC
Confidence 3689999999999999988889999999999999887766544
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.18 Score=47.54 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=53.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+|++++.+++.+..... . .++.++ =+.+.
T Consensus 8 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~---~~~~~~~~D~~~~ 68 (262)
T 1zem_A 8 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 68 (262)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc----------------C---CcEEEEEecCCCH
Confidence 3566665 588999999999999999999999988776654432110 0 222222 22333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+++|++...
T Consensus 69 ~~~~~~~~~~~~~~g~id~lv~nAg~ 94 (262)
T 1zem_A 69 EAVIGTVDSVVRDFGKIDFLFNNAGY 94 (262)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 45556666665544444777776543
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.066 Score=54.42 Aligned_cols=115 Identities=10% Similarity=0.155 Sum_probs=71.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE-EEeC----------ChhHHHHHHHHhhh--cCCC-Ce---eecCCHhHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS-VYNR----------TTSKVDETVERAKQ--EGNL-PL---YGFHDPESFVHS 66 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~-v~dr----------~~~~~~~~~~~~~~--~~~~-~~---~~~~s~~e~~~~ 66 (484)
++|.|.|.|+||...+..|.+.|.+|. +.|. +.+.+.++.+.... -.++ .. ....+.+++...
T Consensus 211 k~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~~~~~~~ 290 (421)
T 1v9l_A 211 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKL 290 (421)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCchhhhcC
Confidence 589999999999999999999999877 6676 45555443322110 0000 00 111134555442
Q ss_pred cCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 67 IQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 67 l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.||+++-|-.... +. ..-.+.+ .=++|+...|... |.+..+.+.++|+.|+.
T Consensus 291 --~~Dil~P~A~~~~-I~---~~~a~~l-~ak~V~EgAN~p~--t~~a~~~l~~~Gi~~~P 342 (421)
T 1v9l_A 291 --DVDIFVPAAIENV-IR---GDNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVP 342 (421)
T ss_dssp --CCSEEEECSCSSC-BC---TTTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEEC
T ss_pred --CccEEEecCcCCc-cc---hhhHHHc-CceEEEecCCCcC--CHHHHHHHHHCCCEEeC
Confidence 4899988764442 21 1122334 3478888888763 45666788999998874
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.21 Score=46.36 Aligned_cols=41 Identities=15% Similarity=0.208 Sum_probs=34.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
+++-|.| .|.+|..++..|++.|++|.+.+|++++.+++.+
T Consensus 3 k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 44 (250)
T 2cfc_A 3 RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETAR 44 (250)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4566776 5899999999999999999999999887766544
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.2 Score=46.68 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=52.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC-ChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR-TTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr-~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
+++-|.| .|-+|..+|+.|++.|++|.+.+| ++++.+++.++... .. .++.++. +.+
T Consensus 5 k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------------~~---~~~~~~~~D~~~ 65 (246)
T 2uvd_A 5 KVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKK----------------LG---SDAIAVRADVAN 65 (246)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----------------TT---CCEEEEECCTTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHh----------------cC---CcEEEEEcCCCC
Confidence 4455555 688999999999999999999999 77766655432211 01 2232222 233
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.++.+++++.....+=+++|++...
T Consensus 66 ~~~~~~~~~~~~~~~g~id~lv~nAg~ 92 (246)
T 2uvd_A 66 AEDVTNMVKQTVDVFGQVDILVNNAGV 92 (246)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 345666666665544445777776554
|
| >1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.24 Score=45.90 Aligned_cols=95 Identities=16% Similarity=0.219 Sum_probs=59.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE-EecCCC
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII-MLVKAG 80 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi-~~vp~~ 80 (484)
||.+|+|+ |.||+.++......|+++. .+|++.+ . ++ +. +|++| ++.|.
T Consensus 13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~----------~----------~l----~~---~DVvIDFT~P~- 64 (228)
T 1vm6_A 13 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV----------E----------EL----DS---PDVVIDFSSPE- 64 (228)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE----------E----------EC----SC---CSEEEECSCGG-
T ss_pred ceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc----------c----------cc----cC---CCEEEECCCHH-
Confidence 68999997 9999999887767788754 5676531 0 11 13 89888 66655
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
.+.+.++... ..|.-+|.++|.....-.+..+.+.++ +..+-+|-+
T Consensus 65 -a~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vv~apNf 110 (228)
T 1vm6_A 65 -ALPKTVDLCK---KYRAGLVLGTTALKEEHLQMLRELSKE-VPVVQAYNF 110 (228)
T ss_dssp -GHHHHHHHHH---HHTCEEEECCCSCCHHHHHHHHHHTTT-SEEEECSCC
T ss_pred -HHHHHHHHHH---HcCCCEEEeCCCCCHHHHHHHHHHHhh-CCEEEeccc
Confidence 4555444433 346677777777655444444444444 556656643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 484 | ||||
| d2pgda1 | 297 | a.100.1.1 (A:177-473) 6-phosphogluconate dehydroge | 1e-132 | |
| d1pgja1 | 300 | a.100.1.1 (A:179-478) 6-phosphogluconate dehydroge | 1e-119 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 1e-32 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 5e-32 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 5e-22 | |
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 1e-20 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 1e-16 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 6e-11 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 1e-06 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 7e-05 | |
| d1bg6a2 | 184 | c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin | 0.001 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 297 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 381 bits (979), Expect = e-132
Identities = 147/297 (49%), Positives = 196/297 (65%), Gaps = 6/297 (2%)
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITA 239
G+G+FVKM+HNGIEYGDMQLI EAY ++K V L ++E+ + F EWNK EL SFLIEITA
Sbjct: 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITA 60
Query: 240 DIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEE 299
I +D G +L+ K+ D G KGTGKWT A + V I ++ AR LS LK+E
Sbjct: 61 SILKFQDADGK-HLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDE 119
Query: 300 RVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWD 359
R++A+K + G DKK ++D+R+ALYASKI SYAQG L+R + E GW
Sbjct: 120 RIQASKKLK----GPQNIPFEGDKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWT 175
Query: 360 LKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419
L G + +W+GGCIIR++FL +IK A+DRNP L N+L+D F + Q +WRR +
Sbjct: 176 LNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 235
Query: 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEW 475
+ +GI P +++L+++D YR LPANL+QAQRDYFGAHTYE + G F HT W
Sbjct: 236 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNW 292
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} Length = 300 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Score = 350 bits (898), Expect = e-119
Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 8/303 (2%)
Query: 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEW-NKGELLSFLIEIT 238
G+G+ VKM HN EY +Q+ E +D+L+++G L+N+E+ V +W +K L S++++I+
Sbjct: 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDIS 59
Query: 239 ADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKE 298
KD G YL + V+D+ G KGTG W+ Q+A ++ V AP++ ++ +R + K
Sbjct: 60 IAAARAKDKDGS-YLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKT 118
Query: 299 ERVEAAKVFRSSGIGDVLAEQTVD-KKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKG 357
ER A + I + ++ + I YAQ +R
Sbjct: 119 ERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHN 178
Query: 358 WDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVV 417
+ L L ++ GCI++ L + +A+++NP+++N++ F EI +R +V
Sbjct: 179 FGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLM--CAFQTEIRAGLQNYRDMV 236
Query: 418 CL-AINSGISTPGMSSSLAYFDTYRRERLP-ANLVQAQRDYFGAHTYERVDMSGSFHTEW 475
L +S P +S+SL Y L LV QRD FG H YERVD G +W
Sbjct: 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQW 296
Query: 476 FKI 478
++
Sbjct: 297 PEL 299
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 120 bits (301), Expect = 1e-32
Identities = 80/176 (45%), Positives = 111/176 (63%), Gaps = 1/176 (0%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER-AKQEGNLPLYGFHDPESF 63
+G+ GL VMG NLALNIAEKGF ++V+NRT SK +E ++ A L F E+F
Sbjct: 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAF 62
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
S++KPR ++LV+AG+ D TI+ L EKGD ++D GN +++ RR + + GL
Sbjct: 63 AASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGL 122
Query: 124 LYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGKG 179
+LGMG+SGGEEGAR GP+ PGG+ ++ I I+ AA+ D PCVT G G
Sbjct: 123 RFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 118 bits (296), Expect = 5e-32
Identities = 87/175 (49%), Positives = 115/175 (65%), Gaps = 2/175 (1%)
Query: 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPES 62
Q I L GLAVMGQNL LN+ + GF + +NRT SKVD+ + A + + G H E
Sbjct: 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEE 59
Query: 63 FVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELG 122
V ++KPR II+LVKAG VD I+ L ++ GD IIDGGN Y +T RR + + + G
Sbjct: 60 MVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG 119
Query: 123 LLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVG 177
+L++G GVSGGE+GARYGPSLMPGG+ EA+ HI+ I +AA+V PC +VG
Sbjct: 120 ILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVG 174
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 90.3 bits (223), Expect = 5e-22
Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 8/164 (4%)
Query: 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESF 63
+I GL MG +A N+ + G+ ++V++ S VD
Sbjct: 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVD-------GLVAAGASAARSARDA 54
Query: 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGL 123
V ++ + + L ++ G +++ + + A E GL
Sbjct: 55 VQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114
Query: 124 LYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQV 166
L VSGG GA G + M GG EA + + + +
Sbjct: 115 AMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNI 158
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 86.4 bits (213), Expect = 1e-20
Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 14/166 (8%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++G GL +MG+ ++ N+ + G+ + V +R + + + G +
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------AGAETASTAK 51
Query: 65 HSIQKPRVIIMLVKAGSPVDQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL 121
++ VII ++ V + + + G +ID + + A+
Sbjct: 52 AIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK 111
Query: 122 GLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQV 166
G+ L VSGGE A G S+M GG + D++ +A V
Sbjct: 112 GVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSV 157
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 74.9 bits (183), Expect = 1e-16
Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 14/168 (8%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
++ GL MG +A ++A + FP V+NRT K E +
Sbjct: 2 KVAFIGLGAMGYPMAGHLA-RRFPTLVWNRTFEKALRHQEEFGS-----------EAVPL 49
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ + RVI + V + + L Y+ +G +D + E + R + + E G+
Sbjct: 50 ERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVT 109
Query: 125 YLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAAQVPDSGP 171
YL VSGG GA G ++M GG EA + + L A +V GP
Sbjct: 110 YLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPF-LAYAKKVVHVGP 156
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 58.3 bits (140), Expect = 6e-11
Identities = 21/174 (12%), Positives = 42/174 (24%), Gaps = 25/174 (14%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
R+G G + Q LA + +G + S R
Sbjct: 2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETS----------E 51
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+ V+I V G + + +D N E + + G
Sbjct: 52 EDVYSCPVVISAVTPGVALGAARRAG---RHVRGIYVDINNISPETVRMASSLIEKGG-- 106
Query: 125 YLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQVPDSGPCVTYVGK 178
++ + G ++ G ++ G + G+
Sbjct: 107 FVDAAIMGSVRRKGADIRIIASGRDAEE----------FMKLNRYGLNIEVRGR 150
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 45.9 bits (107), Expect = 1e-06
Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 17/170 (10%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFV 64
+IG+ GL ++G +LA ++ +G + +R S ++ VE + +
Sbjct: 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE---------RQLVDEAGQDL 52
Query: 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124
+Q ++I + + K + + Q +G
Sbjct: 53 SLLQTAKIIFLCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGH 112
Query: 125 YLGMGVSGGEEGARYGP--------SLMPGGSFEAYKHIEDILLKVAAQV 166
+ + G +GA + E + +L + ++
Sbjct: 113 PMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKI 162
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 41.1 bits (95), Expect = 7e-05
Identities = 7/162 (4%), Positives = 33/162 (20%), Gaps = 18/162 (11%)
Query: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVH 65
+ G + + + ++ + +R+ + E +
Sbjct: 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61
Query: 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLY 125
+ + + + G + + ++
Sbjct: 62 IVPDRYIKTVA------------NHLNLGDAVLVHCSGFLSSEIFKKSGRASIH-----P 104
Query: 126 LGMGVSGGEEGARY-GPSLMPGGSFEAYKHIEDILLKVAAQV 166
S + G ++ I +++ +
Sbjct: 105 NFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKY 146
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Score = 37.6 bits (86), Expect = 0.001
Identities = 17/102 (16%), Positives = 36/102 (35%), Gaps = 6/102 (5%)
Query: 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----QEGNLPLYGFHD 59
+ GL G A +A KG + ++ ++ E +R +
Sbjct: 3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLL 62
Query: 60 PESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCII 101
+++ VI+++V A ++ Y+ +G II
Sbjct: 63 TSDIGLAVKDADVILIVVPAIH-HASIAANIASYISEGQLII 103
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 484 | |||
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 100.0 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 100.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.97 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.97 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.97 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.94 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 99.88 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 99.88 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.85 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.82 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.75 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.74 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.7 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.61 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.58 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.54 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.51 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.49 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.48 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.43 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.41 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.4 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.39 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.37 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.32 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 99.26 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 99.08 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.92 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.89 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.86 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.82 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.79 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.78 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 98.73 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 98.71 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.64 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.63 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.62 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.61 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.55 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 98.51 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.45 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 98.41 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.33 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 98.33 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.33 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.22 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 98.21 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 98.14 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 98.1 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.08 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.05 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.04 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.03 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 98.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.99 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 97.99 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.96 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.94 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.92 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.91 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.9 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.84 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.84 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.77 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.76 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.74 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 97.73 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.73 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.71 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.68 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.67 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 97.65 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.59 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.59 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.56 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 97.54 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.54 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 97.53 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 97.49 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 97.47 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 97.41 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 97.41 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.38 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 97.32 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.32 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 97.3 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.27 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 97.27 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 97.24 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.22 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.19 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.17 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 97.14 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.13 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 97.13 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 97.08 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 97.07 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 97.02 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.01 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.0 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.96 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.93 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.9 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.89 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 96.84 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.82 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.78 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.69 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.67 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.67 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.64 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.61 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.6 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.56 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.55 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.52 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.47 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.47 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.42 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.38 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.37 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.36 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.32 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.31 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 96.2 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 96.07 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 96.05 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.91 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 95.87 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 95.84 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 95.83 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 95.81 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.76 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 95.76 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 95.69 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.64 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.64 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.63 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 95.6 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 95.57 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 95.57 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.55 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.54 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 95.54 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.47 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 95.43 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.43 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 95.42 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 95.39 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 95.39 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 95.38 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.36 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 95.36 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 95.34 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 95.31 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 95.25 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 95.22 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.22 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 95.21 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.16 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.15 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 95.15 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 95.14 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 95.13 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 95.13 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 95.08 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 95.07 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 95.06 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 95.05 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.92 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.91 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 94.89 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.86 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 94.86 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.84 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 94.84 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 94.8 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.8 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 94.79 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 94.77 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.77 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 94.76 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.75 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 94.64 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 94.63 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 94.62 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.61 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 94.6 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.58 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 94.51 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 94.47 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 94.44 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 94.41 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 94.39 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 94.39 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 94.38 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 94.36 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.31 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 94.3 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.23 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 94.22 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 94.11 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.07 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.03 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 94.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 93.95 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 93.93 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 93.93 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 93.92 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 93.92 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 93.87 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 93.86 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 93.85 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 93.85 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 93.79 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 93.75 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 93.73 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 93.73 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.71 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.51 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 93.5 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.48 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 93.48 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 93.45 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.36 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 93.33 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 93.32 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 93.32 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 93.16 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 93.09 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 92.97 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.94 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 92.89 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 92.89 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 92.81 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 92.71 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 92.67 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.65 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 92.65 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.52 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 92.39 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.38 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 92.35 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 92.32 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 92.32 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.14 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 92.1 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 91.8 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.79 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 91.73 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 91.73 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 91.54 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 91.48 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 91.44 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 91.3 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 91.21 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 90.93 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 90.91 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 90.77 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 90.66 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 90.59 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 90.59 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 90.53 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.37 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 90.26 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 90.1 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 90.01 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 89.84 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 89.75 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 89.74 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 89.69 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 89.59 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 89.42 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 89.23 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 89.08 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 88.91 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 88.91 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 88.83 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 88.27 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 87.59 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 87.48 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 87.35 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 87.31 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 87.29 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 87.12 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 87.02 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 86.98 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 86.86 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 86.77 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 86.65 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 86.56 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 86.5 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 86.34 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 86.27 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.94 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 85.92 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 85.73 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 85.72 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 85.28 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 85.06 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 84.71 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 84.52 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 84.49 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 84.42 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.39 | |
| d1ks9a1 | 124 | Ketopantoate reductase PanE {Escherichia coli [Tax | 84.07 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.04 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 84.0 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 83.85 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 83.58 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 83.43 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 83.41 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 83.37 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 83.29 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.15 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 83.13 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 83.1 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 82.83 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 82.64 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 82.4 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 81.86 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 81.79 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 81.55 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 81.41 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 81.37 | |
| d1vmea1 | 148 | ROO-like flavoprotein TM0755, C-terminal domain {T | 80.69 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 80.67 | |
| d2g82a1 | 168 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 80.59 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.58 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 80.41 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 80.26 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 80.15 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 80.08 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 80.04 |
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=100.00 E-value=7.2e-80 Score=599.63 Aligned_cols=295 Identities=49% Similarity=0.858 Sum_probs=279.5
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 259 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~ 259 (484)
|+|||||||||+|||++||+++|++.++++..|++++++.++|+.|+.+.++||+++++..+++.++. ...+.+|.|.|
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~-~~~~~ld~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDA-DGKHLLPKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCT-TSSBSGGGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCC-CcCcchhhhhc
Confidence 79999999999999999999999999999864499999999999999999999999999999987653 34578999999
Q ss_pred hcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCcccccccchhhHHHHHHHHHHHHHH
Q 011501 260 KTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLAEQTVDKKKLIDDVRQALYASKI 339 (484)
Q Consensus 260 ~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~nai~~~~~ 339 (484)
.++|||||+|++++|.++|||+|+|.+||++|++|+.+++|.++++.++.+... ....+...|+++||||++|++|
T Consensus 80 ~a~~kGTG~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~~~~~~~~~~~~~----~~~~~~~~~i~~l~~al~~~~i 155 (297)
T d2pgda1 80 SAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSSLKDERIQASKKLKGPQNI----PFEGDKKSFLEDIRKALYASKI 155 (297)
T ss_dssp CCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC----CCCSCHHHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHHHhhhcccCcccC----CCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876542 3345778899999999999999
Q ss_pred HHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhhhHHHHHHH
Q 011501 340 CSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVVCL 419 (484)
Q Consensus 340 ~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v~~ 419 (484)
++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.+.++|++++++.|+++++.|.+.+++..+.|||+|..
T Consensus 156 ~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a~~~~~~l~nl~~~~~~~~~l~~~~~~~r~~v~~ 235 (297)
T d2pgda1 156 ISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFKSAVENCQDSWRRAIST 235 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHHHHhCCCccchhhcHHHHHHHhhccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChHHHHHHHHHHHhhcCCCcchhHHHHHhhccCCccceeccCCCcc-ccccccCC
Q 011501 420 AINSGISTPGMSSSLAYFDTYRRERLPANLVQAQRDYFGAHTYERVDMSGSF-HTEWFKIA 479 (484)
Q Consensus 420 a~~~g~p~p~~~~al~~~~~~~~~~~~~~~i~a~rd~fG~h~~~r~d~~~~~-h~~w~~~~ 479 (484)
|++.|+|+|++++||+||++++++++|+|||||||||||+|||+|+|+||.| |++|++++
T Consensus 236 ai~~gip~P~lssaL~y~~~~~~~~lp~~lIQAqRD~FG~H~~~r~d~~G~f~H~~W~~~~ 296 (297)
T d2pgda1 236 GVQAGIPMPCFTTALSFYDGYRHAMLPANLIQAQRDYFGAHTYELLAKPGQFIHTNWTGHG 296 (297)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHCSSCTHHHHHHHHHHHHCCCBCCSSSTTCCBCCCCSCSC
T ss_pred HHHcCCChHHHHHHHHHHHHhccCCchhHHHHHHHHHhcCCCeeecCCCCCcccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999985 99999754
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=3.5e-77 Score=582.92 Aligned_cols=294 Identities=30% Similarity=0.534 Sum_probs=265.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhcc-CcchhhhhhhhccccccccCCCCchhHHHhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNK-GELLSFLIEITADIFGIKDDKGDGYLVDKVL 258 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~-g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~ 258 (484)
|+|||||||||+|||++||+++|++.+++..+ ++++++.++|+.|+. +.++|||++++.++++.+|+ .+.+++|.|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~-~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~-~g~~l~d~I~ 78 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMG-LNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDK-DGSYLTEHVM 78 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCT-TSSBGGGGBC
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCC-CCchhHHHhc
Confidence 79999999999999999999999999999877 999999999999965 56899999999999987664 4568999999
Q ss_pred hhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCCCCCCccc-ccccchhhHHHHHHHHHHHH
Q 011501 259 DKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSSGIGDVLA-EQTVDKKKLIDDVRQALYAS 337 (484)
Q Consensus 259 ~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~v~nai~~~ 337 (484)
|.++|||||+|++++|.++|+|+|++.+||++|++|+.+++|..+++.++++.+..... ......++|+++||||++||
T Consensus 79 d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~ 158 (300)
T d1pgja1 79 DRIGSKGTGLWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIA 158 (300)
T ss_dssp CCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHH
T ss_pred ccccCCchHHHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998654311000 11235789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchhHHHHHHhhhhhHHHHH
Q 011501 338 KICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPEFAKEIIERQSAWRRVV 417 (484)
Q Consensus 338 ~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~v 417 (484)
+|++|+|||+||++++++|+|++|+.+|+++||+||||||+||+.|.++|+++|++.+++. .|...+.+....|+++|
T Consensus 159 ~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~a~~~~~~l~~l~~--~f~~~~~~~~~~~~r~v 236 (300)
T d1pgja1 159 IISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTEAFEKNPNISNLMC--AFQTEIRAGLQNYRDMV 236 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHHHHHHCTTCSCTTG--GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHHHhhcCCccchhhH--HHHHHHHHhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888774 36666666766665555
Q ss_pred -HHHHHcCCChHHHHHHHHHHHhhcCCCcc-hhHHHHHhhccCCccceeccCCCcccccccc
Q 011501 418 -CLAINSGISTPGMSSSLAYFDTYRRERLP-ANLVQAQRDYFGAHTYERVDMSGSFHTEWFK 477 (484)
Q Consensus 418 -~~a~~~g~p~p~~~~al~~~~~~~~~~~~-~~~i~a~rd~fG~h~~~r~d~~~~~h~~w~~ 477 (484)
..+++.|+|+|++++||+||++++++++| +|||||||||||+|||+|+|++|.||++|++
T Consensus 237 ~~~~~~~gip~P~lssaL~y~~~~~~~~l~~anLIQAqRD~FGaH~~~r~d~~g~~H~~W~~ 298 (300)
T d1pgja1 237 ALITSKLEVSIPVLSASLNYVTAMFTPTLKYGQLVSLQRDVFGRHGYERVDKDGRESFQWPE 298 (300)
T ss_dssp HHHHHHCCCCCHHHHHHHHHHHHHTCSCCTHHHHHHHHHHHHHCCCEEBSSSSSEECCCCCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhccCCchhHHHHHHHhhcCCCCeeeCCCCCCcCCCCCC
Confidence 56788999999999999999999999999 6999999999999999999999999999986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.97 E-value=7.4e-32 Score=244.95 Aligned_cols=174 Identities=49% Similarity=0.841 Sum_probs=159.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+.+|||||+|.||.+||++|+++||+|++|||++++++++.+.+... .......+.+++.+.+..+|.+++++|++.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~ 79 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKG--TKVLGAHSLEEMVSKLKKPRRIILLVKAGQA 79 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTT--SSCEECSSHHHHHHHBCSSCEEEECSCTTHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccc--ccccchhhhhhhhhhhcccceEEEecCchHH
Confidence 35899999999999999999999999999999999999998765432 1234566777777777779999999999999
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
+.++.+++.+.+++|++|||+||..|.++.++.+.+.++|+.|+++|++|++..++.|.++|+||+++++++++|+|+.+
T Consensus 80 v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~~~~~gG~~~~~~~~~~il~~~ 159 (176)
T d2pgda2 80 VDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGI 159 (176)
T ss_dssp HHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCCEEEEEECTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCcEEEcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCceEEeCC
Q 011501 163 AAQVPDSGPCVTYVGK 178 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~ 178 (484)
+.++..++||+.|+|+
T Consensus 160 ~~kv~~g~~c~~~~G~ 175 (176)
T d2pgda2 160 AAKVGTGEPCCDWVGD 175 (176)
T ss_dssp SCBCTTSCBSCCCCEE
T ss_pred hcccCCCCcCceeeCC
Confidence 9999889999999986
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.9e-31 Score=238.75 Aligned_cols=157 Identities=22% Similarity=0.345 Sum_probs=147.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+ ...+.+++|+++. +|+||+|||++.++
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~d~ii~~v~~~~~v 70 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAG-------AETASTAKAIAEQ---CDVIITMLPNSPHV 70 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEECSSHHHHHHH---CSEEEECCSSHHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhh-------hhhcccHHHHHhC---CCeEEEEcCCHHHH
Confidence 5899999999999999999999999999999999999988754 4678899999998 99999999999999
Q ss_pred HHHH---HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHH
Q 011501 84 DQTI---KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl---~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll 159 (484)
++++ +.+.+.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..++.|+ ++|+||+++++++++++|
T Consensus 71 ~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il 150 (161)
T d1vpda2 71 KEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLM 150 (161)
T ss_dssp HHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHH
Confidence 9988 568888999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred HHHhccCCCCCCceEEeC
Q 011501 160 LKVAAQVPDSGPCVTYVG 177 (484)
Q Consensus 160 ~~i~~~~~~~~~~~~~~G 177 (484)
+.++.+ ++|+|
T Consensus 151 ~~~~~~-------i~~~G 161 (161)
T d1vpda2 151 KAMAGS-------VVHTG 161 (161)
T ss_dssp HTTEEE-------EEEEE
T ss_pred HHhcCc-------eEECC
Confidence 999976 48886
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.97 E-value=2.8e-30 Score=231.22 Aligned_cols=158 Identities=24% Similarity=0.360 Sum_probs=145.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+||||||+|.||.+||++|+++||+|.+|||++++.+.+.+.+ ...+.++.+++.. +|+|++|||++.+
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~e~~~~---~diii~~v~~~~~ 70 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG-------ASAARSARDAVQG---ADVVISMLPASQH 70 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT-------CEECSSHHHHHTS---CSEEEECCSCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh-------ccccchhhhhccc---cCeeeecccchhh
Confidence 46899999999999999999999999999999999998887654 4667899999988 9999999999988
Q ss_pred HHHHHH---HHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHH
Q 011501 83 VDQTIK---TLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~---~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~l 158 (484)
++.++. ++.+.+.+|++|||+||+.|.++.++.+.+.++|++|+++||+||+.+++.|+ ++|+||+++++++++++
T Consensus 71 ~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~i 150 (162)
T d3cuma2 71 VEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPL 150 (162)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHH
Confidence 888874 47788999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHhccCCCCCCceEEeC
Q 011501 159 LLKVAAQVPDSGPCVTYVG 177 (484)
Q Consensus 159 l~~i~~~~~~~~~~~~~~G 177 (484)
|+.++.+ ++|+|
T Consensus 151 l~~~~~~-------v~~~G 162 (162)
T d3cuma2 151 FEAMGRN-------IFHAG 162 (162)
T ss_dssp HHHHEEE-------EEEEE
T ss_pred HHHHcCc-------cEECc
Confidence 9999977 48886
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.95 E-value=2e-28 Score=222.44 Aligned_cols=176 Identities=44% Similarity=0.751 Sum_probs=155.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC-CCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN-LPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|||||||+|.||.+||++|+++||+|++|||++++.+++.+.+..... .......+.++++..+..++.+++++++...
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 589999999999999999999999999999999999999887643210 0245566778888877789999999999989
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i 162 (484)
++.++..+...+.++++++|+||..|.++.++.+.+.++++.|+++|++|++.+++.|+++|+||+++++++++|+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~~~mvgG~~~~~~~v~pil~~~ 161 (178)
T d1pgja2 82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGPAFFPGGTLSVWEEIRPIVEAA 161 (178)
T ss_dssp HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCCEEEEEECHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCcEEEeeCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred hccCCCCCCceEEeCCchhH
Q 011501 163 AAQVPDSGPCVTYVGKGGSG 182 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~~g~g 182 (484)
+.++.++.+ |+|+.|+|
T Consensus 162 ~~~~~~~~~---~~g~~G~G 178 (178)
T d1pgja2 162 AAKADDGRP---CVTMNGSG 178 (178)
T ss_dssp SCBCTTSCB---SCCCCCST
T ss_pred hccccCCCC---ccCCCCCC
Confidence 988633333 67877765
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=4.3e-27 Score=208.96 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=136.8
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
||||||+|.||.+||++|.++|+.| +|||++++..++.+.+. ...... +.+.. +|++|+++|++.++.
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~---~~~~i~~~~~~~~v~ 69 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFG-------SEAVPL-ERVAE---ARVIFTCLPTTREVY 69 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHC-------CEECCG-GGGGG---CSEEEECCSSHHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcC-------Cccccc-ccccc---eeEEEecccchhhhh
Confidence 7999999999999999999999865 78999888887776543 123333 44444 899999999999999
Q ss_pred HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHHh
Q 011501 85 QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 85 ~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
.+.+++.+.+.+++++||+||..|..++++.+.+.++|++|+|+||+||+.+|+.|+ ++|+||+++++++++|+| .++
T Consensus 70 ~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~ 148 (156)
T d2cvza2 70 EVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYA 148 (156)
T ss_dssp HHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTE
T ss_pred hhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-Hhc
Confidence 988999999999999999999999999999999999999999999999999999999 999999999999999999 488
Q ss_pred ccCCCCCCceEEeCC
Q 011501 164 AQVPDSGPCVTYVGK 178 (484)
Q Consensus 164 ~~~~~~~~~~~~~G~ 178 (484)
.+ ++|+||
T Consensus 149 ~~-------v~~~GP 156 (156)
T d2cvza2 149 KK-------VVHVGP 156 (156)
T ss_dssp EE-------EEEEES
T ss_pred Cc-------CEEeCc
Confidence 76 599986
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.88 E-value=3.4e-24 Score=206.82 Aligned_cols=119 Identities=7% Similarity=0.091 Sum_probs=99.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccchh
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDPE 401 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~~ 401 (484)
|+||||||||||||||+||+|+|+|++|+.+-..++ .++.++++.|++| .++||||++..+++++++...+.++|.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~--~~i~~vf~~w~~~-~l~syLleit~~il~~kd~~~~~~ld~I 77 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGH--KEMAKAFEEWNKT-ELDSFLIEITASILKFQDADGKHLLPKI 77 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCH--HHHHHHHHHHTTT-TTCBHHHHHHHHHHHCBCTTSSBSGGGS
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCH--HHHHHHHHHHhCC-CccHHHHHHHHHHHhccCCCcCcchhhh
Confidence 689999999999999999999999999997532222 4556666669999 8999999999999976554456778888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 402 FAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 402 ~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
.+...++++| +|++++|+++|+|+|+|++||+ ++++.+.+|.
T Consensus 78 ~d~a~~kGTG--~Wt~~~Al~lgvp~p~I~~Av~aR~~S~~k~~R~ 121 (297)
T d2pgda1 78 RDSAGQKGTG--KWTAISALEYGVPVTLIGEAVFARCLSSLKDERI 121 (297)
T ss_dssp CCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHCHHHHH
T ss_pred hccccCCCch--HHHHHHHHHcCCCchHHHHHHhhHhhcccHHHHH
Confidence 8888888888 9999999999999999999997 6676665554
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.88 E-value=5.3e-24 Score=206.17 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=100.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCC-CHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDL-KLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l-~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
|+||||||||||||||+||+++|+|++||.. +++. ++.+|++.|++|.+++||||++..++++++++....++|.
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~----~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~ 76 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAM----GLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEH 76 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHc----CCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHH
Confidence 6899999999999999999999999999853 3222 4677777797766999999999999998765545688888
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHH--HHHhhcCCCc
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLA--YFDTYRRERL 445 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~--~~~~~~~~~~ 445 (484)
+.+.+.++++| +|++++|+++|+|+|+|++||. ++++++.+|.
T Consensus 77 I~d~a~~kGTG--~Wt~~~al~~gvp~p~i~~Av~aR~~S~~k~~R~ 121 (300)
T d1pgja1 77 VMDRIGSKGTG--LWSAQEALEIGVPAPSLNMAVVSRQFTMYKTERQ 121 (300)
T ss_dssp BCCCCCCCSHH--HHHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHH
T ss_pred hcccccCCchH--HHHHHHHHHcCCCccHHHHHHHHHHHhCChHHHH
Confidence 88888889888 9999999999999999999997 6777776654
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.85 E-value=1.1e-21 Score=172.94 Aligned_cols=149 Identities=16% Similarity=0.142 Sum_probs=121.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||||||+|.||.+||++|+++||+|++||+++++...+...+. ....+++|+++. +|+||+|||++ +.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~~e~~~~---~diIi~~v~~~-~~ 69 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-------GVTETSEEDVYS---CPVVISAVTPG-VA 69 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-------TCEECCHHHHHT---SSEEEECSCGG-GH
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc-------cccccHHHHHhh---cCeEEEEecCc-hH
Confidence 58999999999999999999999999999999887777666543 346788999988 99999999987 55
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKV 162 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i 162 (484)
.+++..+.+.+ ++++||+||..|..++++.+.+++. .|+++|++|++..+..+. .++.|++.+.++. |+.+
T Consensus 70 ~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~ 141 (152)
T d1i36a2 70 LGAARRAGRHV--RGIYVDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRY 141 (152)
T ss_dssp HHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGG
T ss_pred HHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHc
Confidence 66676776654 6899999999999999988877544 599999999999998888 5555666555543 6777
Q ss_pred hccCCCCCCceEEeCC
Q 011501 163 AAQVPDSGPCVTYVGK 178 (484)
Q Consensus 163 ~~~~~~~~~~~~~~G~ 178 (484)
+.+ +.++|+
T Consensus 142 g~~-------i~~~G~ 150 (152)
T d1i36a2 142 GLN-------IEVRGR 150 (152)
T ss_dssp TCE-------EEECSS
T ss_pred CCe-------eeEcCC
Confidence 755 578875
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.82 E-value=2.5e-20 Score=166.18 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=116.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||||||+|.||++||++|.++||+|++|||+++..+++.+.+. +....+..+.++. +|+||+|+|.. .+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~------~~~~~~~~~~~~~---~DiIilavp~~-~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQL------VDEAGQDLSLLQT---AKIIFLCTPIQ-LI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTS------CSEEESCGGGGTT---CSEEEECSCHH-HH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhc------cceeeeecccccc---cccccccCcHh-hh
Confidence 68999999999999999999999999999999998888776542 2222333345555 99999999986 89
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHH-cCCeEEeccCCCCHHhhh----cCC-ccc---cCCCHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAE-LGLLYLGMGVSGGEEGAR----YGP-SLM---PGGSFEAYKH 154 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~-~g~~~i~~pv~gg~~~a~----~g~-~i~---~gg~~~~~~~ 154 (484)
+++++++.+.++++.+|+|+++..........+.... .+.|.+..|..+|+..+. .+. .++ .++++++++.
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~ 150 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLAC 150 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHH
Confidence 9999999999999999999999876655444333221 133444455555555443 233 333 4789999999
Q ss_pred HHHHHHHHhccC
Q 011501 155 IEDILLKVAAQV 166 (484)
Q Consensus 155 v~~ll~~i~~~~ 166 (484)
++++|+.+|.++
T Consensus 151 v~~l~~~lG~~v 162 (165)
T d2f1ka2 151 LRSVLEPLGVKI 162 (165)
T ss_dssp HHHHHGGGTCEE
T ss_pred HHHHHHHhCCEE
Confidence 999999999873
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.75 E-value=2.8e-18 Score=150.66 Aligned_cols=137 Identities=20% Similarity=0.231 Sum_probs=114.4
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++||+||| +|.||.+||++|.++||+|.+|||++.... ++.++. +|++++++|..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~--------------------~~~~~~---~~~v~~~~~~~- 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA--------------------ESILAN---ADVVIVSVPIN- 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH--------------------HHHHTT---CSEEEECSCGG-
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc--------------------chhhhh---ccccccccchh-
Confidence 56899999 999999999999999999999999865422 233444 89999999986
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC--ccccCCCHHHHHHHHHH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP--SLMPGGSFEAYKHIEDI 158 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~--~i~~gg~~~~~~~v~~l 158 (484)
++..++.++.+.++++.+|+|++|+.+...+++.+.+ ...|+. .|++|++.++..|. .++.|++++.++++.++
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~l 141 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQ 141 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHH
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHH
Confidence 7888999999999999999999999988776665433 346765 59999988888887 34568899999999999
Q ss_pred HHHHhccC
Q 011501 159 LLKVAAQV 166 (484)
Q Consensus 159 l~~i~~~~ 166 (484)
|+.+|+++
T Consensus 142 l~~~Ga~v 149 (152)
T d2pv7a2 142 IQIWGAKI 149 (152)
T ss_dssp HHHTTCEE
T ss_pred HHHhCCEE
Confidence 99999874
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.74 E-value=9.5e-20 Score=160.29 Aligned_cols=149 Identities=7% Similarity=-0.032 Sum_probs=112.0
Q ss_pred EEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHH
Q 011501 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQ 85 (484)
Q Consensus 6 IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~ 85 (484)
|||||+|+||.+|+.+|.+.++.+.+|+|++++.+++.+.+. ..+.+++++++. +|+||+|||++ ++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~-------~~~~~~~~~~~~---~DiVil~v~d~-~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYG-------GKAATLEKHPEL---NGVVFVIVPDR-YIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTC-------CCCCSSCCCCC------CEEECSCTT-THHH
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhccc-------ccccchhhhhcc---CcEEEEeccch-hhhH
Confidence 799999999999999998766666799999999999988764 235677787776 99999999986 7777
Q ss_pred HHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCC-ccccCCCHHHHHHHHHHHHHHhc
Q 011501 86 TIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGP-SLMPGGSFEAYKHIEDILLKVAA 164 (484)
Q Consensus 86 vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~i~~ 164 (484)
+++++. .++++|||+|+..+....+ .....+++++.+|..++...+..+. .++++||+++++.++++|+.+|.
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~ 144 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISG 144 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCS
T ss_pred HHhhhc---ccceeeeecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCC
Confidence 766552 4789999999988754432 2234467788888887777766555 78889999999999999999998
Q ss_pred cCCCCCCceEEeCC
Q 011501 165 QVPDSGPCVTYVGK 178 (484)
Q Consensus 165 ~~~~~~~~~~~~G~ 178 (484)
+ ++++++
T Consensus 145 ~-------~~~i~~ 151 (153)
T d2i76a2 145 K-------YFVIPS 151 (153)
T ss_dssp C-------EEECCG
T ss_pred c-------EEEeCC
Confidence 7 477754
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=2e-16 Score=141.18 Aligned_cols=152 Identities=15% Similarity=0.221 Sum_probs=115.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
++|+|||+|.||.+||++|.++|+ +|++||++++..+.+.+.+.. -...++..+.... .+|+||+|+|..
