Citrus Sinensis ID: 011514

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480----
Protein Sequence
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHcHHcHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHEEHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMmalcpgldecSLAIYLSGFQQAIIGLGTLVMMpvignlsdqygrkamltlpltlsiIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLkddvpndddddltrpiiteetegvnqnesnspvkipvckkipsIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFAtpsfrsivskqvgpneqgkaqgcISGISSFanivsplifspltalflskgapfnfpgfsIMCIGLASMVAFIQSLmmshtpassksqnqccla
Flexible Loop (DISEMBL)
mgmekeikTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIiteetegvnqnesnspvkipvckKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMShtpassksqnqccla
Low Complexity Region (SEG)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMltlpltlsiiplailaYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKddvpndddddLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Disordered region (IsUnstruct)
*******KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDV****************************VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG****GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM*****************
Disordered Region (DISOPRED)
******I****HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD*******************NSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV*********GKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS*******************
Disordered Region (DISEMBL)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETE*********PVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM****************
Disordered Region (DISPRO)
**MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVP*******TRPI***ETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH**************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQNQCCLA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	484	2.2.26 [Sep-21-2011]
Q96MC6	490	Hippocampus abundant tran	yes	no	0.700	0.691	0.214	6e-12
P70187	490	Hippocampus abundant tran	yes	no	0.700	0.691	0.214	6e-12
Q5SR56	506	Hippocampus abundant tran	no	no	0.654	0.626	0.216	2e-10
P02982	399	Tetracycline resistance p	yes	no	0.617	0.749	0.211	4e-10
A4IF94	502	Hippocampus abundant tran	no	no	0.654	0.631	0.224	5e-10
Q8CIA9	507	Hippocampus abundant tran	no	no	0.652	0.623	0.207	8e-10
B2RYH9	507	Hippocampus abundant tran	no	no	0.669	0.639	0.209	2e-08
Q07282	405	Tetracycline resistance p	yes	no	0.613	0.733	0.218	1e-07
P51563	393	Tetracycline resistance p	yes	no	0.632	0.778	0.220	9e-07
P02980	401	Tetracycline resistance p	yes	no	0.719	0.867	0.211	2e-06

>sp|Q96MC6|HIAT1_HUMAN Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=HIAT1 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 164/425 (38%), Gaps = 86/425 (20%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVL 365
           L   +G    + LGL    + +         W++                          
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMM-------------------------- 337

Query: 366 LLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV 425
                        +A  A + +     P+  ++VS+    ++QG  QG I+GI    N +
Sbjct: 338 -------------WAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGL 384

Query: 426 SPLIF 430
            P ++
Sbjct: 385 GPALY 389

Homo sapiens (taxid: 9606)

>sp|P70187|HIAT1_MOUSE Hippocampus abundant transcript 1 protein OS=Mus musculus GN=Hiat1 PE=2 SV=3

 Score = 72.8 bits (177), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 91/425 (21%), Positives = 164/425 (38%), Gaps = 86/425 (20%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           +F+  F WG  T     A T V +    P          ++G  Q + GL + +  P+IG
Sbjct: 44  IFLEFFAWGLLT-----APTLVVLHETFP-----KHTFLMNGLIQGVKGLLSFLSAPLIG 93

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD +GRK+ L L +  +  P+ ++  + S  +++A  ++  + A+        +  AY
Sbjct: 94  ALSDVWGRKSFLLLTVFFTCAPIPLM--KISPWWYFAVISVSGVFAVTFS-----VVFAY 146

Query: 133 VADNISERQRASAFGILLGVLSASFVC----GTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           VAD   E +R+ A+G++    +AS V     G    R    +     AT +++L   ++ 
Sbjct: 147 VADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFIL 206

Query: 189 VFLKDDVPND-DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI--PSIRDLICLLRSS 245
           V + + +P          PI  E+ +                KK+   SI  LIC     
Sbjct: 207 VAVPESLPEKMRPASWGAPISWEQAD-----------PFASLKKVGQDSIVLLIC----- 250

Query: 246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL 305
                  +  F S L E G  +SF  +L+    F+    A  + + G+   I+Q + + L
Sbjct: 251 -------ITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSL 303

Query: 306 LAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVL 365
           L   +G    + LGL    + +         W++                          
Sbjct: 304 LMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMM-------------------------- 337

Query: 366 LLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV 425
                        +A  A + +     P+  ++VS+    ++QG  QG I+GI    N +
Sbjct: 338 -------------WAAGAVAAMSSITFPAVSALVSRTADADQQGVVQGMITGIRGLCNGL 384

Query: 426 SPLIF 430
            P ++
Sbjct: 385 GPALY 389

Mus musculus (taxid: 10090)

>sp|Q5SR56|HIAL1_HUMAN Hippocampus abundant transcript-like protein 1 OS=Homo sapiens GN=HIATL1 PE=2 SV=3

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 151/379 (39%), Gaps = 62/379 (16%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 81  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 138

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 139 SVSGVFSVTF-----SVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 193

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 194 GDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGKD 251

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 252 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAMV 297

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLL 351
           G+   ++Q  F+ +L   LG    + LGL    + +        AW++            
Sbjct: 298 GILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMM------------ 345

Query: 352 LSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKA 411
                                      +A    + +     P+  ++VS+    ++QG A
Sbjct: 346 ---------------------------WAAGTVAAMSSITFPAISALVSRNAESDQQGVA 378

Query: 412 QGCISGISSFANIVSPLIF 430
           QG I+GI    N + P ++
Sbjct: 379 QGIITGIRGLCNGLGPALY 397

Homo sapiens (taxid: 9606)

>sp|P02982|TCR1_ECOLX Tetracycline resistance protein, class A OS=Escherichia coli GN=tetA PE=3 SV=2

 Score = 66.6 bits (161), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 148/368 (40%), Gaps = 69/368 (18%)

Query: 69  PVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL 128
           PV+G LSD++GR+ +L + L  + +  AI+A   +  F +  Y  R +  +   G+   +
Sbjct: 61  PVLGALSDRFGRRPVLLVSLAGAAVDYAIMA---TAPFLWVLYIGRIVAGIT--GATGAV 115

Query: 129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
           A AY+AD     +RA  FG +        V G +    +   S        + L      
Sbjct: 116 AGAYIADITDGDERARHFGFMSACFGFGMVAGPVLGGLMGGFSPHAPFFAAAAL------ 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
                    +  + LT   +  E+          P++      + S R         +T+
Sbjct: 170 ---------NGLNFLTGCFLLPES----HKGERRPLRREALNPLASFR-----WARGMTV 211

Query: 249 SQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLA 307
             A +  FF     G + A+ ++ F + +FH++       +   G+  +++Q +    +A
Sbjct: 212 VAALMAVFFIMQLVGQVPAALWVIFGEDRFHWDATTIGISLAAFGILHSLAQAMITGPVA 271

Query: 308 PILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLL 367
             LGE + L LG+ A                           +LL+F TR  ++  +++L
Sbjct: 272 ARLGERRALMLGMIADGTGY----------------------ILLAFATRGWMAFPIMVL 309

Query: 368 KILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP 427
                I M                 P+ ++++S+QV    QG+ QG ++ ++S  +IV P
Sbjct: 310 LASGGIGM-----------------PALQAMLSRQVDEERQGQLQGSLAALTSLTSIVGP 352

Query: 428 LIFSPLTA 435
           L+F+ + A
Sbjct: 353 LLFTAIYA 360

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|A4IF94|HIAL1_BOVIN Hippocampus abundant transcript-like protein 1 OS=Bos taurus GN=HIATL1 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 155/379 (40%), Gaps = 62/379 (16%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++A  
Sbjct: 78  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFAMI 135

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS + 
Sbjct: 136 SISGVFSVTFS-----VIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSASY 190

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP+         Q +  + +K  V K 
Sbjct: 191 GDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGKD 248

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   + A  + + 
Sbjct: 249 --STILLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAMV 294

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLL 351
           G+   ++Q +F+  L   LG    + LGL                        ++F+L  
Sbjct: 295 GILSIVAQTVFLTSLMRSLGNKNTVLLGLGF----------------------QMFQLAW 332

Query: 352 LSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKA 411
             F ++  +     ++  + SI                   P+  ++VS+    N+QG A
Sbjct: 333 YGFGSQAWMMWAAGIVAAVSSI-----------------TFPAVSTLVSQNADSNQQGVA 375

Query: 412 QGCISGISSFANIVSPLIF 430
           QG I+GI    N + P ++
Sbjct: 376 QGIITGIRGLCNGLGPALY 394

Bos taurus (taxid: 9913)

>sp|Q8CIA9|HIAL1_MOUSE Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3

 Score = 65.5 bits (158), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 147/380 (38%), Gaps = 64/380 (16%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++         + Y+
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMRINP-----WWYF 137

Query: 112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
            + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS  
Sbjct: 138 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSAN 194

Query: 171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCK 230
                  +V+ L A     F+   VP    + + RP          Q +  + +K  V K
Sbjct: 195 YGDSLVVLVATLVALLDICFILIAVPESLSEKI-RPASWGAQISWKQADPFASLK-KVGK 252

Query: 231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
              S   LIC            +  F S L E G  +SF  +L+    F   +    + +
Sbjct: 253 D--STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAM 298

Query: 291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLL 350
            G+   ++Q +F+  L   LG    + LGL    + +        AW++           
Sbjct: 299 VGILSIVAQTVFLSKLMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMM----------- 347

Query: 351 LLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK 410
                                       +A    + +     P+  +++S+    ++QG 
Sbjct: 348 ----------------------------WAAGTVAAMSSITFPAVSALISRNAESDQQGV 379

Query: 411 AQGCISGISSFANIVSPLIF 430
           AQG ++GI    N + P ++
Sbjct: 380 AQGIVTGIRGLCNGLGPALY 399

Mus musculus (taxid: 10090)

>sp|B2RYH9|HIAL1_RAT Hippocampus abundant transcript-like protein 1 OS=Rattus norvegicus GN=Hiatl1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 81/386 (20%), Positives = 151/386 (39%), Gaps = 62/386 (16%)

Query: 52  LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYY 111
           ++G  Q + GL + +  P+IG LSD +GRK  L   +  +  P+ ++  R S  +++   
Sbjct: 83  MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLM--RISPWWYFGMI 140

Query: 112 ALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTS 171
           ++  + ++        +  AYVAD   E +R++A+G +    +AS V       +LS+  
Sbjct: 141 SVSGVFSVTF-----SVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSNY 195

Query: 172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKK 231
                 +V+ + A     F+   VP    + + RP          Q +  + +K  V K 
Sbjct: 196 GDSLVVLVATVVALLDICFILVAVPESLPEKI-RPASWGAQISWKQADPFASLK-KVGKD 253

Query: 232 IPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA 291
             S   LIC            +  F S L E G  +SF  +L+    F   +    + + 
Sbjct: 254 --STVLLIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMV 299

Query: 292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLL 351
           G+   ++Q +F+  L   LG    + LGL    + +        AW++            
Sbjct: 300 GILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMM------------ 347

Query: 352 LSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKA 411
                                      +A    + +     P+  +++S+    ++QG A
Sbjct: 348 ---------------------------WAAGTVAAMSSITFPAVSALISRNAESDQQGVA 380

Query: 412 QGCISGISSFANIVSPLIFSPLTALF 437
           QG I+GI    N + P ++  +  LF
Sbjct: 381 QGIITGIRGLCNGLGPALYGFIFYLF 406

Rattus norvegicus (taxid: 10116)

>sp|Q07282|TCR5_ECOLX Tetracycline resistance protein, class E OS=Escherichia coli GN=tetA PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/371 (21%), Positives = 154/371 (41%), Gaps = 74/371 (19%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           ++  P++G  SD+ GR+ +L L L  + +  A++A   + S  +  Y  R +  +   G+
Sbjct: 55  VIFAPLLGRWSDRIGRRPVLLLSLLGATLDYALMA---TASVVWVLYLGRLIAGI--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQAATIVSM 181
              +A + +AD   E  R   FG++        + G +   F   LS  + F  A  ++ 
Sbjct: 110 TGAVAASTIADVTPEESRTHWFGMMGACFGGGMIAGPVIGGFAGQLSVQAPFMFAAAING 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
           LA   + +F+  +  N +        +++E +    NE+ S           SIR++I  
Sbjct: 170 LAF-LVSLFILHETHNANQ-------VSDELKNETINETTS-----------SIREMISP 210

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGLAGTISQL 300
           L          +V FF     G + A+ ++ F + +F ++       + + GL   + Q 
Sbjct: 211 L-------SGLLVVFFIIQLIGQIPATLWVLFGEERFAWDGVMVGVSLAVFGLTHALFQG 263

Query: 301 LFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQI 360
           L    +A  LGE K +++G+ A    +F                      LL+ IT+  +
Sbjct: 264 LAAGFIAKHLGERKAIAVGILADGCGLF----------------------LLAVITQSWM 301

Query: 361 SVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS 420
              VLLL     I +                 P+ + I+S +VG   QG+ QG ++ ++ 
Sbjct: 302 VWPVLLLLACGGITL-----------------PALQGIISVRVGQVAQGQLQGVLTSLTH 344

Query: 421 FANIVSPLIFS 431
              ++ PL+F+
Sbjct: 345 LTAVIGPLVFA 355

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

>sp|P51563|TCR7_VIBAN Tetracycline resistance protein, class G OS=Vibrio anguillarum GN=tetA PE=3 SV=1

 Score = 55.5 bits (132), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 147/386 (38%), Gaps = 80/386 (20%)

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           +V  P++G LSD YGR+ +L   L  + +   I+A   S    +  Y  R ++ +   G+
Sbjct: 55  VVFAPMLGQLSDSYGRRPVLLASLAGAAVDYTIMA---SAPVLWVLYIGRLVSGV--TGA 109

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSA---FQAATIVSM 181
              +A + +AD+  E  RA  FG +     A  + G      L   SA   F AA +++ 
Sbjct: 110 TGAVAASTIADSTGEGSRARWFGYMGACYGAGMIAGPALGGMLGGISAHAPFIAAALLNG 169

Query: 182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL 241
            A     +FLK+               T  + G     +  PV+         I+  + L
Sbjct: 170 FAFLLACIFLKE---------------THHSHG----GTGKPVR---------IKPFVLL 201

Query: 242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGT--ISQ 299
                     A+ A F  +   G   + L+ +  +  F  N     + +A    T  I Q
Sbjct: 202 RLDDALRGLGALFAVFFIIQLIGQVPAALWVIYGEDRFQWNTATVGLSLAAFGATHAIFQ 261

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQ 359
                 L+  LGE + L  G+ A                           +LL+F T+  
Sbjct: 262 AFVTGPLSSRLGERRTLLFGMAADGTG----------------------FVLLAFATQGW 299

Query: 360 ISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS 419
           +   +LLL     + M                 P+ ++++S  V  N+QG  QG ++ ++
Sbjct: 300 MVFPILLLLAAGGVGM-----------------PALQAMLSNNVSSNKQGALQGTLTSLT 342

Query: 420 SFANIVSPLIFSPLTALFLSKGAPFN 445
           + ++I  PL F   TAL+ +    +N
Sbjct: 343 NLSSIAGPLGF---TALYSATAGAWN 365

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Vibrio anguillarum (taxid: 55601)

>sp|P02980|TCR2_ECOLX Tetracycline resistance protein, class B OS=Escherichia coli GN=tetA PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 171/430 (39%), Gaps = 82/430 (19%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A+  L  ++  P +G +SD++GR+ +L L L  + +   +LA+  ++   Y    L  +T
Sbjct: 48  ALYALMQVIFAPWLGKMSDRFGRRPVLLLSLIGASLDYLLLAFSSALWMLYLGRLLSGIT 107

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---LSTTSAFQ 174
                G+   +A + +AD  S  QR   FG L        + G +   F   +S  S F 
Sbjct: 108 -----GATGAVAASVIADTTSASQRVKWFGWLGASFGLGLIAGPIIGGFAGEISPHSPFF 162

Query: 175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS 234
            A +++++    +  + ++     D+ D         TE   + +SNS V I + K +P 
Sbjct: 163 IAALLNIVTFLVVMFWFRETKNTRDNTD---------TEVGVETQSNS-VYITLFKTMPI 212

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQAS-FLYFLKAQFHFNKNQFADLMLIAGL 293
           +                 ++ +FS    G + A+ ++ F + +F +N       +   GL
Sbjct: 213 L-----------------LIIYFSAQLIGQIPATVWVLFTENRFGWNSMMVGFSLAGLGL 255

Query: 294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLS 353
             ++ Q      +A   GE   + LG        FI   S                  L+
Sbjct: 256 LHSVFQAFVAGRIATKWGEKTAVLLG--------FIADSS--------------AFAFLA 293

Query: 354 FITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG 413
           FI+   +   VL+L     I                 A P+ + ++S Q   ++QG  QG
Sbjct: 294 FISEGWLVFPVLILLAGGGI-----------------ALPALQGVMSIQTKSHQQGALQG 336

Query: 414 CISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASM-VAFIQSLMMSHTP 472
            +  +++   ++ PL+F    A+  +   P  + G+ I  IGLA   +  + S+    TP
Sbjct: 337 LLVSLTNATGVIGPLLF----AVIYNHSLPI-WDGW-IWIIGLAFYCIIILLSMTFMLTP 390

Query: 473 ASSKSQNQCC 482
            +  S+ +  
Sbjct: 391 QAQGSKQETS 400

Resistance to tetracycline by an active tetracycline efflux. This is an energy-dependent process that decreases the accumulation of the antibiotic in whole cells. This protein functions as a metal-tetracycline/H(+) antiporter.

Escherichia coli (taxid: 562)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
225428113	439	PREDICTED: hippocampus abundant transcri	0.880	0.970	0.644	1e-161
224105113	442	predicted protein [Populus trichocarpa]	0.884	0.968	0.608	1e-158
224083179	447	predicted protein [Populus trichocarpa]	0.880	0.953	0.589	1e-156
255539072	442	tetracycline transporter, putative [Rici	0.894	0.979	0.596	1e-152
118486381	450	unknown [Populus trichocarpa]	0.882	0.948	0.583	1e-152
225459764	442	PREDICTED: hippocampus abundant transcri	0.900	0.986	0.585	1e-151
356517952	432	PREDICTED: hippocampus abundant transcri	0.882	0.988	0.572	1e-150
356509042	432	PREDICTED: hippocampus abundant transcri	0.882	0.988	0.570	1e-150
357467111	454	Hippocampus abundant transcript-like pro	0.888	0.947	0.534	1e-146
356574133	443	PREDICTED: hippocampus abundant transcri	0.896	0.979	0.566	1e-146

>gi|225428113|ref|XP_002280708.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|297744560|emb|CBI37822.3| unnamed protein product [Vitis vinifera]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 303/470 (64%), Positives = 347/470 (73%), Gaps = 44/470 (9%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L+HLFVTV L  F+  +V+PAITDVTM ALCPG DECSLAIYLSGFQQAIIGL
Sbjct: 1   MEK-LAGLTHLFVTVLLGSFSAFIVIPAITDVTMSALCPGKDECSLAIYLSGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM PVIGNLSD+YGRKA+LT+P+ LSIIPLAILAY R+ + FYAY+ +RTLTAMV E
Sbjct: 60  GTVVMTPVIGNLSDEYGRKALLTIPMALSIIPLAILAYSRTTTSFYAYFVIRTLTAMVGE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSINCLALAYVADNISE QRASAFG+L GV SA+FVCGTLAARFLST S FQ AT+VSM+
Sbjct: 120 GSINCLALAYVADNISEGQRASAFGVLSGVASAAFVCGTLAARFLSTASTFQVATLVSMI 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YMRVFLK+  P  D        + ++  G++ ++ NS  KI   KKIPS+ DLI LL
Sbjct: 180 ATVYMRVFLKETFPKGDSSQ----ALLKKEPGMSPDDGNSSEKIQTFKKIPSVGDLISLL 235

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +     SQAAVV FF+GL+EGG+QAS LYFLKA+FHFNKNQFAD+MLI G+ GTISQLLF
Sbjct: 236 KCRAAFSQAAVVVFFNGLAEGGLQASLLYFLKARFHFNKNQFADIMLIVGVMGTISQLLF 295

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV 362
           MPLLAP + E KLLS+GLF  C N+F+ SI+WS W                         
Sbjct: 296 MPLLAPRVSEEKLLSIGLFMGCTNIFLNSIAWSFW------------------------- 330

Query: 363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA 422
                         VPYA  A +   VFA P  RSI SKQVGPNEQGKAQGCISGISS A
Sbjct: 331 --------------VPYAIAALAAFAVFANPCVRSIASKQVGPNEQGKAQGCISGISSSA 376

Query: 423 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
            I+SPLIFSPLTALFLS+GAPF FPGFSIMCIG ASM+AFIQS M+   P
Sbjct: 377 QIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIAFIQSTMIRAVP 426

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105113|ref|XP_002313691.1| predicted protein [Populus trichocarpa] gi|222850099|gb|EEE87646.1| predicted protein [Populus trichocarpa]

 Score =  565 bits (1456), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 286/470 (60%), Positives = 348/470 (74%), Gaps = 42/470 (8%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK    L HLFVTVFL  F ++MV+PA+TDVTM+A+CPG DECSLAIYL+GFQQA IG+
Sbjct: 1   MEK-FTELIHLFVTVFLSTFGSLMVLPAVTDVTMVAVCPGQDECSLAIYLTGFQQASIGM 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GT+VM+P+IGNLSDQYGRKA+LTLP+TLSIIPL ILAY R+  FFYAYYALRTLTAM+CE
Sbjct: 60  GTVVMLPLIGNLSDQYGRKALLTLPMTLSIIPLVILAYSRTTGFFYAYYALRTLTAMICE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GSI+CLALAYVADN+ ERQR S FGIL G+ +A+ VCGTLAARFLST   FQ A ++SML
Sbjct: 120 GSIDCLALAYVADNVLERQRTSVFGILSGITTAALVCGTLAARFLSTALTFQVAALLSML 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YMR+FL++ +P    ++LT+PI+    +   Q++ + P K  V KKIPSI+ +I LL
Sbjct: 180 AAVYMRIFLEESLPQ--SENLTQPILKSGQDDHCQDDGDLPRKPMVSKKIPSIQAIISLL 237

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT SQAA+VAFF  LS GG+QAS +Y+LKA+FHF+KNQ+ADLML+ G++G  SQLLF
Sbjct: 238 KSSVTFSQAAIVAFFHSLSYGGLQASIMYYLKARFHFSKNQYADLMLLVGVSGMASQLLF 297

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV 362
           MPLLAP++ E KLL++GL     N  + S++ SAW                         
Sbjct: 298 MPLLAPLVAEEKLLAIGLLGGIANALLYSVACSAW------------------------- 332

Query: 363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA 422
                         VPYATT FSV  VF  P  RSIVSKQ+GPNEQGKAQGCISGI S A
Sbjct: 333 --------------VPYATTIFSVFAVFIPPCLRSIVSKQIGPNEQGKAQGCISGIISLA 378

Query: 423 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
           NI+SPLI+SPLTALFLS+ APFNFPGF  +CIG A M+AF QSL++   P
Sbjct: 379 NIISPLIYSPLTALFLSEDAPFNFPGFIFVCIGFAIMIAFFQSLLIRAAP 428

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083179|ref|XP_002306959.1| predicted protein [Populus trichocarpa] gi|222856408|gb|EEE93955.1| predicted protein [Populus trichocarpa]

 Score =  557 bits (1436), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 279/473 (58%), Positives = 351/473 (74%), Gaps = 47/473 (9%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           K +  LSHLF+T+FL  F+ +MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGLGT
Sbjct: 2   KTLSGLSHLFITIFLHNFSAVMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP+IGN+SD+YGRKA+LT+PL+L I+P AILAY R+ +FFYAYY ++TL AMVCEGS
Sbjct: 62  LVMMPLIGNMSDKYGRKALLTVPLSLVIVPSAILAYSRTRNFFYAYYVVKTLIAMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E +RASAFGIL G+ S++FVCG L+ RFLST S FQ +  V++ + 
Sbjct: 122 VPCLALAYVADNVPEGRRASAFGILSGIASSAFVCGNLSTRFLSTASTFQVSASVAIASL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP-----VCKKIPSIRDLI 239
            YMR FL+D +    D+ LT PI+T   +   + +  +  +IP     + K  PS+ D++
Sbjct: 182 VYMRFFLQDSI---IDEQLTAPILTSNGKPKGKGKDYATNEIPSKNVQIFKSAPSLEDML 238

Query: 240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ 299
           CLL+SSVTLSQAAVVAFF  L+E G+ AS LY+LKA+FHFNK+QFADLM+I G+AGT+SQ
Sbjct: 239 CLLKSSVTLSQAAVVAFFYSLAEVGLHASLLYYLKARFHFNKDQFADLMVITGIAGTLSQ 298

Query: 300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQ 359
           L+ MP+LAP LGEA+LL++GLF  C+++F+ SI+W+ W                      
Sbjct: 299 LVLMPILAPALGEARLLAVGLFFTCVHVFLYSIAWTFW---------------------- 336

Query: 360 ISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS 419
                            VPY    FSVL+VF+ P  RSIVSKQVG  EQGKAQGCISGIS
Sbjct: 337 -----------------VPYVAAMFSVLIVFSQPCMRSIVSKQVGSCEQGKAQGCISGIS 379

Query: 420 SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
           SFAN++SPL+FSPLTALFLS+ APF+FPGFSIMC+G ASM+AFIQSLM+   P
Sbjct: 380 SFANVISPLLFSPLTALFLSERAPFHFPGFSIMCVGFASMIAFIQSLMIRIAP 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539072|ref|XP_002510601.1| tetracycline transporter, putative [Ricinus communis] gi|223551302|gb|EEF52788.1| tetracycline transporter, putative [Ricinus communis]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 284/476 (59%), Positives = 352/476 (73%), Gaps = 43/476 (9%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD+YGRKA+LT+P++L++IPLA LAY R+  FFYAYY ++TLTAMVCE
Sbjct: 60  GTLVMMPLVGNLSDKYGRKALLTIPMSLTVIPLATLAYSRTTYFFYAYYVMKTLTAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CLALAYVADN+ E +RASAFGIL G+ S++FVCGTL+ RFLST S FQ +  ++++
Sbjct: 120 GSVHCLALAYVADNVPEARRASAFGILSGIGSSAFVCGTLSTRFLSTASTFQVSASMAVV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           A  YM+VFL+D +    D +LT PII+     V     NS     V + +PS+ D+ICLL
Sbjct: 180 AIVYMKVFLQDSIV---DKNLTTPIISNGKGKVYVQIENSSENEQVFRTMPSLEDMICLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           +SSVT +QAA+VAFF  LSE G+ AS +Y+LKA+FHFNKNQFADLM+I+G+AGTISQLL 
Sbjct: 237 KSSVTFTQAAIVAFFINLSEVGLHASLMYYLKARFHFNKNQFADLMVISGIAGTISQLLL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV 362
           MPLLAP LGEA+LLS+GLF  CI+MF+ SI+WS W                         
Sbjct: 297 MPLLAPALGEARLLSVGLFFTCIHMFLYSIAWSFW------------------------- 331

Query: 363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA 422
                         VPYA    S+L VF+ P  R+IVSKQVG  EQGKAQG +SG+ S A
Sbjct: 332 --------------VPYAAALLSILFVFSQPCLRTIVSKQVGACEQGKAQGFVSGLGSLA 377

Query: 423 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASSKSQ 478
           N+VSPL+FSPLTALFLS+ APF+FPGFSIMC+G ASM+A IQS+MM   P  S  +
Sbjct: 378 NVVSPLVFSPLTALFLSERAPFHFPGFSIMCVGFASMIALIQSMMMRVAPPISNER 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486381|gb|ABK95031.1| unknown [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/478 (58%), Positives = 350/478 (73%), Gaps = 51/478 (10%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  LSHLF+T+FL  F+T MV+PAITDVTM ALCPG DECSLAIYL+GFQQAIIGL
Sbjct: 1   MEK-LSGLSHLFMTIFLHNFSTFMVIPAITDVTMSALCPGRDECSLAIYLTGFQQAIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLV MP+IGN+SD+YGRKA+LT+P++L I+P AILAY R+ +FFYAYY +RTL AMVCE
Sbjct: 60  GTLVTMPLIGNMSDKYGRKALLTVPMSLIIVPSAILAYSRTRNFFYAYYVVRTLMAMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS+ CLALAYVADN+ E +RAS FGIL G+ S++FVCG L+ RFLST+S FQ + +V++ 
Sbjct: 120 GSVQCLALAYVADNVPESRRASTFGILSGIASSAFVCGNLSTRFLSTSSTFQVSALVAIA 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------ESNSPVK-IPVCKKIPS 234
           A  YMR FL++ +    D+ L+ PI+T +  G  +            P K + V K  PS
Sbjct: 180 ALVYMRFFLQESI---IDEQLSTPILTYKGNGKGKGKANAACFAHEIPSKNVQVFKSAPS 236

Query: 235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA 294
           + D++CLL+SSVTLSQAAVVAFF  L+E G+ AS +Y+LKAQFHF+K+QFA LM+I+G+A
Sbjct: 237 LEDMLCLLKSSVTLSQAAVVAFFYSLAEVGLHASLMYYLKAQFHFSKDQFAVLMVISGIA 296

Query: 295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF 354
           GT+SQL+ MPLL P LGEA+LL++GLF  C+++F+ SI+W+ W                 
Sbjct: 297 GTVSQLVIMPLLTPALGEARLLAVGLFFTCVHVFLYSIAWTFW----------------- 339

Query: 355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC 414
                                 VPY  + FS+L VF+ P  RSIVSKQVG  EQGKAQGC
Sbjct: 340 ----------------------VPYVASMFSLLFVFSQPCMRSIVSKQVGSCEQGKAQGC 377

Query: 415 ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
           ISGISSFAN++SPL+FSPLTALFLS+ APF FPGFSIMC+G ASM+AFIQSLMM   P
Sbjct: 378 ISGISSFANVISPLVFSPLTALFLSERAPFPFPGFSIMCVGFASMIAFIQSLMMRTAP 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459764|ref|XP_002284761.1| PREDICTED: hippocampus abundant transcript 1 protein [Vitis vinifera] gi|302141709|emb|CBI18912.3| unnamed protein product [Vitis vinifera]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 281/480 (58%), Positives = 349/480 (72%), Gaps = 44/480 (9%)

Query: 3   MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL 62
           MEK +  L HLF+TVFL+ FAT MV+PAITDVTM ALCPG DECS+AIYL+GFQQ IIGL
Sbjct: 1   MEK-LSGLRHLFMTVFLFNFATFMVIPAITDVTMAALCPGRDECSIAIYLTGFQQVIIGL 59

Query: 63  GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE 122
           GTLVMMP++GNLSD YGRKA+LT+P+ L+IIPLAILA+ RS +FFYAY+ L+TLT+MVCE
Sbjct: 60  GTLVMMPLVGNLSDMYGRKALLTIPMCLTIIPLAILAWSRSRNFFYAYFVLKTLTSMVCE 119

Query: 123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
           GS++CL LAYVADNI E +RASAFG+L GV S++FVCGTL+ARFL T+S FQ A  V+ +
Sbjct: 120 GSVHCLTLAYVADNIPEIRRASAFGVLSGVGSSAFVCGTLSARFLKTSSTFQVAASVAAV 179

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
           AA YM++FL D V  D   D     I E+   V   +  S    PV K +PS+ D++ LL
Sbjct: 180 AAVYMKLFLPDSVIKDGVLDRA---ILEQKPCVIHLDGESAQDSPVFKSMPSLDDMLSLL 236

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
           ++S T ++AA+VAFFS L + G+  S +Y+LKA+FHFNK+QFADLM+I+G+AGTISQL+ 
Sbjct: 237 QTSSTFTKAAIVAFFSNLGDVGLHTSLMYYLKARFHFNKHQFADLMMISGIAGTISQLVL 296

Query: 303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV 362
           MP+LAP +GE KLL++GL  +C +MF+ SI+WS W                         
Sbjct: 297 MPILAPTIGEEKLLAIGLLFSCSHMFLYSIAWSFW------------------------- 331

Query: 363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA 422
                         VPYA   FS+L+VFA P  RSI SKQVGP+EQGK QGCISGISSFA
Sbjct: 332 --------------VPYAAAMFSILIVFAPPCIRSIASKQVGPSEQGKVQGCISGISSFA 377

Query: 423 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA-SSKSQNQC 481
           ++VSPL F+PLTALFLS GAPFNFPGFSIMCIG ASM+AF+QSL +   P  S+K    C
Sbjct: 378 HLVSPLAFTPLTALFLSDGAPFNFPGFSIMCIGFASMIAFLQSLTIRAAPPISNKKVGNC 437

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517952|ref|XP_003527649.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 268/468 (57%), Positives = 341/468 (72%), Gaps = 41/468 (8%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+ VFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMAVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LT+P+ L+IIP+ ILAY R+  FFY YY  + L +M+CEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTVPMILTIIPVGILAYSRTKKFFYVYYVFKILISMICEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CL LAYVADNI E  R++AFGIL G+ SA+FVCGTL+ARFLST   FQ +T+++++ A
Sbjct: 122 VPCLGLAYVADNIPESGRSTAFGILSGIASAAFVCGTLSARFLSTALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D     DD  L  PII++E   +++       K  + K + SI DL   L S
Sbjct: 182 LYMQFFLRDSA--IDDKHLYTPIISQENPIISKVNGKLESKKHLFKALRSIEDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTITQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHV 364
           +LAPILGEA+LLS+GLF  CI+MF+ SI+WS+                            
Sbjct: 300 ILAPILGEARLLSVGLFFHCIHMFLYSIAWSSL--------------------------- 332

Query: 365 LLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI 424
                       VPYA+  FS+L VF+ P  RSIVSKQ GP+EQGKAQGCISGI S A+I
Sbjct: 333 ------------VPYASAMFSILFVFSHPCIRSIVSKQAGPHEQGKAQGCISGICSIAHI 380

Query: 425 VSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
           VSPL+FSPLTALFLS+ APF+FPGFSIMCIG ASM++ +QS+M+   P
Sbjct: 381 VSPLVFSPLTALFLSERAPFDFPGFSIMCIGFASMISLVQSMMLRVVP 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509042|ref|XP_003523261.1| PREDICTED: hippocampus abundant transcript-like protein 1-like [Glycine max]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 267/468 (57%), Positives = 343/468 (73%), Gaps = 41/468 (8%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
            ++  LSHLF+TVFL  F+  MVVPAITDVTM ALCPG DECSLAIY++GFQQA+IGLGT
Sbjct: 2   DKLYGLSHLFMTVFLHNFSMFMVVPAITDVTMAALCPGQDECSLAIYITGFQQAMIGLGT 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           LVMMP++GNLSD+YGRKA+LTLP+ L+IIP+ ILAY R+  FFY YY  + L +MVCEGS
Sbjct: 62  LVMMPLLGNLSDKYGRKAILTLPMILTIIPVGILAYSRTKKFFYVYYVFKILISMVCEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
           + CLALAYVADN+ E  R++ FGIL G+ SA+FVC TL+ARFLS+   FQ +T+++++ A
Sbjct: 122 VPCLALAYVADNVPESGRSTVFGILSGIGSAAFVCATLSARFLSSALTFQVSTLIAVIGA 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YM+ FL+D V   DD  L  PII++    +++   N   K  + K + SI+DL   L S
Sbjct: 182 LYMQFFLRDSV--IDDKHLYTPIISQGNPIISKVNGNLESKKHLLKALRSIKDLTSFLNS 239

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S+T++QAA+VAFF+ L++ G+  S LYFLKAQFHF+KNQFADLM+I+G+AGT+SQLL MP
Sbjct: 240 SLTINQAAIVAFFNSLADVGLHGSLLYFLKAQFHFDKNQFADLMVISGIAGTVSQLLLMP 299

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHV 364
           +LAPILGE +LLS+GLF  C++MF+ S++WS+                            
Sbjct: 300 ILAPILGETRLLSVGLFFHCVHMFLYSMAWSSL--------------------------- 332

Query: 365 LLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI 424
                       VPYA+  FS+L VF+ P  RSIVSK+ GP+EQGKAQGCISGI S A+I
Sbjct: 333 ------------VPYASAMFSILYVFSHPCIRSIVSKEAGPHEQGKAQGCISGICSIAHI 380

Query: 425 VSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP 472
           VSPL+FSPLTALFLS+ APF+FPGFSIMCIG ASM++F+QSLM+   P
Sbjct: 381 VSPLVFSPLTALFLSEKAPFDFPGFSIMCIGFASMISFVQSLMLRVAP 428

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357467111|ref|XP_003603840.1| Hippocampus abundant transcript-like protein [Medicago truncatula] gi|355492888|gb|AES74091.1| Hippocampus abundant transcript-like protein [Medicago truncatula]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/492 (53%), Positives = 341/492 (69%), Gaps = 62/492 (12%)

Query: 3   MEK-EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAI-- 59
           MEK  +  LSHLF+TVFL   +T MV PAITDVTM ALCPG DECS+AIYL+GFQQA+  
Sbjct: 1   MEKLNMYGLSHLFMTVFLHNLSTFMVQPAITDVTMAALCPGQDECSIAIYLTGFQQAVRY 60

Query: 60  ------------------IGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR 101
                             IG+GTLVMMP++G+LSD+YGRKA+LTLP+TL IIPL ILAY 
Sbjct: 61  IVSPIYLNILHSFSKLTMIGMGTLVMMPILGDLSDKYGRKAILTLPMTLMIIPLGILAYS 120

Query: 102 RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT 161
           R+ +FFY YY  + +  M+C+G + CLALAYVADN+ E +R+SAFG+L G+ S++FVCGT
Sbjct: 121 RTKTFFYVYYVFKIIINMICDGCVPCLALAYVADNVPEGRRSSAFGVLSGIGSSAFVCGT 180

Query: 162 LAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESN 221
           +AARFLS    FQ +T V++L A YM++FL+D V   D++ L  PII++    + +    
Sbjct: 181 VAARFLSAAQTFQVSTFVAVLGAVYMQIFLRDSVA--DENQLYTPIISQGKPPIAKINGK 238

Query: 222 SPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK 281
           S   +P+ K + S+RD+   L SS  ++QA++VAFFS L++ G+  S +Y+LKA+FHF+K
Sbjct: 239 SKANMPLLKALSSLRDITSFLNSSKIITQASIVAFFSNLADVGLHGSMMYYLKARFHFDK 298

Query: 282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKI 341
           N FADLM+I+G+AGT+SQL  MP+ AP LGEA+LLS+GLF  C++MFI SI+WS+W    
Sbjct: 299 NHFADLMIISGIAGTVSQLFLMPIFAPTLGEARLLSIGLFFHCVHMFIYSIAWSSW---- 354

Query: 342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK 401
                                              VPYA   FS+L VF+ P  RSIVSK
Sbjct: 355 -----------------------------------VPYAAAMFSILFVFSQPCIRSIVSK 379

Query: 402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA 461
           QV P EQG+AQGCISGI S A+IVSPL FSPLTALFLS+ APFNFPGFSIMCIG+ASMV+
Sbjct: 380 QVDPREQGRAQGCISGICSIAHIVSPLAFSPLTALFLSEKAPFNFPGFSIMCIGIASMVS 439

Query: 462 FIQSLMMSHTPA 473
           F+QS+M+   P+
Sbjct: 440 FVQSMMLRVVPS 451

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574133|ref|XP_003555206.1| PREDICTED: hippocampus abundant transcript 1 protein-like [Glycine max]

 Score =  524 bits (1350), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 272/480 (56%), Positives = 339/480 (70%), Gaps = 46/480 (9%)

Query: 5   KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGT 64
           + +  L HLFVT+F+ GF  ++V+PAITDVTM ALCPG D+CSLAIYLSGFQQA+ G+G+
Sbjct: 2   EGLGGLGHLFVTMFVSGFGGVIVLPAITDVTMAALCPGQDQCSLAIYLSGFQQAMAGVGS 61

Query: 65  LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS 124
           +VM P+IGNLSD+YGRKA+LTLPLT+S+IP  ILAY R   FFYAYY ++TL AM  EGS
Sbjct: 62  VVMTPLIGNLSDRYGRKALLTLPLTVSVIPQVILAYSRDTQFFYAYYVVKTLAAMAGEGS 121

Query: 125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAA 184
            +CLALAYVAD + + +R SAFGIL GV SASFV GTLAARFLST   FQ A+++SM+A 
Sbjct: 122 FHCLALAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVASVLSMVAL 181

Query: 185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
            YMR+FLKD VP      L +P++ E  E  ++++S SP      KK+PS+ DLICLLR 
Sbjct: 182 VYMRIFLKDSVPG---GALRQPLLKEVEEPCDEDDS-SPRATGTFKKLPSLGDLICLLRC 237

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMP 304
           S T SQAA+V+FF+ L++GG+ A  LY+LKA+F FNKNQFADL++I G+  T++QL FMP
Sbjct: 238 SPTFSQAAMVSFFNSLADGGLMAVLLYYLKARFQFNKNQFADLLMITGIGATLAQLFFMP 297

Query: 305 LLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHV 364
           +L P++GE KLLS GL  +CIN+F+ SI+W+AW                           
Sbjct: 298 ILVPVIGEEKLLSTGLLISCINVFVYSIAWTAW--------------------------- 330

Query: 365 LLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI 424
                       VPYA    SV  VF  PS  SI SKQVGP EQG  QGC+S ISSFANI
Sbjct: 331 ------------VPYALAGCSVFAVFVRPSLCSIASKQVGPTEQGMVQGCLSAISSFANI 378

Query: 425 VSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP--ASSK-SQNQC 481
           ++PLIFSPLTALFLS+ APF FPGFS+MC+GLA MVAF QSL++   P  A  K S N+C
Sbjct: 379 IAPLIFSPLTALFLSEEAPFYFPGFSLMCLGLALMVAFFQSLIIRAVPPIAGGKISSNRC 438

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	484
TAIR|locus:2039450	456	AT2G16990 "AT2G16990" [Arabido	0.694	0.736	0.478	1.5e-106
TAIR|locus:2039440	461	AT2G16980 [Arabidopsis thalian	0.679	0.713	0.451	1.8e-97
TAIR|locus:2039430	446	MEE15 "maternal effect embryo	0.657	0.713	0.411	1.7e-90
TAIR|locus:2157592	282	AT5G42210 "AT5G42210" [Arabido	0.371	0.638	0.417	6e-32
UNIPROTKB|Q5SR56	506	HIATL1 "Hippocampus abundant t	0.545	0.521	0.224	2.9e-12
UNIPROTKB|A4IF94	502	HIATL1 "Hippocampus abundant t	0.545	0.525	0.224	3.9e-12
UNIPROTKB|Q0C4X1	417	tetA "Tetracycline-efflux tran	0.181	0.211	0.284	5.9e-09
TIGR_CMR|SPO_A0431	399	SPO_A0431 "tetracycline resist	0.161	0.195	0.316	6e-09
MGI|MGI:1913881	507	Hiatl1 "hippocampus abundant t	0.398	0.380	0.220	1.8e-08
UNIPROTKB|F1LX71	470	Hiatl1 "Hippocampus abundant t	0.545	0.561	0.214	4e-08

TAIR|locus:2039450 AT2G16990 "AT2G16990" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.5e-106, Sum P(2) = 1.5e-106
 Identities = 165/345 (47%), Positives = 213/345 (61%)

Query:     3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIG 61
             ME  I  L H+  TVFL  FA  MVVP ITDVT+ A+C G D+ CSLA+YL+GFQQ  IG
Sbjct:     1 MEDGIGGLRHMLATVFLSAFAGFMVVPVITDVTVAAVCSGPDDSCSLAVYLTGFQQVAIG 60

Query:    62 LGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVC 121
             +GT++MMPVIGNLSD+YG K +                YRR I FFY +Y  + LT+MVC
Sbjct:    61 MGTMIMMPVIGNLSDRYGIKTILTLPMCLSIVPPVILGYRRDIKFFYVFYISKILTSMVC 120

Query:   122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSM 181
             EG+++CLA AYVA NI    R SAFGIL G+ + + + GTL ARFL     FQ + I   
Sbjct:   121 EGTVDCLAYAYVAVNIHGSTRISAFGILAGIKTIAGLFGTLVARFLPIALTFQVSAISFF 180

Query:   182 LAAAYMRVFLKXXXXXXXXXXLTRPIITEET-EGVNQNE------SNSPVKIPVC-KKIP 233
             +   YMRVFLK          L      +E  + +N         ++ P+K  V  KK  
Sbjct:   181 VGLVYMRVFLKEKLNDDEDDDLHHGTYHQEDHDSINTTMLAEPILNDRPIKTQVFHKKYS 240

Query:   234 SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGL 293
             S++D+I L+++S    QA VV FFS  S+ GM+++FLYFLKA+F F+K QFADL+L+  +
Sbjct:   241 SLKDMISLMKTSTIFFQALVVTFFSSFSDSGMESAFLYFLKARFGFDKKQFADLLLLITI 300

Query:   294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV 338
              G+ISQL  +P  A  +GE KLLS GLF   INM I SISW+ WV
Sbjct:   301 VGSISQLFVLPRFASAIGECKLLSTGLFMEFINMAIVSISWAPWV 345

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2039440 AT2G16980 [Arabidopsis thaliana (taxid:3702)]

 Score = 700 (251.5 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
 Identities = 154/341 (45%), Positives = 202/341 (59%)

Query:    10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGLGTLVMM 68
             L HL VTVFL G A  ++ P +TDVT+ A+C GLD+ CSLA+YL+G QQ  +G+GT+VMM
Sbjct:     9 LRHLLVTVFLSGLAEYLIRPVMTDVTVAAVCSGLDDSCSLAVYLTGVQQVTVGMGTMVMM 68

Query:    69 PVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCEGSINCL 128
             PVIGNLSD+YG KAM                YRR  +FFYA+Y ++TL  MVC+G+I+CL
Sbjct:    69 PVIGNLSDRYGIKAMLTLPMCLSVLPPAILGYRRDTNFFYAFYVIKTLFDMVCQGTIDCL 128

Query:   129 ALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMR 188
             A AYVA N+   +R S FGIL GV S S VC +L+ARFLS  S FQ A I   +   YMR
Sbjct:   129 ANAYVAKNVHGTKRISMFGILAGVSSISGVCASLSARFLSIASTFQVAAISLFIGLVYMR 188

Query:   189 VFLKXXXXXXXXXXLTRPIITEETEGVNQNES----------NSPVKIPVCK-KIPSIRD 237
             VFLK                    + V+              ++P K  V   K  S +D
Sbjct:   189 VFLKERLQDADDDDEADSGGCRSHQEVHNGGDLKMLTEPILRDAPTKTHVFNSKYSSWKD 248

Query:   238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI 297
             ++ L+ +S  L QA VV FF+  SE G  ++ +YFLKA+F FNKN FA+L L+  + G+I
Sbjct:   249 MVSLINNSTILIQALVVTFFATFSESGRGSALMYFLKARFGFNKNDFAELFLLVTIIGSI 308

Query:   298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV 338
             SQL  +P L+  +GE K+LS GL     N    S++WS WV
Sbjct:   309 SQLFILPTLSSTIGERKVLSTGLLMEFFNATCLSVAWSPWV 349

GO:0005215 "transporter activity" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2039430 MEE15 "maternal effect embryo arrest 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
 Identities = 144/350 (41%), Positives = 195/350 (55%)

Query:     4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE-CSLAIYLSGFQQAIIGL 62
             E  +  L HL  TVFL GF+  +V P +TDVT+ A+C GL+E CSLA+YL+G +Q  +GL
Sbjct:     3 EYRLGELRHLLTTVFLSGFSEFLVKPVMTDVTVAAVCSGLNETCSLAVYLTGVEQVTVGL 62

Query:    63 GTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYYALRTLTAMVCE 122
             GT+VMMPVIGNLSD+YG K +                YRR  +FFYA+Y  + L  M   
Sbjct:    63 GTMVMMPVIGNLSDRYGIKTLLTLPMCLSILPPAILAYRRDTNFFYAFYITKILFDM--- 119

Query:   123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSML 182
                        A N+  R+R S FG+L GV S S VC T +AR L   S FQ A I    
Sbjct:   120 -----------AKNVCGRKRISMFGVLAGVRSISGVCATFSARLLPIASIFQVAAISFFF 168

Query:   183 AAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNES------------NSPVKIPVC- 229
                YMRVFLK                 + T G N ++             ++P KI +  
Sbjct:   169 GLVYMRVFLKERLHDDDEDDCDED---DNTSGRNHHDGGDLTMLAEPILRDAPTKIHIVL 225

Query:   230 -KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM 288
               K  S++D++ L+++S  L Q  VV FF+  ++ GMQ++FLYFLKA+F FNKN FA+L+
Sbjct:   226 NTKYSSLKDMVSLIKNSTILVQTLVVTFFATFAQSGMQSAFLYFLKARFGFNKNDFAELI 285

Query:   289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV 338
             L+  + G+ISQL  +P L   +GE ++LS GL    +N    S+SWSAWV
Sbjct:   286 LLVTIIGSISQLFILPKLVSAIGERRVLSTGLLMDSVNAACLSVSWSAWV 335

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2157592 AT5G42210 "AT5G42210" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 78/187 (41%), Positives = 113/187 (60%)

Query:   179 VSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL 238
             + +L+  YMR+FL           L  PI+  E       E     +  + + I  + ++
Sbjct:    23 MGILSTLYMRLFLPDSIRDNS---LGAPIVINEKLSSPLLEDCPGHRNRIFRAIRLVHEM 79

Query:   239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS 298
               L+RSSV L Q A+V+FFS L+E G+ AS +Y+LKA+FHFNK+QFADLM+I G +G+IS
Sbjct:    80 ASLMRSSVPLFQVAMVSFFSSLAEAGLHASSMYYLKAKFHFNKDQFADLMIIVGASGSIS 139

Query:   299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV---IKIF-FNKVFKLLLLSF 354
             QLLFMP+L P L E +LLS+GLF  C +MF+  ++WS+WV     IF    +F    +  
Sbjct:   140 QLLFMPVLVPALKEERLLSIGLFFGCAHMFLLCVAWSSWVPYMAAIFALFSIFPSSCMRS 199

Query:   355 ITRKQIS 361
             I  KQ++
Sbjct:   200 IVSKQVA 206

GO:0003674 "molecular_function" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q5SR56 HIATL1 "Hippocampus abundant transcript-like protein 1" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 2.9e-12, Sum P(3) = 2.9e-12
 Identities = 65/289 (22%), Positives = 117/289 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    81 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 135

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   136 AMISVSGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 192

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   193 YGDSLVVLVATVVALLDICFILVAVPESLPEKM-RPVSWGAQISWKQADPFASLK-KVGK 250

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   251 DSTVL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIAAFIAM 296

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI 339
              G+   ++Q  F+ +L   LG    + LGL    + +        AW++
Sbjct:   297 VGILSIVAQTAFLSILMRSLGNKNTVLLGLGFQMLQLAWYGFGSQAWMM 345

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|A4IF94 HIATL1 "Hippocampus abundant transcript-like protein 1" [Bos taurus (taxid:9913)]

 Score = 138 (53.6 bits), Expect = 3.9e-12, Sum P(3) = 3.9e-12
 Identities = 65/289 (22%), Positives = 116/289 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    78 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 132

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
             A+ +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS +
Sbjct:   133 AMISISGVF---SVTFSVIFAYVADVTQEHERSTAYGWVSATFAASLVSSPAIGAYLSAS 189

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP+         Q +  + +K  V K
Sbjct:   190 YGDSLVVLVATVVALLDICFILLAVPESLPEKM-RPLSWGARISWKQADPFASLK-KVGK 247

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
                 +  LIC            +  F S L E G  +SF  +L+    F   + A  + +
Sbjct:   248 DSTIL--LIC------------ITVFLSYLPEAGQYSSFFLYLRQVIGFGSIKIAAFIAM 293

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI 339
              G+   ++Q +F+  L   LG    + LGL      +        AW++
Sbjct:   294 VGILSIVAQTVFLTSLMRSLGNKNTVLLGLGFQMFQLAWYGFGSQAWMM 342

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q0C4X1 tetA "Tetracycline-efflux transporter" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 109 (43.4 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
 Identities = 25/88 (28%), Positives = 42/88 (47%)

Query:   379 YATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL 438
             Y    FS L     P+  +++S    P+ QG+ QG  S +++   I+ PLI S     F 
Sbjct:   315 YLIIPFSALGGVTMPAANALMSSLTPPDAQGELQGAASSLNALGMIIGPLIMSGALFSFS 374

Query:   439 SKGAPFNFPGFSIMCIGLASMVAFIQSL 466
              + AP  F G + +   + + +AF+  L
Sbjct:   375 REDAPLQFGGAAFLLAAILTALAFLPFL 402

GO:0008493 "tetracycline transporter activity" evidence=ISS

GO:0015904 "tetracycline transport" evidence=ISS

GO:0046677 "response to antibiotic" evidence=ISS

TIGR_CMR|SPO_A0431 SPO_A0431 "tetracycline resistance protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 113 (44.8 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
 Identities = 25/79 (31%), Positives = 44/79 (55%)

Query:   393 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIM 452
             P+ ++I+S+ V  ++QG  QG +S + + + IVSPL+ + + A F    AP   PG   +
Sbjct:   319 PALQAIMSRSVADDQQGALQGVMSAVHALSMIVSPLLMASVFARFTGPQAPIYLPGAPFL 378

Query:   453 CIGLASMVAFIQSLMMSHT 471
              + LA M A +   + + T
Sbjct:   379 -VALALMAAGLVIFLRTRT 396

GO:0015520 "tetracycline:hydrogen antiporter activity" evidence=ISS

GO:0015904 "tetracycline transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

MGI|MGI:1913881 Hiatl1 "hippocampus abundant transcript-like 1" [Mus musculus (taxid:10090)]

 Score = 109 (43.4 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
 Identities = 46/209 (22%), Positives = 83/209 (39%)

Query:   131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAAYMRVF 190
             AYVAD   E +R++A+G +    +AS V       +LS         +V+ L A     F
Sbjct:   155 AYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSANYGDSLVVLVATLVALLDICF 214

Query:   191 LKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ 250
             +           + RP        ++  +++    +   KK+   +D      S+V L  
Sbjct:   215 ILIAVPESLSEKI-RP--ASWGAQISWKQADPFASL---KKVG--KD------STVLL-- 258

Query:   251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL 310
               +  F S L E G  +SF  +L+    F   +    + + G+   ++Q +F+  L   L
Sbjct:   259 ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAMVGILSIVAQTVFLSKLMRSL 318

Query:   311 GEAKLLSLGLFAACINMFICSISWSAWVI 339
             G    + LGL    + +        AW++
Sbjct:   319 GNKNTVLLGLGFQMLQLAWYGFGSQAWMM 347

GO:0005215 "transporter activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|F1LX71 Hiatl1 "Hippocampus abundant transcript-like protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 128 (50.1 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
 Identities = 62/289 (21%), Positives = 118/289 (40%)

Query:    52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMXXXXXXXXXXXXXXXXYRRSISFFYAYY 111
             ++G  Q + GL + +  P+IG LSD +GRK                      IS ++ Y+
Sbjct:    46 MNGLIQGVKGLLSFLSAPLIGALSDVWGRKPFLLGTVFFTCFPIPLMR----ISPWW-YF 100

Query:   112 ALRTLTAMVCEGSIN-CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTT 170
              + +++ +    S+   +  AYVAD   E +R++A+G +    +AS V       +LS+ 
Sbjct:   101 GMISVSGVF---SVTFSVIFAYVADFTQEHERSTAYGWVSATFAASLVSSPAIGTYLSSN 157

Query:   171 SAFQAATIVSMLAAAYMRVFLKXXXXXXXXXXLTRPIITEETEGVNQNESNSPVKIPVCK 230
                    +V+ + A     F+           + RP        ++  +++    +   K
Sbjct:   158 YGDSLVVLVATVVALLDICFILVAVPESLPEKI-RP--ASWGAQISWKQADPFASL---K 211

Query:   231 KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLI 290
             K+   +D      S+V L    +  F S L E G  +SF  +L+    F   +    + +
Sbjct:   212 KVG--KD------STVLL--ICITVFLSYLPEAGQYSSFFLYLRQVIGFGSVKIVAFIAM 261

Query:   291 AGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI 339
              G+   ++Q +F+  L   LG    + LGL    + +        AW++
Sbjct:   262 VGILSILAQTVFLSKLMRSLGNKNTVLLGLGFQILQLAWYGFGAQAWMM 310

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00036173001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (439 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00033966001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (470 aa)			•						0.483
	GSVIVG00023334001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (476 aa)			•						0.473
	GSVIVG00033971001	SubName- Full=Chromosome undetermined scaffold_71, whole genome shotgun sequence; (488 aa)			•						0.459

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	484
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	2e-08
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-05
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	6e-04

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 68/327 (20%), Positives = 114/327 (34%), Gaps = 41/327 (12%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+       L     E  L +           LG  +  P+ G
Sbjct: 1   LFLAAFLAGLGRSLLGPALPLYLAEDLGISPTEIGLLL-------TAFSLGYALAQPLAG 53

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L + L L  + L +L +  S+        L      +  G++   A A 
Sbjct: 54  RLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVL----QGLGGGALFPAAAAL 109

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLST----TSAFQAATIVSMLAAAYMR 188
           +AD     +R  A G+L          G L    L++     +AF    I+++LAA    
Sbjct: 110 IADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILALLAAVLAA 169

Query: 189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTL 248
           + L    P              E++     E      +P  K +     L  LL      
Sbjct: 170 LLLPRPPP--------------ESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLL------ 209

Query: 249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP 308
                 A            ++L   +     +      L+ +AGL G I +LL   L   
Sbjct: 210 ------ALLLFGFAFFALLTYLPLYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDR 263

Query: 309 ILGEAKLLSLGLFAACINMFICSISWS 335
           +    +LL   L      + +  +S +
Sbjct: 264 LGRRRRLLLALLLLILAALGLALLSLT 290

Length = 346

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 35/173 (20%), Positives = 71/173 (41%), Gaps = 12/173 (6%)

Query: 13  LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIG 72
           LF+  FL G    ++ PA+  +         ++  L+   +G   +   LG  +   + G
Sbjct: 4   LFLGFFLSGLDRGLLSPALPLL--------AEDLGLSASQAGLIVSAFSLGYALGSLLAG 55

Query: 73  NLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY 132
            LSD++GR+ +L L L L  +   +LA+  S+        L      +  G++   A A 
Sbjct: 56  YLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFL----LGLGGGALYPAAAAL 111

Query: 133 VADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAATIVSMLAAA 185
           +A+    ++R  A G+         + G L    L+ +  ++   ++  +   
Sbjct: 112 IAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGL 164

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 39.9 bits (94), Expect = 6e-04
 Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 58  AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLT 117
           A   LG L+  P+ G L+D++GRK +L + L + ++  A+ A   +I+       L+   
Sbjct: 5   AGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFG 64