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~--~~dlIila~p~~- 73 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGII-----DEGTTSIAKVEDF--SPDFVMLSSPVR- 73 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSC-----SEEESCGGGGGGT--CCSEEEECSCHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcc-----hhhhhhhhhhhcc--ccccccccCCch-
Confidence 579999999999999999999996 789999999998887765421 1334455544331 389999999976
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCC----HHhhh----cCC-cccc---CCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGG----EEGAR----YGP-SLMP---GGS 148 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg----~~~a~----~g~-~i~~---gg~ 148 (484)
.+..+++++.++++++.+|+|++++.......+.+.+.. +|+. .|+.|+ +..+. .|. .++. +.+
T Consensus 74 ~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~---~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~ 150 (171)
T d2g5ca2 74 TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD 150 (171)
T ss_dssp HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG---GEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred hhhhhhhhhhccccccccccccccccHHHHHHHHHhhcc---cccccccccccccccHHHHHHHhhCCCeEEEecCCCCC
Confidence 788999999999999999999999987777666665544 3554 366664 33332 233 3332 358
Q ss_pred HHHHHHHHHHHHHHhccC
Q 011501 149 FEAYKHIEDILLKVAAQV 166 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~ 166 (484)
++.++.++.+|+.+|+++
T Consensus 151 ~~~~~~v~~~~~~lG~~v 168 (171)
T d2g5ca2 151 KKRLKLVKRVWEDVGGVV 168 (171)
T ss_dssp HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCEE
Confidence 899999999999999874
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.61 E-value=2.9e-15 Score=131.11 Aligned_cols=142 Identities=14% Similarity=0.165 Sum_probs=104.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||||||+|.||++|+.+|.++|++|++|+|++++.+++.++. ++..+.+++++++. +|+||+||++. .+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~------g~~~~~~~~~~~~~---~dvIilavkp~-~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL------ALPYAMSHQDLIDQ---VDLVILGIKPQ-LF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH------TCCBCSSHHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc------ceeeechhhhhhhc---cceeeeecchH-hH
Confidence 5999999999999999999999999999999999998887654 25678899999998 99999999864 56
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCCc-cccCC--CHHHHHHHHHHH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGPS-LMPGG--SFEAYKHIEDIL 159 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~~-i~~gg--~~~~~~~v~~ll 159 (484)
++++ +.+.++++||+..+.. ....+.+.+.. +..++. +|-.+. ....|.+ +..+. +++..+.++++|
T Consensus 71 ~~vl----~~l~~~~~iis~~agi--~~~~l~~~l~~-~~~ivr~mPN~~~--~v~~g~~~~~~~~~~~~~~~~~v~~l~ 141 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGI--SLQRLATFVGQ-DLPLLRIMPNMNA--QILQSSTALTGNALVSQELQARVRDLT 141 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTC--CHHHHHHHHCT-TSCEEEEECCGGG--GGTCEEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHh----hhcccceeEecccccc--cHHHHHhhhcc-cccchhhccchhh--hcCccceEEEeCCCCCHHHHHHHHHHH
Confidence 6554 5577889999876664 23344444432 344443 353221 1223443 33332 689999999999
Q ss_pred HHHhc
Q 011501 160 LKVAA 164 (484)
Q Consensus 160 ~~i~~ 164 (484)
+.+|.
T Consensus 142 ~~~G~ 146 (152)
T d2ahra2 142 DSFGS 146 (152)
T ss_dssp HTTEE
T ss_pred HhCCC
Confidence 99995
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.58 E-value=1.8e-14 Score=132.11 Aligned_cols=157 Identities=16% Similarity=0.147 Sum_probs=116.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh---------------hhcCCCCeeecCCHhHHHhhcC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA---------------KQEGNLPLYGFHDPESFVHSIQ 68 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~---------------~~~~~~~~~~~~s~~e~~~~l~ 68 (484)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+.. ...+ ++...++..++++.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~--~~~~~~~~~~~i~~-- 76 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTG--RLSGTTDFKKAVLD-- 76 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTT--CEEEESCHHHHHHT--
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhccc--ccccCCCHHHHHhh--
Confidence 6899999999999999999999999999999999888765211 1110 46778889998887
Q ss_pred CCcEEEEecCCCc---------hHHHHHHHHh---hhcCCCCEEEecCCCChHHHHHHHHHHHH--------cCCeEEec
Q 011501 69 KPRVIIMLVKAGS---------PVDQTIKTLS---VYMEKGDCIIDGGNEWYENTERRQKAVAE--------LGLLYLGM 128 (484)
Q Consensus 69 ~advIi~~vp~~~---------~v~~vl~~l~---~~l~~g~iiId~st~~~~~~~~~~~~l~~--------~g~~~i~~ 128 (484)
+|++++|||++. .+..+++.+. ....++++||..||+.|.+++++...+.+ ..+++.-+
T Consensus 77 -~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~ 155 (202)
T d1mv8a2 77 -SDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTN 155 (202)
T ss_dssp -CSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEEC
T ss_pred -CCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhh
Confidence 999999999852 2445555444 44568899999999999999987665432 23566777
Q ss_pred cCCCCHH----hhhcCCccccCC-CHHHHHHHHHHHHHHhcc
Q 011501 129 GVSGGEE----GARYGPSLMPGG-SFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 129 pv~gg~~----~a~~g~~i~~gg-~~~~~~~v~~ll~~i~~~ 165 (484)
|-.-.+. .....+.+++|| +++..+.++.+++.+..+
T Consensus 156 PE~~~~G~a~~d~~~~~~iViG~~~~~~~~~~~~ly~~i~~~ 197 (202)
T d1mv8a2 156 PEFLRESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAP 197 (202)
T ss_dssp CCCCCTTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSC
T ss_pred hhhhcccchhhhhcCCCeEEEEeCCHHHHHHHHHHHHhcCCC
Confidence 7443332 223334567676 788899999999888654
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.54 E-value=1.7e-15 Score=141.38 Aligned_cols=156 Identities=13% Similarity=0.043 Sum_probs=126.0
Q ss_pred eEEEEcccH--HHHHHHH------HHHhCCCcEEEEeCChhHH-HHHHH---------------HhhhcC----------
Q 011501 5 RIGLAGLAV--MGQNLAL------NIAEKGFPISVYNRTTSKV-DETVE---------------RAKQEG---------- 50 (484)
Q Consensus 5 ~IgiIGlG~--mG~~lA~------~L~~~G~~V~v~dr~~~~~-~~~~~---------------~~~~~~---------- 50 (484)
+++++|.|. ||..++. +|++.|+.|++.|.+++++ +.+.+ +..++.
T Consensus 42 ~~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~ 121 (242)
T d2b0ja2 42 SSITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHL 121 (242)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEES
T ss_pred eeeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhc
Confidence 466788776 8888877 7899999999999998764 22221 110100
Q ss_pred ----CCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEE
Q 011501 51 ----NLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 51 ----~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i 126 (484)
..+++.++|+.|+++. +|+||+|||.++.+.++++++.+++++|.+|+|+||+.+..+.++.+.+.++|++|+
T Consensus 122 ~~pEe~Gv~v~~d~~Eav~~---ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi 198 (242)
T d2b0ja2 122 VHPEDVGLKVTSDDREAVEG---ADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNIT 198 (242)
T ss_dssp SCGGGGTCEEESCHHHHHTT---CSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEE
T ss_pred CCHHHCCCEEECCHHHHHhc---CCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEE
Confidence 0036778999999988 999999999998899999999999999999999999999999999999988999999
Q ss_pred eccCCCCHHhhhcCC--ccccCCCHHHHHHHHHHHHHHhcc
Q 011501 127 GMGVSGGEEGARYGP--SLMPGGSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 127 ~~pv~gg~~~a~~g~--~i~~gg~~~~~~~v~~ll~~i~~~ 165 (484)
+++..++++ ..|. .++.+++++.++++.++|+.+|++
T Consensus 199 ~~hp~a~pe--~~g~~li~~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 199 SYHPGCVPE--MKGQVYIAEGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ECBCSSCTT--TCCCEEEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred CCCccCcCc--cccceEEecCCCCHHHHHHHHHHHHHHCCC
Confidence 887666654 2333 556778999999999999999976
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.51 E-value=1.5e-14 Score=126.51 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=100.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|||||||+|+||.+|+.+|.++| ++|.+|||++++.+.+.++. ++...++.+++ .. +|+||+||++ ++
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~------~~~~~~~~~~v-~~---~Div~lavkP-~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL------GVETSATLPEL-HS---DDVLILAVKP-QD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT------CCEEESSCCCC-CT---TSEEEECSCH-HH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc------ccccccccccc-cc---cceEEEecCH-HH
Confidence 58999999999999999999887 89999999999999888754 35667776664 33 9999999985 46
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe-ccCCCCHHhhhcCC-ccccCC--CHHHHHHHHHH
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG-MGVSGGEEGARYGP-SLMPGG--SFEAYKHIEDI 158 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~-~pv~gg~~~a~~g~-~i~~gg--~~~~~~~v~~l 158 (484)
+.++++++. ..+.++|+.....+ ...+.+.+.. ...++- +|.. +.....|. .+..+. +++..+.++++
T Consensus 70 ~~~v~~~l~---~~~~~viS~~ag~~--~~~l~~~l~~-~~~iir~mpn~--p~~~~~g~t~~~~~~~~~~~~~~~v~~l 141 (152)
T d1yqga2 70 MEAACKNIR---TNGALVLSVAAGLS--VGTLSRYLGG-TRRIVRVMPNT--PGKIGLGVSGMYAEAEVSETDRRIADRI 141 (152)
T ss_dssp HHHHHTTCC---CTTCEEEECCTTCC--HHHHHHHTTS-CCCEEEEECCG--GGGGTCEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhHHHHh---hcccEEeecccCCC--HHHHHHHhCc-CcceEeecccc--hhHhcCCcEEEEeCCCCCHHHHHHHHHH
Confidence 777766654 35788888766653 3334444432 223333 3422 23334555 344433 68889999999
Q ss_pred HHHHhc
Q 011501 159 LLKVAA 164 (484)
Q Consensus 159 l~~i~~ 164 (484)
|+.+|.
T Consensus 142 ~~~~G~ 147 (152)
T d1yqga2 142 MKSVGL 147 (152)
T ss_dssp HHTTEE
T ss_pred HHhCCC
Confidence 999995
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.49 E-value=1.5e-14 Score=131.15 Aligned_cols=155 Identities=13% Similarity=0.083 Sum_probs=111.9
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---CC----CeeecCCHhHHHhhcCCCcEE
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---NL----PLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~~----~~~~~~s~~e~~~~l~~advI 73 (484)
|.|+||+|||+|.||+++|..|+++|++|++|+|+++.++.+.+.+.+.. +. ++..+.+++++++. +|+|
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~---ad~i 81 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNG---AEII 81 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTT---CSCE
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCC---CCEE
Confidence 44668999999999999999999999999999999999998887653221 11 57788899999887 9999
Q ss_pred EEecCCCchHHHHHHHHhhh-----cCCCCEEEecCCCChHHH-HHHHHHHHH----cCCeEEeccCCCCHHhhhcCC-c
Q 011501 74 IMLVKAGSPVDQTIKTLSVY-----MEKGDCIIDGGNEWYENT-ERRQKAVAE----LGLLYLGMGVSGGEEGARYGP-S 142 (484)
Q Consensus 74 i~~vp~~~~v~~vl~~l~~~-----l~~g~iiId~st~~~~~~-~~~~~~l~~----~g~~~i~~pv~gg~~~a~~g~-~ 142 (484)
|++||.. .++.+++++.+. +.++..|+.++.+....+ ....+.+.+ ..+.++.+|-+. .+-++.-| .
T Consensus 82 iiavPs~-~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A-~Ev~~~~pt~ 159 (189)
T d1n1ea2 82 LFVIPTQ-FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFA-IEVATGVFTC 159 (189)
T ss_dssp EECSCHH-HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCH-HHHHTTCCEE
T ss_pred EEcCcHH-HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcH-HHHHcCCCcE
Confidence 9999986 788888887653 456677888876653333 223333332 234456656443 34455555 4
Q ss_pred c-ccCCCHHHHHHHHHHHH
Q 011501 143 L-MPGGSFEAYKHIEDILL 160 (484)
Q Consensus 143 i-~~gg~~~~~~~v~~ll~ 160 (484)
+ +++-+.+..+.++.+|.
T Consensus 160 ~viAs~~~~~a~~i~~lfs 178 (189)
T d1n1ea2 160 VSIASADINVARRLQRIMS 178 (189)
T ss_dssp EEEECSSHHHHHHHHHHHS
T ss_pred EEEEeCCHHHHHHHHHHhC
Confidence 4 45558888888888886
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.1e-13 Score=125.47 Aligned_cols=155 Identities=13% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCC---------------CCeeecC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGN---------------LPLYGFH 58 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~---------------~~~~~~~ 58 (484)
|+..||+|||+|.||.++|..++.+||+|.+||++++.++...+... +.+. .++..+.
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~ 81 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATST 81 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEES
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccc
Confidence 67789999999999999999999999999999999987654433211 0000 0355677
Q ss_pred CHhHHHhhcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCC
Q 011501 59 DPESFVHSIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGG 133 (484)
Q Consensus 59 s~~e~~~~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg 133 (484)
+..+.+.. +|+|+.|+|.+..++ +++.++.+.++++.++...|++.+. .++++.+... |.||+..|-.-.
T Consensus 82 d~~~a~~~---ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~HffnP~~~~~ 156 (192)
T d1f0ya2 82 DAASVVHS---TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQI--TSIANATTRQDRFAGLHFFNPVPVMK 156 (192)
T ss_dssp CHHHHTTS---CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCH--HHHHTTSSCGGGEEEEEECSSTTTCC
T ss_pred hhHhhhcc---cceehhhcccchhHHHHHHHHHhhhcccCceeeccCccccc--chhhhhccCHhHEEeeccccccCccc
Confidence 77777766 999999999987776 5568888888887777665555432 2333333221 566665442111
Q ss_pred HHhhhcCCccccC--CCHHHHHHHHHHHHHHhccC
Q 011501 134 EEGARYGPSLMPG--GSFEAYKHIEDILLKVAAQV 166 (484)
Q Consensus 134 ~~~a~~g~~i~~g--g~~~~~~~v~~ll~~i~~~~ 166 (484)
-. =++.| .+++.++.+..+++.+|+.+
T Consensus 157 lV------EIv~g~~T~~~~i~~~~~~~~~lgk~p 185 (192)
T d1f0ya2 157 LV------EVIKTPMTSQKTFESLVDFSKALGKHP 185 (192)
T ss_dssp EE------EEECCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred EE------EEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 00 13444 38999999999999999763
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.43 E-value=2e-13 Score=116.47 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=93.6
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHh
Q 011501 178 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKV 257 (484)
Q Consensus 178 ~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i 257 (484)
+.|+|+.+|+++|.+.+.++++++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+.+..+ +|.|+|.++.+
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-id~~~~~~~l---~~~~~~S~~~~~~~~~~~~~-~~~~~f~~~l~ 75 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAG-VNPDLVYQAI---RGGLAGSTVLDAKAPMVMDR-NFKPGFRIDLH 75 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCCHHHHHHHHHHHTT-CCCCSSBHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---Hhccccchhhhhccchhhhc-cCCCCchHHHH
Confidence 3699999999999999999999999999999999 9999999998 67888999999988776654 58899999999
Q ss_pred hhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 258 LDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 258 ~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.||++ ++.+.|++.|+|+|+...+ .+.|..+
T Consensus 76 ~KDl~------l~~~~a~~~~~~~p~~~~~-~~~~~~a 106 (133)
T d1vpda1 76 IKDLA------NALDTSHGVGAQLPLTAAV-MEMMQAL 106 (133)
T ss_dssp HHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred HHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99996 8999999999999988765 4555443
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.41 E-value=3.3e-13 Score=115.18 Aligned_cols=107 Identities=16% Similarity=0.149 Sum_probs=91.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcccc------ccccCCCCc
Q 011501 178 KGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIF------GIKDDKGDG 251 (484)
Q Consensus 178 ~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l------~~~~~~~~~ 251 (484)
|.|+|+.+|+++|.+.++.+++++|++.++++.| +|++.+.+++ +.+.+.|+.++...+.. ...+++.++
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~G-ld~~~~~eil---~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANG-LEAKVLAEIM---RRSSGGNWALEVYNPWPGVMENAPASRDYSGG 76 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---HTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH---HhcccchhhhhhhhhhhhccchhhhcCCCCCC
Confidence 5799999999999999999999999999999999 9999999998 57888999998764321 112357889
Q ss_pred hhHHHhhhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 252 YLVDKVLDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 252 ~~l~~i~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
|.++.+.||++ ++.+.|++.|+|+|+...+ .+.|.++
T Consensus 77 f~~~l~~KDl~------l~~~~a~~~g~~~p~~~~a-~~~~~~a 113 (134)
T d3cuma1 77 FMAQLMAKDLG------LAQEAAQASASSTPMGSLA-LSLYRLL 113 (134)
T ss_dssp SBHHHHHHHHH------HHHHHHHHHTCCCHHHHHH-HHHHHHH
T ss_pred cchHHHHHHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99999999996 9999999999999987755 5555554
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.40 E-value=3.9e-13 Score=114.43 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=91.1
Q ss_pred chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhcc-ccccccCCCCchhHHHh
Q 011501 179 GGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITAD-IFGIKDDKGDGYLVDKV 257 (484)
Q Consensus 179 ~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~-~l~~~~~~~~~~~l~~i 257 (484)
+|+|+.+|+++|.+..+.+.+++|++.++++.| +|++++.+++ +.+.+.|+.++.+.+ .+. +++|.++|.++.+
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~G-ld~~~~~~vl---~~s~~~s~~~~~~~p~~~~-~~~~~~~f~~~~~ 75 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQG-VSAEKALEVI---NASSGRSNATENLIPQRVL-TRAFPKTFALGLL 75 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHH---TTSTTCBHHHHHTHHHHTT-TSCCCCSSBHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHH---HhhhhhhhhhhhhhhHHHH-HHhhhhhhHHHHH
Confidence 489999999999999999999999999999999 9999999998 678888999888765 333 3568899999999
Q ss_pred hhhcCCCCchHHHHHHHHHcCCCcchHHHHHHHHHHhc
Q 011501 258 LDKTGMKGTGKWTVQQAADLSVAAPTIESSLDARFLSG 295 (484)
Q Consensus 258 ~~~~~~k~tg~~~~~~A~~~gvp~p~~~~av~~r~~s~ 295 (484)
.||+. ++.+.|+++|+|+|+...+ .+.|..+
T Consensus 76 ~KDl~------l~~~~a~~~g~~~pl~~~~-~~~~~~a 106 (132)
T d2cvza1 76 VKDLG------IAMGVLDGEKAPSPLLRLA-REVYEMA 106 (132)
T ss_dssp HHHHH------HHHHHHTTTCCCCHHHHHH-HHHHHHH
T ss_pred hhHHH------HHHHHHHHcCCCChHHHHH-HHHHHHH
Confidence 99996 9999999999999987654 5555544
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.39 E-value=1.7e-12 Score=116.05 Aligned_cols=113 Identities=20% Similarity=0.216 Sum_probs=89.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC---CC-----CeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG---NL-----PLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~---~~-----~~~~~~s~~e~~~~l~~advIi~ 75 (484)
+||+|||+|.||.++|..|+++||+|.+|||++++.+.+.+.+.... +. .....++++|.++. +|+||+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~---aD~iii 78 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD---ADVILI 78 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT---CSEEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcC---CCEEEE
Confidence 58999999999999999999999999999999999988876542110 00 23345678888887 999999
Q ss_pred ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc
Q 011501 76 LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL 121 (484)
Q Consensus 76 ~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~ 121 (484)
++|+. .++.+++++.+++.++++|+..++... ......+.+...
T Consensus 79 ~v~~~-~~~~~~~~i~~~l~~~~~iv~~~g~~~-~~~~~~~~~~~~ 122 (184)
T d1bg6a2 79 VVPAI-HHASIAANIASYISEGQLIILNPGATG-GALEFRKILREN 122 (184)
T ss_dssp CSCGG-GHHHHHHHHGGGCCTTCEEEESSCCSS-HHHHHHHHHHHT
T ss_pred EEchh-HHHHHHHHhhhccCCCCEEEEeCCCCc-cHHHHHHHHHHh
Confidence 99987 789999999999999999887766553 444555555554
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.37 E-value=3.9e-13 Score=120.68 Aligned_cols=151 Identities=13% Similarity=0.177 Sum_probs=100.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC--hhHHHHHHHHhhhcCCC-------CeeecCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT--TSKVDETVERAKQEGNL-------PLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~--~~~~~~~~~~~~~~~~~-------~~~~~~s~~e~~~~l~~advIi 74 (484)
|||+|||+|.||.++|..|+++|++|.+|.|+ ++.++.+.+...+. .+ ++...++.+++++. +|+||
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~---ad~Ii 76 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHP-RLGVKLNGVEIFWPEQLEKCLEN---AEVVL 76 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBT-TTTBCCCSEEEECGGGHHHHHTT---CSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhh-hhcchhccccccccccHHHHHhc---cchhh
Confidence 69999999999999999999999999999884 44455554432211 01 24456677888777 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHH--HHHHHHHHHc------CCeEEeccCCCCHHhhhcCC--ccc
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENT--ERRQKAVAEL------GLLYLGMGVSGGEEGARYGP--SLM 144 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~--~~~~~~l~~~------g~~~i~~pv~gg~~~a~~g~--~i~ 144 (484)
++||.. .++++++++.+++++..+|+.+....+.+. ....+.+.+. .+.++..|-+.. +-++.-| .++
T Consensus 77 ~avps~-~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~-Ei~~~~pt~~vi 154 (180)
T d1txga2 77 LGVSTD-GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAR-EVAKRMPTTVVF 154 (180)
T ss_dssp ECSCGG-GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHH-HHHTTCCEEEEE
T ss_pred cccchh-hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHH-HHHcCCCcEEEE
Confidence 999986 899999999999976655554433321111 1122222221 233455554433 3444555 455
Q ss_pred cCCCHHHHHHHHHHHH
Q 011501 145 PGGSFEAYKHIEDILL 160 (484)
Q Consensus 145 ~gg~~~~~~~v~~ll~ 160 (484)
++.+.+..+.++.+|+
T Consensus 155 as~~~~~a~~i~~~f~ 170 (180)
T d1txga2 155 SSPSESSANKMKEIFE 170 (180)
T ss_dssp ECSCHHHHHHHHHHHC
T ss_pred EcCCHHHHHHHHHHHC
Confidence 6668888888888874
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.32 E-value=1.8e-12 Score=116.92 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=101.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-------hcCCC----------CeeecCCHhHHHh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-------QEGNL----------PLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-------~~~~~----------~~~~~~s~~e~~~ 65 (484)
..||+|||+|.||.++|..++.+|++|.+||++++.+++..+... ..+.. ++....+.+++ .
T Consensus 4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~ 82 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDF-G 82 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTG-G
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccccc-c
Confidence 368999999999999999999999999999999987665443211 00000 24444555443 3
Q ss_pred hcCCCcEEEEecCCCchHH-HHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc----CCeEEeccCCCCHHhhhcC
Q 011501 66 SIQKPRVIIMLVKAGSPVD-QTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL----GLLYLGMGVSGGEEGARYG 140 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~-~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~----g~~~i~~pv~gg~~~a~~g 140 (484)
+ +|+|+.++|.+..++ +++.++.+..+++.+|...|++.+. .++.+.+... |.||+..|- .-
T Consensus 83 ~---adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i--~~la~~~~~p~r~~g~Hf~nP~~--------~~ 149 (186)
T d1wdka3 83 N---VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISI--SLLAKALKRPENFVGMHFFNPVH--------MM 149 (186)
T ss_dssp G---CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCH--HHHGGGCSCGGGEEEEECCSSTT--------TC
T ss_pred c---cceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccH--HHHHHhccCchheEeeccccCcc--------cC
Confidence 3 999999999997777 4568888888888877766665533 2333333221 444443331 11
Q ss_pred C--ccccC--CCHHHHHHHHHHHHHHhccC
Q 011501 141 P--SLMPG--GSFEAYKHIEDILLKVAAQV 166 (484)
Q Consensus 141 ~--~i~~g--g~~~~~~~v~~ll~~i~~~~ 166 (484)
+ =++.| .+++.++.+..+++.+++.+
T Consensus 150 ~lVEiv~~~~T~~~~~~~~~~~~~~lgk~p 179 (186)
T d1wdka3 150 PLVEVIRGEKSSDLAVATTVAYAKKMGKNP 179 (186)
T ss_dssp CEEEEEECSSCCHHHHHHHHHHHHHTTCEE
T ss_pred CeEEECCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 1 13433 38899999999999999763
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.26 E-value=3.1e-11 Score=109.42 Aligned_cols=150 Identities=12% Similarity=0.081 Sum_probs=98.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh-----------hcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK-----------QEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~-----------~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
|||+|||+|.+|.++|..|+ .||+|++||.++++++.+.+... +....++....+....... +|+
T Consensus 1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~---~~i 76 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKE---AEL 76 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHH---CSE
T ss_pred CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhc---ccc
Confidence 69999999999999998886 69999999999999887753110 0000134444555555555 999
Q ss_pred EEEecCCCch----------HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHHh----hh
Q 011501 73 IIMLVKAGSP----------VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEEG----AR 138 (484)
Q Consensus 73 Ii~~vp~~~~----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~----a~ 138 (484)
+++|||.+.. ++...+.+.. ..++.+|+-.||..|.+++++.+.+... ++.-+|-.-.+.. ..
T Consensus 77 i~v~vpt~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 77 VIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNL 153 (196)
T ss_dssp EEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHH
T ss_pred ccccCCccccccCCCcceeEEeehhhhhhh-cccceeEEeeeecCceeeeeeeeccchh--hhccchhhcchhhhHhhcc
Confidence 9999998732 2333344443 4578899999999999998887766544 3444563322221 22
Q ss_pred cCCccccCCCHHHHHHHHHHHH
Q 011501 139 YGPSLMPGGSFEAYKHIEDILL 160 (484)
Q Consensus 139 ~g~~i~~gg~~~~~~~v~~ll~ 160 (484)
..+.++.|++.+...++..+++
T Consensus 154 ~p~riv~G~~~~~~~~~~~~~~ 175 (196)
T d1dlja2 154 YPSRIIVSCEENDSPKVKADAE 175 (196)
T ss_dssp SCSCEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEeCCHhhHHHHHHHHH
Confidence 3336778876554444444333
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=1.4e-11 Score=108.23 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=74.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
|||+|||+|.||+.+|..|+++||+|++++|++++.+.......+..........+..+.... +|+||++||.. ++
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~D~iii~vka~-~~ 76 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLAT---SDLLLVTLKAW-QV 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHT---CSEEEECSCGG-GH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcc---cceEEEeeccc-ch
Confidence 699999999999999999999999999999998754332211110000011222333444455 99999999987 89
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+++++.+.+.+.++++|+.+.|+.
T Consensus 77 ~~~~~~l~~~~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 77 SDAVKSLASTLPVTTPILLIHNGM 100 (167)
T ss_dssp HHHHHHHHTTSCTTSCEEEECSSS
T ss_pred HHHHHhhccccCcccEEeeccCcc
Confidence 999999999999999999988875
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.92 E-value=1.6e-09 Score=97.47 Aligned_cols=117 Identities=16% Similarity=0.194 Sum_probs=94.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+||+....-.. ... ++....+++++++. +|+|++++|-....
T Consensus 50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-~~~-------~~~~~~~l~~ll~~---sD~i~~~~plt~~T 118 (193)
T d1mx3a1 50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE-RAL-------GLQRVSTLQDLLFH---SDCVTLHCGLNEHN 118 (193)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH-HHH-------TCEECSSHHHHHHH---CSEEEECCCCCTTC
T ss_pred ceEEEeccccccccceeeeeccccceeeccCcccccch-hhh-------ccccccchhhcccc---CCEEEEeecccccc
Confidence 58999999999999999999999999999987653221 111 25667899999998 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
...+ .+.+..++++.++|++|.+..-+...+.+.+.+..+.....-|.
T Consensus 119 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~ 167 (193)
T d1mx3a1 119 HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVH 167 (193)
T ss_dssp TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCC
T ss_pred hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEEcC
Confidence 7766 56778899999999999999888888988888765543333333
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.89 E-value=1.5e-09 Score=96.74 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=89.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+|||++.. . ......++++++.. +|+|++++|..+..
T Consensus 43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~-------~------~~~~~~~l~ell~~---sDiv~~~~pl~~~t 106 (181)
T d1qp8a1 43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE-------G------PWRFTNSLEEALRE---ARAAVCALPLNKHT 106 (181)
T ss_dssp CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC-------S------SSCCBSCSHHHHTT---CSEEEECCCCSTTT
T ss_pred ceEEEeccccccccceeeeeccccccccccccccc-------c------ceeeeechhhhhhc---cchhhccccccccc
Confidence 57999999999999999999999999999998642 1 12346788998887 99999999998887
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ ++.+..++++.++|++|....-+...+.+.+.+..+.
T Consensus 107 ~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 107 RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred ccccccceeeeccccceEEeccccccccchhhhhhcccCcEE
Confidence 7777 6788889999999999999888888888888876554
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.86 E-value=3.5e-09 Score=95.12 Aligned_cols=121 Identities=15% Similarity=0.197 Sum_probs=98.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+...|.+|.+||+............ .....+++++++. +|+|++++|-...+
T Consensus 48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~-------~~~~~~l~~ll~~---sD~v~l~~plt~~T 117 (191)
T d1gdha1 48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQ-------ATFHDSLDSLLSV---SQFFSLNAPSTPET 117 (191)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHT-------CEECSSHHHHHHH---CSEEEECCCCCTTT
T ss_pred cceEEeecccchHHHHHHHHhhccccccccccccccchhhccc-------ccccCCHHHHHhh---CCeEEecCCCCchH
Confidence 5899999999999999999999999999998765433333221 3456789999998 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+.++ ++.+..+++|.++|++|....-+...+.+.+++..+.....-|+-.+
T Consensus 118 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV~~~E 169 (191)
T d1gdha1 118 RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGE 169 (191)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTT
T ss_pred hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEECCCCC
Confidence 8777 57778899999999999999888889999998876655444455444
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.82 E-value=5.1e-09 Score=94.38 Aligned_cols=118 Identities=16% Similarity=0.160 Sum_probs=94.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.|..-|.+|.+||+....... .. .....+++++... +|+|++++|-...+
T Consensus 44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~~--------~~~~~~l~~~l~~---sDii~~~~plt~~T 110 (197)
T d1j4aa1 44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--KK--------GYYVDSLDDLYKQ---ADVISLHVPDVPAN 110 (197)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--HT--------TCBCSCHHHHHHH---CSEEEECSCCCGGG
T ss_pred CeEEEecccccchhHHHhHhhhcccccccCcccccccc--cc--------eeeeccccccccc---cccccccCCccccc
Confidence 58999999999999999999999999999987654222 11 1235689999988 99999999988777
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGE 134 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~ 134 (484)
+..+ .+.+..+++|.++|++|.+..-+...+.+.+.+..+.....-|.-.|
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~~E 162 (197)
T d1j4aa1 111 VHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGE 162 (197)
T ss_dssp TTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTC
T ss_pred cccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccccC
Confidence 7777 56777899999999999998888888888888765554444455444
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.79 E-value=6e-09 Score=93.38 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=92.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|..+|+.|..-|.+|.+||+........... ++....+++++.+. +|+|++++|-...+
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~-------~~~~~~~l~~~l~~---sD~v~~~~plt~~T 114 (188)
T d2naca1 45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL-------NLTWHATREDMYPV---CDVVTLNCPLHPET 114 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH-------TCEECSSHHHHGGG---CSEEEECSCCCTTT
T ss_pred cceeeccccccchhhhhhhhccCceEEEEeeccccccccccc-------cccccCCHHHHHHh---ccchhhcccccccc
Confidence 589999999999999999999999999999875443333322 24667899999888 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+.++ .+.+..+++|.++|+++....-+...+.+.+.+..+.
T Consensus 115 ~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ 156 (188)
T d2naca1 115 EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLA 156 (188)
T ss_dssp TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEE
T ss_pred hhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCce
Confidence 8877 6778889999999999999988888888888775444
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.78 E-value=9.8e-09 Score=91.60 Aligned_cols=117 Identities=16% Similarity=0.178 Sum_probs=94.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.+..-|.+|.+||+.......... + +. ..+.+|+++. +|+|++++|-.+.+
T Consensus 45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~~-~-------~~-~~~l~ell~~---sDiv~~~~Plt~~T 112 (184)
T d1ygya1 45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQL-G-------IE-LLSLDDLLAR---ADFISVHLPKTPET 112 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHH-T-------CE-ECCHHHHHHH---CSEEEECCCCSTTT
T ss_pred eeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHhhc-C-------ce-eccHHHHHhh---CCEEEEcCCCCchh
Confidence 57999999999999999999999999999998765433221 1 22 4589999998 99999999998888
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
+.++ ++.+..++++.++|++|....-+...+.+.+.+..+.....-|+-
T Consensus 113 ~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV~~ 162 (184)
T d1ygya1 113 AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFA 162 (184)
T ss_dssp TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCS
T ss_pred hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeCCC
Confidence 8877 577888999999999999998888889888887655444333443
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=98.73 E-value=8.4e-09 Score=93.21 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=94.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|+.+|+.|..-|.+|.+||+.+..... ......+++++.+. +|+|++++|.....
T Consensus 46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~~l~~~---~D~v~~~~plt~~T 111 (199)
T d1dxya1 46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-----------PDFDYVSLEDLFKQ---SDVIDLHVPGIEQN 111 (199)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-----------TTCEECCHHHHHHH---CSEEEECCCCCGGG
T ss_pred eeeeeeecccccccccccccccceeeeccCCccchhhh-----------cchhHHHHHHHHHh---cccceeeecccccc
Confidence 57999999999999999999999999999987643110 11234589999988 99999999998887
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCCHH
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGGEE 135 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~ 135 (484)
+.++ .+.+..++++.++|+++....-+...+.+.+.+..+.....-|.-.++
T Consensus 112 ~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 112 THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccCCCC
Confidence 7777 567788999999999999998888888888887655544445554443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=9.9e-09 Score=91.93 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=92.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|||||+|.+|..+|+.+...|.+|.+||+....... ......+++++.+. +|+|++++|-....
T Consensus 45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-----------~~~~~~~l~ell~~---sDii~i~~plt~~T 110 (188)
T d1sc6a1 45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLG-----------NATQVQHLSDLLNM---SDVVSLHVPENPST 110 (188)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCCT-----------TCEECSCHHHHHHH---CSEEEECCCSSTTT
T ss_pred eEEEEeecccchhhhhhhcccccceEeeccccccchhh-----------hhhhhhhHHHHHhh---ccceeecccCCcch
Confidence 58999999999999999999999999999987542110 13456789999998 99999999988787
Q ss_pred HHHH-HHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCC
Q 011501 84 DQTI-KTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVS 131 (484)
Q Consensus 84 ~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~ 131 (484)
..++ ++.+..++++.++|+++.+..-+...+.+.+.+..+.....-|.
T Consensus 111 ~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~ 159 (188)
T d1sc6a1 111 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159 (188)
T ss_dssp TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred hhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence 7777 67888899999999999999888989999888765444333333
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.64 E-value=7.9e-08 Score=83.46 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.++|.|||+|.||..++.+|...|. ++++++|+.++.+.+.+.... ......+..+.+.+ +|+||.|++.+.
T Consensus 24 ~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~----~~~~~~~~~~~l~~---~Divi~atss~~ 96 (159)
T d1gpja2 24 DKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG----EAVRFDELVDHLAR---SDVVVSATAAPH 96 (159)
T ss_dssp TCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC----EECCGGGHHHHHHT---CSEEEECCSSSS
T ss_pred cCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc----ccccchhHHHHhcc---CCEEEEecCCCC
Confidence 4689999999999999999999998 699999999999888876431 12334455555555 999999998764
Q ss_pred hH--HHHHHHHhhhc--CCCCEEEecC
Q 011501 82 PV--DQTIKTLSVYM--EKGDCIIDGG 104 (484)
Q Consensus 82 ~v--~~vl~~l~~~l--~~g~iiId~s 104 (484)
.+ .+.++.....- .+..+|||.+
T Consensus 97 ~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 97 PVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ccccHhhhHHHHHhcccCCCeEEEeec
Confidence 33 34444433322 2345899986
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.63 E-value=9.5e-08 Score=83.67 Aligned_cols=121 Identities=11% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.++|.|||+|.||..+|.+|+++||+|+++|||.++++.+.+...... ..........+....+...|+++.++|...
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~- 79 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHST-PISLDVNDDAALDAEVAKHDLVISLIPYTF- 79 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEE-EEECCTTCHHHHHHHHTTSSEEEECSCGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccc-cccccccchhhhHhhhhccceeEeeccchh-
Confidence 368999999999999999999999999999999999998876432110 000111223333333344899999998763
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...+.... ...+..++|.+... .....+.+.....+..++...
T Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 122 (182)
T d1e5qa1 80 HATVIKSA---IRQKKHVVTTSYVS-PAMMELDQAAKDAGITVMNEI 122 (182)
T ss_dssp HHHHHHHH---HHHTCEEECSSCCC-HHHHHTHHHHHHTTCEEECSC
T ss_pred hhHHHHHH---HhhccceeecccCc-HHHHHHHHHhccccceeehhh
Confidence 33333333 33467788887665 455566666666777666543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.62 E-value=5.2e-08 Score=86.27 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=51.9
Q ss_pred CeEEEE-cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|||+|| |+|.||++||+.|+++||+|.+|+|++++++++.++..+.+........+....... .+.....++..
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 75 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEA---CDIAVLTIPWE 75 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHH---CSEEEECSCHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccch---hhhhhhheeee
Confidence 689999 899999999999999999999999999999888776543210011222233333333 55666665443
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.61 E-value=6.3e-08 Score=81.33 Aligned_cols=116 Identities=14% Similarity=0.163 Sum_probs=77.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~~ 81 (484)
+++.|+|+|.+|..+|+.|.+.|++|.++|.++++++++...+... +....+-.++... ++++|.+|++++++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~----~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHA----VIANATEENELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEE----EECCTTCTTHHHHHTGGGCSEEEECCCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcc----eeeecccchhhhccCCccccEEEEEcCchH
Confidence 4689999999999999999999999999999999998886544311 1111122222222 445999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
....++..+....+...+++-..+. ...+.+...|+.++-.|
T Consensus 77 ~~~~~~~~~~~~~~~~~iiar~~~~------~~~~~l~~~Gad~vi~p 118 (134)
T d2hmva1 77 QASTLTTLLLKELDIPNIWVKAQNY------YHHKVLEKIGADRIIHP 118 (134)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCSH------HHHHHHHHHTCSEEECH
T ss_pred HhHHHHHHHHHHcCCCcEEeecccH------hHHHHHHHCCCCEEECh
Confidence 5544445555555555555544432 22444566687766554
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.55 E-value=5.1e-07 Score=75.50 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=79.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~~ 81 (484)
|+|-|+|+|.+|..+|+.|.+.|++|.+.|.++++++++.++.... -+.+..+..++.+. ++.+|.++.+++++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~---vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d- 76 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDAL---VINGDCTKIKTLEDAGIEDADMYIAVTGKE- 76 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSE---EEESCTTSHHHHHHTTTTTCSEEEECCSCH-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhh---hccCcccchhhhhhcChhhhhhhcccCCcH-
Confidence 6899999999999999999999999999999999998887652110 02222333344432 45699999988776
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...-.+..++..+.+..+|.-..+.. ..+.+.+.|+.++-.|
T Consensus 77 ~~N~~~~~~~k~~~~~~iI~~~~~~~------~~~~l~~~G~d~vi~p 118 (132)
T d1lssa_ 77 EVNLMSSLLAKSYGINKTIARISEIE------YKDVFERLGVDVVVSP 118 (132)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECSSTT------HHHHHHHTTCSEEECH
T ss_pred HHHHHHHHHHHHcCCceEEEEecCHH------HHHHHHHCCCCEEECH
Confidence 44444445555666777776655543 2345566787655444
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=9.3e-07 Score=78.08 Aligned_cols=115 Identities=15% Similarity=0.130 Sum_probs=81.0
Q ss_pred CCCCeEEEEcccHHHHH-HHHHHHhCC--CcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 1 MVQTRIGLAGLAVMGQN-LALNIAEKG--FPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~-lA~~L~~~G--~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|.+.||||||+|.+|.. ....+.+.+ ++| .++|+++++.+.+.+.... ...+++.+|+++. +..|+|++|
T Consensus 1 MkkirigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~ell~~-~~id~v~I~ 74 (181)
T d1zh8a1 1 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGN-----PAVFDSYEELLES-GLVDAVDLT 74 (181)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSS-----CEEESCHHHHHHS-SCCSEEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccc-----cceeeeeeccccc-cccceeecc
Confidence 66679999999999987 466776644 354 4789999998888765431 3567899999875 448999999
Q ss_pred cCCCchHHHHHHHHhhhcCCC-CEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 77 VKAGSPVDQTIKTLSVYMEKG-DCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g-~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+|+..+.+-+. .++. .| .++++- -+....+..++.+..++.+..+
T Consensus 75 tp~~~h~~~~~-~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~ 121 (181)
T d1zh8a1 75 LPVELNLPFIE-KALR---KGVHVICEKPISTDVETGKKVVELSEKSEKTV 121 (181)
T ss_dssp CCGGGHHHHHH-HHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCSSCE
T ss_pred ccccccccccc-cccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhCCeE
Confidence 99986655443 3333 33 466663 2334567777888777777543
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=9.9e-07 Score=76.53 Aligned_cols=111 Identities=19% Similarity=0.155 Sum_probs=79.3
Q ss_pred CCeEEEEcccHHHHH-HHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGLAVMGQN-LALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~-lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++||||||+|.||.. ....+... ++++ .+||+++++.+.+.+.. ++..+++.+++.++ +|+|++++|+
T Consensus 1 Kiri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~------~~~~~~~~~~l~~~---~D~V~I~tp~ 71 (164)
T d1tlta1 1 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW------RIPYADSLSSLAAS---CDAVFVHSST 71 (164)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH------TCCBCSSHHHHHTT---CSEEEECSCT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc------cccccccchhhhhh---cccccccccc
Confidence 368999999999986 45556554 5564 57899999988887654 25667889988876 9999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
..+.+.+...+... -.++++- -+..+.+..++.+..++.|..+
T Consensus 72 ~~h~~~~~~al~~g---k~V~~EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 72 ASHFDVVSTLLNAG---VHVCVDKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp THHHHHHHHHHHTT---CEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred hhcccccccccccc---ceeeccccccCCHHHHHHHHHHHHHcCCcE
Confidence 86655544433321 2466663 3344678888888877777654
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.41 E-value=1.3e-06 Score=77.17 Aligned_cols=116 Identities=18% Similarity=0.178 Sum_probs=82.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+||||||+|.||...+..|... +++|. ++|+++++.+.+.+..... ...+.+++++++++. ...|+|++++|+..
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~ll~~-~~iD~v~I~tp~~~ 78 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYP--ESTKIHGSYESLLED-PEIDALYVPLPTSL 78 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCC--TTCEEESSHHHHHHC-TTCCEEEECCCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccc--cceeecCcHHHhhhc-cccceeeecccchh
Confidence 5899999999999999998876 55665 7899999888876643210 124578899999875 35899999999987
Q ss_pred hHHHHHHHHhhhcCCCC-EEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 82 PVDQTIKTLSVYMEKGD-CIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~-iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
+.+-.... ++.|. ++++- -...+.+..++.+..++.+..+.
T Consensus 79 h~~~~~~~----l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~ 121 (184)
T d1ydwa1 79 HVEWAIKA----AEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM 121 (184)
T ss_dssp HHHHHHHH----HTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred hcchhhhh----hhccceeecccccccCHHHHHHHHHHHHhhCCEEE
Confidence 66544333 33444 45552 22345677778877777776553
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.33 E-value=3.1e-06 Score=71.95 Aligned_cols=99 Identities=9% Similarity=0.104 Sum_probs=65.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhh---cCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQ---EGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~---~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.+||+|||+|.+|.++|..|+..| .+|.+||+++++.+........ ..........+++++ +. ||+|+++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~~-~~---adivvita 80 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDC-KD---ADLVVITA 80 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGG-TT---CSEEEECC
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHHh-cc---ccEEEEec
Confidence 469999999999999999999987 4899999999876543322111 001123445566654 33 99999987
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..+. .++++.+.+..+ .+..++|..||-
T Consensus 81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~-~p~aivivvtNP 123 (146)
T d1ez4a1 81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDS-GFDGIFLVAANP 123 (146)
T ss_dssp CC----------CHHHHHHHHHHHHHHHHHT-TCCSEEEECSSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhhc-CCCcEEEEeCCc
Confidence 4431 133444556654 466788888763
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=98.33 E-value=2.7e-06 Score=73.85 Aligned_cols=112 Identities=10% Similarity=0.039 Sum_probs=79.4
Q ss_pred CeEEEEcccHHHHH-HHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQN-LALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~-lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+||||||+|.||.. ....+.+. +.++.++|+++++.+.+.+.... ...+++.+++++. ..|+|++|+|+..
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~ll~~--~iD~V~I~tp~~~ 74 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRV-----SATCTDYRDVLQY--GVDAVMIHAATDV 74 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTC-----CCCCSSTTGGGGG--CCSEEEECSCGGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccc-----ccccccHHHhccc--ccceecccccccc
Confidence 58999999999976 45566655 45888999999998888765431 2356788888763 4899999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.+.+...+... -.++++- -+....+..++.+...++|..+
T Consensus 75 H~~~~~~al~~g---k~V~~EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 75 HSTLAAFFLHLG---IPTFVDKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp HHHHHHHHHHTT---CCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccccc---cccccCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 666554443322 2466763 2334467788888877777654
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.33 E-value=1e-06 Score=75.93 Aligned_cols=90 Identities=18% Similarity=0.276 Sum_probs=71.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|+|||.|..|.+-|+||.+.|.+|++--|...+ .+...+.+ +. ..+++|+++. +|+|++.+|+. .
T Consensus 17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~G-------f~-v~~~~eA~~~---aDiim~L~PD~-~ 84 (182)
T d1np3a2 17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHG-------LK-VADVKTAVAA---ADVVMILTPDE-F 84 (182)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTT-------CE-EECHHHHHHT---CSEEEECSCHH-H
T ss_pred CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhc-------cc-cccHHHHhhh---cCeeeeecchH-H
Confidence 58999999999999999999999999998877653 33333222 33 3589999988 99999999976 3
Q ss_pred HHHHH-HHHhhhcCCCCEEEecCC
Q 011501 83 VDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl-~~l~~~l~~g~iiId~st 105 (484)
-.++. +++.|++++|+.+.-...
T Consensus 85 q~~vy~~~I~p~lk~g~~L~FaHG 108 (182)
T d1np3a2 85 QGRLYKEEIEPNLKKGATLAFAHG 108 (182)
T ss_dssp HHHHHHHHTGGGCCTTCEEEESCC
T ss_pred HHHHHHHhhhhhcCCCcEEEEecc
Confidence 34555 589999999998876554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.22 E-value=2.2e-06 Score=73.91 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=75.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC-c
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG-S 81 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~-~ 81 (484)
..||.|||.|..|..=++...+.|-+|+++|.++++.+++....... -.....+.+.+.+.++++|+||.++--+ .
T Consensus 32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~---~~~~~~~~~~l~~~~~~aDivI~aalipG~ 108 (168)
T d1pjca1 32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSR---VELLYSNSAEIETAVAEADLLIGAVLVPGR 108 (168)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGG---SEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhccc---ceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence 35899999999999999999999999999999999998887765432 1233344545555555699999987422 1
Q ss_pred hHHHHH-HHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTI-KTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl-~~l~~~l~~g~iiId~st~ 106 (484)
....++ ++....+++|.+|||.+-.
T Consensus 109 ~aP~lIt~~mv~~Mk~GSVIVDvaid 134 (168)
T d1pjca1 109 RAPILVPASLVEQMRTGSVIVDVAVD 134 (168)
T ss_dssp SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred ccCeeecHHHHhhcCCCcEEEEeecC
Confidence 112222 6777889999999998654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=98.21 E-value=8.3e-07 Score=77.65 Aligned_cols=106 Identities=13% Similarity=0.320 Sum_probs=68.7
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHhC-CCcE-EEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 1 MVQTRIGLAGLAVMGQNLALNIAEK-GFPI-SVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 1 M~~~~IgiIGlG~mG~~lA~~L~~~-G~~V-~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
|+++||||||+|.||..++..|.+. ++++ .++|++++.... .+.....+.+++.+. +|+|++|+|
T Consensus 1 M~kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~----------~~~~~~~~~~~~~~~---~D~Vvi~tp 67 (170)
T d1f06a1 1 MTNIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK----------TPVFDVADVDKHADD---VDVLFLCMG 67 (170)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS----------SCEEEGGGGGGTTTT---CSEEEECSC
T ss_pred CCcceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc----------cccccchhhhhhccc---cceEEEeCC
Confidence 7778999999999999999999875 4554 477988654211 124445555555554 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC---hHHHHHHHHHHHHcCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW---YENTERRQKAVAELGL 123 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~---~~~~~~~~~~l~~~g~ 123 (484)
+..+.+.+ .+.+..|.-+|++.... ++..+++.+..++.|.
T Consensus 68 ~~~h~~~a----~~aL~aG~~vv~~~~~~~~~~~~~~~l~~~A~~~~~ 111 (170)
T d1f06a1 68 SATDIPEQ----APKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAGN 111 (170)
T ss_dssp TTTHHHHH----HHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred CcccHHHH----HHHHHCCCcEEEecCccccCHHHHHHHHHHHHhcCc
Confidence 98654433 34466787777654322 2333344444444443
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=98.14 E-value=5.8e-06 Score=75.26 Aligned_cols=116 Identities=9% Similarity=0.109 Sum_probs=79.5
Q ss_pred eEEEEcccHHHHH-HHHHHHhC-CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 5 RIGLAGLAVMGQN-LALNIAEK-GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 5 ~IgiIGlG~mG~~-lA~~L~~~-G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
+|||||+|.||.. +...+... +++|. ++|+++++.+.+.+...-. ...+..++|.+++++. ++.|+|++++|+..
T Consensus 35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~~~d~~ell~~-~~iD~V~I~tp~~~ 112 (221)
T d1h6da1 35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYDYSNFDKIAKD-PKIDAVYIILPNSL 112 (221)
T ss_dssp EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEECSSSGGGGGGC-TTCCEEEECSCGGG
T ss_pred EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccccCchhhhccc-ccceeeeeccchhh
Confidence 7999999999975 55555554 56655 8899999998887653210 0023456889998874 35899999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeE
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLY 125 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~ 125 (484)
+.+.++..+... -.++++. -+..+.+..++.+..++.++.+
T Consensus 113 H~~~~~~al~~g---k~v~~EKPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 113 HAEFAIRAFKAG---KHVMCEKPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp HHHHHHHHHHTT---CEEEECSSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred hhhHHHHhhhcc---hhhhcCCCccCCHHHHHHHHHHHHhcCCcE
Confidence 766555544332 2456663 2335677888888777777654
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.08 E-value=1.5e-05 Score=68.13 Aligned_cols=101 Identities=11% Similarity=0.159 Sum_probs=67.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----cC-CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----EG-NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~~-~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.+|..+|..|+..++ ++.++|+++++++........ .+ ...+....+.++..+. +|+|+++
T Consensus 7 ~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~---adiVvit 83 (154)
T d1pzga1 7 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTG---ADCVIVT 83 (154)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTT---CSEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcC---CCeEEEe
Confidence 3689999999999999999888886 899999998775544322111 00 1134445666666666 9999998
Q ss_pred cCCCc--------------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS--------------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+. .++++++.+.++- +..+++..||--
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~-p~aiviivsNPv 133 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVTNPL 133 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECCSSH
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 74221 1334445555544 567777777653
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.05 E-value=2.1e-05 Score=66.84 Aligned_cols=99 Identities=11% Similarity=0.152 Sum_probs=64.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC---CCCeee-cCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG---NLPLYG-FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~---~~~~~~-~~s~~e~~~~l~~advIi~~v 77 (484)
.||+|||+|.+|.++|..|+..|. ++.+||+++++++.......... ...... ..+.++ ++. +|+|+++.
T Consensus 7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~-l~d---aDvvvita 82 (148)
T d1ldna1 7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDD-CRD---ADLVVICA 82 (148)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGG-TTT---CSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHH-hcc---ceeEEEec
Confidence 589999999999999999999876 79999999987544332221100 012222 334433 333 99999987
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+. .++++.+.+..+- ++.++|..||-.
T Consensus 83 g~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~~ivvtNPv 126 (148)
T d1ldna1 83 GANQKPGETRLDLVDKNIAIFRSIVESVMASG-FQGLFLVATNPV 126 (148)
T ss_dssp SCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHT-CCSEEEECSSSH
T ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHhhC-CCceEEEecCcc
Confidence 5432 2344556666665 566777777654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.04 E-value=2.1e-05 Score=66.23 Aligned_cols=98 Identities=15% Similarity=0.136 Sum_probs=63.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhc----C-CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQE----G-NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~----~-~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.+|.++|..|+..| .++.+||+++++.+......... . ...+..+++.+++ +. +|+|+++
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~-~d---advvvit 76 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADT-AN---SDIVIIT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGG-TT---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHh-cC---CeEEEEE
Confidence 59999999999999999999988 48999999988755432211100 0 0123334555443 43 9999998
Q ss_pred cCCC----c-----------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAG----S-----------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.-.+ . .++++.+.+.++- |+.+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~-p~aivivvtNP 120 (142)
T d1guza1 77 AGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHS-KNPIIIVVSNP 120 (142)
T ss_dssp CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-SSCEEEECCSS
T ss_pred EecCCCCCCchHHHHHHHHHHHHHHHHHhhccC-CCeEEEEecCC
Confidence 6321 1 1334445666654 67788887774
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.2e-05 Score=68.98 Aligned_cols=90 Identities=8% Similarity=-0.010 Sum_probs=68.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++++|+|.|.+|+.+|+.+...|.+|.+||++|-+.-+..-.+ .. ..+.++++.. +|+|++++.....+
T Consensus 25 k~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG-------~~-v~~~~~a~~~---adivvtaTGn~~vI 93 (163)
T d1li4a1 25 KVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEG-------YE-VTTMDEACQE---GNIFVTTTGCIDII 93 (163)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CE-ECCHHHHTTT---CSEEEECSSCSCSB
T ss_pred CEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCc-------eE-eeehhhhhhh---ccEEEecCCCccch
Confidence 5899999999999999999999999999999986533322222 23 4478888777 99999998764322
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCC
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. .+-.+.+++|.++.+.+...
T Consensus 94 ~---~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 94 L---GRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp C---HHHHTTCCTTEEEEECSSST
T ss_pred h---HHHHHhccCCeEEEEecccc
Confidence 2 34556789999999987664
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.00 E-value=2.6e-05 Score=65.67 Aligned_cols=98 Identities=12% Similarity=0.083 Sum_probs=63.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH----HHhhhcC-CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETV----ERAKQEG-NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~----~~~~~~~-~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
|||+|||+|.+|.++|..|+..|. ++.++|+++++.+... ....... ..++....+.+++. . +|+|+++
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~-~---adiVvit 76 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLK-G---SEIIVVT 76 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGT-T---CSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhc-c---ccEEEEe
Confidence 699999999999999999998875 7999999998754422 1111000 11345555665443 3 9999998
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
...+. .+.++.+.+.++ .+..+++..||-
T Consensus 77 ag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~-~p~aivivvtNP 120 (142)
T d1ojua1 77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVEN-APESKILVVTNP 120 (142)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTT-STTCEEEECSSS
T ss_pred ccccCCCCCchHHHHHHhhHHHHHHHHHHHhh-CCCcEEEEecCC
Confidence 74321 122333445554 467788888884
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.99 E-value=2.4e-05 Score=65.82 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=62.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC--CCCeee-cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG--NLPLYG-FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~--~~~~~~-~~s~~e~~~~l~~advIi~~vp 78 (484)
|||+|||+|.+|.++|..|+..+. ++.++|+++++++.......... ...... ..+.++ ++. +|+|+++..
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~-~~~---adivvitag 76 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYAD-LKG---SDVVIVAAG 76 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGG-GTT---CSEEEECCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHH-hcC---CCEEEEecc
Confidence 599999999999999999998774 89999999887654332211100 001222 234433 344 999999873
Q ss_pred CC----ch-----------HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+ .. ++++.+.+.++- |+.+++..||-.
T Consensus 77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~-p~aivivvtNPv 119 (140)
T d1a5za1 77 VPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (140)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred cccCCCcchhhhhccccchHHHHHHHHHhcC-CCcEEEEeCCcH
Confidence 32 11 233335555544 667888877643
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=97.99 E-value=7.2e-06 Score=73.01 Aligned_cols=93 Identities=11% Similarity=0.105 Sum_probs=67.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC------CcEEEEeCCh-hHHHHHHHHhhhcCCCCee--ecCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG------FPISVYNRTT-SKVDETVERAKQEGNLPLY--GFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G------~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~--~~~s~~e~~~~l~~advIi 74 (484)
++|+|||.|..|.+-|+||.+.| ..|.+-=|.. ...+...+.+- ... ...+++|+++. +|+|+
T Consensus 45 KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf-----~v~~~~v~~v~EAv~~---ADiVm 116 (226)
T d1qmga2 45 KQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGF-----SEENGTLGDMWETISG---SDLVL 116 (226)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTC-----CGGGTCEEEHHHHHHT---CSEEE
T ss_pred CEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCC-----ccCCCcccCHHHHHhh---CCEEE
Confidence 58999999999999999999954 5677664443 23334443321 111 13478888887 99999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.+|+. .-.++.+++.|++++|+++.-.-.
T Consensus 117 iLlPDe-~Q~~vy~~I~p~Lk~G~~L~FaHG 146 (226)
T d1qmga2 117 LLISDS-AQADNYEKVFSHMKPNSILGLSHG 146 (226)
T ss_dssp ECSCHH-HHHHHHHHHHHHSCTTCEEEESSS
T ss_pred EecchH-HHHHHHHHHHHhcCCCceeeecch
Confidence 999986 445577899999999998876544
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.96 E-value=2.7e-05 Score=65.65 Aligned_cols=98 Identities=17% Similarity=0.188 Sum_probs=64.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----cC-CCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----EG-NLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~~-~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|.++|..|+.++. ++.++|+++++.+........ .. ..++..+.+.+++.. +|+|+++.
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~----advvvita 77 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTAN----SDVIVVTS 77 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTT----CSEEEECC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcC----CCEEEEee
Confidence 589999999999999999998875 899999998875443322110 00 113555677776543 89999998
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..+. .++++++.+..+- +..+++..||-
T Consensus 78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~-p~aivivvtNP 120 (142)
T d1uxja1 78 GAPRKPGMSREDLIKVNADITRACISQAAPLS-PNAVIIMVNNP 120 (142)
T ss_dssp SCC---------CHHHHHHHHHHHHHHHGGGC-TTCEEEECSSS
T ss_pred eccCCcCcchhHHHhHHHHHHHHHHHHHhccC-CCceEEEeCCc
Confidence 5431 1234445555543 55677666653
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.94 E-value=8.3e-05 Score=62.55 Aligned_cols=99 Identities=16% Similarity=0.260 Sum_probs=63.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhh----cCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQ----EGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~----~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.||+|||+|.+|.++|..|+..|. ++.++|+++++++........ .+...+...++.++ ++. +|+|+++.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~-~~d---aDvVVita 77 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI-CRD---ADMVVITA 77 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG-GTT---CSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH-hhC---CcEEEEec
Confidence 589999999999999999999886 899999999876543221111 00112334455554 333 99999987
Q ss_pred CCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
-.+. .++++.+++.++- ++.++|..||--
T Consensus 78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNPv 121 (143)
T d1llda1 78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVA-PNAIYMLITNPV 121 (143)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-TTSEEEECCSSH
T ss_pred ccccCCCCchhhhhhhhHHHHHHHHHHHHhhC-CCeEEEEeCCch
Confidence 4331 1223335555554 566777777643
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.92 E-value=2.5e-05 Score=67.06 Aligned_cols=101 Identities=16% Similarity=0.135 Sum_probs=63.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcC---CC-CeeecCCHhHHHhhcCCCcEEEE
Q 011501 2 VQTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEG---NL-PLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 2 ~~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~---~~-~~~~~~s~~e~~~~l~~advIi~ 75 (484)
+..||+|||+|.+|.++|..|+..|. ++.++|+++++++.......... +. ......+.+++ +. +|+|++
T Consensus 18 ~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~-~~---adivvi 93 (159)
T d2ldxa1 18 SRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVS-AN---SKLVII 93 (159)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGG-TT---EEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhh-cc---ccEEEE
Confidence 44689999999999999999999886 89999999887654332221110 00 12334555554 33 899998
Q ss_pred ecCCCc-----------hHHHHHHHHhhh---cCCCCEEEecCCC
Q 011501 76 LVKAGS-----------PVDQTIKTLSVY---MEKGDCIIDGGNE 106 (484)
Q Consensus 76 ~vp~~~-----------~v~~vl~~l~~~---l~~g~iiId~st~ 106 (484)
+...+. .-..+++++.+. ..++.+++..||-
T Consensus 94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNP 138 (159)
T d2ldxa1 94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138 (159)
T ss_dssp CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSS
T ss_pred ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCc
Confidence 774321 011223333332 2467788888873
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.91 E-value=6.4e-05 Score=64.45 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=64.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc---CCC-CeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE---GNL-PLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~---~~~-~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
..||+|||+|.+|.++|..|+..|. ++.+||+++++.+......... .+. ......+.+++ +. +|+|+++
T Consensus 20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~-~~---adiVVit 95 (160)
T d1i0za1 20 NNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVT-AN---SKIVVVT 95 (160)
T ss_dssp SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGG-TT---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhc-cc---ccEEEEe
Confidence 3599999999999999999999997 8999999988764433221110 000 12233445443 33 9999997
Q ss_pred cCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+. .+++++.++.+. .++.++|..||-.
T Consensus 96 Ag~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~-~p~aiiivvtNPv 140 (160)
T d1i0za1 96 AGVRQQEGESRLNLVQRNVNVFKFIIPQIVKY-SPDCIIIVVSNPV 140 (160)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHHHHhc-CCCcEEEEeCCch
Confidence 64321 133444555554 4667788777743
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.90 E-value=2.9e-05 Score=69.29 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=78.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|+|-|+|.+|..+|+.|.+.|.+|+++|.+++++......+ ... -+++++... .||+++-|-..+.-.
T Consensus 28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g-------~~~-~~~~~~~~~--~~DI~iPcA~~~~I~ 97 (201)
T d1c1da1 28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALG-------HTA-VALEDVLST--PCDVFAPCAMGGVIT 97 (201)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT-------CEE-CCGGGGGGC--CCSEEEECSCSCCBC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhc-------ccc-cCccccccc--cceeeeccccccccc
Confidence 5799999999999999999999999999999999887766543 222 356666653 489888776554333
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.+.++. + +-++|+...|.. .+.+...+.+.++|+.|+.-
T Consensus 98 ~~~a~~----i-~ak~i~e~AN~p-~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 98 TEVART----L-DCSVVAGAANNV-IADEAASDILHARGILYAPD 136 (201)
T ss_dssp HHHHHH----C-CCSEECCSCTTC-BCSHHHHHHHHHTTCEECCH
T ss_pred HHHHhh----h-hhheeeccCCCC-cchhhHHHHhcccceEEEeh
Confidence 333333 3 346788777764 33444567788999988653
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.84 E-value=5.5e-05 Score=63.92 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=62.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhc---CCCC-eeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQE---GNLP-LYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~---~~~~-~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+||+|||+|.+|.++|..|+..|. ++.+||+++++.+......... -... .....+.+++ +. +|+||++.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l-~~---adiVVita 77 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAAL-AD---ADVVISTL 77 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGG-TT---CSEEEECC
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHh-cc---ccEEEEec
Confidence 689999999999999999998774 8999999998764433221110 0111 2233455543 43 99999986
Q ss_pred CCCc-------------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGS-------------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~-------------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+. .++++.+.+..+ .++.++|..||--
T Consensus 78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~-~p~aivivvtNPv 125 (146)
T d1hyha1 78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKES-GFHGVLVVISNPV 125 (146)
T ss_dssp SCGGGTC-------CTTHHHHHHHHHHHHHHHHHT-TCCSEEEECSSSH
T ss_pred cccccccccCCccHHHHHHHHHHHHHHHHHHHhhc-CCCeEEEEecCcH
Confidence 4321 022333444443 4677888887753
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.84 E-value=0.0001 Score=61.98 Aligned_cols=99 Identities=11% Similarity=0.090 Sum_probs=63.3
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCC---eeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLP---LYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~---~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.||+|||+ |.+|+++|..|+..|. ++.++|.++.+.+.+--..... ..+ .....+..+..+. +|+|+++.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~-~~~~~~~~~~~~~~~~~~~---aDivVita 76 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET-RATVKGYLGPEQLPDCLKG---CDVVVIPA 76 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSS-SCEEEEEESGGGHHHHHTT---CSEEEECC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhh-hcCCCeEEcCCChHHHhCC---CCEEEECC
Confidence 48999995 9999999999999886 7999999876644432211110 001 1122344454554 99999986
Q ss_pred CCC---------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAG---------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
..+ ..++++++.+.++ .+..+|+..||--
T Consensus 77 g~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~-~p~~iiivvtNPv 120 (144)
T d1mlda1 77 GVPRKPGMTRDDLFNTNATIVATLTAACAQH-CPDAMICIISNPV 120 (144)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSCH
T ss_pred CcCCCCCCCcchHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 432 1244555666666 4667777777643
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.77 E-value=0.00017 Score=61.08 Aligned_cols=100 Identities=14% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhh----cC-CCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQ----EG-NLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~----~~-~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.+||+|||+|.+|.++|..|...+. ++.+||+++++.+........ .+ ...+....+.+++ +. +|+|+++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~-~~---advvvit 78 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDL-AG---ADVVIVT 78 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGG-TT---CSEEEEC
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccccc-CC---CcEEEEe
Confidence 4699999999999999998888775 799999998775544322110 00 1123334445444 33 9999998
Q ss_pred cCCCc--------------------hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 77 VKAGS--------------------PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 77 vp~~~--------------------~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
...+. .++++++.+..+ .++.+++..||--
T Consensus 79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~-~p~aivivvtNPv 128 (150)
T d1t2da1 79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKN-CPNAFIIVVTNPV 128 (150)
T ss_dssp CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHH-CTTSEEEECSSSH
T ss_pred cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhc-CCCeEEEEecCch
Confidence 75321 123333455554 3677888887753
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.76 E-value=4.3e-05 Score=62.00 Aligned_cols=103 Identities=19% Similarity=0.214 Sum_probs=79.0
Q ss_pred CeEEEEc----ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAG----LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIG----lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+||| .+..|..+.++|.+.||+|+.++++.+.+. +...+.++.|+-.. +|++++++|.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i~------------G~~~y~sl~~lp~~---~D~vvi~vp~ 66 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIE------------GLKCYRSVRELPKD---VDVIVFVVPP 66 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET------------TEECBSSGGGSCTT---CCEEEECSCH
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccccc------------Cccccccchhcccc---ceEEEEEeCH
Confidence 5799999 478999999999999999988887654321 36788899988776 8999999998
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
. .+.++++++... ....+++..++.. +++.+.+++.|+.+++
T Consensus 67 ~-~~~~~l~~~~~~-g~k~v~~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 67 K-VGLQVAKEAVEA-GFKKLWFQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp H-HHHHHHHHHHHT-TCCEEEECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred H-HHHHHHHHHHhc-CCceEEeccchhh----HHHHHHHHHcCCEEEc
Confidence 6 677788777653 2446777766654 2456677788998876
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.74 E-value=0.00012 Score=61.51 Aligned_cols=98 Identities=13% Similarity=0.179 Sum_probs=57.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCC--Ceeec-CCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNL--PLYGF-HDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~~-~s~~e~~~~l~~advIi~~vp 78 (484)
+||+|||+|.+|..+|..|+.++. ++.+||+++++++...........+ ..... .+.++ ++ .+|+|+++..
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~-~~---~adivvitag 77 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSD-VK---DCDVIVVTAG 77 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGG-GT---TCSEEEECCC
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHH-hC---CCceEEEecc
Confidence 589999999999999999999886 8999999988654333222111000 12222 23333 33 3999999853
Q ss_pred CCc---------------hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 79 AGS---------------PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 79 ~~~---------------~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+. .++++++.+.++- ++.++|..||-
T Consensus 78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~-p~ai~ivvtNP 119 (142)
T d1y6ja1 78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILVVSNP 119 (142)
T ss_dssp C------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEECSSS
T ss_pred cccCcCcchhHHhhHHHHHHHHHHHHhhccC-CCceEEEecCh
Confidence 321 1223334455544 56677777763
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1e-05 Score=72.30 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=53.6
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEec
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~v 77 (484)
|.|+||.|+| .|.+|..++..|+++||+|.++.|++++.......+. .+.. ..+.+++.+.++.+|+||.++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~-----~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPA-----HVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCS-----EEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccccc-----ccccccccchhhHHHHhcCCCEEEEEe
Confidence 8899999999 6999999999999999999999999987543321111 1111 134455555556689888887
Q ss_pred CC
Q 011501 78 KA 79 (484)
Q Consensus 78 p~ 79 (484)
..
T Consensus 76 g~ 77 (205)
T d1hdoa_ 76 GT 77 (205)
T ss_dssp CC
T ss_pred cc
Confidence 54
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.73 E-value=4.2e-05 Score=65.50 Aligned_cols=97 Identities=11% Similarity=0.171 Sum_probs=61.1
Q ss_pred CC-CCeEEEEcccHHHHH-HHHHHHhCCC-cE-EEEeCChhHH-HHHHHHhhhcCCCCee-ecCCHhHHHhh--cCCCcE
Q 011501 1 MV-QTRIGLAGLAVMGQN-LALNIAEKGF-PI-SVYNRTTSKV-DETVERAKQEGNLPLY-GFHDPESFVHS--IQKPRV 72 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~-lA~~L~~~G~-~V-~v~dr~~~~~-~~~~~~~~~~~~~~~~-~~~s~~e~~~~--l~~adv 72 (484)
|+ +.||||||+|.+|.. +...|..... ++ .+.+|+++.. ..+.+.. ++. .+.+.+++.+. +.+.|+
T Consensus 1 M~kkirvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~------~i~~~~~~~d~l~~~~~~~~iDi 74 (157)
T d1nvmb1 1 MNQKLKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM------GVTTTYAGVEGLIKLPEFADIDF 74 (157)
T ss_dssp CCSCEEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT------TCCEESSHHHHHHHSGGGGGEEE
T ss_pred CCCCcEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc------CCcccccceeeeeecccccccCE
Confidence 65 358999999999986 5566655543 44 5668887532 2333322 132 33446655542 224799
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
||+++|++.++... .....++.|..|||.|.
T Consensus 75 Vf~ATpag~h~~~~--~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 75 VFDATSASAHVQNE--ALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp EEECSCHHHHHHHH--HHHHHHCTTCEEEECST
T ss_pred EEEcCCchhHHHhH--HHHHHHHcCCEEEEccc
Confidence 99999987655432 22334678999999997
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.71 E-value=3.9e-05 Score=66.78 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=69.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-----------------------cCCH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-----------------------FHDP 60 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-----------------------~~s~ 60 (484)
.+|-|||.|..|..=++.....|-.|+++|.++++.+++...+... +.. ....
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~----i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~ 105 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKF----ITVDDEAMKTAETAGGYAKEMGEEFRKKQA 105 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEE----CCC-----------------------CCHH
T ss_pred cEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcce----EEEeccccccccccccchhhcCHHHHHHHH
Confidence 5899999999999999999999999999999999998887765321 100 0112
Q ss_pred hHHHhhcCCCcEEEEecCCCc-hHHHHH-HHHhhhcCCCCEEEecCC
Q 011501 61 ESFVHSIQKPRVIIMLVKAGS-PVDQTI-KTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 61 ~e~~~~l~~advIi~~vp~~~-~v~~vl-~~l~~~l~~g~iiId~st 105 (484)
+.+.+.++++|+||.++--+- ....++ +++...+++|.+|||.+-
T Consensus 106 ~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 106 EAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp HHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred HHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence 233444667999998773221 111122 677788999999999754
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=6.7e-05 Score=65.02 Aligned_cols=113 Identities=17% Similarity=0.108 Sum_probs=76.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|.|+|+|-.+++++..|.+.|.+|+++||++++.+.+.+.....+ .+... +..+.. ...+|+||-|+|.+..-
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~--~~~~~-~~~~~~--~~~~dliIN~Tp~G~~~ 93 (170)
T d1nyta1 19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG--SIQAL-SMDELE--GHEFDLIINATSSGISG 93 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS--SEEEC-CSGGGT--TCCCSEEEECCSCGGGT
T ss_pred CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc--ccccc-cccccc--ccccceeecccccCccc
Confidence 58999999999999999999999999999999999998877544321 22222 233321 23489999999877321
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+...--...+.++.+++|.--.+.. | .+.+..+++|..
T Consensus 94 -~~~~~~~~~~~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~ 131 (170)
T d1nyta1 94 -DIPAIPSSLIHPGIYCYDMFYQKGK-T-PFLAWCEQRGSK 131 (170)
T ss_dssp -CCCCCCGGGCCTTCEEEESCCCSSC-C-HHHHHHHHTTCC
T ss_pred -CCCCCcHHHhccCcEEEEeecCCCC-C-HHHHHHHHcCCC
Confidence 1100012346788999999765533 3 344555666753
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.67 E-value=3e-05 Score=67.50 Aligned_cols=114 Identities=20% Similarity=0.159 Sum_probs=72.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|.|+|.|-++.+++..|.+.+-+|++++|+.++.+.+.+.....+ ++......+ ..+..+|+||-|+|.+..
T Consensus 19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~---~~~~~~diiIN~tp~g~~- 92 (171)
T d1p77a1 19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDS---IPLQTYDLVINATSAGLS- 92 (171)
T ss_dssp CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGG---CCCSCCSEEEECCCC----
T ss_pred CEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcc---ccccccceeeeccccccc-
Confidence 47999999999999999999988899999999999998877654321 222222111 123459999999998732
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
..........++++.+++|..=..|..| .+.+..++.|..
T Consensus 93 ~~~~~~~~~~~~~~~~~~D~vy~~p~~T-~~l~~A~~~g~~ 132 (171)
T d1p77a1 93 GGTASVDAEILKLGSAFYDMQYAKGTDT-PFIALCKSLGLT 132 (171)
T ss_dssp ----CCCHHHHHHCSCEEESCCCTTSCC-HHHHHHHHTTCC
T ss_pred ccccchhhhhhcccceeeeeeccCcccH-HHHHHHHHcCCC
Confidence 2111111223456788888865445444 334455666653
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=0.00027 Score=61.20 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=51.5
Q ss_pred CCeEEEEcccHHHHHHHH--HHHhC----CCcEEEEeCChhHHHHHHHH---hhh-cC-CCCeeecCCHhHHHhhcCCCc
Q 011501 3 QTRIGLAGLAVMGQNLAL--NIAEK----GFPISVYNRTTSKVDETVER---AKQ-EG-NLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~--~L~~~----G~~V~v~dr~~~~~~~~~~~---~~~-~~-~~~~~~~~s~~e~~~~l~~ad 71 (484)
.|||+|||.|..|.+++. .|+.. +.++.++|+++++++..... ... .+ ..++..+++.++.++. +|
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~d---ad 78 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIID---AD 78 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---CS
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccC---CC
Confidence 479999999999977543 34432 46999999999886543221 111 00 2256777899988887 99
Q ss_pred EEEEecCCC
Q 011501 72 VIIMLVKAG 80 (484)
Q Consensus 72 vIi~~vp~~ 80 (484)
+|++++..+
T Consensus 79 ~Vv~~~~~g 87 (171)
T d1obba1 79 FVINTAMVG 87 (171)
T ss_dssp EEEECCCTT
T ss_pred eEeeecccc
Confidence 999987543
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.59 E-value=0.00023 Score=64.88 Aligned_cols=115 Identities=20% Similarity=0.210 Sum_probs=75.4
Q ss_pred CeEEEEcccHHH----HHHHHHHHhC--CCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAGLAVMG----QNLALNIAEK--GFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIGlG~mG----~~lA~~L~~~--G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.||||||+|.+| ......+.+. +++|. ++|+++++.+.+.+..... ....+++.+++.+. +..|+|+++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~-~~iD~V~i~ 92 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLK---HATGFDSLESFAQY-KDIDMIVVS 92 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCT---TCEEESCHHHHHHC-TTCSEEEEC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccc---cceeecchhhcccc-cccceeecc
Confidence 489999999754 4444455543 56655 7899999988887654211 24567899999875 348999999
Q ss_pred cCCCchHHHHHHHHhhhc---CCCCEEEec-CCCChHHHHHHHHHHHHcC
Q 011501 77 VKAGSPVDQTIKTLSVYM---EKGDCIIDG-GNEWYENTERRQKAVAELG 122 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l---~~g~iiId~-st~~~~~~~~~~~~l~~~g 122 (484)
+|+..+.+.+...+.... ....++++- -.....+..++.+..++++
T Consensus 93 tp~~~h~~~~~~al~aG~~~~~~k~V~~EKPla~~~~e~~~l~~~a~~~~ 142 (237)
T d2nvwa1 93 VKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRA 142 (237)
T ss_dssp SCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCT
T ss_pred CCCcchhhHHHHHHHhcccccCCceEEEeccccCCHHHHHHHHHHHhhcC
Confidence 999877666555544321 223467763 1223456777777666654
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.56 E-value=4.8e-05 Score=73.24 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=74.6
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.++...+..+.. .+ -+|.+|||++++.+++.++.....++.+..+.+++++++. +|+|++|+++..
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~---ADIi~t~Tas~s 205 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKG---VDIITTVTADKA 205 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTT---CSEEEECCCCSS
T ss_pred ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhc---CCceeeccccCC
Confidence 579999999999988887764 34 3899999999999998876543223356789999999998 999999986541
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
...+++ ...+++|..|.-.++-.|.