Query: 118 AMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQA 175
           A     +      A +AD     +R  A G++   ++   + G      L+    ++A
Sbjct: 65  AAFALVAGA----ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	484
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
PRK11646	400	multidrug resistance protein MdtH; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK03699	394	putative transporter; Provisional	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK10504	471	putative transporter; Provisional	100.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK12382	392	putative transporter; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
PRK11652	394	emrD multidrug resistance protein D; Provisional	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
PRK15011	393	sugar efflux transporter B; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.98
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.98
PRK03893	496	putative sialic acid transporter; Provisional	99.98
TIGR00898	505	2A0119 cation transport protein.	99.98
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.98
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.98
PRK11043	401	putative transporter; Provisional	99.97
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.97
KOG2615	451	consensus Permease of the major facilitator superf	99.97
PRK11010	491	ampG muropeptide transporter; Validated	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.97
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
KOG0569	485	consensus Permease of the major facilitator superf	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.97
TIGR00901	356	2A0125 AmpG-related permease.	99.96
KOG2532	466	consensus Permease of the major facilitator superf	99.96
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.96
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.95
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.95
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.95
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.95
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.95
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.94
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.94
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.94
KOG0254	513	consensus Predicted transporter (major facilitator	99.93
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.93
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.93
KOG2533	495	consensus Permease of the major facilitator superf	99.93
PRK10429	473	melibiose:sodium symporter; Provisional	99.93
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.92
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.92
PRK09669	444	putative symporter YagG; Provisional	99.92
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.92
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.92
PRK09848	448	glucuronide transporter; Provisional	99.91
TIGR00805	633	oat sodium-independent organic anion transporter.	99.91
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	99.91
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.91
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.91
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.91
PF13347	428	MFS_2: MFS/sugar transport protein	99.9
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.9
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.89
COG2211	467	MelB Na+/melibiose symporter and related transport	99.88
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.87
PRK11462	460	putative transporter; Provisional	99.87
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.86
PTZ00207	591	hypothetical protein; Provisional	99.86
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.85
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.84
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.83
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.71
KOG2563	480	consensus Permease of the major facilitator superf	99.67
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.64
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.6
PRK10054	395	putative transporter; Provisional	99.58
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.55
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.53
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.51
PRK10642	490	proline/glycine betaine transporter; Provisional	99.51
KOG3626	735	consensus Organic anion transporter [Secondary met	99.5
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.5
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.5
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.48
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.48
TIGR00900	365	2A0121 H+ Antiporter protein.	99.46
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.45
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.45
PRK10489	417	enterobactin exporter EntS; Provisional	99.44
PRK09874	408	drug efflux system protein MdtG; Provisional	99.43
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	99.43
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.43
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.42
PRK12382	392	putative transporter; Provisional	99.42
PRK11663	434	regulatory protein UhpC; Provisional	99.42
PRK03545	390	putative arabinose transporter; Provisional	99.42
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.41
PRK09528	420	lacY galactoside permease; Reviewed	99.41
PRK10504	471	putative transporter; Provisional	99.41
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.4
PRK10091	382	MFS transport protein AraJ; Provisional	99.39
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.39
PRK03633	381	putative MFS family transporter protein; Provision	99.38
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.38
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.37
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.37
TIGR00891	405	2A0112 putative sialic acid transporter.	99.37
PRK11043	401	putative transporter; Provisional	99.37
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.37
PRK15011	393	sugar efflux transporter B; Provisional	99.37
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.36
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.36
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.36
PRK03699	394	putative transporter; Provisional	99.36
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.34
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.33
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.32
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.32
TIGR00893	399	2A0114 d-galactonate transporter.	99.32
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.32
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.31
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.31
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.31
TIGR00895	398	2A0115 benzoate transport.	99.3
PLN00028	476	nitrate transmembrane transporter; Provisional	99.3
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.3
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.29
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.27
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.27
KOG0637	498	consensus Sucrose transporter and related proteins	99.27
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.27
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.26
PRK03893	496	putative sialic acid transporter; Provisional	99.26
PRK09705	393	cynX putative cyanate transporter; Provisional	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.26
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.25
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.22
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.22
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	99.22
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.22
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.21
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.21
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.2
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.18
KOG3762	618	consensus Predicted transporter [General function	99.17
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.16
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.15
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.14
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.14
PRK09952	438	shikimate transporter; Provisional	99.14
PRK11902	402	ampG muropeptide transporter; Reviewed	99.14
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.13
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.13
PRK10133	438	L-fucose transporter; Provisional	99.13
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.09
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	99.09
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.08
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.06
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.05
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.05
PRK11010	491	ampG muropeptide transporter; Validated	99.05
TIGR00898	505	2A0119 cation transport protein.	99.04
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.04
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.02
TIGR00901	356	2A0125 AmpG-related permease.	99.02
TIGR00805	633	oat sodium-independent organic anion transporter.	99.02
KOG2615	451	consensus Permease of the major facilitator superf	99.01
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.99
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.98
PRK15075	434	citrate-proton symporter; Provisional	98.97
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.96
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.96
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.94
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.94
KOG3810	433	consensus Micronutrient transporters (folate trans	98.91
PTZ00207	591	hypothetical protein; Provisional	98.9
KOG2532	466	consensus Permease of the major facilitator superf	98.88
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.86
KOG0569	485	consensus Permease of the major facilitator superf	98.81
PRK09848	448	glucuronide transporter; Provisional	98.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	98.77
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.76
PF13347	428	MFS_2: MFS/sugar transport protein	98.75
COG0477	338	ProP Permeases of the major facilitator superfamil	98.7
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.7
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.68
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.68
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	98.66
PRK10429	473	melibiose:sodium symporter; Provisional	98.65
KOG0254	513	consensus Predicted transporter (major facilitator	98.63
PRK09669	444	putative symporter YagG; Provisional	98.63
KOG3762	618	consensus Predicted transporter [General function	98.56
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.56
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.51
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.49
PRK11462	460	putative transporter; Provisional	98.47
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.46
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.45
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.44
KOG2533	495	consensus Permease of the major facilitator superf	98.42
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.42
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.41
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.38
COG2211	467	MelB Na+/melibiose symporter and related transport	98.33
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.31
PF12832	77	MFS_1_like: MFS_1 like family	98.3
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.28
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.26
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.19
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.11
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.02
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.0
COG3202	509	ATP/ADP translocase [Energy production and convers	97.98
KOG3880	409	consensus Predicted small molecule transporter inv	97.92
PF12832	77	MFS_1_like: MFS_1 like family	97.89
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.87
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.86
KOG2563	480	consensus Permease of the major facilitator superf	97.83
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.81
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.56
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.45
COG0477	338	ProP Permeases of the major facilitator superfamil	97.23
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	97.2
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	97.0
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.99
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	96.94
KOG0637	498	consensus Sucrose transporter and related proteins	96.76
KOG3626	735	consensus Organic anion transporter [Secondary met	96.68
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.6
PRK03612	521	spermidine synthase; Provisional	96.3
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	96.26
PRK03612	521	spermidine synthase; Provisional	96.21
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	96.01
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	95.75
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	95.42
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	95.09
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	94.22
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	91.67
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.63
KOG4830	412	consensus Predicted sugar transporter [Carbohydrat	91.28
KOG3097	390	consensus Predicted membrane protein [Function unk	90.95
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	90.61
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	90.0
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	89.84
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	85.89
KOG3880	409	consensus Predicted small molecule transporter inv	84.1
KOG2881	294	consensus Predicted membrane protein [Function unk	80.85

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=277.39  Aligned_cols=373  Identities=16%  Similarity=0.165  Sum_probs=307.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +..+..+.++.|.......+..+.+|++.+|+        +++....|+..+.|.++..+++|+...+.||+.||++++.
T Consensus        12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl--------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~   83 (394)
T COG2814          12 WLALLALALAAFAIGTTEFVPVGLLPPIAADL--------GVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLG   83 (394)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH
Confidence            45567778888888899999999999999887        6677788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH-
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR-  165 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~-  165 (484)
                      ...++.++.+++++++|   ++.++++|++.|+.. |.+.+...++..|..|+++|++++++...+.+++.++|..+|. 
T Consensus        84 ~l~lFi~~n~l~alAp~---f~~Ll~aR~~~g~a~-G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~  159 (394)
T COG2814          84 LLALFIVSNLLSALAPS---FAVLLLARALAGLAH-GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTF  159 (394)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   999999999999765 8888999999999999999999999999999999888876665 


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          166 ---FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       166 ---~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                         .+|||.+|+..+.++++..+..+..+|  |++.+++                             ...+.++.++ .
T Consensus       160 ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~~~~-----------------------------~~~~~~~~~~-~  207 (394)
T COG2814         160 LGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEISGS-----------------------------LPGPLRTLLR-L  207 (394)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccCCCC-----------------------------CCcchhHHHH-H
Confidence               469999999999999999999999999  2211111                             1123344444 4


Q ss_pred             hccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      .++|.++...+..++...+++..++|+..++++..|++.+..++.+..++++..+++ .+.|++.|| +.++.+.....+
T Consensus       208 l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn-~~gGrl~dr-~~~~~l~~~~~l  285 (394)
T COG2814         208 LRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGN-LLGGRLADR-GPRRALIAALLL  285 (394)
T ss_pred             hcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHH-HHHhhhccc-cchhHHHHHHHH
Confidence            567889999999999999999999999999999999999999999999999999999 888999999 888888888777


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      .++.++.+.+..+....                                     ......+.++.........+....+.
T Consensus       286 ~a~~~l~l~~~~~~~~~-------------------------------------~~~~~~~wg~a~~~~~~~~~~~~a~~  328 (394)
T COG2814         286 LALALLALTFTGASPAL-------------------------------------ALALLFLWGFAFSPALQGLQTRLARL  328 (394)
T ss_pred             HHHHHHHHHHhcchHHH-------------------------------------HHHHHHHHHHHhhhhhhHHHHHhccc
Confidence            77777776665543320                                     13333345666555555566666663


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      . ||.++.+.+++....++|..+|..++|.++|+. ++..       ...+.++..+++..+.....++
T Consensus       329 ~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~-g~~~-------~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         329 A-PDAADLAGSLNVAAFNLGIALGAALGGLVLDAL-GYAA-------TGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             C-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-chHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence            3 588999999999999999999999999999995 6655       4466666666666665544443

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=8.9e-35  Score=285.58  Aligned_cols=366  Identities=14%  Similarity=0.134  Sum_probs=277.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (484)
                      ++.+.+..++.........+.+|.+.+|+        +.+..+.|+..+.+.+++.+++++.|.++||+|||+++..+.+
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   82 (390)
T PRK03545         11 VVTLALAAFIFNTTEFVPVGLLSDIAQSF--------HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFV   82 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHcchHHHHhHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence            44445555554444455667788887766        5666778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh---
Q 011514           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~---  166 (484)
                      +..++.++++++++   ++.+++.|+++|++. +...+...+++.|++|+|+|++++++.+...++|..+||.+++.   
T Consensus        83 ~~~~~~~~~~~~~~---~~~l~~~r~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~  158 (390)
T PRK03545         83 LFIASHVLSALAWN---FTVLLISRIGIAFAH-AIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQ  158 (390)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            99999999999999   899999999999755 66778899999999999999999999999999999999988865   


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhcc
Q 011514          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (484)
Q Consensus       167 -l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (484)
                       .+||+.|++.+++.++..+.....+||+++++++                                 +.++ .+...++
T Consensus       159 ~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~~~  204 (390)
T PRK03545        159 YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEHSG---------------------------------SLKS-LPLLFRR  204 (390)
T ss_pred             HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---------------------------------hHHH-HHHHHhC
Confidence             5899999999988777766666666664321100                                 1112 2235566


Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      |.++......++.........++.+.|+++..|+++.+.+...+..+++..+++ ++.+++.||+++|... .+..+...
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~-~~~~~~~~  282 (390)
T PRK03545        205 PALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGS-VLFSRLGNRHPSGFLL-IAIALLLV  282 (390)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-HHHHHHhhccchhHHH-HHHHHHHH
Confidence            777666665555555555566778888888889999999999999999999998 7779999999887654 44444434


Q ss_pred             HHHHH-hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          326 NMFIC-SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       326 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      +...+ ...++.+.                                      +.....+.|++.....+...+.+.+..|
T Consensus       283 ~~~~l~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~~  324 (390)
T PRK03545        283 CLLLLLPAANSEWH--------------------------------------LSVLSIFWGIAIMCIGLAMQVKVLKLAP  324 (390)
T ss_pred             HHHHHHHHhchHHH--------------------------------------HHHHHHHHHHHHhcchHHHHHHHHHhCC
Confidence            33332 33333333                                      1334446677766666777778888776


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                       +++++++|..+...++|..+||.+.|.+.|+. +.+.       .+.+.+.+.+++.+......+
T Consensus       325 -~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        325 -DATDVAMALFSGIFNIGIGAGALLGNQVSLHL-GLSS-------IGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhH-------HHHHHHHHHHHHHHHHHHHcc
Confidence             68899999999999999999999999999986 6554       456666666666666555444

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=5.2e-34  Score=281.96  Aligned_cols=351  Identities=15%  Similarity=0.130  Sum_probs=270.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (484)
                      +...+...+++.++.....+..|.+.+++        +.+..+.|++.+.+.++..++.++.|+++||+|||+++..+.+
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   88 (406)
T PRK11551         17 IGLCFLVALLEGLDLQSAGVAAPRMAQEF--------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVA   88 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHH
Confidence            34445667777888888888888888776        4556678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh---
Q 011514           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~---  166 (484)
                      +..++.+++.++++   ++.+++.|++.|++. +...+...+++.|++|+++|++++++.+....+|..+++.++..   
T Consensus        89 ~~~~~~~~~~~~~~---~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~  164 (406)
T PRK11551         89 LFGLFSLATAQAWD---FPSLLVARLLTGVGL-GGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAG  164 (406)
T ss_pred             HHHHHHHHHHHhcc---HHHHHHHHHHHHhhH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999998   888999999999755 66678899999999999999999999999999999999988755   


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhcc
Q 011514          167 -LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (484)
Q Consensus       167 -l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (484)
                       .+||..|++.+++.++..+...+++||++++.+++++               +         +++.+..+..++. .++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------~---------~~~~~~~~~~~~~-~~~  219 (406)
T PRK11551        165 DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---------------G---------KQRAPVLRALFGE-GRA  219 (406)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc---------------c---------hhhhhhHHHHhhh-hhh
Confidence             4799999998877666666666778887653322100               0         0000001111110 111


Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +..+......++..........+.|.|+++ .|+++.+.+...+..+++..++. ++.+++.||+++|+.+..+.....+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~  297 (406)
T PRK11551        220 TATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGS-LLIGALMDRLRPRRVVLLIYAGILA  297 (406)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            223333333444444555667788999887 49999999999999999999998 7779999999999988877666666


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      ++..+...++.+.                                      ......+.+++.....+...++..|.+|+
T Consensus       298 ~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  339 (406)
T PRK11551        298 SLAALAAAPSFAG--------------------------------------MLLAGFAAGLFVVGGQSVLYALAPLFYPT  339 (406)
T ss_pred             HHHHHHhcCcHHH--------------------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHcch
Confidence            6665555554433                                      13334456666666778888999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ++||++.|+.+....++..++|.+.|.+.++.
T Consensus       340 ~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~  371 (406)
T PRK11551        340 QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG  371 (406)
T ss_pred             hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC
Confidence            99999999999999999999999999999864

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=1.7e-33  Score=279.90  Aligned_cols=393  Identities=11%  Similarity=0.054  Sum_probs=272.5

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      ...++..+...+......+.+|.+.+++        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~   97 (434)
T PRK11663         26 ITMYLGYALFYFTRKSFNAAMPEMLADL--------GLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIA   97 (434)
T ss_pred             HHHHHHHHHHHHhhhhHHHhhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHH
Confidence            3445555666666667778888887765        55667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----
Q 011514           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----  166 (484)
Q Consensus        91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----  166 (484)
                      .+++.++++++++   ++.+++.|++.|++. +...+...+++.|++|+++|++++++.+...++|..++|.+++.    
T Consensus        98 ~~~~~~~~~~~~~---~~~l~~~~~l~g~~~-g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~  173 (434)
T PRK11663         98 TGIINILFGFSSS---LWAFALLWVLNAFFQ-GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALH  173 (434)
T ss_pred             HHHHHHHHHHHhH---HHHHHHHHHHHHHHH-HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999   888899999999755 55567889999999999999999999999999999999987765    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH-Hhhcc
Q 011514          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC-LLRSS  245 (484)
Q Consensus       167 l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  245 (484)
                      .+||+.|++.+++.++..+...+.+||+|++...+++.++.       .+ .++..+   +.+++..+.++.++ ...++
T Consensus       174 ~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~  242 (434)
T PRK11663        174 YGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR-------HD-ALELAQ---QQEGAGLSRKEILTKYVLLN  242 (434)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc-------cc-ccccch---hccccCCChhhhHHHHHhcC
Confidence            48999999988777666666666678876433211100000       00 000000   00001112333222 24566


Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchHHH-HHhHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SLGLFA  322 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~-~~~~~~  322 (484)
                      +.++...+..++.........+++|.|+++.+|++..+.+...+...++..++. ++.++++||+  ++|+.. ......
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~r~~~~~~~~~~  321 (434)
T PRK11663        243 PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGA-LVAGWGSDKLFNGNRGPMNLIFAAG  321 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH-HHHhhhHHHhccCCccHHHHHHHHH
Confidence            778877777777776777788899999988889999999999999999999998 7779999998  333322 111111


Q ss_pred             HHHHHHHHh-hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          323 ACINMFICS-ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       323 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      ..+....+. .......          .                           ........+++.............|
T Consensus       322 ~~~~~~~~~~~~~~~~~----------~---------------------------~~~~~~~~g~~~~~~~~~~~~~~~~  364 (434)
T PRK11663        322 ILLSVGSLWLMPFASYV----------M---------------------------QAACFFTIGFFVFGPQMLIGMAAAE  364 (434)
T ss_pred             HHHHHHHHHHcccccHH----------H---------------------------HHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            111111111 1111111          0                           0111122333222222233456678


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      ..|+++||++.|+.+...++|..++|.+.|.+.|+. +++.       .|.+.+++.+++.+..++..+++
T Consensus       365 ~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~~~~~~~  427 (434)
T PRK11663        365 CSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW-HWTG-------FFVVISIAAGISALLLLPFLNAQ  427 (434)
T ss_pred             cccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc-ccHH-------HHHHHHHHHHHHHHHHHHHHhhh
Confidence            899999999999999999999999999999999986 5554       45666666555555444443333

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=8.1e-34  Score=280.01  Aligned_cols=382  Identities=12%  Similarity=0.061  Sum_probs=271.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.+..+++..+++.++........|.+.+|+        +.+..+.|++.+++.+++.+++++.|+++||+|||+++..
T Consensus         7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~   78 (412)
T TIGR02332         7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDL--------GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAG   78 (412)
T ss_pred             hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc--------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHH
Confidence            45566667777777888888888888666555        5666788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.++++++++   ++.+++.|+++|++. +...|....++.|++|+++|++++++++...++|..+++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~  154 (412)
T TIGR02332        79 IMVLWGIASTATMFATG---PESLYLLRILVGIAE-AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY  154 (412)
T ss_pred             HHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   889999999999865 66678888999999999999999999999999999999988764


Q ss_pred             ----------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCC-CCCCCcccccccccCCCCCCCCccCcccCCCCch
Q 011514          167 ----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDD-DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (484)
Q Consensus       167 ----------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (484)
                                .+||+.|++.++..++..++.++++||+|++.+.. +++++......+ .++.+.+.++ ...+++....
T Consensus       155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~  232 (412)
T TIGR02332       155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMID-NDQLTLEQPE-GAFAHAAMPQ  232 (412)
T ss_pred             HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHH-hccccccccc-cccccccccH
Confidence                      38999999988888777777777789987543210 000000000000 0000000000 0000111111


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhh-cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Q 011514          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (484)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  314 (484)
                      ++.++.++ ++.++...+..++.........+++|.|+++. .|++..+.+.+.....++..++. ++.++++||+++|+
T Consensus       233 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~-l~~g~l~dr~~~r~  310 (412)
T TIGR02332       233 RSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGM-IWWSRHSDRLKERK  310 (412)
T ss_pred             HHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHH-HHHHHHhcccCccH
Confidence            22233344 46677777777777777888899999999873 46788888888899999999998 77799999998766


Q ss_pred             H-HHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          315 L-LSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       315 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      . .........+++.+.....+...                                      ......+.+.+.....+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~~~~~  352 (412)
T TIGR02332       311 HHTALPYLFAAAGWLLASATDHNLI--------------------------------------QLLGIIMASMGSFSAMA  352 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHH--------------------------------------HHHHHHHHHHHhhhhhh
Confidence            4 33333333333322222211111                                      01111122222222333


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      .......+..|+++|+++.|+.+...++|++++|.+.|.+.|..+++..
T Consensus       353 ~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~  401 (412)
T TIGR02332       353 IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNS  401 (412)
T ss_pred             HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCch
Confidence            3445556778999999999999999999999999999999998644554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=1.6e-33  Score=274.15  Aligned_cols=351  Identities=15%  Similarity=0.155  Sum_probs=281.3

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHH
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (484)
                      .++...++..++.++..+.+|.+..+.        +.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus         3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~   74 (365)
T TIGR00900         3 LLFAAQLISLIGTAITQVALPLYVLAG--------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIR   74 (365)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHHh--------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHH
Confidence            456788899999999999999998876        455667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc-----chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           92 IIPLAILAYRR-----SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        92 ~i~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      .++..+..+.+     +   ++.+++.|++.|++. +...+...+++.|+.|+++|++++++.+....+|.++||.+++.
T Consensus        75 ~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  150 (365)
T TIGR00900        75 AVLVAVLPFVALLGGLN---IWQVYVLAGILAIAQ-AFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL  150 (365)
T ss_pred             HHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            88888888776     7   888999999999755 77778999999999999999999999999999999999988876


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                          .+||+.|++.++..++..+..+. ++++++++++++                 +      ..++..++.++..+..
T Consensus       151 l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~~  206 (365)
T TIGR00900       151 MYATLGIKWAIWVDAVGFAISALLIVS-VRIPELAASEIQ-----------------A------LSNAVLRDTREGIKFV  206 (365)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHh-cccccCCCcccc-----------------c------cchhHHHHHHhHHHHH
Confidence                48999999887666555444433 322111110100                 0      0000011233445557


Q ss_pred             hccchhHHHHHHHHHHhchhhhhH-HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQ-ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      +++|.++......++......... .+.|.|.++.+|.++.+.+......+++..++. ++.+++.||.++++.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~  285 (365)
T TIGR00900       207 LKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGA-LLLGLLGRYFKRMALMTGAIF  285 (365)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchhHHHHHHHH
Confidence            788888888777777776666655 788999988789999999999999999998888 666899999999998888777


Q ss_pred             HHHHHHHHHhhccc-hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          322 AACINMFICSISWS-AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       322 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      +.+++.....+.++ .+.                                      .....++.+++.+...+...++..
T Consensus       286 ~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~  327 (365)
T TIGR00900       286 VIGLAILVVGLTPPNFPL--------------------------------------FLVLWFAIGVGYGPINVPQGTLLQ  327 (365)
T ss_pred             HHHHHHHHHHhhchhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666665543 332                                      144555778888888899999999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      |.+|+++||++.|+.+...+++..++|.+.|.+.|..
T Consensus       328 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~  364 (365)
T TIGR00900       328 RRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHL  364 (365)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999864

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=1.3e-32  Score=269.36  Aligned_cols=369  Identities=15%  Similarity=0.112  Sum_probs=273.7

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchh
Q 011514            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (484)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~   82 (484)
                      |++++|+++.++.+.++..++.+...|.+|.+.+++        +.+..+.|++.+.+.++..+++++.|+++||+|||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~   72 (381)
T PRK03633          1 MSTYTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE--------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNR   72 (381)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            567788999999999999999999999999999876        445567899999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        83 ~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .+..+.++.+++..+++++++   ++.+++.|+++|++. +...|...+.+.|..++++|+++++..+...++|..+||.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~  148 (381)
T PRK03633         73 SYYLASLIFAAGCAGLGLMVG---FWSWLAWRFVAGIGC-AMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQL  148 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   889999999999765 6666777888889999999999999999999999999999


Q ss_pred             hhHhhhh---HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       163 l~~~l~~---~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +++.+..   +...+..+...... +...+ .+.++++++++                             +..+.++  
T Consensus       149 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~-----------------------------~~~~~~~--  195 (381)
T PRK03633        149 LVSKVSTELMSVLPWVTGLVLAAI-LPLLF-TRILNQQAENH-----------------------------DSTSIWP--  195 (381)
T ss_pred             HHhcccccccchHHHHHHHHHHHH-HHHHH-hcccCCCCCCC-----------------------------CCCCHHH--
Confidence            9887532   22222222222211 11111 22211110000                             0012222  


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                        ..++|..+......+...........++|.|.++. |.++.+.+.+.+...+...+++ +..+++.||+++|+.+..+
T Consensus       196 --~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~~~~~~l~~~  271 (381)
T PRK03633        196 --MLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQ-GMSDASIGFWMALLVSAGILGQ-WPIGRLADRFGRLLVLRVQ  271 (381)
T ss_pred             --HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHcCcHHHHHHH
Confidence              33455555444334444445556677889999875 9999999999898888888988 6679999999999988888


Q ss_pred             HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514          320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV  399 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  399 (484)
                      .....++.....  .....                                       .....+.+.+.....|...+.+
T Consensus       272 ~~~~~~~~~~~~--~~~~~---------------------------------------~~~~~l~g~~~~~~~p~~~~~~  310 (381)
T PRK03633        272 VFVVILGSIAML--SQAAM---------------------------------------APALFILGAAGFTLYPVAMAWA  310 (381)
T ss_pred             HHHHHHHHHHHh--hhHHH---------------------------------------HHHHHHHHHHHHhHHHHHHHHH
Confidence            777766655442  11111                                       2223345555556778888989


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          400 SKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       400 ~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      .|..|+++++...+..+...++|..+||.+.|.+.|+. +...       .|.+.+.+.++..+..++.+
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~-g~~~-------~f~~~~~~~l~~~~~~~~~~  372 (381)
T PRK03633        311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY-SDNL-------LFIMIASVSFIYLLMLLRKA  372 (381)
T ss_pred             HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CccH-------HHHHHHHHHHHHHHHHHhcc
Confidence            99999888888888888899999999999999999986 5544       45666666655555444443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=100.00  E-value=1.1e-32  Score=270.85  Aligned_cols=371  Identities=14%  Similarity=0.101  Sum_probs=277.6

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      ..++...++...+.....|.++.+.++..       +.+..+.|++.+...++..+.+++.|+++||+|||+++..+.++
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~   85 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQL-------GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLM   85 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHH
Confidence            66778889999999999999998875543       56677889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh---
Q 011514           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL---  167 (484)
Q Consensus        91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l---  167 (484)
                      .+++.+.+.+.++   ++.+++.|+++|++. +...|...+++.|+.|+|+|++++++.+...++|..+||.+++.+   
T Consensus        86 ~~~~~~~~~~~~~---~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~  161 (400)
T PRK11646         86 RAAGFATMAIAHE---PWLLWLSCILSGLGG-TLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQY  161 (400)
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999988   888899999999754 667788899999999999999999999999999999999988864   


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccch
Q 011514          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (484)
                      +||+.|++.+...++..+...+..||.++.+.+                                ++.++.++...++|.
T Consensus       162 g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~  209 (400)
T PRK11646        162 DFRLVCATGAVLFVLAAAFNAWLLPAYKLSTVR--------------------------------TPVREGMTRVLRDKR  209 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCcccccccc--------------------------------hhhHHHHHHHHcCch
Confidence            899999988877666655555556653211000                                011222333556676


Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      ++...+..+...........+.|.|.++..+ ++.+.+.+.+..++..........++..||.+.++.+..+..+.+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  288 (400)
T PRK11646        210 FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSM  288 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence            6655544444433333445678999888744 777888888887777776664554444455666666667777777776


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      ..+...++.+.                                      +.....+.+.+.+...|...+...+.+|+++
T Consensus       289 ~~l~~~~~~~~--------------------------------------~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~  330 (400)
T PRK11646        289 FPIGMVSNLQQ--------------------------------------LFTLICLFYIGSIIAEPARETLSASLADARA  330 (400)
T ss_pred             HHHHHhhhHHH--------------------------------------HHHHHHHHHHHHHHHHccHHHHHHhcCCccc
Confidence            66665554433                                      1333345667777778888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ||+++|+.+....+|..+||.++|.+.|+.+++..    ....+...+++.+++......
T Consensus       331 ~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  386 (400)
T PRK11646        331 RGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQ----PELPWMMLGIIGLITLLALYW  386 (400)
T ss_pred             chhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCC----cchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998633221    122445555555554444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=6.8e-33  Score=274.71  Aligned_cols=354  Identities=14%  Similarity=0.108  Sum_probs=274.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|.+..++...++..++.++..+.+|.+.++.        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         16 HPAFRAVFIARFISIFGLGLLGVAVPVQIQMM--------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILL   87 (417)
T ss_pred             CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEe
Confidence            45666777788899999999999999998876        3345678999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh-----ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH
Q 011514           87 PLTLSIIPLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        87 ~~~~~~i~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      +..+.+++.+..+.     .++   ++.+++.|++.|++. +...+...+++.|+.|+++|+++.++.+...++|..+||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~  163 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPS---LLAIYLLGLWDGFFG-SLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISP  163 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHH-HHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHH
Confidence            88887777665542     345   678889999999754 666678899999999999999999999999999999999


Q ss_pred             HhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH
Q 011514          162 LAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (484)
Q Consensus       162 ~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (484)
                      .+++.    .+|++.|++.++..++..+. ...+||++++++++                           ++..++.++
T Consensus       164 ~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~---------------------------~~~~~~~~~  215 (417)
T PRK10489        164 ALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPALPPPPQPR---------------------------EHPLRSLLA  215 (417)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc---------------------------ccchHHHHH
Confidence            98876    37899998887666555443 44567654322111                           001112334


Q ss_pred             HHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH
Q 011514          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  317 (484)
                      .++..+++|.++...+..++... ......+.|.|.++.+|.++.+.+.+.+..+++..++. ++.+++.||.++++.+.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~~~l~~~~~~~~~l~  293 (417)
T PRK10489        216 GFRFLLASPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGA-LTSGWLAHSARPGLLML  293 (417)
T ss_pred             HHHHHHcChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHH-HHHHHhhhccCcchHHH
Confidence            45556677776665555444332 34567788999999889999999999999999888888 67799999977777777


Q ss_pred             HhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          318 LGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      .+..+..++.+.+.+.++.+.                                      ......+.+++.+...+...+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~  335 (417)
T PRK10489        294 LSTLGSFLAVGLFGLMPMWIL--------------------------------------AVLCLALFGYLSAISSLLQYT  335 (417)
T ss_pred             HHHHHHHHHHHHHHccchHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            777777777666655544333                                      134444667777777777788


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      ++++..|++.||+++|+.+...++|..+||.+.|.+.+.. +..
T Consensus       336 ~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~-g~~  378 (417)
T PRK10489        336 LLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM-TPV  378 (417)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-chh
Confidence            9999999999999999999999999999999999999986 443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.2e-33  Score=261.10  Aligned_cols=370  Identities=14%  Similarity=0.097  Sum_probs=287.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHh----hHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchh
Q 011514            7 IKTLSHLFVTVFLWGFATMM----VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA   82 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~   82 (484)
                      +|..+-++.+.++...++..    ..-..|.+.+|.        +.+..+.|++.+.+.+.+.++..+.|.++||.+.|+
T Consensus        24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~--------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~   95 (448)
T COG2271          24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG--------GLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRY   95 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCce
Confidence            44445556666666665544    445566666553        466678899999999999999999999999999999


Q ss_pred             HhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           83 MLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        83 ~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .+..++++.++..++++++++   ++.+.+..+++|.+. |.-.|.+...++.|++++|||+..++++.+.++|..+.|.
T Consensus        96 fm~~gLilsai~nil~Gfs~s---~~~~~~l~~lng~fQ-g~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~  171 (448)
T COG2271          96 FMAFGLILSAIVNILFGFSPS---LFLFAVLWVLNGWFQ-GMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL  171 (448)
T ss_pred             eehHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHh-cCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence            999999999999999999999   899999999999877 6666889999999999999999999999999999888887


Q ss_pred             hh--Hh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          163 AA--RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       163 l~--~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      +.  +.    .+||..|++.++++++..++.++..+|+|+...-++-+       +.+.+..+..   +++.+++..+.+
T Consensus       172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie-------~~~~d~~e~~---~~~~~~~~ls~~  241 (448)
T COG2271         172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPPIE-------EYRGDPLEIY---EEEKENEGLTAW  241 (448)
T ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHH-------HhhcCchhhh---hhhccCCCccHH
Confidence            77  54    27999999999999999999999999998765432100       0000000000   111111112333


Q ss_pred             -HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cch
Q 011514          237 -DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEA  313 (484)
Q Consensus       237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~  313 (484)
                       ...+.+.+||.+|.+.+..++.....++...+.|.|+.|..|+|..++++..+.+-.+++.+. ++.|+++||+  |||
T Consensus       242 ~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~-Ll~GwlSDklfkgrR  320 (448)
T COG2271         242 QIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGT-LLAGWLSDKLFKGRR  320 (448)
T ss_pred             HHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHH-HHHHHHHHHhccccc
Confidence             345668899999999999999999999999999999999999999999999999999999999 7789999985  555


Q ss_pred             HHH-HHhHHHHHHHHHHHhhccch--hhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhh
Q 011514          314 KLL-SLGLFAACINMFICSISWSA--WVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVF  390 (484)
Q Consensus       314 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  390 (484)
                      ... ++.++...++...+...++.  +.                                      ..+....+|+....
T Consensus       321 ~p~~~i~~~~i~~~~~~~w~~~~~~~~l--------------------------------------~~~~l~~iGf~IyG  362 (448)
T COG2271         321 GPMALIFMLLITASLVLYWLAPNGSYLL--------------------------------------DAILLFIIGFLIYG  362 (448)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCCccHHH--------------------------------------HHHHHHHHHHHHhh
Confidence            554 34444455555555555543  22                                      13344456666555


Q ss_pred             hhhHHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 011514          391 ATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALF  437 (484)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~  437 (484)
                      ..-..-....|.+|++..|++.|+...+.++ |...+....|.+.|.+
T Consensus       363 PqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~  410 (448)
T COG2271         363 PQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTW  410 (448)
T ss_pred             HHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecC
Confidence            5556666778999999999999999999999 8888888888888763

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1e-32  Score=270.75  Aligned_cols=353  Identities=11%  Similarity=0.035  Sum_probs=261.0

Q ss_pred             HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch
Q 011514           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (484)
Q Consensus        25 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~  104 (484)
                      ....|.+|.+.+|+        +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.+.++++++ 
T Consensus        26 ~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~-   96 (393)
T PRK09705         26 TSVGPLLPQLRQAS--------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQ-   96 (393)
T ss_pred             hccchhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcc-
Confidence            55678899888776        566677899999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-----hhhHHHHHHHHHH
Q 011514          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIV  179 (484)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-----l~~~~~f~~~~~~  179 (484)
                        ++.+++.|+++|++. +...+...+++.|++| ++|+++++.+..+...|..+|+.+++.     .+||..+...++.
T Consensus        97 --~~~ll~~r~l~Gig~-~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~  172 (393)
T PRK09705         97 --SALLLSSALLGGVGI-GIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP  172 (393)
T ss_pred             --hHHHHHHHHHHHhHH-HHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence              888999999999865 6666788899999987 789999999998888888888777655     2799887766544


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHh
Q 011514          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (484)
Q Consensus       180 ~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (484)
                      .++.. ..++...+.+++++++                  +      +  +   +.++    ..++++.+...+..++..
T Consensus       173 ~~~~~-~~~~~~~~~~~~~~~~------------------~------~--~---~~~~----~l~~~~~~~l~~~~~~~~  218 (393)
T PRK09705        173 AVVAL-FAWWWQSAREVASSHK------------------T------T--T---TPVR----VVFTPRAWTLGVYFGLIN  218 (393)
T ss_pred             HHHHH-HHHHHHhcCCCccccC------------------C------C--c---CCcc----cccCHhHHHHHHHHHHHH
Confidence            43332 2222222211110000                  0      0  0   0011    223455565666666666


Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhH
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI  339 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (484)
                      ..+....++.|.|+++ +|++..+.+...+..+++..+++ ++.+++.||.++|+....+..+..++...+...+.... 
T Consensus       219 ~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~-~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  295 (393)
T PRK09705        219 GGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGA-LLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP-  295 (393)
T ss_pred             HHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH-
Confidence            6777788899999987 69999999999999999999998 77799999999999888887777776665543332211 


Q ss_pred             HHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC-CCchhHHHHHHHHH
Q 011514          340 KIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGCISGI  418 (484)
Q Consensus       340 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~  418 (484)
                                                            .....+.+++.+...|.......+..+ ++++|+.+|+.+..
T Consensus       296 --------------------------------------~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  337 (393)
T PRK09705        296 --------------------------------------VLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGI  337 (393)
T ss_pred             --------------------------------------HHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence                                                  111224566666667776666666664 57899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          419 SSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       419 ~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+++..++|.+.|++.|..++++.       .|.+.+++.+.........++++
T Consensus       338 ~~~~~~~gp~~~G~l~~~~g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  384 (393)
T PRK09705        338 GFIIAGLAPWFSGVLRSISGNYLM-------DWAFHALCVVGLMIITLRFAPAR  384 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchH-------HHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999999744443       44555555555555545454444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=1.7e-33  Score=282.69  Aligned_cols=361  Identities=12%  Similarity=0.052  Sum_probs=256.8

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHH
Q 011514           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (484)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i   93 (484)
                      ++..++..+......+..|.+.+|+        +.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.++
T Consensus        35 ~~~~~~~y~~r~~~~~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~  106 (467)
T PRK09556         35 FIGYLTMYLIRKNFKAAQNDMISTY--------GLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI  106 (467)
T ss_pred             HHHHHHHHHHhcChhhhhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence            3344444555566777888887766        55566789999999999999999999999999999999888888777


Q ss_pred             HHHHHHh-----ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-
Q 011514           94 PLAILAY-----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (484)
Q Consensus        94 ~~~~~~~-----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-  167 (484)
                      .....+.     +++   ++.+++.|+++|++. +...|...++++|++|+++|++++++.+...++|..+++.+...+ 
T Consensus       107 ~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~  182 (467)
T PRK09556        107 CMLGFGASLGSGSVS---LGLMIALWALSGFFQ-STGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGA  182 (467)
T ss_pred             HHHHHHHHHhcccch---HHHHHHHHHHHHHHH-hccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHH
Confidence            7766655     577   889999999999755 556688999999999999999999999999999999998776431 


Q ss_pred             ------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH-HH
Q 011514          168 ------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-IC  240 (484)
Q Consensus       168 ------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  240 (484)
                            +||..|.+.+++.++..+..++..+|+|++.+..++++..    .+..+ .+++     ..+++..+.++. .+
T Consensus       183 ~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~----~~~~~-~~~~-----~~~~~~~~~~~~~~~  252 (467)
T PRK09556        183 NYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIF----GEPIS-EEDK-----ETESTDMTKWQIFVE  252 (467)
T ss_pred             HhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcc----cCccc-hhhh-----ccccccCcHHHHHHH
Confidence                  4888888888777776666666667765432211110000    00000 0000     000011112222 23


Q ss_pred             HhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhH
Q 011514          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (484)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  320 (484)
                      ...++|.++...+..++......+...+.|.|+++.+|++..+.+...+...++..++. ++.|+++||+++|+......
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~g~r~~~~~~~  331 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS-LLWGWLSDLANGRRALVACI  331 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCchHHHHH
Confidence            35678889988888888877777888899999999899999999999888888888888 77799999999988765544


Q ss_pred             HHHHHHHHHHh--hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHH
Q 011514          321 FAACINMFICS--ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSI  398 (484)
Q Consensus       321 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  398 (484)
                      ....++.....  ...+.+.                                      .....++.|.+...........
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~G~~~~~~~~~~~~~  373 (467)
T PRK09556        332 ALALIIFTLGVYQHATSEYM--------------------------------------YLASLFALGFLVFGPQLLIGVA  373 (467)
T ss_pred             HHHHHHHHHHHHHhcCcHHH--------------------------------------HHHHHHHHHHHHhhHHHHHHHH
Confidence            43333322221  1122212                                      1122223443322222233456


Q ss_pred             HhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 011514          399 VSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTA  435 (484)
Q Consensus       399 ~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~  435 (484)
                      ..|..|++.+|++.|+.+...++ |..++|.+.|.+.|
T Consensus       374 ~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~  411 (467)
T PRK09556        374 AVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD  411 (467)
T ss_pred             HHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence            67999999999999999999997 77999999999999

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=2.5e-32  Score=275.53  Aligned_cols=370  Identities=15%  Similarity=0.096  Sum_probs=252.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHH-HHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGF-QQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~-~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      ++......++.+++.++..++....|.+.+++. ++.++ .. .....+ ..++..++..++++++|+++||+|||+++.
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~-~~~~~-~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~   91 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFF-PGADP-SV-QMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILA   91 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCc-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence            445566678899999999998888887776653 22222 11 111122 358888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhH-----HHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH
Q 011514           86 LPLTLSIIPLAILAYRRSISFF-----YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~-----~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  160 (484)
                      .+.++.+++.+++++++++...     ..+++.|+++|++. |...+...++++|++|+++|+++.++...+..+|..+|
T Consensus        92 ~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~-g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg  170 (490)
T PRK10642         92 ITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSV-GGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLG  170 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHh-HhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999994211     24889999999866 66678899999999999999999999998888888877


Q ss_pred             HHhhH------------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcc
Q 011514          161 TLAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPV  228 (484)
Q Consensus       161 ~~l~~------------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (484)
                      +.+..            ..|||++|++.+++.++ .++....+||+|+..+.+++.+           +.+++ ..   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~-----------~~~~~-~~---~  234 (490)
T PRK10642        171 AGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLE-----------QGDRE-GL---Q  234 (490)
T ss_pred             HHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhh-----------hhccc-cc---c
Confidence            75432            25899999997755544 4444566888876432110000           00000 00   0


Q ss_pred             cCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011514          229 CKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP  308 (484)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (484)
                      +++..++++.++.  ..+.+.......++....++....+.|.|+++.+|++..+.+.......++..++. ++.++++|
T Consensus       235 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d  311 (490)
T PRK10642        235 DGPKVSFKEIATK--HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQ-PVMGLLSD  311 (490)
T ss_pred             ccccCCHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            0111234443221  11222222233344455666778899999988889988877777677777777777 67799999


Q ss_pred             hhcchHHHHHhHHHHHHHHHH-Hhh--ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHH
Q 011514          309 ILGEAKLLSLGLFAACINMFI-CSI--SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFS  385 (484)
Q Consensus       309 ~~g~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  385 (484)
                      |+|||+.+..+.....+.... +..  ..+...                                      +.....+.+
T Consensus       312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g  353 (490)
T PRK10642        312 RFGRRPFVILGSVALFVLAIPAFILINSNVIGL--------------------------------------IFAGLLMLA  353 (490)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHH--------------------------------------HHHHHHHHH
Confidence            999999887776543322221 211  111122                                      122223444


Q ss_pred             HhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          386 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ++.+........+..+.+|++.||++.|..+....+++.++|.+.+.+.+..
T Consensus       354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~  405 (490)
T PRK10642        354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST  405 (490)
T ss_pred             HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5444555556677788999999999999877777788889999999998764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=2.1e-32  Score=270.67  Aligned_cols=379  Identities=16%  Similarity=0.186  Sum_probs=285.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      +|+|....++++.++...+.+...|.+|.+.++.   |.++.+....+.|++.+++.++..++++++|+++||+|||+.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~   87 (408)
T PRK09874         11 NWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQL---GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIML   87 (408)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh---CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHH
Confidence            3677788888999999999999999999999886   5544343344679999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      ..+.+..+++.+++.+.++   ++.+++.|++.|+++ +. .+...+++.|..|+++|++++++......+|..++|.++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  162 (408)
T PRK09874         88 LRSALGMGIVMVLMGLAQN---IWQFLILRALLGLLG-GF-VPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAG  162 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhh-hh-HHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888   888999999999754 44 477888999999999999999999999999999999888


Q ss_pred             Hh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH
Q 011514          165 RF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (484)
Q Consensus       165 ~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (484)
                      +.    .+||+.|++.+++.++..+...+.+||++++.+++                             +..+.++..+
T Consensus       163 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~  213 (408)
T PRK09874        163 GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKK-----------------------------EMLHMREVVT  213 (408)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccch-----------------------------hhhHHHHHHH
Confidence            75    48999999998887777777767677754321111                             0011223233


Q ss_pred             HhhccchhHH-HHHHHHHHhchhhhhHHHHHHHHhhhcCcChh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          241 LLRSSVTLSQ-AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       241 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      .+ ++++.+. .....+...........+.+.|..+..+....   ..+.+....+++..++. ...+++.||+++|+.+
T Consensus       214 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~-~~~g~l~dr~g~~~~~  291 (408)
T PRK09874        214 SL-KNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSA-PRLGKLGDRIGPEKIL  291 (408)
T ss_pred             hC-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchhH
Confidence            23 3444433 33333444444455667788888776332221   23455556667777777 6669999999999998


Q ss_pred             HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          317 SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      ..+..+..++.+.....++.+.                                      +.....+.+++.+...+...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~  333 (408)
T PRK09874        292 ITALIFSVLLLIPMSFVQTPLQ--------------------------------------LGILRFLLGAADGALLPAVQ  333 (408)
T ss_pred             HHHHHHHHHHHHHHHHhccHHH--------------------------------------HHHHHHHHHhhhHhhHHHHH
Confidence            8888777766666555554444                                      13344567888888888888


Q ss_pred             HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          397 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      +...+..|++++|+.++..+....+|..+||.+.|.+.+.. +++.       .|.+.+++.+++.+..++.
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~-g~~~-------~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        334 TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANY-GFRA-------VFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhc-chhH-------HHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999875 5544       4566666666655555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=1.3e-32  Score=277.73  Aligned_cols=380  Identities=16%  Similarity=0.083  Sum_probs=293.4

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhH
Q 011514            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (484)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~   83 (484)
                      .+++..+..++++.++..++..++...+|.+.+|+        +.+..+.+|+.+.+.++...+.+++|+++||+|||++
T Consensus         2 ~~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l--------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~   73 (495)
T PRK14995          2 FRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL--------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL   73 (495)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence            34455677888899999999999999999998877        4444566899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcC-CccchhHHHHHHHHHHHhHHhHHHH
Q 011514           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        84 l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      +..+.++..++.+++++++|   ++.++++|+++|++. +...|.....+.+.+ |+++|++++++......+|..+||.
T Consensus        74 l~~~~~~~~~~~~~~~~a~~---~~~li~~r~l~G~g~-~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~  149 (495)
T PRK14995         74 LMLGGTLFGLASLAAAFSPT---ASWLIATRALLAIGA-AMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPL  149 (495)
T ss_pred             HHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999   899999999999865 666677777776765 6899999999999999999999999


Q ss_pred             hhHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccc---------cccccCCCCCCCCc-----
Q 011514          163 AARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITE---------ETEGVNQNESNSPV-----  224 (484)
Q Consensus       163 l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-----  224 (484)
                      +++.+    +||+.|++...+.++..++..+.+||++++++++.|..+....         ...+..+.......     
T Consensus       150 lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  229 (495)
T PRK14995        150 VGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTL  229 (495)
T ss_pred             HHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHH
Confidence            99874    8999999998888887777777788865433222111111000         00000000000000     


Q ss_pred             ----------cCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHH
Q 011514          225 ----------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA  294 (484)
Q Consensus       225 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  294 (484)
                                ...+.+..++..+ .+ ++++|.+....+..++......+...+.|.|+++.+|+++.+.|..+....++
T Consensus       230 ~~~~~~l~~f~~~e~~~~~p~~~-~~-lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~  307 (495)
T PRK14995        230 LTGALLLGLFIRTQLAASRPMID-MR-LFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVA  307 (495)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcC-HH-HhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence                      0000111112222 12 45678887777777777777777788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc---chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 011514          295 GTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW---SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILK  371 (484)
Q Consensus       295 ~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  371 (484)
                      ..++. .+.|++.||+|+|+.+..+..+..++...+....   +.+.                                 
T Consensus       308 ~~~~~-~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~---------------------------------  353 (495)
T PRK14995        308 SGFSG-PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQ---------------------------------  353 (495)
T ss_pred             HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHH---------------------------------
Confidence            99988 7779999999999988888887777766554332   1222                                 


Q ss_pred             hhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          372 SIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       372 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                           ......+.|++.+...+.......+.+|++++|.+.++.++..++|+.+|+.+.|.+++.
T Consensus       354 -----~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        354 -----AWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             -----HHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 133455778888888888888889999999999999999999999999999999999875

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=4.6e-33  Score=273.88  Aligned_cols=378  Identities=16%  Similarity=0.133  Sum_probs=271.5

Q ss_pred             HHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHH
Q 011514           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAIL   98 (484)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~   98 (484)
                      +..++.....+..|.+.+++        +.+..+.|++.+++.++..++.++.|+++||+|||+++..+.++.+++..++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~   76 (399)
T TIGR00893         5 INYLDRANLSFAAPMLQEDL--------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQ   76 (399)
T ss_pred             HHHHHHHhhhHhHHHHHHhh--------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHH
Confidence            34455566666677766555        4455677999999999999999999999999999999999999999999999


Q ss_pred             HhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHH
Q 011514           99 AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQ  174 (484)
Q Consensus        99 ~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~  174 (484)
                      +++++   ++.+++.|++.|++. +...+...+++.|++|+|+|++++++.+...++|..+||.+++.    .+||+.|+
T Consensus        77 ~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~  152 (399)
T TIGR00893        77 AFAGA---YVSLYILRVLLGAAE-APFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFI  152 (399)
T ss_pred             HHHcC---HHHHHHHHHHHHHHH-HhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHH
Confidence            99998   899999999999765 77778999999999999999999999999999999999988875    48999999


Q ss_pred             HHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHH
Q 011514          175 AATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVV  254 (484)
Q Consensus       175 ~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (484)
                      +.+++.++..+...+..||++++++..+++++....+.   .. ++. +.+++.+++..+    .+...++|+++...+.
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  223 (399)
T TIGR00893       153 IEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGG---LL-AEQ-QGKGPSTPKKYQ----IKELLKDRRVWGLALG  223 (399)
T ss_pred             HHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchh---hc-ccc-ccccccCCCccc----hHHHhcCHHHHHHHHH
Confidence            98888777777666667776543322111100000000   00 000 000011111112    2235667888888888


Q ss_pred             HHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH--HHHHhHHHHH----HHHH
Q 011514          255 AFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK--LLSLGLFAAC----INMF  328 (484)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~----~~~~  328 (484)
                      .++..........+.|.|+++.+|.++.+.+...+...+...++. ++.+++.||+++|+  ..........    ....
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (399)
T TIGR00893       224 QFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGM-ILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLL  302 (399)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHH
Confidence            888888888889999999999889999999999999999998888 77799999999886  1111111111    1111


Q ss_pred             HHhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          329 ICSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       329 ~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .....  +..+.                                       .......+.+.....+...++.+|..|++
T Consensus       303 ~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (399)
T TIGR00893       303 MFATNYVNIPYA---------------------------------------ALALVALGFFGLGAGAIGWALISDNAPGN  343 (399)
T ss_pred             HHHhccchhHHH---------------------------------------HHHHHHHHHhchhhhhHHHHHHHhhcChh
Confidence            11111  11111                                       22222233333336788899999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      +||++.|+.+...++++.++|.+.|.+.|..+++..       .+.+.+++.+++.+.
T Consensus       344 ~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~-------~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       344 IAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAG-------ALMVVAALALIGALS  394 (399)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhH-------HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999997622443       345555555544443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=2.8e-32  Score=268.89  Aligned_cols=372  Identities=11%  Similarity=0.118  Sum_probs=270.1

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      |++|++..+++..++..++.++..|.+|.+.++.+       +.+..+.|++.+++.++..+++++.|+++||+|||+++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~-------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l   84 (399)
T PRK05122         12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL-------GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV   84 (399)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence            45778888999999999999999999999875543       45566789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc---cch--hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhH
Q 011514           85 TLPLTLSIIPLAILAYR---RSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~---~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  159 (484)
                      ..+.++.+++.+.+.++   ++.  ..++.+++.|+++|++. +...+...+++.|+.|+|+|++++++.+.....|..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  163 (399)
T PRK05122         85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGE-SLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAI  163 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhH-HhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHH
Confidence            99999888877665543   221  12567899999999755 6667788899999999999999999999999999999


Q ss_pred             HHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCch
Q 011514          160 GTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (484)
Q Consensus       160 g~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (484)
                      ||.+++.    .+|+..+++..++..+..+.. ...|++++   ++                            +++.+.
T Consensus       164 g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~----------------------------~~~~~~  211 (399)
T PRK05122        164 GAPLGVLLYHWGGLAGLGLLIMLLALLGLLLA-RPRPAVPP---VK----------------------------GERLPF  211 (399)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH-hcCCCCCC---CC----------------------------ccchhH
Confidence            9888775    478988877665543332221 11121110   00                            000112


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      ++.++.      .+.......+..+.......+.+.|.++. |++  +.+...+..+++..++. +..+++.||+++|+.
T Consensus       212 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~  281 (399)
T PRK05122        212 RRVLGR------VWPYGMGLALASIGFGTIATFITLYYAAR-GWD--GAALALTLFGVAFVGAR-LLFGNLINRLGGLRV  281 (399)
T ss_pred             HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-ccc--cchHHHHHHHHHHHHHH-HHHHHHHHHhccHHH
Confidence            222211      11112222333344455667778887764 653  34566677777778887 667999999999998


Q ss_pred             HHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHH
Q 011514          316 LSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSF  395 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  395 (484)
                      +..+..+..++...+...++.+.                                      ......+.|++.+...+..
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~G~~~~~~~~~~  323 (399)
T PRK05122        282 AIVSLLVEILGLLLLWLAPSPWM--------------------------------------ALIGAALTGFGFSLVFPAL  323 (399)
T ss_pred             HHHHHHHHHHHHHHHHHhccHHH--------------------------------------HHHHHHHHHHhHHHHHHHH
Confidence            88888887777776666554443                                      1344557788888788887


Q ss_pred             HHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          396 RSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       396 ~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .....+..|+++||++.|+.+...++|..++|.+.|.+.+.. +++.       .+.+.+++.+++.+.....++++
T Consensus       324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~~~  392 (399)
T PRK05122        324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWF-GYPS-------IFLAAALAALLGLALTWLLYRRA  392 (399)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHH-------HHHHHHHHHHHHHHHHHHhcccc
Confidence            788889999999999999999999999999999999999875 5444       44566666666665555554443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=1e-32  Score=283.69  Aligned_cols=398  Identities=15%  Similarity=0.124  Sum_probs=278.6

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHH
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (484)
                      .+.++.+...+....+.+.+|.+..++        +.+..+.|++.+++.++.+++++++|+++||+|||+.++++.++.
T Consensus       171 i~~l~~~~~g~d~~~is~ilp~i~~~~--------gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~  242 (742)
T TIGR01299       171 VLGLALMADGVEVFVVGFVLPSAEKDL--------CIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVN  242 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            334444555566666778888887766        445567799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-----
Q 011514           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----  166 (484)
Q Consensus        92 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-----  166 (484)
                      +++.++++++++   ++.++++|++.|++. +...|...+++.|++|+++|++.+++......+|.++++.++..     
T Consensus       243 ~i~~ll~afa~s---~~~llv~R~l~G~g~-g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~  318 (742)
T TIGR01299       243 GFFAFFSSFVQG---YGFFLFCRLLSGFGI-GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY  318 (742)
T ss_pred             HHHHHHHHHHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999   889999999999866 66668999999999999999999999999999999998876532     


Q ss_pred             ------------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCC-------C--------
Q 011514          167 ------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN-------E--------  219 (484)
Q Consensus       167 ------------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------  219 (484)
                                  .+||+.+++.++.. +..++..+++||+|++...+++.+++.....+....+       .        
T Consensus       319 G~~~~~g~~~~~~gWR~l~~i~~lp~-ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~  397 (742)
T TIGR01299       319 GWSFQMGSAYQFHSWRVFVIVCAFPC-VFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHI  397 (742)
T ss_pred             cchhccccccccccHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHH
Confidence                        25899888877554 4445566779999986433322222211110000000       0        


Q ss_pred             ---CCCC-----c-cCcc--c----CC---CCchHHHHHHhhcc---chhHHHHHHHHHHhchhhhhHHHHHHHHhhh--
Q 011514          220 ---SNSP-----V-KIPV--C----KK---IPSIRDLICLLRSS---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--  276 (484)
Q Consensus       220 ---~~~~-----~-~~~~--~----~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  276 (484)
                         +..+     . ....  .    +.   .......++.++++   ++.+.+.+..++..+.+++...++|..+++.  
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~  477 (742)
T TIGR01299       398 KTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQA  477 (742)
T ss_pred             HHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0000     0 0000  0    00   00001112223332   3345566677778888889999999765431  


Q ss_pred             --c-----------------CcCh--------------------------------------------------------
Q 011514          277 --F-----------------HFNK--------------------------------------------------------  281 (484)
Q Consensus       277 --~-----------------g~~~--------------------------------------------------------  281 (484)
                        +                 +++.                                                        
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  557 (742)
T TIGR01299       478 DDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFE  557 (742)
T ss_pred             HHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhcc
Confidence              0                 0000                                                        


Q ss_pred             -------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          282 -------------------------------------NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       282 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                                                           ........+.+++.+++. ++.++++||+|||+++..+.++.+
T Consensus       558 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~-il~g~L~Dr~GRr~~l~~~~~lsa  636 (742)
T TIGR01299       558 NTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGN-IVSALLMDKIGRLRMLAGSMVLSC  636 (742)
T ss_pred             ccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHH
Confidence                                                 011233445567777777 778999999999999999999998


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      ++++++++..+...                                      +++..++.+++.+...+...++++|.+|
T Consensus       637 i~~ll~~~~~s~~~--------------------------------------ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       637 ISCFFLSFGNSESA--------------------------------------MIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHccHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88888777665443                                      1333345566666777888999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      ++.|++++|+.+....+|.+++|.++|.+.+.  +...       ++++.+++.+++.++..++++
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~--~~~~-------pf~i~a~~lll~~ll~~~LPE  735 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGI--TKAA-------PILFASAALACGGLLALKLPD  735 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH-------HHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999999999999988875  2222       456666666666666666643

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=1.3e-31  Score=262.60  Aligned_cols=335  Identities=11%  Similarity=0.129  Sum_probs=253.6

Q ss_pred             HHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHH
Q 011514           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (484)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~   99 (484)
                      .........+.+|.+.+++        +.+..+.|+..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.
T Consensus        32 ~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~  103 (394)
T PRK10213         32 LIIVEFLPVSLLTPMAQDL--------GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS  103 (394)
T ss_pred             HHHHHHHHHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH
Confidence            3334445566788877665        56667789999999999999999999999999999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHH
Q 011514          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQA  175 (484)
Q Consensus       100 ~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~  175 (484)
                      ++++   ++.+++.|+++|++. +...|...+++.|++|+|+|++++++.....++|..+||.+++.    ++||+.|++
T Consensus       104 ~~~~---~~~l~~~r~l~G~~~-g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~  179 (394)
T PRK10213        104 FANS---FSLLLIGRACLGLAL-GGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNA  179 (394)
T ss_pred             HHCh---HHHHHHHHHHHHHhh-HHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            9998   899999999999765 66778999999999999999999999999999999999988876    489999999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHH
Q 011514          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (484)
Q Consensus       176 ~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (484)
                      .+++.++..+......||+++++++                              ..++.+    ...++|.++...+..
T Consensus       180 ~~~l~~~~~l~~~~~~p~~~~~~~~------------------------------~~~~~~----~~l~~~~~~~~~~~~  225 (394)
T PRK10213        180 AAVMGVLCIFWIIKSLPSLPGEPSH------------------------------QKQNTF----RLLQRPGVMAGMIAI  225 (394)
T ss_pred             HHHHHHHHHHHHHHHCCCCCccccc------------------------------chhHHH----HHhcCHHHHHHHHHH
Confidence            8877766555555556664321100                              001111    245567777666655


Q ss_pred             HHHhchhhhhHHHH-HHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc
Q 011514          256 FFSGLSEGGMQASF-LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW  334 (484)
Q Consensus       256 ~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  334 (484)
                      ++.........++. |.|.+ .+|+++.+.+..+...+++..++. ++.+++.||.+++.............+.+....+
T Consensus       226 ~~~~~~~~~~~~~~~p~~~~-~~g~s~~~~g~~~~~~~~~~iig~-~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~~  303 (394)
T PRK10213        226 FMSFAGQFAFFTYIRPVYMN-LAGFGVDGLTLVLLSFGIASFVGT-SLSSFILKRSVKLALAGAPLVLAVSALVLTLWGS  303 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-hcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHhh
Confidence            55555555555665 55554 569999999999999999999998 7779999995444333333333333344433333


Q ss_pred             chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHH
Q 011514          335 SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGC  414 (484)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~  414 (484)
                      +.+.                                      +.....+.|++.+...+...+.+++..| +++++..+.
T Consensus       304 ~~~~--------------------------------------~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  344 (394)
T PRK10213        304 DKIV--------------------------------------ATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSI  344 (394)
T ss_pred             hHHH--------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHH
Confidence            3333                                      1334557788888888888888998887 667788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          415 ISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       415 ~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      .....++|..+||.++|.++|.. +...
T Consensus       345 ~~~~~~lg~~~G~~l~G~l~~~~-g~~~  371 (394)
T PRK10213        345 QVAVIQLANTCGAAIGGYALDNI-GLTS  371 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc-Chhh
Confidence            88899999999999999999975 5443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=6.8e-32  Score=264.62  Aligned_cols=373  Identities=12%  Similarity=0.118  Sum_probs=268.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |+++.++.+.++..++..+.....+...+|+        +.+....+++.+.+.+++.+..|++|+++||+|||++++.+
T Consensus         3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~   74 (393)
T PRK11195          3 KGFYAIMAAQFFSALADNALLFAAIALLKEL--------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIA   74 (393)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHH
Confidence            3567788899999998877777777776665        33345679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      .++.+++.+.+.+..+   .   ++.|+++|++. +...|+..+++.|++|+|+|++++++.+...++|.++||.+++.+
T Consensus        75 ~~~~~~~~~~~~~~~~---~---~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l  147 (393)
T PRK11195         75 NGIKLLGCLLMLFGIH---P---LLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGAL  147 (393)
T ss_pred             HHHHHHHHHHHHHHHH---H---HHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999888877666   3   67899999755 788899999999999999999999999999999999999999875


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhc
Q 011514          168 ---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (484)
Q Consensus       168 ---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (484)
                         .|+.++.+.+...++. .+..+.+||++++++++++                       +..+..++.++..+.+++
T Consensus       148 ~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~l~~  203 (393)
T PRK11195        148 ADPHAEAALAVCALIYLLA-ALFNLFIPRLGARRPGQSW-----------------------NPIALLRDFFHACRVLWR  203 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCcccccccCC-----------------------CHHHHHHHHHHHHHHHHh
Confidence               3455555555333333 3344567776533211100                       000001122233344667


Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.++......++............|.|+++.+|.++.+.|...+..+++..+++ +..+++.||.++++.+..+.. .+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~-~~~~~l~~~~~~~~~~~~g~~-~~  281 (393)
T PRK11195        204 DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGA-GAAARLVTLETVLRVLPAGIL-MG  281 (393)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH-HHHHHHhcCCcccchHHHHHH-HH
Confidence            7776665555555555555566677888998899999999999999999999998 777999999888887776643 33


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      +....+.+.++.+.                                      ......+.|++.+...+..++..++..|
T Consensus       282 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~~G~~~g~~~~~~~~~~q~~~~  323 (393)
T PRK11195        282 LVVLLMALQHSLLP--------------------------------------AYPLLILIGALGGFFVVPMNALLQHRGH  323 (393)
T ss_pred             HHHHHHHHHhHHHH--------------------------------------HHHHHHHHHHhhhhhhhhHHHHHHhhCc
Confidence            33333333333222                                      1334446777777777878888888766


Q ss_pred             CCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          405 PNE-QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       405 ~~~-~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      ++. +|++.++.+..++++..++..+.+.+...  +...       .+.+.++..++++...+..
T Consensus       324 ~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~  379 (393)
T PRK11195        324 VLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKL--GVPV-------VAVIVGFGLLVALAMALLW  379 (393)
T ss_pred             ccccchhHHHHHhHHHHHHHHHHHHHHHHHHHc--CCCH-------HHHHHHHHHHHHHHHHHHH
Confidence            554 79999999999999999999999866433  4444       3344444444544444433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=5.8e-32  Score=261.45  Aligned_cols=352  Identities=14%  Similarity=0.032  Sum_probs=254.6

Q ss_pred             HHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHH
Q 011514           20 WGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA   99 (484)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~   99 (484)
                      .......+.|.+|.+.+|+        +.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+......+.....
T Consensus         3 ~~~~~~~~~~~lp~i~~~~--------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~   74 (368)
T TIGR00903         3 SQAIWVTFSPVLSLVAEDI--------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL   74 (368)
T ss_pred             hhHHHHHHHhhHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            3445667888999998877        55667789999999999999999999999999999987766655555544333


Q ss_pred             hccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHHHH
Q 011514          100 YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQA  175 (484)
Q Consensus       100 ~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f~~  175 (484)
                      ..++   ++.+++.|+++|++. +.. +.....++|++|+|+|++++++.+.+..+|..+++.++..+    +||+.|++
T Consensus        75 ~~~~---~~~l~~~R~l~G~g~-~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~  149 (368)
T TIGR00903        75 DPFN---YEWLLACQLLAALGQ-PFL-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIP  149 (368)
T ss_pred             Hhcc---HHHHHHHHHHHHhHh-HHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence            3367   899999999999765 554 45667779999999999999999999999999999888764    99999999


Q ss_pred             HHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHH
Q 011514          176 ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVA  255 (484)
Q Consensus       176 ~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (484)
                      .+++.++..++.++.+||+|++++++                .+       .     ++..+.++.+.++|.++...+..
T Consensus       150 ~~~l~~~~~~~~~~~lp~~p~~~~~~----------------~~-------~-----~~~~~~~~~ll~~~~~~~~~~~~  201 (368)
T TIGR00903       150 IAAVAAAGIILVLAALPALPFQAAEG----------------FG-------F-----KDAVKEFGALAGRKDLWIIGAIL  201 (368)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC----------------cc-------h-----HHHHHHHHHHHcChhHHHHHHHH
Confidence            88888888888888899976543211                00       0     00011234466789999999999


Q ss_pred             HHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---hHH-HHHhHHHHHHHHHHHh
Q 011514          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---AKL-LSLGLFAACINMFICS  331 (484)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---~~~-~~~~~~~~~~~~~~~~  331 (484)
                      ++.......+.+++|.|+++. |++.. .+.......+.+.++.    ++++||..|   |+. ......+.++....+.
T Consensus       202 ~~~~~~~~~~~~wlp~~L~~~-g~s~~-~~~~~~l~~~~g~~g~----~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~  275 (368)
T TIGR00903       202 GFGVALFDNLAIWLEAALRPA-GLEDI-AGDAVALAILAGLIGV----AVIPDRVARAGLRSIYIRAAALLIAAFFLALA  275 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-CCChH-HHHHHHHHHHHHHHHH----HHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999774 78865 5666666666555554    566666543   333 2223333344443444


Q ss_pred             hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHH
Q 011514          332 ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKA  411 (484)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  411 (484)
                      ...+...                                      ......+.+++.....+..+++.+|.+|++.||++
T Consensus       276 ~~~~~~~--------------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~  317 (368)
T TIGR00903       276 FELNRLA--------------------------------------LFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKA  317 (368)
T ss_pred             HccccHH--------------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcc
Confidence            3333222                                      12233345555666667788899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          412 QGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       412 ~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      .|+.+..+++++.++|.+.+.+..   +...       .|.+.++..+++.+...
T Consensus       318 ~G~~~~~g~~~~~~~~~~~~~~~~---~~~~-------~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       318 AGAIGFTSRAISVALALAAMLFIS---SAEA-------YFTFLAILITIAFAIAL  362 (368)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhc---CHHH-------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999988773   2111       34555555555555543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=2.6e-32  Score=269.74  Aligned_cols=376  Identities=14%  Similarity=0.170  Sum_probs=267.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.+...++..+.+.++.....+..|.+.+++        +.+..+.|++.+.+.++..+++++.|.++||+|||+++..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~   82 (405)
T TIGR00891        11 WNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF--------GLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVT   82 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            45566778888999999999999999988776        4455667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.++++++++   ++.+++.|++.|++. +...+...+++.|+.|+++|++++++.+....+|..+++.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~  158 (405)
T TIGR00891        83 SIVLFSAGTLACGFAPG---YITMFIARLVIGIGM-GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL  158 (405)
T ss_pred             HHHHHHHHHHHHHHhcc---HHHHHHHHHHHHhhh-hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   888999999999765 66668899999999999999999999999999999999988765


Q ss_pred             h----h--hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH
Q 011514          167 L----S--TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (484)
Q Consensus       167 l----~--~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (484)
                      +    +  ||+.|++.++..++ .++....+||++++++++++.++..+ +.++..+.++  ..+    +..++.....+
T Consensus       159 l~~~~~~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~----~~~~~~~~~~~  230 (405)
T TIGR00891       159 VVPVWGDGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRT-MVDILYGGEH--RIA----NIVMTLAAAMV  230 (405)
T ss_pred             HHHhcCccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhh-HHHHHhccch--hhh----hhhhhhhHHhh
Confidence            3    4  99999887644444 34444557776543222111000000 0000000000  000    00000000000


Q ss_pred             H-hhcc-chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Q 011514          241 L-LRSS-VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (484)
Q Consensus       241 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  318 (484)
                      . ..++ +.+........+..........+.|.|+++.+|++..+.+.+.+..+++..++. ++.+++.||+++|+.+..
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~  309 (405)
T TIGR00891       231 QSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGG-CVFGFLGDWLGRRKAYVC  309 (405)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchhhhHH
Confidence            0 1111 112222333333344444566788999988889999999999999999999998 777999999999998877


Q ss_pred             hHHHHHHHHH-HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          319 GLFAACINMF-ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       319 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      +.....+... ......+.+.                                      ......+.+.......+...+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~  351 (405)
T TIGR00891       310 SLLAGQLLIIPVFAIGANVAV--------------------------------------LGLGLFFQQMLVQGIWGILPK  351 (405)
T ss_pred             HHHHHHHHHHHHHHhCCchHH--------------------------------------HHHHHHHHHHHHccchhhHHH
Confidence            7665533322 2222222222                                      122223445555555667778


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      .++|.+|+++||+++|+.+...+++..++|.+.|.+.|..++++
T Consensus       352 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~  395 (405)
T TIGR00891       352 HLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYG  395 (405)
T ss_pred             HHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            88999999999999999999999999999999999999874344

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2e-31  Score=260.86  Aligned_cols=349  Identities=13%  Similarity=0.139  Sum_probs=261.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.++.+....+....+.....|.+|.+.+|+        +.+..+.|+..+.+.++..++++++|+++||+|||+++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~   73 (382)
T PRK10091          2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDV--------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF   73 (382)
T ss_pred             cchHHHHHHHHHHHHhhHHHHHhChHHHHHHc--------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence            34677888889999999999999999998776        4455667999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.++++++++   ++.+++.|++.|++. +...+....++.|+.|+++|+++++....+..+|..+||.+++.
T Consensus        74 ~~~~~~~~~~l~~~~~~---~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~  149 (382)
T PRK10091         74 LVALCVIGNAMFTLSSS---YLMLAIGRLVSGFPH-GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY  149 (382)
T ss_pred             HHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999   899999999999755 66667788899999999999999999999999999999888765


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                          .+||++|++.+++..+..+..++.+||.+++++.                                 +.++.++. 
T Consensus       150 l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~---------------------------------~~~~~~~~-  195 (382)
T PRK10091        150 LSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEAKG---------------------------------GLREQFHF-  195 (382)
T ss_pred             HhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc---------------------------------CHHHHHHH-
Confidence                4899999999988777766666667775321100                                 01112222 


Q ss_pred             hccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      .+++..+......++..........+.+.|+++.+|+++.+.+.+.+..+++..++. ++.+++.||+++++.+..+..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~~r~~~~~~~~~~~~~  274 (382)
T PRK10091        196 LRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGN-LLSGRLSGRYSPLRIAAVTDFI  274 (382)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHh-HHHheeccccCchhHHHHHHHH
Confidence            334555544444444433444445567778887789999999999999999999998 7779999999999998888877


Q ss_pred             HHHHHHHHhhc-cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH-HHHh
Q 011514          323 ACINMFICSIS-WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR-SIVS  400 (484)
Q Consensus       323 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~  400 (484)
                      .+++.+.+... ++.+.                                      ......+.+.+.....+... ....
T Consensus       275 ~~i~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~~~~~~~~~~~~~  316 (382)
T PRK10091        275 IVLALLMLFFFGGMKTA--------------------------------------SLIFAFICCAGLFALSAPLQILLLQ  316 (382)
T ss_pred             HHHHHHHHHHHHhhHHH--------------------------------------HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            77776555432 22222                                      02222233343333333333 3444


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +..|++.++.+.  .+...++|+.+||.+.|.+.|...+++.
T Consensus       317 ~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~~~~~~~  356 (382)
T PRK10091        317 NAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTLGLAYNY  356 (382)
T ss_pred             hCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHcccCcch
Confidence            444555555543  4677899999999999999997546655

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=3e-31  Score=263.84  Aligned_cols=392  Identities=13%  Similarity=0.098  Sum_probs=260.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|.....+++.+++.++......+.|.+..+.+.++.++. ..........++..+++.+++++.|+++||+|||+++..
T Consensus        21 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~   99 (438)
T PRK09952         21 RRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLML   99 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHH
Confidence            4455666778888999888887777765554322222221 211111223345667788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhh-----HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH
Q 011514           87 PLTLSIIPLAILAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      +.++.+++.+++++++++..     .+.+++.|+++|++. |...|....++.|+.|+++|++..+..+.+..+|.++++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~-g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~  178 (438)
T PRK09952        100 TVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV-GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLST  178 (438)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999421     125888999999866 666678899999999999999999999999999988886


Q ss_pred             HhhH------------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCccc
Q 011514          162 LAAR------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (484)
Q Consensus       162 ~l~~------------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (484)
                      .+..            ..+||.+|++.++..++ .+......||++++.+++++              .++       .+
T Consensus       179 ~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~~~~~~~~~--------------~~~-------~~  236 (438)
T PRK09952        179 GLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESAEFEQQQHE--------------QAA-------AK  236 (438)
T ss_pred             HHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHHhh--------------ccc-------cc
Confidence            5543            25899999988765443 33344456676543221100              000       00


Q ss_pred             CCCCchHHHHHHhhccchhHHHH-HHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011514          230 KKIPSIRDLICLLRSSVTLSQAA-VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP  308 (484)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (484)
                      ++ .+.   .+.++++|+.+... ...++..+..+...++.|.|.++.+|++...........+....++. ++.++++|
T Consensus       237 ~~-~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~-~~~g~l~D  311 (438)
T PRK09952        237 KR-IPV---IEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTI-PCFAWLAD  311 (438)
T ss_pred             cc-CCH---HHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            00 111   11233445444443 34444555666677889999988889988765555556666666776 66799999


Q ss_pred             hhcchHHHHHhHHHHHHHHHHHhh---ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHH
Q 011514          309 ILGEAKLLSLGLFAACINMFICSI---SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFS  385 (484)
Q Consensus       309 ~~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  385 (484)
                      |++||+.+..+..+..++...+..   ..+...                                     .+.....+.+
T Consensus       312 r~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~l~~  354 (438)
T PRK09952        312 RFGRRRVYITGALIGTLSAFPFFMALEAQSIFW-------------------------------------IVFFSIMLAN  354 (438)
T ss_pred             HhCchHHHHHHHHHHHHHHHHHHHHHHcCChHH-------------------------------------HHHHHHHHHH
Confidence            999999887776655444332221   111111                                     0122233445


Q ss_pred             HhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          386 VLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      ++.+...+..+++..|.+|++.|+++.|+.+... .+++.++|.+.+.+.+...+ ++..     .+...+++.+++.+.
T Consensus       355 ~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~-~~~~-----~~~~~~~~~~i~~v~  428 (438)
T PRK09952        355 IAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGG-SWHS-----VAIYLLAGCLISAMT  428 (438)
T ss_pred             HHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-CchH-----HHHHHHHHHHHHHHH
Confidence            6666677778899999999999999999876665 48999999999999986422 2211     344555555555555


Q ss_pred             HHHhcc
Q 011514          465 SLMMSH  470 (484)
Q Consensus       465 ~~~~~~  470 (484)
                      .+..++
T Consensus       429 ~~~~~~  434 (438)
T PRK09952        429 ALLMKD  434 (438)
T ss_pred             HHHccc
Confidence            555543

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=1.3e-31  Score=262.01  Aligned_cols=364  Identities=14%  Similarity=0.114  Sum_probs=267.3

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH-HHHHHHH
Q 011514           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT-LPLTLSI   92 (484)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~-~~~~~~~   92 (484)
                      .+..++..++.++..|.+|.+.++.+       +.+..+.|++.+.+.+...+.+++.|.++||+||||.++ .+.+...
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~-------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~   75 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEV-------RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAA   75 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHccc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            34578888999999999999875432       555677899999999999999999999999999988765 4566667


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHH--HHHHHHHHHhHHhHHHHhhHh----
Q 011514           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASA--FGILLGVLSASFVCGTLAARF----  166 (484)
Q Consensus        93 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~g~~ig~~l~~~----  166 (484)
                      ++.++++++++   ++.+++.|++.|.+. +...|...++..|+.|+++|++.  .+......++|..+||.+++.    
T Consensus        76 ~~~~~~~~~~~---~~~l~~~~~~~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~  151 (375)
T TIGR00899        76 LACLLFAWNRN---YFLLLVLGVLLSSFA-STANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALG  151 (375)
T ss_pred             HHHHHHHhcch---HHHHHHHHHHHHhhh-hhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHh
Confidence            77888889988   788888999988654 56678888899999887777754  578888888999999988775    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccc
Q 011514          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (484)
Q Consensus       167 l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (484)
                      .+||++|++.+.+.++..+..++.+||+|+++++++                            +..+.++    ..++|
T Consensus       152 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~----~~~~~  199 (375)
T TIGR00899       152 FGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL----------------------------TRLEVRG----LLASR  199 (375)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc----------------------------Ccchhhh----hhcCc
Confidence            489999999988777777777777888654322110                            0001111    33445


Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      .++......++............|.|+++.+|.++.+.+...........++. +..+++.||+++|+.+..+.....+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       200 DTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFM-LLAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            55555554554444445556678889888889999998888777766666666 67799999999999887776665555


Q ss_pred             HHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          327 MFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .......++.+.                                      ......+.+++.+...+....+.+|..|+ 
T Consensus       279 ~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~g~~~~~~~~~~~~~~~~-  319 (375)
T TIGR00899       279 YTGLAADNSLWA--------------------------------------LLMLQLLNAIFIGILAGIGMLYFQDLMPG-  319 (375)
T ss_pred             HHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence            444433333333                                      13333456666777777778888888874 


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      +++++.|+.+...++|..++|.+.|.+.+.. +++.       .+.+.+++.+++.+...+.
T Consensus       320 ~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       320 RAGAATTLYTNTGRVGWIIAGSVGGILAERW-SYHA-------VYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchh-------HHHHHHHHHHHHHHHHhee
Confidence            6679999999999999999999999999876 5544       4566666666655555443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.7e-31  Score=263.15  Aligned_cols=379  Identities=12%  Similarity=0.039  Sum_probs=252.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (484)
                      +....++.+++.++...+....|.+.+++...+.+  ..+..+.+...+...++..++++++|+++||+|||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~  101 (432)
T PRK10406         24 IVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNT--TTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVC  101 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33445668888899888777777777665311112  2222344555666777777999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchh-----hHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           90 LSIIPLAILAYRRSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~~-----~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      +.+++.+++++++++.     ....+++.|+++|++. |...|...++++|+.|+++|+++.+..+.....|..+++.+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~-g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~  180 (432)
T PRK10406        102 MMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSV-GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVV  180 (432)
T ss_pred             HHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhh-hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998842     1246889999999765 667789999999999999999999998888888877777543


Q ss_pred             H------------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCC
Q 011514          165 R------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (484)
Q Consensus       165 ~------------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (484)
                      .            ..|||.+|++.++..++. +.....+||++++++++                           .++.
T Consensus       181 ~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~~~~~~~---------------------------~~~~  232 (432)
T PRK10406        181 VVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETSQQETRA---------------------------LKEA  232 (432)
T ss_pred             HHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCchHHHhh---------------------------hccc
Confidence            2            358999999887666544 33344466654321110                           0011


Q ss_pred             CchHHHHHHhhccchhHHHHHHHHH-HhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011514          233 PSIRDLICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (484)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  311 (484)
                      .+.++    +.++|+.+...+..++ .....+...+++|.|+++.+|++..+.+...+...+...+++ .+.++++||++
T Consensus       233 ~~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~-~~~G~l~Dr~g  307 (432)
T PRK10406        233 GSLKG----LWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQ-PLIGALSDKIG  307 (432)
T ss_pred             ccHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcC
Confidence            13344    4445665555444333 355566778899999988889999888888888888888888 55699999999


Q ss_pred             chHHHHHhHHHHHHHHHHHh--hc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHh
Q 011514          312 EAKLLSLGLFAACINMFICS--IS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVL  387 (484)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  387 (484)
                      ||+.+..+..+..+......  ..  .+...                                      ......+....
T Consensus       308 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~  349 (432)
T PRK10406        308 RRTSMLCFGSLAALFTVPILSALQNVSSPYA--------------------------------------AFGLVMCALLI  349 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHcCCcHHH--------------------------------------HHHHHHHHHHH
Confidence            99877665554333222111  11  11111                                      01111112222


Q ss_pred             hhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          388 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       388 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      .+...+....+.+|.+|++.|+++.|+.+...+. .+...|.+.+.+ +..+.+..       .++..++..+++.+..+
T Consensus       350 ~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~-------~~~~~~~~~~i~~~~~~  421 (432)
T PRK10406        350 VSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETA-------FFWYVTLMAVVAFLVSL  421 (432)
T ss_pred             HHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcH-------HHHHHHHHHHHHHHHHH
Confidence            2333445667889999999999999999987765 344577777744 54422222       23444445555555545


Q ss_pred             Hhcc
Q 011514          467 MMSH  470 (484)
Q Consensus       467 ~~~~  470 (484)
                      .+++
T Consensus       422 ~l~~  425 (432)
T PRK10406        422 MLHR  425 (432)
T ss_pred             Hhhh
Confidence            4433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=2.1e-31  Score=263.23  Aligned_cols=345  Identities=12%  Similarity=0.087  Sum_probs=266.7

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHH
Q 011514           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (484)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i   93 (484)
                      .+..++..++.++..|.+|.+.+++        +.+..+.++..+.+.++..+++++.|+++||+|||+++..+....++
T Consensus        19 ~l~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~   90 (406)
T PRK15402         19 VLFEFATYIANDMIQPGMLAVVEDF--------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL   90 (406)
T ss_pred             HHHHHHHHhhhhhHhcchHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            4444555567788899999988776        44556778999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhh
Q 011514           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LST  169 (484)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~  169 (484)
                      +.+++.++++   ++.+++.|+++|++. +...+...+++.|.+|+++|.+..++......+|..+||.+++.    .+|
T Consensus        91 ~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w  166 (406)
T PRK15402         91 TCLAILLAQS---IEQFTLLRFLQGIGL-CFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW  166 (406)
T ss_pred             HHHHHHHHcc---HHHHHHHHHHHHhHh-hhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc
Confidence            9999999998   888899999999755 66667889999999999999999999988888888999988765    489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhH
Q 011514          170 TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (484)
Q Consensus       170 ~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (484)
                      |+.|++.+++.++..+..++..||++++++++                            .+.++..+..+...++|.++
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~  218 (406)
T PRK15402        167 RGMFVLFAALAALSFFGLWRAMPETAGRVGEK----------------------------LSLKELGRDYKLVLKNRRFV  218 (406)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc----------------------------ccHHHHHHHHHHHHcCcHHH
Confidence            99999988887777666666677654321110                            00012233345567788888


Q ss_pred             HHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHH
Q 011514          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFI  329 (484)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~  329 (484)
                      ...+..++............|.|+++.+|+++.+.+........+..++. ++.+++.||+++|+.+..+..+..++...
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~-~~~g~l~~r~~~~~~~~~~~~~~~~g~~~  297 (406)
T PRK15402        219 AGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGN-LTLARLTSRRPLRSLIRMGLWPMVAGLLL  297 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            77776666665555666778888888889999998888777777777777 67799999999999988888777776666


Q ss_pred             Hhhcc----chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          330 CSISW----SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       330 ~~~~~----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +....    ..+.                        |             ......+.+++.+...+........ .++
T Consensus       298 ~~~~~~~~~~~~~------------------------~-------------~~~~~~~~g~g~~~~~~~~~~~~~~-~~~  339 (406)
T PRK15402        298 AALATVISSHAYL------------------------W-------------LTAGLSLYAFGIGLANAGLYRLTLF-SSD  339 (406)
T ss_pred             HHHHHHcccccHH------------------------H-------------HHHHHHHHHHHHHHHhhhHHHHHhh-hcc
Confidence            55432    1111                        0             1334456777777766666665543 345


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +++|++.+..+..+.++..+|+.+.+.+++..
T Consensus       340 ~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        340 VSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            89999999999999999999999999998864

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=8e-32  Score=264.29  Aligned_cols=358  Identities=15%  Similarity=0.175  Sum_probs=276.5

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Q 011514            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (484)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (484)
                      |+.+. +|.++.+....++...+.+...|.+|.+.++.+       +.+..+.|++.+.+.++..+.+++.|+++||+||
T Consensus         1 ~~~~~-~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~-------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~   72 (395)
T PRK10054          1 MNLSL-RRSTSALLASSLLLTIGRGATLPFMTIYLSRQY-------SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDK   72 (395)
T ss_pred             CCCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            54444 567788888999999999999999999886543       5566778999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH
Q 011514           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        81 k~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  160 (484)
                      |+++..+.+...++.++.+++++   ++.+++.|.+.|.+. +...+...++..|..|+++|++++++.....++|..+|
T Consensus        73 k~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~ig  148 (395)
T PRK10054         73 KRYMLLAITAFASGFIAIPLVNN---VTLVVLFFALINCAY-SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVG  148 (395)
T ss_pred             chhHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988   777788888888543 56667889999999999999999999999999999999


Q ss_pred             HHhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH
Q 011514          161 TLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (484)
Q Consensus       161 ~~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (484)
                      |.+++.+   +|+.+|++.+++.++..+...+.+||++++++++                         +  ++  . ++
T Consensus       149 p~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-------------------------~--~~--~-~~  198 (395)
T PRK10054        149 PPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-------------------------T--GS--V-WS  198 (395)
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-------------------------h--hh--h-hh
Confidence            9998874   7999999888777776666666566654322111                         0  00  0 11


Q ss_pred             HHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhh--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                       .+...++|.++...+..++..+.......+.+.|..+.  .+.+....+.............+ ...+++.||.++|+.
T Consensus       199 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~  276 (395)
T PRK10054        199 -PSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ-YSVGRRLNAANIRPL  276 (395)
T ss_pred             -hhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh-hHHHHHHccCCchhH
Confidence             12255678887777777776666655556666666433  35556666777777777666666 556899999999999


Q ss_pred             HHHhHHHHHHHHHHHhhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhH
Q 011514          316 LSLGLFAACINMFICSISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPS  394 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  394 (484)
                      +..+..+..++...+.+.. +.+.                                      ......+.+++.....|.
T Consensus       277 l~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~~~~p~  318 (395)
T PRK10054        277 MTAGTLCFVIGLVGFIFSGNSLLL--------------------------------------WGMSAAVFTVGEIIYAPG  318 (395)
T ss_pred             HHHHHHHHHHHHHHHHHcchHHHH--------------------------------------HHHHHHHHHHHHHHHHhh
Confidence            8888877777776665542 2332                                      133455777888877888


Q ss_pred             HHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          395 FRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       395 ~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ..+.+.+..|++.++++++..+ ...+|..+||.++|.++|+. ++..
T Consensus       319 ~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~-g~~~  364 (395)
T PRK10054        319 EYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL-PPWS  364 (395)
T ss_pred             HHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc-Chhh
Confidence            8899999999999999998765 67789999999999999987 5543

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7e-32  Score=268.49  Aligned_cols=359  Identities=13%  Similarity=0.107  Sum_probs=256.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.+...++..+.+.++.....+.+|.+.+++        +.+..+.+++.+++.++..+++++.|+++||+|||+++..
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~   88 (426)
T PRK12307         17 KNALFSAWLGYVFDGFDFMLIFYIMYLIKADL--------GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMW   88 (426)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            44566677778888888888889999888776        4445567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.++++++++   ++.+++.|+++|++. +...+....++.|++|+|+|+++.++...+.++|.++++.+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~g~-g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~  164 (426)
T PRK12307         89 SIVAYSVGTGLSGLASG---VIMLTLSRFIVGMGM-AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS  164 (426)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHH-hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence            99999999999999999   899999999999765 66667899999999999999999999999999999999877754


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                          .+||++|++... ..+..+......||++++++++.+             +++++.   +   ...+..+...+..
T Consensus       165 l~~~~~w~~~f~i~~~-~~~~~~~~~~~~p~~~~~~~~~~~-------------~~~~~~---~---~~~~~~~~~~~~~  224 (426)
T PRK12307        165 FAEAYGWRAAFFVGLL-PVLLVIYIRARAPESKEWEEAKLS-------------GKGKHS---Q---SAWSVFSLSMKGL  224 (426)
T ss_pred             HcccCCHHHHHHHHHH-HHHHHHHHHHHCCCChHHHHhhhh-------------cccccc---c---cchhhhhHHHHHH
Confidence                589999987553 323222222223443321111100             000000   0   0000111123335


Q ss_pred             hccchhHHHHHHHH---HHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          243 RSSVTLSQAAVVAF---FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       243 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                      .+++.++.......   ...........++|.|+++. |+++.+.+...+...++..++. ++.+++.||++||+....+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~-~~~g~l~dr~~~~~~~~~~  302 (426)
T PRK12307        225 FNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGN-IVWGLCADRIGLKKTFSIG  302 (426)
T ss_pred             HhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHH
Confidence            55566554333222   22222233566889988875 9999999998898899898888 7779999999999988888


Q ss_pred             HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHH--hhhhhhhHHHH
Q 011514          320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSV--LVVFATPSFRS  397 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~  397 (484)
                      ..+..+..+..........                                      ......+.+.  ......+....
T Consensus       303 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  344 (426)
T PRK12307        303 LLMSFLFIFPLFRIPQDNY--------------------------------------LLLGACLFGLMATNVGVGGLVPK  344 (426)
T ss_pred             HHHHHHHHHHHHHHccccH--------------------------------------HHHHHHHHHHHHhcccHhHHHHH
Confidence            7776655544433222111                                      0111112222  22223345567


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .+.|.+|+++||++.|+.+...++++.++|.+.|.+.+..
T Consensus       345 ~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~  384 (426)
T PRK12307        345 FLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITM  384 (426)
T ss_pred             HHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcc
Confidence            7889999999999999999999999999999999999876

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=3.7e-31  Score=260.08  Aligned_cols=352  Identities=13%  Similarity=0.111  Sum_probs=268.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      +++|..+..++..++.........+.+|.+.+++        +.+..+.|++.+.+.++..+++++.|+++||+|||+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~   75 (394)
T PRK03699          4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF--------NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQL   75 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            3455666777778888787788888899988776        55666789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      ..+.++.+++.++++++++   ++.+++.|+++|++. +...+...+++.|++|+++|+++++..+...++|..++|.+.
T Consensus        76 ~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~G~~~-g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~  151 (394)
T PRK03699         76 IFGFALMILAVAGLMFSHS---LALFSIAMFVLGVVS-GITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIA  151 (394)
T ss_pred             HHHHHHHHHHHHHHHHcch---HHHHHHHHHHHHHhh-HhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988   888899999999755 666678899999999999999999999888888888888776


Q ss_pred             Hh-----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          165 RF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       165 ~~-----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +.     .+||++|.+.+++.++..++.++  ++.|+.+++++                +++.    +      ..++  
T Consensus       152 ~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~----------------~~~~----~------~~~~--  201 (394)
T PRK03699        152 AYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPALGKHAP----------------KADK----P------VAKE--  201 (394)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccccccCc----------------cccC----c------cccc--
Confidence            53     48999999888766655444332  22222111100                0000    0      0000  


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                         ..++.++...+..++..........+.|.|+++.+|+|+.+.+.+.+...++..++. ++.+++.||+++|+.+...
T Consensus       202 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~l~~~  277 (394)
T PRK03699        202 ---KWGIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM-WIFSFIVRFFDLQRILTVL  277 (394)
T ss_pred             ---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH-HHHHHHHHHhchhhHHHHH
Confidence               012445555566666666677788899999998889999999999999999888988 7779999999999988777


Q ss_pred             HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514          320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV  399 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  399 (484)
                      ..+..+...++...++.+.                                      ........|++.+...+...+..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~G~~~~~~~~~~~~~~  319 (394)
T PRK03699        278 AGLALVLMYLFVNTDDPSH--------------------------------------LLYAILGLGFFSSAIYTTIITLG  319 (394)
T ss_pred             HHHHHHHHHHHHHcCCchH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            7666666555554444333                                      13344466776777777777777


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          400 SKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       400 ~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      .+..| +++++..|......++|..++|.+.|.+.|.. +...
T Consensus       320 ~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~-g~~~  360 (394)
T PRK03699        320 SQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHF-GLQA  360 (394)
T ss_pred             HHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh-Cchh
Confidence            77776 45678889999999999999999999999986 5554

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=5.7e-31  Score=263.24  Aligned_cols=361  Identities=13%  Similarity=0.062  Sum_probs=247.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHhhhhccchh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~  125 (484)
                      +.+..+.|+..+.+.++..+++++.|+++||+|||++++.+.++.+++.+++++.+.. ..++.+++.|++.|++. +..
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~-g~~  137 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ-GMG  137 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHH-hcc
Confidence            5566778999999999999999999999999999999999999999999988876411 11677889999999765 556


Q ss_pred             hHhhhHHHhhcCCccchhHHHHHHHHHHHhHH-hHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514          126 NCLALAYVADNISERQRASAFGILLGVLSASF-VCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (484)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~  200 (484)
                      .|.....+.|++|+++|++++++.+.+.++|. +.+|+++..    .+||+.|++.+++.++..++..+++||++++...
T Consensus       138 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~  217 (452)
T PRK11273        138 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGL  217 (452)
T ss_pred             chHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCC
Confidence            67777889999999999999999999999886 456654322    3899999998888777777777778887654321


Q ss_pred             CCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH-HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCc
Q 011514          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI-CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (484)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (484)
                      +++.+.    +   .+..++.++   + +++..+.++.+ +...+++.++...+..++..........++|.|+++..|+
T Consensus       218 ~~~~~~----~---~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~  286 (452)
T PRK11273        218 PPIEEY----K---NDYPDDYNE---K-HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHF  286 (452)
T ss_pred             CChhhh----h---hcccccccc---c-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            111000    0   000000000   0 00111233322 3356788888888887777777777888999999998899


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchHHH-HHhHHHHHHHHHHHhhcc--chhhHHHhhhhHHHHHHHHh
Q 011514          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL-SLGLFAACINMFICSISW--SAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f  354 (484)
                      +..+.+.......++..++. ++.++++||+  +||+.. .....+..++...+....  +.+.                
T Consensus       287 s~~~~~~~~~~~~~~~~~g~-~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----------------  349 (452)
T PRK11273        287 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV----------------  349 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH----------------
Confidence            99998888888888888888 7779999998  444332 222222233332222211  1111                


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH-HHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV-SPLIFSPL  433 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~-gp~i~g~l  433 (484)
                                            ........+.......+....+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+
T Consensus       350 ----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l  407 (452)
T PRK11273        350 ----------------------DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  407 (452)
T ss_pred             ----------------------HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHH
Confidence                                  0112223333322223334456679999999999999999999998765 79999999


Q ss_pred             HHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          434 TALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      .|+. +++.       .|.+.+++.+++++...
T Consensus       408 ~~~~-g~~~-------~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        408 VDFF-GWDG-------GFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHh-cchH-------HHHHHHHHHHHHHHHHH
Confidence            9987 5554       44555555555555444

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=8.7e-31  Score=263.93  Aligned_cols=379  Identities=13%  Similarity=0.086  Sum_probs=283.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.++.++.+.++..++.....+.+|.+.+++        +.+..+.|++.+.+.++..++.+++|+++||+|||++++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~   80 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSL--------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT   80 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence            45677788888999999999999999999876        4555667899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.+++.++++   ++.+++.|+++|++. +...|...+++.|.+|+++|+++.+......++|..+||.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~  156 (471)
T PRK10504         81 AIVLFTLGSLFCALSGT---LNELLLARVLQGVGG-AMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL  156 (471)
T ss_pred             HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            99999999999999888   888899999999765 66778899999999999999999999999999999999988876


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccc---------cccccCCCCCCCCc---------
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITE---------ETEGVNQNESNSPV---------  224 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---------  224 (484)
                          .+||+.|++......+..+......|+++....+ .|.......         ..++.+........         
T Consensus       157 l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (471)
T PRK10504        157 LVEYASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRR-FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGV  235 (471)
T ss_pred             HHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHH
Confidence                4899999998877777666666656654322211 111000000         00000000000000         


Q ss_pred             ------cCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHH
Q 011514          225 ------KIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (484)
Q Consensus       225 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  298 (484)
                            ..++.+..++..+ .+ +++||.++......++..........+.|+|+++.+|.++.+.++......++..++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~-~~-l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~  313 (471)
T PRK10504        236 VALLLYLLHARNNNRALFS-LK-LFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGM  313 (471)
T ss_pred             HHHHHHHHHHhcCCCCccC-HH-HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence                  0000000011111 11 567788888888888877777777778999999878999999998888877777777


Q ss_pred             HHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccc-hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccch
Q 011514          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS-AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQV  377 (484)
Q Consensus       299 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  377 (484)
                      . .+.+++.||+|+|+.+..+..+.++...++.+... .+.                        +.            .
T Consensus       314 ~-~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~------------~  356 (471)
T PRK10504        314 K-RIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWY------------------------YL------------L  356 (471)
T ss_pred             H-HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccH------------------------HH------------H
Confidence            6 66699999999999998888877776665554321 111                        00            0


Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .....+.|++.+...+..+....+.+|++.+|+++|+.++.+.+|..+|+.+.|.+.+..
T Consensus       357 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~  416 (471)
T PRK10504        357 PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLF  416 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            223345567777778888889999999999999999999999999999999999999886

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=100.00  E-value=6.6e-31  Score=261.94  Aligned_cols=378  Identities=16%  Similarity=0.195  Sum_probs=305.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      ++|.+..++.+.++..++..+....++.++.+.        +-|+...|++.++..++.++.+++.|.++||++|||+++
T Consensus         8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~l--------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili   79 (524)
T PF05977_consen    8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQL--------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI   79 (524)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence            457888999999999999999999999998876        445567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHh
Q 011514           86 LPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      .+.++.++..+..++.  .+....+.+++.-++.|++. +...|+.++++.|..|+|+..+++++.+...+++.++||.+
T Consensus        80 ~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~-a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPal  158 (524)
T PF05977_consen   80 LSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGS-AFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPAL  158 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchH
Confidence            9998877665544432  12122688899999999754 88889999999999999999999999999999999999999


Q ss_pred             hHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +|.+    |-.+.|.+.++..++..... ...+.++++++.                          +.++..+++++.+
T Consensus       159 gG~Lva~~G~~~~f~inalsfl~~i~~l-~~~~~~~~~~~~--------------------------~~e~~~~~l~~G~  211 (524)
T PF05977_consen  159 GGILVAFFGAAAAFLINALSFLISILAL-LRWKPPPPPSSL--------------------------PRERFFSALREGL  211 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcccccccccc--------------------------chhhhhhhHHHHH
Confidence            9873    66888888886555443333 333332211111                          1122345678888


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                      +..+++|.+...++..++..+........+|.+.++.+|.++...|++++..+++++++. ++.+++.+|+++++++..+
T Consensus       212 ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Ga-l~~~~l~~~~~~~~lv~~~  290 (524)
T PF05977_consen  212 RYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGA-LLLPRLRRRLSSRRLVLLA  290 (524)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhhHHH
Confidence            889989988888877777777777778889999999999999999999999999999999 6679999999999998889


Q ss_pred             HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514          320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV  399 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  399 (484)
                      .+..+++++.+++.++.+.                                      .....++.|++........++.+
T Consensus       291 ~~~~a~~~~~lal~~~~~~--------------------------------------~~~~l~l~G~~~~~~~~~~~t~~  332 (524)
T PF05977_consen  291 SLLFALALLLLALSPSFWL--------------------------------------ALIALFLAGAAWIIANSSLNTLV  332 (524)
T ss_pred             HHHHHHHHHHHhcchHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888887776                                      24455577888888888899999


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          400 SKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       400 ~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      ++.+|++.||++++++++....+..+|..+.|.+.+.. +...       .+.+++++.+++.....
T Consensus       333 Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~-g~~~-------al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  333 QLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF-GVRT-------ALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHH-------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999986 5443       34555555555444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=2.3e-31  Score=260.11  Aligned_cols=351  Identities=15%  Similarity=0.098  Sum_probs=263.8

Q ss_pred             HHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccc
Q 011514           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS  103 (484)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~  103 (484)
                      .....+..|.+.+++        +.+..+.|++.+++.++..+++++.|.++||+|||+++..+.++.+++.++++++++
T Consensus        19 ~~~~~~~~~~~~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~   90 (377)
T TIGR00890        19 VYTWTLLAPPLGRYF--------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADS   90 (377)
T ss_pred             HhhhhhHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHH
Confidence            345567778777666        556677899999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHH
Q 011514          104 ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIV  179 (484)
Q Consensus       104 ~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~  179 (484)
                         ++.+++.|++.|++. +...+.....+.|+.| |+|+++.++.....++|..+++.+.+.    .+||+.|++.+++
T Consensus        91 ---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~  165 (377)
T TIGR00890        91 ---LAALYLTYGLASAGV-GIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII  165 (377)
T ss_pred             ---HHHHHHHHHHHhHHH-HHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHH
Confidence               889999999999755 5555677788888887 679999999999999998765444433    3799999999988


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHh
Q 011514          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (484)
Q Consensus       180 ~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (484)
                      .++..+..++.+||+++++++++                ++       .+++..+    .+...++|.++...+..++..
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~----------------~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~  218 (377)
T TIGR00890       166 FLLVIVLGAFLIGYPPGQLIKTN----------------IE-------VSVKDYT----VWEMLRTPQFWVLYLSFFLNA  218 (377)
T ss_pred             HHHHHHHHHHheecCchhccccC----------------cc-------cchhhhh----HHHHHcCccHHHHHHHHHHHh
Confidence            88877777776766543221110                00       0000011    122456677776666666665


Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhH
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI  339 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (484)
                      ........+.+.|.++ +|.+..+.+...+...+...+++ +..+++.||++||+.+..+..+..++.+.+...++....
T Consensus       219 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (377)
T TIGR00890       219 VSGLLLIGLYKPYGQS-LGLSDGFLVLAVSISSIFNGGGR-PFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDV  296 (377)
T ss_pred             HHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhH
Confidence            5555556667777655 58888888899999999999988 777999999999999888888888877766655432210


Q ss_pred             HHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHH
Q 011514          340 KIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS  419 (484)
Q Consensus       340 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~  419 (484)
                                .                          ......+.+++.+...+...++..|.+|+++|+++.|+.+...
T Consensus       297 ----------~--------------------------~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  340 (377)
T TIGR00890       297 ----------L--------------------------FLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAK  340 (377)
T ss_pred             ----------H--------------------------HHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHH
Confidence                      0                          0222335566666666677788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHH
Q 011514          420 SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMV  460 (484)
Q Consensus       420 ~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (484)
                      ++|..++|.+.|.+.+.. ++..       .|.+.+++.++
T Consensus       341 ~~g~~~~~~~~g~l~~~~-g~~~-------~f~~~~~~~~~  373 (377)
T TIGR00890       341 AVAGIFGGLIASHALTEI-GFEY-------TFIVTGAFALT  373 (377)
T ss_pred             HHHHHHHHHHHHHHHhhh-chhh-------HHHHHHHHHHH
Confidence            999999999999999876 5554       44555555444

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=5.9e-31  Score=258.81  Aligned_cols=366  Identities=14%  Similarity=0.139  Sum_probs=261.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      +++.+..+.+..++..++.++..|.+|.+.++.+       +.+..+.|++.+.+.++..++++++|+++||+||||++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~l-------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~   85 (392)
T PRK12382         13 ANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDL-------GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSAL   85 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhc-------CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHH
Confidence            4667778888889999999999999998875443       555677899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hccc--hhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH
Q 011514           86 LPLTLSIIPLAILA---YRRS--ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        86 ~~~~~~~i~~~~~~---~~~~--~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  160 (484)
                      .+.+...++.+.+.   ..++  ...++.+++.|+++|++. +...+...+++.|+.|+|+|++++++.+.+.+.|..+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g  164 (392)
T PRK12382         86 QGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGE-SQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAG  164 (392)
T ss_pred             HHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHH
Confidence            99887776654332   2211  112788999999999755 66667888999999999999999999999999999999


Q ss_pred             HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      |.+++.    .+||..+.+..+..++.... ....||+++   ++                            +++++.+
T Consensus       165 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~----------------------------~~~~~~~  212 (392)
T PRK12382        165 APLGLLLHSHFGFAALALTTMVLPLLAWAF-NGTVRKVPA---HA----------------------------GERPSLW  212 (392)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHH-HHhccCCCC---Cc----------------------------ccCchHH
Confidence            988875    47887766554333222211 111222111   00                            0001222


Q ss_pred             HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +..+.+++ +.     +..++..........+.|.|+++. |++.  .+......+++..+++ +..+++.||+++|+.+
T Consensus       213 ~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~  282 (392)
T PRK12382        213 SVVGLIWK-PG-----LGLALQGVGFAVIGTFVSLYFASK-GWAM--AGFTLTAFGGAFVLMR-VLFGWMPDRFGGVKVA  282 (392)
T ss_pred             HHHHHHHH-hH-----HHHHHHHHHHhHHHHHHHHHHHhc-CCch--hHHHHHHHHHHHHHHH-HHHHHHHHhcCCCeeh
Confidence            32222221 11     122223334445566778888764 6654  3555666677777777 6679999999999998


Q ss_pred             HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          317 SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      ..+..+..++...+.+.++.+.                                      ......+.+++.+...+...
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~  324 (392)
T PRK12382        283 IVSLLVETVGLLLLWLAPTAWV--------------------------------------ALAGAALTGAGCSLIFPALG  324 (392)
T ss_pred             HHHHHHHHHHHHHHHHcccHHH--------------------------------------HHHHHHHHHHHHHhHHHHHH
Confidence            8888888887777666554433                                      13344567777777788888


Q ss_pred             HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          397 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      +...+..|+++||++.|+.+....++..++|.+.|.+.|+. +++.       .|.+.+++.+++....+.
T Consensus       325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        325 VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSF-GYPS-------VFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchH-------HHHHHHHHHHHHHHHHHh
Confidence            88899999999999999999999999999999999999986 5554       445665555555555443

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=1.7e-30  Score=256.05  Aligned_cols=376  Identities=12%  Similarity=0.130  Sum_probs=267.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      ++|.+....++.++...+.+...+.++.+.+|+        +.+..+.|++.+.+.++..+++++.|+++||+||||++.
T Consensus        11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~   82 (402)
T TIGR00897        11 IPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKAL--------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMM   82 (402)
T ss_pred             CCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHh--------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence            577888899999999999988888888888765        455567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH---hc-cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHH-hHH
Q 011514           86 LPLTLSIIPLAILA---YR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF-VCG  160 (484)
Q Consensus        86 ~~~~~~~i~~~~~~---~~-~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~-~ig  160 (484)
                      .+..+.+++.+++.   .. ++   ++.+++.|++.|++. +...+...+.+.|..|+|+|++++|+.+...++|. ++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~i~G~g~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g  158 (402)
T TIGR00897        83 IGLLLWCVGHAAFIVFGLGHAN---YPLILLFYGIRGLGY-PLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFG  158 (402)
T ss_pred             HHHHHHHHHHHHHHHHhccCcc---HHHHHHHHHHHHcch-HHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999988876553   22 45   677889999999755 55556778889999999999999999999999996 688


Q ss_pred             HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      |.+++.    .||+..++.......+..++..+..+|.+++++++                  +        +++.++.+
T Consensus       159 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~--------~~~~~~~~  212 (402)
T TIGR00897       159 SYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ------------------T--------REKFSELG  212 (402)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCccccc------------------C--------CcchhhHH
Confidence            888764    46665555444333333333444444432211100                  0        00011222


Q ss_pred             HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +..+.+.++|.++...+..++.........++.|.|.++ +|+++.+.+.......++..++. +..++++||+++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~  290 (402)
T TIGR00897       213 KAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFN-VIFGIVGDKLGWMNTV  290 (402)
T ss_pred             HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHhhcchhHH
Confidence            334456778888887777777777777888899999876 69999998888888889899998 6679999999988765


Q ss_pred             H-HhHHHHHHHHHHHhhc-----cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhh
Q 011514          317 S-LGLFAACINMFICSIS-----WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVF  390 (484)
Q Consensus       317 ~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  390 (484)
                      . .+.....+....+...     ++.+.                                      ......+.|.+.+.
T Consensus       291 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~--------------------------------------~~~~~~~~G~~~~~  332 (402)
T TIGR00897       291 RWFGGVGCGIFTLALYYIPQHFGHSFAV--------------------------------------ALIIAIALGIFLAG  332 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcHHH--------------------------------------HHHHHHHHHHHHHH
Confidence            3 2333333322222211     11222                                      12333455555554


Q ss_pred             hhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          391 ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      ..+ ......+. ++++||++.|+.+...++++.++|.+.|.+.|.. +...       .+.+.+++.+++.....+.|
T Consensus       333 ~~~-~~~~~~~~-~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-g~~~-------~~~~~a~~~~i~~~~~~~~~  401 (402)
T TIGR00897       333 YVP-LAAVFPTL-APKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF-GAIG-------VVWIFAALYVVSAFLTAFIR  401 (402)
T ss_pred             HHH-HHHHHHhh-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chHH-------HHHHHHHHHHHHHHHHHHhc
Confidence            444 34555565 4578999999999999999999999999999986 4333       44566666666555555443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=3.9e-32  Score=263.13  Aligned_cols=343  Identities=24%  Similarity=0.313  Sum_probs=265.9

Q ss_pred             HHHHHHHHHHHHHhhHhhHHH-HHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITD-VTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (484)
                      +++..++..++.....+.+|. +.+++        +.+..+.|++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus         1 L~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~   72 (352)
T PF07690_consen    1 LFLAFFLSGFGFSIISPALPLYLAEEL--------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLF   72 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHHCCS--------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHcc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhh
Confidence            356778888999999999994 44332        445556799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh----
Q 011514           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (484)
Q Consensus        92 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----  167 (484)
                      +++.++..++++   .+.+++.|++.|++. +...+...+++.|++|+|+|++++++.+...++|.++||.+++.+    
T Consensus        73 ~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  148 (352)
T PF07690_consen   73 ALGSLLLAFASN---FWLLLIARFLLGIGS-GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYF  148 (352)
T ss_dssp             HHHHHHHHHHCC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHC
T ss_pred             hhHHHHhhhhhh---HHHHhhhcccccccc-ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcc
Confidence            999666666677   678999999999765 777789999999999999999999999999999999999999874    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccch
Q 011514          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (484)
                      +||++|++.+++.++..++...++++++++++++++.++.                     .+++++.++.++.++++|.
T Consensus       149 ~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~  207 (352)
T PF07690_consen  149 GWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE---------------------SKKPKPLKPGFKSLFKNPV  207 (352)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT-----------------------HHHCCCH-CTHHHHHHC
T ss_pred             ccccccccccchhhhhhhhHhhhhhhcccccccccccccc---------------------cccccccccccccccccch
Confidence            7999999999888888775555566655544332110000                     0011111222333666677


Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcC-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      ++......++..+.......+.|.|+++.+|++ ..+.+......++...++. ++.+++.||+++++..........+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~  286 (352)
T PF07690_consen  208 LWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGS-LLAGRLSDRFGRRRRLLIAILLLILG  286 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            765555666666677778889999988888999 7888999999999999998 77799999999888777777666666


Q ss_pred             HHHHhhccch---hhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc
Q 011514          327 MFICSISWSA---WVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV  403 (484)
Q Consensus       327 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  403 (484)
                      ...+......   ..                                      ......+.|++.+...+...+...+.+
T Consensus       287 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~  328 (352)
T PF07690_consen  287 ALGLLLLPFSSSPVW--------------------------------------LIIALFLIGFGFGIVFPILFSLIQELV  328 (352)
T ss_dssp             HHHHCCSHHHCHHHH--------------------------------------HHHHHHHHHHHHHHHCHHHHHHHHCCC
T ss_pred             HHHHHHHHHhhhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            6655544332   22                                      134555788888889999999999999


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHH
Q 011514          404 GPNEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       404 p~~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                      |++++|++.|+.+...+++..+||
T Consensus       329 ~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  329 PPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCC
Confidence            999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=1.3e-30  Score=259.30  Aligned_cols=362  Identities=13%  Similarity=0.028  Sum_probs=242.2

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHH-HHHHHHHHHHHHHHhhhhhcccccCchhH
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSG-FQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g-~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~   83 (484)
                      .|++....++++.+++.++.....+..|.+.+|+   +.++.+......+ .......+...+++++.|+++||+|||+.
T Consensus        12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~   88 (434)
T PRK15075         12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTF---FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG   88 (434)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH
Confidence            3456677788899999999999999999998887   4433333211111 12233344556788999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhccchhh-----HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHh
Q 011514           84 LTLPLTLSIIPLAILAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFV  158 (484)
Q Consensus        84 l~~~~~~~~i~~~~~~~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~  158 (484)
                      ++.+.++..++.+++++++++..     ...+++.|+++|++. +...+....+++|++|+++|++++++.+...++|..
T Consensus        89 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~-g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~  167 (434)
T PRK15075         89 LIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSA-GVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV  167 (434)
T ss_pred             HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccc-cccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH
Confidence            99999999999999999998321     114689999999765 666677889999999999999999999988888777


Q ss_pred             HHHHhhHh------------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccC
Q 011514          159 CGTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKI  226 (484)
Q Consensus       159 ig~~l~~~------------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (484)
                      +|+.+++.            .+||++|++..... ..........||+++..+++                  +      
T Consensus       168 ~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~------------------~------  222 (434)
T PRK15075        168 FAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARK------------------H------  222 (434)
T ss_pred             HHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhh------------------h------
Confidence            77665543            48999998765332 22222222223321100000                  0      


Q ss_pred             cccCCCCchHHHHHHhhccchhHHH-HHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011514          227 PVCKKIPSIRDLICLLRSSVTLSQA-AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPL  305 (484)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (484)
                           +.+.++.++...++++.+.. ....++..........+.|.|+++.+|++..+.+.......++..++. ++.++
T Consensus       223 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~  296 (434)
T PRK15075        223 -----RPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWL-PIGGA  296 (434)
T ss_pred             -----ccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence                 00111112223333333322 233333444555677889999998889999988888888888888888 67799


Q ss_pred             hhhhhcchHHHHHhHHHHHHHHH-HHhh-ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHH
Q 011514          306 LAPILGEAKLLSLGLFAACINMF-ICSI-SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTA  383 (484)
Q Consensus       306 l~~~~g~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (484)
                      ++||++||+....+..+..+... .... ......                        +            .......+
T Consensus       297 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~------------~~~~~~~~  340 (434)
T PRK15075        297 LSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSF------------------------A------------RMLAVELW  340 (434)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCch------------------------H------------HHHHHHHH
Confidence            99999999987765544332211 1111 111111                        0            00112223


Q ss_pred             HHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q 011514          384 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALF  437 (484)
Q Consensus       384 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~  437 (484)
                      .+++.+...+....+..|..|++.|+++.|+.+..... ++.++|.+.|.+.|..
T Consensus       341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            44555555666667889999999999999997665554 5888999999999986

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=2.3e-31  Score=269.45  Aligned_cols=375  Identities=11%  Similarity=0.090  Sum_probs=288.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ....++++.++..++..+..+.+|.+.+++        +.+..+.|++.+.+.++..++.++.|+++||+|||+.+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDL--------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLIST   74 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence            455667788889999999999999998776        334456699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh--
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~--  166 (484)
                      ++..++.++++++++   ++.+++.|+++|++. +...+...+++.|++|+++|++++++......+|..+||.+++.  
T Consensus        75 ~~~~~~~~~~~~~~~---~~~l~~~~~~~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~  150 (485)
T TIGR00711        75 FAFTLGSLLCGVAPN---LELMIIFRVIQGFGG-GPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII  150 (485)
T ss_pred             HHHHHHHHHHhCcCC---HHHHHHHHHHHHhhh-hhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence            999999999999999   889999999999765 67778999999999999999999999999999999999998876  


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCccc---------ccccccCCCCCCCCcc----------
Q 011514          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIIT---------EETEGVNQNESNSPVK----------  225 (484)
Q Consensus       167 --l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~----------  225 (484)
                        .+||+.|++.+.+.++..+...+..||+++.++++.|..+...         ....+.++.++.++..          
T Consensus       151 ~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (485)
T TIGR00711       151 ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLV  230 (485)
T ss_pred             cCcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHH
Confidence              4899999998888877777777777775443222211100000         0000000111100000          


Q ss_pred             ------CcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHH
Q 011514          226 ------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (484)
Q Consensus       226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (484)
                            ..+.+++++..+ .+ ..++|.++...+..++..+.......+.|.|+++.+|+++.+.+.......++..++.
T Consensus       231 ~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~  308 (485)
T TIGR00711       231 AIIAFVVWELTDDNPLVD-LR-LFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSS  308 (485)
T ss_pred             HHHHHHHHHHcCCCCccC-HH-HHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence                  000011111111 11 4566777777777788777778888899999999999999999999999999888888


Q ss_pred             HHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhc--cc--hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhcc
Q 011514          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICSIS--WS--AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFM  375 (484)
Q Consensus       300 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  375 (484)
                       ++.+++.||+++|+.+..+..+.+++...+.+.  .+  .+.                                     
T Consensus       309 -~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  350 (485)
T TIGR00711       309 -PIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLA-------------------------------------  350 (485)
T ss_pred             -HHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHH-------------------------------------
Confidence             777999999999999988888888877776532  11  111                                     


Q ss_pred             chhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          376 QVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       376 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                       ......+.|++.+...+.......+..|++++|++.|+.+..+.+|+.+|+.+.|.+.++
T Consensus       351 -~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       351 -IALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             133345677888877777777778889999999999999999999999999999999875

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.9e-30  Score=254.74  Aligned_cols=351  Identities=16%  Similarity=0.125  Sum_probs=269.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      +++....+....++...+..+..|.+|.+.+++        +.+..+.|++.+.+.++..+++++.|+++||+|||+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~   74 (385)
T TIGR00710         3 AKAFALLLGCLSILGPLGIDMYLPAFPEIAADL--------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLL   74 (385)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHH
Confidence            344555555566777788899999999998776        445567799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      .+.++.+++.+++.++++   ++.+++.|++.|++. +...+...+++.|++|+++|++++++.+....+|..+||.+++
T Consensus        75 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~  150 (385)
T TIGR00710        75 LGLFIFALSSLGLALSNN---IETLLVLRFVQAFGA-SAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGG  150 (385)
T ss_pred             HHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHcch-hHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998   888999999999755 6677889999999999999999999999999999999998887


Q ss_pred             h----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHH
Q 011514          166 F----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (484)
Q Consensus       166 ~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (484)
                      .    .+||..|++.+++..+..+..++..||++++++++                             +.++..+..+.
T Consensus       151 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~  201 (385)
T TIGR00710       151 YILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYEARI-----------------------------QISTYFETFLL  201 (385)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-----------------------------CHHHHHHHHHH
Confidence            6    48999999988777777766666677654322111                             00111222344


Q ss_pred             hhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      ..++|+++...+...+..........+.|.++++.+|+++.+.+.+.....++..++. ++.+++.||+++|+.+..+..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~~~~  280 (385)
T TIGR00710       202 LLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGG-FLNGRFIKKWGAKSLLRMGLI  280 (385)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHH
Confidence            6677887777766666666666677778888888889999999999999999888888 777999999999998888777


Q ss_pred             HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          322 AACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +..++...+........                     ...+            .......+.+++.+...+.......|
T Consensus       281 ~~~~~~~~~~~~~~~~~---------------------~~~~------------~~~~~~~~~g~~~~~~~~~~~~~~~~  327 (385)
T TIGR00710       281 LFAVSAVLLEITAILGL---------------------GSWA------------MIIGPMMFVGIGNSMISSIAMAYALE  327 (385)
T ss_pred             HHHHHHHHHHHHHHhcc---------------------chHH------------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            76666555543221110                     0000            01233446677777778888888888


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSP  432 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~  432 (484)
                      ..| ++++++.++.+.....++.+.+.+.+.
T Consensus       328 ~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~  357 (385)
T TIGR00710       328 DFP-HVAGTASALFGTLRLVLGAIVGYLVSL  357 (385)
T ss_pred             cCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            877 679999999998887766666655653

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=3.3e-31  Score=268.38  Aligned_cols=387  Identities=13%  Similarity=0.105  Sum_probs=250.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ......++.+.+.++........|.+..+..   .++...+..+.+++.+.+.++..++++++|+++||+|||+.+..+.
T Consensus        17 ~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~   93 (502)
T TIGR00887        17 AIVIAGVGFFTDSYDLFCISLVTKMLGYVYY---HGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMEL   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence            3445566778888888888888887665432   1223455667799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchh---hHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           89 TLSIIPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      ++..++.++++++++..   .++.++++|+++|++. +...+....+++|++|+++|+++.++.+....+|.++|+.++.
T Consensus        94 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~-g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~  172 (502)
T TIGR00887        94 IIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGI-GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVAL  172 (502)
T ss_pred             HHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888876421   1478899999999866 6666889999999999999999999999999999988887654


Q ss_pred             h---------------------------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCC-Cccc---cccc-
Q 011514          166 F---------------------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTR-PIIT---EETE-  213 (484)
Q Consensus       166 ~---------------------------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~-~~~~---~~~~-  213 (484)
                      .                           .+||+++.+.++..++ .++..+++||+|++...+++.+ +..+   ...+ 
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i-~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       173 IVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALL-ALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHH-HHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            2                           2699999877755544 4444567999998633222211 1111   0000 


Q ss_pred             c-cCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHH---HHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHH---
Q 011514          214 G-VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQA---AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD---  286 (484)
Q Consensus       214 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---  286 (484)
                      + .++.++.++.+++.++...++++.++...+++.....   ....+...+.+++...+.|.++++. |++..+.+.   
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~-G~~~~~~~~~~~  330 (502)
T TIGR00887       252 KIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI-GYSPPAATNNAY  330 (502)
T ss_pred             ccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH-cCCCCccchhHH
Confidence            0 0000000000000011112344433322122221211   2222333334445555678878654 876543211   


Q ss_pred             ---------HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhh
Q 011514          287 ---------LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITR  357 (484)
Q Consensus       287 ---------~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  357 (484)
                               ......++.+++. ++.+++.||+|||+.+..+..+..+++.++.........    +   ..        
T Consensus       331 ~~~~~~~~~~~~~~~~~~i~g~-~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~----~---~~--------  394 (502)
T TIGR00887       331 EELYKTAVGNLIIALAGTVPGY-WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLST----H---GF--------  394 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcch----h---HH--------
Confidence                     1222233344455 777999999999999888877776666555433211000    0   00        