T Consensus 206 -~~Pv~~--~~~l~pG~hI~aiGs~~p~ 230 (340)
T d1x7da_ 206 -YATIIT--PDMLEPGMHLNAVGGDCPG 230 (340)
T ss_dssp -EEEEEC--GGGCCTTCEEEECSCCBTT
T ss_pred -CCcccc--hhhcCCCCEEeecccchhh
Confidence 111111 1467899988888776654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=97.54 E-value=0.00014 Score=61.86 Aligned_cols=92 Identities=10% Similarity=0.029 Sum_probs=71.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
+++.|+|.|..|+++|..+...|-.|++++++|-+ .+.+... +++ ..+.+++++. +|++|+++.....+
T Consensus 24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~--alqA~md-----Gf~-v~~~~~a~~~---aDi~vTaTGn~~vI 92 (163)
T d1v8ba1 24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPIC--AIQAVME-----GFN-VVTLDEIVDK---GDFFITCTGNVDVI 92 (163)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHH--HHHHHTT-----TCE-ECCHHHHTTT---CSEEEECCSSSSSB
T ss_pred CEEEEecccccchhHHHHHHhCCCEEEEEecCchh--hHHHHhc-----CCc-cCchhHcccc---CcEEEEcCCCCccc
Confidence 58999999999999999999999999999999955 3333221 233 3688888887 99999999876422
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
. .+-...++.|.|+.+.+....+
T Consensus 93 ~---~~h~~~MKdgaIl~N~GHfd~E 115 (163)
T d1v8ba1 93 K---LEHLLKMKNNAVVGNIGHFDDE 115 (163)
T ss_dssp C---HHHHTTCCTTCEEEECSSTTTS
T ss_pred c---HHHHHHhhCCeEEEeccccchh
Confidence 2 3445678899999999876533
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.54 E-value=0.0002 Score=60.29 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=30.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChh
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~ 37 (484)
|||+|||+ |.+|.++|..|+..|. ++.++|++++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~ 37 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHS 37 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGG
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhh
Confidence 58999995 9999999999999884 8999999864
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.53 E-value=0.001 Score=54.75 Aligned_cols=104 Identities=12% Similarity=0.127 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCCCCCcccch
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPDLANVLVDP 400 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~~~~ll~~~ 400 (484)
.|+|+-+|.++|.+.++.+++++|++.+..++ ++|...+.++.+.| --+|..++...+.+.+++.. +
T Consensus 2 vG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gid~~~~~~~l~~~-~~~S~~~~~~~~~~~~~~~~------~ 68 (133)
T d1vpda1 2 IGAGNVTKLANQVIVALNIAAMSEALTLATKA------GVNPDLVYQAIRGG-LAGSTVLDAKAPMVMDRNFK------P 68 (133)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCCHHHHHHHHHHHTTCCC------C
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhc-cccchhhhhccchhhhccCC------C
Confidence 37899999999999999999999999997753 49999999999987 45788887755544333211 2
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHHh
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFDT 439 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~~ 439 (484)
.|.- .-..-+++-+...|-+.|+|+|....+..+|..
T Consensus 69 ~f~~--~l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~ 105 (133)
T d1vpda1 69 GFRI--DLHIKDLANALDTSHGVGAQLPLTAAVMEMMQA 105 (133)
T ss_dssp SSBH--HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CchH--HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 2221 123445677888999999999999999987753
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.49 E-value=0.00011 Score=70.45 Aligned_cols=95 Identities=13% Similarity=0.136 Sum_probs=73.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhC-C-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK-G-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~-G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+++|||+|.++...+..|... . .+|.+|+|++++.+.+.+..... .+..+.++++.+.. +|+|++|+|...
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~---~~~~~~~~~~a~~~---aDiV~taT~s~~ 199 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDR---GISASVQPAEEASR---CDVLVTTTPSRK 199 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHT---TCCEEECCHHHHTS---SSEEEECCCCSS
T ss_pred cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhc---CCccccchhhhhcc---ccEEEEeccCcc
Confidence 4799999999999998888752 2 48999999999999988765543 24556677777776 999999999875
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
.+-. ...+++|..|+..++..|.
T Consensus 200 P~~~-----~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 200 PVVK-----AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CCBC-----GGGCCTTCEEEECSCCSTT
T ss_pred cccc-----hhhcCCCCeEeecCCcccc
Confidence 5321 2468899999998887654
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.47 E-value=0.00022 Score=59.04 Aligned_cols=109 Identities=18% Similarity=0.030 Sum_probs=76.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHHHHccCCC-CCCcccc
Q 011501 321 VDKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKKAYDRNPD-LANVLVD 399 (484)
Q Consensus 321 ~~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~~~~~~~~-~~~ll~~ 399 (484)
.|+|+.+|.++|.+.++.+++++|++.+..++ + +|...+.++-+.| --+|+.++........-+. ..+--.+
T Consensus 2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~----G--ld~~~~~eil~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~~ 74 (134)
T d3cuma1 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVAN----G--LEAKVLAEIMRRS-SGGNWALEVYNPWPGVMENAPASRDYS 74 (134)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----T--CCHHHHHHHHHTS-TTCCHHHHHCCCSTTSSTTSGGGGTTC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----C--CCHHHHHHHHHhc-ccchhhhhhhhhhhhccchhhhcCCCC
Confidence 47899999999999999999999999998764 3 9999999999887 4578887653221111100 0000001
Q ss_pred hhHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 400 PEFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 400 ~~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
+-|. +.-..-+++-+...|-+.|+|+|+...+...|.
T Consensus 75 ~~f~--~~l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~ 111 (134)
T d3cuma1 75 GGFM--AQLMAKDLGLAQEAAQASASSTPMGSLALSLYR 111 (134)
T ss_dssp SSSB--HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCcc--hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 1121 112334567788899999999999999988664
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.41 E-value=0.00066 Score=52.90 Aligned_cols=90 Identities=19% Similarity=0.203 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLD 259 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~ 259 (484)
.+++++|++.|.+.+..+++++|.+.+|++.| +|..++.+++. .. +.. ......+..+..|++.++.+...
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g-~d~~~v~~~~~---~d---~ri-~~~~~~~~pG~G~GG~ClpKD~~- 72 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVG-VDGREVMDVIC---QD---HKL-NLSRYYMRPGFAFGGSCLPKDVR- 72 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCHHHHHHHHT---TC---TTT-TTSSTTCSCCSCCCSSSHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHh---cC---ccc-cccccccCCcccCCccccchhHH-
Confidence 46899999999999999999999999999998 99999988862 11 110 00011122233466666655431
Q ss_pred hcCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 260 KTGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 260 ~~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
.....+++.|++.+++.++
T Consensus 73 ---------al~~~a~~~~~~~~ll~~~ 91 (98)
T d1mv8a1 73 ---------ALTYRASQLDVEHPMLGSL 91 (98)
T ss_dssp ---------HHHHHHHHTTCCCTTGGGH
T ss_pred ---------HHHHHHHHcCCChHHHHHH
Confidence 3567789999999988765
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.41 E-value=0.00023 Score=59.44 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=78.8
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+|||+ +..|..++.+|.++||+|+.+|+..+.+ . +...+.+++++-.. .|++++++|.
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i---~---------G~~~~~sl~dlp~~---iD~v~i~vp~ 84 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV---L---------GRKCYPSVLDIPDK---IEVVDLFVKP 84 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE---T---------TEECBSSGGGCSSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc---C---------CCcccccccccCcc---ceEEEEEeCH
Confidence 57999995 5799999999999999998888764321 1 46778899888766 9999999988
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
. .+.++++++... ....+++..+.... +..+.+.+.|+.+++
T Consensus 85 ~-~~~~~~~e~~~~-g~k~v~~~~G~~~e----e~~~~a~~~gi~vig 126 (139)
T d2d59a1 85 K-LTMEYVEQAIKK-GAKVVWFQYNTYNR----EASKKADEAGLIIVA 126 (139)
T ss_dssp H-HHHHHHHHHHHH-TCSEEEECTTCCCH----HHHHHHHHTTCEEEE
T ss_pred H-HHHHHHHHHHHh-CCCEEEEeccccCH----HHHHHHHHCCCEEEc
Confidence 6 788888887763 34466766666552 445566778998886
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.38 E-value=0.0015 Score=55.78 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=38.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|.+|+++|+++++.+.+.+.+
T Consensus 28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~g 70 (170)
T d1e3ja2 28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCG 70 (170)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcC
Confidence 3689999999999999999999999999999999987776654
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.32 E-value=0.0012 Score=51.37 Aligned_cols=85 Identities=15% Similarity=-0.002 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhh
Q 011501 181 SGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDK 260 (484)
Q Consensus 181 ~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~ 260 (484)
.++++|++.|.+.+..+++++|.+.+|++.| ++..++.+.+.. .....+ ..+..+..|++.++.+..
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g-~d~~~v~~~~~~--d~~~~~-------~~~~pg~g~GG~ClpKD~--- 69 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRK-LNSHMIIQGISY--DDRIGM-------HYNNPSFGYGGYSLPKDT--- 69 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHT--STTTCS-------SSCCCCSSCCSSHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHh--ccccCC-------ccccCCCCcccccCcccH---
Confidence 5789999999999999999999999999998 999988776521 111111 223333456776665543
Q ss_pred cCCCCchHHHHHHHHHcCCCcchHHHH
Q 011501 261 TGMKGTGKWTVQQAADLSVAAPTIESS 287 (484)
Q Consensus 261 ~~~k~tg~~~~~~A~~~gvp~p~~~~a 287 (484)
++. .+.+.|++.|++.++
T Consensus 70 --------~al-~~~~~~~~~~ll~~~ 87 (98)
T d1dlja1 70 --------KQL-LANYNNIPQTLIEAI 87 (98)
T ss_dssp --------HHH-HHHHTTSSCSHHHHH
T ss_pred --------HHH-HHHhcCCCcHHHHHH
Confidence 233 467789999988765
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.32 E-value=0.00017 Score=62.16 Aligned_cols=111 Identities=11% Similarity=0.138 Sum_probs=73.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||+|-++.+++..|.+.|. +|++++|++++.+.+.+... .....+.. ...+|+||-|+|-+..
T Consensus 18 ~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~------~~~~~~~~-----~~~~DliINaTpiGm~ 86 (167)
T d1npya1 18 AKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG------YAYINSLE-----NQQADILVNVTSIGMK 86 (167)
T ss_dssp SCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHT------CEEESCCT-----TCCCSEEEECSSTTCT
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhh------hhhhhccc-----ccchhhheeccccCCc
Confidence 479999999999999999999997 79999999999988876542 22222221 1238999999985421
Q ss_pred --HHHHHHHH-hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 --VDQTIKTL-SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 --v~~vl~~l-~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+..--.+ ...++++.+++|.--.+. .| .+.+..+++|...++
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~ 132 (167)
T d1npya1 87 GGKEEMDLAFPKAFIDNASVAFDVVAMPV-ET-PFIRYAQARGKQTIS 132 (167)
T ss_dssp TSTTTTSCSSCHHHHHHCSEEEECCCSSS-SC-HHHHHHHHTTCEEEC
T ss_pred cccccccccccHhhcCCcceEEEEeeccC-CC-HHHHHHHHCCCeEEE
Confidence 00000000 012346789999866543 33 245566778876654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=0.0019 Score=54.06 Aligned_cols=98 Identities=16% Similarity=0.218 Sum_probs=58.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHh-C--CCcEEEEeCChhHHHHHHHHhhhcC-CCC---eeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAG-LAVMGQNLALNIAE-K--GFPISVYNRTTSKVDETVERAKQEG-NLP---LYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~-~--G~~V~v~dr~~~~~~~~~~~~~~~~-~~~---~~~~~s~~e~~~~l~~advIi~ 75 (484)
|||+||| .|.+|.++|..|+. . +.++.++|..+.......+ ..... ... +...++.++ .+. +|+||+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~D-l~h~~~~~~~~~~~~~~~~~~-~~~---aDvvvi 75 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVD-LSHIPTAVKIKGFSGEDATPA-LEG---ADVVLI 75 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHH-HHTSCSSCEEEEECSSCCHHH-HTT---CSEEEE
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHH-HHCCccccCCcEEEcCCCccc-cCC---CCEEEE
Confidence 5999999 59999999998864 3 4689999987543222221 11100 001 112334443 344 999999
Q ss_pred ecCCC---------------chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 76 LVKAG---------------SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 76 ~vp~~---------------~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+--.+ ..++++.+++.++- +..+||..||--
T Consensus 76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~-p~aivivvtNPv 121 (145)
T d2cmda1 76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTC-PKACIGIITNPV 121 (145)
T ss_dssp CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECSSSH
T ss_pred CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhC-CCcEEEEccCCc
Confidence 87432 12445556666655 567788777743
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.27 E-value=0.0013 Score=55.22 Aligned_cols=118 Identities=12% Similarity=0.148 Sum_probs=70.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCC-eeecCCHhHHHh--hcCCCcEEEEecCCCc
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLP-LYGFHDPESFVH--SIQKPRVIIMLVKAGS 81 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~-~~~~~s~~e~~~--~l~~advIi~~vp~~~ 81 (484)
.|-|+|+|.+|..++..|.+.|++|++.|.++++.....+..... ++. +.+..+-.++.+ .++++|.+|++++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~-~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~ 83 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGD-NADVIPGDSNDSSVLKKAGIDRCRAILALSDNDA 83 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCT-TCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcC-CcEEEEccCcchHHHHHhccccCCEEEEccccHH
Confidence 488999999999999999999999999999987655444332211 111 122223334433 3567999999998764
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
....++..+....+.-.+|+-+.+. .. .+.+...|+.++-.|
T Consensus 84 ~n~~~~~~~r~~~~~~~iia~~~~~--~~----~~~l~~~Gad~vi~p 125 (153)
T d1id1a_ 84 DNAFVVLSAKDMSSDVKTVLAVSDS--KN----LNKIKMVHPDIILSP 125 (153)
T ss_dssp HHHHHHHHHHHHTSSSCEEEECSSG--GG----HHHHHTTCCSEEECH
T ss_pred HHHHHHHHHHHhCCCCceEEEEcCH--HH----HHHHHHCCCCEEECH
Confidence 3333222222222333566655443 22 233455677665444
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.27 E-value=0.00011 Score=60.70 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=73.9
Q ss_pred CCeEEEEcc----cHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGL----AVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGl----G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
..+|+|||. |.+|..+.++|.+.| ++|+.+|++.+.+. +...+.|+.|+-.. +|++++++
T Consensus 8 PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i~------------G~~~y~sl~dlp~~---vDlvvi~v 72 (129)
T d2csua1 8 PKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEVQ------------GVKAYKSVKDIPDE---IDLAIIVV 72 (129)
T ss_dssp CSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEET------------TEECBSSTTSCSSC---CSEEEECS
T ss_pred CCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccccC------------CeEeecchhhcCCC---CceEEEec
Confidence 468999996 889999999998876 68999988754321 36788899988766 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCC-Ch-HH----HHHHHHHHHHcCCeEEe
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNE-WY-EN----TERRQKAVAELGLLYLG 127 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~-~~-~~----~~~~~~~l~~~g~~~i~ 127 (484)
|.. .+.++++++...--+ .+++-.+.. .. .. ..++.+...+.|+.+++
T Consensus 73 p~~-~~~~~~~~~~~~g~~-~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~G 126 (129)
T d2csua1 73 PKR-FVKDTLIQCGEKGVK-GVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIG 126 (129)
T ss_dssp CHH-HHHHHHHHHHHHTCC-EEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEEC
T ss_pred ChH-HhHHHHHHHHHcCCC-EEEEecccccccchhhHHHHHHHHHHHHHcCCEEeC
Confidence 986 788888887764323 344433221 11 11 12233445566887764
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.24 E-value=0.0026 Score=52.16 Aligned_cols=102 Identities=8% Similarity=0.028 Sum_probs=75.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHcCCCccchhhHHHHHH-HHccCCCCCCcccch
Q 011501 322 DKKKLIDDVRQALYASKICSYAQGMNLIRAKSIEKGWDLKLGELTRIWKGGCIIRAIFLDRIKK-AYDRNPDLANVLVDP 400 (484)
Q Consensus 322 ~~~~~v~~v~nai~~~~~~~~aqg~~ll~~~~~~~~~~l~~~~i~~iW~~Gcii~s~ll~~i~~-~~~~~~~~~~ll~~~ 400 (484)
|+|+-+|.+.|.+..+.+++++|++.+-++. ++|...+.++.+.| --+|+.++.... ....++.. +
T Consensus 2 G~g~~~Kl~nN~l~~~~~~~~aEal~la~~~------Gld~~~~~~vl~~s-~~~s~~~~~~~p~~~~~~~~~------~ 68 (132)
T d2cvza1 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQ------GVSAEKALEVINAS-SGRSNATENLIPQRVLTRAFP------K 68 (132)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHTTS-TTCBHHHHHTHHHHTTTSCCC------C
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHhh-hhhhhhhhhhhhHHHHHHhhh------h
Confidence 6789999999999999999999999997754 39999999999876 346777665433 22222211 1
Q ss_pred hHHHHHHhhhhhHHHHHHHHHHcCCChHHHHHHHHHHH
Q 011501 401 EFAKEIIERQSAWRRVVCLAINSGISTPGMSSSLAYFD 438 (484)
Q Consensus 401 ~~~~~~~~~~~~~~~~v~~a~~~g~p~p~~~~al~~~~ 438 (484)
.|.- .-..-+++-+...|-+.|+|+|....+...|.
T Consensus 69 ~f~~--~~~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~ 104 (132)
T d2cvza1 69 TFAL--GLLVKDLGIAMGVLDGEKAPSPLLRLAREVYE 104 (132)
T ss_dssp SSBH--HHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred hhHH--HHHhhHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 2221 22344567888899999999999998887664
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.22 E-value=0.00069 Score=61.22 Aligned_cols=110 Identities=16% Similarity=0.227 Sum_probs=81.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++|.|-|+|++|..+|+.|.+.|.+|.+.|.++..++.+..... .. ..+++++... .||+++-|--.+.-.
T Consensus 40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g------~~-~~~~~~~~~~--~cDIl~PcA~~~~I~ 110 (230)
T d1leha1 40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEG------AD-AVAPNAIYGV--TCDIFAPCALGAVLN 110 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC------CE-ECCGGGTTTC--CCSEEEECSCSCCBS
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcC------Cc-ccCCcccccc--cccEecccccccccC
Confidence 58999999999999999999999999999999999888776542 22 3355665543 499999987665433
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
++.+.. ++ -++|+...|..|.+. +..+.|.++|+.|+..
T Consensus 111 ~~~~~~----l~-ak~Ive~ANn~~t~~-ea~~~L~~rGI~~iPD 149 (230)
T d1leha1 111 DFTIPQ----LK-AKVIAGSADNQLKDP-RHGKYLHELGIVYAPD 149 (230)
T ss_dssp TTHHHH----CC-CSEECCSCSCCBSSH-HHHHHHHHHTCEECCH
T ss_pred hHHhhc----cC-ccEEEecccCCCCCc-hHHHHHHhhCcEEEee
Confidence 344333 32 368888887766433 5567788999988753
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.19 E-value=0.00024 Score=62.11 Aligned_cols=123 Identities=12% Similarity=0.161 Sum_probs=76.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHH---hhhcCCCC--eeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER---AKQEGNLP--LYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~---~~~~~~~~--~~~~~s~~e~~~~l~~advIi~~v 77 (484)
++|.|||+|-+|.+++..|.+.|. +++++||++++.+++... ........ +....+.+++.+.+..+|+||-|+
T Consensus 19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~T 98 (182)
T d1vi2a1 19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 98 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceecccc
Confidence 579999999999999999999987 799999998876654432 11100000 112234444444444599999999
Q ss_pred CCCchH--HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPV--DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v--~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|.+..- .+.+..-...++++.+++|..-.+ ..| .+.+..++.|..+++.
T Consensus 99 p~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p-~~T-~ll~~a~~~g~~~i~G 149 (182)
T d1vi2a1 99 KVGMKPLENESLVNDISLLHPGLLVTECVYNP-HMT-KLLQQAQQAGCKTIDG 149 (182)
T ss_dssp STTSTTSCSCCSCCCGGGSCTTCEEEECCCSS-SSC-HHHHHHHTTTCEEECH
T ss_pred CCccccccchhhhhHHHhhhcchhhHHhhcCc-ccc-HHHHHHHHCcCeEecc
Confidence 976221 000000123467889999996543 333 3345556778777653
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00012 Score=56.76 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=31.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+||.|+|+|..|.+.|+.|.+.|.+|++||.+..
T Consensus 6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 5799999999999999999999999999997643
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.14 E-value=0.00021 Score=61.69 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=69.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
+++|||||+|.||...+..|.+.. ..+.+++....+ .+.. . ......+.+++++. +..|+|++++|+.
T Consensus 7 k~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~---~----~~~~~~~~~e~l~~-~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 7 KFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGS---L----DEVRQISLEDALRS-QEIDVAYICSESS 76 (172)
T ss_dssp SEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCE---E----TTEEBCCHHHHHHC-SSEEEEEECSCGG
T ss_pred CcEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHH---h----hccCcCCHHHHHhC-CCcchhhhccccc
Confidence 358999999999999988887542 234444432221 0000 0 11234588888864 4479999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEec-CCCChHHHHHHHHHHHHcCCeEE
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDG-GNEWYENTERRQKAVAELGLLYL 126 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~-st~~~~~~~~~~~~l~~~g~~~i 126 (484)
.+.+.+...+... -.++++- -+..+.+.+++.+...+.|..+.
T Consensus 77 ~H~~~~~~al~~g---k~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~ 120 (172)
T d1lc0a1 77 SHEDYIRQFLQAG---KHVLVEYPMTLSFAAAQELWELAAQKGRVLH 120 (172)
T ss_dssp GHHHHHHHHHHTT---CEEEEESCSCSCHHHHHHHHHHHHHTTCCEE
T ss_pred ccccccccccccc---hhhhcCCCccccHHHHHHHHHHHHHcCCeEE
Confidence 7755444333321 2466663 23346788888887777776543
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.13 E-value=0.00012 Score=63.67 Aligned_cols=118 Identities=14% Similarity=0.152 Sum_probs=73.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe---eecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL---YGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~---~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++|-|||.|-++.+++..|.+.| +|++++|++++.+.+.+.......... ....+.... +..+|+||.|+|.+
T Consensus 19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~dliIn~tp~g 94 (177)
T d1nvta1 19 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVD---LDGVDIIINATPIG 94 (177)
T ss_dssp CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCC---CTTCCEEEECSCTT
T ss_pred CEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhc---cchhhhhccCCccc
Confidence 57999999999999999998877 899999999998887754422100000 011222222 23489999999876
Q ss_pred chHHHHHHHH--hhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 81 SPVDQTIKTL--SVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 81 ~~v~~vl~~l--~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..-....... ...+.++.+++|..-.+..+. +.+..++.|..+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~--l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 95 MYPNIDVEPIVKAEKLREDMVVMDLIYNPLETV--LLKEAKKVNAKTIN 141 (177)
T ss_dssp CTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCH--HHHHHHTTTCEEEC
T ss_pred ccccccccchhhhhccCcccceeeecCCcHhHH--HHHHHHHCCCcccC
Confidence 3211000000 123457889999876554433 34455666776654
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=97.13 E-value=0.00028 Score=58.66 Aligned_cols=105 Identities=11% Similarity=0.148 Sum_probs=79.5
Q ss_pred CeEEEEcc----cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGL----AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGl----G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|+|||+ +..|..+..+|.+.||++..++.++.. +.. .+...+.++.++-.. .|++++++|+
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i---------~g~~~~~~l~~i~~~---iD~v~v~~p~ 80 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL---------FGEEAVASLLDLKEP---VDILDVFRPP 80 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE---------TTEECBSSGGGCCSC---CSEEEECSCH
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee---------eceecccchhhccCC---CceEEEeccH
Confidence 57999997 789999999999999999999987532 111 136778888887665 8999999987
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
. .+.++++++... ..+.+++..+... .++.+.+++.|+.++.
T Consensus 81 ~-~v~~~v~~~~~~-g~k~i~~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 81 S-ALMDHLPEVLAL-RPGLVWLQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp H-HHTTTHHHHHHH-CCSCEEECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred H-HHHHHHHHHHhh-CCCeEEEecCccC----HHHHHHHHHcCCEEEc
Confidence 5 677777777653 3557777766654 2456677788998886
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=97.08 E-value=0.0016 Score=55.49 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=49.9
Q ss_pred CeEEEEcccHHHHHHHHH-HHh-C----CCcEEEEeCChhHHHHHHHHhhh--cCCCCeeecCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAVMGQNLALN-IAE-K----GFPISVYNRTTSKVDETVERAKQ--EGNLPLYGFHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~-L~~-~----G~~V~v~dr~~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~~l~~advIi~ 75 (484)
|||+|||.|..|.+++.. |+. . +.++.++|+++++.+........ .....+...++..+.++. +|+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~---aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD---AKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT---CSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCC---CCEEEE
Confidence 589999999999887744 222 1 35899999999987644322110 001245566777777776 999999
Q ss_pred ecCCC
Q 011501 76 LVKAG 80 (484)
Q Consensus 76 ~vp~~ 80 (484)
+.-.+
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87654
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.0043 Score=52.79 Aligned_cols=117 Identities=10% Similarity=0.124 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.+|.|+|+|.+|...++.+...|.++++.++++++.+.+.+.+... +.-..+........+..|++|.++..+..+
T Consensus 32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~----~i~~~~~~~~~~~~~~~D~vid~~g~~~~~ 107 (168)
T d1uufa2 32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADE----VVNSRNADEMAAHLKSFDFILNTVAAPHNL 107 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSE----EEETTCHHHHHTTTTCEEEEEECCSSCCCH
T ss_pred CEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcE----EEECchhhHHHHhcCCCceeeeeeecchhH
Confidence 4699999999999999888889999999999999887766655421 222334444444445689999999877555
Q ss_pred HHHHHHHhhhcCCCCEEEecCCC-ChHHHHHHHHHHHHcCCeEEecc
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNE-WYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~-~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
... ...+.++-.++..+.. .+..... ...+-.+++.+.+..
T Consensus 108 ~~~----~~~l~~~G~iv~~G~~~~~~~~~~-~~~l~~k~~~i~Gs~ 149 (168)
T d1uufa2 108 DDF----TTLLKRDGTMTLVGAPATPHKSPE-VFNLIMKRRAIAGSM 149 (168)
T ss_dssp HHH----HTTEEEEEEEEECCCC-------C-HHHHHTTTCEEEECC
T ss_pred HHH----HHHHhcCCEEEEeccCCCCccccc-HHHHHHCCcEEEEEe
Confidence 544 3455555555555432 2222212 222334567766654
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=97.02 E-value=0.00095 Score=50.96 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=35.4
Q ss_pred CeEEEEcccHHHH-HHHHHHHhCCCcEEEEeCChh-HHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQ-NLALNIAEKGFPISVYNRTTS-KVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~-~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~ 46 (484)
|||=|||.|-+|. ++|+.|.++|+.|+++|+.+. .++.+.+.+
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~G 46 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLG 46 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCC
Confidence 6899999999995 899999999999999998874 445555443
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.01 E-value=0.0021 Score=54.22 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=62.8
Q ss_pred CC-CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEe--CChhHHHHHHHHhhhcCCC---CeeecCCHhHHHhh
Q 011501 1 MV-QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYN--RTTSKVDETVERAKQEGNL---PLYGFHDPESFVHS 66 (484)
Q Consensus 1 M~-~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~d--r~~~~~~~~~~~~~~~~~~---~~~~~~s~~e~~~~ 66 (484)
|+ ++||+|||+ |.+|.++|..|+..+. ...+++ ++.++.+............ .+..+.+..+..+.
T Consensus 1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (154)
T d1y7ta1 1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKD 80 (154)
T ss_dssp CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhccc
Confidence 65 359999996 9999999999997653 123343 4444444333221110000 24555666666666
Q ss_pred cCCCcEEEEecCCC----c-----------hHHHHHHHHhhhcCCCCEEEecCCCChHHHHH
Q 011501 67 IQKPRVIIMLVKAG----S-----------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTER 113 (484)
Q Consensus 67 l~~advIi~~vp~~----~-----------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~ 113 (484)
+|+||++--.+ . .++++...+..+.+++.+|+-.|| |-++.-
T Consensus 81 ---advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t 137 (154)
T d1y7ta1 81 ---ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNA 137 (154)
T ss_dssp ---CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred ---ccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHH
Confidence 99999986322 1 133334556666666677777776 445433
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.00 E-value=0.0017 Score=55.67 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=74.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhc-----CCCcEEEEec
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSI-----QKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l-----~~advIi~~v 77 (484)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+...- ......++.+..+.+ ..+|+||-|+
T Consensus 28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~--~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV--LQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE--EECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCccc--ccccccccccccccccccCCCCceEEEecc
Confidence 369999999999999999999998 79999999999887766553210 001123444433321 2479999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
..+. .++.....+++|-.++-.+........... .+-.+++.+.+.
T Consensus 106 G~~~----~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~-~~~~k~l~i~Gs 151 (171)
T d1pl8a2 106 GAEA----SIQAGIYATRSGGTLVLVGLGSEMTTVPLL-HAAIREVDIKGV 151 (171)
T ss_dssp CCHH----HHHHHHHHSCTTCEEEECSCCCSCCCCCHH-HHHHTTCEEEEC
T ss_pred CCch----hHHHHHHHhcCCCEEEEEecCCCCCccCHH-HHHHCCcEEEEE
Confidence 7653 344445556666666666554322222222 233456666643
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.96 E-value=0.0033 Score=52.23 Aligned_cols=96 Identities=11% Similarity=0.118 Sum_probs=57.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCCh--hHHH----HHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTT--SKVD----ETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~--~~~~----~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advI 73 (484)
.||+||| .|.+|..+|..|...+. ++.++|++. ++.+ ++....... .+.+ ...+.+++ .. +|+|
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~--~~~~i~~~~~~~~-~~---aDiV 74 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYD--SNTRVRQGGYEDT-AG---SDVV 74 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTT--CCCEEEECCGGGG-TT---CSEE
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccccc--CCceEeeCCHHHh-hh---cCEE
Confidence 4899999 69999999999999886 799999753 2222 222111100 0122 23455554 33 9999
Q ss_pred EEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 74 IMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 74 i~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++.-.+ .. ++++.+.+..+- ++.+++..||-
T Consensus 75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~-p~~i~ivvtNP 121 (142)
T d1o6za1 75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLTTSNP 121 (142)
T ss_dssp EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEECCSS
T ss_pred EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcC-CCceEEEecCh
Confidence 9975322 11 223334555444 56677777664
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.93 E-value=0.0015 Score=50.65 Aligned_cols=66 Identities=17% Similarity=0.275 Sum_probs=45.4
Q ss_pred CCeEEEEcccHHH-HHHHHHHHhCCCcEEEEeCChh-HHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGLAVMG-QNLALNIAEKGFPISVYNRTTS-KVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGlG~mG-~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.++|=|||.|-.| +++|+.|.+.||+|+++|+... .++.+.+.+. .+....+.+. +.. +|+||..-
T Consensus 8 ~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi-----~v~~g~~~~~-i~~---~d~vV~S~ 75 (96)
T d1p3da1 8 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGA-----KIYIGHAEEH-IEG---ASVVVVSS 75 (96)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTC-----EEEESCCGGG-GTT---CSEEEECT
T ss_pred CCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCC-----eEEECCcccc-CCC---CCEEEECC
Confidence 3689999999999 7889999999999999998743 4455555432 1332233332 343 78776653
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.90 E-value=0.0019 Score=52.66 Aligned_cols=113 Identities=12% Similarity=0.072 Sum_probs=69.1
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh--cCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS--IQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~--l~~advIi~~vp~~~~ 82 (484)
.|-|+|.|.+|..++..|. |++|.+.+.++++.+.+...+.. -+.+..+-.+..+. +++++.++++++++..
T Consensus 2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~----~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~ 75 (129)
T d2fy8a1 2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGAN----FVHGDPTRVSDLEKANVRGARAVIVNLESDSE 75 (129)
T ss_dssp CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCE----EEESCTTSHHHHHHTTCTTCSEEEECCSSHHH
T ss_pred EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCcc----ccccccCCHHHHHHhhhhcCcEEEEeccchhh
Confidence 4778999999999999984 67889999999998887665421 12233333455543 5679999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++..+...-+.-.+++-+.+. ... +.+...|+..+-.|
T Consensus 76 n~~~~~~~r~~~~~~~iia~~~~~--~~~----~~l~~~G~d~vi~p 116 (129)
T d2fy8a1 76 TIHCILGIRKIDESVRIIAEAERY--ENI----EQLRMAGADQVISP 116 (129)
T ss_dssp HHHHHHHHHHHCSSSCEEEECSSG--GGH----HHHHHHHCSEEECH
T ss_pred hHHHHHHHHHHCCCceEEEEEcCH--HHH----HHHHHCCCCEEECh
Confidence 333333333322333566655543 222 22334466555444
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.89 E-value=0.0024 Score=55.16 Aligned_cols=96 Identities=22% Similarity=0.224 Sum_probs=58.1
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
|+||||+|. |..|.-|.+.|.++-+ ++...-.+...-+.+........+.......+.+++.+. +|++|+|+|.+
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~---~dvvf~a~p~~ 77 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKN---CDVLFTALPAG 77 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHH---CSEEEECCSTT
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccc---cceEEEccccH
Confidence 469999985 9999999999998754 554442221111112111110000011223466677666 99999999998
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.. .+ +.+.. .+..|||.|+..
T Consensus 78 ~s-~~----~~~~~-~~~~VIDlSadf 98 (176)
T d1vkna1 78 AS-YD----LVREL-KGVKIIDLGADF 98 (176)
T ss_dssp HH-HH----HHTTC-CSCEEEESSSTT
T ss_pred HH-HH----HHHhh-ccceEEecCccc
Confidence 43 22 23333 678999999876
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=96.84 E-value=0.0028 Score=54.23 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=48.3
Q ss_pred CeEEEEcccHHHHHHH-HHHHh--C---CCcEEEEeCChhHHHHHHH---Hhh-hcC-CCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLA-LNIAE--K---GFPISVYNRTTSKVDETVE---RAK-QEG-NLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA-~~L~~--~---G~~V~v~dr~~~~~~~~~~---~~~-~~~-~~~~~~~~s~~e~~~~l~~adv 72 (484)
.||+|||.|..|.+.+ ..+.. . +-++.++|.++++++.... ... ..+ ..++...++..|.++. +|+
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~---AD~ 80 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTD---VDF 80 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSS---CSE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCC---CCE
Confidence 4899999999987643 22332 2 2389999999998763221 111 100 1245677788888887 999
Q ss_pred EEEecCC
Q 011501 73 IIMLVKA 79 (484)
Q Consensus 73 Ii~~vp~ 79 (484)
||++.-.
T Consensus 81 Vvitag~ 87 (167)
T d1u8xx1 81 VMAHIRV 87 (167)
T ss_dssp EEECCCT
T ss_pred EEECCCc
Confidence 9999854
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.82 E-value=0.0046 Score=52.92 Aligned_cols=100 Identities=10% Similarity=-0.006 Sum_probs=61.7
Q ss_pred CeEEEEcccHHHHH--HHHHHHhC----CCcEEEEeCChhH--HHHHHHHh---hhc--CCCCeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQN--LALNIAEK----GFPISVYNRTTSK--VDETVERA---KQE--GNLPLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~--lA~~L~~~----G~~V~v~dr~~~~--~~~~~~~~---~~~--~~~~~~~~~s~~e~~~~l~~a 70 (484)
+||.|||.|..|.+ ++..+... +-++..+|+++++ .+.+-... ... ...++..+++..+..+. +
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g---a 78 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG---A 78 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT---C
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC---C
Confidence 69999999987743 44444432 2389999998854 33222111 000 01235566777777776 9
Q ss_pred cEEEEecCCCch-----------------------------------HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 71 RVIIMLVKAGSP-----------------------------------VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 71 dvIi~~vp~~~~-----------------------------------v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|+|+++...+.. ++++++.+..+ .|+.+++..||--
T Consensus 79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~-~pda~~i~vtNPv 149 (169)
T d1s6ya1 79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEEL-CPDAWLINFTNPA 149 (169)
T ss_dssp SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECSSSH
T ss_pred CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhc-CCCeEEEEeCChH
Confidence 999999865421 34444555554 4788888888754
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.78 E-value=0.0012 Score=55.25 Aligned_cols=96 Identities=14% Similarity=0.158 Sum_probs=55.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
|+||||||+ |.+|+-|.+.|.++. | ++..+..+........ .... ........+..+ .+. +|++|+|+
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~-~~~~--~~~~~~~~~~~~-~~~---~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS-FGGT--TGTLQDAFDLEA-LKA---LDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG-GGTC--CCBCEETTCHHH-HHT---CSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc-ccCC--ceeeecccchhh-hhc---CcEEEEec
Confidence 358999986 999999998777653 3 4555655433211110 0000 001111223333 344 99999999
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
|.+ ........+... ..+.+|||.|+..
T Consensus 74 ~~~-~s~~~~~~~~~~-g~~~~VID~Ss~f 101 (146)
T d1t4ba1 74 GGD-YTNEIYPKLRES-GWQGYWIDAASSL 101 (146)
T ss_dssp CHH-HHHHHHHHHHHT-TCCCEEEECSSTT
T ss_pred Cch-HHHHhhHHHHhc-CCCeecccCCccc
Confidence 886 444444444432 2346899999875
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.69 E-value=0.003 Score=51.98 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=66.3
Q ss_pred CCeEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHH-------HHHHHHhhhcCCCCeeecCCHhHHHh
Q 011501 3 QTRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKV-------DETVERAKQEGNLPLYGFHDPESFVH 65 (484)
Q Consensus 3 ~~~IgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~-------~~~~~~~~~~~~~~~~~~~s~~e~~~ 65 (484)
..||+|+|+- .-...++..|.+.|++|.+||+.-+.. +.+....... +...+.++.++++
T Consensus 13 ~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 13 TRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHV---SSLLVSDLDEVVA 89 (136)
T ss_dssp CCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHH---HTTBCSCHHHHHH
T ss_pred CCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccc---cceeehhhhhhhh
Confidence 3689999974 567889999999999999999743221 1111110000 1345789999999
Q ss_pred hcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 66 SIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 66 ~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
. +|+||++++.+. ..+ +...+.++.+|+|+-+..+
T Consensus 90 ~---~D~ivi~t~h~~-f~~----l~~~~~~~~~I~D~~~~~~ 124 (136)
T d1mv8a3 90 S---SDVLVLGNGDEL-FVD----LVNKTPSGKKLVDLVGFMP 124 (136)
T ss_dssp H---CSEEEECSCCGG-GHH----HHHSCCTTCEEEESSSCCS
T ss_pred h---ceEEEEEeCCHH-HHH----HHHHhcCCCEEEECCCCCC
Confidence 8 999999999874 333 3445667899999988764
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.67 E-value=0.00056 Score=57.32 Aligned_cols=93 Identities=14% Similarity=0.080 Sum_probs=55.3
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
+|+|||||. |..|.-|.+.|.+++| ++.....+...-+.+.. ... .........+.... +|++|+++|
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~-~~~----~~~~~~~~~~~~~~---~d~vf~a~p 73 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGF-AES----SLRVGDVDSFDFSS---VGLAFFAAA 73 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEE-TTE----EEECEEGGGCCGGG---CSEEEECSC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceee-ccc----cchhccchhhhhcc---ceEEEecCC
Confidence 479999986 9999999999987665 56554333221111100 000 11111111222333 999999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
.+ ........+ ..+|.+|||.|+..
T Consensus 74 ~~-~s~~~~~~~---~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 74 AE-VSRAHAERA---RAAGCSVIDLSGAL 98 (144)
T ss_dssp HH-HHHHHHHHH---HHTTCEEEETTCTT
T ss_pred cc-hhhhhcccc---ccCCceEEeechhh
Confidence 76 334444343 45789999999875
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=96.67 E-value=0.0043 Score=53.26 Aligned_cols=37 Identities=11% Similarity=0.410 Sum_probs=28.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcE-EEEeCChhHH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPI-SVYNRTTSKV 39 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V-~v~dr~~~~~ 39 (484)
++||||.|.|++|+.+.+.+.+.. .+| .+.|+++...
T Consensus 2 ~irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~ 40 (172)
T d2czca2 2 KVKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE 40 (172)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH
T ss_pred cEEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH
Confidence 359999999999999999998754 454 4567776543
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.64 E-value=0.0047 Score=53.34 Aligned_cols=36 Identities=11% Similarity=0.224 Sum_probs=28.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-CcEEE-EeCChhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-FPISV-YNRTTSKV 39 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-~~V~v-~dr~~~~~ 39 (484)
-||||.|+|++|+.+++.+.++. ++|.. .|+++...
T Consensus 2 IKVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~ 39 (178)
T d1b7go1 2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE 39 (178)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH
T ss_pred eEEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHH
Confidence 48999999999999999999764 56655 46665543
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.61 E-value=0.0057 Score=49.77 Aligned_cols=95 Identities=15% Similarity=0.229 Sum_probs=61.4
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISV-YNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
|||+|+|+ |+||+.++..+.+.|+++.. +|++.. ..++.+|+||=-..+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~---------------------------~~~~~~DVvIDFS~p~- 52 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV---------------------------EELDSPDVVIDFSSPE- 52 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE---------------------------EECSCCSEEEECSCGG-
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH---------------------------HHhccCCEEEEecCHH-
Confidence 58999995 99999999999999998763 453311 1122389888765443
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGV 130 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv 130 (484)
.+.+.++.... .+.-+|-+||+...+..+..+.+. +.+..+-+|.
T Consensus 53 ~~~~~l~~~~~---~~~p~ViGTTG~~~~~~~~i~~~a-k~~pv~~a~N 97 (128)
T d1vm6a3 53 ALPKTVDLCKK---YRAGLVLGTTALKEEHLQMLRELS-KEVPVVQAYS 97 (128)
T ss_dssp GHHHHHHHHHH---HTCEEEECCCSCCHHHHHHHHHHT-TTSEEEECSC
T ss_pred HHHHHHHHHHh---cCCCEEEEcCCCCHHHHHHHHHHH-hhCCEEeeec
Confidence 56666655443 456678888887555555445443 3455555554
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.60 E-value=0.0066 Score=51.03 Aligned_cols=105 Identities=17% Similarity=0.144 Sum_probs=62.7
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChhH--HHHHHHHhhhcCC-C--CeeecCCHhHHHhhcCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTSK--VDETVERAKQEGN-L--PLYGFHDPESFVHSIQK 69 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~~--~~~~~~~~~~~~~-~--~~~~~~s~~e~~~~l~~ 69 (484)
++||+|||+ |.+|.++|..|+..+. ++..+|.+... .+.+......... . .+....+..+..+.
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKD--- 79 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTT---
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCC---
Confidence 469999995 9999999999986542 46778876543 3333221111100 0 24556677777776
Q ss_pred CcEEEEecCCCc---------------hHHHHHHHHhhhcCCCCEEEecCCCChHHHH
Q 011501 70 PRVIIMLVKAGS---------------PVDQTIKTLSVYMEKGDCIIDGGNEWYENTE 112 (484)
Q Consensus 70 advIi~~vp~~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~ 112 (484)
+|+||++-..+. .++++...+..+.++.-++|..|| |-++.
T Consensus 80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsN--PvD~m 135 (154)
T d5mdha1 80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN--PANTN 135 (154)
T ss_dssp CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHH
T ss_pred ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecC--cHHHH
Confidence 999999874321 233444556555544445666665 44443
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0026 Score=54.10 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=58.3
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+. +|.+++..|.+.|..|++++.... ++.+...+ +|+||.++..+..
T Consensus 38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~---------------------~l~~~~~~---ADivI~a~G~p~~ 93 (166)
T d1b0aa1 38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK---------------------NLRHHVEN---ADLLIVAVGKPGF 93 (166)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS---------------------CHHHHHHH---CSEEEECSCCTTC
T ss_pred ceEEEEeccccccHHHHHHHHHhhccccccccccc---------------------hhHHHHhh---hhHhhhhccCccc
Confidence 5799999877 999999999999999999975432 34455566 9999999987643
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..++++|.++||.+...
T Consensus 94 i~------~~~vk~g~vvIDvGi~~ 112 (166)
T d1b0aa1 94 IP------GDWIKEGAIVIDVGINR 112 (166)
T ss_dssp BC------TTTSCTTCEEEECCCEE
T ss_pred cc------ccccCCCcEEEecCcee
Confidence 32 24688999999998653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.55 E-value=0.001 Score=59.92 Aligned_cols=33 Identities=30% Similarity=0.541 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
+||.|||.|.+|.+.|..|+++|++|+++||+.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999999999999999999999999999863
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.52 E-value=0.0036 Score=53.85 Aligned_cols=94 Identities=14% Similarity=0.080 Sum_probs=58.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhc---CCCcEEEEecC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSI---QKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l---~~advIi~~vp 78 (484)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+... -+.. ..+..+.+.++ ...|+||-++.
T Consensus 29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~---~i~~~~~~~~~~v~~~t~g~G~D~vid~~g 105 (174)
T d1jqba2 29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATD---ILNYKNGHIEDQVMKLTNGKGVDRVIMAGG 105 (174)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSE---EECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred CEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccc---cccccchhHHHHHHHHhhccCcceEEEccC
Confidence 369999999999999988888896 7999999999987777655321 0000 11222322222 23677888876
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
.+..+++.+ ..++++..++..+
T Consensus 106 ~~~~~~~a~----~~~~~~G~iv~~G 127 (174)
T d1jqba2 106 GSETLSQAV----KMVKPGGIISNIN 127 (174)
T ss_dssp CTTHHHHHH----HHEEEEEEEEECC
T ss_pred CHHHHHHHH----HHHhcCCEEEEEe
Confidence 654334333 3344555555554
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.011 Score=50.75 Aligned_cols=43 Identities=12% Similarity=0.108 Sum_probs=36.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+.+.+.+
T Consensus 30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lG 73 (182)
T d1vj0a2 30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73 (182)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECCCccchhheeccccccccccccccccccccccccccc
Confidence 369999999999999988888997 7999999999887665543
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.47 E-value=0.0078 Score=47.61 Aligned_cols=88 Identities=14% Similarity=0.040 Sum_probs=54.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH-HHHHHHHhhhcCCCCeeec---CCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK-VDETVERAKQEGNLPLYGF---HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~-~~~~~~~~~~~~~~~~~~~---~s~~e~~~~l~~advIi~~vp~ 79 (484)
.+|.|||.|.+|..-++.|.+.|.+|++++..... ...+.+.+ +++.. .+.+++ +.+++|+.++.+
T Consensus 13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~------~i~~~~~~~~~~dl----~~~~lv~~at~d 82 (113)
T d1pjqa1 13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEG------MLTLVEGPFDETLL----DSCWLAIAATDD 82 (113)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTT------SCEEEESSCCGGGG----TTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcC------CceeeccCCCHHHh----CCCcEEeecCCC
Confidence 68999999999999999999999999999876643 22222221 12221 233332 238888888766
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
. .+..-+... .++..++|+...
T Consensus 83 ~-~~n~~i~~~---a~~~~ilVNv~D 104 (113)
T d1pjqa1 83 D-TVNQRVSDA---AESRRIFCNVVD 104 (113)
T ss_dssp H-HHHHHHHHH---HHHTTCEEEETT
T ss_pred H-HHHHHHHHH---HHHcCCEEEeCC
Confidence 5 444333222 223345666544
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.42 E-value=0.0014 Score=54.88 Aligned_cols=95 Identities=19% Similarity=0.201 Sum_probs=53.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCC-C---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKG-F---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G-~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp 78 (484)
||||||| .|..|.-+.+.|.++. | ++..+..+...- ........ ........+.+. .+. +|++|+|+|
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-k~~~~~~~--~~~~~~~~~~~~-~~~---~DvvF~alp 73 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-PAPNFGKD--AGMLHDAFDIES-LKQ---LDAVITCQG 73 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-BCCCSSSC--CCBCEETTCHHH-HTT---CSEEEECSC
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-cccccCCc--ceeeecccchhh-hcc---ccEEEEecC
Confidence 5899998 5999999998877643 3 444443332110 00000000 001111123222 333 999999999
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
++ ...++...+... ..+.+|||.|+..
T Consensus 74 ~~-~s~~~~~~l~~~-g~~~~VIDlSsdf 100 (147)
T d1mb4a1 74 GS-YTEKVYPALRQA-GWKGYWIDAASTL 100 (147)
T ss_dssp HH-HHHHHHHHHHHT-TCCSEEEESSSTT
T ss_pred ch-HHHHHhHHHHHc-CCceEEEeCCccc
Confidence 87 455555555442 2335899999876
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.38 E-value=0.0046 Score=52.88 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=58.8
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
++|.|||-+. +|.++|..|.+.|..|++++.... ++.+...+ +|++|.++..+..
T Consensus 40 k~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~---------------------~l~~~~~~---aDivi~a~G~~~~ 95 (170)
T d1a4ia1 40 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA---------------------HLDEEVNK---GDILVVATGQPEM 95 (170)
T ss_dssp CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS---------------------SHHHHHTT---CSEEEECCCCTTC
T ss_pred ceEEEEecCCccchHHHHHHHhccCceEEEecccc---------------------cHHHHHhh---ccchhhccccccc
Confidence 5799999866 899999999999999999986532 33344555 9999999988743
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
++ ..++++|.+|||.+....
T Consensus 96 i~------~~~vk~g~iviDvgi~~~ 115 (170)
T d1a4ia1 96 VK------GEWIKPGAIVIDCGINYV 115 (170)
T ss_dssp BC------GGGSCTTCEEEECCCBC-
T ss_pred cc------cccccCCCeEeccCcccc
Confidence 32 246889999999987653
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=96.37 E-value=0.0038 Score=53.97 Aligned_cols=99 Identities=13% Similarity=0.187 Sum_probs=57.0
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhC-CCcEE-EEeCC--h---hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEK-GFPIS-VYNRT--T---SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~-G~~V~-v~dr~--~---~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
|+||+||| .|..|.-|.+.|..| .+++. ++-++ . ++....................+...... ..|++|
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dvvf 77 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSA---DVDVVF 77 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCT---TCCEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhc---ccceee
Confidence 46999999 699999999999998 45664 33222 1 12222111110000001222233333333 389999
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCCh
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWY 108 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~ 108 (484)
+|+|++ ...+....+ ...+..|||.|...-
T Consensus 78 ~alp~~-~s~~~~~~~---~~~~~~vIDlSadfR 107 (179)
T d2g17a1 78 LATAHE-VSHDLAPQF---LQAGCVVFDLSGAFR 107 (179)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECSSTTS
T ss_pred ccccch-hHHHHhhhh---hhcCceeeccccccc
Confidence 999986 333333333 447889999998763
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.36 E-value=0.0087 Score=52.01 Aligned_cols=43 Identities=14% Similarity=0.200 Sum_probs=37.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
++|-|.| .|-+|..+|+.|++.|.+|++.+|++++.+++.+..
T Consensus 24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~ 67 (191)
T d1luaa1 24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSV 67 (191)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHH
Confidence 4677777 799999999999999999999999999987776543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.32 E-value=0.0013 Score=56.25 Aligned_cols=95 Identities=14% Similarity=0.228 Sum_probs=58.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhh-cCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHS-IQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~-l~~advIi~~vp~~~~ 82 (484)
.+|.|+|.|.+|...++.+...|.+|+++|+++++.+.+.+.+... +....+..+..+. ....|+++.++.....
T Consensus 29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~----~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~ 104 (168)
T d1piwa2 29 KKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADH----YIATLEEGDWGEKYFDTFDLIVVCASSLTD 104 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSE----EEEGGGTSCHHHHSCSCEEEEEECCSCSTT
T ss_pred CEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcE----EeeccchHHHHHhhhcccceEEEEecCCcc
Confidence 4799999999999988877788999999999999998877765421 1111122222222 2346888877655421
Q ss_pred HHHHHHHHhhhcCCCCEEEecC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~s 104 (484)
. .++.....+.++-.++..+
T Consensus 105 ~--~~~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 105 I--DFNIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp C--CTTTGGGGEEEEEEEEECC
T ss_pred c--hHHHHHHHhhccceEEEec
Confidence 1 1223334444544444444
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=96.31 E-value=0.01 Score=50.82 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=27.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCC-CcEE-EEeCChhH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKG-FPIS-VYNRTTSK 38 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G-~~V~-v~dr~~~~ 38 (484)
|.+|||-|.|++|+.+.+.+.+++ .+|. +.|+++..
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~ 38 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDF 38 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHH
Confidence 358999999999999999988776 4555 44666543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.20 E-value=0.0068 Score=55.30 Aligned_cols=84 Identities=15% Similarity=0.297 Sum_probs=55.9
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCC
Q 011501 4 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKA 79 (484)
Q Consensus 4 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 79 (484)
+||++| | .+-+|..+|+.|++.|++|.+.+|++++++++.++....+ .+++.+ =+.+
T Consensus 1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g-------------------~~~~~~~~Dv~~ 61 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG-------------------GHAVAVKVDVSD 61 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTS
T ss_pred CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeeCCC
Confidence 478777 4 5669999999999999999999999998877765432210 122222 2234
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++++.+++.+.....+=+++|+....
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAG~ 88 (255)
T d1gega_ 62 RDQVFAAVEQARKTLGGFDVIVNNAGV 88 (255)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHhCCccEEEecccc
Confidence 445666666666655455677765443
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0086 Score=54.34 Aligned_cols=84 Identities=13% Similarity=0.176 Sum_probs=58.4
Q ss_pred eEEEE-cc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE--EEecCCC
Q 011501 5 RIGLA-GL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI--IMLVKAG 80 (484)
Q Consensus 5 ~IgiI-Gl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI--i~~vp~~ 80 (484)
|+.+| |. +-+|..+|..|+++|++|.++||++++++++.++.... . .++. ..=+.+.
T Consensus 8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----------------~---~~~~~~~~Dvs~~ 68 (244)
T d1yb1a_ 8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------------G---AKVHTFVVDCSNR 68 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEeeCCCH
Confidence 45566 55 55999999999999999999999999988876643211 0 2332 3333444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.++.+++.+.....+=+++|++....
T Consensus 69 ~~v~~~~~~i~~~~g~idilinnag~~ 95 (244)
T d1yb1a_ 69 EDIYSSAKKVKAEIGDVSILVNNAGVV 95 (244)
T ss_dssp HHHHHHHHHHHHHTCCCSEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCCceeEeecccc
Confidence 566677777776666668888876553
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.05 E-value=0.0085 Score=54.66 Aligned_cols=81 Identities=12% Similarity=0.227 Sum_probs=54.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
||++| |.+-+|.++|+.|+++|++|.+++|+++++++..++....+ .++..+ =+.+.
T Consensus 3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g-------------------~~~~~~~~Dvs~~ 63 (257)
T d2rhca1 3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG-------------------VEADGRTCDVRSV 63 (257)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEeecCCH
Confidence 68777 55779999999999999999999999998887765432210 122222 22344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
+.++.+++.+.....+=+++|+..
T Consensus 64 ~~v~~~~~~~~~~~g~iDilVnnA 87 (257)
T d2rhca1 64 PEIEALVAAVVERYGPVDVLVNNA 87 (257)
T ss_dssp HHHHHHHHHHHHHTCSCSEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecc
Confidence 566666666666554456777654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.016 Score=52.33 Aligned_cols=81 Identities=11% Similarity=0.249 Sum_probs=55.0
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... . ...+..=+.+.++
T Consensus 5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 64 (243)
T d1q7ba_ 5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA-----------------N---GKGLMLNVTDPAS 64 (243)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC-----------------C---CcEEEEEecCHHH
Confidence 56666 5 57799999999999999999999999988877654321 0 1112222344456
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++++++.+.....+=+++|+...
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAg 87 (243)
T d1q7ba_ 65 IESVLEKIRAEFGEVDILVNNAG 87 (243)
T ss_dssp HHHHHHHHHHHTCSCSEEEECCC
T ss_pred hhhhhhhhhcccCCcceehhhhh
Confidence 67777777665555567776543
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=95.87 E-value=0.053 Score=46.26 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=63.1
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-------cEEEEeCChh--HHHHHHHHhhhcCCC---CeeecCCHhHHHhhcCCCc
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-------PISVYNRTTS--KVDETVERAKQEGNL---PLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-------~V~v~dr~~~--~~~~~~~~~~~~~~~---~~~~~~s~~e~~~~l~~ad 71 (484)
||.|+|+ |.+|.+++..|+.... .+.++|.+.. .++.+.-+....... .+..+++..+..+. +|
T Consensus 26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~---aD 102 (175)
T d7mdha1 26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFED---VD 102 (175)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTT---CS
T ss_pred EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccC---Cc
Confidence 7999996 9999999999997432 5667777653 233332211110000 24556677777766 99
Q ss_pred EEEEecCCC----ch-----------HHHHHHHHhhhcCCCCEEEecCCCChHHHHH
Q 011501 72 VIIMLVKAG----SP-----------VDQTIKTLSVYMEKGDCIIDGGNEWYENTER 113 (484)
Q Consensus 72 vIi~~vp~~----~~-----------v~~vl~~l~~~l~~g~iiId~st~~~~~~~~ 113 (484)
+||++-..+ .. ++++.+.+..+.+++.+|+-.|| |-++..
T Consensus 103 vVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t 157 (175)
T d7mdha1 103 WALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNA 157 (175)
T ss_dssp EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred eEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHH
Confidence 999986322 11 33344566666666676777776 455544
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=95.84 E-value=0.0094 Score=54.22 Aligned_cols=82 Identities=17% Similarity=0.214 Sum_probs=55.4
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCC
Q 011501 4 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKA 79 (484)
Q Consensus 4 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~ 79 (484)
-||++| | .+-+|..+|+.|+++|++|.+++|++++++++.++....+ .++..+ =+.+
T Consensus 10 nKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g-------------------~~~~~~~~Dvt~ 70 (251)
T d2c07a1 10 NKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG-------------------YESSGYAGDVSK 70 (251)
T ss_dssp SCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT-------------------CCEEEEECCTTC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC-------------------CcEEEEEccCCC
Confidence 367777 5 5779999999999999999999999998877765432110 122222 2234
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
.++++.+++++.....+=+++|+..
T Consensus 71 ~~~v~~~~~~~~~~~g~iDilvnna 95 (251)
T d2c07a1 71 KEEISEVINKILTEHKNVDILVNNA 95 (251)
T ss_dssp HHHHHHHHHHHHHHCSCCCEEEECC
T ss_pred HHHHHHHHHHHHHhcCCceeeeecc
Confidence 4566677777666555556777653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.016 Score=52.45 Aligned_cols=82 Identities=10% Similarity=0.128 Sum_probs=56.0
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++.+++.++... . +..+-.=+.+.++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 66 (244)
T d1nffa_ 7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD-----------------A---ARYVHLDVTQPAQ 66 (244)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC-----------------c---ceEEEeecCCHHH
Confidence 56666 5 47799999999999999999999999988777654321 1 1111111344456
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++++++.....+=+++|+....
T Consensus 67 v~~~~~~~~~~~g~idilinnAG~ 90 (244)
T d1nffa_ 67 WKAAVDTAVTAFGGLHVLVNNAGI 90 (244)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHhCCCeEEEECCcc
Confidence 777777777655556788876554
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=95.81 E-value=0.0035 Score=56.65 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=32.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+||.|||.|.-|..+|..|+++|++|++++++++
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 46899999999999999999999999999998754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.76 E-value=0.0063 Score=51.49 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=37.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|.+|++.|+++++.+.+.+.+
T Consensus 29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~G 71 (166)
T d1llua2 29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLG 71 (166)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccC
Confidence 4699999999999999888889999999999999987766544
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=95.76 E-value=0.0035 Score=57.03 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=31.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|+|.|||.|.-|...|..|+++|++|+++++++
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 589999999999999999999999999999874
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0046 Score=53.47 Aligned_cols=35 Identities=17% Similarity=0.489 Sum_probs=32.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.++|+|||.|..|..-|..|+++||+|++|++++.
T Consensus 43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence 36899999999999999999999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.64 E-value=0.038 Score=47.08 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=38.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~ 47 (484)
.|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.+.
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA 75 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA 75 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence 59999999999999999999995 79999999999987777654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=95.64 E-value=0.022 Score=51.92 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=53.9
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+++| | .+-+|..+|+.|++.|++|.+.+|++++++++.++.... . .++..+. +.+.
T Consensus 9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 69 (259)
T d2ae2a_ 9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK----------------G---FKVEASVCDLSSR 69 (259)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------T---CEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CCceEEEeeCCCH
Confidence 55555 5 467999999999999999999999999888776543221 0 1222222 2344
Q ss_pred chHHHHHHHHhhhcC-CCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYME-KGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~-~g~iiId~st 105 (484)
+.++.+++++..... +=+++|+...
T Consensus 70 ~~v~~~~~~~~~~~~~~idilvnnAG 95 (259)
T d2ae2a_ 70 SERQELMNTVANHFHGKLNILVNNAG 95 (259)
T ss_dssp HHHHHHHHHHHHHTTTCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCceEEEECCc
Confidence 456666666665543 3477777644
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.63 E-value=0.018 Score=52.27 Aligned_cols=80 Identities=11% Similarity=0.199 Sum_probs=53.9
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++..+ +..+..=+.+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~---------------------~~~~~~Dvs~~~~ 65 (250)
T d1ydea1 7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPG---------------------AVFILCDVTQEDD 65 (250)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT---------------------EEEEECCTTSHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC---------------------CeEEEccCCCHHH
Confidence 45555 5 57899999999999999999999999888777654321 1111112334456
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAG 88 (250)
T d1ydea1 66 VKTLVSETIRRFGRLDCVVNNAG 88 (250)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHhcCCCCEEEeccc
Confidence 67777766665545577777654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=95.60 E-value=0.022 Score=51.83 Aligned_cols=118 Identities=12% Similarity=-0.010 Sum_probs=78.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|-=+|+|. | .++..+++.|.+|+++|.++..++.+++..... +...+ ...+..+.... ...|+|+..+... .
T Consensus 122 ~~VLDiGcGs-G-~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~~~~-~~fD~V~ani~~~-~ 196 (254)
T d2nxca1 122 DKVLDLGTGS-G-VLAIAAEKLGGKALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAALPF-GPFDLLVANLYAE-L 196 (254)
T ss_dssp CEEEEETCTT-S-HHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHHGGG-CCEEEEEEECCHH-H
T ss_pred CEEEEcccch-h-HHHHHHHhcCCEEEEEECChHHHHHHHHHHHHc-CCceeEEeccccccccc-cccchhhhccccc-c
Confidence 4677899997 4 355667888999999999999888776543322 12222 34455554432 3579988766443 5
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
..++++.+...++||-.++- |.........+.+.+.+.|+..+.
T Consensus 197 l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 197 HAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp HHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 67777888888888766653 223334556677778888887654
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=95.57 E-value=0.018 Score=52.51 Aligned_cols=84 Identities=14% Similarity=0.207 Sum_probs=54.7
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++....+ .. ...+..=+.+.+++
T Consensus 8 ~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--------------~~---~~~~~~D~s~~~~~ 70 (258)
T d1ae1a_ 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--------------LN---VEGSVCDLLSRTER 70 (258)
T ss_dssp EEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------CC---EEEEECCTTCHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------CC---ceEEEeecCCHHHH
Confidence 455566 6789999999999999999999999988877665443210 00 11222233444566
Q ss_pred HHHHHHHhhhc-CCCCEEEecCC
Q 011501 84 DQTIKTLSVYM-EKGDCIIDGGN 105 (484)
Q Consensus 84 ~~vl~~l~~~l-~~g~iiId~st 105 (484)
+++++++.... .+-+++|++..
T Consensus 71 ~~~~~~~~~~~~g~idilinnag 93 (258)
T d1ae1a_ 71 DKLMQTVAHVFDGKLNILVNNAG 93 (258)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCC
T ss_pred HHHHHHHHHHhCCCcEEEecccc
Confidence 66666666654 24567776543
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.57 E-value=0.034 Score=50.46 Aligned_cols=84 Identities=15% Similarity=0.236 Sum_probs=55.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.+| |.+-+|.++|+.|++.|++|.+++|++++++++.++....+ . ..+++.+. +.+.
T Consensus 11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~--------------~---~~~~~~~~~Dls~~ 73 (257)
T d1xg5a_ 11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG--------------Y---PGTLIPYRCDLSNE 73 (257)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--------------C---SSEEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--------------C---CceEEEEEccCCCH
Confidence 56665 56779999999999999999999999999888776543210 0 02233222 3444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|++..
T Consensus 74 ~~v~~~v~~~~~~~g~iD~lVnnAg 98 (257)
T d1xg5a_ 74 EDILSMFSAIRSQHSGVDICINNAG 98 (257)
T ss_dssp HHHHHHHHHHHHHHCCCSEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEeccc
Confidence 5566666666655444466776543
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.55 E-value=0.027 Score=50.69 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=53.2
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .+-+|..+|+.|++.|++|.+.+|++++++++.+... . ..+..=+.+.+.
T Consensus 6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~------~----------------~~~~~Dv~~~~~ 63 (242)
T d1ulsa_ 6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVG------A----------------HPVVMDVADPAS 63 (242)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT------C----------------EEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC------C----------------eEEEEecCCHHH
Confidence 55555 5 5679999999999999999999999988777655321 1 111112334455
Q ss_pred HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++.+++++.....+=+++|+....
T Consensus 64 v~~~~~~~~~~~g~iDilVnnAG~ 87 (242)
T d1ulsa_ 64 VERGFAEALAHLGRLDGVVHYAGI 87 (242)
T ss_dssp HHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHhcCCceEEEECCcc
Confidence 666666666655445677776443
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.54 E-value=0.0066 Score=48.09 Aligned_cols=35 Identities=23% Similarity=0.397 Sum_probs=32.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
+||||||.|..|.-|+....+.|++|.++|++++.
T Consensus 12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~ 46 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA 46 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence 58999999999999999999999999999998653
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.028 Score=52.31 Aligned_cols=88 Identities=14% Similarity=0.293 Sum_probs=57.6
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec--CCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV--KAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v--p~~ 80 (484)
|+++| | .+-+|.++|+.|++.|++|.+.+|++++.++..++.... ..+. ...+++.+.+ .+.
T Consensus 13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~----------~~~~----~~~~~~~~~~Dvs~~ 78 (297)
T d1yxma1 13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQAN----------LPPT----KQARVIPIQCNIRNE 78 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------SCTT----CCCCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh----------hccc----cCceEEEEeccCCCH
Confidence 55666 4 567999999999999999999999999887766543211 0000 0134444433 344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++.+++.+.....+=+++|+....
T Consensus 79 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 79 EEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 56667777776655566788876443
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.47 E-value=0.02 Score=51.68 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEe-CC----------hhHHHHHH--------HHhhhcCCCCeeecCCHhHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYN-RT----------TSKVDETV--------ERAKQEGNLPLYGFHDPESFV 64 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d-r~----------~~~~~~~~--------~~~~~~~~~~~~~~~s~~e~~ 64 (484)
++|.|=|+|++|..+|+.|.+.|.+|+.++ .+ .+.+.+.. +..... .+.....+.+++.
T Consensus 32 ~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~ 109 (242)
T d1v9la1 32 KTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK--DNAEFVKNPDAIF 109 (242)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT--SCCCCCSSTTGGG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc--cCceEeeCcchhc
Confidence 589999999999999999999999887553 22 22222111 000000 0123334556665
Q ss_pred hhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 65 HSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 65 ~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
.. .||+++-|-..+.-.. +..+.+ +-++|+...|... +.+..+.+.++|+.|+..
T Consensus 110 ~~--~~DIliPcA~~~~I~~----~~a~~i-~ak~IvegAN~p~--t~~a~~~L~~rgI~~~PD 164 (242)
T d1v9la1 110 KL--DVDIFVPAAIENVIRG----DNAGLV-KARLVVEGANGPT--TPEAERILYERGVVVVPD 164 (242)
T ss_dssp GC--CCSEEEECSCSSCBCT----TTTTTC-CCSEEECCSSSCB--CHHHHHHHHTTTCEEECH
T ss_pred cc--cccEEeecchhccccH----HHHHhc-ccCEEEecCCCCC--ChhHHHHHHhCCeEEeCc
Confidence 53 4999999876553222 223334 3478888888763 444567888999988754
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=95.43 E-value=0.018 Score=52.52 Aligned_cols=82 Identities=17% Similarity=0.273 Sum_probs=54.8
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.||++++++++.++.... . .++..+. +.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~----------------g---~~~~~~~~Dv~~~ 66 (260)
T d1zema1 6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK----------------G---VEARSYVCDVTSE 66 (260)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT----------------T---SCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------C---CcEEEEEccCCCH
Confidence 45555 5 466999999999999999999999998887766543211 0 2232222 3444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++++++.+.....+=+++|+...
T Consensus 67 ~~v~~~~~~~~~~~g~iDilVnnaG 91 (260)
T d1zema1 67 EAVIGTVDSVVRDFGKIDFLFNNAG 91 (260)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCeehhhhc
Confidence 5667777776665555567776543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0046 Score=45.61 Aligned_cols=35 Identities=11% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+++|||||.|..|.-|+..-.+-|++|.++|.+++
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 36899999999999999999999999999998754
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.42 E-value=0.017 Score=52.16 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=35.0
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
++-|.| .+-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~ 51 (244)
T d1pr9a_ 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC 51 (244)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc
Confidence 444445 577999999999999999999999999888877654
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=95.39 E-value=0.027 Score=51.75 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=54.0
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... . +..+..=+.+.+.
T Consensus 6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~-----------------~---~~~~~~Dv~~~~~ 65 (276)
T d1bdba_ 6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGD-----------------N---VLGIVGDVRSLED 65 (276)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----------------G---EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------------C---eeEEecccccHHH
Confidence 45555 5 57899999999999999999999999888776553211 1 1222222344445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++..++.+.....+=+++|+...
T Consensus 66 ~~~~~~~~~~~~g~idilvnnAG 88 (276)
T d1bdba_ 66 QKQAASRCVARFGKIDTLIPNAG 88 (276)
T ss_dssp HHHHHHHHHHHHSCCCEEECCCC
T ss_pred HHHHHHHHHHHhCCccccccccc
Confidence 66666666665555577776543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.39 E-value=0.0068 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.383 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 37 (484)
+||.|||.|..|...|..|+++|+ +|+++++++.
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 689999999999999999999999 5999998864
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=95.38 E-value=0.033 Score=51.41 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=35.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
|+.|| |.|-+|.++|+.|++.|++|++.+|+.++.++..++
T Consensus 26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~ 68 (294)
T d1w6ua_ 26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ 68 (294)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 67777 689999999999999999999999999887766543
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.048 Score=43.02 Aligned_cols=111 Identities=14% Similarity=0.058 Sum_probs=85.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.||-|-|. |.-|+-.+..+.+.|-+|. +++....- .. ..++..+++.+|+++.. .+|.-++-||++.
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~yGT~vVaGVtPgkgG--------~~--~~giPVf~sV~eAv~~~-~~~~SvIfVPp~~ 75 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGG--------TT--HLGLPVFNTVREAVAAT-GATASVIYVPAPF 75 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT--------EE--ETTEEEESSHHHHHHHH-CCCEEEECCCGGG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEEEEccCCCC--------cc--cCCCchhhHHHHHHHHh-CCCeEEEeccHHH
Confidence 57999997 9999999999999998754 45543210 00 11478899999998874 4899999999998
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+.+++.+...+ ..+++-+-..++.++.++.+.+++++..+++
T Consensus 76 a~dA~~EAi~agI--~~iV~ITEgIP~~D~~~i~~~~~~~~~~liG 119 (119)
T d2nu7a1 76 CKDSILEAIDAGI--KLIITITEGIPTLDMLTVKVKLDEAGVRMIG 119 (119)
T ss_dssp HHHHHHHHHHTTC--SEEEECCCCCCHHHHHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHCCC--CEEEEecCCCCHHHHHHHHHHHhhCCCEEeC
Confidence 8888888886655 3577777888888999988888888887763
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.36 E-value=0.02 Score=52.09 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=54.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ .+++.+. +.+.
T Consensus 12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g-------------------~~~~~~~~Dvs~~ 72 (255)
T d1fmca_ 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG-------------------GQAFACRCDITSE 72 (255)
T ss_dssp CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT-------------------CCEEEEECCTTCH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------------------CcEEEEEccCCCH
Confidence 67777 56789999999999999999999999998877765432210 2222222 2333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|+...
T Consensus 73 ~~~~~~~~~~~~~~g~iDilvnnAG 97 (255)
T d1fmca_ 73 QELSALADFAISKLGKVDILVNNAG 97 (255)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCC
T ss_pred HHHHHHHHHHHHHcCCCCEeeeCCc
Confidence 4556666666655545567776544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=95.34 E-value=0.028 Score=51.07 Aligned_cols=80 Identities=10% Similarity=0.092 Sum_probs=51.1
Q ss_pred EEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHH
Q 011501 6 IGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVD 84 (484)
Q Consensus 6 IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~ 84 (484)
+-|.| .+-+|.++|+.|++.|++|.+.+|++++.+++.++... . +..+..=+.+.+.++
T Consensus 8 alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~Dv~~~~~v~ 67 (254)
T d1hdca_ 8 VIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGD-----------------A---ARYQHLDVTIEEDWQ 67 (254)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGG-----------------G---EEEEECCTTCHHHHH
T ss_pred EEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------c---eEEEEcccCCHHHHH
Confidence 44445 46699999999999999999999999887776553211 1 111222233444566
Q ss_pred HHHHHHhhhcCCCCEEEecCC
Q 011501 85 QTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 85 ~vl~~l~~~l~~g~iiId~st 105 (484)
++++.+.....+=+++|+...
T Consensus 68 ~~~~~~~~~~g~iDilVnnAg 88 (254)
T d1hdca_ 68 RVVAYAREEFGSVDGLVNNAG 88 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCccEEEecCc
Confidence 666666554444466666543
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.037 Score=43.80 Aligned_cols=111 Identities=15% Similarity=0.117 Sum_probs=85.1
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.||-|-|. |..|+--+..+.+.|-+|. ++++... +.. -.++..+++.+|++++. .+|.-++.||+..
T Consensus 8 trVivQGiTG~~G~~ht~~m~~yGT~iVaGVtPgkg--------G~~--~~giPVf~tV~eAv~~~-~~d~SvIfVPp~~ 76 (121)
T d1oi7a1 8 TRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKG--------GME--VLGVPVYDTVKEAVAHH-EVDASIIFVPAPA 76 (121)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCT--------TCE--ETTEEEESSHHHHHHHS-CCSEEEECCCHHH
T ss_pred CcEEEEcCCCcHHHHHHHHHHHhCCceEeeeecCCC--------CcE--EECCchHhhHHHHHHhc-CCeEEEEeeCHHH
Confidence 48989997 9999999999999887654 4443321 000 11478899999999874 6999999999987
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
+.+.+++.+...+ ..+++-+-..++.++.++.+.+++++..+++
T Consensus 77 a~dAi~EAi~agI--~liv~ITEgVPv~Dm~~i~~~~~~~~~~liG 120 (121)
T d1oi7a1 77 AADAALEAAHAGI--PLIVLITEGIPTLDMVRAVEEIKALGSRLIG 120 (121)
T ss_dssp HHHHHHHHHHTTC--SEEEECCSCCCHHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHHhCCC--cEEEEecCCCCHHHHHHHHHHHHhCCCEEeC
Confidence 7778878776655 3567777788888888888888888887765
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=95.25 E-value=0.031 Score=50.63 Aligned_cols=82 Identities=7% Similarity=0.149 Sum_probs=55.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| |.+-+|.++|+.|++.|++|.+.+|++++.+++.+.... . .++..+ =+.+.
T Consensus 7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----------------~---~~~~~~~~Dv~~~ 66 (251)
T d1zk4a1 7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----------------P---DQIQFFQHDSSDE 66 (251)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----------------T---TTEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------------C---CcEEEEEccCCCH
Confidence 56666 467799999999999999999999999887776653210 0 122222 23444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
++++.+++.+.....+=+++|+....
T Consensus 67 ~~v~~~~~~~~~~~G~iDiLVnnAg~ 92 (251)
T d1zk4a1 67 DGWTKLFDATEKAFGPVSTLVNNAGI 92 (251)
T ss_dssp HHHHHHHHHHHHHHSSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCceEEEecccc
Confidence 56677777776655555777776543
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=95.22 E-value=0.025 Score=51.33 Aligned_cols=80 Identities=8% Similarity=0.157 Sum_probs=53.9
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.+|++++++++.++... +.+++ =+.+.
T Consensus 7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~Dv~~~ 64 (253)
T d1hxha_ 7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE----------------------RSMFVRHDVSSE 64 (253)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT----------------------TEEEECCCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----------------------CeEEEEeecCCH
Confidence 56666 4 56799999999999999999999999888777654321 11111 12333
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
..++.+++.+.....+=+++|+....
T Consensus 65 ~~~~~~~~~~~~~~g~iDilVnnAG~ 90 (253)
T d1hxha_ 65 ADWTLVMAAVQRRLGTLNVLVNNAGI 90 (253)
T ss_dssp HHHHHHHHHHHHHHCSCCEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCeEEecccc
Confidence 45666666666655555777776543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.22 E-value=0.0078 Score=51.47 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=36.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFP-ISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~-V~v~dr~~~~~~~~~~~~~ 47 (484)
.+|.|+|+|.+|...++.+...|.. |.+.|+++++.+.+.+.+.
T Consensus 30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga 74 (174)
T d1f8fa2 30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 74 (174)
T ss_dssp CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred CEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC
Confidence 3699999999999999988888875 5677999998887776553
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.21 E-value=0.029 Score=50.91 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=52.9
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.|| | .+-+|.++|+.|++.|++|.+.+|+.++++++.++... + +..+..=+.+.++
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~----~----------------~~~~~~Dvt~~~~ 65 (256)
T d1k2wa_ 6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGP----A----------------ACAIALDVTDQAS 65 (256)
T ss_dssp EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT----T----------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC----c----------------eEEEEeeCCCHHH
Confidence 56665 4 57899999999999999999999999888777654321 0 1111111234445
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++++.....+=+++|+...
T Consensus 66 v~~~~~~~~~~~g~iDilVnnAg 88 (256)
T d1k2wa_ 66 IDRCVAELLDRWGSIDILVNNAA 88 (256)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHhCCccEEEeecc
Confidence 66666666655444566766544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.16 E-value=0.014 Score=49.61 Aligned_cols=92 Identities=8% Similarity=0.092 Sum_probs=60.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
.+|.|.|. |.+|....+.+...|.+|++.++++++.+.+.+.+... +.-..+..+.......+|+||-++.+ .
T Consensus 29 ~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~----~i~~~~~~~~~~~~~g~D~v~d~~G~--~ 102 (171)
T d1iz0a2 29 EKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEE----AATYAEVPERAKAWGGLDLVLEVRGK--E 102 (171)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSE----EEEGGGHHHHHHHTTSEEEEEECSCT--T
T ss_pred CEEEEEeccccchhhhhhhhcccccccccccccccccccccccccce----eeehhhhhhhhhccccccccccccch--h
Confidence 36888895 99999998888888999999999999888777655421 22222333333444568999887752 3
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
+. .....+.++-.++..+.