Q ss_pred             hhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          358 KQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                                         +........++.....+..+.+..|.+|++.|+++.|+.+.++.++++++|.+.+.+.+.
T Consensus       395 -------------------~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~  454 (502)
T TIGR00887       395 -------------------LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQH  454 (502)
T ss_pred             -------------------HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcc
Confidence                               011111111222234556677789999999999999999999999999999999999885

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=8.8e-32  Score=271.93  Aligned_cols=380  Identities=13%  Similarity=0.111  Sum_probs=253.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ......++.+.+.++...+.+..|.+.+++..+-..+.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~   92 (479)
T PRK10077         13 ITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAA   92 (479)
T ss_pred             HHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            34455666777888888888888888776643334455777888999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhc---------cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhH
Q 011514           89 TLSIIPLAILAYR---------RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (484)
Q Consensus        89 ~~~~i~~~~~~~~---------~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  159 (484)
                      ++..++.+..++.         ++.+.++.+++.|+++|++. |...|...++++|++|+++|++++++.+....+|..+
T Consensus        93 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~-g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~  171 (479)
T PRK10077         93 VLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGV-GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV  171 (479)
T ss_pred             HHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhH-hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH
Confidence            9999998887763         23333567889999999765 7777899999999999999999999999999999998


Q ss_pred             HHHhhHh------------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCc
Q 011514          160 GTLAARF------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIP  227 (484)
Q Consensus       160 g~~l~~~------------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (484)
                      ++.++..            .+||++|++.++..++..+ ..+++||+|++..++++.++......+.....   +..   
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~-~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~---~~~---  244 (479)
T PRK10077        172 VYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM-LLYFVPETPRYLMSRGKQEQAEGILRKIMGNT---LAT---  244 (479)
T ss_pred             HHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh---hHH---
Confidence            8876542            4899999998876666544 45668998754222111111000000000000   000   


Q ss_pred             ccCCCCchHHHHHH-hhccchhH-----HHH----HHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHH
Q 011514          228 VCKKIPSIRDLICL-LRSSVTLS-----QAA----VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTI  297 (484)
Q Consensus       228 ~~~~~~~~~~~~~~-~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  297 (484)
                        +..++.++..+. ..+.+..+     ...    ...+...........+.|.+.++ .|.+..+........++...+
T Consensus       245 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~-~g~~~~~~~~~~~~~~~~~~i  321 (479)
T PRK10077        245 --QALQEIKHSLDHGRKTGGKLLMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKT-LGASTDIALLQTIIVGVINLT  321 (479)
T ss_pred             --HHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHH
Confidence              000001111000 00000100     001    01111111122233445665554 588877767776777777788


Q ss_pred             HHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccch
Q 011514          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQV  377 (484)
Q Consensus       298 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  377 (484)
                      +. ++.+++.||+|||+.+..+..+.+++.+.+........                     ...+             .
T Consensus       322 ~~-~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~---------------------~~~~-------------~  366 (479)
T PRK10077        322 FT-VLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA---------------------PGIV-------------A  366 (479)
T ss_pred             HH-HHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCc---------------------ccHH-------------H
Confidence            87 77799999999999999999888887776653321110                     0000             0


Q ss_pred             hhHHHHHHHhhhh-hhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          378 PYATTAFSVLVVF-ATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       378 ~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                      .....+.+.+.+. ..|..+.+++|.+|+++|+++.|+.+..+++++++++.+.+.+.
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~  424 (479)
T PRK10077        367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD  424 (479)
T ss_pred             HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            2222233333332 34677899999999999999999999999999999988877655

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=1.6e-31  Score=261.39  Aligned_cols=366  Identities=14%  Similarity=0.062  Sum_probs=264.1

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHH
Q 011514           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (484)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~   96 (484)
                      .+...+......+..|.+.+++        +.+..+.|++.+++.++..++.++.|+++||+|||+.+..+.++.+++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   75 (379)
T TIGR00881         4 YAAYYLVRKNFALAMPYLVEEI--------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNL   75 (379)
T ss_pred             hhHHHHhHHhhhhhhHHHHHHh--------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHH
Confidence            3455556666677777777665        44556779999999999999999999999999999999999999999999


Q ss_pred             HHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH-HhhHh----hhhHH
Q 011514           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT-LAARF----LSTTS  171 (484)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~-~l~~~----l~~~~  171 (484)
                      +++++++   ++.+++.|++.|++. +...+...+++.|+.|+++|++++++.+....+|..++| .++..    .+||+
T Consensus        76 ~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  151 (379)
T TIGR00881        76 FFGFSTS---LWVMAALWALNGIFQ-GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHW  151 (379)
T ss_pred             HHHHhhh---HHHHHHHHHHHHhhc-cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchh
Confidence            9999998   889999999999755 666788999999999999999999999999999999999 45443    48999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHH
Q 011514          172 AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQA  251 (484)
Q Consensus       172 ~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (484)
                      .|++.+++.++..+..++..||++++++.++++++.        +++.+++.  ++.+++.+..+...+...++|.++..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (379)
T TIGR00881       152 VFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP--------NEEPDGDA--EKKEEELTKKQIFLQYVLLNKVLWYI  221 (379)
T ss_pred             HHHHHHHHHHHHHHHHheeeCCCccccccCccccCc--------cccccccc--ccccccccchHHHHHHHHhcchHHHH
Confidence            999988777777777777777766543221110000        00000000  00011111222334446677888888


Q ss_pred             HHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hHHHH-HhH-HHHHHHHH
Q 011514          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLS-LGL-FAACINMF  328 (484)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~-~~~-~~~~~~~~  328 (484)
                      .+..++..........+.|.|+++.+|+++.+.+...+...++..++. ++.+++.||..+ |+... ... ....++..
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  300 (379)
T TIGR00881       222 SLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT-LLAGWLSDKLFNGRRGPLAVFFMALIIVSLL  300 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH-HHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence            888888887888888899999999889999999999999999998888 777999998633 33222 111 11222222


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      ..........                       .+             ........+.......+.......|..|+++|
T Consensus       301 ~~~~~~~~~~-----------------------~~-------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  344 (379)
T TIGR00881       301 VYWLNPAANP-----------------------LM-------------DLICLFALGFLVYGPQMLIGVIASELAPKKAA  344 (379)
T ss_pred             HHhcCcchhH-----------------------HH-------------HHHHHHHHHHHHhhhhHHHHHHHHHhcCcchh
Confidence            2222111111                       00             12223344444444555566788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      |++.|+.+...+++..++|.+.|.+.|.. +++.
T Consensus       345 g~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~  377 (379)
T TIGR00881       345 GTAAGFVGFFAYLGGILAGLPLGYLADGF-GWAG  377 (379)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhHHHHHHhh-cccc
Confidence            99999999999999999999999999986 5543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=2.1e-31  Score=268.95  Aligned_cols=414  Identities=14%  Similarity=0.088  Sum_probs=265.6

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHH
Q 011514           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (484)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~   95 (484)
                      +.++..++.....+.+|....++.-....+.+.+..+.|++.+++.++..++++++|+++||+|||+++..+.++..++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~  115 (481)
T TIGR00879        36 GGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGA  115 (481)
T ss_pred             HHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHH
Confidence            33445556667777777777665211112234556788999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh---Hh----hh
Q 011514           96 AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA---RF----LS  168 (484)
Q Consensus        96 ~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~---~~----l~  168 (484)
                      +++.+..+...++.+++.|+++|++. +...+...++++|++|+++|++++++.+....+|..+++.++   ..    .+
T Consensus       116 ~~~~~~~~~~~~~~~~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~  194 (481)
T TIGR00879       116 ILMGLAAFALSVEMLIVGRVLLGIGV-GIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLG  194 (481)
T ss_pred             HHHHHhccccchHHHHHHHHHHHhhh-hHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Confidence            99876655333568899999999755 677788999999999999999999999999999999999988   33    58


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCc-c----------CcccCCCCchHH
Q 011514          169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV-K----------IPVCKKIPSIRD  237 (484)
Q Consensus       169 ~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~~~~~~~~~  237 (484)
                      ||++|++.++..++ .+...+++||+++....+++.++......+..+..+++... +          .+.+...+..++
T Consensus       195 w~~~f~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (481)
T TIGR00879       195 WRIPLGLQLIPAGL-LFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGS  273 (481)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHH
Confidence            99999996654444 44455668887653211111111000000000000000000 0          000000111222


Q ss_pred             HHHHhh--ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          238 LICLLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       238 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      .++...  +++.++...+..+...........+.|.+.++ .|++..+.+.......++..++. ++.+++.||+++|+.
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~  351 (481)
T TIGR00879       274 LFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN-AGVSTDHAFLVSIIVGAVNFAFT-FVAIFLVDRFGRRPL  351 (481)
T ss_pred             HHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHH
Confidence            111111  12223333333333333334455566666655 59999888888888888888888 777999999999999


Q ss_pred             HHHhHHHHHHHHHHHhhc---cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHh-hhhh
Q 011514          316 LSLGLFAACINMFICSIS---WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVL-VVFA  391 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~  391 (484)
                      +..+..+.+++.+.+...   ..... +                +.....              ......+...+ ....
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~--------------~~~~~~~~~~~~~~~~  400 (481)
T TIGR00879       352 LLIGAAGMAICLFVLGILGASFVTGS-S----------------KSSGNV--------------AIVFILLFIAFFAMGW  400 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCc-c----------------cchhHH--------------HHHHHHHHHHHHHccc
Confidence            888877777776666521   11100 0                000000              01111122222 2223


Q ss_pred             hhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          392 TPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       392 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      .+....+..|..|+++|+++.|+.+...+++++++|.+.+.+.+.. ++...       |.+.+++.+++.+......++
T Consensus       401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~-~~~~~-------f~~~~~~~~~~~i~~~~~~~~  472 (481)
T TIGR00879       401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESI-GVGGV-------FIFFGGLNVLGLIFVYFFLPE  472 (481)
T ss_pred             cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cccce-------ehhHHHHHHHHHHHHheeccc
Confidence            4666677799999999999999999999999999999999999875 55443       355555555555555444444


Q ss_pred             C
Q 011514          472 P  472 (484)
Q Consensus       472 ~  472 (484)
                      +
T Consensus       473 ~  473 (481)
T TIGR00879       473 T  473 (481)
T ss_pred             C
Confidence            3

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=100.00  E-value=8e-30  Score=250.93  Aligned_cols=352  Identities=15%  Similarity=0.099  Sum_probs=264.3

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Q 011514            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR   80 (484)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr   80 (484)
                      |+.++.+|.+.......++..+......|.+|.+.+++        +.+..+.|++.+.+.++..++++++|+++||+||
T Consensus         1 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~gr   72 (394)
T PRK11652          1 MKRQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDL--------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGR   72 (394)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCC
Confidence            54455566677777777777788889999999998776        5556677999999999999999999999999999


Q ss_pred             hhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH
Q 011514           81 KAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        81 k~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig  160 (484)
                      |+.+..+.....++.+++.++++   ++.+++.|++.|++. +...+....+..|..++++|+++++..+.+..++..+|
T Consensus        73 r~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  148 (394)
T PRK11652         73 RPVILVGMSIFILGTLVALFAHS---LTVLIAASAIQGLGT-GVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLA  148 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHhhh-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988   888999999999755 56667788899999999999999999999999999999


Q ss_pred             HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      |.+++.    .+||++|++.++...+..+...+..||+++.++++                               ++.+
T Consensus       149 ~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~  197 (394)
T PRK11652        149 PLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPADARR-------------------------------TRVL  197 (394)
T ss_pred             HHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccccch-------------------------------hHHH
Confidence            988876    48999999988777666665566677754322111                               0123


Q ss_pred             HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +.++...++|.++...+..+........+....+.+.++.+|+++.+.+........+..++. .+.+++.||.+++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~-~~~~~l~~~~~~~~~~  276 (394)
T PRK11652        198 ASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTLMWQ  276 (394)
T ss_pred             HHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence            444456677777766655555555555566677888888889999998988877777777777 6668899988733322


Q ss_pred             HHhH-HHHHHHHHHHhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          317 SLGL-FAACINMFICSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       317 ~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      .... ....+........  .+.+.                                      ......+.+++.+...|
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~g~~~~~~  318 (394)
T PRK11652        277 SVICCLLAGLLMWIPGWFGVMNVWT--------------------------------------LLVPAALFFFGAGMLFP  318 (394)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHH--------------------------------------HHHHHHHHHHHHHHHHH
Confidence            2111 1111211111111  11222                                      13344567788888889


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      ...+...+..| +++|++.++.+....+|..+++.+.+.+.+
T Consensus       319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99998888887 688999999999999999999998887654

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=5.9e-31  Score=259.29  Aligned_cols=370  Identities=15%  Similarity=0.121  Sum_probs=260.7

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      ...++..+...+......+..|.+.+++        +.+..+.|++.+.+.++..++.++.|+++||+|||+.+..+.++
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   91 (398)
T TIGR00895        20 ILSFLIMLMDGYDLAAMGFAAPAISAEW--------GLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILL   91 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhhcc--------CCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            3334455556666667777788777655        44556779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----
Q 011514           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----  166 (484)
Q Consensus        91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----  166 (484)
                      ..++.++..+.++   ++.+++.|++.|++. +...+...+++.|+.|+++|++++++.+....+|..+||.+++.    
T Consensus        92 ~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~  167 (398)
T TIGR00895        92 FSVFTLLCALATN---VTQLLILRFLAGLGL-GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPV  167 (398)
T ss_pred             HHHHHHHHHHccc---hHHHHHHHHHHhccc-ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhc
Confidence            9999999999988   888899999999755 66678899999999999999999999999999999999988876    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccc-cCCCCCCCCccCcccCCCCchHHHHHHhhcc
Q 011514          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-VNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (484)
Q Consensus       167 l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (484)
                      .+|+..|++.+++..+..+.....+||+++...++++ ++.....++. ....++.++..++.+++.+..++..+.++++
T Consensus       168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (398)
T TIGR00895       168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRP-ETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQG  246 (398)
T ss_pred             ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCH-HHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcc
Confidence            4899999988767777777777778887653222111 1000000000 0000000000000001111122222223322


Q ss_pred             ---chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          246 ---VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       246 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                         +..+...+..++..........+.|.+ .+.+|+++.+.+...+...++..++. ++.+++.||+++|+........
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  324 (398)
T TIGR00895       247 KTARITVLLWLLYFMLLVGVYFLTNWLPKL-MVELGFSLSLAATGGALFNFGGVIGS-IIFGWLADRLGPRVTALLLLLG  324 (398)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcchHHHHHHHHHH
Confidence               233334444445555556667778844 45569999999999999999999998 7779999999988544433333


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ......+.....+.+.                                      .....++.+++.+...+...++..|.
T Consensus       325 ~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~  366 (398)
T TIGR00895       325 AVFAVLVGSTLFSPTL--------------------------------------LLLLGAIAGFFVNGGQSGLYALMALF  366 (398)
T ss_pred             HHHHHHHHHHhhCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3333222221223222                                      13445577888888889999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                      +|+++||++.|+.+....+|..+||.+.|.+
T Consensus       367 ~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       367 YPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            9999999999999999999999999999875

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=1.4e-29  Score=249.14  Aligned_cols=346  Identities=16%  Similarity=0.131  Sum_probs=255.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |.+.......+....+.....+.+|.+.++.        +.+..+.|+..+.+.++..+++++.|+++||+|||+.+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~   74 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAADL--------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPG   74 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHH
Confidence            4566677778888888889999999998876        44556779999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-  166 (484)
                      .++..++..++..+++   .+.+++.|+++|++. +...+...+++.|.+|+++|+++.++.+....+|..++|.+++. 
T Consensus        75 ~~~~~i~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l  150 (392)
T PRK10473         75 AALFIIASLLCSLAET---SSLFLAGRFLQGIGA-GCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLI  150 (392)
T ss_pred             HHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998   788899999999755 66667899999999999999999999999999999999988865 


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhh
Q 011514          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (484)
Q Consensus       167 ---l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (484)
                         .+||+.|++.+.+..+..++....+||++++++++                             +....++ .+...
T Consensus       151 ~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~-~~~~~  200 (392)
T PRK10473        151 MLKFPWQSLFYTMAAMGILVLLLSLFILKETRPARAPA-----------------------------ASSKPRE-NSESL  200 (392)
T ss_pred             HhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC-----------------------------ccchHHH-HHHHH
Confidence               48999999998888777777777777764332111                             0000111 11234


Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  323 (484)
                      +++.++...+...+.......+..+.|.+.++.+|+++.+.+...+..++..+++. +..+++.||+++|+.+..+..+.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~-~~~~~l~~r~g~~~~~~~~~~~~  279 (392)
T PRK10473        201 LNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVS-FSTPFALGIFKPRTLMLTSQVLF  279 (392)
T ss_pred             hCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            45555544444444333444455667888888889999999999999999999998 67799999999999998888877


Q ss_pred             HHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc
Q 011514          324 CINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV  403 (484)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  403 (484)
                      .++.+.+......+.                                      ......+.+.+.+...+..  ...+..
T Consensus       280 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~~~g~~~~~~~~--~~~~~~  319 (392)
T PRK10473        280 LAAGITLALSPSHAV--------------------------------------SLFGITLICAGFSVGFGVA--MSQALG  319 (392)
T ss_pred             HHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHHhHHH--HHHHhc
Confidence            777666655443322                                      0222223333333333322  223445


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 011514          404 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK  440 (484)
Q Consensus       404 p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~  440 (484)
                      |.++|+   |..+....+++.+++.+.+++.+.. ++
T Consensus       320 ~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~-g~  352 (392)
T PRK10473        320 PFSLRA---GVASSTLGIAQVCGSSLWIWLAAVL-GI  352 (392)
T ss_pred             cCcccc---cHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            554443   4445556778888888888888876 44

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=6.8e-30  Score=252.00  Aligned_cols=343  Identities=13%  Similarity=0.080  Sum_probs=252.3

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHH
Q 011514           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (484)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~   94 (484)
                      +..++..++..+..|.+|.+.+++        +.+....++..+++.++..++++++|+++||+|||+++..+.++.+++
T Consensus        23 ~~~~~~~~~~~~~~p~l~~i~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~   94 (413)
T PRK15403         23 LYDFAAYLTTDLIQPGIINVVRDF--------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLA   94 (413)
T ss_pred             HHHHHHHHHHHhhccCHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHH
Confidence            334555567789999999988776        444556688999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhH
Q 011514           95 LAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTT  170 (484)
Q Consensus        95 ~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~  170 (484)
                      .+++.++++   ++.++++|+++|++. +...+...+++.|++|+++|++++++......+|..+||.+++.    .+||
T Consensus        95 ~~~~~~a~~---~~~l~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~  170 (413)
T PRK15403         95 CAATLFTTS---MTQFLIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWK  170 (413)
T ss_pred             HHHHHHcCC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            999999999   889999999999865 55556778889999999999999999999999999999988875    4899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHH
Q 011514          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (484)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (484)
                      +.|++.+++.++..+..++.+||++++++++                            ...++..+..+...+||.++.
T Consensus       171 ~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~----------------------------~~~~~~~~~~~~ll~~~~~~~  222 (413)
T PRK15403        171 VLFAIIAVMGLIAFVGLLLAMPETVKRGAVP----------------------------FSAKSVLRDFRNVFRNRLFLT  222 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCccccCCC----------------------------CChHHHHHHHHHHHcCHHHHH
Confidence            9999999887777766666688865321110                            000111223444677888888


Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  330 (484)
                      ..+..++.......+..+.|.++++.+|+++.+.++.......+..++. .+.+++.+|..+++.......+..++..++
T Consensus       223 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~  301 (413)
T PRK15403        223 GAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVAN-AIVARFVKDPTEPRFIWRAVPIQLVGLALL  301 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence            8877777777777777788999999999999999998877777777777 444555444333333322222222232222


Q ss_pred             hh----ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          331 SI----SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       331 ~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      ..    ..+.+.                        +             ......+.+.+.+...|...+..-. -.+.
T Consensus       302 ~~~~~~~~~~~~------------------------~-------------~~~~~~l~~~G~~~~~p~~~~~al~-~~~~  343 (413)
T PRK15403        302 IVGNLLWPHVWL------------------------W-------------SVLGTSLYAFGIGLIFPTLFRFTLF-SNNL  343 (413)
T ss_pred             HHHHHHccccHH------------------------H-------------HHHHHHHHHHHHHHHhHHHHHHHhc-cCCC
Confidence            11    111111                        0             1334456677777777777753322 2223


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      .+|++.++.+.....+...++...|++.++
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~  373 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFN  373 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            479999999999999999999999998876

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.1e-29  Score=251.93  Aligned_cols=347  Identities=14%  Similarity=0.098  Sum_probs=259.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+..+....++..+......+.+|.+.+++        +.+..+.|+..+.+.+++.+++++.|+++||+|||+++..+.
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~--------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~   98 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGL   98 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            345556666777788888888999886665        555677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH---HhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           89 TLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        89 ~~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      .+.+++.+++   .++++   ++.++++|+++|++. +...+..++++.|+.|+++|.+.++..+....+|..+||.++.
T Consensus        99 ~~~~~~~~l~~~~~~a~~---~~~ll~~r~l~G~g~-g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~  174 (438)
T PRK10133         99 FLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ  174 (438)
T ss_pred             HHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHH-HHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999876   46778   889999999999755 7777889999999888777777899999999999999987754


Q ss_pred             h------------------------------hhhHHHHHHHH-HHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccc
Q 011514          166 F------------------------------LSTTSAFQAAT-IVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG  214 (484)
Q Consensus       166 ~------------------------------l~~~~~f~~~~-~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~  214 (484)
                      .                              .+||.+|+... +..++..+......||.+++++++             
T Consensus       175 ~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~~-------------  241 (438)
T PRK10133        175 SLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------------  241 (438)
T ss_pred             HHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccc-------------
Confidence            2                              24566665433 233233222233334321110000             


Q ss_pred             cCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHH-hhhcCcChhhHHHHHHHHHH
Q 011514          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQFADLMLIAGL  293 (484)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~  293 (484)
                                     ++..+..+..+.+.++|.++...+..++..........+.+.|+ ++.+|+++.+.+..+....+
T Consensus       242 ---------------~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        242 ---------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             ---------------ccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                           00001111122355677777776767777777777777888885 56789999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhh
Q 011514          294 AGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSI  373 (484)
Q Consensus       294 ~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~  373 (484)
                      +..+++ +..+++.||+++|+++..+..+..+.+.+..+.++.+.                                   
T Consensus       307 ~~~vG~-~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-----------------------------------  350 (438)
T PRK10133        307 CFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG-----------------------------------  350 (438)
T ss_pred             HHHHHH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH-----------------------------------
Confidence            999999 77799999999999988887776666555544433222                                   


Q ss_pred             ccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          374 FMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       374 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                          .....+.+++.+..+|..++...+..|+ +.+++.++.. ....++.++|.+.|.+.|..
T Consensus       351 ----~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~  408 (438)
T PRK10133        351 ----LIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAA  408 (438)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHh-HHhccchHHHHHHHHHHHhc
Confidence                3445578999999999999999999874 5678888776 45578899999999999875

>PRK15011 sugar efflux transporter B; Provisional

Probab=100.00  E-value=1.5e-29  Score=248.57  Aligned_cols=373  Identities=13%  Similarity=0.106  Sum_probs=253.9

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      +-+...+.+++..++..++.++..|.+|.+.++.+       +.+..+.|++.+...+...+.+++.|.++||+||||.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~-------~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~   84 (393)
T PRK15011         12 SFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEV-------HARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSL   84 (393)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHH
Confidence            33556677788899999999999999999886543       45556779988776664455555555559999999875


Q ss_pred             -HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccch--hHHHHHHHHHHHhHHhHHH
Q 011514           85 -TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        85 -~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~g~~ig~  161 (484)
                       ..+.+..+++..+.+++++   ++.+++.+.+.|... +...|...+++.|+.++++|  +...++.+...++|.++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~  160 (393)
T PRK15011         85 IVFCCLLGVLACTLFAWNRN---YFVLLFVGVFLSSFG-STANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP  160 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhh
Confidence             4566666677778888888   676665555555344 45667888889998876655  3456788889999999999


Q ss_pred             HhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH
Q 011514          162 LAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (484)
Q Consensus       162 ~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (484)
                      .+++.    .|||.+|+..++..++..+..++.+||++++++++.                ++           .+..+ 
T Consensus       161 ~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~-----------~~~~~-  212 (393)
T PRK15011        161 PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT----------------GT-----------LEAPR-  212 (393)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc----------------cc-----------ccccc-
Confidence            98875    499999999988887777777777888653322110                00           00000 


Q ss_pred             HHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH
Q 011514          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  317 (484)
                           .+++..+......+........+..+.|.|+++.+|+++.+.+.+.+......+++. ++.++++||+++|+.+.
T Consensus       213 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~-~~~G~l~dr~g~~~~~~  286 (393)
T PRK15011        213 -----RNRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTM-LIAGYFAKRLGKRFLMR  286 (393)
T ss_pred             -----cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHH
Confidence                 011222223333333334445566789999988889999998988877777676666 77799999999999877


Q ss_pred             HhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          318 LGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      .+.....+.+......++.+.                                      ......+.+++.+...+....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------~l~~~~l~~~~~g~~~~~~~~  328 (393)
T PRK15011        287 VAAVAGVCFYAGMLMAHSPAI--------------------------------------LLGLQLLNAIYIGILGGIGML  328 (393)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            666555444433333333222                                      022222333344444445556


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      ..+|..| +++|++.++.+...++|..++|.+.|.+.|.. +++.       .+.+.+++.+++.+..+..+
T Consensus       329 ~~~~~~p-~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~  391 (393)
T PRK15011        329 YFQDLMP-GQAGSATTLYTNTSRVGWIIAGSLAGIVAEIW-NYHA-------VFWFALVMIIATLFCLLRIK  391 (393)
T ss_pred             HHHHhCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHH-------HHHHHHHHHHHHHHHHHhhc
Confidence            6778887 56999999999999999999999999999975 5444       44555666666666555554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=5e-30  Score=257.35  Aligned_cols=377  Identities=13%  Similarity=0.076  Sum_probs=249.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      +.+...+...++..++.....|.+|.+.+++        +.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~  107 (476)
T PLN00028         36 RAFHLSWISFFTCFVSTFAAAPLLPIIRDNL--------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFL  107 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHH
Confidence            3444445556666666667778888887766        45556778889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH--
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR--  165 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~--  165 (484)
                      .++.+++.++++++++   ++.+++.|++.|++. +... ....+++|++|+++|++++++.....++|..+++.+..  
T Consensus       108 ~~~~~~~~~~~~~~~s---~~~l~~~r~l~G~~~-~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i  182 (476)
T PLN00028        108 LMLTAPAVFCMSLVSS---ATGFIAVRFFIGFSL-ATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLV  182 (476)
T ss_pred             HHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH-HhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998   788889999999765 4443 45678999999999999999998777666666543332  


Q ss_pred             -----------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCc
Q 011514          166 -----------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (484)
Q Consensus       166 -----------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (484)
                                 ..+||+.|++.+++.++..+..+++.++.|+.+.++          . +  +++         +.++.+
T Consensus       183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~----------~-~--~~~---------~~~~~~  240 (476)
T PLN00028        183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRE----------L-K--KSG---------TMPKDS  240 (476)
T ss_pred             HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhh----------H-H--hcC---------cccccc
Confidence                       137999999999888777666655443333211000          0 0  000         000011


Q ss_pred             hHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Q 011514          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (484)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  314 (484)
                      ..+.++...++++.+...+..++.........++.|.|+.+.+|++..+.+.+.+..+++..++. ++.|+++||+++|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~-~~~G~lsDr~~~r~  319 (476)
T PLN00028        241 FSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFAR-PAGGYLSDVAARRF  319 (476)
T ss_pred             HHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHhc
Confidence            22233335566777766666555555555667788999988889999999999999999999998 77799999997651


Q ss_pred             -------HHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHh
Q 011514          315 -------LLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVL  387 (484)
Q Consensus       315 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  387 (484)
                             .......+.++..+.+....+.+.                                      ......+.+++
T Consensus       320 ~~~~r~~~~~~~~~l~~i~~~~~~~~~~~~~--------------------------------------~~~~~~l~~~~  361 (476)
T PLN00028        320 GMRGRLWALWIVQTLGGVFCIWLGRANSLGA--------------------------------------AIVVMILFSIF  361 (476)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHhcccchHHH--------------------------------------HHHHHHHHHHH
Confidence                   222333333333333333333222                                      12223344444


Q ss_pred             hhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          388 VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       388 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      .+...+...++..+.. ++++|++.|+.+....+|.+++|.+.+  .+..+++..       .|.+.+++.+++.+..+.
T Consensus       362 ~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~~~~y~~-------~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        362 VQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFF--TGSSYSTET-------GISLMGVMIIACTLPVAF  431 (476)
T ss_pred             HHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHH--hcCCccHhh-------HHHHHHHHHHHHHHHHHh
Confidence            4444444555555554 478999999987777666666665543  111112222       456666666666555554


Q ss_pred             h
Q 011514          468 M  468 (484)
Q Consensus       468 ~  468 (484)
                      .
T Consensus       432 ~  432 (476)
T PLN00028        432 I  432 (476)
T ss_pred             e
Confidence            4

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-30  Score=240.64  Aligned_cols=380  Identities=14%  Similarity=0.098  Sum_probs=297.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      .+|++++-.....+......+..|+.+.+..        +.++|..+.+++.++..+...+..++.|.+.||+|.|+...
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~--------~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~   83 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKS--------DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI   83 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--------ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH
Confidence            4566666666666666666666666666643        44788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhH----HhHHH
Q 011514           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS----FVCGT  161 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g----~~ig~  161 (484)
                      .+.++..+..+..+++.+++.++.+++.+++.|+++ +.+ ....+++++++|+|++|.++|+.. ..|+|    ..++|
T Consensus        84 ~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~G-asF-av~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P  160 (417)
T COG2223          84 LSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAG-ASF-AVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAP  160 (417)
T ss_pred             HHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhccc-cee-hcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHH
Confidence            999999999999999988665679999999999754 444 689999999999999999999998 66666    55677


Q ss_pred             HhhHhhh---hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH-H
Q 011514          162 LAARFLS---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR-D  237 (484)
Q Consensus       162 ~l~~~l~---~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  237 (484)
                      .+....+   |+....+..+..++..+..++...|.|+.++..                               ++.+ .
T Consensus       161 ~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~-------------------------------~~~~~~  209 (417)
T COG2223         161 LVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASV-------------------------------KPQLPA  209 (417)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-------------------------------cccchh
Confidence            7777777   999988888888888888888888877653322                               0111 4


Q ss_pred             HHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH
Q 011514          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  317 (484)
                      .++...++|+.|.+.+.++....++.++..++|.|+++.+|.++.++|.......+.+.+.+ .++|+++||+|.+|...
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~R-p~GG~LsDR~Gg~rv~~  288 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALAR-PLGGWLSDRIGGRRVTL  288 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHH-hccchhhhhccchhHHH
Confidence            45557889999999999999999999999999999999999999999999999999999999 77899999999999998


Q ss_pred             HhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          318 LGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      .....++++........+....                  +...++             ........++..+..+...+.
T Consensus       289 ~~f~~~~~~~~~l~~~~~~~~~------------------~~~~~~-------------~~~~~l~l~~~~G~GnGsvfk  337 (417)
T COG2223         289 AVFVGMALAAALLSLFLTGFGH------------------GGSFVV-------------FVAVFLALFVFAGLGNGSVFK  337 (417)
T ss_pred             HHHHHHHHHHHHHHcccccccc------------------CcchHH-------------HHHHHHHHHHHhccCcchhee
Confidence            8888888887777665421110                  000000             022233444555555556666


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ++....| ++.|.+.|+....+.+|++.-|...|..++.++++..       .|.+...+.+++....+.
T Consensus       338 ~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~-------~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         338 MIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTG-------AFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             echHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHH
Confidence            6666666 5889999999999999999999999999999854443       455555566665555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=7.9e-30  Score=254.05  Aligned_cols=365  Identities=13%  Similarity=0.083  Sum_probs=246.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHhhhhccchh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~  125 (484)
                      +.+..+.|++.+++.++..++.++.|+++||+|||+.+..+.++.+++.++.++.++. ..++.+.+.|++.|++. +..
T Consensus        57 g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~-g~~  135 (438)
T TIGR00712        57 GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQ-GMG  135 (438)
T ss_pred             CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHh-hcc
Confidence            4555677999999999999999999999999999999999999999998887765321 12667788999999755 656


Q ss_pred             hHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (484)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~  200 (484)
                      .+.....+.|++|+++|++++++.+...++|..++|.+.+.     .+||..|++.+++.++..+..++.+||++++.+.
T Consensus       136 ~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~  215 (438)
T TIGR00712       136 WPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL  215 (438)
T ss_pred             hHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC
Confidence            67788999999999999999999999999998888765432     4899999999988888777777778887654321


Q ss_pred             CCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH-HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCc
Q 011514          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF  279 (484)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  279 (484)
                      ++.++.       +.+.. ++..+  +.+++ .+.++. .+...+++.++...+..++.........++.|.|+++..|+
T Consensus       216 ~~~~~~-------~~~~~-~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~  284 (438)
T TIGR00712       216 PPIEEY-------RNDYP-DDYNE--KAEQE-LTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHF  284 (438)
T ss_pred             CCchhc-------ccccc-ccccc--ccccc-cchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCC
Confidence            110000       00000 00000  00001 112222 22356778888887777777767777888999999998899


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH---HHHHHHhhcc--chhhHHHhhhhHHHHHHHHh
Q 011514          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC---INMFICSISW--SAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f  354 (484)
                      ++.+.+.......+...++. ++.+++.||+++++....+.....   ++...+...+  +.+.                
T Consensus       285 s~~~~~~~~~~~~~~~~ig~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------  347 (438)
T TIGR00712       285 ALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLV----------------  347 (438)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHH----------------
Confidence            99999999888888888888 777999999964332222222211   1112111111  1111                


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPL  433 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~-~~gp~i~g~l  433 (484)
                                            ........+.+.............|..|+++||++.|+.+...++++ .++|.+.|.+
T Consensus       348 ----------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l  405 (438)
T TIGR00712       348 ----------------------DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYT  405 (438)
T ss_pred             ----------------------HHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHH
Confidence                                  01112223332222222223456789999999999999999988874 6899999999


Q ss_pred             HHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          434 TALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      .|+. +++.       .+.+..+..+++.+......+
T Consensus       406 ~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~  434 (438)
T TIGR00712       406 VDFF-GWDG-------GFMVMIGGSILAVILLIVVMI  434 (438)
T ss_pred             HHhc-cchH-------HHHHHHHHHHHHHHHHHHHHh
Confidence            9986 5444       344444444444444444333

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=100.00  E-value=1.8e-29  Score=247.00  Aligned_cols=364  Identities=12%  Similarity=-0.008  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH-
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL-   88 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~-   88 (484)
                      ...+.+..+....+.++..|.+|.+.+|.        +.+..+.|++.+++.+...++++++|+++||+|||+...... 
T Consensus         6 ~~~l~~~~~~~~~~~~~~~p~l~~~l~~~--------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~   77 (382)
T TIGR00902         6 FRWLALGFFGYFCAYGIFLPFFPAWLKGI--------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLA   77 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            34567778888888999999999999876        556678899999999999999999999999999854332211 


Q ss_pred             HHHHHHH-HHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-
Q 011514           89 TLSIIPL-AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (484)
Q Consensus        89 ~~~~i~~-~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-  166 (484)
                      ....+.. ..+..+++   ++.+++.|.++|.+. +...|...++..|+  +++|+++.+......++|.++||.+++. 
T Consensus        78 ~~~~l~~~~~~~~~~~---~~~l~~~~~l~~~~~-~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l  151 (382)
T TIGR00902        78 LASAIFAAAFSAGAHN---AWLLFIAIGLFALFF-SAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGL  151 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH-ccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            1111122 23446677   888899999999765 44567888887665  4788999999999999999999988876 


Q ss_pred             ---hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhh
Q 011514          167 ---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (484)
Q Consensus       167 ---l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (484)
                         .|||..|++.... .+..+.. +.++|+++++++++                 +      +..++.++    .+...
T Consensus       152 ~~~~g~~~~f~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-----------------~------~~~~~~~~----~~~~l  202 (382)
T TIGR00902       152 IGMFDEQNILAILTAG-LAFMLIG-FLIKPTIPPKDAIP-----------------E------DESQGDSA----FIALL  202 (382)
T ss_pred             HHHcChhHHHHHHHHH-HHHHHHH-HHcCCCCCCCcccc-----------------c------cccccchh----HHHHH
Confidence               4899998887644 2222222 33444321111110                 0      00001112    22366


Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  323 (484)
                      |+|+++...+..++.......+.++.|.|+++ .|.++.+.|.+.....+..++.. ...+++.||+|+|+.+.++....
T Consensus       203 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~-~~~~~l~~r~g~~~~l~~~~~~~  280 (382)
T TIGR00902       203 KNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIF-AFSNKLFQNCSARDLLLISAIAC  280 (382)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHhHHHHhhCCHHHHHHHHHHHH
Confidence            77889888888888888888899999999987 69999999999888777777776 77799999999999999999999


Q ss_pred             HHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc
Q 011514          324 CINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV  403 (484)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  403 (484)
                      .+....+.+.++.+.                                      +.....+.++..+...+....++++. 
T Consensus       281 ~~~~~~~~~~~~~~~--------------------------------------~~~~q~l~g~~~~~~~~~~~~~i~~~-  321 (382)
T TIGR00902       281 VGRWAIIGAIEAFPL--------------------------------------IFLLQILHCGTFAVCHLAAMRYIAAQ-  321 (382)
T ss_pred             HHHHHHHHhHhhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence            999888887776665                                      24456688888899999999999988 


Q ss_pred             CCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          404 GPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       404 p~~~~g~~~g~~~-~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      |++++++.+++++ ....+|..++|.++|.++|+. +. .       .|...+++.+++.+...
T Consensus       322 ~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~-g~-~-------~~~~~~~~~~~~~~~~~  376 (382)
T TIGR00902       322 PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL-GA-G-------TFVFMAIIAAAAFFLIP  376 (382)
T ss_pred             CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cH-H-------HHHHHHHHHHHHHHHHH
Confidence            9999999999987 457799999999999999986 43 2       45666666665554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.98  E-value=9e-30  Score=254.23  Aligned_cols=359  Identities=10%  Similarity=0.056  Sum_probs=251.7

Q ss_pred             hHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhh
Q 011514           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF  106 (484)
Q Consensus        27 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~  106 (484)
                      ....+|.+.+++        +.+..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++   
T Consensus        38 ~~~~~~~i~~~~--------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---  106 (455)
T TIGR00892        38 VTVFFKELQQIF--------QATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSN---  106 (455)
T ss_pred             hhhhHHHHHHHh--------CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhh---
Confidence            344566666555        455566789999999999999999999999999999999999999999999999988   


Q ss_pred             HHHHHH-HHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHHH
Q 011514          107 FYAYYA-LRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSM  181 (484)
Q Consensus       107 ~~~l~~-~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~  181 (484)
                      ++.+++ .|++.|++. +...+...+++.|+++ ++|+++.++.+.+..+|..++|.+++.    .+||++|++.+++.+
T Consensus       107 ~~~l~~~~~~l~G~~~-~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~  184 (455)
T TIGR00892       107 VIELYLTAGFITGLGL-AFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL  184 (455)
T ss_pred             HHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            666654 578999755 5444566788889885 799999999999999999999887765    489999999998777


Q ss_pred             HHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH--HHHhhccchhHHHHHHHHHHh
Q 011514          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL--ICLLRSSVTLSQAAVVAFFSG  259 (484)
Q Consensus       182 i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  259 (484)
                      +..+..++..|+.+.++..+.+.+     +....+...+  +.  ..++..+..++.  ++ ..++|.++......++..
T Consensus       185 ~~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~  254 (455)
T TIGR00892       185 HCCVCGALMRPVGPSQRVSKSKSK-----EGLPPDGSTK--KL--SKKSTAEKINRFLDFS-LFTHRGFLVYLSGNVIMF  254 (455)
T ss_pred             HHHHHHHHhCCCCccccccccccc-----ccCCCCCccc--cc--cccchhhhhhhhcchH-HhcCchHHHHHHHHHHHH
Confidence            665554444443221111000000     0000000000  00  000000011111  12 456788887777777777


Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchHHHHH--hHHHHHHHHHHHhhccc
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLLSL--GLFAACINMFICSISWS  335 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~~~--~~~~~~~~~~~~~~~~~  335 (484)
                      ........++|.|.++ .|++..+.+.+.+..+++..+++ +..+++.||.  ++++....  +....+++.+.....++
T Consensus       255 ~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~  332 (455)
T TIGR00892       255 LGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFAR-PSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGD  332 (455)
T ss_pred             HHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            7777778889999887 59999999999999999998888 6668999873  33433332  23333333334434444


Q ss_pred             hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHH
Q 011514          336 AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI  415 (484)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  415 (484)
                      .+.                                      +.....+.|++.+...+...+.+.+.+|++++|++.|+.
T Consensus       333 ~~~--------------------------------------~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~  374 (455)
T TIGR00892       333 YTG--------------------------------------LVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLV  374 (455)
T ss_pred             HHH--------------------------------------HHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHH
Confidence            333                                      134455778888888888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCc
Q 011514          416 SGISSFANIVSPLIFSPLTALFLSKGAPFNFPG  448 (484)
Q Consensus       416 ~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~  448 (484)
                      +...++|+.+||.++|.+.+..+++...+...+
T Consensus       375 ~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~  407 (455)
T TIGR00892       375 TIVECCAVLIGPPLAGRLVDATKNYKYIFYASG  407 (455)
T ss_pred             HHHHHHHHHccccceeeeehhcCCcchHHHHhh
Confidence            999999999999999999998645655443333

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.98  E-value=4.4e-29  Score=241.43  Aligned_cols=341  Identities=22%  Similarity=0.319  Sum_probs=288.5

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHH
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (484)
                      .+....+...++.....+..|.+.++.        +.+..+.+++.+...++..++.++.|+++||+|||+.+..+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~   74 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDL--------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLF   74 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHH
Confidence            455677788888899999999998776        444557799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh----
Q 011514           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----  167 (484)
Q Consensus        92 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----  167 (484)
                      .++.+...+.++   ++.+++.|++.|++. +...+...+++.|+.|+|+|++.+++.+...++|..+||.+++.+    
T Consensus        75 ~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  150 (352)
T cd06174          75 ALGSLLLAFASS---LWLLLVGRFLLGLGG-GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL  150 (352)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHccc-ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999988   889999999999755 677789999999999999999999999999999999999888764    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccch
Q 011514          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (484)
                      +||+.+++.+.+.++..+...+ .+                                                     |.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~-~~-----------------------------------------------------~~  176 (352)
T cd06174         151 GWRWLFLILAILGLLLALLLLF-LL-----------------------------------------------------RL  176 (352)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HH-----------------------------------------------------HH
Confidence            6999999988777766655544 22                                                     33


Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH-HHHHhHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK-LLSLGLFAACIN  326 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~~~~~~  326 (484)
                      ++...+..++..........+.|.+.++.+|.++.+.+.......++..++. .+.+++.||+++|+ .+..+..+..++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~  255 (352)
T cd06174         177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA-LLGGLLSDRLGRRRLLLLIGLLLAALG  255 (352)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5556667777777888888899999999889999999999999999999998 77799999999999 888898888888


Q ss_pred             HHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          327 MFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .......++.+.                                      ......+.+++.+...+...++..|..|++
T Consensus       256 ~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  297 (352)
T cd06174         256 LLLLALAPSLAL--------------------------------------LLVALLLLGFGLGFAFPALLTLASELAPPE  297 (352)
T ss_pred             HHHHHHhccHHH--------------------------------------HHHHHHHHHHHHhccchhHHHHHHhhcCHH
Confidence            888877665444                                      245566788888999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHH
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS  465 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (484)
                      +|++.+|+.+...+++..++|.+.|.+.+.. +++.       .+.+.+++.+++.+..
T Consensus       298 ~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~-~~~~-------~~~~~~~~~~i~~i~~  348 (352)
T cd06174         298 ARGTASGLFNTFGSLGGALGPLLAGLLLDTG-GYGG-------VFLILAALALLAALLL  348 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-Ccch-------HHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999864 5544       4466666665555444

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.98  E-value=2.7e-29  Score=254.86  Aligned_cols=370  Identities=14%  Similarity=0.180  Sum_probs=255.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.+..+++..+++.++.....+.+|.+.+++        +.+..+.+++.+.+.++..++.++.|+++||+|||+.+..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~   90 (496)
T PRK03893         19 WKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF--------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVI   90 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            34566778888888999999999999888776        4555677999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++.+++.++++++++   ++.+++.|++.|++. +...+...+++.|.+|+++|+++++......++|..++|.+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~  166 (496)
T PRK03893         91 SIVLFSVGTLACGFAPG---YWTLFIARLVIGMGM-AGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL  166 (496)
T ss_pred             HHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988   888999999999755 56667889999999999999999999999999999999988876


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH-----
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD-----  237 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  237 (484)
                          .+||+.|++..+ ..+..+.....+||+++.++++++.++.           ++   ..+...+.......     
T Consensus       167 l~~~~~w~~~f~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~-----------~~---~~~~~~~~~~~~~~~~~~~  231 (496)
T PRK03893        167 VVPVWGWRALFFIGIL-PIIFALWLRKNLPEAEDWKEKHAGKAPV-----------RT---MVDILYRGEHRIINILLTL  231 (496)
T ss_pred             HhccCCHHHHHHHHHH-HHHHHHHHHHhCCCchhhhhhccccccc-----------hh---HHHHHhcchhHHHHHHHHH
Confidence                489999987543 3333333344456654322111000000           00   00000000000000     


Q ss_pred             --------HHH-------------------------Hhh--ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChh
Q 011514          238 --------LIC-------------------------LLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN  282 (484)
Q Consensus       238 --------~~~-------------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  282 (484)
                              ...                         ...  +.+.........+...........++|.|+++.+|++..
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~  311 (496)
T PRK03893        232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH  311 (496)
T ss_pred             HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence                    000                         000  000011111111111111223567899999877899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhH
Q 011514          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV  362 (484)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  362 (484)
                      +.+.+.+...++..++. ++.+++.||+++|+.+..+..+..+..+..........                        
T Consensus       312 ~~g~~~~~~~~~~~~g~-~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------  366 (496)
T PRK03893        312 TVANVLFFSGFGAAVGC-CVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANV------------------------  366 (496)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHH------------------------
Confidence            99999999999999988 77799999999999887776665555443333222111                        


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      +.            ......+.+.......+...+++++.+|+++||+++|+.+....+|..+||.+.|.+.|.. ++.
T Consensus       367 ~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~-g~~  432 (496)
T PRK03893        367 WV------------LGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL-DLG  432 (496)
T ss_pred             HH------------HHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC-ChH
Confidence            00            0111112222222334556678889999999999999999999999999999999999876 444

>TIGR00898 2A0119 cation transport protein

Probab=99.98  E-value=3.8e-30  Score=261.60  Aligned_cols=366  Identities=18%  Similarity=0.146  Sum_probs=254.3

Q ss_pred             CchhH---HHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhc
Q 011514           45 ECSLA---IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVC  121 (484)
Q Consensus        45 ~~~~~---~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~  121 (484)
                      |++++   ..+.|+..+++.++.++++++.|+++||+|||+++..+.++.+++.++.+++++   ++.+++.|++.|++.
T Consensus       118 e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~r~l~G~~~  194 (505)
T TIGR00898       118 EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN---YTVFLVFRLLVGMGI  194 (505)
T ss_pred             EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHhhc
Confidence            34555   678899999999999999999999999999999999999999999999999999   899999999999765


Q ss_pred             cchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (484)
Q Consensus       122 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~  200 (484)
                       +...+...+++.|++|+++|+++.++.+....+|.+++|.++..+ +||+.|++.++..++..+.. +++||+|++...
T Consensus       195 -~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~-~~~~esp~~l~~  272 (505)
T TIGR00898       195 -GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLS-WFVPESPRWLIS  272 (505)
T ss_pred             -cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HhcCCChHHHHH
Confidence             666688999999999999999999999999999999999988764 79999999987776665554 679999875433


Q ss_pred             CCCCCCccccccc-----ccCCCCCC-CC--ccC-cccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHH
Q 011514          201 DDLTRPIITEETE-----GVNQNESN-SP--VKI-PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (484)
Q Consensus       201 ~~~~~~~~~~~~~-----~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (484)
                      +++.++.....++     +....++. ..  .++ ...++..+.    +.++++|.++...+...+.++.........+.
T Consensus       273 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (505)
T TIGR00898       273 QGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSF----LDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVL  348 (505)
T ss_pred             CCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcH----HHHhCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3222221111000     00000000 00  000 000111123    33566677766665555444443333333333


Q ss_pred             HHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccch--hhHHHhhhhHHHH
Q 011514          272 FLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA--WVIKIFFNKVFKL  349 (484)
Q Consensus       272 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  349 (484)
                      +..+ ++.+...   .....++..+++. ++.+++.||+|||+.+..+..+.+++++.+.+.++.  +.           
T Consensus       349 ~~~~-~~~~~~~---~~~~~~~~~i~~~-~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~-----------  412 (505)
T TIGR00898       349 DLGN-LGGNIYL---DLFISGLVELPAK-LITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFL-----------  412 (505)
T ss_pred             cccc-cCCChHH---HHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHH-----------
Confidence            3333 3544332   2334455566666 667999999999999999888888887777665543  22           


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011514          350 LLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  429 (484)
Q Consensus       350 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i  429 (484)
                                                 ......+.+++.+...+..+.+..|.+|++.|+++.|+.+....+|++++|.+
T Consensus       413 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i  465 (505)
T TIGR00898       413 ---------------------------RTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFL  465 (505)
T ss_pred             ---------------------------HHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHH
Confidence                                       12233345556666778888999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          430 FSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       430 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+ +.+.  +...       .+.+.+++.+++.+...++++++
T Consensus       466 ~~-~~~~--~~~~-------~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       466 VY-LGEK--WLFL-------PLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HH-HHHH--HHhh-------HHHHHHHHHHHHHHHHHcCcCCC
Confidence            98 4433  2222       34555555555555555555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.98  E-value=1.4e-28  Score=241.76  Aligned_cols=348  Identities=15%  Similarity=0.113  Sum_probs=264.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+..++...++.++..++..|.+|.+.+++        +.+..+.|++.+.+.+++.+++++.|++.||+|||+.+..+.
T Consensus         4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~--------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~   75 (410)
T TIGR00885         4 PFALITSLFALWGFANDITNPMVPQFQQAF--------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGL   75 (410)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            456677778888888899999999997766        556677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-  167 (484)
                      ++.+++.+++..+...+.++.+++.|++.|++. +...+...+++.+..|+++|++..++.+...++|..+||.++..+ 
T Consensus        76 ~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~  154 (410)
T TIGR00885        76 FLYALGAFLFWPAAEIMNYTLFLVGLFILTAGL-GFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI  154 (410)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhH-HHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999988655421112788999999999755 777788999999999999999999999999999999999876543 


Q ss_pred             -----------------------------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCC
Q 011514          168 -----------------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQN  218 (484)
Q Consensus       168 -----------------------------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~  218 (484)
                                                   +||++|++.+.+.++..+... +.++++.+++++                 
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~-----------------  216 (410)
T TIGR00885       155 LSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDA-----------------  216 (410)
T ss_pred             hcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCcccc-----------------
Confidence                                         499999988876665544432 233221111000                 


Q ss_pred             CCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc-CcChhhHHHHHHHHHHHHHH
Q 011514          219 ESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAGLAGTI  297 (484)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~  297 (484)
                              +  +  .+.++..+...++|.++...+..+++...+....++++.|.++.. +.+....+...+.......+
T Consensus       217 --------~--~--~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v  284 (410)
T TIGR00885       217 --------K--Q--ISFSASLSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI  284 (410)
T ss_pred             --------c--c--ccchhhHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence                    0  0  011111223566788887788888888787778888999987642 33444444455555566778


Q ss_pred             HHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccch
Q 011514          298 SQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQV  377 (484)
Q Consensus       298 ~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  377 (484)
                      ++ ++++++.||+++|+.+.++..+..+.+++..+.++...                                       
T Consensus       285 GR-~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~~~~---------------------------------------  324 (410)
T TIGR00885       285 SR-FIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGGHVG---------------------------------------  324 (410)
T ss_pred             HH-HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCChHH---------------------------------------
Confidence            88 88899999999999988888888887777776655444                                       


Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .+...+.+++.+..+|...+...+..+++.+....++....  +|+.+.|++.|.+.|..
T Consensus       325 ~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~  382 (410)
T TIGR00885       325 LYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK  382 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence            45556778888888999999999999976654455555544  99999999999999964

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.98  E-value=3.9e-30  Score=258.60  Aligned_cols=363  Identities=12%  Similarity=0.058  Sum_probs=251.8

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHhhhhcc
Q 011514           45 ECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--RSISFFYAYYALRTLTAMVCE  122 (484)
Q Consensus        45 ~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~--~~~~~~~~l~~~r~l~G~~~~  122 (484)
                      |.+.+..+.|++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+++.++  .+   ++.+++.|+++|++. 
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~~~G~~~-  145 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG---IALVVFCRVIQGLAQ-  145 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC---chHHHHHHHHHHHhc-
Confidence            567888899999999999999999999999999999999999999999988887554  45   677899999999755 


Q ss_pred             chhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-----hhHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 011514          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (484)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~  197 (484)
                      +...|....+++|++|+++|++++++...+..+|..++|.+++.+     +||.+|++.+++.++..+..+...||+|+.
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~  225 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSI  225 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCccc
Confidence            777789999999999999999999999999999999999887652     899999999888777766666666666543


Q ss_pred             CCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc
Q 011514          198 DDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF  277 (484)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (484)
                      +++.++++      .+..++..+++   .+..+...++++    ..+++.++...+..++.......+.+++|.|+++.+
T Consensus       226 ~~~~~~~~------~~~i~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~  292 (465)
T TIGR00894       226 HPCISKFE------KKYINSSLQGQ---KGSTRQSLPIKA----IPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVL  292 (465)
T ss_pred             CCCCCHHH------HHHHHhhcccc---cCCCCCCCCHHH----HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            32211100      00000000000   000111123333    667788999998888888888888999999999999


Q ss_pred             CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH--------HHHhHHHH--HHHHHHHhhcc-chhhHHHhhhhH
Q 011514          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL--------LSLGLFAA--CINMFICSISW-SAWVIKIFFNKV  346 (484)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~--------~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~  346 (484)
                      |++..+.+...+...++..++. ++.|+++||+++|+.        +..+....  .+..+...... +...        
T Consensus       293 g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  363 (465)
T TIGR00894       293 RVSGKENGLLSSLPYLFAWLCS-IFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYL--------  363 (465)
T ss_pred             CcChHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHH--------
Confidence            9999999999999999888888 777999998754321        11111111  11111111111 1111        


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 011514          347 FKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  426 (484)
Q Consensus       347 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~g  426 (484)
                                                    ......+.+.+.+...+.......+..| +.+|.+.|+.+..+.++..++
T Consensus       364 ------------------------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~  412 (465)
T TIGR00894       364 ------------------------------TIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIA  412 (465)
T ss_pred             ------------------------------HHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHH
Confidence                                          0222223333344444445555556666 589999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          427 PLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       427 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      |.+.|.+.+.. +.. .|   ...|.+.++..+++.+......
T Consensus       413 p~l~g~~~~~~-~~~-~~---~~~f~~~~~~~~i~~i~~~~~~  450 (465)
T TIGR00894       413 STLAGNILSQD-SKN-VW---LIVFLIMAFVNILCVIFYLIFG  450 (465)
T ss_pred             HHhhheeeCCC-Cch-HH---HHHHHHHHHHHHHHHHHeeeee
Confidence            99999887642 111 01   1145556555666555544433

>PRK11043 putative transporter; Provisional

Probab=99.97  E-value=4e-28  Score=239.45  Aligned_cols=342  Identities=15%  Similarity=0.076  Sum_probs=253.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+..+.+..++..++.+++.|.+|.+.+++        +.+..+.|+..+++.++..++++++|+++||+|||+.+..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   78 (401)
T PRK11043          7 FLVYLAGLSMLGFLATDMYLPAFKAIQADL--------QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGL   78 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHH
Confidence            334444455666777889999999888776        555667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh--
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~--  166 (484)
                      .+..++.+++.++++   ++.+++.|+++|++. +...+...+++.|++|++++++..+.......+|..++|.+++.  
T Consensus        79 ~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~  154 (401)
T PRK11043         79 SLFALGSLGMLWVES---AAQLLVLRFVQAVGV-CSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL  154 (401)
T ss_pred             HHHHHHHHHHHHhcC---HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   888999999999755 55556778899999999999999999888888888888888765  


Q ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhc
Q 011514          167 --LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS  244 (484)
Q Consensus       167 --l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (484)
                        .+||+.|++.+++.++..+..++ ++|++++++++                                +.++..+...+
T Consensus       155 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------------------------~~~~~~~~~~~  201 (401)
T PRK11043        155 NHFGWQAIFATLFAITLLLILPTLR-LKPSKKARKQS--------------------------------QDALTFKQLLK  201 (401)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHHH-cCCCCCccccc--------------------------------hHHHHHHHHHc
Confidence              48999999888777766555443 55443211110                                00112233455


Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.++...+...+.......+..+.|.+.++ +|+++.+.+.......++..++. +..+++.||+++|+..........
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~g~-~~~~~l~~r~~~~~~~~~~~~~~~  279 (401)
T PRK11043        202 SKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLVGG-YGCRAALQKWGGEQLLPWLLVLFA  279 (401)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHHHHHHHH
Confidence            6666655544444444555666778888876 59999999988877777777777 777899999998887655554444


Q ss_pred             HHHHHH---hhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514          325 INMFIC---SIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV  399 (484)
Q Consensus       325 ~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  399 (484)
                      ++...+   ...  +..+.                                      ......+.+.+.+...+...+..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~  321 (401)
T PRK11043        280 VSVIAIWLASLLSHPSLVP--------------------------------------LLIPFCVMAAANGAIYPIVVAQA  321 (401)
T ss_pred             HHHHHHHHHHHhccCcHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            433322   111  11111                                      12334456777777888887777


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          400 SKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       400 ~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      .+..| +++|++.|+.+..+..+...++.+.|.+.+.
T Consensus       322 ~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        322 LRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             hhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            77776 6899999999999999999999999988763

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.97  E-value=1.2e-28  Score=241.24  Aligned_cols=331  Identities=13%  Similarity=0.140  Sum_probs=244.4

Q ss_pred             HHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHh
Q 011514           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (484)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~  100 (484)
                      .++.++..|.+|.+.+++        +.+..+.|++.+++.++..++.+++|+++||+|||+.+..+.++.+++..++.+
T Consensus         4 ~~~~~~~~p~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~   75 (377)
T PRK11102          4 PLAIDMYLPALPVIAADF--------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL   75 (377)
T ss_pred             chHHHHHhccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence            356678889999999876        555667899999999999999999999999999999999999999999999999


Q ss_pred             ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHH
Q 011514          101 RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAA  176 (484)
Q Consensus       101 ~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~  176 (484)
                      .++   ++.+++.|++.|++. +...+...+++.|+.|+|+|++++++.+....+|..++|.+++.    .+||+.|++.
T Consensus        76 ~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~  151 (377)
T PRK11102         76 AQT---IDQLIYMRFLHGLAA-AAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL  151 (377)
T ss_pred             Hcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            998   788899999999755 66667899999999999999999999999999999999988765    4899999998


Q ss_pred             HHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHH
Q 011514          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (484)
Q Consensus       177 ~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (484)
                      +.+..+..+...+.+||++++++++                           +.+.++..+..+...++|..+...+..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (377)
T PRK11102        152 ALAAILAAALVFFFIPETLPKERRQ---------------------------PFHLRTTIRNFASLFRHKRVLGYMLASG  204 (377)
T ss_pred             HHHHHHHHHHHHHhCCccCcccccC---------------------------CCChHHHHHHHHHHHcChHHHHHHHHHH
Confidence            8787777777767777764322111                           0000011122333556677666666655


Q ss_pred             HHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhh---c
Q 011514          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI---S  333 (484)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~---~  333 (484)
                      +.......+..+.|.+..+.+|+++.+.+.......++..++. +..+++.||+|+|+.+..+..+..+..+.+..   .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~  283 (377)
T PRK11102        205 FSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMT-IINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL  283 (377)
T ss_pred             HHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555566667778888789999999999999999988888 77799999999999888777654433222211   1


Q ss_pred             c-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHH
Q 011514          334 W-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  412 (484)
Q Consensus       334 ~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  412 (484)
                      + ..+.                                      ......+...+.+...+.......|..| +++|++.
T Consensus       284 ~~~~~~--------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~  324 (377)
T PRK11102        284 DLGFWA--------------------------------------LVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTAS  324 (377)
T ss_pred             hhhHHH--------------------------------------HHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHH
Confidence            1 1111                                      0222223333444445555566777766 8899999