T Consensus 103 ~~----~~~~~l~~~G~~v~~G~ 121 (171)
T d1iz0a2 103 VE----ESLGLLAHGGRLVYIGA 121 (171)
T ss_dssp HH----HHHTTEEEEEEEEEC--
T ss_pred HH----HHHHHHhcCCcEEEEeC
Confidence 33 34455666666666543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.15 E-value=0.052 Score=46.10 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=37.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~ 47 (484)
.+|.|+|+|.+|...++.+...|. +|++.|+++++.+...+.+.
T Consensus 29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa 73 (174)
T d1p0fa2 29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 73 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence 369999999999999999998886 79999999999887776553
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=95.15 E-value=0.022 Score=51.94 Aligned_cols=86 Identities=16% Similarity=0.257 Sum_probs=58.6
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+++| |.+-+|.++|+.|++.|++|.+.+|+.++++++.++....+ . + . .++..+ =+.+.
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~------~-~------~---~~~~~~~~Dvt~~ 69 (264)
T d1spxa_ 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAG------V-S------E---QNVNSVVADVTTD 69 (264)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------C-C------G---GGEEEEECCTTSH
T ss_pred CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-C------c---CceEEEEccCCCH
Confidence 67777 56889999999999999999999999998887766543210 0 0 0 123222 23444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++.+.....+=+++|++...
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG~ 95 (264)
T d1spxa_ 70 AGQDEILSTTLGKFGKLDILVNNAGA 95 (264)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC-
T ss_pred HHHHHHHHHHHHHhCCCCEeeccccc
Confidence 56777777777665566788887554
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=95.14 E-value=0.036 Score=50.15 Aligned_cols=84 Identities=18% Similarity=0.291 Sum_probs=53.8
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++..+. . . .+++.+ =+.+.
T Consensus 6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------------~-g---~~~~~~~~Dv~~~ 67 (251)
T d1vl8a_ 6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEK--------------Y-G---VETMAFRCDVSNY 67 (251)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------H-C---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--------------h-C---CcEEEEEccCCCH
Confidence 45555 5 567999999999999999999999998877655432110 0 0 223222 22344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++.+++++.....+=+++|+....
T Consensus 68 ~~v~~~~~~~~~~~g~iDiLVnnAG~ 93 (251)
T d1vl8a_ 68 EEVKKLLEAVKEKFGKLDTVVNAAGI 93 (251)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 56666666666655455777776443
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.13 E-value=0.0067 Score=55.77 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=32.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
+.+|.|||.|..|..+|..|+++|++|.+++++++.
T Consensus 2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~ 37 (292)
T d1k0ia1 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD 37 (292)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 347999999999999999999999999999998753
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.13 E-value=0.16 Score=41.08 Aligned_cols=99 Identities=14% Similarity=0.139 Sum_probs=60.1
Q ss_pred eEEEEc-ccHHHHHHHHHHHh-CCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAE-KGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~-~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
||+|+| .|+||+.++..+.+ .++++. .+|+.. ++..... ..+|+||=-..+.
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~----------------------~~~~~~~--~~~DvvIDFS~p~- 55 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD----------------------PLSLLTD--GNTEVVIDFTHPD- 55 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC----------------------CTHHHHT--TTCSEEEECCCTT-
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC----------------------chhhhcc--ccCCEEEEcccHH-
Confidence 799999 69999999988765 456654 456432 1111221 1389988776544
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHH-HHHHH-HHcCCeEEeccCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTER-RQKAV-AELGLLYLGMGVS 131 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~-~~~~l-~~~g~~~i~~pv~ 131 (484)
.+.+.++.... .|.-+|-.||+....-.+ +.+.+ ..+.+..+-+|-+
T Consensus 56 ~~~~~~~~~~~---~~~~~ViGTTG~~~~~~~~l~~~~~~~~~ipil~apNf 104 (135)
T d1yl7a1 56 VVMGNLEFLID---NGIHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 104 (135)
T ss_dssp THHHHHHHHHH---TTCEEEECCCCCCHHHHHHHHHHHHSCTTCEEEECSCC
T ss_pred HHHHHHHHHHh---cCCCEEEeccccchhHHHHHHHHHHhcCCCCEEEcCCc
Confidence 56666655543 566677788877544333 33322 3456766666643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.08 E-value=0.0023 Score=52.08 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=47.5
Q ss_pred eEEEEcccHHHHHHHHHHH-hCCCcEEE-EeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIA-EKGFPISV-YNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~-~~G~~V~v-~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|.|+|+|.+|..++..+. +.||++.+ +|-++++...... +.++...+.++++... ..+++++++|.. .
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~------Gi~V~~~~~l~~~~~~--~i~iai~~i~~~-~ 75 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVR------GGVIEHVDLLPQRVPG--RIEIALLTVPRE-A 75 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEET------TEEEEEGGGHHHHSTT--TCCEEEECSCHH-H
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEEC------CEEEecHHHHHHHHhh--cccEEEEeCCHH-H
Confidence 7999999999999998765 35777665 5888766322111 1123223344444432 366777777654 4
Q ss_pred HHHHHHHHhh
Q 011501 83 VDQTIKTLSV 92 (484)
Q Consensus 83 v~~vl~~l~~ 92 (484)
.+++++.+..
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.07 E-value=0.033 Score=51.42 Aligned_cols=115 Identities=11% Similarity=0.079 Sum_probs=70.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEe-----------CChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYN-----------RTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRV 72 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d-----------r~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~adv 72 (484)
++|.|=|.|++|...|+.|.+.|.+|+.++ .+.+.+.+.........++.-. ..+..++... .||+
T Consensus 37 ktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~DI 113 (293)
T d1hwxa1 37 KTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKA-KIYEGSILEV--DCDI 113 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTS-CBCCSCGGGC--CCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeeccccc-ccCCcccccC--CccE
Confidence 579999999999999999999999887553 3444554444322110000000 1122344432 4999
Q ss_pred EEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 73 IIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 73 Ii~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
++-|-..+.-.. +.++.+ .-++|+...|.+ .+.+..+.|.++|+.|+..
T Consensus 114 liPaA~~~~I~~----~~a~~l-~ak~I~EgAN~P--~t~eA~~~L~~~gI~viPD 162 (293)
T d1hwxa1 114 LIPAASEKQLTK----SNAPRV-KAKIIAEGANGP--TTPQADKIFLERNIMVIPD 162 (293)
T ss_dssp EEECSSSSCBCT----TTGGGC-CCSEEECCSSSC--BCHHHHHHHHHTTCEEECH
T ss_pred EeeccccccccH----HHHHHH-hhCEEeccCCCC--CCcchHHHHHHCCCEEeCh
Confidence 998865543222 223334 346888888876 3445567889999988764
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=95.06 E-value=0.048 Score=49.47 Aligned_cols=84 Identities=14% Similarity=0.258 Sum_probs=54.4
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.|| | .+-+|.++|+.|++.|++|.+.+|+++++++..++.... ... .+++.+. +.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~--------------~~~---~~~~~~~~Dvt~~ 67 (258)
T d1iy8a_ 5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET--------------APD---AEVLTTVADVSDE 67 (258)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------CTT---CCEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--------------CCC---CeEEEEeccCCCH
Confidence 45555 5 467999999999999999999999999877765533211 001 2333332 2344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
++++.+++++.....+=+++|+...
T Consensus 68 ~~v~~~~~~~~~~~G~iDiLVnnAG 92 (258)
T d1iy8a_ 68 AQVEAYVTATTERFGRIDGFFNNAG 92 (258)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCc
Confidence 5566666666665555577777644
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.05 E-value=0.015 Score=50.87 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=47.6
Q ss_pred CCCeEEEEc-ccHHHHHHHHHHHhCCCcEEE--EeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEEe
Q 011501 2 VQTRIGLAG-LAVMGQNLALNIAEKGFPISV--YNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 2 ~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v--~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~~ 76 (484)
.|++|-|.| .|.+|..++..|+++|++|.+ ..|++++...+.... .+.. ..+.+.+.+.++.+|.|+.+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~------~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEA------DVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCT------TEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCc------EEEEeeeccccccccccccceeeEEE
Confidence 367999998 699999999999999987554 568887655433211 1111 23455554445568888877
Q ss_pred cC
Q 011501 77 VK 78 (484)
Q Consensus 77 vp 78 (484)
..
T Consensus 76 a~ 77 (252)
T d2q46a1 76 TS 77 (252)
T ss_dssp CC
T ss_pred Ee
Confidence 64
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.92 E-value=0.12 Score=43.68 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=36.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...++.+...|. .|++.|+++++.+...+.+
T Consensus 30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~G 73 (174)
T d1e3ia2 30 STCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG 73 (174)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhC
Confidence 369999999999999999999997 6888999999877666544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.044 Score=46.15 Aligned_cols=115 Identities=14% Similarity=0.172 Sum_probs=66.9
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhC-CCcE-EEEeCChhHH-----HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEK-GFPI-SVYNRTTSKV-----DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~-G~~V-~v~dr~~~~~-----~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
.+||+|+|+ |+||+.+++.+.+. ++++ .+++|..... .++.... ..++....+++++.+. +|+||
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~----~~~~~~~~~~~~~~~~---~DViI 76 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAG----KTGVTVQSSLDAVKDD---FDVFI 76 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSS----CCSCCEESCSTTTTTS---CSEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccc----cCCceeeccHHHHhcc---cceEE
Confidence 468999995 99999999988775 5554 3566653221 0000000 1134566677776665 99988
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
=-..+. .+.+.++.. ...+.-+|-.||+......+..+.+.+ .+..+-+|
T Consensus 77 DFs~p~-~~~~~~~~a---~~~~~~~ViGTTG~~~~~~~~i~~~a~-~ipi~~ap 126 (162)
T d1diha1 77 DFTRPE-GTLNHLAFC---RQHGKGMVIGTTGFDEAGKQAIRDAAA-DIAIVFAA 126 (162)
T ss_dssp ECSCHH-HHHHHHHHH---HHTTCEEEECCCCCCHHHHHHHHHHTT-TSCEEECS
T ss_pred EeccHH-HHHHHHHHH---HhccceeEEecCCCcHHHHHHHHHHcC-CCCEEEEc
Confidence 765443 455444433 345677788888875444443443332 34444455
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.89 E-value=0.011 Score=52.19 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 36 (484)
++|.|||.|.-|.+.|..|+++|+ +|+++++++
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 589999999999999999999996 799999875
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.86 E-value=0.009 Score=55.22 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+||.|||.|.-|...|..|+++|++|+++++++
T Consensus 30 pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 30 PKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3589999999999999999999999999999875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.86 E-value=0.041 Score=50.33 Aligned_cols=85 Identities=18% Similarity=0.280 Sum_probs=55.6
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.|| |.+-+|.++|+.|+++|++|.+.+|++++++++.++..+.+ . .. .++..+. +.+.
T Consensus 6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~------~-------~~---~~~~~~~~Dvs~~ 69 (272)
T d1xkqa_ 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSG------V-------SE---KQVNSVVADVTTE 69 (272)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT------C-------CG---GGEEEEECCTTSH
T ss_pred CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------C-------CC---CceEEEEccCCCH
Confidence 55566 45779999999999999999999999998888776543210 0 00 1232222 2344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|+...
T Consensus 70 ~~v~~~~~~~~~~~g~iDilvnnAG 94 (272)
T d1xkqa_ 70 DGQDQIINSTLKQFGKIDVLVNNAG 94 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHhCCceEEEeCCc
Confidence 5566667666665555577777643
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.84 E-value=0.01 Score=53.74 Aligned_cols=33 Identities=21% Similarity=0.448 Sum_probs=31.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
+||.|||.|.-|..-|..|+++|++|+++++++
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999999999999999999999874
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=94.84 E-value=0.044 Score=47.10 Aligned_cols=97 Identities=12% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCeEEEEcc-cHHHHHHHHHHHhCC-CcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEecCC
Q 011501 3 QTRIGLAGL-AVMGQNLALNIAEKG-FPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~~~G-~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~vp~ 79 (484)
+.||||||. |..|.-|.+.|.+|- +++.....+...-+.+.............. ....++.... +|++|+++|.
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~Dvvf~alp~ 81 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSN---VDAVFCCLPH 81 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGG---CSEEEECCSS
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcc---cceeeecccc
Confidence 468999985 999999999999874 355544322221111211111000001111 1122233344 9999999999
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+. ..+. .+.+.....+||.+...
T Consensus 82 ~~-s~~~----~~~l~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 82 GT-TQEI----IKGLPQELKIVDLSADF 104 (183)
T ss_dssp SH-HHHH----HHTSCSSCEEEECSSTT
T ss_pred ch-HHHH----HHHHHhcCcccccchhh
Confidence 83 3333 33344444555555544
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=94.80 E-value=0.011 Score=55.89 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.0
Q ss_pred CC-CCeEEEEcccHHHHHHHHHHHhCC--CcEEEEeCChh
Q 011501 1 MV-QTRIGLAGLAVMGQNLALNIAEKG--FPISVYNRTTS 37 (484)
Q Consensus 1 M~-~~~IgiIGlG~mG~~lA~~L~~~G--~~V~v~dr~~~ 37 (484)
|. ++||+|||+|.-|...|..|++.| ++|++++++.+
T Consensus 1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 53 568999999999999999998876 69999999854
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.80 E-value=0.0074 Score=50.72 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=52.6
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC---cEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF---PISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~---~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
||||||. |..|.-|.+.|.++.+ ++..+..+...-+.+..... ........++... +.|++++++|.+
T Consensus 3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~-----~~~~~~~~~~~~~---~~d~~f~~~~~~ 74 (154)
T d2gz1a1 3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQ-----DITIEETTETAFE---GVDIALFSAGSS 74 (154)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTE-----EEEEEECCTTTTT---TCSEEEECSCHH
T ss_pred EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCC-----cccccccchhhhh---hhhhhhhccCcc
Confidence 7999997 9999999999998865 33334322111100000000 0111222222233 389999999876
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
. ....... ...+|..|||.|+..
T Consensus 75 ~-s~~~~~~---~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 T-SAKYAPY---AVKAGVVVVDNTSYF 97 (154)
T ss_dssp H-HHHHHHH---HHHTTCEEEECSSTT
T ss_pred c-hhhHHhh---hccccceehhcChhh
Confidence 3 2333222 345789999999876
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.79 E-value=0.021 Score=47.89 Aligned_cols=43 Identities=12% Similarity=0.190 Sum_probs=37.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|.|.+|...++.+...|.+|++.++++++.+.+.+.+
T Consensus 29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~G 71 (168)
T d1rjwa2 29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELG 71 (168)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT
T ss_pred CEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcC
Confidence 3799999999999998888889999999999999987766544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=94.77 E-value=0.049 Score=49.62 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=53.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.+| |.+-+|.++|+.|++.|++|.+.||++++.+++.++....+ . ...+-.=+.+.++
T Consensus 7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~--~----------------~~~~~~Dv~~~~~ 68 (268)
T d2bgka1 7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPD--V----------------ISFVHCDVTKDED 68 (268)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTT--T----------------EEEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCC--c----------------eEEEEccCCCHHH
Confidence 56666 45779999999999999999999999998887766432110 0 1111111234456
Q ss_pred HHHHHHHHhhhcCCCCEEEecCC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~st 105 (484)
++.+++.+.....+=+++|++..
T Consensus 69 v~~~~~~~~~~~g~iD~lVnnAG 91 (268)
T d2bgka1 69 VRNLVDTTIAKHGKLDIMFGNVG 91 (268)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHcCCcceeccccc
Confidence 66666666655545567776543
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.77 E-value=0.028 Score=50.57 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=34.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
++-|.|. +-+|.++|+.|++.|++|.+.+|++++++++.++.
T Consensus 7 ~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~ 49 (242)
T d1cyda_ 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC 49 (242)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc
Confidence 3444464 66999999999999999999999999888877654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=94.76 E-value=0.012 Score=53.47 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=30.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
+|.|||.|.+|.+.|..|+++|++|+++|++.
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999874
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.023 Score=48.40 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=57.8
Q ss_pred CeEEEEcccH-HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC--CCC---eee--cCCHhHHHhhcCCCcEEEE
Q 011501 4 TRIGLAGLAV-MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG--NLP---LYG--FHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 4 ~~IgiIGlG~-mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~--~~~---~~~--~~s~~e~~~~l~~advIi~ 75 (484)
+++.|||-+. +|.+||..|.++|..|+.++.+.... +.. ..... ..+ +.. .+.+++.... +|++|.
T Consensus 30 K~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~lk~~~~~---aDIvIs 103 (171)
T d1edza1 30 KKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK--FTR-GESLKLNKHHVEDLGEYSEDLLKKCSLD---SDVVIT 103 (171)
T ss_dssp CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE--EES-CCCSSCCCCEEEEEEECCHHHHHHHHHH---CSEEEE
T ss_pred CEEEEECCccccHHHHHHHHHHCCCEEEEeccccccc--ccc-ccceeeeeeccccccccchhHHhhcccc---CCEEEE
Confidence 5799999765 69999999999999999998653210 000 00000 000 000 0124455555 999999
Q ss_pred ecCCCch-HHHHHHHHhhhcCCCCEEEecCCC
Q 011501 76 LVKAGSP-VDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 76 ~vp~~~~-v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+++.+.. +. .+++++|.++||.+..
T Consensus 104 avG~p~~~i~------~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 104 GVPSENYKFP------TEYIKEGAVCINFACT 129 (171)
T ss_dssp CCCCTTCCBC------TTTSCTTEEEEECSSS
T ss_pred ccCCCccccC------hhhcccCceEeecccc
Confidence 9988632 11 2467899999999865
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.64 E-value=0.018 Score=45.63 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=31.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence 5899999999999999999999999999988764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=94.63 E-value=0.06 Score=48.24 Aligned_cols=84 Identities=17% Similarity=0.254 Sum_probs=56.4
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHhCCCc-------EEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLA-GL-AVMGQNLALNIAEKGFP-------ISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiI-Gl-G~mG~~lA~~L~~~G~~-------V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
++|.+| |. +-+|.++|+.|+++|++ |.+++|++++++++.++....+ .++..
T Consensus 1 K~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g-------------------~~~~~ 61 (240)
T d2bd0a1 1 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG-------------------ALTDT 61 (240)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT-------------------CEEEE
T ss_pred CCEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC-------------------CcEEE
Confidence 356655 55 66999999999999987 8999999998887765432110 22222
Q ss_pred E--ecCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 75 M--LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 75 ~--~vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+ =+.+.++++.+++.+.....+=+++|+....
T Consensus 62 ~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~ 95 (240)
T d2bd0a1 62 ITADISDMADVRRLTTHIVERYGHIDCLVNNAGV 95 (240)
T ss_dssp EECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCC
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCcceeeccccc
Confidence 2 2344556777777777665555778876543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=94.62 E-value=0.05 Score=49.63 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=48.1
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhH-----HHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcE
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSK-----VDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRV 72 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~-----~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~adv 72 (484)
++||.|+| .|.+|..++..|.++||+|++.+|++.. .+.+..... . ++.. ..+.+.+.+.+..++.
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~-~---~v~~v~~d~~d~~~~~~~~~~~~~ 78 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ-L---GAKLIEASLDDHQRLVDALKQVDV 78 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT-T---TCEEECCCSSCHHHHHHHHTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhcc-C---CcEEEEeecccchhhhhhccCcch
Confidence 56899998 5999999999999999999999987542 222211111 0 1221 1345555555555777
Q ss_pred EEEecCCC
Q 011501 73 IIMLVKAG 80 (484)
Q Consensus 73 Ii~~vp~~ 80 (484)
++.+++..
T Consensus 79 ~~~~~~~~ 86 (312)
T d1qyda_ 79 VISALAGG 86 (312)
T ss_dssp EEECCCCS
T ss_pred hhhhhhhc
Confidence 77776543
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.61 E-value=0.097 Score=46.71 Aligned_cols=175 Identities=11% Similarity=0.123 Sum_probs=100.3
Q ss_pred CeEEEEcccHHHHHHHHHHH-hCCCcEEEEe-----------CChhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIA-EKGFPISVYN-----------RTTSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~-~~G~~V~v~d-----------r~~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~a 70 (484)
++|.|=|+|++|..+|+.|. +.|..|+.++ .+.+.+..+.+......++ ..+. -+.+++... .+
T Consensus 32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~ 108 (234)
T d1b26a1 32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGER-ITNEELLEL--DV 108 (234)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEE-ECHHHHHTS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceecccccee-ecccccccc--cc
Confidence 58999999999999999997 4688877543 2333343333322110000 1111 245666653 49
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc--CCCCHHhhhcCCccccCCC
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG--VSGGEEGARYGPSLMPGGS 148 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p--v~gg~~~a~~g~~i~~gg~ 148 (484)
|+++-|--.+.-.. +..+.+. -++|+...|... +.+..+.|.++|+.|+..- -+||..
T Consensus 109 DI~~PcA~~~~I~~----~~a~~l~-~~~I~e~AN~p~--t~~a~~~L~~rgI~~~PD~~aNaGGVi------------- 168 (234)
T d1b26a1 109 DILVPAALEGAIHA----GNAERIK-AKAVVEGANGPT--TPEADEILSRRGILVVPDILANAGGVT------------- 168 (234)
T ss_dssp SEEEECSCTTCBCH----HHHTTCC-CSEEECCSSSCB--CHHHHHHHHHTTCEEECHHHHTTHHHH-------------
T ss_pred ceeecchhcccccH----HHHHHhh-hceEeecCCCCC--CHHHHHHHHHCCeEEechHHhcCCCee-------------
Confidence 99988865553222 3344443 368888888753 3445678899999888643 222221
Q ss_pred HHHHHHHHHHHHHHhccCCCCCCceEEeCCchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHH
Q 011501 149 FEAYKHIEDILLKVAAQVPDSGPCVTYVGKGGSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVF 222 (484)
Q Consensus 149 ~~~~~~v~~ll~~i~~~~~~~~~~~~~~G~~g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~ 222 (484)
-..++ +.+..... .+ -..-+.+.++..+...+.+.+..+++.+ +++.+...++
T Consensus 169 ~s~~E----~~qn~~~~--------~w--------~~e~V~~~l~~~m~~~~~~v~~~a~~~~-~~~r~aA~~~ 221 (234)
T d1b26a1 169 VSYFE----WVQDLQSF--------FW--------DLDQVRNALEKMMKGAFNDVMKVKEKYN-VDMRTAAYIL 221 (234)
T ss_dssp HHHHH----HHHHHTTC--------CC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CCHHHHHHHH
T ss_pred eeehh----cccccchh--------cc--------cHHHHHHHHHHHHHHHHHHHHHHHHHhC-cCHHHHHHHH
Confidence 11222 22222211 11 0123455555566677778888888888 8887765543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.60 E-value=0.058 Score=49.36 Aligned_cols=86 Identities=17% Similarity=0.277 Sum_probs=53.2
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
|+.|| |.+-+|.++|+.|++.|++|.+.+|++++++++.++....+ . .. .. ...+..=+.+.+.
T Consensus 5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~---~----~~----~~---~~~~~~Dv~~~~~ 70 (274)
T d1xhla_ 5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAG---V----PA----EK---INAVVADVTEASG 70 (274)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT---C----CG----GG---EEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC---C----CC----cc---eEEEEeeCCCHHH
Confidence 45555 45679999999999999999999999998887766543211 0 00 00 1112222234445
Q ss_pred HHHHHHHHhhhcCCCCEEEecC
Q 011501 83 VDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~iiId~s 104 (484)
++.+++++.....+=+++|+..
T Consensus 71 v~~~~~~~~~~~G~iDilVnnA 92 (274)
T d1xhla_ 71 QDDIINTTLAKFGKIDILVNNA 92 (274)
T ss_dssp HHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHcCCceEEEeec
Confidence 6666666665544446666653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.58 E-value=0.014 Score=54.89 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=32.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+||.|||+|.-|...|..|+++|++|++++++..
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 36899999999999999999999999999998853
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.046 Score=49.93 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=57.1
Q ss_pred CeEEEE--cccHHHHHHHHHHHhC-CCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC
Q 011501 4 TRIGLA--GLAVMGQNLALNIAEK-GFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG 80 (484)
Q Consensus 4 ~~IgiI--GlG~mG~~lA~~L~~~-G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~ 80 (484)
++|+|| |.+-+|..+|+.|++. |..|++++|++++.++..++....+ .. +.++.+=+.+.
T Consensus 3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--------------~~---~~~~~~Dvs~~ 65 (275)
T d1wmaa1 3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--------------LS---PRFHQLDIDDL 65 (275)
T ss_dssp CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--------------CC---CEEEECCTTCH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--------------Cc---EEEEEEecCCH
Confidence 689999 6778999999999975 8999999999999887766543210 01 33333334455
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++.+.....+=+++|+...
T Consensus 66 ~sv~~~~~~~~~~~g~iDiLVnNAG 90 (275)
T d1wmaa1 66 QSIRALRDFLRKEYGGLDVLVNNAG 90 (275)
T ss_dssp HHHHHHHHHHHHHHSSEEEEEECCC
T ss_pred HHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 5666666666654433466666543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.035 Score=49.97 Aligned_cols=123 Identities=11% Similarity=0.161 Sum_probs=70.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+.. .....+-.-+....+.+..+ .+++-+..++...
T Consensus 31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~-np~~~i~~~~~~~ 109 (247)
T d1jw9b_ 31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRI-NPHIAITPVNALL 109 (247)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHH-CTTSEEEEECSCC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHh-hcccchhhhhhhh
Confidence 589999999999999999999998 78899876433333322110 00000000011112222211 2677777776542
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSG 132 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~g 132 (484)
.-.. .. ..+..-++++|++.. +.....+.+.+.+.++.|+.+.+.+
T Consensus 110 ~~~~-~~---~~~~~~divid~~d~-~~~~~~in~~~~~~~ip~i~g~~~~ 155 (247)
T d1jw9b_ 110 DDAE-LA---ALIAEHDLVLDCTDN-VAVRNQLNAGCFAAKVPLVSGAAIR 155 (247)
T ss_dssp CHHH-HH---HHHHTSSEEEECCSS-HHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred hhcc-cc---ccccccceeeeccch-hhhhhhHHHHHHHhCCCcccccccc
Confidence 2222 22 223456899998765 3344445556667788888766554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=94.44 E-value=0.046 Score=49.66 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=35.1
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
|+.+| |.+-+|..+|+.|++.|++|.+++|+++++++..++.
T Consensus 9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~ 52 (259)
T d1xq1a_ 9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW 52 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 55566 4567999999999999999999999999888776543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.02 Score=45.30 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=31.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|..|.-+|..|++.|.+|+++++.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 589999999999999999999999999999875
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=94.39 E-value=0.028 Score=47.38 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=56.3
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecC---CHh-HHHhhc--CCCcEEEEe
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFH---DPE-SFVHSI--QKPRVIIML 76 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~---s~~-e~~~~l--~~advIi~~ 76 (484)
+|.|+|. |.+|...++.+...|. +|++.++++++.+.+.+.+.. ..... ++. +..+.. ...|++|-|
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~-----~~i~~~~~~~~~~~~~~~~~~~~d~vid~ 104 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGAD-----YVINASMQDPLAEIRRITESKGVDAVIDL 104 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCS-----EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred EEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCc-----eeeccCCcCHHHHHHHHhhcccchhhhcc
Confidence 6999995 9999999888888885 899999999988877765532 11111 222 222111 236777777
Q ss_pred cCCCchHHHHHHHHhhhcCCCCEEEecC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
+.... .++.....++++-.++..+
T Consensus 105 ~g~~~----~~~~a~~~l~~~G~iv~~G 128 (170)
T d1jvba2 105 NNSEK----TLSVYPKALAKQGKYVMVG 128 (170)
T ss_dssp CCCHH----HHTTGGGGEEEEEEEEECC
T ss_pred cccch----HHHhhhhhcccCCEEEEec
Confidence 75432 2333445555555555543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.39 E-value=0.021 Score=45.77 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
+.++.|||.|.+|.-+|..|++.|.+|+++++++
T Consensus 23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence 3589999999999999999999999999999876
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.38 E-value=0.003 Score=56.31 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPIS 30 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~ 30 (484)
|||.|||.|.+|.+.|..|+++|++|+
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCce
Confidence 589999999999999999999998643
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.36 E-value=0.017 Score=52.05 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~ 37 (484)
++|.|||.|.-|..+|..|+++|+ +|.+++++++
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 689999999999999999999995 8999999764
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.31 E-value=0.047 Score=49.00 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=51.5
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| | .+-+|..+|+.|+++|++|.+.+|+.+++++..++.. .+++.+ =+.+.
T Consensus 6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------------------~~~~~~~~Dls~~ 63 (241)
T d2a4ka1 6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE----------------------AEAIAVVADVSDP 63 (241)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC----------------------SSEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC----------------------CceEEEEecCCCH
Confidence 44444 5 4669999999999999999999999988766554321 122222 12334
Q ss_pred chHHHHHHHHhhhcCCCCEEEecC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
+.+++.++.+.....+=+++|+..
T Consensus 64 ~~i~~~~~~i~~~~g~iDiLinnA 87 (241)
T d2a4ka1 64 KAVEAVFAEALEEFGRLHGVAHFA 87 (241)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEGG
T ss_pred HHHHHHHHHHHHHhCCccEecccc
Confidence 456666666666555557777754
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=94.30 E-value=0.12 Score=46.67 Aligned_cols=88 Identities=13% Similarity=0.214 Sum_probs=53.6
Q ss_pred CCCCeEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe-
Q 011501 1 MVQTRIGLA--GLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML- 76 (484)
Q Consensus 1 M~~~~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~- 76 (484)
|-.-|+.+| |.+-+|.++|+.|++.|++|.+.+|+. +..+++.++.... . . .+++.+.
T Consensus 1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~--------------~-g---~~~~~~~~ 62 (260)
T d1x1ta1 1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQ--------------H-G---VKVLYDGA 62 (260)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHH--------------H-T---SCEEEECC
T ss_pred CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHh--------------c-C---CcEEEEEC
Confidence 334467777 567799999999999999999999974 4555544322110 0 0 2233222
Q ss_pred -cCCCchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 77 -VKAGSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 77 -vp~~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.+.++++++++++.....+=+++|+....
T Consensus 63 Dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~ 93 (260)
T d1x1ta1 63 DLSKGEAVRGLVDNAVRQMGRIDILVNNAGI 93 (260)
T ss_dssp CTTSHHHHHHHHHHHHHHHSCCSEEEECCCC
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEeeccc
Confidence 233445666666666555455677766443
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.23 E-value=0.042 Score=46.52 Aligned_cols=44 Identities=11% Similarity=0.039 Sum_probs=36.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~ 47 (484)
.+|.|+|. |.+|....+.....|.+|++.++++++.+.+.+.+.
T Consensus 30 ~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 30 ESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 36999995 999999988888899999999999888777665543
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.22 E-value=0.074 Score=47.96 Aligned_cols=86 Identities=10% Similarity=0.188 Sum_probs=57.4
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEE--ecCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIM--LVKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~--~vp~~ 80 (484)
|+.+| | .+-+|.++|+.|++.|++|.+.+|+.++.++..++.... ... .++..+ =+.+.
T Consensus 4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------------~~~---~~~~~~~~Dv~~~ 66 (254)
T d2gdza1 4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------------FEP---QKTLFIQCDVADQ 66 (254)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------------SCG---GGEEEEECCTTSH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------------cCC---CcEEEEEeecCCH
Confidence 56666 5 577999999999999999999999999887766543210 000 123222 23444
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+.++++++.+.....+=+++|+.....
T Consensus 67 ~~v~~~~~~~~~~~G~iDilVnnAg~~ 93 (254)
T d2gdza1 67 QQLRDTFRKVVDHFGRLDILVNNAGVN 93 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHHHHcCCcCeeccccccc
Confidence 567777777766555557888765554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=94.11 E-value=0.054 Score=49.12 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=52.4
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKAG 80 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~~ 80 (484)
|+.+| | .+-+|..+|+.|+++|++|.+.+|+.++.++..++..+. . . .+++.+. +.+.
T Consensus 10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~--------------~-g---~~~~~~~~Dv~~~ 71 (260)
T d1h5qa_ 10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKE--------------F-G---VKTKAYQCDVSNT 71 (260)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHH--------------H-T---CCEEEEECCTTCH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH--------------h-C---CceEEEEccCCCH
Confidence 56666 4 566999999999999999999999988776655432110 0 0 2222222 2344
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
+.++.+++++.....+=+++|++..
T Consensus 72 ~~v~~~~~~~~~~~g~iDilVnnAg 96 (260)
T d1h5qa_ 72 DIVTKTIQQIDADLGPISGLIANAG 96 (260)
T ss_dssp HHHHHHHHHHHHHSCSEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCcEeccccc
Confidence 4566666666655444466666543
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.07 E-value=0.027 Score=45.01 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.++.|||.|.+|.-+|..|.+.|.+|+++.+++
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~ 53 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSI 53 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence 579999999999999999999999999998763
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.03 E-value=0.13 Score=46.09 Aligned_cols=115 Identities=14% Similarity=0.107 Sum_probs=69.9
Q ss_pred CeEEEEcccHHHHHHHHHHHh-CCCcEEE-EeCC----------hhHHHHHHHHhhhcCCC-CeeecCCHhHHHhhcCCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAE-KGFPISV-YNRT----------TSKVDETVERAKQEGNL-PLYGFHDPESFVHSIQKP 70 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~-~G~~V~v-~dr~----------~~~~~~~~~~~~~~~~~-~~~~~~s~~e~~~~l~~a 70 (484)
++|.|-|+|++|..+|+.|.+ .|..|.. .|.+ .+.+.+.......-.++ +... -+.+++... +|
T Consensus 33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~--~~ 109 (239)
T d1gtma1 33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATN-ITNEELLEL--EV 109 (239)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEE-ECHHHHHHS--CC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCee-ecccccccc--cc
Confidence 589999999999999999975 5876653 3443 22333332222100001 1122 255666653 49
Q ss_pred cEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 71 RVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 71 dvIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|+++-|-..+.-..+ ..+.+ .-++|+...|... +.+..+.|.++|+.|+..
T Consensus 110 DIl~PcA~~~~I~~~----~a~~i-~ak~I~e~AN~p~--t~ea~~~L~~rgI~~iPD 160 (239)
T d1gtma1 110 DVLAPAAIEEVITKK----NADNI-KAKIVAEVANGPV--TPEADEILFEKGILQIPD 160 (239)
T ss_dssp SEEEECSCSCCBCTT----GGGGC-CCSEEECCSSSCB--CHHHHHHHHHTTCEEECH
T ss_pred cEEeeccccccccHH----HHHhc-cccEEEecCCCCC--CHHHHHHHHHCCCEEecc
Confidence 999988765532222 23334 3468888888764 334567789999988864
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.00 E-value=0.026 Score=44.79 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.-+|..|++.|.+|++++|.+
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence 589999999999999999999999999999854
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=93.95 E-value=0.032 Score=49.85 Aligned_cols=69 Identities=9% Similarity=0.147 Sum_probs=44.6
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
+++-|.|. +-+|..+|+.|++.|++|.+.+|+++.+++...+.. ........+++.+.+.+-|++|-+.
T Consensus 5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~-----~~Dv~~~~~~~~~~~g~iD~lVnnA 74 (234)
T d1o5ia_ 5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV-----VCDLRKDLDLLFEKVKEVDILVLNA 74 (234)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE-----ECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE-----EcchHHHHHHHHHHhCCCcEEEecc
Confidence 34555564 679999999999999999999999876554321100 0111234455666666677766653
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.93 E-value=0.08 Score=47.34 Aligned_cols=41 Identities=12% Similarity=0.206 Sum_probs=34.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
|++|| |.+-+|.++|+.|+++|++|++.+|+.++.++..++
T Consensus 6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~ 48 (248)
T d2o23a1 6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK 48 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH
Confidence 67766 567799999999999999999999999887766553
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=93.93 E-value=0.03 Score=44.71 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=31.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
++|.|||.|.+|.-+|..|++.|.+|+++++++.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence 5899999999999999999999999999998764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.92 E-value=0.019 Score=50.85 Aligned_cols=34 Identities=15% Similarity=0.258 Sum_probs=30.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~~ 37 (484)
+||+|||.|.-|..-|..|+++ |++|++||+.+.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~ 37 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV 37 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 5899999999999999999875 789999998864
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=93.92 E-value=0.063 Score=45.25 Aligned_cols=94 Identities=9% Similarity=0.075 Sum_probs=56.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhhhcCCCCeeecCC-HhHHHhhc--CCCcEEEEecCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAKQEGNLPLYGFHD-PESFVHSI--QKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~~~l--~~advIi~~vp~ 79 (484)
..|.|+|+|.+|...++.+...|. .|.+.|+++++.+.+.+.+... -+....+ .++..+.. ...|+||.++..
T Consensus 34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~---~i~~~~~~~~~~~~~~~~~g~d~vid~~g~ 110 (172)
T d1h2ba2 34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH---VVDARRDPVKQVMELTRGRGVNVAMDFVGS 110 (172)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSE---EEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred CEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccce---eecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence 368999999999998888777674 7788899999888777654321 0111112 22222211 236777777765
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGG 104 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~s 104 (484)
... ++.....++++-.++-.+
T Consensus 111 ~~~----~~~a~~~l~~~G~iv~~G 131 (172)
T d1h2ba2 111 QAT----VDYTPYLLGRMGRLIIVG 131 (172)
T ss_dssp HHH----HHHGGGGEEEEEEEEECC
T ss_pred chH----HHHHHHHHhCCCEEEEEe
Confidence 422 334445555554444443
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=93.87 E-value=0.082 Score=44.63 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=37.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~ 47 (484)
+|.|+|+|-+|...+..++..|. .|++.++++++.+...+.+.
T Consensus 31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176)
T d2jhfa2 31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence 69999999999999999999885 88999999999887766543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.86 E-value=0.19 Score=42.74 Aligned_cols=114 Identities=13% Similarity=0.158 Sum_probs=72.7
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcC-CCCeee-cCCHhHHHhhcCCCcEEEEecCCCch
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEG-NLPLYG-FHDPESFVHSIQKPRVIIMLVKAGSP 82 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~-~~~~~~-~~s~~e~~~~l~~advIi~~vp~~~~ 82 (484)
+|-=||+|.=..++ .|++.+.+|+.+|++++.++.+.+.....+ ..+++. ..+..+.....+..|.|++..+.. .
T Consensus 36 ~VLDiGcGsG~~s~--~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~~-~ 112 (186)
T d1l3ia_ 36 VAVDVGCGTGGVTL--ELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGG-E 112 (186)
T ss_dssp EEEEESCTTSHHHH--HHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCTT-C
T ss_pred EEEEEECCeEcccc--cccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCccc-c
Confidence 46667777643333 355667799999999998887766543321 013332 356666666666789998876554 6
Q ss_pred HHHHHHHHhhhcCCCCEE-EecCCCChHHHHHHHHHHHHcCC
Q 011501 83 VDQTIKTLSVYMEKGDCI-IDGGNEWYENTERRQKAVAELGL 123 (484)
Q Consensus 83 v~~vl~~l~~~l~~g~ii-Id~st~~~~~~~~~~~~l~~~g~ 123 (484)
..++++.+...|++|..+ +.. ...+......+.+...+.