Q ss_pred             HHHHHHHH-HHHHHHHHHH
Q 011514          413 GCISGISS-FANIVSPLIF  430 (484)
Q Consensus       413 g~~~~~~~-lg~~~gp~i~  430 (484)
                      +..+.... ++..+++.+.
T Consensus       325 ~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        325 SLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            98776643 4555555443

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.97  E-value=1.9e-30  Score=235.34  Aligned_cols=360  Identities=17%  Similarity=0.231  Sum_probs=254.6

Q ss_pred             HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch
Q 011514           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (484)
Q Consensus        25 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~  104 (484)
                      +-..|.....++++.....++.+.+....|++.+.+.+.+.++++.+|.++||+|||+++.++++..+++..+.+.++| 
T Consensus        42 ~~L~~~~~~~V~~F~~a~~~~~~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~-  120 (451)
T KOG2615|consen   42 SSLYPFVVFMVRDFNIAIGEPDGASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN-  120 (451)
T ss_pred             cchhHHHHHhhHHHHHhhCCcccccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH-
Confidence            4444455555555422122333456778999999999999999999999999999999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhhhh------HHHHHH---
Q 011514          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST------TSAFQA---  175 (484)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~------~~~f~~---  175 (484)
                        +..+.++|++.|++- |... ...++++|+.++|+|+.+++.++..+++|.++||++|+++..      +.+|..   
T Consensus       121 --F~afv~aR~l~Gi~k-gnl~-v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~  196 (451)
T KOG2615|consen  121 --FAAFVLARFLGGIFK-GNLS-VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCL  196 (451)
T ss_pred             --HHHHHHHHHhhhhcc-CchH-HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHH
Confidence              866677799999865 7774 799999999999999999999999999999999999998644      233333   


Q ss_pred             -HHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccc-------h
Q 011514          176 -ATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV-------T  247 (484)
Q Consensus       176 -~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~  247 (484)
                       ..++...-.....+++||+-+.+++.++.++..+..+++   .+....          +...... ..+|+       .
T Consensus       197 ~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~~~~---~~~~~~----------~~~~~v~-~lrn~p~~~~i~~  262 (451)
T KOG2615|consen  197 LVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAADDR---LALLKF----------ARIFKVA-ALRNPPLLDFISV  262 (451)
T ss_pred             HHHHHHHHHHHHHHHhCCccccchhhcccccchhhhhhhh---hhhcch----------hhhhhhh-hhcCccccchHHH
Confidence             222222223334456999976655441111111111100   000000          0000000 11111       1


Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chHHHHHhHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACI  325 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~  325 (484)
                      +....+..+.+...+..+....+.+.++.+|+++.+.|.+++..++.+.+.+..+ .+..+|.+  .+-.+..++.++.-
T Consensus       263 ~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~-~~~l~~~~~~~~a~l~~~l~~~vP  341 (451)
T KOG2615|consen  263 LRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLAL-VPILPRYKGNIKAVLLFSLLLIVP  341 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhc-cccccccccchhhHHHHHHHHHHH
Confidence            2233445555555555666666666678899999999999999999999999555 44455544  44555666666666


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      .++++........                                      +.....+..+..+...+.....+.+..|+
T Consensus       342 ~~llls~~~~~~~--------------------------------------l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~  383 (451)
T KOG2615|consen  342 AFLLLSLARTPVV--------------------------------------LYLGSTLKSFSTASVVTCLTSLVHKYGPQ  383 (451)
T ss_pred             HHHHHhccccchh--------------------------------------hhHHHHHHHHHHHHhhHHHHHHHHhcCCc
Confidence            6666766666554                                      24455577888888899999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ++||++.|+..+.+.++.++||.+.|.+..+..+.+.
T Consensus       384 ~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~  420 (451)
T KOG2615|consen  384 SQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQP  420 (451)
T ss_pred             ccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCc
Confidence            9999999999999999999999999999988644444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.97  E-value=5.6e-28  Score=243.00  Aligned_cols=378  Identities=12%  Similarity=0.067  Sum_probs=263.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----Cchh
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA   82 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~   82 (484)
                      |+...++...+..++......+.+|.+.++.        +.+..+.|.. +...... +..+++|+++||+     ||||
T Consensus        12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~--------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr   81 (491)
T PRK11010         12 PNSAILLILGFASGLPLALTSGTLQAWMTVE--------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRR   81 (491)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCch
Confidence            3455666677778888889999999998775        3344455664 3334443 5789999999999     9998


Q ss_pred             H-hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH
Q 011514           83 M-LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        83 ~-l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      . +..+.+..+++...+++.+..+.++.+.+.+++.|++. +...+...+++.|++|+|+|+++.++...+..+|.++++
T Consensus        82 ~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~-a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~  160 (491)
T PRK11010         82 GWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCS-ASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSG  160 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHH
Confidence            6 66777888888887777644333778888999999765 667778999999999999999999999999999999998


Q ss_pred             HhhHh-----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          162 LAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       162 ~l~~~-----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      .++..     .|||.+|++.+++.++..+..+ ..||++++++++                  +      +   ..++..
T Consensus       161 ~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~------------------~------~---~~~~~~  212 (491)
T PRK11010        161 GLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVP------------------K------T---LEQAVV  212 (491)
T ss_pred             HHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccc------------------c------c---hhhhHH
Confidence            66543     4899999998877766654444 477754321110                  0      0   000111


Q ss_pred             HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHH-HHHHHHHHHHHHHhhhhhcchHH
Q 011514          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAG-LAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      +.++.+.+++..+...+..++..........+.+.|+.+.+|++..+.+......+ ++.+++. ++.+++.||+++|+.
T Consensus       213 ~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~-ll~G~L~dr~g~~~~  291 (491)
T PRK11010        213 APLRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGA-LYGGILMQRLSLFRA  291 (491)
T ss_pred             HHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHH
Confidence            12233445566666665556666666666777888887778999999999875444 5666776 888999999999887


Q ss_pred             HHHhHHHHHHHHHHH---hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhh
Q 011514          316 LSLGLFAACINMFIC---SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFAT  392 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  392 (484)
                      +..+..+.++..+.+   ....+...          .                           +.....+..+..+...
T Consensus       292 l~i~~~l~~l~~l~~~~l~~~~~~~~----------~---------------------------l~~~~~l~~~~~g~~~  334 (491)
T PRK11010        292 LMIFGILQGVSNAGYWLLSITDKNLY----------S---------------------------MGAAVFFENLCGGMGT  334 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccHH----------H---------------------------HHHHHHHHHHHHHHHH
Confidence            766555444433222   22211111          0                           0122223334444455


Q ss_pred             hHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          393 PSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       393 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      +...+...+..+++.+++.+|+.+....+|..+++.+.|.+.|.. ++..       .|.+.+++.+.+.+.....++
T Consensus       335 ~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~-G~~~-------~f~~~~~~~l~~l~~~~~~~~  404 (491)
T PRK11010        335 AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH-GWPT-------FYLFSVAAAVPGLLLLLVCRQ  404 (491)
T ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence            666788889999999999999999999999999999999999976 5443       456666667766666655543

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=1e-28  Score=245.05  Aligned_cols=380  Identities=11%  Similarity=0.032  Sum_probs=253.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++.++.+....++..++.+...|.+|.+.++..       +.+..+.|++.+++.++..++++++|+++||+|||+++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~   81 (420)
T PRK09528          9 NPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDIN-------GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLW   81 (420)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence            566777778888888988999999999987743       5666788999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHH---hccch--hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH
Q 011514           87 PLTLSIIPLAILA---YRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        87 ~~~~~~i~~~~~~---~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      +..+.++......   .++..  .......+.++..|... ....+....+..+.  ++++++.++......++|..+||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~  158 (420)
T PRK09528         82 IISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGF-LAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCA  158 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHH
Confidence            7666554433221   11110  00112233344444222 22222333333222  34667788888888999999999


Q ss_pred             HhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH
Q 011514          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (484)
Q Consensus       162 ~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (484)
                      .+++.+   +|+.+|++.+++.++..+..++..||++++.+.+ +             + +++       +++..+.++.
T Consensus       159 ~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~-~~~-------~~~~~~~~~~  216 (420)
T PRK09528        159 FIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA-N-------------A-LGA-------NASAVSLKDA  216 (420)
T ss_pred             HHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc-c-------------c-hhc-------ccccccHHHH
Confidence            998875   7899999888777666655555444433221110 0             0 000       0011122332


Q ss_pred             HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      . ...++|.++...+..+.............|.|+.+.+   +.+..+.+.+.+...+...++. +..+++.||+++|+.
T Consensus       217 ~-~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  294 (420)
T PRK09528        217 L-ALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIM-FFAPFIINRIGAKNA  294 (420)
T ss_pred             H-HHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcchh
Confidence            2 2455676665555444444444455556777766543   4566677888888888888887 777999999999999


Q ss_pred             HHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHH
Q 011514          316 LSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSF  395 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  395 (484)
                      +..+..+..++..+..+.++.+.                                      +.....+.+.+.+...+..
T Consensus       295 ~~~~~~l~~~~~~l~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~  336 (420)
T PRK09528        295 LLLAGTIMAVRIIGSGFATGPLE--------------------------------------VSILKLLHAFEVPFLLVGV  336 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccHHH--------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence            98888888888777777666555                                      1333335566666666677


Q ss_pred             HHHHhcccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          396 RSIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       396 ~~~~~~~~p~~~~g~~~g~-~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      ..++.+..|++.+++..+. .++...+|..++|.+.|++.|.. +++.       .|.+.+++.++......
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~-G~~~-------~f~~~~~~~~i~~~~~~  400 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI-GFQG-------TYLILGGIVLLFTLISV  400 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh-CchH-------HHHHHHHHHHHHHHHHH
Confidence            7888899999999988766 67788999999999999999986 5554       44555555444443333

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.97  E-value=1e-27  Score=233.44  Aligned_cols=371  Identities=13%  Similarity=0.087  Sum_probs=262.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|+++...++.++......+..|..+.+.++       +.+++..+.+++.+++.++..++.++.|.+.||+|.|+++..
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~-------~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~  105 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKI-------GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVF  105 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence            4667777777777777777888877776542       236777788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-----cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH-
Q 011514           87 PLTLSIIPLAILAYR-----RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCG-  160 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~-----~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig-  160 (484)
                      +.++.++..+..+++     ++   ++.+++.|++.|++  +...+.....+++++|+++||+++|+.....++|..++ 
T Consensus       106 ~~ll~~i~~~~~~~a~~~~~~s---~~~lli~r~l~Gig--g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~  180 (462)
T PRK15034        106 STAILIIPCVWLGIAVQNPNTP---FGIFIVIALLCGFA--GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQ  180 (462)
T ss_pred             HHHHHHHHHHHHHHHHcccCCC---HHHHHHHHHHHHHH--HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHH
Confidence            999999999999986     67   89999999999985  44557899999999999999999999976666666544 


Q ss_pred             ---HHhhH------------------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCC
Q 011514          161 ---TLAAR------------------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE  219 (484)
Q Consensus       161 ---~~l~~------------------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (484)
                         |.+.+                  ..+||.++++..++.++..++.++..+|.++.  +                   
T Consensus       181 ~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~--~-------------------  239 (462)
T PRK15034        181 LVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS--R-------------------  239 (462)
T ss_pred             HHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc--c-------------------
Confidence               43221                  23477777777767766666666655543321  1                   


Q ss_pred             CCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHH
Q 011514          220 SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQ  299 (484)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  299 (484)
                                   .+.++..+ ..|+|+.|...+.+++....+.++..++|.|.++.+  +.........+..+...+.+
T Consensus       240 -------------~~~~~~~~-vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~~~~l~~~~l~~l~~~l~r  303 (462)
T PRK15034        240 -------------ASIADQLP-VLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PDVNILRLAFFGPFIGAIAR  303 (462)
T ss_pred             -------------cCHHHHHH-HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHH
Confidence                         12344333 667789999999998888888888889999998865  33332333344456677777


Q ss_pred             HHHHHHhhhhhcchHHHHHhHHHHHHHHHHHh-hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchh
Q 011514          300 LLFMPLLAPILGEAKLLSLGLFAACINMFICS-ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVP  378 (484)
Q Consensus       300 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  378 (484)
                       .++|+++||+|+++++.++.....+...... ..+....                     ...+.            ..
T Consensus       304 -plgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~---------------------~~~~~------------~~  349 (462)
T PRK15034        304 -SVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGS---------------------GNFIA------------FY  349 (462)
T ss_pred             -HhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccc---------------------cHHHH------------HH
Confidence             6779999999999999888876666553322 2221100                     00000            02


Q ss_pred             hHHHHHHHhhhhhhhHHHHHHhcccCC---------------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          379 YATTAFSVLVVFATPSFRSIVSKQVGP---------------------NEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       379 ~~~~~~g~~~~~~~~~~~~~~~~~~p~---------------------~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .......++.+..+.....++.+.+|+                     ++.|.+.|+....+.+|+++-|.+.|...+.+
T Consensus       350 ~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~  429 (462)
T PRK15034        350 AVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT  429 (462)
T ss_pred             HHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence            222233344444455555555555553                     16788999999999999999999999999987


Q ss_pred             hcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          438 LSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      +++..       .+....+..+++..+.+.
T Consensus       430 g~~~~-------~~~~~~~~~~~~~~~~w~  452 (462)
T PRK15034        430 GSPVG-------AMKVFLIFYIVCVLLTWL  452 (462)
T ss_pred             CCcHH-------HHHHHHHHHHHHHHHHHH
Confidence            55554       345555556665555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.97  E-value=1.3e-28  Score=242.13  Aligned_cols=350  Identities=13%  Similarity=0.048  Sum_probs=245.2

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHH
Q 011514           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (484)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~   97 (484)
                      +.+.++.....+..+.+.++... +.++.+.+........+...++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~   81 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFP-PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLL   81 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666532 12233332222223344455666788999999999999999999999999999999


Q ss_pred             HHhccchhh-----HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh------
Q 011514           98 LAYRRSISF-----FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------  166 (484)
Q Consensus        98 ~~~~~~~~~-----~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~------  166 (484)
                      +++++++..     .+.+++.|+++|++. +...+...+++.|+.|+++|++..+..+.+..+|.++++.++..      
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~r~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~  160 (394)
T TIGR00883        82 IGLLPSYATIGIWAPILLLLARLIQGFSL-GGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG  160 (394)
T ss_pred             HhhCCChhhhHHHHHHHHHHHHHHHHhhc-cccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999988421     135789999999755 66667899999999999999999999999999999999876532      


Q ss_pred             ------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH
Q 011514          167 ------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (484)
Q Consensus       167 ------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (484)
                            .+||++|++.+++.++.. ......||+++.+++++                        +.++...+.++   
T Consensus       161 ~~~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~---  212 (394)
T TIGR00883       161 DDALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQE------------------------KHKKKRGPIRE---  212 (394)
T ss_pred             HHHhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHh------------------------ccccccCCHHH---
Confidence                  479999988776554443 33344566543322110                        00011122333   


Q ss_pred             Hhhccc--hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Q 011514          241 LLRSSV--TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (484)
Q Consensus       241 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  318 (484)
                       ..+++  .++......++..........+.|.|.++.+|.++.+.+.......+...++. ++.+++.||+|+|+.+..
T Consensus       213 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~~~~  290 (394)
T TIGR00883       213 -TLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITI-PLSGALSDRIGRRPVLII  290 (394)
T ss_pred             -HHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHH
Confidence             22223  35555666666666667778889999988889999999999888888888888 677999999999997765


Q ss_pred             hHHHHHHHH-HH-Hhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhH
Q 011514          319 GLFAACINM-FI-CSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPS  394 (484)
Q Consensus       319 ~~~~~~~~~-~~-~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  394 (484)
                      ...+..+.. .. ....  .+.+.                                      ......+.+++.+...+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~  332 (394)
T TIGR00883       291 FTVLAALLAVPLLMALLDSGSFTL--------------------------------------FFFLVLGLALIGGMYTGP  332 (394)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHH--------------------------------------HHHHHHHHHHHHHHHhhh
Confidence            444333222 22 1121  12222                                      133344666777778888


Q ss_pred             HHHHHhcccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Q 011514          395 FRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       395 ~~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .++.+.|.+|+++|+++.|+. +....+|..++|.+.|.+.|+.
T Consensus       333 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~  376 (394)
T TIGR00883       333 MGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT  376 (394)
T ss_pred             HHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc
Confidence            899999999999999999985 4556688889999999999986

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=4.1e-28  Score=239.42  Aligned_cols=379  Identities=12%  Similarity=0.107  Sum_probs=260.9

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc-hhHhHHHHHH
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAMLTLPLTL   90 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~l~~~~~~   90 (484)
                      -+....|+...+.++..|.++.+.++..       +.+..+.|++.+++.++..++++++|.++||+|| |+++.++.+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~-------g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~   78 (418)
T TIGR00889         6 KLKFMSFLQWFIWGSWLVTLGSYMSKTL-------HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFA   78 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            3566778888899999999999887643       5666788999999999999999999999999965 7788888888


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHH----h----hcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV----A----DNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i----~----~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      ..+...+..+.++   ++.+++.|++.|++. +...+...+..    .    |..+...|.|..|      .+|..+||.
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~l~~~~~-~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~  148 (418)
T TIGR00889        79 GALLLFFAAQVTT---PAGMFPVLLANSLAY-MPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMW  148 (418)
T ss_pred             HHHHHHHHHHhcC---HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHH
Confidence            8888888888888   788888999988754 44445554443    2    3333345555555      367888888


Q ss_pred             hhHhhhh---HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          163 AARFLST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       163 l~~~l~~---~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +++.++.   +.+|++.+++.++..++ .+.+||+++.+++++                       .+ .++  ..+...
T Consensus       149 l~g~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~-----------------------~~-~~~--~~~~~~  201 (418)
T TIGR00889       149 AVSLLDIELSNIQLYITAGSSALLGVF-ALTLPDIPVAKSTAK-----------------------MS-IKV--MLGLDA  201 (418)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHHH-HhcCCCCCCCccccc-----------------------cC-HHH--HhhhhH
Confidence            8876543   23577777666665544 456787643221110                       00 000  000112


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcCh--------hhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNK--------NQFADLMLIAGLAGTISQLLFMPLLAPILG  311 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g  311 (484)
                      +...|+|.++...+..++..........+.+.|.++. |.++        .+.+...+...+..+++. +..+++.||+|
T Consensus       202 ~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~-~~~g~l~dr~g  279 (418)
T TIGR00889       202 FILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFI-LTIPFFLKRFG  279 (418)
T ss_pred             HHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHhC
Confidence            2356778877777777776666666667778888764 5443        566888888888888888 77799999999


Q ss_pred             chHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhh
Q 011514          312 EAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFA  391 (484)
Q Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  391 (484)
                      +|+.+..+.++..++...+......+.                      ..+            .+.....+.+++.+..
T Consensus       280 ~r~~l~~~~~~~~v~~~l~~~~~~~~~----------------------~~~------------~l~l~~~l~g~~~~~~  325 (418)
T TIGR00889       280 IKKVMLLSLVAWALRFGFFAYGDPEYF----------------------GYA------------LLFLSMIVYGCAFDFF  325 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcCcchh----------------------hHH------------HHHHHHHHHHHHHHHH
Confidence            999999999888887766655322110                      000            0133455677777777


Q ss_pred             hhHHHHHHhcccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH-Hhc
Q 011514          392 TPSFRSIVSKQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL-MMS  469 (484)
Q Consensus       392 ~~~~~~~~~~~~p~~~~g~~~g~~~-~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  469 (484)
                      .+....++.|..|+++||+++|+.+ ....+|..+||.++|.++|+.++... +.+. ..|.+.+++.+++.+... ..+
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~-~~~~-~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGT-FDWQ-TMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccC-CchH-HHHHHHHHHHHHHHHHHHHHhC
Confidence            8888889999999999999999997 56889999999999999998633110 0011 144555555444444444 344


Q ss_pred             cCC
Q 011514          470 HTP  472 (484)
Q Consensus       470 ~~~  472 (484)
                      ++.
T Consensus       404 ~~~  406 (418)
T TIGR00889       404 YSH  406 (418)
T ss_pred             Ccc
Confidence            433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.97  E-value=2.1e-28  Score=271.73  Aligned_cols=378  Identities=11%  Similarity=0.058  Sum_probs=263.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      .+.+..++...++..++.++....++.+....+  ..+.........++..+++.++++++++++|.++||+|||+++..
T Consensus        10 ~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         10 SRRFAPLFWTQFFGAFNDNFLKNALVILILYGL--SGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             ccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh--ccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            345566777777777776655444333322211  111112233467899999999999999999999999999997643


Q ss_pred             ---HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHh
Q 011514           87 ---PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        87 ---~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                         ..+...+..+.....++   ++.++++|+++|++. +...|+..+++.|++++++|++++++.+++.++|.++||.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~s---~~~l~~~~~l~gi~~-a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l  163 (1140)
T PRK06814         88 LKFAEIGIAALAIYGFHLNS---VPLLFAALFLMGIHS-ALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTII  163 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHH-HhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHH
Confidence               22222222233333467   899999999999755 77779999999999999999999999999999999999999


Q ss_pred             hHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          164 ARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       164 ~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      ++.+    +|+..|.... +..+..++..+.+|++++..+...                        ...+..++..+.+
T Consensus       164 ~g~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~  218 (1140)
T PRK06814        164 GGLATISGNFVILVALLM-GIAVLGWLASLFIPKTGNAAPDLK------------------------IDRNIIRSTITLL  218 (1140)
T ss_pred             HHHHHhccccHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCe------------------------eccchHHHHHHHH
Confidence            9874    7888884444 434444445555776643322110                        0000111234456


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                      +.+.++|.++...+..++.++.......++|.|+++.+|.++.+.|.+.+..+++.++++ ++.+++.|+..+++.+..+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~-~~~g~l~~~~~~~~~~~~~  297 (1140)
T PRK06814        219 KYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGS-FLASKLSEGRITLLYVPIG  297 (1140)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHH-HHHHHHhCCceeeeeehHH
Confidence            678888999988888888887878888899999999999999999999999999999998 6779999887766665555


Q ss_pred             HHHHHHHHHHHhhccc--hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          320 LFAACINMFICSISWS--AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      .++.++..+.+.+...  ...      .......+.|....+.  |            .+.+..+++|++.+...+...+
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~--~------------~~~~~~~~~g~~~~~~~~~~~~  357 (1140)
T PRK06814        298 ALLMGLFGLDLAFASSSVPAE------PAQLKSILVFLSKRHG--W------------RILIDLFGLAAAGGLYIVPLFA  357 (1140)
T ss_pred             HHHHHHHHHHHHhcccccccc------cccccchhhhhccccc--H------------HHHHHHHHHHHHHHHhHHHHHH
Confidence            5555444443333200  000      0000000111000000  0            0134455678888888888999


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      ++++.+|++.+|+++|+.++...++..+++.+.|.+.+.
T Consensus       358 ~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~  396 (1140)
T PRK06814        358 ALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQAL  396 (1140)
T ss_pred             HHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998864

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=1.1e-27  Score=234.42  Aligned_cols=336  Identities=12%  Similarity=0.001  Sum_probs=248.6

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCch----hHhHHHHHHH
Q 011514           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK----AMLTLPLTLS   91 (484)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk----~~l~~~~~~~   91 (484)
                      ..+....+.++..|.+|.+.+|+        +.+..+.|++.+++.++..++++++|+++||+|||    +.+.+.....
T Consensus        12 ~~~~~~~~~g~~~p~l~~~l~~~--------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~   83 (382)
T PRK11128         12 SYFGYFFAYGVFLPFWSVWLKGQ--------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF   83 (382)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHhc--------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence            35566677899999999999876        55667889999999999999999999999999994    3333222221


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----h
Q 011514           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----L  167 (484)
Q Consensus        92 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l  167 (484)
                        ........++   +|.+++.|++.|++. +...|...+++.|+  +++|+++.+..+...++|..+||.+++.    +
T Consensus        84 --~~~~~~~~~~---~~~l~i~~~l~g~~~-~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~  155 (382)
T PRK11128         84 --AVAFWFGAHS---FWLLFVAIGLFNLFF-SPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWF  155 (382)
T ss_pred             --HHHHHHhccc---HHHHHHHHHHHHHHH-cccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence              2223344567   788889999999755 55667788888877  4568888888888889999999999886    4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccch
Q 011514          168 STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVT  247 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (484)
                      |||.+|+..++...+..+ ..+..||++++++++                  +      +.++..++    ++.+.++|.
T Consensus       156 g~~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~~------------------~------~~~~~~~~----~~~i~~~~~  206 (382)
T PRK11128        156 GEQAILWILTAGVASMLL-GQLLRPTIMPQGESR------------------Q------QESAGWPA----WKALLKEPT  206 (382)
T ss_pred             ChhHHHHHHHHHHHHHHH-HHHccCCCCCccccc------------------c------ccccccch----HHHHHcChh
Confidence            899999887754444333 333344432211110                  0      00001112    233677888


Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      ++...+..++..........+.|.|.++ .|.++.+.|.+.+...+...+.. +..+++.||+++++.+..+....++..
T Consensus       207 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~~r~~~~~~l~~~~~~~~~~~  284 (382)
T PRK11128        207 VWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIF-AFSNRLFRRWSARDLLLLSAICGVVRW  284 (382)
T ss_pred             HHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence            8888887777777777788888999876 59999999999888888777777 777999999999999988888888887


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      +.+...++.+.                                      +....++.+++.+...+....+..+. ++++
T Consensus       285 ~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~  325 (382)
T PRK11128        285 GLMGSTTALPW--------------------------------------LIVIQILHCGTFTVCHLAAMRYIAAR-PGSE  325 (382)
T ss_pred             HHHHhhhhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHC-CHhh
Confidence            77766665555                                      24445577888887888888888876 5667


Q ss_pred             hhHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Q 011514          408 QGKAQGCIS-GISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       408 ~g~~~g~~~-~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +++.++..+ ....+|..+||.++|.++|..
T Consensus       326 ~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~  356 (382)
T PRK11128        326 VIRLQALYSALAMGGSIAIMTVLSGFLYQHL  356 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            799999887 445677799999999999986

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=3.8e-27  Score=232.26  Aligned_cols=368  Identities=13%  Similarity=0.087  Sum_probs=254.6

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----Cchh-HhHHH
Q 011514           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKA-MLTLP   87 (484)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~-~l~~~   87 (484)
                      +...+..++..+...+.+|.+.++.        +.+.++.|++..+...  .+..+++|+++||+     |||| .+..+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~--------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~   74 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVE--------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLT   74 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHH
Confidence            3445566778889999999999887        6666778988666664  68899999999999     8875 68888


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-  166 (484)
                      .++.+++..+..+.++...++.+++..++.+.+. +...++..+++.|+.|+|+|+++.++...+.++|.++|+.++.. 
T Consensus        75 ~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l  153 (402)
T PRK11902         75 QVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLS-ASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWL  153 (402)
T ss_pred             HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            8888888888888744333677777777777544 67778999999999999999999999999999999998876644 


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                          .|||.+|++.+++.++..+. .+..||++++++++                           ++..++.++.++.+
T Consensus       154 ~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~---------------------------~~~~~~~~~~~~~l  205 (402)
T PRK11902        154 ADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPP---------------------------RSLGEAVVGPLRDF  205 (402)
T ss_pred             HhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCccccccc---------------------------chhHHHHHHHHHHH
Confidence                38999999988776655443 45577754332111                           00001233445557


Q ss_pred             hccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      ++||.++...+..++..........+.+.++.+.+|+++.+.+.+....+.. ..++. ++.+++.||+++|+.+..+..
T Consensus       206 ~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~-~~~g~l~~r~g~~~~l~~~~~  284 (402)
T PRK11902        206 FSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGA-LAGGTLMVRLGLYRSLMLFGV  284 (402)
T ss_pred             HhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHH
Confidence            7888888777766666655444444555667777799999999988776654 56666 778999999999888776666


Q ss_pred             HHHHHHHHH---hhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHH----HHHHHhhhhhhh
Q 011514          322 AACINMFIC---SISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYAT----TAFSVLVVFATP  393 (484)
Q Consensus       322 ~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~  393 (484)
                      +..+..+.+   ...+ +.+.                                      +....    +..+++.+...+
T Consensus       285 ~~~l~~l~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~g~~~~~~~~  326 (402)
T PRK11902        285 LQAVSNLGYWVLAVTPKHLWT--------------------------------------MALAIGIENLCGGMGTAAFVA  326 (402)
T ss_pred             HHHHHHHHHHHHHhcCCcHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            555443332   2332 2222                                      01111    233444455555


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      ....++++..|    ++..+..+....++...++.++|.++|.. ++..       .|...+++.+++.+..++.+++
T Consensus       327 ~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~G~l~~~~-G~~~-------~f~~~~~~~~~~~~~~~~~~~~  392 (402)
T PRK11902        327 LLMALCNRSFS----ATQYALLSALASVGRVYVGPTSGYLVEAY-GWPG-------FYLMTVVIALPGLALLWLMRGT  392 (402)
T ss_pred             HHHHhcCCCCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ChHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence            55666666665    44456666667788877778999999987 6544       4566666666666665555544

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=3.6e-28  Score=235.75  Aligned_cols=332  Identities=13%  Similarity=0.054  Sum_probs=247.9

Q ss_pred             HHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc
Q 011514           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (484)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~  102 (484)
                      ......|.+|.+.+++        +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.+...++.+.+ ..+
T Consensus        15 ~~~~~~~~lp~l~~~~--------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~   85 (355)
T TIGR00896        15 ALTSVGPLLPQIRSAL--------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP   85 (355)
T ss_pred             ccccCcccHHHHHHHh--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence            3456788999998877        5566778999999999999999999999999999999999998888888777 667


Q ss_pred             chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh------hhHHHHHHH
Q 011514          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL------STTSAFQAA  176 (484)
Q Consensus       103 ~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l------~~~~~f~~~  176 (484)
                      +   .+.+++.|++.|++. +...+.....+.|+.| ++|+++++..+...++|..+++.+++.+      +||..|...
T Consensus        86 ~---~~~l~~~~~~~g~g~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~  160 (355)
T TIGR00896        86 G---TALLFAGTALIGVGI-AIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWW  160 (355)
T ss_pred             c---HHHHHHHHHHHHHHH-HHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            7   788899999999765 5555677788888886 6899999999999999999888776542      388888776


Q ss_pred             HHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHH
Q 011514          177 TIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAF  256 (484)
Q Consensus       177 ~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (484)
                      +...++..   ...+||.+++++++                  ++        ....+.++    ..++|..+...+..+
T Consensus       161 ~~~~~~~~---~~~~~~~~~~~~~~------------------~~--------~~~~~~~~----~~~~~~~~~~~~~~~  207 (355)
T TIGR00896       161 ALPALLAL---LAWIPQVRRRVAAN------------------QT--------TTRLTPVR----IWRSPLAWQVTVFFG  207 (355)
T ss_pred             HHHHHHHH---HHHhhhhccccCCC------------------CC--------CCCCCCch----hhcCHhHHHHHHHHH
Confidence            64433322   22345443221110                  00        00011122    345566666666666


Q ss_pred             HHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHhHHHHHHHHHHHhhccc
Q 011514          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFAACINMFICSISWS  335 (484)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~  335 (484)
                      +..........+.|.|+++ .|++..+.+...+...++.++++ +..+++.||+ ++|+.+..+..+.+++.+.+.+..+
T Consensus       208 ~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~-~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (355)
T TIGR00896       208 LQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASA-LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM  285 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence            6666677778899999987 49999999999999999999998 7779999999 4566666777777777666655443


Q ss_pred             hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC-CCchhHHHHH
Q 011514          336 AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG-PNEQGKAQGC  414 (484)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~  414 (484)
                      ...                                       .....+.|++.+...|...+.+.+..+ ++++++..++
T Consensus       286 ~~~---------------------------------------~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~  326 (355)
T TIGR00896       286 HGL---------------------------------------WAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAM  326 (355)
T ss_pred             hHH---------------------------------------HHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHH
Confidence            333                                       223346788888888887777665554 5677999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          415 ISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       415 ~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      .+...+++..++|.+.|.+.|+.+++..
T Consensus       327 ~~~~~~~~~~~gp~~~G~l~~~~g~~~~  354 (355)
T TIGR00896       327 AQSIGYLLAALGPLFVGVLHDISGNWLM  354 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            9999999999999999999999855543

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=1.6e-27  Score=230.67  Aligned_cols=384  Identities=18%  Similarity=0.156  Sum_probs=264.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhcc
Q 011514           43 LDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCE  122 (484)
Q Consensus        43 ~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~  122 (484)
                      .++.+.+. .-+.+.+++.+|.+++++..|.++||+|||..+.++.++..++.+++.++...+.+.+++++|++.|+.. 
T Consensus        53 ~s~~~~~~-lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~-  130 (485)
T KOG0569|consen   53 LSDSTLDL-LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLAC-  130 (485)
T ss_pred             CChHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-
Confidence            34444444 4478899999999999999999999999999999999999988888887766555899999999999866 


Q ss_pred             chhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh------hhhHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 011514          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~  196 (484)
                      |.......-|+.|..|++.||......+.+..+|.++|..++.-      -.|++.+....+.+++..+ ...++||+|+
T Consensus       131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~-~l~~~PESPk  209 (485)
T KOG0569|consen  131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLA-LLPFLPESPK  209 (485)
T ss_pred             HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHH-HHhcCCCCcc
Confidence            77777899999999999999999999999999999999665532      3588888888866655544 4556999998


Q ss_pred             CCCC-CCCCCCccccc---ccccCCCCCCCC------ccCcccCCCCchHHHHHHhhccchhHH----HHHHHHHHhchh
Q 011514          197 NDDD-DDLTRPIITEE---TEGVNQNESNSP------VKIPVCKKIPSIRDLICLLRSSVTLSQ----AAVVAFFSGLSE  262 (484)
Q Consensus       197 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~  262 (484)
                      +.-. ++|+++++...   ....+++++.+.      .++..+++..++++    +.+++.++.    .+...+...+..
T Consensus       210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~----~~~~~~lR~~~~i~~~v~~~qq~sG  285 (485)
T KOG0569|consen  210 YLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQ----LLKNPTLRRPLLIGIVVSFAQQFSG  285 (485)
T ss_pred             hHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHH----HhcCcchhHHHHHHHHHHHHHHhcC
Confidence            7433 33333333221   111111111100      01111123335556    334444333    333333333333


Q ss_pred             h-hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHH
Q 011514          263 G-GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKI  341 (484)
Q Consensus       263 ~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (484)
                      . ....+....+++ .|++..++-+.....+....+.. +++.++.||.|||++++.+..++.+..+++.........  
T Consensus       286 i~ai~~Yst~i~~~-aG~~~~~a~~an~~~g~v~~~~t-~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~--  361 (485)
T KOG0569|consen  286 INAIFFYSTSIFKT-AGFTPEEAQYANLGIGIVNLLST-LVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNS--  361 (485)
T ss_pred             cceeHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            2 334344444554 49999999999999999999998 888999999999999999999988887776544321110  


Q ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhh-hhhhhHHHHHHhcccCCCchhHHHHHHHHHHH
Q 011514          342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLV-VFATPSFRSIVSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       342 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                      .              ..+.++.             .+...+++.... -+..|..+-+.+|.+|++.|..+++....++.
T Consensus       362 ~--------------~~~~~y~-------------~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w  414 (485)
T KOG0569|consen  362 F--------------GSWLSYL-------------CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNW  414 (485)
T ss_pred             h--------------hhHHHHH-------------HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHH
Confidence            0              0000000             122222333333 33578888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCC
Q 011514          421 FANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  473 (484)
Q Consensus       421 lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (484)
                      +.+++-...+..+.+.. +. .       .|+...+...+..+..++.-+|+|
T Consensus       415 ~~~fiv~~~fp~l~~~~-g~-~-------~filF~i~~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  415 LSNFIVGFAFPPLQNVI-GP-Y-------VFILFVIPLAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHHHHHHHh-cc-h-------hhHHHHHHHHHHHHHHHHhCcccC
Confidence            99999999999998887 33 2       455555555555555555555544

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=4.3e-28  Score=236.33  Aligned_cols=344  Identities=17%  Similarity=0.169  Sum_probs=245.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ..+..++..++...+.....|.+|.+.++.+       +.+..+.|++.+.+.++..+++++.|+++||+|||+.+..+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   74 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDL-------GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSL   74 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHh-------CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence            3456777777888888888999996443332       556667899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-
Q 011514           89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-  166 (484)
Q Consensus        89 ~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-  166 (484)
                      ++..++.+++++++ +   ++.+++.|+++|+++ +.. +...++++|++|+++|+++.++.....++|..+++.++.. 
T Consensus        75 ~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l  149 (366)
T TIGR00886        75 LLLAIPCLWAGLAVQS---YSVLLLLRLFIGIAG-GSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPI  149 (366)
T ss_pred             HHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhc-hhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99999999999998 8   888899999999764 544 5678999999999999999999997777776666655432 


Q ss_pred             -------------hhhHHHH-HHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCC
Q 011514          167 -------------LSTTSAF-QAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (484)
Q Consensus       167 -------------l~~~~~f-~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (484)
                                   .+||+.| ...+++..+..++.....+|++++++++++.+           ..++..    .  .+.
T Consensus       150 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~----~--~~~  212 (366)
T TIGR00886       150 IGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLS-----------FKGARW----S--VGT  212 (366)
T ss_pred             HHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcc-----------cccccc----c--ccc
Confidence                         2699999 44455555555555555676654322110000           000000    0  001


Q ss_pred             CchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011514          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (484)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  312 (484)
                      +..++..+ ..++|+++...+..++..........+.|.|+++.+|+++.+.+.+.....+...++. ++.+++.||+|+
T Consensus       213 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~r~g~  290 (366)
T TIGR00886       213 GALGDQLK-VFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLAR-PLGGAISDRLGG  290 (366)
T ss_pred             hhHHHHHH-HHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHh-hccchHHHhhcc
Confidence            11112222 4456777777777666666667788899999999999999999988888888888888 777999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHhhccc----hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhh
Q 011514          313 AKLLSLGLFAACINMFICSISWS----AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLV  388 (484)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  388 (484)
                      |+....+......+...+.....    .+.                                      ......+...+.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~  332 (366)
T TIGR00886       291 ARKLLMSFLGVAMGAFLVVLGLVSPLSLAV--------------------------------------FIVLFVALFFFS  332 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCcchHHH--------------------------------------HHHHHHHHHHHh
Confidence            88777766665555544443222    111                                      022222344445


Q ss_pred             hhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          389 VFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       389 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                      +...+...+...+..| +++|++.|+.+...++|
T Consensus       333 g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       333 GAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             ccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            5555666677777777 79999999999988765

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.8e-27  Score=265.26  Aligned_cols=360  Identities=15%  Similarity=0.119  Sum_probs=265.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      +.+.+..+++..++..++.......+..+....+  +.   +.+....+++.+++.++..++++++|+++||+|||++++
T Consensus         7 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~   81 (1146)
T PRK08633          7 KIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAY--DG---SEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR   81 (1146)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--Cc---ccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH
Confidence            3556667777777777666544444433333322  22   223456799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           86 LPLTLSIIPLAILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~---~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .+.++..+..++..+   .++   ++.+++.|+++|++. +...++..++++|++|+++|++++++.+.+.++|.++||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~r~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~  157 (1146)
T PRK08633         82 IVKLFEVGLTLLIVLAYYLGW---FWLAFAVTFLLGAQS-AIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTA  157 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHH-HhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHH
Confidence            988776666555443   456   889999999999755 7777899999999999999999999999999999999999


Q ss_pred             hhHhhh-------------hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCccc
Q 011514          163 AARFLS-------------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (484)
Q Consensus       163 l~~~l~-------------~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (484)
                      +++.+.             |++.+.+..+...+..++..+.+||+++....+.                 +     ....
T Consensus       158 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~-----~~~~  215 (1146)
T PRK08633        158 LFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF-----------------D-----KKKY  215 (1146)
T ss_pred             HHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc-----------------c-----cccc
Confidence            988742             2333333333333333344445677654332210                 0     0000


Q ss_pred             CCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChh-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011514          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN-QFADLMLIAGLAGTISQLLFMPLLAP  308 (484)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~  308 (484)
                      ......++.++.++++|.++...+..++..........++|.|+++.+|++.. +.+++.+..+++.+++. ++.+++.|
T Consensus       216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~-~~~g~l~~  294 (1146)
T PRK08633        216 LFPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGS-LLAGRLSG  294 (1146)
T ss_pred             ccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHhC
Confidence            01112344455677788888777777777767777788899999998999998 88999999999888888 77799999


Q ss_pred             hhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhh
Q 011514          309 ILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLV  388 (484)
Q Consensus       309 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  388 (484)
                      |+++++.+.++.++.+++.+.+.+..+.+.                                      ..+..++.+++.
T Consensus       295 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~  336 (1146)
T PRK08633        295 RHIELGLVPLGALGLALSLFLLPTAPSLAS--------------------------------------VLVLFFLFGFSA  336 (1146)
T ss_pred             CceEccchhHHHHHHHHHHHHHHHhhhHHH--------------------------------------HHHHHHHHHHHH
Confidence            999988888887777777776665554433                                      244455778888


Q ss_pred             hhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          389 VFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       389 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      ++..+...+++.+..|++.||+++|+.+++..++..+++.+++.+..
T Consensus       337 ~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~  383 (1146)
T PRK08633        337 GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG  383 (1146)
T ss_pred             HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999888887776654

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.97  E-value=4e-27  Score=231.79  Aligned_cols=375  Identities=11%  Similarity=0.057  Sum_probs=259.4

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |.++.+....++...+.+...|.+|.+.++..       +.+..+.|++.+++.++..++++++|+++||+|||+.++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~   74 (396)
T TIGR00882         2 TNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVN-------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI   74 (396)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            45677777888889999999999999987643       55567789999999999999999999999999999999887


Q ss_pred             HHHHHHHHHHH---Hhccch--hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           88 LTLSIIPLAIL---AYRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        88 ~~~~~i~~~~~---~~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      ....+++....   .+.+..  .......+.|++.|++. +...+....+..|..+  ++++.++......++|..+||.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~  151 (396)
T TIGR00882        75 ISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVF-SAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCAS  151 (396)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHH
Confidence            76665544322   222210  11344566788888654 5556677777777543  3455677888888999999999


Q ss_pred             hhHh---hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          163 AARF---LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       163 l~~~---l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +++.   .+||.+|++.+.+.++..++.+...||++++++.+               +..+  +     +++.++.++ .
T Consensus       152 ~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~--~-----~~~~~~~~~-~  208 (396)
T TIGR00882       152 IAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVA---------------NALG--A-----NASAFSLKL-A  208 (396)
T ss_pred             HHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhh---------------cccc--c-----ccCCCCHHH-H
Confidence            9886   48999999988887777666555444443221110               0000  0     000111222 2


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +...++|.++...+..+...........+.+.|.++.+   +.+..+.|...+...+...+.. ...+++.||+++|+.+
T Consensus       209 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~-~~~g~l~~r~g~~~~l  287 (396)
T TIGR00882       209 LELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIM-FCAPLIINRIGAKNAL  287 (396)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhH
Confidence            33566777776666665555555556667788887765   4556667888888888888887 6669999999999999


Q ss_pred             HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          317 SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      .++..+.++........++.+.                                      +.....+.+.+.........
T Consensus       288 ~~~~~l~~l~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~  329 (396)
T TIGR00882       288 LIAGTIMSVRIIGSSFATTALE--------------------------------------VVILKMLHAFEVPFLLVGCF  329 (396)
T ss_pred             HHHHHHHHHHHHHHHhcCChHH--------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            8888888877776666555554                                      12233355555554444555


Q ss_pred             HHHhcccCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHH
Q 011514          397 SIVSKQVGPNEQGKAQGC-ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAF  462 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~-~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (484)
                      .+..+..|++.+++..+. .+....+|+.++|.+.|.+.|.. +++.       .|.+.+++.++..
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~-G~~~-------~f~~~~~~~~i~~  388 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSI-GFQG-------AYLVLGCIVLLFT  388 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhc-ccHH-------HHHHHHHHHHHHH
Confidence            667777888888887766 67889999999999999999986 6554       3455555444433

>TIGR00901 2A0125 AmpG-related permease

Probab=99.96  E-value=3.2e-27  Score=229.23  Aligned_cols=319  Identities=15%  Similarity=0.069  Sum_probs=235.7

Q ss_pred             HHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----CchhH-hHHHHHHHHHHHHH
Q 011514           24 TMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAM-LTLPLTLSIIPLAI   97 (484)
Q Consensus        24 ~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~-l~~~~~~~~i~~~~   97 (484)
                      .+...+.+|.+.+|.        +.+..+.|+..+. .+...+ .+++|+++||+     ||||. ++.+.+..++....
T Consensus         4 ~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~   73 (356)
T TIGR00901         4 LGLVGNTLPYWLRSK--------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLI   73 (356)
T ss_pred             chhHHhHHHHHHHHc--------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            356678889888876        5556677887655 555554 89999999998     89887 56778888888777


Q ss_pred             HHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hh-----
Q 011514           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LS-----  168 (484)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~-----  168 (484)
                      .++.++....+.+....++.+.+. +...+...+++.|++|+|+|+++.++...+.++|.++++.+++.    .+     
T Consensus        74 l~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~  152 (356)
T TIGR00901        74 LSFLVPSTDLPLLAGLAFLIAFFS-ATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGL  152 (356)
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence            777755444667777777888544 66678899999999999999999999999999999999988864    46     


Q ss_pred             ---hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhcc
Q 011514          169 ---TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (484)
Q Consensus       169 ---~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (484)
                         ||.+|++.++..++..+..++..||++++++++                           +++.++.++.++.++++
T Consensus       153 ~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~  205 (356)
T TIGR00901       153 ITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVP---------------------------KPLTQAVLKPIREFFQR  205 (356)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccc---------------------------hhHHHHHHHHHHHHHHh
Confidence               999999998777665555555566643211100                           00001223344445666


Q ss_pred             ch---hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          246 VT---LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       246 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      |.   ++...+..++.........++.|.|+++ +|+++.+.+......+.. ..++. ++.+++.||+|+|+.+..+.+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~-~~~g~l~~r~g~~~~l~~~~~  283 (356)
T TIGR00901       206 KNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGG-LIGGIIMQPLNILYALLLFGI  283 (356)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHH-HHHHHHHhhhhHHHHHHHHHH
Confidence            64   6666666677777777888899999988 799999999888877754 45555 788999999999998888877


Q ss_pred             HHHHHHHHHhhcc-c----------hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhh
Q 011514          322 AACINMFICSISW-S----------AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVF  390 (484)
Q Consensus       322 ~~~~~~~~~~~~~-~----------~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  390 (484)
                      +.++....+.+.. +          .+.                                      +.....+.+++.+.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~~~~~~~  325 (356)
T TIGR00901       284 VQALTNAGFVWLASNGHHDGITFPHLLM--------------------------------------LFLTITLEAVTGGL  325 (356)
T ss_pred             HHHHHHHHHHHHHhcCcccccccchHHH--------------------------------------HHHHHHHHHHHhHH
Confidence            7766655444321 1          111                                      13344466888889


Q ss_pred             hhhHHHHHHhcccCCCchhHHHHHHHHHHH
Q 011514          391 ATPSFRSIVSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       391 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                      ..+...++.+|.+|+++||+.+|+.++..+
T Consensus       326 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       326 GTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            999999999999999999999999988765

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.6e-28  Score=237.50  Aligned_cols=366  Identities=15%  Similarity=0.125  Sum_probs=273.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccc
Q 011514           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (484)
Q Consensus        44 ~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (484)
                      +++..+..+.|++.+.++.|+++++.+.|+++||+|-|+++..+.++.++++++.+.+.+.+. +.+++.|+++|++ .|
T Consensus        66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~-~~~~~~R~lqGl~-~g  143 (466)
T KOG2532|consen   66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF-YLLLVLRFLQGLG-QG  143 (466)
T ss_pred             ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHhHHH-Hh
Confidence            467788899999999999999999999999999999999999999999999999999877553 4779999999975 48


Q ss_pred             hhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 011514          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (484)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~  198 (484)
                      ...|+...+.++|.|++||++..++..++..+|.+++..++|.     +||+.+|++.++++++..++...+..|+|.++
T Consensus       144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h  223 (466)
T KOG2532|consen  144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH  223 (466)
T ss_pred             HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccC
Confidence            8889999999999999999999999999999999988877765     59999999999999888887777777777654


Q ss_pred             CCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcC
Q 011514          199 DDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH  278 (484)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  278 (484)
                      +.-.+      .|.+..++...+   .+..++...++++    +.+++.+|...+..+........+..+.|.|+++.+|
T Consensus       224 ~~is~------~El~~I~~~k~~---~~~~~~~~vP~~~----i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~  290 (466)
T KOG2532|consen  224 PNISE------KELKYIEKGKSE---AHVKKKPPVPYKA----ILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLG  290 (466)
T ss_pred             CCCCH------HHHHHHHhcccc---cccCCCCCCCHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhC
Confidence            32100      000000000000   0000012335555    7788999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---------hHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHH
Q 011514          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE---------AKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKL  349 (484)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (484)
                      +|..+.|++.++..+...+.. ++.|.++||..+         |..-.++....++.++.+++.+.....          
T Consensus       291 f~v~~~G~~salP~l~~~~~k-~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~----------  359 (466)
T KOG2532|consen  291 FDVRETGFLSALPFLAMAIVK-FVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRL----------  359 (466)
T ss_pred             CChhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcch----------
Confidence            999999999999999999998 788999998754         223355666667777777766642220          


Q ss_pred             HHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHh-hhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 011514          350 LLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVL-VVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL  428 (484)
Q Consensus       350 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~  428 (484)
                                                 ........+.+ .+...+..+.-..+.. |++.+.++|+.+....++.+++|.
T Consensus       360 ---------------------------~a~~~l~~~~~~~g~~~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~~~~~~P~  411 (466)
T KOG2532|consen  360 ---------------------------LAVILLTIAIGLSGFNISGFYKNHQDIA-PQHAGFVMGIINFVGALAGFIAPL  411 (466)
T ss_pred             ---------------------------HHHHHHHHHHHHcccchhhhHhhhhhcc-chHHHHHHHHHHHHHHHHHHHHHH
Confidence                                       01111122222 2222333333333334 489999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          429 IFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       429 i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      +.|.+....-..++..     +|++.+++.+++.+.....
T Consensus       412 ~vg~~~~~~t~~eW~~-----VF~i~a~i~~~~~i~f~~f  446 (466)
T KOG2532|consen  412 LVGIIVTDNTREEWRI-----VFLIAAGILIVGNIIFLFF  446 (466)
T ss_pred             heeeEeCCCCHHHHHH-----HHHHHHHHHHHhchheeEe
Confidence            9999984210112222     6777777777766554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.96  E-value=1.9e-26  Score=230.26  Aligned_cols=348  Identities=14%  Similarity=0.104  Sum_probs=255.5

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCchh-HhHHHHHHHH
Q 011514           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLPLTLSI   92 (484)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~-~l~~~~~~~~   92 (484)
                      +......++..+.++.+..+.+       ++++.+.|++.++..+..++..|+.|.++||    +|||| .++.+....+
T Consensus         9 ~~~~~~~~~~~~~l~~~~~~~~-------g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~   81 (437)
T TIGR00792         9 FGNNFIFAIVSTYLLFFYTDVL-------GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFS   81 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHH
Confidence            3444555666666777766543       6677888999999999999999999999998    67754 5678888888


Q ss_pred             HHHHHHHhccchh---hHHHHHHHHHHhhhhccchhhHhhhHHHhhcC-CccchhHHHHHHHHHHHhHHhHHHHhhH---
Q 011514           93 IPLAILAYRRSIS---FFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR---  165 (484)
Q Consensus        93 i~~~~~~~~~~~~---~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~---  165 (484)
                      ++.+++...++.+   ..+.+++.+++.+++. +...+...++..|.+ ++++|++..++.+....+|..+++.+.+   
T Consensus        82 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~  160 (437)
T TIGR00792        82 IVLVLLFTTPDFSATGKLVYAYITYILLGLFY-SFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLV  160 (437)
T ss_pred             HHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887766531   2456677788888654 444456788889987 4789999999998888887665543321   


Q ss_pred             --------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH
Q 011514          166 --------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (484)
Q Consensus       166 --------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (484)
                              ..+||..+.+.+++..+..+...+..||++++.+++                           ++++.+.++
T Consensus       161 ~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~---------------------------~~~~~~~~~  213 (437)
T TIGR00792       161 SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKN---------------------------IEKKLSLKQ  213 (437)
T ss_pred             HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcc---------------------------cccCCCHHH
Confidence                    247999999988888877777767677754211110                           011124566


Q ss_pred             HHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH
Q 011514          238 LICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  317 (484)
                      .++.+.++|.++...+..++..........+.+.|.++.++ ++.+.+.+.....++.+++. ++.+++.||+|+|+.+.
T Consensus       214 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~g~~~~~~  291 (437)
T TIGR00792       214 IFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV-LLFPRLVKKFGRKILFA  291 (437)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHH
Confidence            67778888998888888887777776666666777776666 55566777777778888887 66799999999999998


Q ss_pred             HhHHHHHHHHHHHhhccc-hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          318 LGLFAACINMFICSISWS-AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      .+..+.+++.+.+.+..+ .+.                                      ......+.+++.+...+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~  333 (437)
T TIGR00792       292 GGILLMVLGYLIFFFAGSNLPL--------------------------------------ILVLIILAGFGQNFVTGLVW  333 (437)
T ss_pred             HHHHHHHHHHHHHHHcchhHHH--------------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence            888887777766655432 222                                      13344466777888888888


Q ss_pred             HHHhcccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          397 SIVSKQVG-------PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       397 ~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      ++.+|..|       ++.+|.++|+.+....++..+++.+.|.+.+.. ++.
T Consensus       334 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~-G~~  384 (437)
T TIGR00792       334 ALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII-GYV  384 (437)
T ss_pred             HHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            88888765       566899999999999999999999999999986 543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.6e-25  Score=204.05  Aligned_cols=349  Identities=16%  Similarity=0.133  Sum_probs=280.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      -.+..+....++.++......+.+|.+.+.+        +++..+.+++...+..++.+++++.|.+.+|+|+|+-++.+
T Consensus        13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f--------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lg   84 (422)
T COG0738          13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVF--------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLG   84 (422)
T ss_pred             eHHHHHHHHHHHHHHHhhcchhhHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHH
Confidence            3444555556777788888899999888776        77788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      +.++++++.++.-+.+...+..++++-++.|.+. +...++++.+++...|+++..+.+++.+..+++|.++||.+++.+
T Consensus        85 L~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi-~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~l  163 (422)
T COG0738          85 LLLYAVGAALFWPAASSKSYGFFLVALFILASGI-GLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSL  163 (422)
T ss_pred             HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhh-HHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999975544444788899999999655 888889999999999999999999999999999999999988752


Q ss_pred             -----------------------hhHHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCCCCCCCcccccccccCCCCCCCC
Q 011514          168 -----------------------STTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETEGVNQNESNSP  223 (484)
Q Consensus       168 -----------------------~~~~~f~~~~~~~~i~~~~~~~-~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (484)
                                             .++.+|...+....+..+.... ..||.++..+++                      
T Consensus       164 ils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~~~~----------------------  221 (422)
T COG0738         164 ILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAAPSL----------------------  221 (422)
T ss_pred             HHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcccccc----------------------
Confidence                                   2467777776554444333322 122222221111                      


Q ss_pred             ccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHH
Q 011514          224 VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFM  303 (484)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  303 (484)
                            .+.++.  ....++++|.++...+..|++...+....++++.|+.+..|.+..+.+...+..-.+.++++ +++
T Consensus       222 ------~~~~~~--~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGR-Fig  292 (422)
T COG0738         222 ------GASGSA--GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGR-FIG  292 (422)
T ss_pred             ------cccccc--hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH-HHH
Confidence                  011110  23337788999999999999999999999999999999879999999999999999999999 777


Q ss_pred             HHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHH
Q 011514          304 PLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTA  383 (484)
Q Consensus       304 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (484)
                      .++.+|+...+.+.....+..+.++...+.++.+.                                       ++...+
T Consensus       293 ~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~g~v~---------------------------------------~~~l~~  333 (422)
T COG0738         293 SALMSRIKPEKYLAFYALIAILLLLAVALIGGVVA---------------------------------------LYALFL  333 (422)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcChHH---------------------------------------HHHHHH
Confidence            88888999999988888887777777778887666                                       777789


Q ss_pred             HHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          384 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       384 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .|++.+..+|...+...+..| ++.. ..|..-...-+|+++-|.+.|++.|..
T Consensus       334 ig~F~simfPTIfslal~~l~-~~ts-~~s~~l~maivGGAiiP~l~G~i~d~~  385 (422)
T COG0738         334 IGLFNSIMFPTIFSLALKNLG-EHTS-VGSGLLVMAIVGGAIIPPLQGVIADMF  385 (422)
T ss_pred             HHHHhHHHHHHHHHHHHhccC-cccc-ccceeeeeheecchHHHHHHHHHHHhh
Confidence            999999999999999999999 4433 344445566678899999999999987

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.96  E-value=1.1e-24  Score=213.90  Aligned_cols=373  Identities=12%  Similarity=0.093  Sum_probs=249.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHH--HHHHHHHHHHHHhhhhh-cccccCchhHhHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQ--QAIIGLGTLVMMPVIGN-LSDQYGRKAMLTL   86 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~--~s~~~l~~~~~~~~~G~-l~Dr~Grk~~l~~   86 (484)
                      ...+....+..++..++..|.+|.+.+|.        +.+..+.|++  .++..+...+.+|+++. .+||+||||..++
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~--------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~   74 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLRED--------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVL   74 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHH
Confidence            44556667888888999999999999887        4555677886  46778889899999955 7999999998755


Q ss_pred             HHHH-HHHHHHHHH-hccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           87 PLTL-SIIPLAILA-YRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        87 ~~~~-~~i~~~~~~-~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      ...+ ......... +........+++..-++.+.+. ....+...++..|..++++++...+....+..+|.++|+...
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~  153 (390)
T TIGR02718        75 PMQCLVSACLASLALVGPDVAGAGWAVGLLACASLAS-ATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGT  153 (390)
T ss_pred             HHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5433 232222222 2111111223334444444333 556677888888988888888888888888888999888654


Q ss_pred             H----hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH
Q 011514          165 R----FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (484)
Q Consensus       165 ~----~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (484)
                      +    ..+||.+|++.+.+..+..+..++..||++++++++                           ++   ..++ .+
T Consensus       154 ~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~~---------------------------~~---~~~~-~~  202 (390)
T TIGR02718       154 LVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVASPEAP---------------------------LA---RRAS-LF  202 (390)
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCccccc---------------------------hh---hHHH-HH
Confidence            4    469999999999887776666544333322111000                           00   1111 23


Q ss_pred             HhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhH
Q 011514          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (484)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  320 (484)
                      ...|+|.++......++..........+.+.|++|. |+++++.|......+....+.+.+..+++.||+|+|+.+..+.
T Consensus       203 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~-G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       203 RFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDA-GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhc-CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            356677788777777888777788888899999885 9999999999888876555554477899999999999888776


Q ss_pred             HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          321 FAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      .+.++...........+..                    ...+.            +.....+.++..+...+...+...
T Consensus       282 ~~~~~~~~~~~~~~~~~~~--------------------~~~~~------------~~~~~~~~~~~~g~~~~~~~~~~~  329 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLA--------------------PGIAV------------AWSCSAFGSLITGITSVAIYTAFM  329 (390)
T ss_pred             HHHHHHHHHHHHHHHcccC--------------------CcHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6553332222111111000                    00000            011222334556666777777777


Q ss_pred             cccCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHH
Q 011514          401 KQVGP-NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI  463 (484)
Q Consensus       401 ~~~p~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (484)
                      +..++ +++|+.++..+...++|..++|.++|.++|.. +++.       .|.+.+++.+++..
T Consensus       330 ~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-G~~~-------~f~~~~~~~l~a~~  385 (390)
T TIGR02718       330 RFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-GYAG-------GFLSGTVLAVLAIL  385 (390)
T ss_pred             HHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHH-------HHHHHHHHHHHHHH
Confidence            77766 88999999999999999999999999999986 5544       44555555555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.95  E-value=5.8e-28  Score=225.61  Aligned_cols=368  Identities=14%  Similarity=0.164  Sum_probs=254.8

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhH
Q 011514            4 EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM   83 (484)
Q Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~   83 (484)
                      ++..+...++++...+...+.+.+..+++...+.+        +++....|++++++.+.+.+++|+.|+++|||+||++
T Consensus        29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f--------ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v  100 (493)
T KOG1330|consen   29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF--------NISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV  100 (493)
T ss_pred             ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc--------CCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE
Confidence            34456677888899999999888888777776555        4445566999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHh
Q 011514           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        84 l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      +..|..++.++.++.+++..   +|++.++|.+.|+ +.+...|.++++++|.+|+++|++.+++++.+..+|..+|.+.
T Consensus       101 ~~vG~~iW~~Av~~~~fs~~---Fwq~~l~R~~vGi-GeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vv  176 (493)
T KOG1330|consen  101 IAVGIFIWTLAVFASGFSNH---FWQVLLCRGFVGI-GEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVV  176 (493)
T ss_pred             EeeHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc-chhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEe
Confidence            99999999999999999977   9999999999997 5688889999999999999999999999999999998888777