T Consensus 113 ~~~~~~~~~~~LkpgG~lvi~~--~~~e~~~~~~~~l~~~~~ 152 (186)
T d1l3ia_ 113 LQEILRIIKDKLKPGGRIIVTA--ILLETKFEAMECLRDLGF 152 (186)
T ss_dssp HHHHHHHHHHTEEEEEEEEEEE--CBHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHhCcCCEEEEEe--eccccHHHHHHHHHHcCC
Confidence 788888888888877654 433 233444555556666554
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.11 Score=46.63 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=30.1
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHHH
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 40 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 40 (484)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+++..+
T Consensus 6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~ 43 (248)
T d2d1ya1 6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE 43 (248)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 45555 4 678999999999999999999999987643
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=93.85 E-value=0.027 Score=44.93 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||.|..|.-+|..|++.|++|+++++++.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence 4799999999999999999999999999998754
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=93.79 E-value=0.014 Score=49.24 Aligned_cols=123 Identities=18% Similarity=0.137 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhh--hhhhccccccccCCCCchhHHHh
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFL--IEITADIFGIKDDKGDGYLVDKV 257 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l--~~~~~~~l~~~~~~~~~~~l~~i 257 (484)
|-....++-.|...+.....+.|+..+++..| -+++.+... .|-++-.+ ....++..+.+..+..+..++.+
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~l-----aGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~ 94 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALG-GDGSAVFGL-----AGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEI 94 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTT-CCSTTTTST-----TTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhC-CCccceecc-----ccchhheeeeecchhHHHHHHHHHhccccHHHH
Confidence 33344456678888999999999999999999 565554321 22222111 11111111111112223456777
Q ss_pred hhhcCCCCchHHHHH----HHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhccCC
Q 011501 258 LDKTGMKGTGKWTVQ----QAADLSVAAPTIESSLDARFLSGLKEERVEAAKVFRSS 310 (484)
Q Consensus 258 ~~~~~~k~tg~~~~~----~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~~~~ 310 (484)
.+..+++.+|..++. .++++++.+|++.+ | .+.+...++.+..+..++..|
T Consensus 95 ~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~-v-y~Il~~~~~p~~~i~~Lm~r~ 149 (160)
T d1n1ea1 95 QRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQ-I-YEIVYKKKNPRDALADLLSCG 149 (160)
T ss_dssp HHSCCSCCHHHHHHHHHHHHHHHHTCCCHHHHH-H-HHHHHSCCCHHHHHHHHTTSC
T ss_pred HHhccchHHHHHHHHHHHHHHHHcCCCCcHHHH-H-HHHHhCcCCHHHHHHHHHCCC
Confidence 777888999987774 46788999998875 4 456666677788888887654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=93.75 E-value=0.11 Score=46.92 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=28.4
Q ss_pred CeEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGL-A--VMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+++-|.|. | -+|.++|+.|+++|++|++.+|+++
T Consensus 6 K~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~ 42 (274)
T d2pd4a1 6 KKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES 42 (274)
T ss_dssp CEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 34556675 5 4999999999999999999999964
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.073 Score=53.50 Aligned_cols=126 Identities=9% Similarity=0.077 Sum_probs=73.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHhh-hcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERAK-QEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~~-~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+|.|||+|..|..++++|+..|. +++++|.+.-....+...-- .....+-.-+....+.+..+ .+++-+..+..
T Consensus 26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~l-Np~v~i~~~~~-- 102 (529)
T d1yova1 26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQEL-NSDVSGSFVEE-- 102 (529)
T ss_dssp CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTT-CTTSBCCEESS--
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHh-CCCCcEEEEcC--
Confidence 589999999999999999999997 79999976544444443210 00000000011112222222 24544444433
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEeccCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMGVSGG 133 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~pv~gg 133 (484)
.....++.....+..-++||++.. .+.....+.+.+.+.++.|+.+.+.|-
T Consensus 103 ~~~~~~~~~~~~~~~~dvVv~~~~-~~~~~~~l~~~c~~~~ip~i~~~~~G~ 153 (529)
T d1yova1 103 SPENLLDNDPSFFCRFTVVVATQL-PESTSLRLADVLWNSQIPLLICRTYGL 153 (529)
T ss_dssp CHHHHHHSCGGGGGGCSEEEEESC-CHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CchhhhhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEeccCC
Confidence 244444433344555678887744 455556677778888888888765543
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=93.73 E-value=0.025 Score=52.14 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=30.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 36 (484)
++|.|||.|.+|.+.|..|++.|. +|+++|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 489999999999999999999996 799999874
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.033 Score=44.63 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++|.|||.|.+|.-+|..|++.|.+|+++.|++
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence 589999999999999999999999999999864
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.51 E-value=0.086 Score=45.62 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=34.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|+|.+|...+..+...|. .|++.|+++++.+.+.+.+
T Consensus 27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~G 70 (195)
T d1kola2 27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG 70 (195)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT
T ss_pred CEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhcc
Confidence 368999999999877777766676 7889999999887766544
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.48 E-value=0.032 Score=48.51 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=30.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|...|..|+++|++|+++++++
T Consensus 7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 58999999999999999999999999999985
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=93.48 E-value=0.04 Score=44.01 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=30.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence 589999999999999999999999999998765
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=93.45 E-value=0.042 Score=43.58 Aligned_cols=33 Identities=24% Similarity=0.408 Sum_probs=30.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.-+|..|++.|.+|+++.++.
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence 589999999999999999999999999998764
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.025 Score=52.54 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||+|.-|...|..|+++|++|.+++++..
T Consensus 2 ~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred ccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 4799999999999999999999999999998753
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=93.33 E-value=0.14 Score=45.90 Aligned_cols=83 Identities=16% Similarity=0.220 Sum_probs=52.5
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEE-eCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVY-NRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~-dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
.|.+| |.+-+|..+|+.|+++|++|.+. .|+++..+++.++.... . .+++.+. +.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~----------------g---~~~~~~~~Dv~~ 62 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY----------------G---GQAITFGGDVSK 62 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH----------------T---CEEEEEECCTTS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc----------------C---CcEEEEeCCCCC
Confidence 36666 56779999999999999999885 56777666665433211 0 2222222 334
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.+.++.+++.+.....+=+++|+....
T Consensus 63 ~~~v~~~~~~~~~~~g~iDiLVnnAg~ 89 (244)
T d1edoa_ 63 EADVEAMMKTAIDAWGTIDVVVNNAGI 89 (244)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCcccccccc
Confidence 445666677766655555777776543
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=93.32 E-value=0.13 Score=46.02 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=50.4
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhHH-HHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSKV-DETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~-~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
|+++| | .+-+|.++|+.|++.|++|.+.||+++.. +...+... .+++.+. +.+
T Consensus 6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g----------------------~~~~~~~~Dvs~ 63 (247)
T d2ew8a1 6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLG----------------------RRVLTVKCDVSQ 63 (247)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTT----------------------CCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcC----------------------CcEEEEEeeCCC
Confidence 56666 4 56799999999999999999999987532 21111100 1222222 344
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
.++++.+++++.....+=+++|+....
T Consensus 64 ~~~v~~~~~~~~~~~G~iDilVnnAG~ 90 (247)
T d2ew8a1 64 PGDVEAFGKQVISTFGRCDILVNNAGI 90 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 456667777766655555777776544
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=93.32 E-value=0.11 Score=47.16 Aligned_cols=40 Identities=15% Similarity=0.318 Sum_probs=31.7
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChh-HHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTS-KVDETVE 44 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~-~~~~~~~ 44 (484)
|+.|| |.+-+|..+|+.|++.|++|.+.+|+.+ ..+.+.+
T Consensus 8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~ 50 (261)
T d1geea_ 8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLE 50 (261)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHH
Confidence 56676 5678999999999999999999999864 4444443
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.036 Score=50.58 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=31.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.||.|||.|.-|..-|..|+++|++|++++.+.
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999999999999999999999999999764
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=93.09 E-value=0.046 Score=44.31 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.+|.|||.|.+|.-+|..|++.|.+|+++++.+.
T Consensus 36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence 5899999999999999999999999999998653
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=92.97 E-value=0.12 Score=48.32 Aligned_cols=31 Identities=13% Similarity=0.411 Sum_probs=28.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
|||-|+| .|.+|+.++..|++.||+|.++||
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~ 32 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN 32 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 5899996 699999999999999999999986
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.94 E-value=0.22 Score=44.56 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=50.3
Q ss_pred eEEEEcc-c--HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 5 RIGLAGL-A--VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 5 ~IgiIGl-G--~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.+-|.|. | -+|.++|+.|++.|++|.+.+|+++..+...+..... . .+..+-.-+.+.+
T Consensus 10 ~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~---------------~---~~~~~~~D~~~~~ 71 (256)
T d1ulua_ 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEAL---------------G---GALLFRADVTQDE 71 (256)
T ss_dssp EEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---------------T---CCEEEECCTTCHH
T ss_pred EEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhcc---------------C---cccccccccCCHH
Confidence 3445575 3 4999999999999999999999876544433221110 0 0222222233445
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEW 107 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~ 107 (484)
+++.+++.+.....+=+++|++....
T Consensus 72 ~v~~~~~~~~~~~g~iDilVnnag~~ 97 (256)
T d1ulua_ 72 ELDALFAGVKEAFGGLDYLVHAIAFA 97 (256)
T ss_dssp HHHHHHHHHHHHHSSEEEEEECCCCC
T ss_pred HHHHHHHHHHHhcCCceEEEeccccc
Confidence 56666666665544446777765443
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=92.89 E-value=0.039 Score=49.98 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=33.2
Q ss_pred CCCeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 2 VQTRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 2 ~~~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
+++||.|+|. |.+|+.++..|.++||+|.+.+|++..
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~ 39 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA 39 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence 4689999985 999999999999999999999997654
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.89 E-value=0.042 Score=43.21 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=31.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.++.|||.|..|.-+|..|++.|.+|+++++.+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence 5899999999999999999999999999988653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=92.81 E-value=0.15 Score=47.64 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=33.6
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHH
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVD 40 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~ 40 (484)
+++|.|+| .|.+|+.++..|.++||+|.+..|++++..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~ 41 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI 41 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhh
Confidence 56899998 599999999999999999999999876543
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=92.71 E-value=0.41 Score=39.85 Aligned_cols=43 Identities=14% Similarity=0.195 Sum_probs=36.3
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|.|+|.|.+|...+..++..|- .|++.|+++++.+...+.+
T Consensus 30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G 73 (175)
T d1cdoa2 30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG 73 (175)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred CEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence 369999999999999988888775 6889999999987776654
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=92.67 E-value=0.048 Score=48.43 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
-.|.|||.|..|...|..|+++|++|.++++++..
T Consensus 3 yDViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~ 37 (251)
T d2i0za1 3 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL 37 (251)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 47999999999999999999999999999988653
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.65 E-value=0.15 Score=46.15 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=49.8
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCCh-hHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe--cCC
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTT-SKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML--VKA 79 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~-~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~--vp~ 79 (484)
|+.+| |.+-+|.++|+.|+++|++|.+.+++. +..+++.+..... ..++..+. +.+
T Consensus 19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~-------------------g~~~~~~~~D~~~ 79 (272)
T d1g0oa_ 19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-------------------GSDAACVKANVGV 79 (272)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT-------------------TCCEEEEECCTTC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh-------------------CCceeeEeCCCCC
Confidence 56666 478899999999999999999988774 4444444322111 02233322 233
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
.+.++..++.+......=+++|+...
T Consensus 80 ~~~v~~~~~~~~~~~g~idilV~nag 105 (272)
T d1g0oa_ 80 VEDIVRMFEEAVKIFGKLDIVCSNSG 105 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCccccccc
Confidence 34555666666655545566666543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=92.65 E-value=0.046 Score=49.54 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=29.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.+|.+.|..|+++|++|+++|+..
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 58999999999999999999999999999853
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.52 E-value=0.053 Score=48.07 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=32.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
.+|.|||.|.-|...|..|++.|++|++++++.+-
T Consensus 50 k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 50 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred ceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 58999999999999999999999999999988653
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=92.39 E-value=0.06 Score=50.87 Aligned_cols=33 Identities=12% Similarity=0.278 Sum_probs=30.2
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|||-|.| .|.+|+.++..|.++||+|+++|+..
T Consensus 16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~ 49 (363)
T d2c5aa1 16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKK 49 (363)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence 7999996 79999999999999999999998754
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.21 Score=45.21 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=34.0
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHH
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVER 45 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~ 45 (484)
++-|.|. +-+|.++|+.|+++|++|++.+|+.++++++.++
T Consensus 16 ~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~ 57 (269)
T d1xu9a_ 16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSH 57 (269)
T ss_dssp EEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 3444465 5599999999999999999999999988877654
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=92.35 E-value=0.044 Score=43.77 Aligned_cols=34 Identities=12% Similarity=0.224 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.++.|||.|.+|.-+|..|.+.|.+|++..|++.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence 5899999999999999999999999999988653
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.025 Score=50.26 Aligned_cols=75 Identities=17% Similarity=0.236 Sum_probs=49.0
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHHHHhhhcCCCCeee--cCCHhHHHhhcCCCcEEEE
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGF--PISVYNRTTSKVDETVERAKQEGNLPLYG--FHDPESFVHSIQKPRVIIM 75 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~~~~~~~~~~~~~~--~~s~~e~~~~l~~advIi~ 75 (484)
|+.++|-|.| +|.+|..++..|.++|+ +|++.+|++.....-.... ..... ..+++++.+.++.+|+++.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~-----i~~~~~D~~~~~~~~~~~~~~d~vi~ 86 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKN-----VNQEVVDFEKLDDYASAFQGHDVGFC 86 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGG-----CEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccce-----eeeeeecccccccccccccccccccc
Confidence 5567899996 69999999999999995 8999999765422111000 01111 2244555555666888888
Q ss_pred ecCCC
Q 011501 76 LVKAG 80 (484)
Q Consensus 76 ~vp~~ 80 (484)
++...
T Consensus 87 ~~~~~ 91 (232)
T d2bkaa1 87 CLGTT 91 (232)
T ss_dssp CCCCC
T ss_pred ccccc
Confidence 77543
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=92.32 E-value=0.051 Score=50.46 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=31.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+|.|||+|.-|..+|..|.++|++|.+++++++
T Consensus 9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~ 41 (298)
T d1w4xa1 9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD 41 (298)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence 699999999999999999999999999999865
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.14 E-value=0.098 Score=44.25 Aligned_cols=41 Identities=12% Similarity=0.020 Sum_probs=33.8
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.+|.|.| .|.+|...++.+...|.+|.+..+++++.+.+.+
T Consensus 27 ~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~ 68 (183)
T d1pqwa_ 27 ERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR 68 (183)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred CEEEEECCCCCcccccchhhccccccceeeeccccccccccc
Confidence 3687877 5999999999888889999999999888765554
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.10 E-value=0.074 Score=44.35 Aligned_cols=111 Identities=11% Similarity=0.008 Sum_probs=62.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhCCCCHHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcC----CC
Q 011501 189 HNGIEYGDMQLIAEAYDVLKSVGKLSNEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTG----MK 264 (484)
Q Consensus 189 ~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~----~k 264 (484)
.|...+.....+.|+..+++..| -+++.+... .|.++-.+.-..++...-+..+..+..++.+.+++. +.
T Consensus 34 ~N~~aali~~g~~Em~~~~~~~g-~~~~t~~~~-----aGiGDLi~Tc~~sRN~~~G~~l~~G~~~~e~~~~~~~~~~~~ 107 (155)
T d1txga1 34 SNAKGVIATRAINEMAELIEILG-GDRETAFGL-----SGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGV 107 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-SCGGGGGST-----TTHHHHHHTTTCHHHHHHHHHHHTTCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhhHhhHHHhhc-ccchhhccc-----chhhhHHhhcCCCCccHHHHHHhhhhhHHHHHHHhccccccc
Confidence 58888888999999999999999 787765432 222222221111111111111222234445544432 35
Q ss_pred CchHHHHH----HHHHcCCCcchHHHHHHHHHHhcCchHHHHHHHhc
Q 011501 265 GTGKWTVQ----QAADLSVAAPTIESSLDARFLSGLKEERVEAAKVF 307 (484)
Q Consensus 265 ~tg~~~~~----~A~~~gvp~p~~~~av~~r~~s~~~~~r~~~~~~~ 307 (484)
.+|..++. .++++++.+|++.. |++-+.. .++....+..++
T Consensus 108 vEG~~t~~~v~~l~~~~~i~~Pi~~~-vy~Il~~-~~~~~~~i~~L~ 152 (155)
T d1txga1 108 VEGYKTAEKAYRLSSKINADTKLLDS-IYRVLYE-GLKVEEVLFELA 152 (155)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCHHHHH-HHHHHHS-CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCCcHHHH-HHHHHhC-cCCHHHHHHHHH
Confidence 67877765 57788999998874 4554433 444445544443
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=91.80 E-value=0.21 Score=44.89 Aligned_cols=41 Identities=20% Similarity=0.493 Sum_probs=31.6
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEE-EeCChhHHHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISV-YNRTTSKVDETVER 45 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v-~dr~~~~~~~~~~~ 45 (484)
|+.+| |.+-+|..+|+.|++.|++|++ ++++.+..+++.++
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~ 50 (259)
T d1ja9a_ 7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAE 50 (259)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHH
Confidence 55555 5677999999999999999987 56676666665544
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.066 Score=49.38 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=29.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|..-|..|+++|++|++++++.
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 48899999999999999999999999999874
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.21 Score=48.56 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=30.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~ 36 (484)
+||.|||+|.+|..++.+|+..|+ +++++|.+.
T Consensus 38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~ 71 (426)
T d1yovb1 38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT 71 (426)
T ss_dssp CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 589999999999999999999998 899998764
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.73 E-value=0.04 Score=48.51 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC-------CcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG-------FPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G-------~~V~v~dr~~~ 37 (484)
.||+|||.|.-|.+-|..|+++| ++|++|++.+.
T Consensus 3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~ 43 (239)
T d1lqta2 3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT 43 (239)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence 48999999999999999999988 47999998864
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=91.73 E-value=0.085 Score=41.53 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=31.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
++|.|||.|.+|.-+|..|++.|.+|+++.+.+.
T Consensus 23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence 5899999999999999999999999999998754
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=91.54 E-value=0.59 Score=38.76 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=34.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCC-cEEEEeCChhHHHHHHHHh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVERA 46 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~~~~~~ 46 (484)
+|.|+|.|-+|...++.+...|. .|++.++++++.+...+.+
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lG 73 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFG 73 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHT
T ss_pred EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhC
Confidence 68999999999988888888886 6777899998877666554
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.064 Score=48.21 Aligned_cols=39 Identities=23% Similarity=0.275 Sum_probs=33.9
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~ 43 (484)
|+.+| |.+.+|.++|+.|+++|++|++.+|++++++++.
T Consensus 7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~ 47 (245)
T d2ag5a1 7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE 47 (245)
T ss_dssp CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 67777 6788999999999999999999999988766544
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.44 E-value=0.38 Score=38.21 Aligned_cols=111 Identities=10% Similarity=0.028 Sum_probs=80.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEE-EEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCc
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPIS-VYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGS 81 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~-v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~ 81 (484)
.||-|-|. |..|+--+..+.+.|-+|. ++.....- . . ..++..+++.+|+++.. .+|.-++-||+..
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~YGT~iVaGVtPgKgG--~---~-----~~giPVf~tV~eA~~~~-~~daSvIfVPp~~ 84 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGG--K---T-----HLGLPVFNTVKEAKEQT-GATASVIYVPPPF 84 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTT--C---E-----ETTEEEESSHHHHHHHH-CCCEEEECCCHHH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHhcCCeEEeeccCCCC--c---c-----ccCccchhhHHHHHHhc-CCcEEEEecCHHH
Confidence 47989997 9999999999999997755 44433211 0 0 11478899999999864 3999999999997
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHc-CCeEEe
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAEL-GLLYLG 127 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~-g~~~i~ 127 (484)
+.+.+++.+...++ .+|+-+-..++.++.++.+.+.+. +.++++
T Consensus 85 a~dAi~EAi~agI~--liV~ITEgIPv~Dm~~i~~~~~~~~~~~liG 129 (130)
T d1euca1 85 AAAAINEAIDAEVP--LVVCITEGIPQQDMVRVKHRLLRQGKTRLIG 129 (130)
T ss_dssp HHHHHHHHHHTTCS--EEEECCCCCCHHHHHHHHHHHTTCSSCEEEC
T ss_pred HHHHHHHHHhCCCC--EEEEecCCCCHHHHHHHHHHHHhCCCcEEeC
Confidence 78888888877663 466666777777887776666444 455553
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.30 E-value=0.13 Score=45.98 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=33.8
Q ss_pred CCCCeEEEEcc-cHHHHHHHHHHHhCCC--cEEEEeCChhHHHHHH
Q 011501 1 MVQTRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDETV 43 (484)
Q Consensus 1 M~~~~IgiIGl-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~~~ 43 (484)
|+++.|-|.|. +-+|..+|+.|++.|+ .|++..|+.++.+++.
T Consensus 1 M~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~ 46 (250)
T d1yo6a1 1 MSPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELK 46 (250)
T ss_dssp CCCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHH
T ss_pred CcCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHH
Confidence 66656666665 6799999999999996 5777899988876654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=91.21 E-value=0.08 Score=42.34 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=30.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.++.|||.|.+|.-+|..|++.|.+|+++++.+
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 579999999999999999999999999998865
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.93 E-value=0.061 Score=48.43 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=30.5
Q ss_pred CeEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGL-AVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
|||-|.|. |.+|+.++..|.++||+|++.||+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~ 35 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD 35 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence 68999986 9999999999999999999999864
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=90.91 E-value=0.078 Score=47.45 Aligned_cols=41 Identities=15% Similarity=0.178 Sum_probs=35.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
.+|-|||.|.-|...|..|+++|++|.++++++..-..+..
T Consensus 5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~ 45 (253)
T d2gqfa1 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILM 45 (253)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEe
Confidence 46999999999999999999999999999998765444443
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.77 E-value=0.098 Score=46.74 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.9
Q ss_pred CeEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|||.|| | .+-+|.++|+.|++.|++|.+.||+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~ 36 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA 36 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence 467666 5 577999999999999999999998754
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=90.66 E-value=0.65 Score=41.57 Aligned_cols=119 Identities=15% Similarity=0.067 Sum_probs=65.6
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEE-eC----------ChhHHHHHHHHhhhc-CC-C-------CeeecCCHhHH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVY-NR----------TTSKVDETVERAKQE-GN-L-------PLYGFHDPESF 63 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~-dr----------~~~~~~~~~~~~~~~-~~-~-------~~~~~~s~~e~ 63 (484)
++|.|=|.|++|...|+.|.+.|.+|... |. +.+.+.++..+.... .+ . ..... +.+++
T Consensus 37 ~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 115 (255)
T d1bgva1 37 KTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF-PGEKP 115 (255)
T ss_dssp CEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE-ETCCG
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee-chhhc
Confidence 58999999999999999999999987643 42 223322222111000 00 0 01111 22333
Q ss_pred HhhcCCCcEEEEecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEec
Q 011501 64 VHSIQKPRVIIMLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 64 ~~~l~~advIi~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
... .||+++-|-....-..+.++.|... .=++|+...|.+. +.+.....+.++|+.++..
T Consensus 116 ~~~--~~DiliPcA~~~~I~~~~a~~l~a~--~ck~I~EgAN~p~-t~ea~~~ll~~~gI~vvPD 175 (255)
T d1bgva1 116 WGQ--KVDIIMPCATQNDVDLEQAKKIVAN--NVKYYIEVANMPT-TNEALRFLMQQPNMVVAPS 175 (255)
T ss_dssp GGS--CCSEEECCSCTTCBCHHHHHHHHHT--TCCEEECCSSSCB-CHHHHHHHHHCTTCEEECH
T ss_pred ccc--cccEEeeccccccccHHHHHhhhhc--CceEEecCCCCCc-chHHHHHHHHhcCCEEehH
Confidence 332 4899887765553334444454321 1158888888753 3333334456678887643
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=90.59 E-value=0.15 Score=45.22 Aligned_cols=97 Identities=14% Similarity=0.074 Sum_probs=62.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEe------
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIML------ 76 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~------ 76 (484)
.+|-=||+|. ..++..|++.|++|+++|.+++-++.+.+..... +.++.. +.+..++-- -+..|+|+++
T Consensus 39 ~~vLDiGCG~--G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~-~~~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~~ 114 (246)
T d1y8ca_ 39 DDYLDLACGT--GNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ-GLKPRLACQDISNLNI-NRKFDLITCCLDSTNY 114 (246)
T ss_dssp TEEEEETCTT--STTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-TCCCEEECCCGGGCCC-SCCEEEEEECTTGGGG
T ss_pred CeEEEEeCcC--CHHHHHHHHhCCccEeeccchhhhhhcccccccc-Cccceeeccchhhhcc-cccccccceeeeeeec
Confidence 4688889884 2466678889999999999999877665543322 112332 334544321 1235888864
Q ss_pred cCCCchHHHHHHHHhhhcCCCC-EEEecC
Q 011501 77 VKAGSPVDQTIKTLSVYMEKGD-CIIDGG 104 (484)
Q Consensus 77 vp~~~~v~~vl~~l~~~l~~g~-iiId~s 104 (484)
+++......+++.+...|++|- +|+|..
T Consensus 115 ~~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 115 IIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 3344466678888988888764 555554
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=90.59 E-value=0.087 Score=48.93 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=29.9
Q ss_pred eEEEEcccHHHHHHHHHHH-----hCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIA-----EKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~-----~~G~~V~v~dr~~~ 37 (484)
.|.|||.|..|..+|..|+ ++|++|+++++++.
T Consensus 9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~ 46 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 46 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence 6999999999999999996 58999999998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.53 E-value=0.27 Score=40.15 Aligned_cols=32 Identities=19% Similarity=0.260 Sum_probs=29.5
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 35 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 35 (484)
++|-|||.|.+|..-+..|.++|-+|+++.+.
T Consensus 14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 58999999999999999999999999999643
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.37 E-value=0.19 Score=39.73 Aligned_cols=93 Identities=15% Similarity=0.222 Sum_probs=59.8
Q ss_pred CCeEEEEccc-----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCc
Q 011501 3 QTRIGLAGLA-----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPR 71 (484)
Q Consensus 3 ~~~IgiIGlG-----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~ad 71 (484)
.+||-|||.| ..+...++.|.+.|+++.+.|.||+.+ .++++ + +|
T Consensus 4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV-----------------std~d-~------aD 59 (121)
T d1a9xa4 4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV-----------------STDYD-T------SD 59 (121)
T ss_dssp SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS-----------------TTSTT-S------SS
T ss_pred CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh-----------------hcChh-h------cC
Confidence 4689999998 567788899999999999999998752 22222 1 45
Q ss_pred EEEE-ecCCCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEe
Q 011501 72 VIIM-LVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLG 127 (484)
Q Consensus 72 vIi~-~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~ 127 (484)
.+.+ .+. ++.| ..+...-+|..+++-.+. .+...+...|.+.|+..++
T Consensus 60 ~lYfeplt----~e~v-~~Ii~~E~p~~ii~~~GG---Qtalnla~~L~~~gv~iLG 108 (121)
T d1a9xa4 60 RLYFEPVT----LEDV-LEIVRIEKPKGVIVQYGG---QTPLKLARALEAAGVPVIG 108 (121)
T ss_dssp EEECCCCS----HHHH-HHHHHHHCCSEEECSSST---HHHHTTHHHHHHTTCCBCS
T ss_pred ceEEccCC----HHHH-HHHHHHhCCCEEEeehhh---hhHHHHHHHHHHcCCcEEC
Confidence 5544 442 2222 233333456667766654 3555667777777765443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.26 E-value=1.1 Score=39.13 Aligned_cols=122 Identities=14% Similarity=0.064 Sum_probs=73.7
Q ss_pred CeEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee----cCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG----FHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~----~~s~~e~~~~l~~advIi~~v 77 (484)
++|.=+|+|. .-..+|...- .+-.|+++|.++..++.+.+.....+ ++.. ...+..........|+|+..+
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG-~~G~V~aVD~s~~~l~~a~~~a~~~~--~~~~i~~d~~~~~~~~~~~~~vD~i~~d~ 151 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG-WEGKIFGIEFSPRVLRELVPIVEERR--NIVPILGDATKPEEYRALVPKVDVIFEDV 151 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHSSCT--TEEEEECCTTCGGGGTTTCCCEEEEEECC
T ss_pred CEEEEeccCCCHHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHHhcC--CceEEEEECCCcccccccccceEEEEEEc
Confidence 4677787765 3334443222 23479999999999888876543221 1211 112232222223468888888
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEec-------CCCChHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIIDG-------GNEWYENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId~-------st~~~~~~~~~~~~l~~~g~~~i~~ 128 (484)
+...+.+.++..+...|++|-.++-+ ++..+....+-.+.+.+.|+..++.
T Consensus 152 ~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~~~~~~~~~~~v~~~v~~l~~~gf~iie~ 209 (227)
T d1g8aa_ 152 AQPTQAKILIDNAEVYLKRGGYGMIAVKSRSIDVTKEPEQVFREVERELSEYFEVIER 209 (227)
T ss_dssp CSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCTTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred cccchHHHHHHHHHHhcccCCeEEEEEECCccCCCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 88777888888888888887655432 3344555544445556668777664
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=90.10 E-value=0.3 Score=43.99 Aligned_cols=41 Identities=12% Similarity=0.357 Sum_probs=31.3
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEe-CChhHHHHHHHH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYN-RTTSKVDETVER 45 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~d-r~~~~~~~~~~~ 45 (484)
-|+|| |.+-+|.++|+.|+++|++|.+.+ ++.+..+.+.+.
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~ 46 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSAT 46 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHH
Confidence 47888 456799999999999999998865 555555555543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=90.01 E-value=0.27 Score=41.15 Aligned_cols=43 Identities=9% Similarity=-0.017 Sum_probs=35.1
Q ss_pred eEEEE-cccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhh
Q 011501 5 RIGLA-GLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK 47 (484)
Q Consensus 5 ~IgiI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~ 47 (484)
+|.|+ |.|.+|....+.....|.+|++.++++++.+.+.+.+.
T Consensus 31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 68888 55668888888877889999999999999887776553
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=89.84 E-value=0.28 Score=43.23 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCee-ecCCHhHHHhhcCCCcEEEEec-----
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLY-GFHDPESFVHSIQKPRVIIMLV----- 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~-~~~s~~e~~~~l~~advIi~~v----- 77 (484)
.+|-=||+|. | .++..|+++|++|+++|.+++-++.+.+..... +.++. ...+.+++--. +..|+|+++-
T Consensus 43 ~~iLDiGcGt-G-~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~-~~~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~ 118 (251)
T d1wzna1 43 RRVLDLACGT-G-IPTLELAERGYEVVGLDLHEEMLRVARRKAKER-NLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIMY 118 (251)
T ss_dssp CEEEEETCTT-C-HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEESCGGGCCCC-SCEEEEEECSSGGGG
T ss_pred CEEEEeCCCC-C-ccchhhcccceEEEEEeeccccccccccccccc-cccchheehhhhhcccc-cccchHhhhhhhhhc
Confidence 3688899997 4 445678899999999999998877766654322 11222 23344443211 2358777652
Q ss_pred CCCchHHHHHHHHhhhcCCCC-EEEecCC
Q 011501 78 KAGSPVDQTIKTLSVYMEKGD-CIIDGGN 105 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~-iiId~st 105 (484)
.+......+++.+...|++|- ++++..+
T Consensus 119 ~~~~~~~~~L~~~~~~LkpgG~lii~~~~ 147 (251)
T d1wzna1 119 FDEEDLRKLFSKVAEALKPGGVFITDFPC 147 (251)
T ss_dssp SCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHcCCCcEEEEEecc
Confidence 222345677888888887765 5565543
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.57 Score=41.48 Aligned_cols=38 Identities=16% Similarity=0.248 Sum_probs=29.1
Q ss_pred eEEEEccc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 5 RIGLAGLA---VMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 5 ~IgiIGlG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
++-|.|.+ -+|.++|+.|++.|++|++.+|+++..+.+
T Consensus 7 ~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred EEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 44455654 378999999999999999999996654443
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.74 E-value=0.17 Score=42.46 Aligned_cols=23 Identities=13% Similarity=0.276 Sum_probs=20.4
Q ss_pred CeEEEEcccHHHHHHHHHHHhCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKG 26 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G 26 (484)
.+|+++|+|.+|+.+++.|.++.
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~~ 27 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAMK 27 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCC
T ss_pred EEEEEEeCCHHHHHHHHHHHHhH
Confidence 47999999999999999998754
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.69 E-value=0.23 Score=44.50 Aligned_cols=43 Identities=23% Similarity=0.271 Sum_probs=36.0
Q ss_pred CeEEEE-cc-cHHHHHHHHHHHh---CCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLA-GL-AVMGQNLALNIAE---KGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiI-Gl-G~mG~~lA~~L~~---~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
-||+|| |. +-+|.++|+.|++ +|++|.+.+|++++++++.++.
T Consensus 6 gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l 53 (259)
T d1oaaa_ 6 CAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL 53 (259)
T ss_dssp SEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHH
Confidence 478888 54 5799999999986 7999999999999888776543
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=89.59 E-value=0.35 Score=44.92 Aligned_cols=41 Identities=15% Similarity=0.288 Sum_probs=35.7
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVE 44 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~ 44 (484)
++|.|.| .|.+|+.++..|.++||+|.+..|+.++.+.+..
T Consensus 12 k~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~ 53 (342)
T d1y1pa1 12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQK 53 (342)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHH
Confidence 5799996 6999999999999999999999999887766554
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=89.42 E-value=0.14 Score=43.88 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=29.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhC--CCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~--G~~V~v~dr~~ 36 (484)
|||.|||.|..|..+|..|.+. +.+|+++++++
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 6999999999999999999886 45799998764
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=89.23 E-value=0.23 Score=44.64 Aligned_cols=98 Identities=16% Similarity=0.114 Sum_probs=66.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchH
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPV 83 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v 83 (484)
.||++||. + ++...+.+.|.++.++||++.. + .......++++.. ||+||+.=.+ -+
T Consensus 123 ~kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~~-------g-------d~p~~~~~~lLp~---aD~viiTGsT--lv 179 (251)
T d2h1qa1 123 KKVGVVGH--F--PHLESLLEPICDLSILEWSPEE-------G-------DYPLPASEFILPE---CDYVYITCAS--VV 179 (251)
T ss_dssp SEEEEESC--C--TTHHHHHTTTSEEEEEESSCCT-------T-------CEEGGGHHHHGGG---CSEEEEETHH--HH
T ss_pred CEEEEEec--c--hhHHHHHhcCCcEEEEeCCCCC-------C-------CCCchHHHHhhhc---CCEEEEEech--hh
Confidence 58999985 4 6777788899999999999742 1 2234455667766 9999987532 46
Q ss_pred HHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCeEEecc
Q 011501 84 DQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 84 ~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
...++.|+.+.++...|+-.+-+.|-.- . +.+.|+.++..-
T Consensus 180 N~Tl~~LL~~~~~a~~vvl~GPS~p~~P----~-lf~~Gv~~lag~ 220 (251)
T d2h1qa1 180 DKTLPRLLELSRNARRITLVGPGTPLAP----V-LFEHGLQELSGF 220 (251)
T ss_dssp HTCHHHHHHHTTTSSEEEEESTTCCCCG----G-GGGTTCSEEEEE
T ss_pred cCCHHHHHHhCCcCCEEEEECCCcccCH----H-HHhcCCceEeEE
Confidence 6677888888877766665554443211 1 234688777653
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.08 E-value=1.6 Score=39.85 Aligned_cols=33 Identities=30% Similarity=0.393 Sum_probs=27.8
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|+.+| | .+-+|..+|+.|+++|++|.+.|++.+
T Consensus 8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence 56676 4 566999999999999999999988754
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=88.91 E-value=0.16 Score=42.04 Aligned_cols=33 Identities=15% Similarity=0.132 Sum_probs=29.8
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC--cEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF--PISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~--~V~v~dr~~ 36 (484)
+||.|||.|..|..+|..|.+.+. +|+++++++
T Consensus 3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 689999999999999999999885 789998876
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=88.91 E-value=2.6 Score=33.70 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=63.3
Q ss_pred CeEEEE-c--cc---HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLA-G--LA---VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiI-G--lG---~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.||.|| + .| .|...++..|.+.|++|.++|.+....+. ....+..+|.|++..
T Consensus 3 ~Ki~IiY~S~tGnTe~~A~~Ia~~l~~~g~ev~~~~~~~~~~~~---------------------~~~~l~~~d~vi~Gs 61 (152)
T d1e5da1 3 NKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQ---------------------IMSEISDAGAVIVGS 61 (152)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHH---------------------HHHHHHTCSEEEEEC
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHHhhCCCEEEEeecccCChhh---------------------hccchhhCCEEEEec
Confidence 466666 3 34 36777888888899999998876432221 111122289999999
Q ss_pred CCC-----chHHHHHHHHhhhcCCCCEEEecCC-C-ChHHHHHHHHHHHHcCCeEEecc
Q 011501 78 KAG-----SPVDQTIKTLSVYMEKGDCIIDGGN-E-WYENTERRQKAVAELGLLYLGMG 129 (484)
Q Consensus 78 p~~-----~~v~~vl~~l~~~l~~g~iiId~st-~-~~~~~~~~~~~l~~~g~~~i~~p 129 (484)
|.. ..+...++.+...-.++..+.-.++ . .......+.+.+.+.|...+..|
T Consensus 62 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~~~ 120 (152)
T d1e5da1 62 PTHNNGILPYVAGTLQYIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPATP 120 (152)
T ss_dssp CCBTTBCCHHHHHHHHHHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSCC
T ss_pred cccCCccCchhHHHHHHhhccCCCCCEEEEEEeeCCCCccHHHHHHHHHHCCCEEecCc
Confidence 873 3456666655543334554333222 2 33445667778888888776544
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=88.83 E-value=0.29 Score=43.91 Aligned_cols=115 Identities=11% Similarity=0.147 Sum_probs=68.3
Q ss_pred CeEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCC-CCeeec-CCHhHHHhhcCCCcEEEEecCC
Q 011501 4 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGN-LPLYGF-HDPESFVHSIQKPRVIIMLVKA 79 (484)
Q Consensus 4 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~-~~~~~~-~s~~e~~~~l~~advIi~~vp~ 79 (484)
++|.=+|+|. +...||+.+.. +-.|+.+|++++.++.+.+.....+. .++... .+..+.... ...|.|++-+|+
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~~-~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~-~~fD~V~ld~p~ 164 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALNG-KGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISD-QMYDAVIADIPD 164 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHTT-SSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCS-CCEEEEEECCSC
T ss_pred CEEEEeeeeCcHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccccc-ceeeeeeecCCc
Confidence 4677787665 44445554433 34799999999988777665432110 022222 233333221 237999998887
Q ss_pred CchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 80 GSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 80 ~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
+. .+++.+...|++|-.++-.+.. .....+..+.+++.|+.