Q ss_pred             hHhh-----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH
Q 011514          164 ARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (484)
Q Consensus       164 ~~~l-----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (484)
                      +...     .||+.|+..++++++..++..++++|+++...++.+                .   +..........+++ 
T Consensus       177 gs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~----------------~---~~~~~~~~ts~~kD-  236 (493)
T KOG1330|consen  177 GSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVD----------------G---ENKMVKPFTSVWKD-  236 (493)
T ss_pred             eeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccccc----------------c---CCcCCCCccchHHH-
Confidence            6552     499999999999999999999999998765333210                0   00001111223334 


Q ss_pred             HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHh---hhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc----
Q 011514          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK---AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG----  311 (484)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g----  311 (484)
                      .+.+.++|.+....+......+..+.+.-+.|.+..   +..|++..+..++..+...++.++. +.++.++||+.    
T Consensus       237 l~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGv-l~Ggiisd~~~~~~~  315 (493)
T KOG1330|consen  237 LKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGV-LFGGIISDKLSRIFP  315 (493)
T ss_pred             HHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhh-eehHHHHHHHHHhcc
Confidence            333555566555555555555555554445554333   3335666665566666666677776 77788888743    


Q ss_pred             chHHHHHhHHHHHHHH-------HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHH
Q 011514          312 EAKLLSLGLFAACINM-------FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAF  384 (484)
Q Consensus       312 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (484)
                      +........+..+.+.       .+.........                        +             ..+..+++
T Consensus       316 ~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~------------------------~-------------~~~il~~~  358 (493)
T KOG1330|consen  316 NSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSM------------------------I-------------FGLILFLV  358 (493)
T ss_pred             cccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHH------------------------H-------------HHHHHHHH
Confidence            2122222222222221       11111111111                        0             02222233


Q ss_pred             HHhhhhhhh-HHHHHHhcccCCCchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcCC
Q 011514          385 SVLVVFATP-SFRSIVSKQVGPNEQGKAQGCISGISSFANI-VSPLIFSPLTALFLSKG  441 (484)
Q Consensus       385 g~~~~~~~~-~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~-~gp~i~g~l~~~~~~~~  441 (484)
                      |......+. ...-+..+.+|+++|.+++++...+..+.+- -+|.+.|.+.|+..+++
T Consensus       359 g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  359 GETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             HHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            333222222 2334667889999999999999888776554 45559999999876655

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.95  E-value=4.1e-25  Score=221.14  Aligned_cols=391  Identities=10%  Similarity=-0.037  Sum_probs=261.8

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCchhH
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAM   83 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~   83 (484)
                      +++|.++.++...+...+++....+.+|.|.++.     .+.+.+..+.|++.+.+.++..++.+++|+++|| +|||++
T Consensus         7 ~~p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~-----~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~   81 (475)
T TIGR00924         7 GHPKPLFTLFFVELWERFSYYGMQGILAVYLVQQ-----AGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT   81 (475)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH
Confidence            4567788889999999999999999999998753     1236666788999999999999999999999999 899999


Q ss_pred             hHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccc---hhHHHHHHHHHHHhHHhHH
Q 011514           84 LTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ---RASAFGILLGVLSASFVCG  160 (484)
Q Consensus        84 l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~g~~ig  160 (484)
                      +..+.++.+++.++.+++++   .+.+++.|++.|++. |...|...++++|++|+++   |++++++.....++|..+|
T Consensus        82 l~~~~~~~~~g~~~~~~~~~---~~~~~~~~~l~g~g~-g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig  157 (475)
T TIGR00924        82 MVLGGIVLMLGHFMLAMSIY---PDLIFYGLGTIAVGS-GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFIS  157 (475)
T ss_pred             HHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHH
Confidence            99999999999999999888   778888999999755 7777889999999998754   8889999999999999999


Q ss_pred             HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCC-CCCcccccccc--------------cCCCCCC
Q 011514          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL-TRPIITEETEG--------------VNQNESN  221 (484)
Q Consensus       161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~-~~~~~~~~~~~--------------~~~~~~~  221 (484)
                      |.+++.    .+|++.|.+.++..++. ++.+...++..++.+++++ .++........              .....+.
T Consensus       158 ~~l~g~l~~~~g~~~~f~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (475)
T TIGR00924       158 PLLAGVIAENYGYHVGFNLAAVGMVIG-LLTFFAGRHMLRDIGSVPDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHV  236 (475)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHcccccccCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            998876    38999999887544443 3333333432211111000 00000000000              0000000


Q ss_pred             CCccC-------------cccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhh----H
Q 011514          222 SPVKI-------------PVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ----F  284 (484)
Q Consensus       222 ~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~  284 (484)
                      .....             ......+...+  ....+.+.+..+.+...+++..+....+.++.+.++..+.+...    .
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~  314 (475)
T TIGR00924       237 VIANILLMTVTLAVIIFFFRLAFKPRLDA--VARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPV  314 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCH--HHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECH
Confidence            00000             00000000000  00011123444555566666677777777888877764443222    5


Q ss_pred             HHHHHHHHHHHHHHHHHHHH---Hhhhh-hcchHHH--HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhh
Q 011514          285 ADLMLIAGLAGTISQLLFMP---LLAPI-LGEAKLL--SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRK  358 (484)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~---~l~~~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  358 (484)
                      +++.+..++..++.++++..   ++.|| .+.+...  .+|.++.++++..+.+......                 ...
T Consensus       315 ~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~-----------------~~~  377 (475)
T TIGR00924       315 IWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFAD-----------------AGG  377 (475)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------CCC
Confidence            78888888888888855532   33333 2223333  6677777777776654210000                 000


Q ss_pred             hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          359 QISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      ..++|+            ++...++.+++.....|..+++..+..|++.||+++|+......+|..+++.+.+...+.
T Consensus       378 ~~s~~~------------~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~  443 (475)
T TIGR00924       378 LTSPWF------------MVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP  443 (475)
T ss_pred             ccCHHH------------HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            111121            255666899999999999999999999999999999999999999999988888766543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.6e-27  Score=217.75  Aligned_cols=355  Identities=17%  Similarity=0.151  Sum_probs=267.4

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhC------------------------------------------CCCCCchh
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALC------------------------------------------PGLDECSL   48 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------~g~~~~~~   48 (484)
                      ..+..+.+.+.+-...+.|.+|.+..|..+                                          .+..+.+.
T Consensus        24 viv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~~~~  103 (464)
T KOG3764|consen   24 VIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAISLDR  103 (464)
T ss_pred             EEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccCccc
Confidence            345677788888889999999999988742                                          00122344


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHh
Q 011514           49 AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (484)
Q Consensus        49 ~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~  128 (484)
                      +.+++|++.+...+.+++.+|+.|.+.||+|+|..+++|......+++++++.++   +++++++|.+||++. ++...+
T Consensus       104 e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s---y~~l~vAR~LQgvgs-A~~~ts  179 (464)
T KOG3764|consen  104 ENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS---YPMLFVARSLQGVGS-AFADTS  179 (464)
T ss_pred             cccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch---hHHHHHHHHHhhhhH-HHHHhh
Confidence            5568899999999999999999999999999999999999999999999999999   899999999999755 777789


Q ss_pred             hhHHHhhcCCcc-chhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCC
Q 011514          129 ALAYVADNISER-QRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (484)
Q Consensus       129 ~~~~i~~~~~~~-~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~  203 (484)
                      ..++++|.+|+| +|++++|+...+.++|.++||..||.+    |.+.+|.+.+++.++...+.++.++.++.++++.  
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~~~~~--  257 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMDPDST--  257 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccCcccc--
Confidence            999999999965 589999999999999999999999874    8899999999999888888777666544433221  


Q ss_pred             CCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhh
Q 011514          204 TRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ  283 (484)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  283 (484)
                                                .+..++++    +.++|..+.........+.........++.+..|.+..+..+
T Consensus       258 --------------------------~~~~~~~~----Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~  307 (464)
T KOG3764|consen  258 --------------------------EQGTPMWS----LLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWE  307 (464)
T ss_pred             --------------------------ccCccHHH----HHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcc
Confidence                                      12223444    556677777777666677777778888999888888866668


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH--HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhh
Q 011514          284 FADLMLIAGLAGTISQLLFMPLLAPILGEAKLL--SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQIS  361 (484)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  361 (484)
                      .|..+.-..+...++. -+.+.+.||++..+.+  ..+++...+.+...++.++...                       
T Consensus       308 ~G~~fLp~~~~y~ig~-~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~-----------------------  363 (464)
T KOG3764|consen  308 VGLAFLPASLSYAIGT-NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ-----------------------  363 (464)
T ss_pred             eeeeecccccchhccC-chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH-----------------------
Confidence            8888888888888998 5559999999954433  3344444444444444444322                       


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhhh----hhhHHHHHHhcccCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          362 VHVLLLKILKSIFMQVPYATTAFSVLVVF----ATPSFRSIVSKQVGPN---EQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                                     +++.....+++.+.    ..|... +..+....+   ..|.+.++......+|.++||.++|.+.
T Consensus       364 ---------------L~vp~~~l~~~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv  427 (464)
T KOG3764|consen  364 ---------------LWVPNFGLGFGIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLV  427 (464)
T ss_pred             ---------------HhhhhHHHHHHHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchhe
Confidence                           12222223333333    333333 222333223   6789999999999999999999999999


Q ss_pred             HhhhcCCC
Q 011514          435 ALFLSKGA  442 (484)
Q Consensus       435 ~~~~~~~~  442 (484)
                      +.. +.++
T Consensus       428 ~~i-GF~w  434 (464)
T KOG3764|consen  428 EAI-GFEW  434 (464)
T ss_pred             eeh-hHHH
Confidence            886 6554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.95  E-value=2.8e-24  Score=215.20  Aligned_cols=386  Identities=10%  Similarity=0.041  Sum_probs=248.9

Q ss_pred             CCCcchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cC
Q 011514            1 MGMEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YG   79 (484)
Q Consensus         1 m~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~G   79 (484)
                      |++++.+|.++.++...+...+++....+.++.|.++.+       +.+....+++.+.+.....+..++.|+++|| +|
T Consensus         7 ~~~~~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l-------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G   79 (489)
T PRK10207          7 MGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQL-------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLG   79 (489)
T ss_pred             cchhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccc
Confidence            444555788888888999999999999999999987654       3334455788888888888888899999999 99


Q ss_pred             chhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCcc--chhHHHHHHHHHHHhHH
Q 011514           80 RKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASF  157 (484)
Q Consensus        80 rk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~  157 (484)
                      |||.++.+.++..++.+.++++.+.  ...++++|+++|++. |...|...+++.|.+|++  +|++++++...+.++|.
T Consensus        80 ~r~~~~~g~~~~~~g~~~~~~~~~~--~~ll~~~~~l~~ig~-g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~  156 (489)
T PRK10207         80 TKRTIVLGAIVLAIGYFMTGMSLLK--PDLIFIALGTIAVGN-GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGS  156 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHhcc-ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHH
Confidence            9999999999999999999988762  123457899999755 777788999999999876  45778999999999999


Q ss_pred             hHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCC--C-C--CCCCCcccc---------cccccCCCC
Q 011514          158 VCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD--D-D--DLTRPIITE---------ETEGVNQNE  219 (484)
Q Consensus       158 ~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~--~-~--~~~~~~~~~---------~~~~~~~~~  219 (484)
                      .+||.+++.    +|||+.|++.++ ..+..++.+...++..++.+  . +  .|.++....         ......+..
T Consensus       157 ~~g~~l~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~  235 (489)
T PRK10207        157 LISLSLAPVIADKFGYSVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV  235 (489)
T ss_pred             HHHHHHHHHHHHhhChHHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            998888776    589999998764 44444444443443221111  0 0  010010000         000000000


Q ss_pred             CCCCcc------------CcccCCCCchHHHHHHhhccchhHHHHH--HHHHHhchhhhhHHHHHHHHhhhcCcCh----
Q 011514          220 SNSPVK------------IPVCKKIPSIRDLICLLRSSVTLSQAAV--VAFFSGLSEGGMQASFLYFLKAQFHFNK----  281 (484)
Q Consensus       220 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~----  281 (484)
                      +.....            ...+++. +      ...|+|.+....+  ...+++..+......++.|.++..+.+.    
T Consensus       236 ~~~~~~~~~~~~i~~~~f~~~~~~~-~------~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~  308 (489)
T PRK10207        236 EVANLVLIVLSIVVTIIFFREAFKL-D------KTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFS  308 (489)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcC-C------HHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceE
Confidence            000000            0000000 0      1223344333322  2344445555555677777775333221    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH-------HHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHh
Q 011514          282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAK-------LLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  354 (484)
                      ...+.+.+...+..++.. .+.+++.||+++|+       .+.+|+.+.+++++.+........                
T Consensus       309 i~~~~~~~~n~~~iii~~-pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~----------------  371 (489)
T PRK10207        309 INPVSFQALNPFWVVVAS-PILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFA----------------  371 (489)
T ss_pred             ECHHHHHhHhHHHHHHHH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhc----------------
Confidence            112445555556666676 44578999998886       366777777766654321100000                


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                      -.++..++|+            +.....+.+++.....|...+.+.+..|++.+|.++|+.+...++|+.+|..+.+..
T Consensus       372 ~~~~~~s~~~------------~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~  438 (489)
T PRK10207        372 DAQGLTSPWF------------IVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFT  438 (489)
T ss_pred             CCCCccCHHH------------HHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            0000111221            144555889999999999999999999999999999999999999999988877654

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.95  E-value=9.3e-24  Score=204.87  Aligned_cols=354  Identities=20%  Similarity=0.231  Sum_probs=259.1

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-chhHhHHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-RKAMLTLPLTLS   91 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-rk~~l~~~~~~~   91 (484)
                      +....|+..+..+...|.++.+.++.        +.+..++|.+.++..+..+++++++|.++||++ +||.+.+..++.
T Consensus         7 Ls~~~f~~f~~~G~~~p~~~~~L~~~--------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~   78 (400)
T PF03825_consen    7 LSLMYFLYFFAYGAFLPYLPLYLESR--------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLS   78 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHH
Confidence            45556777778889999999999876        566678899999999999999999999999986 577887888888


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHh-----hHh
Q 011514           92 IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLA-----ARF  166 (484)
Q Consensus        92 ~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l-----~~~  166 (484)
                      ++........++   ++.+++.-++..++. ....|...++..+..+  +++.-.|......++|.+++...     .+.
T Consensus        79 ~~~~~~~~~~~~---f~~~~~~~~l~~~~~-~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~  152 (400)
T PF03825_consen   79 ALALLLLAFSSS---FWWLFVIMLLFSFFF-SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGY  152 (400)
T ss_pred             HHHHHHHHHhcc---HHHHHHHHHHHHHHH-ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhh
Confidence            887777777788   666677776767544 5566788888888775  44555666777777777666432     222


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhh
Q 011514          167 LST---TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (484)
Q Consensus       167 l~~---~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (484)
                      .++   ...+++.+...++..... +.+|+.|+++++++                          ..+....++.++ +.
T Consensus       153 ~~~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~--------------------------~~~~~~~~~~~~-ll  204 (400)
T PF03825_consen  153 LGISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKE--------------------------SVKKLLGLDALK-LL  204 (400)
T ss_pred             hccccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCC--------------------------CcccccchHHHH-Hh
Confidence            222   245555554444433333 44787763332220                          001112223333 56


Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  323 (484)
                      |+|++....+..++.......++++.+.|+++.-|.+....+...+...+..++.. ...+++.+|+|.++++.++....
T Consensus       205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f-~~~~~~~~r~g~~~ll~~a~~~~  283 (400)
T PF03825_consen  205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF-FFSGRFLKRFGIKWLLLLALVAY  283 (400)
T ss_pred             cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHH
Confidence            77888888888899998999999999999999844777777877777666666665 77899999999999999999999


Q ss_pred             HHHHHHHhhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          324 CINMFICSISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       324 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ++-..+++... +.+..                      +++            ......+.|...+........++.+.
T Consensus       284 ~vR~~l~a~~~~~~~~~----------------------~~~------------~~l~q~lhG~tf~~~~~a~~~yi~~~  329 (400)
T PF03825_consen  284 AVRWLLYAYFSDPWPFI----------------------VAL------------QLLGQLLHGLTFGLFHAASVRYIDRI  329 (400)
T ss_pred             HHHHHHHHHhcCCcHHH----------------------HHH------------HHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            99999988873 33330                      000            01122357888899999999999999


Q ss_pred             cCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCCc
Q 011514          403 VGPNEQGKAQGCISGI-SSFANIVSPLIFSPLTALFLSKGAPF  444 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~-~~lg~~~gp~i~g~l~~~~~~~~~~~  444 (484)
                      +|++.|++++++++.. ..+|..+|..++|+++|+. +.+..+
T Consensus       330 ~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~-g~~~~~  371 (400)
T PF03825_consen  330 APPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAF-GARGMF  371 (400)
T ss_pred             CCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cchhhh
Confidence            9999999999998876 6799999999999999997 555433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.94  E-value=3e-23  Score=203.63  Aligned_cols=415  Identities=13%  Similarity=0.094  Sum_probs=279.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccCchhHh
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAML   84 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~l   84 (484)
                      .+..+....+-..++.....+.++.|.++.        +.+..+.+++..+..+..++.+|+.|.++|    |+||||.+
T Consensus         5 ~li~~~~~~~Giq~~~~l~~~~l~~yl~~l--------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~   76 (477)
T TIGR01301         5 KLLRVASVAAGVQFGWALQLSLLTPYVQEL--------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPF   76 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHH
Confidence            445556666666788889999999988765        455577899999999999999999999999    59999988


Q ss_pred             HH-HHHHHHHHHHHHHhccchhh--------------HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccch--hHHHH
Q 011514           85 TL-PLTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQR--ASAFG  147 (484)
Q Consensus        85 ~~-~~~~~~i~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r--~~~~~  147 (484)
                      +. +.....++..+++++++...              .+...++-.+..++. ....+...++++|.+|+++|  +.+++
T Consensus        77 il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~-n~~~~p~rALiaDl~p~~~~~~~~a~~  155 (477)
T TIGR01301        77 IAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVAN-NMLQGPCRAFLADLTGGDARRTRIANA  155 (477)
T ss_pred             HHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccccCchhHHHHHHHH
Confidence            76 46777777788888766210              012222222333233 44556789999999998765  57999


Q ss_pred             HHHHHHHhHHhHHHHhhHhh-------------------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcc
Q 011514          148 ILLGVLSASFVCGTLAARFL-------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPII  208 (484)
Q Consensus       148 ~~~~~~~~g~~ig~~l~~~l-------------------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~  208 (484)
                      +.+...++|.++|+.+++..                   +.|..|++.+++.++..+...+..||.+..++++.+.+   
T Consensus       156 ~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~---  232 (477)
T TIGR01301       156 YFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINS---  232 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhh---
Confidence            99999999999999988753                   34778999998888888888888999765332210000   


Q ss_pred             cccccccCCCCCCCCccCcccCCCCchHHHHHHhhc-cchhHHHHHHHHHHhchhhhhHHHHHHHHh-hhcCcChhh---
Q 011514          209 TEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS-SVTLSQAAVVAFFSGLSEGGMQASFLYFLK-AQFHFNKNQ---  283 (484)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~---  283 (484)
                           +.   +  +.   +..+....+++.++.+++ +|.++.+++..++.+++...+..+.+.|+. +.++-++.+   
T Consensus       233 -----~~---~--~~---~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       233 -----EA---A--PP---SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             -----hc---c--cc---cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhH
Confidence                 00   0  00   000111234555555443 577889999999999999988888887765 455543321   


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hHHHHHhHHHHHHHHHHHhhccchhh-HHHhhhhHHHHHHHHh
Q 011514          284 -------FADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSISWSAWV-IKIFFNKVFKLLLLSF  354 (484)
Q Consensus       284 -------~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f  354 (484)
                             -.+.....++...+.+ ++..++.+|+|+ |+....+.++.++++....+...... .+..+.+   .  .. 
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~s-~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~---~--~~-  372 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGITS-IGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGD---G--ES-  372 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhcccccccc---c--cc-
Confidence                   1233344445555555 566899999985 66768888888777777664432000 0000000   0  00 


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC--CchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP--NEQGKAQGCISGISSFANIVSPLIFSP  432 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~--~~~g~~~g~~~~~~~lg~~~gp~i~g~  432 (484)
                       ..+...+..           .++....+.|+..+..+..-++++++..|+  +..|..+|+.|.+..+.+.+.....|.
T Consensus       373 -~~~~~~~~~-----------~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~  440 (477)
T TIGR01301       373 -LPPPTGIKA-----------SALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGP  440 (477)
T ss_pred             -cCcchhhHH-----------HHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence             000000000           024555688899999999999999999995  566999999999999999999999999


Q ss_pred             HHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCC
Q 011514          433 LTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  473 (484)
Q Consensus       433 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (484)
                      +.+.. +.+...     .+.+.++..+++.+..+++-++++
T Consensus       441 ~~~~~-g~~~~~-----~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       441 WDQLF-GGGNLP-----AFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHHHc-CCCCee-----HHHHHHHHHHHHHHHHHHhCCCCC
Confidence            77776 433333     678888888888887777665554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.94  E-value=4.4e-26  Score=212.04  Aligned_cols=422  Identities=14%  Similarity=0.091  Sum_probs=283.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      .+.-++.|.+.++...+.++.|.+...+.+...+.-+.+.-..+.+..+..+|.+++++++|+++||+|||+++...+++
T Consensus        44 ~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liI  123 (538)
T KOG0252|consen   44 IIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELII  123 (538)
T ss_pred             HHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHH
Confidence            33345667888888888878777766654322222345666778999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccch----hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           91 SIIPLAILAYRRSI----SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        91 ~~i~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      ..+++++++++...    ...+++.+.|++.|++. |.-+|...+..+|...+++||...+...+..+.|.+.|..++-.
T Consensus       124 mIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGI-GGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I  202 (538)
T KOG0252|consen  124 MIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGI-GGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI  202 (538)
T ss_pred             HHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccc-cCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence            99999988876442    45689999999999877 77779999999999999999999999888888888877765533


Q ss_pred             -------------------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCccccccccc-C-CCCCCCCcc
Q 011514          167 -------------------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGV-N-QNESNSPVK  225 (484)
Q Consensus       167 -------------------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~  225 (484)
                                         .-||..+.+.++.+ +..+.....+||+++.+...++..+.-..+..+. . +.+++++..
T Consensus       203 v~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa-~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~~~~~~~~~~  281 (538)
T KOG0252|consen  203 VSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPA-LLVLYFRLKMPETARYTALVSKKLKQAAGDMKKVLSVDIEAESTAE  281 (538)
T ss_pred             HHHHHhccCCCCCCchHHHHHHHHHHHHHHHHH-HHHHHhhhcCCcchhHHHHhhcCHhhhhhccccccccccchhhccc
Confidence                               14999998888554 4445556679999876522111100000000000 0 000000111


Q ss_pred             CcccCCCCchHHHHHHhh--ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHH--------HHHHHHHHH
Q 011514          226 IPVCKKIPSIRDLICLLR--SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD--------LMLIAGLAG  295 (484)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~~~~~~~  295 (484)
                      .......++.+...+.+.  +-+.+.......|+...+++....+....++.. |+.+.+...        ...+....+
T Consensus       282 ~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~i-g~~~~~~~~~~~~~vA~~~~iia~~~  360 (538)
T KOG0252|consen  282 SDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAI-GVIPSANTYHELFKVAEGNLIIAVCS  360 (538)
T ss_pred             cCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhh-ccCCCcchHHHHHHHHHHHHHHHHHc
Confidence            111111112222222222  236677778888888888888777777766654 665544322        222333333


Q ss_pred             HHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhcc
Q 011514          296 TISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFM  375 (484)
Q Consensus       296 ~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  375 (484)
                      .+....+...++|++||+++.+.++.++.+..+.++...+...                                 ....
T Consensus       361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~---------------------------------~~~G  407 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLE---------------------------------NTIG  407 (538)
T ss_pred             cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccccc---------------------------------ccCc
Confidence            3322244567899999999999999999999888887765211                                 0000


Q ss_pred             chhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHH
Q 011514          376 QVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIG  455 (484)
Q Consensus       376 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~  455 (484)
                      ..+...+...++....+.....+.+|.+|.+.||+..|+....+..|+++|...++++.++-   ..+....+-.+++.+
T Consensus       408 f~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~---yp~~~g~~~v~~i~~  484 (538)
T KOG0252|consen  408 FVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHN---YPPNIGVRNVFIILA  484 (538)
T ss_pred             eeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhcc---CCccccchHHHHHHH
Confidence            01222223334455556666678889999999999999999999999999999999988852   122233444778888


Q ss_pred             HHHHHHHHHHHHhccC
Q 011514          456 LASMVAFIQSLMMSHT  471 (484)
Q Consensus       456 ~~~~~~~~~~~~~~~~  471 (484)
                      .+.+++.+..+.+++.
T Consensus       485 ~~~~~gi~~T~l~pEt  500 (538)
T KOG0252|consen  485 GCMLLGILFTLLIPET  500 (538)
T ss_pred             HHHHHhHheeEEeecc
Confidence            8888877777766643

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.94  E-value=7.4e-23  Score=202.26  Aligned_cols=354  Identities=14%  Similarity=0.129  Sum_probs=262.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh-HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHh
Q 011514           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML-TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCL  128 (484)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~  128 (484)
                      ....++..++..+...+..|+.|.++|+-|+||.+ .....+..+++.++.+.+.. .++...+.-++.-++. +.....
T Consensus        69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~-~~~~~~~l~iia~v~~-~~~~vf  146 (477)
T PF11700_consen   69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPG-QWWLALVLFIIANVGY-EASNVF  146 (477)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHH-HHHHHH
Confidence            34567889999999999999999999999876654 45556666677777765221 1333333333333322 444567


Q ss_pred             hhHHHhhcCCccch--------------------------hHHHHHHHHHHHhHHhHHHHhhHh------------hhhH
Q 011514          129 ALAYVADNISERQR--------------------------ASAFGILLGVLSASFVCGTLAARF------------LSTT  170 (484)
Q Consensus       129 ~~~~i~~~~~~~~r--------------------------~~~~~~~~~~~~~g~~ig~~l~~~------------l~~~  170 (484)
                      .++++.|..+++++                          ++..+.-.+...+|.++.-.+.-.            .+-|
T Consensus       147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r  226 (477)
T PF11700_consen  147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR  226 (477)
T ss_pred             HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence            89999999998888                          888888777777877665544322            1248


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHH
Q 011514          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQ  250 (484)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (484)
                      ..+.+.++..++..+...+++||.|+.++.+.                     .........++.++.++..++.|.+..
T Consensus       227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~---------------------~~~~~~~g~~~l~~t~k~~~~~~~~~~  285 (477)
T PF11700_consen  227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS---------------------GSSYLRFGFKRLWRTFKEIRKLRQLFL  285 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc---------------------chhHHHHHHHHHHHHHHHHHhChHHHH
Confidence            88889998888888888888998876322210                     000001112244555667788899999


Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch--HHHHHhHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA--KLLSLGLFAACINMF  328 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~--~~~~~~~~~~~~~~~  328 (484)
                      .++..+++.-+......+...|.++.+|++..+...+.....+.++++. ++.+++.||+|.|  +++..+.....+..+
T Consensus       286 fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga-~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~  364 (477)
T PF11700_consen  286 FLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGA-LLFGWLQDRFGPKTKRTLLISLILWIIIPL  364 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 7779999999998  777777666533333


Q ss_pred             HHhh--------ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          329 ICSI--------SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       329 ~~~~--------~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      .-.+        ..+.+.                                      ..+...+.|+..+...+..+++.+
T Consensus       365 ~g~~G~~~~~~g~~~~~~--------------------------------------f~~~a~~~G~~~G~~qs~sRs~~~  406 (477)
T PF11700_consen  365 YGLFGFWPSFFGLKSPWE--------------------------------------FWVLAVLIGLFMGGIQSASRSLFS  406 (477)
T ss_pred             HHHHHhhhcccCcccHHH--------------------------------------HHHHHHHHHHHhhhHHHHHHHHHH
Confidence            2222        233333                                      245566889999999999999999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      +..|+++.++.+|++...+...+.+||.+.|.+.+.+++.+.       .+....++.++++++..+.+.++
T Consensus       407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~-------g~~~l~~lf~~gl~ll~~v~~~~  471 (477)
T PF11700_consen  407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRY-------GFLFLLVLFLIGLILLFFVDVEK  471 (477)
T ss_pred             HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh-------HHHHHHHHHHHHHHHHhhccchh
Confidence            999999999999999999999999999999999999855555       34555566666666666555444

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.93  E-value=4.6e-24  Score=216.31  Aligned_cols=352  Identities=17%  Similarity=0.129  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhh
Q 011514           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLAL  130 (484)
Q Consensus        51 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~  130 (484)
                      .+.+++.+...++..+++++.|+++|++|||+.++++.+.+.++.+++++++|   +++++++|++.|++. |.......
T Consensus        89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~---~~~l~~GR~l~G~g~-G~~~~~~p  164 (513)
T KOG0254|consen   89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS---WYQLIVGRILTGLGV-GGASVLAP  164 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhccch-hhhhhcch
Confidence            35689999999999999999999999999999999999999999999999999   999999999999866 66667899


Q ss_pred             HHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 011514          131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTR  205 (484)
Q Consensus       131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~  205 (484)
                      .|++|..|++.||...+..+....+|..+|..++...     +||.++.+..+.+++..+. .+++||+|++..++++.+
T Consensus       165 iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~  243 (513)
T KOG0254|consen  165 VYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLE  243 (513)
T ss_pred             hhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChH
Confidence            9999999999999999999999999999997777665     7999999988777777666 778999998765543333


Q ss_pred             CcccccccccCCCCCCCCc-----c-----CcccCCCC-chHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHh
Q 011514          206 PIITEETEGVNQNESNSPV-----K-----IPVCKKIP-SIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK  274 (484)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (484)
                      ++......-....+++...     .     +......+ ..++.++...+++......+..+....+......+.+.+++
T Consensus       244 ~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~  323 (513)
T KOG0254|consen  244 EAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFK  323 (513)
T ss_pred             HHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHH
Confidence            3322211111100000000     0     00000001 12222221111223333444444444444556666677666


Q ss_pred             hhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHh
Q 011514          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  354 (484)
                      .. |.+... .......+....++. +++..+.||+|||+.++.+...+.++.++++........               
T Consensus       324 ~~-g~~~~~-~~~~~~~~~v~~~~t-~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~---------------  385 (513)
T KOG0254|consen  324 SA-GLKSDT-FLASIILGVVNFLGT-LVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALY---------------  385 (513)
T ss_pred             hc-CCCCch-HHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhcc---------------
Confidence            65 666443 334444555555665 665899999999999999999999988877654322110               


Q ss_pred             hhh-hhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          355 ITR-KQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       355 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                       +. .........          +...+...........|..+.+.+|.+|.+.|+++.++...++...+.+-......+
T Consensus       386 -~~~~~~~~~~~~----------~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~  454 (513)
T KOG0254|consen  386 -YPNSSKGAGWLA----------IVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFI  454 (513)
T ss_pred             -CCCcccchhHHH----------HHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence             00 000000000          022222333344445666778889999999999999999999998887766655555


Q ss_pred             HHh
Q 011514          434 TAL  436 (484)
Q Consensus       434 ~~~  436 (484)
                      .+.
T Consensus       455 ~~~  457 (513)
T KOG0254|consen  455 TEA  457 (513)
T ss_pred             HHh
Confidence            544

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.93  E-value=1.4e-22  Score=192.79  Aligned_cols=386  Identities=15%  Similarity=0.126  Sum_probs=260.3

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      .++++.+.+....++..+..+...|.+|..+++..       +++.+++|.+.++..+..++.+|+.|.++||.|.||-+
T Consensus         4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~-------GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L   76 (412)
T PF01306_consen    4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVA-------GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL   76 (412)
T ss_dssp             CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-------CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH
Confidence            34667788888888888999999999999998643       77888999999999999999999999999999976654


Q ss_pred             HHHHH--H-HHHHHHHHHhccch--hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhH
Q 011514           85 TLPLT--L-SIIPLAILAYRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC  159 (484)
Q Consensus        85 ~~~~~--~-~~i~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i  159 (484)
                      +....  . .........+.+-.  +.+...+++-+..|+.. ....|+..+++.+..  ++.+.-.|-.....++|.++
T Consensus        77 l~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f-~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai  153 (412)
T PF01306_consen   77 LWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVF-NAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAI  153 (412)
T ss_dssp             HHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTT-TTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHH
Confidence            43322  2 22223332332210  11223333344445433 333467777777765  45566778888899999999


Q ss_pred             HHHhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchH
Q 011514          160 GTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIR  236 (484)
Q Consensus       160 g~~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (484)
                      +..++|.+   +-+..||+.....++..++..+..|+.+++.+..+                      ....+++..+.+
T Consensus       154 ~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~  211 (412)
T PF01306_consen  154 ASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD----------------------ALGAKKDKVSLK  211 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SST----------------------TSSS------HH
T ss_pred             HHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc----------------------ccccCCCCCcHH
Confidence            99998874   34667887765555555444443344333222110                      001112222455


Q ss_pred             HHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch
Q 011514          237 DLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA  313 (484)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~  313 (484)
                      +..+ +.|+|++|.+.+........+..+....+.|.+..+   +.+....|++.+...+...+.. .+.+++.+|+|.|
T Consensus       212 ~~~~-l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m-~~~p~li~rig~k  289 (412)
T PF01306_consen  212 DVLS-LFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMM-FFSPWLINRIGAK  289 (412)
T ss_dssp             HHHH-HTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HH
T ss_pred             HHHH-HhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHH-HHHHHHHHhcChH
Confidence            5443 567789988887777766677777766777776653   3344557888887777777776 7789999999999


Q ss_pred             HHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          314 KLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      +.++++..++.+-....++.++.+.                                      +...-.+.++-.+....
T Consensus       290 ~~Lllag~i~~iRi~~~~~~~~~~~--------------------------------------i~~~klLH~~e~~l~lv  331 (412)
T PF01306_consen  290 NLLLLAGVIMAIRIIGSGFATNPWV--------------------------------------ISLIKLLHALEFPLLLV  331 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHT--SHHH--------------------------------------HHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhcchHH--------------------------------------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998887                                      24455577888888888


Q ss_pred             HHHHHHhcccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      ...-++++..|++..++.+.+. +...+++..+.+.+.|.++|+. |.+.       .|.+.+.+.+...+...+..+
T Consensus       332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~-G~~~-------tylimg~iv~~~~li~~f~l~  401 (412)
T PF01306_consen  332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRI-GFQH-------TYLIMGLIVLPFTLISAFTLK  401 (412)
T ss_dssp             HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhc-CcHH-------HHHHHHHHHHHHHHHheeeec
Confidence            8889999999999999999885 6888999999999999999998 5443       445655555554444444333

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.2e-23  Score=209.10  Aligned_cols=363  Identities=16%  Similarity=0.155  Sum_probs=268.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHH-HHHHhhhhccchhhHhh
Q 011514           51 YLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYA-LRTLTAMVCEGSINCLA  129 (484)
Q Consensus        51 ~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~-~r~l~G~~~~g~~~~~~  129 (484)
                      .+++|+.++......+.+|+.+.+.||+|.|++.+.|.++..++.++..++++   +|.+++ .-++.|++. +......
T Consensus        81 ~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~---i~~l~lt~gvi~G~G~-~~~~~pa  156 (509)
T KOG2504|consen   81 SQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATS---LWQLYLTFGVIGGLGL-GLIYLPA  156 (509)
T ss_pred             cHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHhhccc-hhhhcch
Confidence            34689999999999999999999999999999999999999999999999999   666555 456777655 6665567


Q ss_pred             hHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC-CC
Q 011514          130 LAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD-LT  204 (484)
Q Consensus       130 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~-~~  204 (484)
                      ...+..++ +++|+.+.|+...+.++|.++-|.+...    .|||+.+++.+.+.+-........-|.+++.++.+. +.
T Consensus       157 iviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~  235 (509)
T KOG2504|consen  157 VVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPNEEKDL  235 (509)
T ss_pred             hhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCchhhhhh
Confidence            77777666 5899999999999999998877766654    599999999888876666666665554433322100 00


Q ss_pred             CC------------cccccccccCCCC---CCCCc--cCcccCCCCchHHHH----HHhhccchhHHHHHHHHHHhchhh
Q 011514          205 RP------------IITEETEGVNQNE---SNSPV--KIPVCKKIPSIRDLI----CLLRSSVTLSQAAVVAFFSGLSEG  263 (484)
Q Consensus       205 ~~------------~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  263 (484)
                      +.            ......+.....+   .+.+.  +.+.+....+.+...    ..+.++|.++...+...+...++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~  315 (509)
T KOG2504|consen  236 RNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFN  315 (509)
T ss_pred             ccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHH
Confidence            00            0000000000000   00000  000000000111111    235677899999999999999999


Q ss_pred             hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chHHHHHhHHHHHHHHHHHhhccchhhHHH
Q 011514          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFICSISWSAWVIKI  341 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (484)
                      ....++|.|..+ .|++..+.+.++++.++..+++. ++.|++.|+..  ++....++.+..+++....++.++.+.   
T Consensus       316 ~p~~~l~~~~~~-~g~~~~~aa~l~Siigi~~i~gR-i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~---  390 (509)
T KOG2504|consen  316 VPFVYLPSYAKS-LGLSSNDAAFLLSIIGVSDIIGR-IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVG---  390 (509)
T ss_pred             HHHHHHHHHHhh-cCCChhhhHHHHHHHHHhhhhhh-hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHH---
Confidence            999999999995 49999999999999999999999 66699999876  455667777777777777777777665   


Q ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 011514          342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF  421 (484)
Q Consensus       342 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l  421 (484)
                                                         +.....++|+..+.........+.+.++.++-..++|+...++.+
T Consensus       391 -----------------------------------l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi  435 (509)
T KOG2504|consen  391 -----------------------------------LIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGI  435 (509)
T ss_pred             -----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHH
Confidence                                               356666888888888887778999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHH
Q 011514          422 ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLAS  458 (484)
Q Consensus       422 g~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  458 (484)
                      +..+||++.|.+.|.++++...++..+....+.+.+.
T Consensus       436 ~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  436 GALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             HHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            9999999999999998778887766665555444333

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.93  E-value=7e-24  Score=208.41  Aligned_cols=276  Identities=16%  Similarity=0.054  Sum_probs=211.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccc
Q 011514           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (484)
Q Consensus        44 ~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (484)
                      +|.+....+.|.+.+++.++++++.++.|.+.||++-.+.+....+..++-.++....+|   ++.+++.|++.|++- +
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s---~~~~ialr~llGl~e-s  149 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS---FPGLIALRFLLGLFE-S  149 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHh-c
Confidence            344556667899999999999999999999999999888888888888888877777888   899999999999865 6


Q ss_pred             hhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----------hhhHHHHHHHHHHHHHHHHHHHHHccc
Q 011514          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKD  193 (484)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----------l~~~~~f~~~~~~~~i~~~~~~~~lpe  193 (484)
                      ...|....+++.|+.+++|+..++++.+..++|.++|++++..          .|||+.|++.+++.++..+++++++|+
T Consensus       150 ~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  150 GGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             ccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence            6779999999999999999999999999999999999988754          389999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHH
Q 011514          194 DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFL  273 (484)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (484)
                      .|.+..-.+++++....++.+.++.      ... .++ .+.+ .++...++|.+|...++.++.....+++.+++|.|+
T Consensus       230 ~P~~~~fl~~~ek~~~~~~~~~~~~------~~~-~~~-~~~~-~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l  300 (495)
T KOG2533|consen  230 NPSKAWFLTDEEKELVVERLRESPS------GGI-ENK-FKWK-GFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYL  300 (495)
T ss_pred             ChhhccccchHHHHHHHHHHHhccC------CCc-ccc-cCHH-HHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            9875422111100000000000000      000 000 1222 233466789999999999999999999999999999


Q ss_pred             hhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchHHHHHhHHH-HHHHHHHHhhc
Q 011514          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAKLLSLGLFA-ACINMFICSIS  333 (484)
Q Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~~~~~~~~~~-~~~~~~~~~~~  333 (484)
                      ++..|++..+...+.....++++++. ++++.++||    ..+|........+ ..++...+...
T Consensus       301 ~~~~~~s~~~a~~ls~~~~~~g~v~~-i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~  364 (495)
T KOG2533|consen  301 KSNGGYSELQANLLSTPYDVGGIVGL-ILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA  364 (495)
T ss_pred             HcCCCcChHHhccccchHHhhhHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99667999999999999999999998 777999999    4445444444433 33443444333

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.93  E-value=2.2e-22  Score=202.21  Aligned_cols=355  Identities=11%  Similarity=0.059  Sum_probs=246.2

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccCc-hhHhHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGR-KAMLTLP   87 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Gr-k~~l~~~   87 (484)
                      .-++.+...+..+...+.++.|.++..       ++++...|.+..+..+..++..|++|.++|    |+|| |+.++.+
T Consensus        11 yg~g~~~~~~~~~~~~~~l~~yyt~v~-------Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g   83 (473)
T PRK10429         11 YGFGAFGKDFAIGIVYMYLMYYYTDVV-------GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG   83 (473)
T ss_pred             hccchhHHhHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh
Confidence            345556667777778888888887654       677788999999999999999999999999    5698 5566678


Q ss_pred             HHHHHHHHHHHHhccch---hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcC-CccchhHHHHHHHHHHHhHHhHHHHh
Q 011514           88 LTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      ....+++..++...++.   ..++.+++..++.+++. ........++.+|.+ +++||.+..++.....++|..+++.+
T Consensus        84 ~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~-t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~  162 (473)
T PRK10429         84 TLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTY-TIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGF  162 (473)
T ss_pred             hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH-HHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888887666554422   12344555555656544 445556888999999 58999999998777777765554433


Q ss_pred             hHh-----------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCC
Q 011514          164 ARF-----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (484)
Q Consensus       164 ~~~-----------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (484)
                      ...           .+|+....+.+++..+..+..++..||.++.++.+                         ..++++
T Consensus       163 ~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------~~~~~~  217 (473)
T PRK10429        163 TLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------SAEGSH  217 (473)
T ss_pred             HHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc-------------------------cccccC
Confidence            221           24555555666555555555555566643221110                         001122


Q ss_pred             CchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011514          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (484)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  312 (484)
                      .+.++.++.+++||.++..+...++..........+.++|.+...+ ++...+.+....++..+++. ++.+++.||+|+
T Consensus       218 ~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk  295 (473)
T PRK10429        218 LTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSYAGAANLVTL-ILFPRLVKSLSR  295 (473)
T ss_pred             CCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCc
Confidence            3577777778889999888888888877777777777767666544 55566777776667777887 666999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHhh---ccc--hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHh
Q 011514          313 AKLLSLGLFAACINMFICSI---SWS--AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVL  387 (484)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  387 (484)
                      |+.+..+..+..++.+.+..   ...  .+.                                      ..+...+.+++
T Consensus       296 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~i~~~l~g~~  337 (473)
T PRK10429        296 RILWAGASIFPVLSCGVLLLMGLAAPHNALL--------------------------------------IVIAGILLNIG  337 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCchhHHH--------------------------------------HHHHHHHHHHH
Confidence            99988777765555444332   111  111                                      13344467777


Q ss_pred             hhhhhhHHHHHHhcccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          388 VVFATPSFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       388 ~~~~~~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      .+...+...++++|.++       .+..|..+|..+....++..+++.+.|.+.+.. +++
T Consensus       338 ~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~-Gy~  397 (473)
T PRK10429        338 TALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI-GYV  397 (473)
T ss_pred             HHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            88888888888998866       344566999999999999999999999999876 553

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.92  E-value=4.9e-29  Score=249.87  Aligned_cols=410  Identities=16%  Similarity=0.174  Sum_probs=255.7

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhC---CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHH
Q 011514           15 VTVFLWGFATMMVVPAITDVTMMALC---PGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLS   91 (484)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~---~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~   91 (484)
                      ++.+..+++.....+..+.......+   ...++.+.+..+.++..+...++..+++++.|.++||+|||+.+..+.++.
T Consensus         7 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~   86 (451)
T PF00083_consen    7 LGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLM   86 (451)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            34467777777666555544422211   111112224567799999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcc---chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh--
Q 011514           92 IIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--  166 (484)
Q Consensus        92 ~i~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~--  166 (484)
                      .++.++.++++   +   ++.+.++|++.|++. |...+....++.|..|+++|++..++.+....+|.+++..++..  
T Consensus        87 ~i~~~~~~~~~~~~~---~~~~~~~R~~~G~~~-g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~  162 (451)
T PF00083_consen   87 IIGSILIAFAPSYNN---FWMLLIGRFLIGFGI-GGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS  162 (451)
T ss_pred             ccccccccccccccc---ccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999   7   899999999999866 66667999999999999999999999999999998888776543  


Q ss_pred             --h---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCC---CCCCcc---CcccCCCCch
Q 011514          167 --L---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE---SNSPVK---IPVCKKIPSI  235 (484)
Q Consensus       167 --l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~  235 (484)
                        .   +||..+...++..++..+ ...++||+|++...+++.+++.+...+..+++.   +.++..   ++.++++.+.
T Consensus       163 ~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (451)
T PF00083_consen  163 YYSDNWGWRILLIFGAIPSLLVLL-LRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASW  241 (451)
T ss_pred             cccccccccccccccccccccccc-cccccccccceecccccccccccccccccccccccccccccccccccccccceee
Confidence              2   399999888877665544 446799999987666655555544333111111   111111   1111111223


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHhchh-hhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Q 011514          236 RDLICLLRSSVTLSQAAVVAFFSGLSE-GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (484)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  314 (484)
                      ++.++....++++...........+.. .....+.+...+ ..|.+..  -......++...++. +.+.++.||+|||+
T Consensus       242 ~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~GRr~  317 (451)
T PF00083_consen  242 RDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFE-NAGISNS--FLATLILGLVNFLGT-LLAIFLIDRFGRRK  317 (451)
T ss_pred             eecccccccccccccccccccccccccccccccccccccc-ccccccc--ccccccccccccccc-cccccccccccccc
Confidence            332211110122222222222222222 223333444443 3466655  112223333344444 55568999999999


Q ss_pred             HHHHhHHHHHHHHHHHh--h--ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHH-Hhhh
Q 011514          315 LLSLGLFAACINMFICS--I--SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFS-VLVV  389 (484)
Q Consensus       315 ~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~  389 (484)
                      ++..+....+++.+.+.  .  ..+...                    ....           .  ......+.. ....
T Consensus       318 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~-----------~--~i~~~~l~~~~~~~  364 (451)
T PF00083_consen  318 LLIIGLLLMAICSLILGIIFFLGVSSSS--------------------WWSI-----------L--SIVFLALFFAFFSL  364 (451)
T ss_pred             cccccccccccccccccccccccccccc--------------------cccc-----------c--cceeeeeccccccc
Confidence            99888888777766664  1  111100                    0000           0  011111222 2222


Q ss_pred             hhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          390 FATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       390 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      ...+..+.+..|.+|++.|+++.|+....+.+++.++|.+...+.+.. +...       .+.+.+.+.++..+..+...
T Consensus       365 g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~-~~~~-------~~~i~~~~~~i~~i~~~~~l  436 (451)
T PF00083_consen  365 GWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNL-GGWG-------VFLIFAGVCLIAIIFVYFFL  436 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-cccc-------cchhhHHHHHHHHhheeEEE
Confidence            445667788899999999999999999999999999999988887765 3122       23444444444444444444


Q ss_pred             cCCCC
Q 011514          470 HTPAS  474 (484)
Q Consensus       470 ~~~~~  474 (484)
                      +|++.
T Consensus       437 pET~g  441 (451)
T PF00083_consen  437 PETKG  441 (451)
T ss_pred             eeCCC
Confidence            44443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.1e-21  Score=178.46  Aligned_cols=344  Identities=16%  Similarity=0.147  Sum_probs=268.5

Q ss_pred             HHHHHHHHHHHHHH----HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514           11 SHLFVTVFLWGFAT----MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus        11 ~~l~~~~~~~~~~~----~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +.+..+..+..++.    ..+.|.++.+.+|.        +.+....|+++++..+...+.+|...+++.|+|.++.+..
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~--------gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~   82 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDL--------GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFL   82 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHh--------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHH
Confidence            34444444444443    45667777776555        7788889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh--
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA--  164 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~--  164 (484)
                      ++++.+++.++-... +   .+.++.+-.+.|.+. +..+....+.+-+.+| ++-+..++++....++|..+++.+.  
T Consensus        83 ~Llli~~G~~iR~~~-~---~~~L~~gt~l~G~gI-av~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavp  156 (395)
T COG2807          83 ALLLIAAGILIRSLG-G---LPLLFLGTLLAGAGI-AVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVP  156 (395)
T ss_pred             HHHHHHHHHHHHhcc-c---HHHHHHHHHHHHhhH-HHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhH
Confidence            999999999998887 4   578889999999654 7777788999999997 6779999999999999888776554  


Q ss_pred             --Hhh-hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHH
Q 011514          165 --RFL-STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (484)
Q Consensus       165 --~~l-~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (484)
                        ... +||.....-+..+++.++.   ++|...+++..+                          ...+..+..+    
T Consensus       157 la~~~~gW~~aL~~WAl~allAl~~---WlPq~~r~~~~~--------------------------~~~~~~~~~~----  203 (395)
T COG2807         157 LAQHSGGWRGALGFWALLALLALLI---WLPQALREQAAS--------------------------IATKLVSVRK----  203 (395)
T ss_pred             HHHhhccHHHHHHHHHHHHHHHHHH---Hhhhcccccccc--------------------------cccccccccc----
Confidence              333 7999888877666655443   345532221111                          0001111112    


Q ss_pred             hhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-chHHHHHhH
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-EAKLLSLGL  320 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-~~~~~~~~~  320 (484)
                      ++++|.-|.+.+...+.++.++....|+|.++.|. |+|+.+.|.+.+...+.....+ +..+.+.+|.+ +|+......
T Consensus       204 vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~-ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         204 VWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTA-LLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             cccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHH-HHHHHHHHHhcccchHHHHHH
Confidence            56789999999999999999999999999999998 9999999999999999999999 77799999765 466666677


Q ss_pred             HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          321 FAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      .++.++.+.+.+.+....                                       ...++++|.+.+..+|...+.+.
T Consensus       282 ~~~l~G~~G~~~~P~~~~---------------------------------------~lw~~llG~G~G~~F~laL~li~  322 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLP---------------------------------------ILWALLLGLGQGGAFPLALTLIL  322 (395)
T ss_pred             HHHHHHHHHHHHhhhhHH---------------------------------------HHHHHHHhCccchHHHHHHHHHH
Confidence            777788777766655443                                       22256899999999999888888


Q ss_pred             cccC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          401 KQVG-PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       401 ~~~p-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +..+ +++.++-.|+.+.++++-..+||.+.|++.|.+++...
T Consensus       323 ~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~  365 (395)
T COG2807         323 LRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSA  365 (395)
T ss_pred             hhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHH
Confidence            7765 45677889999999999999999999999999866655

>PRK09669 putative symporter YagG; Provisional

Probab=99.92  E-value=1e-21  Score=196.13  Aligned_cols=347  Identities=12%  Similarity=0.037  Sum_probs=233.3

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCchh-HhHHHHHH
Q 011514           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLPLTL   90 (484)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~-~l~~~~~~   90 (484)
                      +.+............++.+.++..       +++....|.+.++..+...+..|+.|.++||    +|||| .++.+.+.
T Consensus        17 g~~~~~~~~~~~~~~l~~~~t~~~-------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~   89 (444)
T PRK09669         17 GDTACNLVWQTVMLFLAYFYTDVF-------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIP   89 (444)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHH
Confidence            333334334444555666665543       7788899999999999999999999999998    78754 55577777


Q ss_pred             HHHHHHHHHhccch---hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcC-CccchhHHHHHHHHHHHhHHhHHHHhhH-
Q 011514           91 SIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNI-SERQRASAFGILLGVLSASFVCGTLAAR-  165 (484)
Q Consensus        91 ~~i~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~g~~ig~~l~~-  165 (484)
                      .+++..+....++.   ...+.+++..++.+.+. ........++.+|+. ++++|++..++......+|..+++.+.. 
T Consensus        90 ~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~-t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~p  168 (444)
T PRK09669         90 FGVVCLLTFYTPDFGATGKIIYACVTYILLSLVY-TAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALP  168 (444)
T ss_pred             HHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666555542   22345556666666544 344445778999998 4688999989888888888777664332 


Q ss_pred             ---h-------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCch
Q 011514          166 ---F-------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSI  235 (484)
Q Consensus       166 ---~-------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (484)
                         .       .+|+..+.+.+++..+..+..++..+|.++++++                              ++.+.
T Consensus       169 l~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~~~------------------------------~~~~~  218 (444)
T PRK09669        169 LVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPEVD------------------------------NSSSV  218 (444)
T ss_pred             HHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCCCc------------------------------CCCCH
Confidence               1       2577777777766666665555555553221100                              11234


Q ss_pred             HHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          236 RDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      ++.++...+||.++......++............++|.++..+. ++..+.+.....+..+++. ++.+++.||+|+|+.
T Consensus       219 ~~~~~~~~~n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~i~~ii~~-~~~~~l~~r~gk~~~  296 (444)
T PRK09669        219 WKDLKLLLGNSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLLR-PDLATLFLVTGMIAGLFGA-LLSERLLGKFDRVRA  296 (444)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhhheeeeeecCC-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHH
Confidence            55566678889988888777776666655555556665555443 3333444444445555555 666899999999999


Q ss_pred             HHHhHHHHHHHHHHHhhc-c-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          316 LSLGLFAACINMFICSIS-W-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      ...+..+..+....+.+. . +.+.                                      +.....+.+++.+...+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~i~g~~~~~~~~  338 (444)
T PRK09669        297 FKWTIVAFVILSALIFFIPPSNVWL--------------------------------------IFALNILFNFIQNLTTP  338 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhCcchHHH--------------------------------------HHHHHHHHHHHHHHHHH
Confidence            887776655433322222 2 2222                                      13444577888888889


Q ss_pred             HHHHHHhcccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          394 SFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       394 ~~~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      ..+++++|..+       ++..|..+|..+....+|..+|+.+.|.+.+.. +++
T Consensus       339 ~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~-Gy~  392 (444)
T PRK09669        339 LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWV-DYV  392 (444)
T ss_pred             HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            99999998875       234567889999999999999999999999986 664

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.92  E-value=1.6e-22  Score=187.87  Aligned_cols=376  Identities=13%  Similarity=0.088  Sum_probs=280.8

Q ss_pred             hhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhH-hHHHHHHHHHHHHHHHhccch
Q 011514           26 MVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAM-LTLPLTLSIIPLAILAYRRSI  104 (484)
Q Consensus        26 ~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~-l~~~~~~~~i~~~~~~~~~~~  104 (484)
                      ....++|.|.++....+..+...+....|...++..+...+.+|+.|.++|+.|+||. +-....+..++..+..+.++.
T Consensus        33 vtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~  112 (438)
T COG2270          33 VTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG  112 (438)
T ss_pred             eeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC
Confidence            4456778888777543333434455577999999999999999999999999997655 446666777777777777663


Q ss_pred             hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh------H-------------
Q 011514          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA------R-------------  165 (484)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~------~-------------  165 (484)
                      ..++..++.-.+..++. .......++++.|..++++-++..+.-.....+|..+--...      +             
T Consensus       113 s~~~~~l~~~il~~i~~-~~s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~  191 (438)
T COG2270         113 SYLLLLLLFLILASIGF-EFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLP  191 (438)
T ss_pred             chHHHHHHHHHHHHHhc-chhheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccC
Confidence            33566666677777655 444567999999999988877776655555555544332221      1             


Q ss_pred             ---hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHh
Q 011514          166 ---FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL  242 (484)
Q Consensus       166 ---~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (484)
                         ...-|..+.+.++..++..+..++..||.++.....                       .+...+..+++++.++..
T Consensus       192 ~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~-----------------------~~~l~~g~k~L~~t~k~i  248 (438)
T COG2270         192 PADGEDVRITGLLAALWWLLFALPMILNVHDAEKISSPP-----------------------PTALRNGFKELKSTFKEI  248 (438)
T ss_pred             ccccccchhHHHHHHHHHHHHHhHHHhcccccccccccc-----------------------hHHHHHHHHHHHHHHHHH
Confidence               012378888888888888888887777766432110                       001111223455667778


Q ss_pred             hccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      ++++.+...++..+++.-+.....++...|....+|++..+...+.....+.+++++ ++.|++.||+|.|+++..++.+
T Consensus       249 ~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~-ii~g~Ld~rfg~k~vl~~~lvi  327 (438)
T COG2270         249 RGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGA-IIAGFLDERFGSKPVLMIGLVI  327 (438)
T ss_pred             hcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCceeehHHHHH
Confidence            889999999999999999999999999999998999999999999999999999999 7779999999999999888888


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ..+.++...+......                                      ......+.|.+.+......+++..+.
T Consensus       328 ~~~~~~~~~~~~~~~~--------------------------------------f~i~gll~g~s~G~~qA~SRSy~~~l  369 (438)
T COG2270         328 LSIAALYLIFLEGELD--------------------------------------FWILGLLVGTSLGGAQASSRSYLARL  369 (438)
T ss_pred             HHHHHHHHHHccccHH--------------------------------------HHHHHHHHHHhcchHHHHHHHHHHHh
Confidence            7777666666555444                                      25556689999999999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      +|+++.++.+|+++..+..++.+||...+.+.+.+++.+.       .+....++..++.....+.+.+
T Consensus       370 vp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~-------g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         370 VPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRA-------GVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             CCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhh-------HHHHHHHHHHhhHhhEEeecCC
Confidence            9999999999999999999999999999999999865554       2344545555555554444444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.92  E-value=1.6e-21  Score=196.46  Aligned_cols=380  Identities=11%  Similarity=0.022  Sum_probs=226.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCchhHhH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~   85 (484)
                      +|.++.++...+...++.....+.++.+.++.+       +.+....+++.+.+........+++|+++|| +|||+.+.
T Consensus        20 p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~l-------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~   92 (500)
T PRK09584         20 PKAFYLIFSIELWERFGYYGLQGIMAVYLVKQL-------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIM   92 (500)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Confidence            456788888889999999888899999986654       3333445666666665555666789999999 59999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccc--hhHHHHHHHHHHHhHHhHHHHh
Q 011514           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      .+.++.+++..+++++++.  .+.+.+.|+++|++. |...|...+++.|++|+++  |++++++...+.++|..+||.+
T Consensus        93 ~g~~~~~ig~~l~~~~~~~--~~~l~~~~~l~gig~-g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i  169 (500)
T PRK09584         93 LGAIVLAIGYALVAWSGHD--AGIVYMGMATIAVGN-GLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLA  169 (500)
T ss_pred             HHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhh-hcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHH
Confidence            9999999999999887531  456678899999755 6666788899999998543  4568888899999999999988


Q ss_pred             hHh----hhhHHHHHHHHHHHHHHH---HHHHHHcccCCCCCCCC-CCCCCcccc--------cccccCCCCCCCCccCc
Q 011514          164 ARF----LSTTSAFQAATIVSMLAA---AYMRVFLKDDVPNDDDD-DLTRPIITE--------ETEGVNQNESNSPVKIP  227 (484)
Q Consensus       164 ~~~----l~~~~~f~~~~~~~~i~~---~~~~~~lpe~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~  227 (484)
                      ++.    .|||+.|.+.++...+..   +.....++|.++..+++ .|..+....        ........+.  +....
T Consensus       170 ~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  247 (500)
T PRK09584        170 TPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVVALIAIATWLLHNQ--EIARM  247 (500)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHHHHHHHHHHHHhcc--hHHHH
Confidence            876    489999998875444433   23333444432211111 011000000        0000000000  00000


Q ss_pred             ccCC------CCchHHHH--HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHh----hh-----cCcChhhHHHHHHH
Q 011514          228 VCKK------IPSIRDLI--CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK----AQ-----FHFNKNQFADLMLI  290 (484)
Q Consensus       228 ~~~~------~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~g~~~~~~~~~~~~  290 (484)
                      ....      ....++..  +...+ ++.+..+. .++....+.......+.++.    +.     .|+. ...+++.+.
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~-i~~~~~~s~  324 (500)
T PRK09584        248 ALGVVALGIVVIFGKEAFAMKGAAR-RKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIA-VEPEQYQAL  324 (500)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCHHHH-HHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccccccceE-ECHHHHHHH
Confidence            0000      00000000  00111 22222221 12222223333333333322    21     1211 124566666


Q ss_pred             HHHHHHHHHHHH---HHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHH
Q 011514          291 AGLAGTISQLLF---MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLL  367 (484)
Q Consensus       291 ~~~~~~~~~~~~---~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  367 (484)
                      .++..++..++.   .+++.||.+..+.+.+++.+.+++++.+........                 .++.++.|+   
T Consensus       325 n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~-----------------~~~~vs~~~---  384 (500)
T PRK09584        325 NPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAN-----------------DAGIVSVNW---  384 (500)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC-----------------CCCccCHHH---
Confidence            666666665332   245555666667888899999998888765533110                 000111111   


Q ss_pred             HHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011514          368 KILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIF  430 (484)
Q Consensus       368 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~  430 (484)
                               ......+.+++.....|...+++.+..|++.||+++|.......+|+.++..+.
T Consensus       385 ---------~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        385 ---------LIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             ---------HHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     255666889999999999999999999999999999977666665555554444

>PRK09848 glucuronide transporter; Provisional

Probab=99.91  E-value=1.8e-21  Score=194.69  Aligned_cols=354  Identities=11%  Similarity=-0.015  Sum_probs=232.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc----CchhHh-H
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY----GRKAML-T   85 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~----Grk~~l-~   85 (484)
                      ....++.+...+..++..+.++.|.++..       +++..+.|.+.+...+...+..|++|+++||.    ||||.. .
T Consensus        11 ~~yg~g~~~~~~~~~~~~~~l~~y~~~~~-------gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~   83 (448)
T PRK09848         11 VGYSLGDVANNFAFAMGALFLLSYYTDVA-------GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLL   83 (448)
T ss_pred             HhhccchHHhHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHH
Confidence            33345666677777778888888877654       56677889999999999999999999999996    777654 5


Q ss_pred             HHHHHHHHHHHHHHhcc-ch---hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC-ccchhHHHHHHHHH-----HHh
Q 011514           86 LPLTLSIIPLAILAYRR-SI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGV-----LSA  155 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~-~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~  155 (484)
                      .+.+...+...+....+ ..   ...+..+....+.+++. +...+...++..|..+ +++|.+..+....+     ..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~  162 (448)
T PRK09848         84 FGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCY-SLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCL  162 (448)
T ss_pred             HHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHH-HHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            55554554444432112 11   11233344445566544 4555566777777765 46788877665543     234


Q ss_pred             HHhHHHHhhHhhh------hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCccc
Q 011514          156 SFVCGTLAARFLS------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVC  229 (484)
Q Consensus       156 g~~ig~~l~~~l~------~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (484)
                      +..++|.++...+      |.....+.+++..+..+......||+++.+++                             
T Consensus       163 ~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~~-----------------------------  213 (448)
T PRK09848        163 AFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVA-----------------------------  213 (448)
T ss_pred             HHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCCcc-----------------------------
Confidence            5666776665432      11111222223333333333334544221110                             


Q ss_pred             CCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 011514          230 KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI  309 (484)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (484)
                        +++.++.++.+++||.++...+..++............|+|.++.+|.++...+.......++..++. .+.+++.||
T Consensus       214 --~~~~~~~~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~l~~~l~~r  290 (448)
T PRK09848        214 --QPSLKISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASA-PLVPGMVAR  290 (448)
T ss_pred             --CCCHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence              12345556668899999988888888887777777788888988888776654443333345555666 666999999


Q ss_pred             hcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhh
Q 011514          310 LGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVV  389 (484)
Q Consensus       310 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  389 (484)
                      +|+|+.+..+..+..++.+.+.+.+....                        |.            ......+.+++.+
T Consensus       291 ~g~~~~~~~g~~~~~i~~~~~~~~~~~~~------------------------~~------------~~~~~~l~g~G~~  334 (448)
T PRK09848        291 IGKKNTFLIGALLGTCGYLLFFWVSVWSL------------------------PV------------ALVALAIASIGQG  334 (448)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHcCchhH------------------------HH------------HHHHHHHHHHHHH
Confidence            99999999998888877776655432111                        00            1333446788888


Q ss_pred             hhhhHHHHHHhcccCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          390 FATPSFRSIVSKQVGPN-------EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       390 ~~~~~~~~~~~~~~p~~-------~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      ...+...++..|..|++       ++|..+|+.+....+|..+|+.+.|.+.+.. +++
T Consensus       335 ~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~-G~~  392 (448)
T PRK09848        335 VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLS-GYI  392 (448)
T ss_pred             HHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            88888888888888754       4699999999999999999999999998875 543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.91  E-value=2.6e-23  Score=213.90  Aligned_cols=298  Identities=13%  Similarity=0.155  Sum_probs=216.6

Q ss_pred             HHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHH
Q 011514           16 TVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (484)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~   95 (484)
                      ..+...+..+...+.++.+.+++        +++..+.|++.+.+.++++++.++.|+++||+|||+.+.++.++.+++.
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F--------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~  112 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRF--------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGS  112 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhh--------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHH
Confidence            44444555567777777776665        5556677999999999999999999999999999999999999999999


Q ss_pred             HHHHhccc------------------------------------------------hhhHHHHHHHHHHhhhhccchhhH
Q 011514           96 AILAYRRS------------------------------------------------ISFFYAYYALRTLTAMVCEGSINC  127 (484)
Q Consensus        96 ~~~~~~~~------------------------------------------------~~~~~~l~~~r~l~G~~~~g~~~~  127 (484)
                      +++++.+-                                                ...+..++++|+++|++. +...+
T Consensus       113 ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~-~~~~~  191 (633)
T TIGR00805       113 FLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGA-TPIFP  191 (633)
T ss_pred             HHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccC-Ccchh
Confidence            99887630                                                002456789999999765 77778


Q ss_pred             hhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh--------------------------hhHHHHHHHHHHHH
Q 011514          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIVSM  181 (484)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l--------------------------~~~~~f~~~~~~~~  181 (484)
                      ...+++.|++|+++|++++++......+|..+|+++++.+                          +|+..|++.+++.+
T Consensus       192 ~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~  271 (633)
T TIGR00805       192 LGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVAL  271 (633)
T ss_pred             cCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888652                          27778888887777


Q ss_pred             HHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhch
Q 011514          182 LAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLS  261 (484)
Q Consensus       182 i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (484)
                      +..+.. +.+|++.++...+.+.+...   .+..++.+++  ..........+..+..+.+.+||.++...+..++....
T Consensus       272 l~~v~l-~~~p~~lp~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~  345 (633)
T TIGR00805       272 LTSIPF-FFFPKALPKEGKRVNVDVHE---TEKLEKSEDK--SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA  345 (633)
T ss_pred             HHHHHH-HhCccccCCcccccchhhhh---hhcccccccc--cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            766544 45666543221110000000   0000000000  00000011122334455688899999999999999999


Q ss_pred             hhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHH-HHHHHHHHHHHhhhhhc--chHHHHHhHHHHHHHHHH
Q 011514          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA-GTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI  329 (484)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~  329 (484)
                      ..++.+++|.|+++.+|+++.+++.+.....+. .+++. +++|+++||++  .|+.+..+..+..++.+.
T Consensus       346 ~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~-~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       346 FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGY-LIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHH-hhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877764 45555 88899999987  456777777666665443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=3.8e-22  Score=203.45  Aligned_cols=338  Identities=19%  Similarity=0.131  Sum_probs=232.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhH
Q 011514           48 LAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINC  127 (484)
Q Consensus        48 ~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~  127 (484)
                      .+.....+..+++.+|.+++++++|.++||+|||++++.+.++..++.++.++++|   ++.+++.|++.|++.++. ..
T Consensus       115 ~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~---~~~~~~~Rfl~G~~~~~~-~~  190 (521)
T KOG0255|consen  115 DSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN---YWMFLIFRFLSGFFGSGP-LT  190 (521)
T ss_pred             CcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHhhccch-hH
Confidence            34567788999999999999999999999999999999999999999999999999   899999999999877444 46


Q ss_pred             hhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh--hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 011514          128 LALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTR  205 (484)
Q Consensus       128 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l--~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~  205 (484)
                      ....+++|+.++++|+.+..+ ......+..+++..++++  +||+.+++..+...+..++ ++..||+|++...+++.+
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~  268 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRID  268 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchH
Confidence            899999999999999999999 666666667776666654  7999999999777776655 666779999876665554


Q ss_pred             CcccccccccCCC---CCC---CCcc--Cccc-----CCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHH
Q 011514          206 PIITEETEGVNQN---ESN---SPVK--IPVC-----KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF  272 (484)
Q Consensus       206 ~~~~~~~~~~~~~---~~~---~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (484)
                      ++....++..+.+   .+.   .+..  ....     ++.....+    +.+.++++...+...+.++.......-++..
T Consensus       269 ~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~  344 (521)
T KOG0255|consen  269 EAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLD----LFRTPRLRYRTLYLLFIWFVFSLVYYGLSLN  344 (521)
T ss_pred             HHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhh----hhcCHHHHHHHHHHHHHHHHHhHHHHhhhhh
Confidence            4443322211100   000   0000  0000     01112222    4444544444444444443333323223333


Q ss_pred             HhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHH
Q 011514          273 LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLL  352 (484)
Q Consensus       273 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  352 (484)
                      ... +|.+..   ......+....... ...+...|+.|||.....+..+..++++..++......              
T Consensus       345 ~~~-lg~~~~---~~~~~~~~~~~p~~-~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  405 (521)
T KOG0255|consen  345 VSG-LGGNIY---LNFTLSGLVELPAY-FRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLG--------------  405 (521)
T ss_pred             hhh-cCchHH---HHHHHHHHHHhhHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccch--------------
Confidence            322 343332   33333334444444 55578899999999999999999999988887664332              


Q ss_pred             HhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          353 SFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSP  432 (484)
Q Consensus       353 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~  432 (484)
                            . ++              ......+..++.+........+..|.+|+..|+.+.+..+....++.+++|.+.-.
T Consensus       406 ------~-~~--------------~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~  464 (521)
T KOG0255|consen  406 ------G-WL--------------HWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLL  464 (521)
T ss_pred             ------h-HH--------------HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0 00              02333344455555666668899999999999999999999999999999998754


Q ss_pred             HHH
Q 011514          433 LTA  435 (484)
Q Consensus       433 l~~  435 (484)
                      ...
T Consensus       465 ~~~  467 (521)
T KOG0255|consen  465 LRQ  467 (521)
T ss_pred             Hhh
Confidence            443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=6.8e-22  Score=178.75  Aligned_cols=371  Identities=15%  Similarity=0.062  Sum_probs=247.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSIN  126 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~  126 (484)
                      +.+..+..++......+..+++-.||..+|++|||+.+....+...+...+.+.++|   +..+.+.|.+.|.+. |. .
T Consensus       109 ~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spn---f~~L~~f~~l~~~g~-gg-~  183 (528)
T KOG0253|consen  109 GPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPN---FASLCVFRALWGFGV-GG-L  183 (528)
T ss_pred             chhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCC---eehhhHHHHHHhccC-CC-c
Confidence            566667789999999999999999999999999999999999999999999999999   889999999999766 44 5


Q ss_pred             HhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCC
Q 011514          127 CLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDD  202 (484)
Q Consensus       127 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~  202 (484)
                      |...++-.|..|..+|....-.. ..+.+|.+....+.-.    +||||...... ..+..+....+++||+|+..-.++
T Consensus       184 pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~-~pl~~~a~f~~w~~ESpRf~~~~G  261 (528)
T KOG0253|consen  184 PVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS-TPLMFAARFLVWVYESPRFYLAKG  261 (528)
T ss_pred             cHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hHHHHHHHHHhhcccCcchhhhcC
Confidence            78889999999998988877666 8888888887766633    69999888877 444444555567999998765555


Q ss_pred             CCCCccccccc-----------------ccCCCCCCC--Ccc---CcccCCCCchHHHHHHhhccchhHHHHHHHHHHhc
Q 011514          203 LTRPIITEETE-----------------GVNQNESNS--PVK---IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL  260 (484)
Q Consensus       203 ~~~~~~~~~~~-----------------~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (484)
                      +..++.+..++                 ..+++++++  .++   +..++...+..+.+..-.+ +.........|...+
T Consensus       262 ~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lr-kttlllw~iwfgnaf  340 (528)
T KOG0253|consen  262 DDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLR-KTTLLLWRIWFGNAF  340 (528)
T ss_pred             ChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHH-HHHHHHHHHHHhhHH
Confidence            54444331110                 111111111  011   1112222333333222111 222223333333333


Q ss_pred             hhhhhHHH-----------------HHHHHhhhcC--cChhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhH
Q 011514          261 SEGGMQAS-----------------FLYFLKAQFH--FNKNQFADL-MLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (484)
Q Consensus       261 ~~~~~~~~-----------------~~~~~~~~~g--~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  320 (484)
                      .+++..-.                 .|.+.+-...  .+..+ -+. ..+..+....+. ++.+++.||+|||+.+..++
T Consensus       341 syyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~-dYrdllitslaefPGl-LIt~~iverlGRKkTMal~l  418 (528)
T KOG0253|consen  341 SYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAK-DYRDLLITSLAEFPGL-LITGVIVERLGRKKTMALSL  418 (528)
T ss_pred             HHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchh-HHHHHHHHHHhhCCch-hHHHHHHHHhcchhHHHHHH
Confidence            33332222                 2222222110  11111 121 223445555565 88899999999999999999


Q ss_pred             HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          321 FAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      +++++..+.+....+...                                      .....+..-++....+...+.+..
T Consensus       419 ~~f~iflfll~~c~~rn~--------------------------------------~tvllf~arafisg~fqvaYvYtP  460 (528)
T KOG0253|consen  419 ILFGIFLFLLTTCKTRNA--------------------------------------YTVLLFTARAFISGAFQVAYVYTP  460 (528)
T ss_pred             HHHHHHHHHHHHhcCcch--------------------------------------hHHHHHHHHHHHhchheEEEEecC
Confidence            999888877766554433                                      122223445566667777888999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPASS  475 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (484)
                      |.+|+..|+++.|..+....+|+++.|.++ ...+.  +...       +..+.+.+++++.+...+++-+++.+
T Consensus       461 EVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~--s~sl-------~i~vy~~~~ilagIavcffPiEtkGR  525 (528)
T KOG0253|consen  461 EVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAEL--STSL-------PIFVYGALFILAGIAVCFFPIETKGR  525 (528)
T ss_pred             cccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhcc--ceee-------hHHHHHHHHHHHHHHheeeeeccCCC
Confidence            999999999999999999999999999998 33332  3333       34677777777777777777766543

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.91  E-value=2.7e-21  Score=184.83  Aligned_cols=404  Identities=10%  Similarity=0.009  Sum_probs=252.2

Q ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHH-HHHHHHHHHHHHHHHHhhhhhcccccCch
Q 011514            3 MEKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYL-SGFQQAIIGLGTLVMMPVIGNLSDQYGRK   81 (484)
Q Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~-~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk   81 (484)
                      |+.|++....+|+.-|+..+=.+ ..-..|.+.+|+        +++..+ .|.+.+++..+++++.++.|.++||+|.|
T Consensus        22 ~~~W~~~~~~lC~fGF~~e~R~n-~s~a~p~L~~el--------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K   92 (511)
T TIGR00806        22 LKSWRVLVLYLCFYGFMAQFRPG-ESFITPYLLTVL--------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYK   92 (511)
T ss_pred             hcchhHHHHHHHHHHHHHHhhch-HHHHHHHHHHHc--------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            34566655555555555443221 111333444333        555566 79999999999999999999999999999


Q ss_pred             hHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHH
Q 011514           82 AMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        82 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      +++..+.+..++..++++++++   ++.+.+.|++.|++- +... +...++.+++|+++|+++.++..++..+|.++++
T Consensus        93 ~vL~l~~l~Wsl~t~L~~fa~S---l~~L~i~R~llGvaE-A~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~  167 (511)
T TIGR00806        93 PVLVLQALSFVCVWLLLLLGTS---VWHMQLMEVFYSVTM-AARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSS  167 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999   899999999999754 7776 8999999999999999999999999999999999


Q ss_pred             HhhHh---hhhHHHHH---HHHHHHHHHHHHHHHHcccCCCCCC--CCCCCCCcccccccccCCCCCCCCccCcccCCCC
Q 011514          162 LAARF---LSTTSAFQ---AATIVSMLAAAYMRVFLKDDVPNDD--DDDLTRPIITEETEGVNQNESNSPVKIPVCKKIP  233 (484)
Q Consensus       162 ~l~~~---l~~~~~f~---~~~~~~~i~~~~~~~~lpe~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (484)
                      ++++.   +|||.-+.   +.. .+....++..+++|..++..-  ++++.++....+.+...+.+.....+....+...
T Consensus       168 ~L~qll~s~gWr~y~~Ln~Isl-~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (511)
T TIGR00806       168 VLGQLLVTLGWISYSTLNIISL-VFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDS  246 (511)
T ss_pred             HHHHHHHhcCchhHHHHHHHHH-HHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhH
Confidence            88876   47875433   333 233333444466885544211  1100000000000000000000000000001111


Q ss_pred             c---hHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011514          234 S---IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL  310 (484)
Q Consensus       234 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  310 (484)
                      .   +..-++...+|+.+....+-..+...++....++.....++..+-.+...|..-.+..+.+.+.. +..|++-.++
T Consensus       247 ~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a-~~ag~~~~~w  325 (511)
T TIGR00806       247 FLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITS-FIAGFVNIRW  325 (511)
T ss_pred             HHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHH-HHHHhhcCCc
Confidence            1   22223334567887777777777666666666666554444423112234667777777777777 6668876655


Q ss_pred             cchH--HHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhh
Q 011514          311 GEAK--LLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLV  388 (484)
Q Consensus       311 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  388 (484)
                      .+..  .+.+...+.+..++++...++.|.                                      .....+++...+
T Consensus       326 ~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~--------------------------------------~Y~~yvlf~~~y  367 (511)
T TIGR00806       326 ARWSKLLIAVVSAIQAGLVFWMSQSHDIWV--------------------------------------LYVTYVLFRGIY  367 (511)
T ss_pred             hhhHHHHHHHHHHHHHHHhhhhhcccchHH--------------------------------------HHHHHHHHHHHH
Confidence            4422  333344455556677777777777                                      123344667777


Q ss_pred             hhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h--cCCCCcccCchHHHHHHHHHHHHHH
Q 011514          389 VFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF-L--SKGAPFNFPGFSIMCIGLASMVAFI  463 (484)
Q Consensus       389 ~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~  463 (484)
                      ....+.....+++....+.-|-++|+++++.-+-+.+-..+.   .|.. .  +...-|...+.-|.+.+++.++...
T Consensus       368 ~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iV---vd~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~  442 (511)
T TIGR00806       368 QFLVPIATFQIASSLSKELCALVFGINTFVATALKTIITAVV---SDKRGLGLQVRKQFRIYSVYFLVLSIICFFGAG  442 (511)
T ss_pred             HHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEE---EcccccCCCceeEEEehhhHHHHHHHHHHHHHH
Confidence            888888888888888888889999999988776665544332   2221 0  1122233334445555555555444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.91  E-value=1.8e-21  Score=190.09  Aligned_cols=374  Identities=33%  Similarity=0.535  Sum_probs=278.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchh-HHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSL-AIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ...+....++..++.++..+..........|...++.+. +....+.-.....+...+.++..|.++||+|||..+....
T Consensus        20 ~~~~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~   99 (463)
T KOG2816|consen   20 MRHLEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPL   99 (463)
T ss_pred             hhHHHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHH
Confidence            455566777788888877766666555544333333222 2223344334457888999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhc-cchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVC-EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~-~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      ....+..+...+...    |. ++   +.|+.+ -+.......++++|.+.+++|....++.+.....+..++|.+++.+
T Consensus       100 ~~~~l~~~~~~~~~~----~~-~~---~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~  171 (463)
T KOG2816|consen  100 FGTILPALCLLFQGY----WF-FL---LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYL  171 (463)
T ss_pred             HHHHHhHHHHHHHHH----HH-hh---hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999998888877652    22 22   333322 1345567899999999999999999999999999999999999874


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhh
Q 011514          168 ----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLR  243 (484)
Q Consensus       168 ----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (484)
                          +.-.+|.++.+..++..++..+++||+.+++++++.             ...+....+....+..+..+...+ ..
T Consensus       172 ~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~~  237 (463)
T KOG2816|consen  172 VKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKERSDA-------------TLRELTPGSLDSSHVADAFQSLTK-VG  237 (463)
T ss_pred             HHhcCchHHHHHHHHHHHHHHHHHhhccccccCccccccc-------------cccccCCCcccchhhhhhhhhhcc-cC
Confidence                667889999999999999999999999876655410             000000000000111111111111 33


Q ss_pred             ccchhHHHHHHHHHHhchhhh-hHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGG-MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      ++|..+.+.+..+........ .....+.|++..++|++.+.+.+.+..+....+.+.+..+.+.+.++.++.+..|+..
T Consensus       238 ~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~  317 (463)
T KOG2816|consen  238 PDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLS  317 (463)
T ss_pred             CCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHH
Confidence            445555555555554444433 3324578899999999999999999999999999988888999999999999999999


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ..+.....++.++.|+                                       ++.............|...+..+..
T Consensus       318 ~~~~~~~~af~~~~w~---------------------------------------~~~~~v~~~~~~~~~pa~~s~~s~~  358 (463)
T KOG2816|consen  318 EFLQLLLFAFATETWM---------------------------------------MFAAGVVVALAGIVFPAIRAFASIL  358 (463)
T ss_pred             HHHHHHHHHHhccchh---------------------------------------hhHHHHHHHhhcchhHHHHhHHHhh
Confidence            9999999999999998                                       7777778888888999999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  444 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~  444 (484)
                      ++++++|+++++...+..+.+.++|.+.+.++..+.....+.
T Consensus       359 v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~~~~~~  400 (463)
T KOG2816|consen  359 VSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLDDLPGF  400 (463)
T ss_pred             cccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc
Confidence            999999999999999999999999999999998875555443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.90  E-value=2.1e-21  Score=192.92  Aligned_cols=326  Identities=15%  Similarity=0.127  Sum_probs=252.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhccc----ccCchhH-hHHHHHHHHHHHHHHHhc-c-ch---hhHHHHHHHHHH
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSD----QYGRKAM-LTLPLTLSIIPLAILAYR-R-SI---SFFYAYYALRTL  116 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D----r~Grk~~-l~~~~~~~~i~~~~~~~~-~-~~---~~~~~l~~~r~l  116 (484)
                      ++++...|++..+..+..++..|+.|.++|    |+||||. ++.+....+++..++... + +.   ....++.+..++
T Consensus        33 gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l  112 (428)
T PF13347_consen   33 GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL  112 (428)
T ss_pred             CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH
Confidence            677788899999999999999999999999    7998665 557888888888888766 4 21   123344666666


Q ss_pred             hhhhccchhhHhhhHHHhhcCC-ccchhHHHHHHHHHHHhHHhHHHHhhHh----h-------hhHHHHHHHHHHHHHHH
Q 011514          117 TAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAARF----L-------STTSAFQAATIVSMLAA  184 (484)
Q Consensus       117 ~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l-------~~~~~f~~~~~~~~i~~  184 (484)
                      ..++. ........++.+|.++ +++|.+..+..+....+|.++...+...    +       +|++...+.+++..+..
T Consensus       113 ~~~~~-t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~  191 (428)
T PF13347_consen  113 FDIAY-TFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFF  191 (428)
T ss_pred             HHHhh-hhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHh
Confidence            67655 4445568899999997 5799999999988888887644433322    1       58888888888888888


Q ss_pred             HHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhh
Q 011514          185 AYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGG  264 (484)
Q Consensus       185 ~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (484)
                      +...+..||.+++.++                            ++++.+.++.++.+++||.++...+..++.......
T Consensus       192 ~i~~~~~ke~~~~~~~----------------------------~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~  243 (428)
T PF13347_consen  192 LITFFFVKERSVEVTE----------------------------QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFAL  243 (428)
T ss_pred             hhhhheeeeccccccc----------------------------cccccccccchhhhcccchHHHHHHHHHHHHhhhhh
Confidence            8888888882221111                            112234556666688899999999999999888888


Q ss_pred             hHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc--chhhHHHh
Q 011514          265 MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--SAWVIKIF  342 (484)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  342 (484)
                      .....++|.++..|.+ ...+.+.....+...++. ++.++++||+|+|+.+..+..+.+++.+.+.+.+  +.+.    
T Consensus       244 ~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~-~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  317 (428)
T PF13347_consen  244 MNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGS-PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWL----  317 (428)
T ss_pred             hhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHH-HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHH----
Confidence            8889999999988877 455777777888888887 5559999999999999999999888888777665  4444    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC-------CchhHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP-------NEQGKAQGCI  415 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-------~~~g~~~g~~  415 (484)
                                                        ..+...+.+++.+.......++..|..+.       ++.|..+|+.
T Consensus       318 ----------------------------------~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~  363 (428)
T PF13347_consen  318 ----------------------------------VLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVN  363 (428)
T ss_pred             ----------------------------------HHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhh
Confidence                                              25556688888888888889999988763       4568999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          416 SGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       416 ~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +....++..+++.+.|.+.+.. +++.
T Consensus       364 ~~~~k~~~~la~~i~g~~l~~~-Gy~~  389 (428)
T PF13347_consen  364 SFFIKIGQGLAGAIVGLLLALV-GYDA  389 (428)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHh-CcCC
Confidence            9999999999999999999886 5543

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.90  E-value=1.3e-20  Score=187.61  Aligned_cols=362  Identities=14%  Similarity=0.085  Sum_probs=242.9

Q ss_pred             HHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc
Q 011514           23 ATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR  102 (484)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~  102 (484)
                      ........++.+.+|.   |.++ +     ..|+.+...++..++.++.|+++|.+|||.+++.+.++..+|.++++.++
T Consensus        59 ~~~~~a~~l~~I~~di---G~~~-~-----~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~  129 (599)
T PF06609_consen   59 VLVLPASILPYINADI---GGSD-N-----WSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ  129 (599)
T ss_pred             HHhccHHHHHHHHHhc---CCCc-c-----chHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC
Confidence            3344456677777666   5443 2     25888889999999999999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHHHHHHH
Q 011514          103 SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATI  178 (484)
Q Consensus       103 ~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~  178 (484)
                      |   ...++++..+.|++. |... .....++|..|.|.|....+......-.....+|.++..+    +|||.|++.++
T Consensus       130 ~---~~~~iag~~l~Gvga-G~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i  204 (599)
T PF06609_consen  130 N---MNTFIAGMVLYGVGA-GVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFII  204 (599)
T ss_pred             c---HHHHHHHHHHHHHhh-HHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHH
Confidence            9   888899999999754 5554 5677799999999998887777665555555667666543    79999999998


Q ss_pred             HHHHHHHHHHHH-cccCCCCCCCCCC-CCC-ccccc------------------ccccC-CCCCCCCcc-----------
Q 011514          179 VSMLAAAYMRVF-LKDDVPNDDDDDL-TRP-IITEE------------------TEGVN-QNESNSPVK-----------  225 (484)
Q Consensus       179 ~~~i~~~~~~~~-lpe~~~~~~~~~~-~~~-~~~~~------------------~~~~~-~~~~~~~~~-----------  225 (484)
                      +..+.++...++ .|++++..+.++. .++ ..+.|                  ..... ..++++.+-           
T Consensus       205 ~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~L  284 (599)
T PF06609_consen  205 WSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLL  284 (599)
T ss_pred             HHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHH
Confidence            877776655443 3333221111110 011 11100                  01111 122222221           


Q ss_pred             ------CcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChh---hHHHHHHHHHHHHH
Q 011514          226 ------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKN---QFADLMLIAGLAGT  296 (484)
Q Consensus       226 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~  296 (484)
                            +.....++++.. .+.++++|.+...+++.++....+.....++|......++-++.   +.++.....+++..
T Consensus       285 v~F~~wE~~~~~~~Pl~P-~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~  363 (599)
T PF06609_consen  285 VAFVVWEWFGAPKDPLFP-HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSC  363 (599)
T ss_pred             HHHHHhhhhccCCCCcCC-HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHH
Confidence                  111111122211 22233345666666777777777777778888888877776653   45677777788777


Q ss_pred             HHHHHHHHHhhhhhcc-hHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhcc
Q 011514          297 ISQLLFMPLLAPILGE-AKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFM  375 (484)
Q Consensus       297 ~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  375 (484)
                      ++. .+.+.+..++++ |+.++++..++.+.+..++.......                    +.               
T Consensus       364 ~g~-~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~--------------------~~---------------  407 (599)
T PF06609_consen  364 AGA-VILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNK--------------------NA---------------  407 (599)
T ss_pred             HHH-HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCc--------------------ch---------------
Confidence            777 555888887776 55556676666655555544322111                    00               


Q ss_pred             chhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          376 QVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       376 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                       .....++.+++.+..........+-..|+++.|.+.|+..+++.+|+.+|..++..++..
T Consensus       408 -~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~~n  467 (599)
T PF06609_consen  408 -AIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIFTN  467 (599)
T ss_pred             -HHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence             133344667777777777777888889999999999999999999999999998877643

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00788 fbt folate/biopterin transporter

Probab=99.89  E-value=2e-20  Score=186.95  Aligned_cols=373  Identities=13%  Similarity=0.034  Sum_probs=235.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-----chhHhH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT   85 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~l~   85 (484)
                      ..+....+..++. +.....++.+.++.+       +++..+.+...+...++..+- +++|.++||++     ||+.++
T Consensus        29 ~~~~~~y~~qGl~-~l~~~~~~~~l~~~l-------g~s~~~i~~~~sl~~lpw~~K-~l~g~l~D~~~i~G~rRr~~l~   99 (468)
T TIGR00788        29 AIGLQVLFVKGIA-GLMRLPLSPMLTDDL-------GLDGARYQRLVGLSSLGWALK-PFAGVMSDTFPLFGYTKRWYLV   99 (468)
T ss_pred             HHHHHHHHHhhHH-HHhhhhhhHHHHHhc-------CCCHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCccchHHHH
Confidence            3444455666666 555555666665433       566677788899999998884 55999999997     677777


Q ss_pred             HHHHHH-HHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHH---HHHHHHHHhHHhHHH
Q 011514           86 LPLTLS-IIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAF---GILLGVLSASFVCGT  161 (484)
Q Consensus        86 ~~~~~~-~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~---~~~~~~~~~g~~ig~  161 (484)
                      ++.++. .+.....+..++.  .....+..++.+++. +...++..++..|..+ |++....   +......++|.++|+
T Consensus       100 ~~~~l~~~~~~~~l~~~~~~--~~~~~~~~~l~~~~~-a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~  175 (468)
T TIGR00788       100 LSGLLGSAILYGLLPGKVSS--AKVAAAFIFLAALAK-ALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISS  175 (468)
T ss_pred             HHHHHHHHHHHHhcccccch--HHHHHHHHHHHHHHH-HHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHH
Confidence            777666 3444444443441  233344778888654 6777899999999998 5544433   333333457888888


Q ss_pred             HhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHH
Q 011514          162 LAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRD  237 (484)
Q Consensus       162 ~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (484)
                      .+++.    .+|+..|++.+.+.++. .....++||++.....+.+++          +............+...+..++
T Consensus       176 ~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~  244 (468)
T TIGR00788       176 LLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTY----------LEMNMALLTLGVLANVKVQILG  244 (468)
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccccccccccccc----------chhhhhhhhhhHHHHHHHHHHH
Confidence            77776    47999999988777766 444566788642111110000          0000000000000000111233


Q ss_pred             HHHHhhccchhHHHHHHHHH-HhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          238 LICLLRSSVTLSQAAVVAFF-SGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      ..+ ..++|.++...+..++ +........... .+.++.+|+++.+.|......+++.+++. .+.+++.+|++.|+.+
T Consensus       245 l~~-~l~~~~i~~~l~fifl~~~~~~~~~~~~f-~~~~~~lG~s~~~~G~~~~~~~v~~i~g~-~~~~~~~~~~~~r~~l  321 (468)
T TIGR00788       245 LRG-AIQLLEIAKPLIFIFLSYANLPGASGSVF-CATTQCLPGGPSFSGMSKVVGNLGSLCGV-GGYDRFLKTFPYRLLF  321 (468)
T ss_pred             HHH-HHhcHHHHHHHHHHHHHHhhcCCCCceeE-EEEcccCCCCcchhhhHHHHHHHHHHHHH-HHHHHHHhhCCHHHHH
Confidence            333 3456777765555555 222222211111 13335579999999999999999999888 6668888999999999


Q ss_pred             HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          317 SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      .++.++.+++..........+...                   .         ..+....+.....+.+++.+.......
T Consensus       322 ~~~~~l~~~~~~~~~~l~~~~~~~-------------------~---------gi~~~~~~~~~~~l~~~~~g~~~~~~~  373 (468)
T TIGR00788       322 GVTTLLYTLSSLFDLILVKRWNLA-------------------F---------GISDEVFVLGDSIIAEVLAQLKFMPFL  373 (468)
T ss_pred             HHHHHHHHHHHhCceeeeeccccc-------------------c---------CCCCeeeeeehhHHHHHHHHHHHccHH
Confidence            999888887765543222111100                   0         000000013344567777788888889


Q ss_pred             HHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 011514          397 SIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFL  438 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~  438 (484)
                      .++++..|++.+|+.+++.+++.++|..+++.++|.+.++.+
T Consensus       374 ~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       374 VLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999873

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.88  E-value=3.6e-19  Score=171.18  Aligned_cols=358  Identities=14%  Similarity=0.073  Sum_probs=272.7

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCchh-HhHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKA-MLTLP   87 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~-~l~~~   87 (484)
                      --.+.+...+........+..+.+|.       .++++...|.+..+.-+-.++..|+.|.++||    +||+| .++.+
T Consensus        17 Yg~gd~~~~~~~~~~~~yLl~fYTdv-------~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g   89 (467)
T COG2211          17 YGLGDFASNFAFGIVVLYLLFFYTDV-------FGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG   89 (467)
T ss_pred             hcchhhHHHHHHHHHHHHHHHHHhcc-------cCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence            34455555566666666666666554       47888899999999999999999999999995    78754 56678


Q ss_pred             HHHHHHHHHHHHhccch---hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC-ccchhHHHHHHHHHHHhHHhHHHHh
Q 011514           88 LTLSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      .+..++.+.++..+++.   ......++...+.+++- ...+....++.+|+++ ++||.+..++-+...++|..+...+
T Consensus        90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~Y-T~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~  168 (467)
T COG2211          90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGY-TLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVL  168 (467)
T ss_pred             hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHH-HheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889998888888752   23455666777777655 4444568888999986 7899999999999998886554322


Q ss_pred             -----hH------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCC
Q 011514          164 -----AR------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKI  232 (484)
Q Consensus       164 -----~~------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (484)
                           ..      ..||+..-.+.+++..+..+.+++..+|...+..+.                          +...+
T Consensus       169 ~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~--------------------------~~~~~  222 (467)
T COG2211         169 FPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT--------------------------KTGVK  222 (467)
T ss_pred             HHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC--------------------------ccccc
Confidence                 21      247788888888888888888888888866533221                          01123


Q ss_pred             CchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 011514          233 PSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE  312 (484)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~  312 (484)
                      .++++.+..+++||.++..++..++...+.....+...+|.+..+|.++..............+++. ++.+++++|+|+
T Consensus       223 ~~~~~~~~~~~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~-~~~p~L~~~~gk  301 (467)
T COG2211         223 LKLKDSFLLIFKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGL-ILWPRLVKKFGK  301 (467)
T ss_pred             ccHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhch
Confidence            4566667778899999999998888888888888889999999989888887666666666555555 666999999999


Q ss_pred             hHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhh
Q 011514          313 AKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFAT  392 (484)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  392 (484)
                      |++...+.++.+++.+.+.+.+....                                    ..+++..++.+++.+...
T Consensus       302 k~~~~~~~~~~~i~~~~~~f~~~~~~------------------------------------~l~~~~~~i~~~g~~~~~  345 (467)
T COG2211         302 KKLFLIGLLLLAVGYLLLYFTPAGSV------------------------------------VLIVVALIIAGVGTGIAN  345 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCcch------------------------------------HHHHHHHHHHHHHhhccc
Confidence            99999999999999888887763322                                    001444457788889999


Q ss_pred             hHHHHHHhcccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          393 PSFRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       393 ~~~~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +..+++++|.++       .+..|..+|....+..+|.+++..+.|++.+.. |+..
T Consensus       346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~-Gyv~  401 (467)
T COG2211         346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI-GYVP  401 (467)
T ss_pred             cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC
Confidence            999999998764       345688999999999999999999999999987 5543

>TIGR01272 gluP glucose/galactose transporter

Probab=99.87  E-value=1.3e-19  Score=171.13  Aligned_cols=263  Identities=12%  Similarity=0.097  Sum_probs=197.2

Q ss_pred             HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh--------------------
Q 011514          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF--------------------  166 (484)
Q Consensus       107 ~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~--------------------  166 (484)
                      ++.++++-++.|.+. +...+..++++++..++|++++.+++.+.++++|.++||.+++.                    
T Consensus        10 ~~~~l~~~f~~g~G~-~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~   88 (310)
T TIGR01272        10 YVLFLGALFVLASGL-TILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEA   88 (310)
T ss_pred             HHHHHHHHHHHHhhH-HHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHH
Confidence            788899999999654 88889999999999999999999999999999999999998874                    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHH-HHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhcc
Q 011514          167 LSTTSAFQAATIVSMLAAAYMR-VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS  245 (484)
Q Consensus       167 l~~~~~f~~~~~~~~i~~~~~~-~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (484)
                      ..|+++|++.+.+..+..+... ..+||.+++++++                ..+         ++..+.++    ..++
T Consensus        89 ~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~----------------~~~---------~~~~~~~~----~~~~  139 (310)
T TIGR01272        89 AKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVAR----------------VSS---------GDTTQKTS----AFQF  139 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCCCcccccc----------------ccc---------ccccchhh----HHhh
Confidence            2578999866655444443332 2234322111000                000         00000111    3445


Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhh--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  323 (484)
                      |.++...+..+++.....+...+.+.|+++.  +|+++.+.+...+....+.++++ ++.+++.||+++++.+..+..+.
T Consensus       140 ~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr-~~~~~l~~r~g~~~~l~~~~~l~  218 (310)
T TIGR01272       140 THLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGR-FIGSAVMPMISQGRYLAFNAFLA  218 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHHHHHHH
Confidence            7777777888888888899999999999864  69999999999999999999998 88899999999999888887777


Q ss_pred             HHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc
Q 011514          324 CINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV  403 (484)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  403 (484)
                      .++.++....+....                                       .+...+.+++.+..+|...+...+..
T Consensus       219 ~~~~~l~~~~~~~~~---------------------------------------~~~~~l~g~~~s~i~P~~~s~a~~~~  259 (310)
T TIGR01272       219 VLLSIGAALTHGYVA---------------------------------------MWFVLALGLFNSIMFPTIFSLALNAL  259 (310)
T ss_pred             HHHHHHHHHcCCHHH---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            776655544443323                                       33445788999999999999999888


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          404 GPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       404 p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      |+ +.+++.++. ....+|+.++|.+.|.+.|.. +.+.
T Consensus       260 ~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~-g~~~  295 (310)
T TIGR01272       260 GR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCL-GIQL  295 (310)
T ss_pred             hh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhc-cchH
Confidence            84 466777775 677899999999999999976 5544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=99.87  E-value=1.2e-18  Score=174.11  Aligned_cols=349  Identities=11%  Similarity=0.001  Sum_probs=228.1

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCchhH-hHHHHH
Q 011514           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM-LTLPLT   89 (484)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~-l~~~~~   89 (484)
                      ++.+.......+....+..+..|..       ++++...|.+..+.-+-.++..|+.|.++||    +||||. ++.+.+
T Consensus        16 ~g~~~~~~~~~~~~~~l~~fyt~~~-------Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i   88 (460)
T PRK11462         16 MGDAASHIIFDNVMLYMMFFYTDIF-------GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGAL   88 (460)
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHhh-------CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHH
Confidence            3444445555555556666665543       7788889999999999999999999999996    688665 456777


Q ss_pred             HHHHHHHHHHhccch---hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC-ccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           90 LSIIPLAILAYRRSI---SFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      ..+++..++...++.   .....+.+..++..++. ........++.+|.++ +|||++..++...+..+|..+++.+..
T Consensus        89 ~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~-t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~  167 (460)
T PRK11462         89 PFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY-TVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMM  167 (460)
T ss_pred             HHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH-HHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778777776655532   12334455555556544 4444568889999987 789999999999999888777765532


Q ss_pred             h----h-------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCc
Q 011514          166 F----L-------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPS  234 (484)
Q Consensus       166 ~----l-------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (484)
                      .    +       +|+....+.+++..+.....+...+|.++.++                               ++.+
T Consensus       168 plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~-------------------------------~~~~  216 (460)
T PRK11462        168 PLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP-------------------------------TTTS  216 (460)
T ss_pred             HHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc-------------------------------cCCC
Confidence            1    2       45655556565555555554444444321110                               1123


Q ss_pred             hHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchH
Q 011514          235 IRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAK  314 (484)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~  314 (484)
                      .++.++...+||.++......++.............+|.+...|. +...+.+.....+..+++. .+.+++.||+++|+
T Consensus       217 ~~~~l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~-~l~~~l~~r~gkk~  294 (460)
T PRK11462        217 MREDLRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGS-ALAKPLTDWKCKVT  294 (460)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHH
Confidence            566677788888888777666666666666666666666666554 3344566677777777777 77799999999988


Q ss_pred             HHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhH
Q 011514          315 LLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPS  394 (484)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  394 (484)
                      ....+..+..+....+.+.+.....         .                           .....++.+++.+...+.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~---------------------------~~~~~~l~g~~~~~~~~l  338 (460)
T PRK11462        295 IFWWTNALLAVISLAMFFVPMQASI---------T---------------------------MFVFIFVIGVLHQLVTPI  338 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhchhHHH---------H---------------------------HHHHHHHHHHHHHHHHHH
Confidence            8765544433323333222221110         0                           022223445555666666


Q ss_pred             HHHHHhcccC-------CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          395 FRSIVSKQVG-------PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       395 ~~~~~~~~~p-------~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      .+++..|..+       .+..|..++..+....+|..+++.+.|.+.+.. |+.
T Consensus       339 ~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~-Gy~  391 (460)
T PRK11462        339 QWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG-GYD  391 (460)
T ss_pred             HHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence            6777777665       344566678888999999999999999999875 554

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.86  E-value=1.8e-18  Score=170.67  Aligned_cols=384  Identities=11%  Similarity=0.035  Sum_probs=225.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CchhHh
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l   84 (484)
                      .+|.++.++...+...++.......+|.|+++.+       +.+..+.+.+.+.+.....++.++.|+++||+ ||||.+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~l-------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~i   79 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQL-------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAV   79 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHH
Confidence            4667778888888889998888889999987643       44556678889999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCcc--chhHHHHHHHHHHHhHHhHHHH
Q 011514           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .++.++..++.++++..++......+...++..|  . |...+...++++|.+|++  +|.+++++.....++|..++|.
T Consensus        80 liG~il~~lg~lll~~~~~~~~~~~l~l~li~iG--~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~  156 (493)
T PRK15462         80 MLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCG--Y-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPI  156 (493)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh--c-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHH
Confidence            9999999999877765432111112222333334  2 455567788999999875  6999999999999999999999


Q ss_pred             hhHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CCCCCCCCccccccccc----CCCCCC-CCccCcccCCC
Q 011514          163 AARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPND-DDDDLTRPIITEETEGV----NQNESN-SPVKIPVCKKI  232 (484)
Q Consensus       163 l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~  232 (484)
                      +.+.+    ||++.|.+.++.. +..+..+...++...+. ..+++..+.........    -..... .-......++.
T Consensus       157 l~g~L~~~~Gw~~~F~iaaigm-~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (493)
T PRK15462        157 ACGYAQEEYSWAMGFGLAAVGM-IAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEW  235 (493)
T ss_pred             HHHHHHhhhChHHHHHHHHHHH-HHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            98874    8999999876543 33333333222111110 00000000000000000    000000 00000000000


Q ss_pred             Cc-------------hHHHH-HHh--hccchh---HHHHHHHHHHhchhhhhHHHHHHHHhhhc-----CcChhhHHHHH
Q 011514          233 PS-------------IRDLI-CLL--RSSVTL---SQAAVVAFFSGLSEGGMQASFLYFLKAQF-----HFNKNQFADLM  288 (484)
Q Consensus       233 ~~-------------~~~~~-~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~~~~~~~  288 (484)
                      ..             +.... +..  .+++++   ..+.+...+++..+....+.+..|.++..     |++- ..+++.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~i-p~~~~q  314 (493)
T PRK15462        236 SVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTV-PTAMFQ  314 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceee-CHHHHH
Confidence            00             00000 000  011222   22333344444445555556666666542     3332 246778


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcc--h-----HHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhh
Q 011514          289 LIAGLAGTISQLLFMPLLAPILGE--A-----KLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQIS  361 (484)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~g~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~  361 (484)
                      +...+..++.++++ .++=.|.++  |     .-..+|+++.+++++.+.+......                 +++.++
T Consensus       315 slNp~~ii~l~P~~-a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~-----------------~~~~~s  376 (493)
T PRK15462        315 SINAFAVMLCGVFL-AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSA-----------------MYGHSS  376 (493)
T ss_pred             hHhHHHHHHHHHHH-HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcC-----------------CCCCcC
Confidence            88888888887555 334333311  1     1256777788888777754322111                 001122


Q ss_pred             HHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHH-HHHHHHHHHHHH
Q 011514          362 VHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGIS-SFANIVSPLIFS  431 (484)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~-~lg~~~gp~i~g  431 (484)
                      .++            ++....+.+++.-...|...+.+++..|++.+|+.+|...... .+|+.++..+.+
T Consensus       377 ~~w------------l~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~  435 (493)
T PRK15462        377 LPL------------MVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIAD  435 (493)
T ss_pred             HHH------------HHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222            1455567889999999999999999999999999999985532 444444444443

>PTZ00207 hypothetical protein; Provisional

Probab=99.86  E-value=4.5e-18  Score=170.62  Aligned_cols=373  Identities=12%  Similarity=0.049  Sum_probs=241.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhc------cchhhHHHHHHHHHHhhhh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR------RSISFFYAYYALRTLTAMV  120 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~------~~~~~~~~l~~~r~l~G~~  120 (484)
                      +.+..+.+++.++.. .....+++.|+++||+|||+++.++.++..+++++++++      .+   ++.+.+.|++.|++
T Consensus        58 gls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s---~~~l~l~r~l~G~G  133 (591)
T PTZ00207         58 NLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGS---VVRLSVYNGLMTLG  133 (591)
T ss_pred             CcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCc---HHHHHHHHHHHHHH
Confidence            344445566666533 334567789999999999999999999999999999987      46   88999999999975


Q ss_pred             ccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhH-HHHhhHhh--hhHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 011514          121 CEGSINCLALAYVADNISERQRASAFGILLGVLSASFVC-GTLAARFL--STTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (484)
Q Consensus       121 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i-g~~l~~~l--~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~  197 (484)
                      . +...+.....+.+++| ++||++.|+.....++|..+ +++..+.+  +|+..|++.+++..+..++...++++++..
T Consensus       134 ~-~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~  211 (591)
T PTZ00207        134 C-MLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFH  211 (591)
T ss_pred             H-HHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcch
Confidence            5 6666778888999996 78999999999999999864 56555554  788888888888888877777777766532


Q ss_pred             CC--CC---CCCCCc-----------------cc--------------------------------------c-------
Q 011514          198 DD--DD---DLTRPI-----------------IT--------------------------------------E-------  210 (484)
Q Consensus       198 ~~--~~---~~~~~~-----------------~~--------------------------------------~-------  210 (484)
                      ..  ++   +++++.                 ..                                      .       
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p  291 (591)
T PTZ00207        212 LTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFP  291 (591)
T ss_pred             hhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            11  00   111110                 00                                      0       


Q ss_pred             ---------cccccC-C--CCCCCC-c-----c-Ccc------cC-CCCchHHHHHHhhccchhHHHHHHHHHHhchhhh
Q 011514          211 ---------ETEGVN-Q--NESNSP-V-----K-IPV------CK-KIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGG  264 (484)
Q Consensus       211 ---------~~~~~~-~--~~~~~~-~-----~-~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (484)
                               +....+ +  .++.+. +     . .+.      .+ ..+...+.+....++..+|.++...++.......
T Consensus       292 ~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~  371 (591)
T PTZ00207        292 FMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFV  371 (591)
T ss_pred             HHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchhe
Confidence                     000000 0  000000 0     0 000      00 0011112344455678899999999998877777


Q ss_pred             hHHHHHHHHhhhcCcChhh--HHHHHHHHHHHHHHHHHHHHHHhhh----hh-----cchHHHHHhHHHHHHHHHHHhhc
Q 011514          265 MQASFLYFLKAQFHFNKNQ--FADLMLIAGLAGTISQLLFMPLLAP----IL-----GEAKLLSLGLFAACINMFICSIS  333 (484)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~----~~-----g~~~~~~~~~~~~~~~~~~~~~~  333 (484)
                      ....+.+..+..-|.+.++  ...+.++.++.+.++. +.+|.++.    |.     .|.-.+.+..+ +.++.+++.+.
T Consensus       372 ~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GR-l~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~  449 (591)
T PTZ00207        372 IIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGR-LCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT  449 (591)
T ss_pred             eeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhH-HHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH
Confidence            7777777666543652322  2226788888888888 76677662    21     11112333333 55555555554


Q ss_pred             cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514          334 WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  413 (484)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  413 (484)
                      .+...                                      +.+..++.|++.|...+.....++|.+. ++-|+-+-
T Consensus       450 ~p~~~--------------------------------------L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN  490 (591)
T PTZ00207        450 LPKAA--------------------------------------LPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYN  490 (591)
T ss_pred             CCccH--------------------------------------hHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhh
Confidence            43122                                      2556668999999999999999999999 88898888


Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCcc-----cCchHHHHHHHHHHHHHHHHH
Q 011514          414 CISGISSFANIVS-PLIFSPLTALFLSKGAPFN-----FPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       414 ~~~~~~~lg~~~g-p~i~g~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      +.....-+|..+- -.++|.+||.-...+....     -....|++.+++...+.+...
T Consensus       491 ~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~  549 (591)
T PTZ00207        491 FCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITST  549 (591)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHh
Confidence            8888888887766 6788889987531111100     112356666666655555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.85  E-value=3.5e-17  Score=153.17  Aligned_cols=357  Identities=14%  Similarity=0.085  Sum_probs=257.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-----chhHhH-HHHHHHHHHHHHHHhc-----c--------chhh
Q 011514           46 CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG-----RKAMLT-LPLTLSIIPLAILAYR-----R--------SISF  106 (484)
Q Consensus        46 ~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G-----rk~~l~-~~~~~~~i~~~~~~~~-----~--------~~~~  106 (484)
                      .+++....+.+.++..+.+. ..+.+|..||+.+     ||..++ .|.+....+..+.+++     .        .+..
T Consensus        10 L~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g   88 (403)
T PF03209_consen   10 LGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLG   88 (403)
T ss_pred             hccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHH
Confidence            37788888888888888766 5899999999998     776554 6666666665555542     2        1111


Q ss_pred             HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-h----hHH--HHHHHHHH
Q 011514          107 FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-S----TTS--AFQAATIV  179 (484)
Q Consensus       107 ~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-~----~~~--~f~~~~~~  179 (484)
                      .......-.+.|++. ........++++|..|||+|+++.++.....-+|.+++..+.+.+ .    .|.  .+...+++
T Consensus        89 ~~~a~l~F~l~G~G~-~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i  167 (403)
T PF03209_consen   89 LALAALAFLLYGLGV-HASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALI  167 (403)
T ss_pred             HHHHHHHHHHHHhhH-hHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHH
Confidence            234445566778755 555567999999999999999999999999999999998887763 1    122  22223323


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHh
Q 011514          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSG  259 (484)
Q Consensus       180 ~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (484)
                      .++..++..+ -.|++..+..+                         ..+++++++++.++.+..+|..++.....++..
T Consensus       168 ~~~l~~ia~w-g~E~r~~~~~~-------------------------~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t  221 (403)
T PF03209_consen  168 ALLLNLIALW-GQEPRRSRRAA-------------------------AAERPRPPFREAWRQVWASPQARRFFVFLFLGT  221 (403)
T ss_pred             HHHHHHHHHH-hcccCCccccc-------------------------CCCCCCccHHHHHHHHHhCCChhHHHHHHHHHH
Confidence            2222222222 23332222111                         112344577788888889999999999999988


Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHh-hhhhcchHHHHHhHHHHHHHHHHHhhc---cc
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLL-APILGEAKLLSLGLFAACINMFICSIS---WS  335 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~g~~~~~~~~~~~~~~~~~~~~~~---~~  335 (484)
                      +++..-...+-+|--+.+|++..|...+....+.+..++. ...+++ .+|.++++...++.....+++..+...   .+
T Consensus       222 ~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~-~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~  300 (403)
T PF03209_consen  222 LAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGM-LLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS  300 (403)
T ss_pred             HHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            8888888889999999999999999999999999988887 444554 447888888888888877776665443   33


Q ss_pred             hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHH
Q 011514          336 AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCI  415 (484)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~  415 (484)
                      .+.                                      +....+++|++.+.......+...+..++++.|...|..
T Consensus       301 ~~~--------------------------------------~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~W  342 (403)
T PF03209_consen  301 PWL--------------------------------------FRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAW  342 (403)
T ss_pred             chH--------------------------------------HHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHH
Confidence            444                                      255666899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCC--CCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          416 SGISSFANIVSPLIFSPLTALFLSKG--APFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       416 ~~~~~lg~~~gp~i~g~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      ...+.++..++..++|.+.|......  .+....+.+|.+-++..+.+.+...++.
T Consensus       343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~~l~  398 (403)
T PF03209_consen  343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLGRLD  398 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999998752221  1333445567777777777666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.84  E-value=1.3e-19  Score=174.38  Aligned_cols=396  Identities=17%  Similarity=0.207  Sum_probs=257.0

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc-hhHh
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGR-KAML   84 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Gr-k~~l   84 (484)
                      .+|.+++..+..++.....+++.|....|.++.      |.+.+....|++.++..++.+++++.+|.++.|.++ |+.+
T Consensus        32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pl  105 (488)
T KOG2325|consen   32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPL  105 (488)
T ss_pred             chHhHHHHHHHHHHHhhhheEEEeecchhhhhc------CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCH
Confidence            367788888999999999999999999999774      113334567999999999999999999999999997 8999


Q ss_pred             HHHHHHHHHHHHHH-Hhccchh-hHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHH
Q 011514           85 TLPLTLSIIPLAIL-AYRRSIS-FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        85 ~~~~~~~~i~~~~~-~~~~~~~-~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      +.|.++..++.+++ .+..-.+ ..+.++++|++.|++. +.. ....+|+++....++|.|+++....+..+|.++||.
T Consensus       106 i~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~-a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~  183 (488)
T KOG2325|consen  106 IVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNF-AVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT  183 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccH-HHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence            99999999999998 4432222 4689999999999754 555 479999999999999999999999999999999998


Q ss_pred             hhHhh------h-----------hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCcc
Q 011514          163 AARFL------S-----------TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (484)
Q Consensus       163 l~~~l------~-----------~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (484)
                      ++..+      |           +..+-|+.+++.++..+...++++|.++...+++...+            +++ +.+
T Consensus       184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------~~~-~~~  250 (488)
T KOG2325|consen  184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------EEE-KSD  250 (488)
T ss_pred             HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------hhh-ccc
Confidence            87653      1           25678888889999988888889998776544311000            000 000


Q ss_pred             CcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHH----HHHHHHHHHHHHHHH
Q 011514          226 IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFAD----LMLIAGLAGTISQLL  301 (484)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~~~~~~~  301 (484)
                      .+.. +..+. +       .+..+.+++..+...+......+..+......++++.+++-.    .+++.++...... +
T Consensus       251 ~~~~-~~~~~-d-------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~-l  320 (488)
T KOG2325|consen  251 IEKV-KKPKL-D-------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILL-L  320 (488)
T ss_pred             hhhh-ccCCh-h-------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHH-H
Confidence            0000 00011 1       123344555555566666666777777777778888777443    3344444444333 2


Q ss_pred             HHHHhh-hhhcchHHHHHhHHHHHHHHHHHhhc--cch-hhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccch
Q 011514          302 FMPLLA-PILGEAKLLSLGLFAACINMFICSIS--WSA-WVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQV  377 (484)
Q Consensus       302 ~~~~l~-~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  377 (484)
                      ...... .++.+|+.+..+.+.......+....  ... ....++..    -....+    .-.-|+..+.....+. .+
T Consensus       321 ~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~----~~~~~~----~~y~wc~~~~~v~~~~-~l  391 (488)
T KOG2325|consen  321 LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTT----YAGCDF----EEYSWCDTTTAVPLIL-YL  391 (488)
T ss_pred             HHHHHHhhhhccceeeeehHHHHHHhhheeeeecccccccccccccc----ccCcCc----ccchhhccCcccChhh-he
Confidence            212222 23344555555533333333222111  110 00000000    000000    0011111110000000 01


Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ....+++|.+.........+..+|...|.+++..+|+.+..+..+..++|.+...++... ++.+
T Consensus       392 ~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~-g~~~  455 (488)
T KOG2325|consen  392 ISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLS-GPRP  455 (488)
T ss_pred             eehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhc-CccH
Confidence            223345666666677788899999999999999999999999999999999999999886 6665

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.83  E-value=6.8e-20  Score=160.08  Aligned_cols=353  Identities=12%  Similarity=0.055  Sum_probs=234.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI  125 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~  125 (484)
                      ++......++.++|.....+...+.|++.|| +|-|..-++-+....++.++++...-.+.+|.+..+|++.|++++...
T Consensus        75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlA  154 (459)
T KOG4686|consen   75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLA  154 (459)
T ss_pred             ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhh
Confidence            5555566788999999999999999999997 577766666666666777766654333348999999999999876555


Q ss_pred             hHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH----HHhhHhh------------hhHHHHH-HHHHHHHHHHHHHH
Q 011514          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFL------------STTSAFQ-AATIVSMLAAAYMR  188 (484)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig----~~l~~~l------------~~~~~f~-~~~~~~~i~~~~~~  188 (484)
                       .+.+.|..-|+..+|.+.++|+......+|..+-    |.+....            |-...+- ..+...++.++..-
T Consensus       155 -VaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg  233 (459)
T KOG4686|consen  155 -VAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG  233 (459)
T ss_pred             -hhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence             5789999999999999999999999888886543    2222221            1111111 11111222211111


Q ss_pred             HHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHH
Q 011514          189 VFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQAS  268 (484)
Q Consensus       189 ~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (484)
                        .-|++.+..-+                .++..   ..++.+..+.++      -.|.+|.+.++.+++..+...+.+.
T Consensus       234 --~~D~rAerilh----------------~e~g~---~Ge~pkLtdv~~------f~ppfw~~~iicv~yyva~fPFi~l  286 (459)
T KOG4686|consen  234 --LSDDRAERILH----------------LEEGF---LGEEPKLTDVNT------FYPPFWVLVIICVLYYVAWFPFITL  286 (459)
T ss_pred             --hhhhHHHHHHh----------------hhcCc---ccCCcccccccc------cCccHHHHHHHHHHHHHHHHHHhhh
Confidence              11111110000                00000   000111111111      2377888888889998888899999


Q ss_pred             HHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH-HHHHHHHHhhccchhhHHHhhhhHH
Q 011514          269 FLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACINMFICSISWSAWVIKIFFNKVF  347 (484)
Q Consensus       269 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  347 (484)
                      -|.++++++|+|+.+++.+.+.......+.+ .+.|.++||.|++.....+..+ ...+-..+.++.-. .         
T Consensus       287 g~~fF~~rfGlS~~~a~~i~s~vy~Isav~s-pvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls-P---------  355 (459)
T KOG4686|consen  287 GPMFFQKRFGLSAVSAGNILSTVYGISAVLS-PVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLS-P---------  355 (459)
T ss_pred             hHHHHHHhhCCChhhccchhhhhhhhhhhhh-hhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc-H---------
Confidence            9999999999999999999998888888888 5559999999997765544433 33333333222111 1         


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 011514          348 KLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       348 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                                                    ...+.+.|..........+..+...+|+++.|+++|..+.++++|-.+.|
T Consensus       356 ------------------------------y~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~  405 (459)
T KOG4686|consen  356 ------------------------------YTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIP  405 (459)
T ss_pred             ------------------------------HHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHh
Confidence                                          23445777877777777888999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          428 LIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       428 ~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+.|.+.|.-+++..    ....|+..+...+....+.+...++.
T Consensus       406 Iiag~i~d~~g~y~~----le~ffl~~~~~aL~svgil~~~N~kq  446 (459)
T KOG4686|consen  406 IIAGFIADGDGSYDN----LEAFFLIIGLMALTSVGILFYLNKKQ  446 (459)
T ss_pred             hhhheeecCCCchhh----HHHHHHHHHHHHHHHHHHHhheeccc
Confidence            999999998644432    22234444445555555555555443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.71  E-value=1.3e-14  Score=138.66  Aligned_cols=384  Identities=13%  Similarity=0.050  Sum_probs=236.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CchhHh
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l   84 (484)
                      ..|.++.++...+-..+++.-....+..|++.....|   .+.+...+.-+.+.|..-.-+...+.|+++||+ |+|+.+
T Consensus        19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~g---Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI   95 (498)
T COG3104          19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDG---LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTI   95 (498)
T ss_pred             CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcccc---CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence            3677889999999999999877777778877765322   455555556667777766667788899999996 999999