T Consensus 165 p~---~~l~~~~~~LKpGG~lv~~~P~-i~Qv~~~~~~l~~~gf~ 205 (250)
T d1yb2a1 165 PW---NHVQKIASMMKPGSVATFYLPN-FDQSEKTVLSLSASGMH 205 (250)
T ss_dssp GG---GSHHHHHHTEEEEEEEEEEESS-HHHHHHHHHHSGGGTEE
T ss_pred hH---HHHHHHHHhcCCCceEEEEeCC-cChHHHHHHHHHHCCCc
Confidence 74 3566777778888777643322 24555666667777743
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=88.27 E-value=0.17 Score=47.09 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=34.0
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDET 42 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~ 42 (484)
+||-|.| .|.+|+.++..|.++|++|.+++|+..+...+
T Consensus 9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~ 48 (356)
T d1rkxa_ 9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSL 48 (356)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHH
Confidence 6899997 79999999999999999999999987654443
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=87.59 E-value=0.29 Score=45.97 Aligned_cols=33 Identities=27% Similarity=0.440 Sum_probs=27.1
Q ss_pred eEE-EEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIG-LAG-LAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~Ig-iIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
||. |.| +|.+|+.++..|.++||+|++.||...
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~ 36 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS 36 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 566 556 899999999999999999999998543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=87.48 E-value=1.9 Score=37.87 Aligned_cols=34 Identities=21% Similarity=0.461 Sum_probs=28.5
Q ss_pred EEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhHH
Q 011501 6 IGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSKV 39 (484)
Q Consensus 6 IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~~ 39 (484)
+++| |.+-+|.++|+.|+++|++|++.+|+.++.
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~ 38 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA 38 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence 5566 456699999999999999999999986653
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=87.35 E-value=0.52 Score=42.53 Aligned_cols=114 Identities=14% Similarity=0.074 Sum_probs=66.1
Q ss_pred CeEEEEcccH--HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCC--Ceee-cCCHhHHHhhcCCCcEEEEecC
Q 011501 4 TRIGLAGLAV--MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNL--PLYG-FHDPESFVHSIQKPRVIIMLVK 78 (484)
Q Consensus 4 ~~IgiIGlG~--mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~--~~~~-~~s~~e~~~~l~~advIi~~vp 78 (484)
++|-=+|+|. +...||+.+. .+-+|+.+|.+++.++.+.+.....+ + ++.. ..+..+... ....|.|++-+|
T Consensus 105 ~~VLDiG~GsG~lt~~lA~~~~-~~G~V~~vD~~~~~~~~A~~~~~~~g-~~~~v~~~~~d~~~~~~-~~~~D~V~~d~p 181 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCAVLARAVG-SSGKVFAYEKREEFAKLAESNLTKWG-LIERVTIKVRDISEGFD-EKDVDALFLDVP 181 (266)
T ss_dssp CEEEEECCTTSHHHHHHHHHTT-TTCEEEEECCCHHHHHHHHHHHHHTT-CGGGEEEECCCGGGCCS-CCSEEEEEECCS
T ss_pred CEEEECCCCCCHHHHHHHHHhC-CCcEEEEEeCCHHHHHHHHHHHHHhc-cccCcEEEecccccccc-ccceeeeEecCC
Confidence 4677777665 3344443332 23479999999998877765543221 1 1211 123222211 123799999998
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCCCChHHHHHHHHHHHHcCCe
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGNEWYENTERRQKAVAELGLL 124 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~ 124 (484)
++. .+++++...|++|-.++-.+.. .....+..+.+++.|+.
T Consensus 182 ~p~---~~l~~~~~~LKpGG~lv~~~P~-~~Qv~~~~~~l~~~gF~ 223 (266)
T d1o54a_ 182 DPW---NYIDKCWEALKGGGRFATVCPT-TNQVQETLKKLQELPFI 223 (266)
T ss_dssp CGG---GTHHHHHHHEEEEEEEEEEESS-HHHHHHHHHHHHHSSEE
T ss_pred CHH---HHHHHHHhhcCCCCEEEEEeCc-ccHHHHHHHHHHHCCce
Confidence 874 3566677777777665543322 34556677777777743
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.31 E-value=0.29 Score=45.48 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 1 MVQTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 1 M~~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
|+ +||-|.| .|.+|+.|+..|+++|++|++.|+
T Consensus 1 M~-kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~ 34 (346)
T d1ek6a_ 1 MA-EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN 34 (346)
T ss_dssp CC-SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CC-CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence 55 4898886 699999999999999999999975
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=87.29 E-value=0.59 Score=40.00 Aligned_cols=99 Identities=11% Similarity=0.132 Sum_probs=59.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCe-eecCCHhHHHhhcCCCcEEEEecCC---
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPL-YGFHDPESFVHSIQKPRVIIMLVKA--- 79 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~-~~~~s~~e~~~~l~~advIi~~vp~--- 79 (484)
.+|-=||+|. ..++..|++.|.+|++.|.+++-++.+.+..... +..+ ....+..++...-..-|+|+..---
T Consensus 39 ~~ILDiGcG~--G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~-~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~~ 115 (226)
T d1ve3a1 39 GKVLDLACGV--GGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR-ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHF 115 (226)
T ss_dssp CEEEEETCTT--SHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-TCCCEEEECCTTSCCSCTTCEEEEEEESCGGGC
T ss_pred CEEEEECCCc--chhhhhHhhhhcccccccccccchhhhhhhhccc-cccccccccccccccccCcCceEEEEecchhhC
Confidence 3688899987 3355678889999999999998887766543322 1111 2233444432111235777764311
Q ss_pred -CchHHHHHHHHhhhcCCCC-EEEecCC
Q 011501 80 -GSPVDQTIKTLSVYMEKGD-CIIDGGN 105 (484)
Q Consensus 80 -~~~v~~vl~~l~~~l~~g~-iiId~st 105 (484)
+.....+++++...|+||- ++|...+
T Consensus 116 ~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 116 EPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp CHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 1245567788888888865 4555443
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=87.12 E-value=0.24 Score=44.77 Aligned_cols=33 Identities=15% Similarity=0.328 Sum_probs=30.1
Q ss_pred eEEEEcccHHHHHHHHHHHh-CCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAE-KGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~-~G~~V~v~dr~~~ 37 (484)
.|.|||.|.-|...|..|++ .|++|+++|+.+.
T Consensus 35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~ 68 (278)
T d1rp0a1 35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 68 (278)
T ss_dssp EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence 59999999999999999987 5999999998864
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.02 E-value=0.43 Score=42.21 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=28.3
Q ss_pred eEEEE-c-ccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 5 RIGLA-G-LAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 5 ~IgiI-G-lG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
|+.+| | .+-+|..+|+.|++.|++|.+.+|+.+.
T Consensus 8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~ 43 (237)
T d1uzma1 8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA 43 (237)
T ss_dssp CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch
Confidence 45555 5 4679999999999999999999998654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.98 E-value=0.25 Score=45.77 Aligned_cols=34 Identities=24% Similarity=0.273 Sum_probs=29.0
Q ss_pred CeEE-EE-cccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIG-LA-GLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~Ig-iI-GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
+||+ |. |.|.+|+.++..|.++||+|.+.||.+.
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~ 36 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 36 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence 4785 55 4699999999999999999999998653
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=86.86 E-value=0.47 Score=39.97 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=57.0
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhc--CCCcEEEEecCCCc
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSI--QKPRVIIMLVKAGS 81 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l--~~advIi~~vp~~~ 81 (484)
+|-|.| .|-+|....+.....|.+|+...+++++.+.+.+.+... -+......++.+..+ ++.|+||-++...
T Consensus 34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~---vi~~~~~~~~~~~~~~~~gvD~vid~vgg~- 109 (176)
T d1xa0a2 34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKE---VLAREDVMAERIRPLDKQRWAAAVDPVGGR- 109 (176)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSE---EEECC---------CCSCCEEEEEECSTTT-
T ss_pred EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccce---eeecchhHHHHHHHhhccCcCEEEEcCCch-
Confidence 477887 699999888888889999999999999988877665431 011111222333222 3478888887654
Q ss_pred hHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 82 PVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 82 ~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
... ..+..+.++-.++.++..
T Consensus 110 ~~~----~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 110 TLA----TVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp THH----HHHHTEEEEEEEEECSCC
T ss_pred hHH----HHHHHhCCCceEEEeecc
Confidence 333 334445555566665544
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=86.77 E-value=3.7 Score=32.63 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC-----chHHHHH
Q 011501 13 VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG-----SPVDQTI 87 (484)
Q Consensus 13 ~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~-----~~v~~vl 87 (484)
.|...++..+.+.|++|.++|.+....+ ++...+..+|.||+..|.. ..++..+
T Consensus 18 ~vA~~Ia~~l~~~g~~v~~~~~~~~~~~---------------------~~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l 76 (149)
T d1ycga1 18 KMAHALMDGLVAGGCEVKLFKLSVSDRN---------------------DVIKEILDARAVLVGSPTINNDILPVVSPLL 76 (149)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEGGGSCHH---------------------HHHHHHHHCSEEEEECCCBTTBCCGGGHHHH
T ss_pred HHHHHHHHHHHhcCCeeEEEEccccchH---------------------HHhhhhhhCCeEEEEeecccCCCCHHHHHHH
Confidence 3677788888888999998886543322 2222122289999999864 3567777
Q ss_pred HHHhhhcCCCCEEEecCC-C-ChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHhcc
Q 011501 88 KTLSVYMEKGDCIIDGGN-E-WYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVAAQ 165 (484)
Q Consensus 88 ~~l~~~l~~g~iiId~st-~-~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~~~ 165 (484)
+.+...-.++..+.-.+| . .......+.+.+...|...+..|..- +-..-+++..+.++++-+.++.+
T Consensus 77 ~~l~~~~~~~k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~~----------~~~~P~~~dl~~~~e~g~~ia~k 146 (149)
T d1ycga1 77 DDLVGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGPT----------VQWVPRGEDLQRCYELGRKIAAR 146 (149)
T ss_dssp HHHHHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCCE----------EESSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhccccCCCEEEEEecccCCchhHHHHHHHHHHCCCEEeccceEE----------EcccCCHHHHHHHHHHHHHHHHH
Confidence 777664334544333222 1 22345567778888898877654210 00011456677777777777654
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=86.65 E-value=0.22 Score=44.61 Aligned_cols=73 Identities=14% Similarity=0.222 Sum_probs=47.7
Q ss_pred EEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCCchHHHH
Q 011501 8 LAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAGSPVDQT 86 (484)
Q Consensus 8 iIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~~~v~~v 86 (484)
|-|. +-+|.++|+.|++.|++|.+.+|+.++.+++.+.... . -. +|+ .+.++++++
T Consensus 5 VTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~--------------~-~~---~dv-----~~~~~~~~~ 61 (252)
T d1zmta1 5 VTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET--------------Y-PQ---LKP-----MSEQEPAEL 61 (252)
T ss_dssp ESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH--------------C-TT---SEE-----CCCCSHHHH
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc--------------E-EE---ecc-----CCHHHHHHH
Confidence 4455 4599999999999999999999998887776543221 0 01 342 233456666
Q ss_pred HHHHhhhcCCCCEEEec
Q 011501 87 IKTLSVYMEKGDCIIDG 103 (484)
Q Consensus 87 l~~l~~~l~~g~iiId~ 103 (484)
++++.....+=+++|+.
T Consensus 62 ~~~~~~~~G~iDiLVnN 78 (252)
T d1zmta1 62 IEAVTSAYGQVDVLVSN 78 (252)
T ss_dssp HHHHHHHHSCCCEEEEE
T ss_pred HHHHHHHcCCCCEEEEC
Confidence 66666554444666654
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=86.56 E-value=0.42 Score=42.65 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.6
Q ss_pred CeEEEEcc-cH--HHHHHHHHHHhCCCcEEEEeCChhHHH
Q 011501 4 TRIGLAGL-AV--MGQNLALNIAEKGFPISVYNRTTSKVD 40 (484)
Q Consensus 4 ~~IgiIGl-G~--mG~~lA~~L~~~G~~V~v~dr~~~~~~ 40 (484)
+++-|.|. |. +|.++|+.|+++|.+|++.+|+.++..
T Consensus 7 K~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~ 46 (268)
T d2h7ma1 7 KRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI 46 (268)
T ss_dssp CEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence 45666685 55 999999999999999999999987653
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=86.50 E-value=0.31 Score=41.95 Aligned_cols=31 Identities=13% Similarity=-0.084 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 35 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 35 (484)
.|.|||.|.-|...|..+++.|.+|.+++++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~ 34 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK 34 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence 5889999999999999999999999999986
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=86.34 E-value=1.4 Score=37.19 Aligned_cols=70 Identities=20% Similarity=0.171 Sum_probs=50.8
Q ss_pred CeEEEEc-c-cHHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEe
Q 011501 4 TRIGLAG-L-AVMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIML 76 (484)
Q Consensus 4 ~~IgiIG-l-G~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~ 76 (484)
.||++|| + .++..++...+..-|.++.++.+. ++-++.+.+..... +..+..+.+++++++. +|+|..-
T Consensus 6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~eai~~---aDvVyt~ 81 (185)
T d1dxha2 6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEES-GAKLTLTEDPKEAVKG---VDFVHTD 81 (185)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEEC
T ss_pred CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhcc-CCeEEEEeChhhcccc---ccEEEee
Confidence 4899999 4 589999999999999999998763 33333333221111 2247788999999987 9998876
Q ss_pred c
Q 011501 77 V 77 (484)
Q Consensus 77 v 77 (484)
+
T Consensus 82 ~ 82 (185)
T d1dxha2 82 V 82 (185)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=86.27 E-value=0.87 Score=40.15 Aligned_cols=41 Identities=15% Similarity=0.122 Sum_probs=33.2
Q ss_pred CCeEEEEcc-cHHHHHHHHHHH---hCCCcEEEEeCChhHHHHHH
Q 011501 3 QTRIGLAGL-AVMGQNLALNIA---EKGFPISVYNRTTSKVDETV 43 (484)
Q Consensus 3 ~~~IgiIGl-G~mG~~lA~~L~---~~G~~V~v~dr~~~~~~~~~ 43 (484)
|++|-|.|. .-+|..+|+.|+ +.|+.|++.+|++++.+++.
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~ 46 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE 46 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 456877776 669999999886 57999999999998776654
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.94 E-value=0.3 Score=40.08 Aligned_cols=32 Identities=16% Similarity=0.386 Sum_probs=27.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.||.|||.|..|.-+|..|++ +.+|+++++.+
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~ 32 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP 32 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence 389999999999999999865 78999998754
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=85.92 E-value=1.4 Score=39.16 Aligned_cols=84 Identities=11% Similarity=0.109 Sum_probs=49.4
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC--C-
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA--G- 80 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~--~- 80 (484)
.|-|.| .+-+|..+|+.|++.|.+|.+..|+.++.+.+.+.... .. ...+.+.++-. +
T Consensus 7 ~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~---------------~~---~~~~~~~~~d~~~~~ 68 (254)
T d1sbya1 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAI---------------NP---KVNITFHTYDVTVPV 68 (254)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHH---------------CT---TSEEEEEECCTTSCH
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhh---------------CC---CCCEEEEEeecCCCH
Confidence 344445 45699999999999999998887766654443321110 01 12333333221 2
Q ss_pred chHHHHHHHHhhhcCCCCEEEecCCC
Q 011501 81 SPVDQTIKTLSVYMEKGDCIIDGGNE 106 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiId~st~ 106 (484)
+.++++++.+.....+=+++|+....
T Consensus 69 ~~~~~~~~~~~~~~g~iDilvnnAG~ 94 (254)
T d1sbya1 69 AESKKLLKKIFDQLKTVDILINGAGI 94 (254)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEeCCCC
Confidence 24666677766655555778776543
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.73 E-value=0.35 Score=41.79 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=30.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
.|.|||.|.-|..-|..+++.|.+|.++++.+.
T Consensus 7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~ 39 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK 39 (233)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence 599999999999999999999999999997643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=85.72 E-value=0.55 Score=39.44 Aligned_cols=92 Identities=11% Similarity=0.052 Sum_probs=55.8
Q ss_pred eEEEEcc-cHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecC--C-HhHHHhh--cCCCcEEEEecC
Q 011501 5 RIGLAGL-AVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFH--D-PESFVHS--IQKPRVIIMLVK 78 (484)
Q Consensus 5 ~IgiIGl-G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~--s-~~e~~~~--l~~advIi~~vp 78 (484)
+|-|.|. |.+|...++.....|.+|++..+++++.+.+.+.+... +.... + .+++.+. -...|+||-++.
T Consensus 32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~----vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDA----AFNYKTVNSLEEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSE----EEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhh----hcccccccHHHHHHHHhhcCCCceeEEecC
Confidence 5777777 67888888888888999999999999887777655321 11111 1 1222211 134677777774
Q ss_pred CCchHHHHHHHHhhhcCCCCEEEecCC
Q 011501 79 AGSPVDQTIKTLSVYMEKGDCIIDGGN 105 (484)
Q Consensus 79 ~~~~v~~vl~~l~~~l~~g~iiId~st 105 (484)
. +.++...+.+.++-.++..+.
T Consensus 108 ~-----~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 G-----EFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp H-----HHHHHHGGGEEEEEEEEECCC
T ss_pred c-----hhhhhhhhhccCCCeEEeecc
Confidence 2 133455555656555555543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=85.28 E-value=1.4 Score=37.11 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=57.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeee-cCCHhHHHhhcCCCcEEEEec-----
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYG-FHDPESFVHSIQKPRVIIMLV----- 77 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~-~~s~~e~~~~l~~advIi~~v----- 77 (484)
.+|-=||+| .|. .+..|++.|++|+++|.+++.++.+.+.....+--++.. ..+..+..-. ...|+|+...
T Consensus 32 grvLDiGcG-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~-~~fD~I~~~~~~~~~ 108 (198)
T d2i6ga1 32 GRTLDLGCG-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD-GEYDFILSTVVMMFL 108 (198)
T ss_dssp CEEEEETCT-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC-CCEEEEEEESCGGGS
T ss_pred CcEEEECCC-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccccc-ccccEEEEeeeeecC
Confidence 478889998 343 566788999999999999988876654433221001221 1232222111 1258877633
Q ss_pred CCCchHHHHHHHHhhhcCCCCEEEe
Q 011501 78 KAGSPVDQTIKTLSVYMEKGDCIID 102 (484)
Q Consensus 78 p~~~~v~~vl~~l~~~l~~g~iiId 102 (484)
|. .....+++.+...+++|-+++-
T Consensus 109 ~~-~~~~~~l~~~~~~L~pgG~~~~ 132 (198)
T d2i6ga1 109 EA-QTIPGLIANMQRCTKPGGYNLI 132 (198)
T ss_dssp CT-THHHHHHHHHHHTEEEEEEEEE
T ss_pred CH-HHHHHHHHHHHHHcCCCcEEEE
Confidence 33 3566788888888877765443
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=85.06 E-value=0.22 Score=46.47 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=27.7
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
||||-|.| .|.+|+.|+..|.++|++|.++++
T Consensus 2 ~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~ 34 (346)
T d1oc2a_ 2 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL 34 (346)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence 67999997 799999999999999998666543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=84.71 E-value=0.67 Score=40.26 Aligned_cols=91 Identities=12% Similarity=0.136 Sum_probs=57.2
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCC---C
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKA---G 80 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~---~ 80 (484)
.+|-=||+|. ..++..|++.|++|+++|.+++.++.+.+.+.. .....+.+++--.-..-|+|+.+-.. -
T Consensus 44 ~~vLDiGcG~--G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~-----~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~ 116 (246)
T d2avna1 44 CRVLDLGGGT--GKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-----NVVEAKAEDLPFPSGAFEAVLALGDVLSYV 116 (246)
T ss_dssp CEEEEETCTT--CHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCS-----CEEECCTTSCCSCTTCEEEEEECSSHHHHC
T ss_pred CEEEEECCCC--chhcccccccceEEEEeeccccccccccccccc-----ccccccccccccccccccceeeecchhhhh
Confidence 4677889884 455567788999999999999988877765432 22334444432111235877754211 1
Q ss_pred chHHHHHHHHhhhcCCCCEEE
Q 011501 81 SPVDQTIKTLSVYMEKGDCII 101 (484)
Q Consensus 81 ~~v~~vl~~l~~~l~~g~iiI 101 (484)
...+.+++++...|++|-+++
T Consensus 117 ~d~~~~l~~i~r~Lk~gG~~i 137 (246)
T d2avna1 117 ENKDKAFSEIRRVLVPDGLLI 137 (246)
T ss_dssp SCHHHHHHHHHHHEEEEEEEE
T ss_pred hhHHHHHHHHHhhcCcCcEEE
Confidence 134567788888888776554
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=84.52 E-value=0.38 Score=43.73 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=30.3
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|...|..|+++|.+|+++++.+
T Consensus 18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~ 49 (308)
T d1y0pa2 18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP 49 (308)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 69999999999999999999999999999875
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=84.49 E-value=6 Score=30.72 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEecCCC-------chHHHH
Q 011501 14 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLVKAG-------SPVDQT 86 (484)
Q Consensus 14 mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~vp~~-------~~v~~v 86 (484)
+...+|..|.+.|++|.+++.+. .++.++.+ +|.+|+.+|+. ..++..
T Consensus 15 vA~~ia~~l~~~g~~v~~~~~~~---------------------~~~~~l~~----~~~~i~g~pt~~~g~~p~~~~~~~ 69 (138)
T d5nula_ 15 MAELIAKGIIESGKDVNTINVSD---------------------VNIDELLN----EDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp HHHHHHHHHHHTTCCCEEEEGGG---------------------CCHHHHTT----CSEEEEEECCBTTTBCCTTTHHHH
T ss_pred HHHHHHHHHHhcCCcceeccccc---------------------cccccccc----CCeEEEEEeccCCCCCChHHHHHH
Confidence 45666777777788877777542 13344433 89999988753 235566
Q ss_pred HHHHhhhcCCCCEEEec---CCCChHHHHHHHHHHHHcCCeEEeccCCCCHHhhhcCCccccCCCHHHHHHHHHHHHHHh
Q 011501 87 IKTLSVYMEKGDCIIDG---GNEWYENTERRQKAVAELGLLYLGMGVSGGEEGARYGPSLMPGGSFEAYKHIEDILLKVA 163 (484)
Q Consensus 87 l~~l~~~l~~g~iiId~---st~~~~~~~~~~~~l~~~g~~~i~~pv~gg~~~a~~g~~i~~gg~~~~~~~v~~ll~~i~ 163 (484)
++.+.+.+ +|+.+.-. +...-.....+.+.+...|...+..|+. +-+.+.+..++++.+-+.|+
T Consensus 70 ~~~~~~~~-~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~~~------------~~~~p~e~~~~~~~~g~~lA 136 (138)
T d5nula_ 70 IEEISTKI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETPLI------------VQNEPDEAEQDCIEFGKKIA 136 (138)
T ss_dssp HHHHGGGC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCCEE------------EESSCGGGHHHHHHHHHHHH
T ss_pred HHHhCccC-CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCcEE------------ECCCCcHHHHHHHHHHHHHh
Confidence 66665544 34433322 2222334456777888888876654421 11223455666666666664
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=84.42 E-value=0.31 Score=42.68 Aligned_cols=34 Identities=24% Similarity=0.455 Sum_probs=28.8
Q ss_pred eEEEE--cccHHHHHHHHHHHhCCCcEEEEeCChhH
Q 011501 5 RIGLA--GLAVMGQNLALNIAEKGFPISVYNRTTSK 38 (484)
Q Consensus 5 ~IgiI--GlG~mG~~lA~~L~~~G~~V~v~dr~~~~ 38 (484)
|+++| |.+-+|.++|+.|+++|++|.+.+|+++.
T Consensus 2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~ 37 (241)
T d1uaya_ 2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG 37 (241)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence 45666 45789999999999999999999998653
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.39 E-value=0.4 Score=44.54 Aligned_cols=30 Identities=13% Similarity=0.417 Sum_probs=28.6
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
.+.|||.|.-|..+|.+|+++|++|++.++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa 35 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI 35 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence 689999999999999999999999999985
|
| >d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Ketopantoate reductase PanE domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=84.07 E-value=0.96 Score=35.42 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=44.8
Q ss_pred HHhHHHHHHHHHHHhCCCC--HHHHHHHHHhhccCcchhhhhhhhccccccccCCCCchhHHHhhhhcCCCCchHHHHHH
Q 011501 196 DMQLIAEAYDVLKSVGKLS--NEELQQVFSEWNKGELLSFLIEITADIFGIKDDKGDGYLVDKVLDKTGMKGTGKWTVQQ 273 (484)
Q Consensus 196 ~~~~~~Ea~~l~~~~g~~~--~~~i~~~~~~~~~g~~~s~l~~~~~~~l~~~~~~~~~~~l~~i~~~~~~k~tg~~~~~~ 273 (484)
..+++.|+..++++.| ++ .+...+.+......... ...++..++...+. -.+|.+.. +.++.
T Consensus 37 ~~~l~~E~~~va~a~g-~~~~~~~~~~~~~~~~~~~~~-~~sSM~qD~~~gr~-----tEid~i~G---------~vv~~ 100 (124)
T d1ks9a1 37 IMQICEEVAAVIEREG-HHTSAEDLRDYVMQVIDATAE-NISSMLQDIRALRH-----TEIDYING---------FLLRR 100 (124)
T ss_dssp HHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHHHHTTT-CCCHHHHHHHTTCC-----CSGGGTHH---------HHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHhccCC-CCChHHHHHHcCCc-----chHHHHHH---------HHHHH
Confidence 4578899999999998 65 44444444332221111 12233344443221 24455544 57899
Q ss_pred HHHcCCCcchHHH
Q 011501 274 AADLSVAAPTIES 286 (484)
Q Consensus 274 A~~~gvp~p~~~~ 286 (484)
|+++|+|+|+...
T Consensus 101 a~~~gi~tP~~~~ 113 (124)
T d1ks9a1 101 ARAHGIAVPENTR 113 (124)
T ss_dssp HHHHTCCCHHHHH
T ss_pred HHHhCCCCcHHHH
Confidence 9999999998764
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.04 E-value=0.45 Score=36.97 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=27.2
Q ss_pred CeEEEEcccHHHHHHHHHHH---hCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIA---EKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~---~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.+|.-+|..|. .+|.+|+++++.+
T Consensus 21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 58999999999999996555 4566899998765
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=84.00 E-value=0.48 Score=36.71 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=28.5
Q ss_pred CeEEEEcccHHHHHHHHHHHh---CCCcEEEEeCChh
Q 011501 4 TRIGLAGLAVMGQNLALNIAE---KGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~---~G~~V~v~dr~~~ 37 (484)
.+|.|||.|..|.-+|..|.+ .|.+|+++.+.+.
T Consensus 19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence 589999999999999976654 4889999988653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=83.85 E-value=0.51 Score=40.96 Aligned_cols=32 Identities=19% Similarity=0.311 Sum_probs=30.0
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|...|..+++.|.+|.++++++
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~ 39 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK 39 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58899999999999999999999999999765
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=83.58 E-value=6.9 Score=31.75 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=47.2
Q ss_pred CeEEEEccc-HHHHHHHHHHHhCCCcEEEEeCC-----hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLAGLA-VMGQNLALNIAEKGFPISVYNRT-----TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiIGlG-~mG~~lA~~L~~~G~~V~v~dr~-----~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.+|++||=| ++..+++..+..-|.+|.++.+. ++-.+.+.+..... +..+..+.++.+++.. +|+|..-.
T Consensus 5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~ea~~~---adviy~~~ 80 (163)
T d1pvva2 5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAES-GGSFELLHDPVKAVKD---ADVIYTDV 80 (163)
T ss_dssp CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHH-TCEEEEESCHHHHTTT---CSEEEECC
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcc-cceEEEecCHHHHhhh---ccEEeecc
Confidence 589999964 47788888888899999988643 33333333222111 1136778899998887 99888654
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.43 E-value=0.73 Score=42.46 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=27.5
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
++|-|.| .|.+|+.++..|.+.||+|.+.|+
T Consensus 17 k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~ 48 (341)
T d1sb8a_ 17 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDN 48 (341)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence 4677775 699999999999999999999986
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=83.41 E-value=0.2 Score=42.02 Aligned_cols=31 Identities=6% Similarity=0.191 Sum_probs=26.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 011501 3 QTRIGLAGLAVMGQNLALNIAEKGFPISVYN 33 (484)
Q Consensus 3 ~~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d 33 (484)
+.+|.|||.|..|..+|..|.+.|.+|.+..
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CCCEEEECccHHHHHHHHHHHhcCCceEEEE
Confidence 4579999999999999999999998765543
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.37 E-value=0.54 Score=43.03 Aligned_cols=32 Identities=22% Similarity=0.442 Sum_probs=28.9
Q ss_pred CCeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 3 QTRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 3 ~~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
++||-|.| .|.+|+.++..|+++||+|+++|+
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~ 33 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN 33 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence 36899996 699999999999999999999986
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=83.29 E-value=0.43 Score=40.91 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|...|..+++.|.+|+++++++
T Consensus 5 DvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~ 36 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG 36 (221)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 68999999999999999999999999999764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.15 E-value=0.39 Score=39.89 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=29.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|..|.-+|..|.+.|.+|++..+.+
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence 589999999999999999999999888775544
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=83.13 E-value=2 Score=37.35 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=59.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCC-cEEEEeCC--------hhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEE
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGF-PISVYNRT--------TSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVII 74 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~-~V~v~dr~--------~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi 74 (484)
.||-|+|.|.-|.++|..|.+.+. +++.+|+. ....++.........+ ......++.+++.. +++++
T Consensus 27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~g---~~~~~ 102 (222)
T d1vl6a1 27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITN-PERLSGDLETALEG---ADFFI 102 (222)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSC-TTCCCSCHHHHHTT---CSEEE
T ss_pred cEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhc-chhhhcchHhhccC---cceec
Confidence 589999999999999999998886 68888876 1112222211111000 11234466666665 88776
Q ss_pred EecCCCchHHHHHHHHhhhcCCCCEEEecCCCChH
Q 011501 75 MLVKAGSPVDQTIKTLSVYMEKGDCIIDGGNEWYE 109 (484)
Q Consensus 75 ~~vp~~~~v~~vl~~l~~~l~~g~iiId~st~~~~ 109 (484)
..-..+....+ ....+.+.-+|.-+||-.++
T Consensus 103 g~~~~~~~~~e----~m~~~~~rPIIFpLSNPt~~ 133 (222)
T d1vl6a1 103 GVSRGNILKPE----WIKKMSRKPVIFALANPVPE 133 (222)
T ss_dssp ECSCSSCSCHH----HHTTSCSSCEEEECCSSSCS
T ss_pred cccccccccHH----HHhhcCCCCEEEecCCCccc
Confidence 66544422222 23334567788888887653
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=83.10 E-value=0.49 Score=44.68 Aligned_cols=31 Identities=19% Similarity=0.418 Sum_probs=28.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
|||-|.| .|.+|+.++..|++.||+|+++|-
T Consensus 2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDn 33 (393)
T d1i24a_ 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDN 33 (393)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEec
Confidence 6898886 699999999999999999999983
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=82.83 E-value=1 Score=34.83 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCHHHH
Q 011501 180 GSGNFVKMIHNGIEYGDMQLIAEAYDVLKSVGKLSNEEL 218 (484)
Q Consensus 180 g~g~~~K~v~N~i~~~~~~~~~Ea~~l~~~~g~~~~~~i 218 (484)
|.+..+||+...+..+..+++.|++..+++.| +..+-+
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~G-v~~~l~ 38 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLG-LEEDVL 38 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHH
Confidence 67889999999999999999999999999999 775433
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=82.64 E-value=0.5 Score=39.92 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.-|..-|..+++.|.+|.++++..
T Consensus 6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~ 38 (192)
T d1vdca1 6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM 38 (192)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence 579999999999999999999999999998653
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=82.40 E-value=0.44 Score=43.96 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=31.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCC-cEEEEeCChhHHHH
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGF-PISVYNRTTSKVDE 41 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~-~V~v~dr~~~~~~~ 41 (484)
|||-|.| +|.+|+.++..|+++|+ +|++.|+.......
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~ 40 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR 40 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhh
Confidence 5899996 59999999999999995 89999987654433
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.86 E-value=0.56 Score=40.65 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=29.4
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.|.|||.|.-|...|..+++.|.+|.+++..+
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~ 36 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT 36 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 58899999999999999999999999999653
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.79 E-value=0.59 Score=42.85 Aligned_cols=32 Identities=19% Similarity=0.202 Sum_probs=27.2
Q ss_pred eEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 5 RIGLAG-LAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 5 ~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
++-|.| .|.+|..++..|.++||+|+++||..
T Consensus 3 ~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~ 35 (339)
T d1n7ha_ 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRS 35 (339)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence 444554 69999999999999999999999854
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=81.55 E-value=0.56 Score=43.02 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=30.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
..|.|||.|.-|...|..|+++|++|.+.++.+
T Consensus 24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~ 56 (322)
T d1d4ca2 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP 56 (322)
T ss_dssp CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 369999999999999999999999999999875
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.41 E-value=0.61 Score=37.98 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=26.3
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 10 GLAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 10 GlG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
|.|.+|..+|..|++.|.+|+++++.+.
T Consensus 48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 48 DTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 9999999999999999999999998764
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.37 E-value=0.52 Score=36.30 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=46.8
Q ss_pred CeEEEEccc----------HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEE
Q 011501 4 TRIGLAGLA----------VMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVI 73 (484)
Q Consensus 4 ~~IgiIGlG----------~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advI 73 (484)
++|||+|+- .-...+...|.+.|..|.+||+.-...+ . ..+...+.+++++.+. +|+|
T Consensus 16 k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-----~----~~~~~~~~~l~~~~~~---sDiI 83 (108)
T d1dlja3 16 KVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-----S----EDQSVLVNDLENFKKQ---ANII 83 (108)
T ss_dssp CEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-----T----TCCSEECCCHHHHHHH---CSEE
T ss_pred CEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-----h----ccCCEEEeCHHHHHhh---CCEE
Confidence 469999973 4567788999999999999998754311 0 0135667899999988 9987
Q ss_pred EEecCC
Q 011501 74 IMLVKA 79 (484)
Q Consensus 74 i~~vp~ 79 (484)
|+...+
T Consensus 84 I~~~~~ 89 (108)
T d1dlja3 84 VTNRYD 89 (108)
T ss_dssp ECSSCC
T ss_pred EEcCCc
Confidence 766544
|
| >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: ROO-like flavoprotein TM0755, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.69 E-value=3.3 Score=32.87 Aligned_cols=107 Identities=13% Similarity=0.149 Sum_probs=65.5
Q ss_pred CeEEEE-c--ccH---HHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHhhhcCCCCeeecCCHhHHHhhcCCCcEEEEec
Q 011501 4 TRIGLA-G--LAV---MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKQEGNLPLYGFHDPESFVHSIQKPRVIIMLV 77 (484)
Q Consensus 4 ~~IgiI-G--lG~---mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~l~~advIi~~v 77 (484)
.||.|| | .|+ |...++..|.+.|++|.+++.+... ..++.+....+..+|.|++..
T Consensus 4 ~kv~IiY~S~tGnTe~~A~~i~~~l~~~g~~v~~~~~~~~~------------------~~~~~~~~~~l~~~d~iiigs 65 (148)
T d1vmea1 4 GKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEE------------------RPAISEILKDIPDSEALIFGV 65 (148)
T ss_dssp TEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSC------------------CCCHHHHHHHSTTCSEEEEEE
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc------------------ccchhHhhhhHHHCCEeEEEe
Confidence 466665 3 343 6778888888899999998765321 234445555566699999999
Q ss_pred CCC-----chHHHHHHHHhhhcCCCCEEEecCC-CC-hHHHHHHHHHHHHcCCeEEec
Q 011501 78 KAG-----SPVDQTIKTLSVYMEKGDCIIDGGN-EW-YENTERRQKAVAELGLLYLGM 128 (484)
Q Consensus 78 p~~-----~~v~~vl~~l~~~l~~g~iiId~st-~~-~~~~~~~~~~l~~~g~~~i~~ 128 (484)
|.. ..+...+..+.+.-.+|..+.-.+| .. ......+.+.+...|..+++.
T Consensus 66 pt~~~~~~~~~~~~l~~~~~~~~~~k~~~~fgs~g~~~~a~~~~~~~l~~~G~~~v~~ 123 (148)
T d1vmea1 66 STYEAEIHPLMRFTLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF 123 (148)
T ss_dssp CEETTEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCC-CCHHHHHHTSSCEEEEE
T ss_pred cccCCccCchHHHHHHHHhhcccCCCEEEEEEcCCCccchHHHHHHHHHHcCCcEEee
Confidence 853 2455666666554335554333222 21 223455677788888877653
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=80.67 E-value=0.78 Score=37.93 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=28.9
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNRT 35 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 35 (484)
.|.|||.|..|...|..+++.|.+|.++++.
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence 5889999999999999999999999999864
|
| >d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Thermus aquaticus [TaxId: 271]
Probab=80.59 E-value=0.69 Score=38.63 Aligned_cols=30 Identities=17% Similarity=0.527 Sum_probs=27.7
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEe
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYN 33 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~d 33 (484)
|||||=|+|++|+.+.+.|.+.+++|...|
T Consensus 1 ikigINGfGRIGR~~~R~l~~~~i~iv~IN 30 (168)
T d2g82a1 1 MKVGINGFGRIGRQVFRILHSRGVEVALIN 30 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEC
Confidence 589999999999999999999999988876
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.58 E-value=0.71 Score=42.93 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=28.2
Q ss_pred eEEEEcccHHHHHHHHHHHhCCCcEEEEeC
Q 011501 5 RIGLAGLAVMGQNLALNIAEKGFPISVYNR 34 (484)
Q Consensus 5 ~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr 34 (484)
.|-|||.|.-|..+|..|+++|++|++.++
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa 33 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM 33 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence 467999999999999999999999999987
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.41 E-value=0.56 Score=40.89 Aligned_cols=41 Identities=10% Similarity=0.013 Sum_probs=35.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERA 46 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~~~~~~~~~~~ 46 (484)
.+|-.+|+|. | ..+..|++.|++|+++|.+++.++.+.++.
T Consensus 47 ~rvLd~GCG~-G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 47 LRVFFPLCGK-A-VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CEEEETTCTT-C-THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CEEEEeCCCC-c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 4799999998 3 667888999999999999999998877654
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=80.26 E-value=0.58 Score=40.22 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=29.9
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCC
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRT 35 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~ 35 (484)
.+|-|||.|..|...|..+++.|.+|++++++
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence 46899999999999999999999999999976
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=80.15 E-value=0.76 Score=41.71 Aligned_cols=34 Identities=24% Similarity=0.219 Sum_probs=29.3
Q ss_pred CeEEEEc-ccHHHHHHHHHHHhCCCcEEEEeCChh
Q 011501 4 TRIGLAG-LAVMGQNLALNIAEKGFPISVYNRTTS 37 (484)
Q Consensus 4 ~~IgiIG-lG~mG~~lA~~L~~~G~~V~v~dr~~~ 37 (484)
++|-|.| +|.+|+.++..|.++||+|++++|...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~ 35 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS 35 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence 3677775 699999999999999999999998653
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=80.08 E-value=0.67 Score=38.90 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=30.0
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
.+|.|||.|.-|..-|..+++.|.+|+++++..
T Consensus 6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~ 38 (190)
T d1trba1 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGME 38 (190)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence 369999999999999999999999999998754
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=80.04 E-value=0.8 Score=39.00 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.1
Q ss_pred CeEEEEcccHHHHHHHHHHHhCCCcEEEEeCCh
Q 011501 4 TRIGLAGLAVMGQNLALNIAEKGFPISVYNRTT 36 (484)
Q Consensus 4 ~~IgiIGlG~mG~~lA~~L~~~G~~V~v~dr~~ 36 (484)
..|-|||.|..|...|..+++.|.+|.++++..
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence 368899999999999999999999999998763
|