Q ss_pred             HHHHHHHHHHHHHHHhcc--chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCcc--chhHHHHHHHHHHHhHHhHH
Q 011514           85 TLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER--QRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~g~~ig  160 (484)
                      .+|.++..+|.++.+...  +   ...++++-.+.+++. |..-|...+++.|.+|++  +|...+++..++.++|.+++
T Consensus        96 ~lGail~~iGh~~L~~~~~~~---~~gl~i~L~~I~iG~-Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~  171 (498)
T COG3104          96 VLGAILMAIGHLVLAISSVSG---PGGLYIGLALIIVGT-GLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA  171 (498)
T ss_pred             HHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHhcc-ccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence            999999999999999884  5   566777888888644 888899999999999854  47788889999999999999


Q ss_pred             HHhhHhh----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCC-----CCcccccc--------c---ccCCCCC
Q 011514          161 TLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLT-----RPIITEET--------E---GVNQNES  220 (484)
Q Consensus       161 ~~l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~-----~~~~~~~~--------~---~~~~~~~  220 (484)
                      |.+.+.+    ||+..|.++++-..+.+ +.+...|........+.+.     ........        .   .....++
T Consensus       172 p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  250 (498)
T COG3104         172 PIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNT  250 (498)
T ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9887764    78888888885444443 3333333222111111000     00000000        0   0000000


Q ss_pred             CCCcc------------CcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhh-----cCcChhh
Q 011514          221 NSPVK------------IPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-----FHFNKNQ  283 (484)
Q Consensus       221 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~  283 (484)
                      -....            .+..+..+...+    .+|-.....+++...+++..+....+.+..|..+.     +|++. .
T Consensus       251 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~e----r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~v-p  325 (498)
T COG3104         251 FSGVLLVISILIAIIYFAEAFRSPKVFDE----RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEV-P  325 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccHHH----HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceec-C
Confidence            00000            000000000001    00111122333444444444444445555555443     23322 2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcch-------HHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhh
Q 011514          284 FADLMLIAGLAGTISQLLFMPLLAPILGEA-------KLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFIT  356 (484)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~  356 (484)
                      .++..+...+.-++.++++ .++..|.+++       .-..+++.++..+++++........                -+
T Consensus       326 ~~~fQslNp~~Iii~~pI~-a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~----------------~~  388 (498)
T COG3104         326 PAWFQSLNPFFIILFSPIL-AALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFG----------------GP  388 (498)
T ss_pred             HHHHHhhCHHHHHHHHHHH-HHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhc----------------CC
Confidence            3677788888777777555 4444443222       2344556666666665544311000                00


Q ss_pred             hhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011514          357 RKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  431 (484)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g  431 (484)
                      ++..++|++            +...++.+++.-+..|...+++.+..|+...+..++........++.++..+.+
T Consensus       389 ~~~~s~~~l------------il~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~  451 (498)
T COG3104         389 SGLVSVWWL------------VLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG  451 (498)
T ss_pred             CCCcCHHHH------------HHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence            123344433            445568889999999999999999999988888888888877777777766665

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.67  E-value=3.5e-14  Score=133.34  Aligned_cols=342  Identities=12%  Similarity=-0.022  Sum_probs=229.9

Q ss_pred             hHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch--
Q 011514           27 VVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI--  104 (484)
Q Consensus        27 ~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~--  104 (484)
                      ....+..+.+++.  |      +....-|..-+|.+.+....+++-|+.|++|-|...+++..+-.++..+-..+...  
T Consensus        63 ~ya~i~n~~~~~Y--g------s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v  134 (480)
T KOG2563|consen   63 QYAPINNYVNSFY--G------SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV  134 (480)
T ss_pred             eehhHHHHHHHHh--c------chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc
Confidence            3345556666664  3      22344588889999999999999999999999999999999999999887766443  


Q ss_pred             -hhHH--HHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----------hhhHH
Q 011514          105 -SFFY--AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTS  171 (484)
Q Consensus       105 -~~~~--~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----------l~~~~  171 (484)
                       +.++  ....+..+.+... -.....-.....-|+++++|..+..+-..++.+|..+|.++...          ..|..
T Consensus       135 ~~~f~~~l~~~Gq~iaa~Aq-~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~  213 (480)
T KOG2563|consen  135 PPLFRRPLTHTGQSIAAAAQ-PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLF  213 (480)
T ss_pred             cccchhhhhHHhHHHHHHhh-hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHH
Confidence             2244  6667777777533 44433334566778999999999999888888887777665533          23433


Q ss_pred             --HHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhH
Q 011514          172 --AFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLS  249 (484)
Q Consensus       172 --~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (484)
                        .|+....+..+.+.+..+..++.|+.++...                        ....+..++.+..+..++|+++.
T Consensus       214 ~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s------------------------~~~~~~~~f~~si~~~~~n~~F~  269 (480)
T KOG2563|consen  214 FTLFLGVECLAALLLALVLFVFTKKPPTPPSAS------------------------QAALQDASFPKSIKSCFKNRQFI  269 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchh------------------------HhhhhcCcHHHHHHHHHcCccHH
Confidence              3554444544444455454555444332210                        00011234666666688889988


Q ss_pred             HHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch-HHHHHhHHHHHHHHH
Q 011514          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEA-KLLSLGLFAACINMF  328 (484)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~-~~~~~~~~~~~~~~~  328 (484)
                      ...+++.+....+.+..+.+..-+... |++....|+......+++++++ .+++.+.||.+.- ...++......++..
T Consensus       270 il~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga-~~~gii~Dktk~fk~~~~v~~~~~~v~~~  347 (480)
T KOG2563|consen  270 ILAICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGA-LASGIIADKTKKFKLTTLVLYLFALVGTL  347 (480)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHH-HHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            888777776666666666555444444 7777788888888888999998 8889999998764 444444444444422


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      .+......+.                     .             ...+.....++|++.....|....+..|..-|..-
T Consensus       348 ~l~~~t~~~~---------------------~-------------~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E  393 (480)
T KOG2563|consen  348 MLLTCTLFLG---------------------D-------------SVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAE  393 (480)
T ss_pred             HHHHhhccCC---------------------c-------------eEehhhhHHHHHHhhcCCCCcceeeeeeeccccCC
Confidence            2221111110                     0             00023445577888888889888888888877888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ++..|+.+..+++-+++-..+.+...+..
T Consensus       394 ~tSsGll~~~gq~f~~~~~~~~~~~~~~~  422 (480)
T KOG2563|consen  394 GTSSGLLNLSGQIFGVILVFIMGILAEDL  422 (480)
T ss_pred             cccceeEEeehhHHHHHHHHHHHHHhhcc
Confidence            89999999999988888888888887765

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.64  E-value=2.4e-17  Score=165.43  Aligned_cols=407  Identities=14%  Similarity=0.162  Sum_probs=2.4

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (484)
                      +++..++.....+.....+..+-+.+        +++..+.|++.+.+-++..+..++..++.+|..|-|.+-.|.++.+
T Consensus         8 ~~~~~~~q~~~~g~~~~~lttiErRF--------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~   79 (539)
T PF03137_consen    8 LCLLGLFQMMVSGYVNSSLTTIERRF--------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMG   79 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHH
Confidence            34444455444455555555554443        8888899999999999999999999999999888888889999999


Q ss_pred             HHHHHHHhcc----c-------------------------------------------hhhHHHHHHHHHHhhhhccchh
Q 011514           93 IPLAILAYRR----S-------------------------------------------ISFFYAYYALRTLTAMVCEGSI  125 (484)
Q Consensus        93 i~~~~~~~~~----~-------------------------------------------~~~~~~l~~~r~l~G~~~~g~~  125 (484)
                      ++++++++-+    .                                           ...++.++++.++.|+++ ...
T Consensus        80 ~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~-~pl  158 (539)
T PF03137_consen   80 LGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGA-TPL  158 (539)
T ss_dssp             ------------------------------------------------------------------------SSS-----
T ss_pred             HHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccc-cCC
Confidence            9988877521    0                                           012467889999999755 778


Q ss_pred             hHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh--------------------------hhHHHHHHHHHH
Q 011514          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--------------------------STTSAFQAATIV  179 (484)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l--------------------------~~~~~f~~~~~~  179 (484)
                      ++...+|+-|.+++++-+..+|+..+...+|..+|-++|+..                          .|..-|.+.+.+
T Consensus       159 ~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~  238 (539)
T PF03137_consen  159 YTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGIL  238 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999888887651                          145556667766


Q ss_pred             HHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCC-CCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHH
Q 011514          180 SMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNE-SNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFS  258 (484)
Q Consensus       180 ~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (484)
                      .++..+.... .|+..+..++..+.++....+.++.++.+ ++++......+..+++....+.+.+||.+....+.....
T Consensus       239 ~~l~aipl~~-FPk~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~  317 (539)
T PF03137_consen  239 LFLSAIPLFF-FPKKLPGTSERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFE  317 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHc-CCccCCCcccccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHH
Confidence            6665555544 45443333111111111000000000000 000000111122334445556688899999999999999


Q ss_pred             hchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc--chHHHHHhHHHHHHHHHH---Hhhc
Q 011514          259 GLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI---CSIS  333 (484)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~---~~~~  333 (484)
                      .+...++.++.|-|++..++.++.+++.+.....+.+.....+++|++.+|++  .|..+........+..+.   ..+.
T Consensus       318 ~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~  397 (539)
T PF03137_consen  318 SFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFL  397 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            99999999999999999999999999998888877666666689999999875  455555555544444333   1110


Q ss_pred             --cchhh----HHHh-------hhhHHHHH------HHHhhhhh--hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhh
Q 011514          334 --WSAWV----IKIF-------FNKVFKLL------LLSFITRK--QISVHVLLLKILKSIFMQVPYATTAFSVLVVFAT  392 (484)
Q Consensus       334 --~~~~~----~~~~-------~~~~~~~~------~~~f~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  392 (484)
                        ++...    ..|.       .......+      .-..+.++  ....        ...+.......++..+..+...
T Consensus       398 ~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C--------~~~~~~Fl~~~~~~~~~~~~~~  469 (539)
T PF03137_consen  398 GCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDC--------CNKLIPFLILLFILSFFTFMSQ  469 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCccc--------ccccHHHHHHHHHHHHHHHhcc
Confidence              11000    0000       00000000      00000000  0000        0000111222223334444455


Q ss_pred             hHHHHHHhcccCCCchhHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 011514          393 PSFRSIVSKQVGPNEQGKAQGCISGISS-FANIVSPLIFSPLTALF  437 (484)
Q Consensus       393 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~-lg~~~gp~i~g~l~~~~  437 (484)
                      .......-+.+|+++|+.+.|+...+.+ +|.+-||.++|.+.|..
T Consensus       470 ~p~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  470 VPSTLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             ----------------------------------------------
T ss_pred             cchheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            5555666789999999999999987755 67899999999999873

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.60  E-value=8.7e-13  Score=130.28  Aligned_cols=379  Identities=15%  Similarity=0.152  Sum_probs=220.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-----CchhHhHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHhhhh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-----GRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMV  120 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-----Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~  120 (484)
                      +.++.+.....+...++..+ .|++|.++|.+     .||+-++++.++.+++...++..++. .......+.-++..++
T Consensus        21 ~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g   99 (433)
T PF03092_consen   21 GLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFG   99 (433)
T ss_pred             CCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHH
Confidence            44555556667777777654 78899999976     35566777888777766666654431 1133444444555543


Q ss_pred             ccchhhHhhhHHHhhcCC--ccchhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHHHHHHHHHHHHHHHHHHHcccC
Q 011514          121 CEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (484)
Q Consensus       121 ~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe~  194 (484)
                      . .....++.+.+.|...  +++|+...+.......+|.+++..++|.+    +++..|.+.+++..+..+...+..+|.
T Consensus       100 ~-a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~  178 (433)
T PF03092_consen  100 Y-AFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEER  178 (433)
T ss_pred             H-HHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhc
Confidence            3 5666789999999884  44578888888888999999998888774    568888888878777776666666662


Q ss_pred             CCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHH-HHHHHhchhhhhHHHHHHHH
Q 011514          195 VPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAV-VAFFSGLSEGGMQASFLYFL  273 (484)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  273 (484)
                      +..++.+             ....+++... ......++..++.++ ..++|.++...+ ..++............-.+.
T Consensus       179 ~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~  243 (433)
T PF03092_consen  179 KVRPADE-------------VFSFGKEEVP-CLFGSFREQLSELWR-ALQQRAIWQPILFFIFFFNLPPSISSASSFYFQ  243 (433)
T ss_pred             cccccch-------------hhcccccccc-hhhHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHhccCCCCccEEEEE
Confidence            2111110             0000000000 000001112223233 334466665555 33333322222111111122


Q ss_pred             hhhcC---cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhh--HHHhhhhHHH
Q 011514          274 KAQFH---FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV--IKIFFNKVFK  348 (484)
Q Consensus       274 ~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  348 (484)
                      .+..+   +++...+.+..+..++..++..+. .+...+..-|+++....++.++..+.-...-..+.  .+.       
T Consensus       244 ~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y-~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi-------  315 (433)
T PF03092_consen  244 TDALGGPHFSPSFYGTLSIVGSIASLLGILLY-RKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGI-------  315 (433)
T ss_pred             eccccccccCHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCc-------
Confidence            33345   888888888866667777776444 55555556677776666555443332111111110  000       


Q ss_pred             HHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 011514          349 LLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL  428 (484)
Q Consensus       349 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~  428 (484)
                             ++.                .....-..+..+......-......+|..|+...|+.+++..++.++|..++..
T Consensus       316 -------~d~----------------~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~  372 (433)
T PF03092_consen  316 -------PDQ----------------WFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSST  372 (433)
T ss_pred             -------CCe----------------EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence                   000                001223345555556666667778899999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCC
Q 011514          429 IFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTPA  473 (484)
Q Consensus       429 i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (484)
                      ++..+.+..+-.+..|.-.....++..++.++.+.+...++++.+
T Consensus       373 lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  373 LGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            999999887422323322233445555555666666666666443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10054 putative transporter; Provisional

Probab=99.58  E-value=1.8e-13  Score=134.54  Aligned_cols=171  Identities=12%  Similarity=0.109  Sum_probs=136.7

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.++.+.+..++...+.....+++|.|+++.+|++..+.|+..+...+...+.+ +..|+++||+|+|+.+..+..+..
T Consensus         6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~k~~~~~~~~~~~   84 (395)
T PRK10054          6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFS-LGFGILADKFDKKRYMLLAITAFA   84 (395)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCcchhHHHHHHHHH
Confidence            3567777788888888888889999999999899999999999999999999988 667999999999999999888888


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      ++.+.+.+.++.+.                                      ......+.+.+.+...+...++..|..|
T Consensus        85 ~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~  126 (395)
T PRK10054         85 SGFIAIPLVNNVTL--------------------------------------VVLFFALINCAYSVFSTVLKAWFADNLS  126 (395)
T ss_pred             HHHHHHHHHhHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            88877777666544                                      1222234455556667788899999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHH
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI  463 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (484)
                      +++|+++.|+.+...++|..++|.+.+.+.+.  +++.       .|.+.+++.++..+
T Consensus       127 ~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~--g~~~-------~f~~~~~~~~i~~i  176 (395)
T PRK10054        127 STSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQ--SINL-------PFWLAAICSAFPLV  176 (395)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCc-------HHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753  5554       34555555444433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.55  E-value=6e-12  Score=116.44  Aligned_cols=274  Identities=13%  Similarity=0.076  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHH
Q 011514           14 FVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSII   93 (484)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i   93 (484)
                      .....+...+..+..|.+-.+.++.        +.+..+++.+........++.+++.|.++||+|||+.-+.-+++.++
T Consensus        40 l~vY~La~~aDWLQGpY~Y~LY~~y--------g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~  111 (354)
T PF05631_consen   40 LLVYLLAMAADWLQGPYLYALYESY--------GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSL  111 (354)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            3344556677788888766655554        44445668888899999999999999999999999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHH-hhcC----CccchhHHHHHHH-HHHHhHHhHHHHhhHh-
Q 011514           94 PLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV-ADNI----SERQRASAFGILL-GVLSASFVCGTLAARF-  166 (484)
Q Consensus        94 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i-~~~~----~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~-  166 (484)
                      +++. -..++   ++.++++|++.|+.. .....+-.++. .|.-    |++..+..++... ..+++-.+.+.+++.. 
T Consensus       112 scl~-k~~~~---~~~L~~GRvlgGiaT-SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l  186 (354)
T PF05631_consen  112 SCLT-KHSSN---YPVLLLGRVLGGIAT-SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVL  186 (354)
T ss_pred             HHHH-Hhccc---cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHH
Confidence            9964 44577   899999999999865 55555666664 4432    2333344444333 2223333333344433 


Q ss_pred             ---h--hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHH
Q 011514          167 ---L--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (484)
Q Consensus       167 ---l--~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (484)
                         .  |-..||.....+..+..+++...-+|...+..++                           .+..++.++..+.
T Consensus       187 ~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~---------------------------~~~~~~~~~a~~~  239 (354)
T PF05631_consen  187 ADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS---------------------------SSLSGSFREAWRA  239 (354)
T ss_pred             HHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCCcccc---------------------------cchHHHHHHHHHH
Confidence               2  2378999988888777777766566654332211                           1122356667777


Q ss_pred             hhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      +.++|+++.+.+...++....+.+...+++-++.. + +..-.|.+++......++++.+.....+++......+.....
T Consensus       240 i~~d~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlGS~lf~~l~s~~~~~e~~l~~v~~  317 (354)
T PF05631_consen  240 ILSDPRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLGSSLFSRLLSKSLRPESLLRYVFA  317 (354)
T ss_pred             HHcCchhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88889999888888888777776555544444421 1 233469999999999999995553345555554455544455


Q ss_pred             HHHHHHHH
Q 011514          322 AACINMFI  329 (484)
Q Consensus       322 ~~~~~~~~  329 (484)
                      +.++++.+
T Consensus       318 ~aa~~l~~  325 (354)
T PF05631_consen  318 VAAVSLAI  325 (354)
T ss_pred             HHHHHHHH
Confidence            44444443

>TIGR00889 2A0110 nucleoside transporter

Probab=99.53  E-value=5.6e-13  Score=131.82  Aligned_cols=184  Identities=13%  Similarity=0.109  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCC---chhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDE---CSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~---~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+.+..++............+.+.++.   +.++   .+.+....|...++..++..++.++.|+++||+|||+++..+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~  288 (418)
T TIGR00889       212 IFFFFSMLLGAPLQITNIFGNGFLHEF---GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSL  288 (418)
T ss_pred             eHHHHHHHHHhHHHHHHHhHHHHHHHh---cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            344455555444455556667777664   3221   1234456799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHH-HHHHhHHhHHHHhhHh
Q 011514           89 TLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (484)
Q Consensus        89 ~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~  166 (484)
                      ++.+++..+..... +....+.+++.+++.|++. +...+....++.|..|+++|++++++.+ ...++|..+||.++|.
T Consensus       289 ~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~-~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~  367 (418)
T TIGR00889       289 VAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAF-DFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGV  367 (418)
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99998887777643 2112456677899999754 6666788899999999999999999997 6788999999999876


Q ss_pred             h----------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 011514          167 L----------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (484)
Q Consensus       167 l----------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~  199 (484)
                      +          ||+..|.+.+++.++..++..+++||+.+..+
T Consensus       368 l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~~  410 (418)
T TIGR00889       368 MVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAIK  410 (418)
T ss_pred             HHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCCC
Confidence            3          48899999988888888888888998755433

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.51  E-value=1.1e-13  Score=114.69  Aligned_cols=133  Identities=22%  Similarity=0.309  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhc
Q 011514           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (484)
Q Consensus        57 ~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~  136 (484)
                      .+.+.++..+++++.|++.||+|||+.+..+.....++.+.....++   .+.+.+.+++.|++. +...+...+++.|.
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~   79 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN---ITVLIIARFLQGFGA-AFALVAGAALIADI   79 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence            34557788899999999999999999999999999999998888888   788889999999755 66668899999999


Q ss_pred             CCccchhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHHHHHHHHHHHHHHHHHHHccc
Q 011514          137 ISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLKD  193 (484)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lpe  193 (484)
                      .|+++|++..+..+....+|..++|.+++.+    +|++.+++.+.+..+..+...+..||
T Consensus        80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999999999888764    78899998887777777776666665

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.51  E-value=1.2e-12  Score=132.44  Aligned_cols=169  Identities=15%  Similarity=0.111  Sum_probs=114.1

Q ss_pred             HHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHH-
Q 011514           19 LWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI-   97 (484)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~-   97 (484)
                      ............+|.+.++..  +     .+....++..+...++..++.+..|+++||+|||+.+..+.+...++... 
T Consensus       261 ~~~~~~~~~~~~~p~~l~~~~--g-----~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~  333 (490)
T PRK10642        261 ATNVTYYMLLTYMPSYLSHNL--H-----YSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPA  333 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            334445555667787775432  2     22334466777888999999999999999999999988877654433322 


Q ss_pred             --HHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-----hhH
Q 011514           98 --LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STT  170 (484)
Q Consensus        98 --~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-----~~~  170 (484)
                        ...+++   ...+++++++.|++. +...+....++.|.+|++.|+++.+.......++..++|.+.+.+     +|+
T Consensus       334 ~~~~~~~~---~~~~~~~~~~~g~~~-~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~  409 (490)
T PRK10642        334 FILINSNV---IGLIFAGLLMLAVIL-NCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLM  409 (490)
T ss_pred             HHHHhCCC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch
Confidence              222344   566778888888644 444456778889999999999999975444555556777766653     367


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 011514          171 SAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (484)
Q Consensus       171 ~~f~~~~~~~~i~~~~~~~~lpe~~~~~~  199 (484)
                      .+++...+..++..+.. +++||+|++..
T Consensus       410 ~~~~~~~~~~~i~~~~~-~~~pes~~~~~  437 (490)
T PRK10642        410 MPAYYLMVVAVIGLITG-VTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence            77766665555554444 45799987644

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.50  E-value=9e-13  Score=132.69  Aligned_cols=276  Identities=14%  Similarity=0.187  Sum_probs=205.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc-------------------c----
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR-------------------S----  103 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~-------------------~----  103 (484)
                      +++..+.|++.+.+-++..+...+..+..-|..|-|.+-+|.++.+++.+++++-+                   +    
T Consensus       128 ~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~  207 (735)
T KOG3626|consen  128 KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSL  207 (735)
T ss_pred             CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCcccc
Confidence            55566679999999999999999999999999999999999999999999888631                   0    


Q ss_pred             --------------------------hhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHH
Q 011514          104 --------------------------ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASF  157 (484)
Q Consensus       104 --------------------------~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~  157 (484)
                                                ...+..++++.++.|++. ....+...+|+-|...+++-+..+|+......+|.
T Consensus       208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~-Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGP  286 (735)
T KOG3626|consen  208 SFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGA-TPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGP  286 (735)
T ss_pred             chhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCC-CCCccCCCccccccccccCCcHHHHHHHHHHHhhh
Confidence                                      002346788999999865 77788999999999999999999999999999999


Q ss_pred             hHHHHhhHhh-----------------------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccc
Q 011514          158 VCGTLAARFL-----------------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG  214 (484)
Q Consensus       158 ~ig~~l~~~l-----------------------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~  214 (484)
                      ++|-++|+++                       .|+.-|++.+.+.++..+..++ +|...++..++.+   ..+  .+.
T Consensus       287 aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~~~~~~~---~~~--~~~  360 (735)
T KOG3626|consen  287 AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFF-FPKELPKSQKRKR---ARD--LHV  360 (735)
T ss_pred             HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHh-CcccCccccccch---hhh--hcc
Confidence            9998888762                       2666788888777777766655 6655443322100   000  000


Q ss_pred             cCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHH
Q 011514          215 VNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLA  294 (484)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  294 (484)
                      .+++++..+......++.+++....+.+.+||.+....+...+......++.+++|-|++..+|.++..+..+....++.
T Consensus       361 ~k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp  440 (735)
T KOG3626|consen  361 LKTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVP  440 (735)
T ss_pred             cccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhh
Confidence            00000001111111122234555566688899999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHHHHHHhhhhhc--chHHHHHhHHHHHHHHHH
Q 011514          295 GTISQLLFMPLLAPILG--EAKLLSLGLFAACINMFI  329 (484)
Q Consensus       295 ~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~  329 (484)
                      ....+.+++|++.+|++  .|....+.++...+.++.
T Consensus       441 ~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  441 AAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             hhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence            88888899999999875  455555555544444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.50  E-value=9.4e-13  Score=132.17  Aligned_cols=173  Identities=14%  Similarity=0.118  Sum_probs=141.0

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhh--cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHhHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLF  321 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~  321 (484)
                      ++.++.+....++..+++++...++|.|+++.  +|++..+.+...+.......++. +.+|+++|| +|||+.+..+..
T Consensus         9 p~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~-~~~G~laDr~~G~~~~l~~~~~   87 (475)
T TIGR00924         9 PKPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLT-SVGWWFGDRVWGTKKTMVLGGI   87 (475)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHhhcchHHHHHHHHH
Confidence            45666777778888889999999999999887  89999999999999999999998 777999999 899999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          322 AACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +.+++.+++.+.++.+.                                      +.....+.+++.+...|...+++.+
T Consensus        88 ~~~~g~~~~~~~~~~~~--------------------------------------~~~~~~l~g~g~g~~~~~~~~~~a~  129 (475)
T TIGR00924        88 VLMLGHFMLAMSIYPDL--------------------------------------IFYGLGTIAVGSGLFKANPSSMVGK  129 (475)
T ss_pred             HHHHHHHHHHhcccHhH--------------------------------------HHHHHHHHHhccccccCCHHHHHHH
Confidence            99999888887665444                                      1334446788888888999999999


Q ss_pred             ccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          402 QVGPNE---QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       402 ~~p~~~---~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      .+|+++   |++++++.+...++|..+||.+.|.+.+.. +++.       .|.+.++..+++.+.
T Consensus       130 ~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~-g~~~-------~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       130 LYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENY-GYHV-------GFNLAAVGMVIGLLT  187 (475)
T ss_pred             hcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhc-ChHH-------HHHHHHHHHHHHHHH
Confidence            998754   888999999999999999999999999875 5544       345544444444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.50  E-value=1.7e-12  Score=134.76  Aligned_cols=139  Identities=23%  Similarity=0.132  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHH
Q 011514           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (484)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~  132 (484)
                      ..+...+..++.+++.++.|+++||+|||++++.+.++.+++.++.++.++   ...+++.+++.|++. +...+...++
T Consensus       597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s---~~~ll~~~~l~g~~~-~~~~~~~~a~  672 (742)
T TIGR01299       597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS---ESAMIALLCLFGGLS-IAAWNALDVL  672 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            345566778999999999999999999999999999999999999999888   666777788888655 4555789999


Q ss_pred             HhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 011514          133 VADNISERQRASAFGILLGVLSASFVCGTLAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~  196 (484)
                      ++|++|.++|++++|+..+...+|.++||.+++.+   +...+|++.+++.++..++.. ++||++.
T Consensus       673 ~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~  738 (742)
T TIGR01299       673 TVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRG  738 (742)
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence            99999999999999999999999999999998754   346678887766666555544 5788654

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.48  E-value=2.5e-12  Score=124.38  Aligned_cols=165  Identities=19%  Similarity=0.317  Sum_probs=131.9

Q ss_pred             HHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhh
Q 011514          253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI  332 (484)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  332 (484)
                      +..++..+.........|.++.+.+|.++.+.++..+...+...+.+ +..|++.||+|||+.+..+..+.+++.+...+
T Consensus         3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~   81 (352)
T PF07690_consen    3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFS-PFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF   81 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHH-HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence            45556666666677777767777789999999999999999999999 66699999999999999999998888555554


Q ss_pred             ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHH
Q 011514          333 SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQ  412 (484)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~  412 (484)
                      .++.+.                                      +....++.|++.+...+...+++.|..|+++|+++.
T Consensus        82 ~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  123 (352)
T PF07690_consen   82 ASNFWL--------------------------------------LLIARFLLGIGSGFFSPASNALIADWFPPEERGRAF  123 (352)
T ss_dssp             HCCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHH
T ss_pred             hhhHHH--------------------------------------Hhhhccccccccccccccccccccccchhhhhhhcc
Confidence            444444                                      255556889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          413 GCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       413 g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      |..+....+|..++|.+++.+.+.. +.+.       .+.+.+++.++..+.
T Consensus       124 ~~~~~~~~~g~~~g~~l~~~l~~~~-~~~~-------~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  124 GILSAGFSLGSILGPLLGGFLISYF-GWRW-------AFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHC-HHCC-------HHHHHHHHHHHHHHH
T ss_pred             ccccchhhhhhhcccchhhhhhhcc-cccc-------ccccccchhhhhhhh
Confidence            9999999999999999999998765 5544       456666666655543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.48  E-value=2.8e-12  Score=126.24  Aligned_cols=148  Identities=11%  Similarity=0.080  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (484)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  328 (484)
                      +......++...+.....++++.|+++.+|+++.+.|...+...+...+.+ ++.|+++||+|+|+.+..+..+.+++.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~-~~~G~l~dr~g~k~~l~~~~~~~~~~~~   91 (400)
T PRK11646         13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLG-IFGGAIADRFGAKPMIVTGMLMRAAGFA   91 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHH-hhhhHHHHHhCchHHHHHHHHHHHHHHH
Confidence            345566777777778888899999988889999999999999999888888 7779999999999999999999999988


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      .+...++.+.                                      +.....+.+++.+...|...+.+.+..|+++|
T Consensus        92 ~~~~~~~~~~--------------------------------------l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~  133 (400)
T PRK11646         92 TMAIAHEPWL--------------------------------------LWLSCILSGLGGTLFDPPRTALVIKLIRPHQR  133 (400)
T ss_pred             HHHHhccHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            8877766555                                      23344467777777888889999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      +++.|+.+...++|..+||.++|.+.+
T Consensus       134 ~~a~~~~~~~~~~g~~ig~~l~g~l~~  160 (400)
T PRK11646        134 GRFFSLLMMQDSAGAVIGALLGSWLLQ  160 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999984

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.46  E-value=3e-12  Score=124.44  Aligned_cols=151  Identities=14%  Similarity=0.107  Sum_probs=124.5

Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  330 (484)
                      .....++..+........+|.|..+. +.++.+.++..+...++..+.+ +..|+++||+|||+.+..+..+..++....
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAG-TGSASVLSLAALAGMLPYVVLS-PIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHH-HhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            44566666677777788888888875 8999999999999999999998 666999999999999998888877776666


Q ss_pred             hhcc-----chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          331 SISW-----SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       331 ~~~~-----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      .+..     +.+.                                      +.....+.+++.+...+...+++.|..|+
T Consensus        82 ~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~  123 (365)
T TIGR00900        82 PFVALLGGLNIWQ--------------------------------------VYVLAGILAIAQAFFTPAYQAMLPDLVPE  123 (365)
T ss_pred             HHHHHcCCCcHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            5544     3333                                      13444577888888899999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ++|+++.|..+....+|..++|.+.+.+.+.. +.+.
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-g~~~  159 (365)
T TIGR00900       124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATL-GIKW  159 (365)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-hHHH
Confidence            99999999999999999999999999998875 5443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.45  E-value=6.9e-10  Score=105.76  Aligned_cols=370  Identities=13%  Similarity=0.040  Sum_probs=224.5

Q ss_pred             chhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHh
Q 011514            5 KEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAML   84 (484)
Q Consensus         5 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l   84 (484)
                      +|++....++.-.|+..+  -=.-|.+.+|+.+. .++.++.+++.    -+.-...-.++...++...+.|..|.|+++
T Consensus         2 ~w~~~~~llc~~gf~~~f--rPsEPfl~~yL~~~-~kn~T~~qv~~----~i~Pv~tYSyl~~l~~vflltd~l~Ykpvi   74 (412)
T PF01770_consen    2 SWKKITLLLCLFGFFKEF--RPSEPFLTPYLTGP-DKNFTEEQVNN----EIYPVWTYSYLAFLLPVFLLTDYLRYKPVI   74 (412)
T ss_pred             CchHHHHHHHHHHHHHhc--CCCCccchHHHcCC-ccCCCHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            455555555554444332  22233444443321 01333333332    334444556667778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           85 TLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      +++.+...+...+..+.++   ...+-+..+..|+.. +. ..+..+|+-...|+++-.++.+...++..+|..++.++|
T Consensus        75 il~~~~~i~t~~lll~~~s---v~~mq~~q~~yg~~~-a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lg  149 (412)
T PF01770_consen   75 ILQALSYIITWLLLLFGTS---VLAMQLMQFFYGLAT-AA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLG  149 (412)
T ss_pred             HHHHHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHH-HH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999   899999999999755 44 457889999999999999999999999999988888887


Q ss_pred             Hhh------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCC---CCCCCCCCcccccccccCCCCCCC-----CccCcccC
Q 011514          165 RFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPND---DDDDLTRPIITEETEGVNQNESNS-----PVKIPVCK  230 (484)
Q Consensus       165 ~~l------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  230 (484)
                      -.+      +.+...++......++.+. .+++|.+++..   ++..+..+....+.+..++.+++.     +......+
T Consensus       150 Qllvs~~~~sy~~L~~isl~~~~~a~~~-~~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (412)
T PF01770_consen  150 QLLVSFGGVSYFQLNYISLASVSLALLI-ALFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSS  228 (412)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHHcCCCCcccceeccCccccccccccccccccccccccccccCcccccch
Confidence            653      3455555555344444433 45588766532   111111110001111111111110     00001011


Q ss_pred             CCCchHHH---HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhh--cCcChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011514          231 KIPSIRDL---ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ--FHFNKNQFADLMLIAGLAGTISQLLFMPL  305 (484)
Q Consensus       231 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (484)
                      ....++..   ++...++|.++...+-..+...++....++.....++.  -+-+..-.|.+-....+.+.++. +..|+
T Consensus       229 ~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~a-l~~g~  307 (412)
T PF01770_consen  229 RKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAA-LLAGY  307 (412)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHH-HHHhH
Confidence            11112222   23345678888777777777767766666665544443  12233335777778888888887 66688


Q ss_pred             hhhhhcchHHHH--HhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHH
Q 011514          306 LAPILGEAKLLS--LGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTA  383 (484)
Q Consensus       306 l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (484)
                      +..++.+..-+.  ....+.+..++++...++.|.                                      .....++
T Consensus       308 v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv--------------------------------------~Y~~yIi  349 (412)
T PF01770_consen  308 VKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWV--------------------------------------CYAGYII  349 (412)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--------------------------------------HHHHHHH
Confidence            866665544333  333445566666777777776                                      1223335


Q ss_pred             HHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 011514          384 FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  426 (484)
Q Consensus       384 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~g  426 (484)
                      +........+.....+++....+.-|-++|+++++..+-+.+-
T Consensus       350 f~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQtil  392 (412)
T PF01770_consen  350 FRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALVLQTIL  392 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHHHHHhe
Confidence            5555666777777778888888889999998888776555443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.45  E-value=4.3e-12  Score=125.75  Aligned_cols=175  Identities=11%  Similarity=0.134  Sum_probs=133.8

Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHHHhHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLSLGLFA  322 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~~~~~~  322 (484)
                      +++.++..+...+...+.+++...++|.|+++.+|+++.+.+...........++. +++|+++||+ |||+.+.++..+
T Consensus         7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~-ligG~LaDRilGrrr~iliG~il   85 (493)
T PRK15462          7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTP-ILGGFLADKVLGNRMAVMLGALL   85 (493)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccCcHHHHHHHHHH
Confidence            34667777777778888888999999999999899999999999888888878887 7889999998 999999999999


Q ss_pred             HHHHHHHHhhccch-hhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          323 ACINMFICSISWSA-WVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      ..++.+++...... ..                                      ......+...+.+...+...++++|
T Consensus        86 ~~lg~lll~~~~~~~~~--------------------------------------~~l~l~li~iG~G~~~~~~~alv~e  127 (493)
T PRK15462         86 MAIGHVVLGASEIHPSF--------------------------------------LYLSLAIIVCGYGLFKSNVSCLLGE  127 (493)
T ss_pred             HHHHHHHHHHhhcchhH--------------------------------------HHHHHHHHHHhcccccccHHHHHHH
Confidence            88887766543211 11                                      0222224445566666777889999


Q ss_pred             ccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHH
Q 011514          402 QVGPN--EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS  465 (484)
Q Consensus       402 ~~p~~--~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (484)
                      .+|++  +|.+++++.....++|+.++|.+.|++.+.. +++.       .|.+.++..+++.+..
T Consensus       128 lfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~-Gw~~-------~F~iaaigm~l~li~~  185 (493)
T PRK15462        128 LYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEY-SWAM-------GFGLAAVGMIAGLVIF  185 (493)
T ss_pred             HCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhh-ChHH-------HHHHHHHHHHHHHHHH
Confidence            99875  6999999999999999999999999998865 5544       3455544444444443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.44  E-value=3.5e-12  Score=126.53  Aligned_cols=184  Identities=13%  Similarity=0.057  Sum_probs=138.6

Q ss_pred             HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Q 011514          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSL  318 (484)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~  318 (484)
                      ++.++++|.++......++..+.........|.+.++. +.++.+.|...+...+...+++ ++.|+++||+|||+.+..
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~g~~~~~~~l~~~~~~-~~~G~l~dr~g~~~~l~~   87 (417)
T PRK10489         10 LSLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMM-TGSTLQVGLSVTLTGGAMFIGL-MVGGVLADRYDRKKLILL   87 (417)
T ss_pred             HHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHHHHH-HhhHHHhhhcCCceEEEe
Confidence            34466778888888888888888777888888888775 7799999999999999999998 667999999999998887


Q ss_pred             hHHHHHHHHHHHhh-----ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          319 GLFAACINMFICSI-----SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       319 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      +..+.+++......     .++.+.                                      +.....+.+++.+...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~~~g~~~~~~~~  129 (417)
T PRK10489         88 ARGTCGLGFIGLALNAFLPEPSLLA--------------------------------------IYLLGLWDGFFGSLGVT  129 (417)
T ss_pred             hHHHHHHHHHHHHHHHHcCCCcHHH--------------------------------------HHHHHHHHHHHHHHHHH
Confidence            77766665554432     122222                                      13334466777777778


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      ...+.+.+.+|+++|+++.++.+...++|..+||.++|.+.+.. ++++       .+.+.++..+++.+..++.++
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~-~~~~-------~~~~~~~~~~~~~~~~~~l~~  198 (417)
T PRK10489        130 ALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAG-GVAW-------NYGLAAAGTFITLLPLLRLPA  198 (417)
T ss_pred             HHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHH-hhHH-------HHHHHHHHHHHHHHHHHhCCC
Confidence            88889999999999999999999999999999999999998875 4444       334444444444444445444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.43  E-value=8.6e-12  Score=123.41  Aligned_cols=170  Identities=19%  Similarity=0.231  Sum_probs=134.5

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHH
Q 011514           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (484)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~   97 (484)
                      +......+...+.++.+..+..   .+. +......|.+.++..++..++.+.+|+++||+|||+.+..+.....++.+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  304 (408)
T PRK09874        229 LIIQVATGSIAPILTLYVRELA---GNV-SNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIP  304 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh---ccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH
Confidence            3444455566777888877752   221 222234577788888999999999999999999999999998888888877


Q ss_pred             HHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh----hhHHHH
Q 011514           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL----STTSAF  173 (484)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l----~~~~~f  173 (484)
                      ..+.++   .+.+.+.+++.|++. +...|...+.+.|..|+++|++.++..+....+|..+||.+++.+    +|+..|
T Consensus       305 ~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f  380 (408)
T PRK09874        305 MSFVQT---PLQLGILRFLLGAAD-GALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVF  380 (408)
T ss_pred             HHHhcc---HHHHHHHHHHHHhhh-HhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHH
Confidence            777777   677788999999755 667788888999999999999999999999999999999998864    789999


Q ss_pred             HHHHHHHHHHHHHHHHHcccCC
Q 011514          174 QAATIVSMLAAAYMRVFLKDDV  195 (484)
Q Consensus       174 ~~~~~~~~i~~~~~~~~lpe~~  195 (484)
                      ++.+++.++..+..++..++++
T Consensus       381 ~~~~~~~l~~~~~~~~~~~~~~  402 (408)
T PRK09874        381 LVTAGVVLFNAVYSWNSLRRRR  402 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999888887777666554433

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=99.43  E-value=9.1e-10  Score=106.88  Aligned_cols=376  Identities=13%  Similarity=0.086  Sum_probs=208.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |..+.++...++...+.-+---..|.++.+...   +. =.   ..+...-.-.+..++.++..|.+.||..|+++...+
T Consensus         2 ~~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p---~s-Ll---~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~   74 (432)
T PF06963_consen    2 RALWRLYLSHFLSTWGDRMWEFAVPLFLISIFP---GS-LL---PVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTS   74 (432)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CC-cH---HHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHH
Confidence            456778999999999999988889998887631   11 11   223333445566778899999999999999987766


Q ss_pred             HHHHH----HHHHHHH--hcc-c-----hhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcC------CccchhHHHHHH
Q 011514           88 LTLSI----IPLAILA--YRR-S-----ISFFYAYYALRTLTAMVCEGSINCLALAYVADNI------SERQRASAFGIL  149 (484)
Q Consensus        88 ~~~~~----i~~~~~~--~~~-~-----~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~------~~~~r~~~~~~~  149 (484)
                      .+..-    +++.+..  +.. +     ......+++.-.+.|....-.......+.=-||.      +++++.+.++.+
T Consensus        75 l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~m  154 (432)
T PF06963_consen   75 LVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATM  154 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHH
Confidence            55432    2222222  111 1     1112222333333331110111111122223442      355677788888


Q ss_pred             HHHHHhHHhHHHHhhHhh----hhHHHHHHHHHHHHHHHHHHHHHcc----cCCCCCCCCCCCCCcccccccccCCCCCC
Q 011514          150 LGVLSASFVCGTLAARFL----STTSAFQAATIVSMLAAAYMRVFLK----DDVPNDDDDDLTRPIITEETEGVNQNESN  221 (484)
Q Consensus       150 ~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~~~i~~~~~~~~lp----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (484)
                      .-.-.+..++||++.|.+    +.+....+.+...++....=++++.    ..|.-.+++++.++....+.+   +.+++
T Consensus       155 RRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~---~~~~~  231 (432)
T PF06963_consen  155 RRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEE---SSSES  231 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCcccccccccc---ccccc
Confidence            888888899999888774    4455555555566655544333222    222111111000000000000   00000


Q ss_pred             CCccCcc---cCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHH
Q 011514          222 SPVKIPV---CKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTIS  298 (484)
Q Consensus       222 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  298 (484)
                      .......   .+.....++.++...+++.+...+...+ ..+..-++......|+... |+++...|.+-+...+.++.+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alal-LY~TVLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~g  309 (432)
T PF06963_consen  232 SSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALAL-LYFTVLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLG  309 (432)
T ss_pred             cchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHH-HHHHHhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHH
Confidence            0000000   0001112223444555555544444333 3344555677788889888 999999999999999999988


Q ss_pred             HHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHh---hccchh-hHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhc
Q 011514          299 QLLFMPLLAPILGEAKLLSLGLFAACINMFICS---ISWSAW-VIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIF  374 (484)
Q Consensus       299 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  374 (484)
                      . ++.+++.+|+|..|.-.++.......+.+..   +.+... .                    ..+...          
T Consensus       310 T-~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~--------------------~~s~~~----------  358 (432)
T PF06963_consen  310 T-WVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFS--------------------SISAYL----------  358 (432)
T ss_pred             H-HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCch--------------------hhHHHH----------
Confidence            8 7779999999998877777665443332221   222211 0                    000000          


Q ss_pred             cchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHH
Q 011514          375 MQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPL  428 (484)
Q Consensus       375 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~  428 (484)
                        ++....+--+|.=..-....-+++|.+|+++||+..|+-+..+++...+--.
T Consensus       359 --l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~  410 (432)
T PF06963_consen  359 --LLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV  410 (432)
T ss_pred             --HHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence              1222333334444455566778899999999999999999999987766443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.43  E-value=6.4e-12  Score=123.20  Aligned_cols=166  Identities=14%  Similarity=0.078  Sum_probs=127.5

Q ss_pred             HHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhc
Q 011514          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (484)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  333 (484)
                      ..+.............|.+.++ +|.++.+.++..+...++..+++ ++.|++.||+|||+.+..+..+..++.+.....
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~   90 (385)
T TIGR00710        13 LSILGPLGIDMYLPAFPEIAAD-LSTPASIVQMTLTLYLLGFAAGQ-LLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS   90 (385)
T ss_pred             HHHHHHHHHHHhcccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444555566665554 69999999999999999999998 777999999999999999998888888888777


Q ss_pred             cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514          334 WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  413 (484)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  413 (484)
                      ++.+.                                      +.....+.+++.+...+...+++.|..|+++|+++.|
T Consensus        91 ~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (385)
T TIGR00710        91 NNIET--------------------------------------LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYS  132 (385)
T ss_pred             ccHHH--------------------------------------HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            66555                                      2344457888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          414 CISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       414 ~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ..+....++..++|.+.+.+.+.. +++.       .+.+.++..++......+
T Consensus       133 ~~~~~~~~g~~~g~~~~~~l~~~~-~~~~-------~~~~~~~~~~~~~~~~~~  178 (385)
T TIGR00710       133 ILMPVLALAPAVAPLLGGYILVWL-SWHA-------IFAFLSLAGILLSALIFF  178 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CHHH-------HHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988864 4433       344444444444433333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.42  E-value=8.4e-12  Score=125.41  Aligned_cols=160  Identities=15%  Similarity=0.072  Sum_probs=133.1

Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHhHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFA  322 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~  322 (484)
                      ++|.++..+...+...+++++...+++.|+++.+|++..+.++....+.....+.. +++|+++|| +|||+++..+..+
T Consensus        12 ~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~-~~~G~laDr~~G~r~~~~~g~~~   90 (489)
T PRK10207         12 QPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLI-SIGGYVGDHLLGTKRTIVLGAIV   90 (489)
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-hhHHHhhhhccchHHHHHHHHHH
Confidence            34667777778888889999999999999999999999998888888877777776 678999999 9999999999999


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ..++.+.+.+..+...          +                           +.....+.+++.+...|...+++.|.
T Consensus        91 ~~~g~~~~~~~~~~~~----------l---------------------------l~~~~~l~~ig~g~~~~~~~~li~~~  133 (489)
T PRK10207         91 LAIGYFMTGMSLLKPD----------L---------------------------IFIALGTIAVGNGLFKANPASLLSKC  133 (489)
T ss_pred             HHHHHHHHHHhccchh----------H---------------------------HHHHHHHHHhccccccCCHHHHHHHh
Confidence            9999888877654332          0                           12344467888888889999999999


Q ss_pred             cCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          403 VGPN--EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       403 ~p~~--~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +|++  +|+++++......++|..+||.++|++.++. ++++
T Consensus       134 ~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~-gw~~  174 (489)
T PRK10207        134 YPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKF-GYSV  174 (489)
T ss_pred             cCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhh-ChHH
Confidence            9877  4578999999999999999999999999876 5443

>PRK12382 putative transporter; Provisional

Probab=99.42  E-value=1e-11  Score=122.20  Aligned_cols=153  Identities=15%  Similarity=0.053  Sum_probs=121.2

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +.++......++...........+|.++++.+|.|+.+.|...+...+...+.+ +..|+++||+|||+.+..+.+...+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~-~~~G~l~Dr~g~r~~l~~~~~~~~~   93 (392)
T PRK12382         15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTR-GYAGRLADQYGAKRSALQGMLACGL   93 (392)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHh-hhhhHHHHhhcchHHHHHHHHHHHH
Confidence            555666666666666677777888888888889999999999999999999999 6669999999999999888777665


Q ss_pred             HHHHHh---hcc-----chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHH
Q 011514          326 NMFICS---ISW-----SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRS  397 (484)
Q Consensus       326 ~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  397 (484)
                      +.+...   ...     +.+.                                      +...-.+.|.+.+...+...+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~--------------------------------------l~~~r~l~G~~~~~~~~~~~~  135 (392)
T PRK12382         94 AGLAYLLAAILPVSAPFKFAL--------------------------------------LVVGRLILGFGESQLLTGALT  135 (392)
T ss_pred             HHHHHHhhhccccchhHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence            543322   111     1111                                      133344778888877888888


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ++.+..|+++|+++.|..+.....+..++|.+++.+.+..
T Consensus       136 ~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~  175 (392)
T PRK12382        136 WGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHF  175 (392)
T ss_pred             HHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            8899999999999999999999999999999999988764

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.42  E-value=1.2e-11  Score=123.32  Aligned_cols=154  Identities=11%  Similarity=0.127  Sum_probs=124.0

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +....+..++..+.........|.+.++ +|+++.+.+...+...++..+++ +..|++.||+|+|+.+.++..+..++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~~~~~~~~~~~~~  102 (434)
T PRK11663         25 LITMYLGYALFYFTRKSFNAAMPEMLAD-LGLSRSDIGLLATLFYITYGVSK-FVSGIVSDRSNARYFMGIGLIATGIIN  102 (434)
T ss_pred             HHHHHHHHHHHHHhhhhHHHhhHHHHHh-cCCCHHHHHHHHHHHHHHHHHHH-hhhhHHHhhcCCchhHHHHHHHHHHHH
Confidence            3344455555555555666778877766 69999999999999999999998 777999999999999999999999888


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      ++..+.++.+.                                      +.....+.+++.+...+...+++.+.+|+++
T Consensus       103 ~~~~~~~~~~~--------------------------------------l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~  144 (434)
T PRK11663        103 ILFGFSSSLWA--------------------------------------FALLWVLNAFFQGWGWPVCAKLLTAWYSRTE  144 (434)
T ss_pred             HHHHHHhHHHH--------------------------------------HHHHHHHHHHHHHccchHHHHHHHHhCCHHH
Confidence            88877766555                                      1222335677777777888899999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      |++++|+.+....+|..++|.+.+.+.+.. +++.
T Consensus       145 rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~-gw~~  178 (434)
T PRK11663        145 RGGWWAIWNTAHNVGGALIPLVVGAIALHY-GWRY  178 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cHHH
Confidence            999999999999999999999999998865 5544

>PRK03545 putative arabinose transporter; Provisional

Probab=99.42  E-value=1.2e-11  Score=121.49  Aligned_cols=151  Identities=11%  Similarity=0.132  Sum_probs=120.7

Q ss_pred             HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhH
Q 011514          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKV  346 (484)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (484)
                      ...|.+ .+.+|.++.+.++..+...++..+++ +..+++.||+|||+.+..+..+.+++.+...+.++.+.        
T Consensus        30 ~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------   99 (390)
T PRK03545         30 GLLSDI-AQSFHMQTAQVGLMLTIYAWVVALMS-LPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTV--------   99 (390)
T ss_pred             cchHHH-HhHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHH--------
Confidence            345654 45579999999999999998888888 55589999999999999999999999888888877666        


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 011514          347 FKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  426 (484)
Q Consensus       347 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~g  426 (484)
                                                    +...-.+.|++.+...+...+++.+..|+++|+++.|+.+....++..++
T Consensus       100 ------------------------------l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig  149 (390)
T PRK03545        100 ------------------------------LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLG  149 (390)
T ss_pred             ------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHH
Confidence                                          13333477777777788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHH
Q 011514          427 PLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS  465 (484)
Q Consensus       427 p~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (484)
                      |.+.+.+.+.. +++.       .|.+.+++.++.....
T Consensus       150 ~~l~~~l~~~~-gw~~-------~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        150 LPLGRVIGQYL-GWRT-------TFLAIGGGALITLLLL  180 (390)
T ss_pred             hhHHHHHHHHh-cHHH-------HHHHHHHHHHHHHHHH
Confidence            99999988865 5554       3455555444443333

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=5.8e-12  Score=124.25  Aligned_cols=160  Identities=15%  Similarity=0.093  Sum_probs=127.2

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      ++++....+..++..+........+|.++++.+|.|+.+.|...+...+...+.+ +..|+++||+|||+++..+....+
T Consensus        14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSR-PHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhc-hhhHhHHhccCCcchHHHHHHHHH
Confidence            4667777788888888888888899999988889999999999999999999999 667999999999999999888776


Q ss_pred             HHHHHHhhcc--chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          325 INMFICSISW--SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       325 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ++........  +.+.    ......                            +...-++.|++.+...+...++..+.
T Consensus        93 ~~~~~~~~~~~~~~~~----~~~~~~----------------------------l~~~r~l~G~~~~~~~~~~~~~~~~~  140 (399)
T PRK05122         93 LSGLLYLLAGLLAAWP----VLSLLL----------------------------LLLGRLLLGIGESLAGTGSILWGIGR  140 (399)
T ss_pred             HHHHHHHHhhhhhccc----hhHHHH----------------------------HHHHHHHHHhhHHhhcchHHHHHHhh
Confidence            6654443321  1111    000000                            13344478888888888888888999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      .|+++|+++.+........|..+||.+++.+.+..
T Consensus       141 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~  175 (399)
T PRK05122        141 VGALHTGRVISWNGIATYGALAIGAPLGVLLYHWG  175 (399)
T ss_pred             cChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999998865

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.41  E-value=2.3e-11  Score=115.18  Aligned_cols=177  Identities=17%  Similarity=0.136  Sum_probs=153.1

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      ..++.+.++.|.....+......+|...+| +|.+..++|...+.++.+..++. +....+.||++||+++...+.++.+
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~d-l~vs~~~aG~lis~yAl~~ai~a-p~l~~lt~r~~Rr~lLl~~l~lFi~   90 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAAD-LGVSEGAAGQLITAYALGVALGA-PLLALLTGRLERRRLLLGLLALFIV   90 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHcccchHHHHHHHHHHHHH
Confidence            456677788888888888888999997776 49999999999999999999999 5558999999999999999999999


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +.++..+.++.+.          +++.|+                            +.++..+...+...+...+.+||
T Consensus        91 ~n~l~alAp~f~~----------Ll~aR~----------------------------~~g~a~G~f~~i~~~~a~~lvpp  132 (394)
T COG2814          91 SNLLSALAPSFAV----------LLLARA----------------------------LAGLAHGVFWSIAAALAARLVPP  132 (394)
T ss_pred             HHHHHHHhccHHH----------HHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999999999888          555555                            88899999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      ++|+++.++..+...++..+|.+++.++-|.+ +++.       .|.+.+.+.+++....+..-+
T Consensus       133 ~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~-GWR~-------~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         133 GKRGRALALVFTGLTLATVLGVPLGTFLGQLF-GWRA-------TFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccHHHHHHHHh-hHHH-------HHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999999999997 7776       456666666666655554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.41  E-value=3.6e-12  Score=126.60  Aligned_cols=161  Identities=12%  Similarity=0.043  Sum_probs=126.2

Q ss_pred             hhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHH
Q 011514           29 PAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFY  108 (484)
Q Consensus        29 ~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~  108 (484)
                      ..+|.+..+..  +  +.+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++..+.+++++   .+
T Consensus       244 ~~~~~~~~~~~--~--~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~---~~  316 (420)
T PRK09528        244 QQFPNFFASFF--A--TPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG---PL  316 (420)
T ss_pred             HHHHHHHHHHH--h--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc---HH
Confidence            34566665542  1  11333456799999999999999999999999999999999999999999888988888   77


Q ss_pred             HHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHH-HHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHHHHH
Q 011514          109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLA  183 (484)
Q Consensus       109 ~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~i~  183 (484)
                      .+++.+++.|+.. +...+....++.|..|++.|+...+. .+....+|..+||.+.|.    .||+..|...+++.++.
T Consensus       317 ~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~  395 (420)
T PRK09528        317 EVSILKLLHAFEV-PFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLF  395 (420)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            7888899999644 55556778899999999998887655 567788899999988876    48999999888887777


Q ss_pred             HHHHHHHcccCCCC
Q 011514          184 AAYMRVFLKDDVPN  197 (484)
Q Consensus       184 ~~~~~~~lpe~~~~  197 (484)
                      .++.++.++++++.
T Consensus       396 ~~~~~~~~~~~~~~  409 (420)
T PRK09528        396 TLISVFTLSGDREL  409 (420)
T ss_pred             HHHHHHHhcCCchh
Confidence            76666666654443

>PRK10504 putative transporter; Provisional

Probab=99.41  E-value=1.4e-11  Score=124.33  Aligned_cols=156  Identities=13%  Similarity=0.033  Sum_probs=129.5

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +.++...+..++............|.+.++ +|.++.+.++..+...++..++. ++.|+++||+|||+.+..+..+..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~   87 (471)
T PRK10504         10 WQLWIVAFGFFMQSLDTTIVNTALPSMAQS-LGESPLHMHMVIVSYVLTVAVML-PASGWLADRVGVRNIFFTAIVLFTL   87 (471)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHHHHHHHH
Confidence            456667777777777777888889998876 69999999999888888888888 6779999999999999988888887


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +.+...+.++.+.                                      +.....+.|++.+...|...+.+.|.+|+
T Consensus        88 ~~~~~~~~~~~~~--------------------------------------l~~~~~l~g~~~~~~~~~~~~~~~~~~~~  129 (471)
T PRK10504         88 GSLFCALSGTLNE--------------------------------------LLLARVLQGVGGAMMVPVGRLTVMKIVPR  129 (471)
T ss_pred             HHHHHHHhCCHHH--------------------------------------HHHHHHHHHhhhHHHHHHHHHHHHHHcCH
Confidence            7777766665554                                      24445578888888889999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ++|+++.|..+...++|..++|.+.|.+.+.. +++.
T Consensus       130 ~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~-gw~~  165 (471)
T PRK10504        130 EQYMAAMTFVTLPGQVGPLLGPALGGLLVEYA-SWHW  165 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-cHHH
Confidence            99999999999999999999999999999875 4443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.40  E-value=2e-11  Score=119.94  Aligned_cols=138  Identities=13%  Similarity=0.064  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhh
Q 011514          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFF  343 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  343 (484)
                      .....+|.+.+ .+|+++.+.+...+...++..+++ +..+++.||+|||+.+..+..+.+++.+...+.++.+.     
T Consensus        38 ~~~~~l~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~-----  110 (394)
T PRK10213         38 LPVSLLTPMAQ-DLGISEGVAGQSVTVTAFVAMFAS-LFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSL-----  110 (394)
T ss_pred             HHHhhHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHH-----
Confidence            34445666555 469999999999999999999998 66699999999999999999999988888877766666     


Q ss_pred             hhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 011514          344 NKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN  423 (484)
Q Consensus       344 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~  423 (484)
                           +                            ...-.+.|++.+...+...+++.|.+|+++|+++.+......+++.
T Consensus       111 -----l----------------------------~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~  157 (394)
T PRK10213        111 -----L----------------------------LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL  157 (394)
T ss_pred             -----H----------------------------HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence                 2                            3344478888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcCCC
Q 011514          424 IVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       424 ~~gp~i~g~l~~~~~~~~~  442 (484)
                      .++|.+++.+.+.. +++.
T Consensus       158 ~ig~~l~~~l~~~~-gw~~  175 (394)
T PRK10213        158 VIAAPLGSFLGELI-GWRN  175 (394)
T ss_pred             HHHHHHHHHHHhhc-CHHH
Confidence            99999999998875 5444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.39  E-value=2e-11  Score=119.55  Aligned_cols=169  Identities=12%  Similarity=0.072  Sum_probs=135.5

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +.++......+............+|.+.++ +|.+..+.++..+...++..+++ +..|++.||+|||+.+..+..+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~   80 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHD-VGISIPAAGHMISYYALGVVVGA-PIIALFSSRYSLKHILLFLVALCVI   80 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHH-cCCCHHHHhHHHHHHHHHHHHHH-HHHHHHHccCccHHHHHHHHHHHHH
Confidence            456666777777777777777788876554 69999999999999999999999 6779999999999999999999999


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +.++..+.++.+.                                      +...-.+.|++.+...+.....+.+..|+
T Consensus        81 ~~~l~~~~~~~~~--------------------------------------l~~~r~l~G~~~~~~~~~~~~~~~~~~~~  122 (382)
T PRK10091         81 GNAMFTLSSSYLM--------------------------------------LAIGRLVSGFPHGAFFGVGAIVLSKIIKP  122 (382)
T ss_pred             HHHHHHHhCcHHH--------------------------------------HHHHHHHHHhhhHHHHHHHHHHHHHhCCh
Confidence            9988888887766                                      23344477888787778788888999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHH
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAF  462 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  462 (484)
                      ++|+++.|.......++..++|.+.+.+.+.. +++.       .|.+.++..++..
T Consensus       123 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~-gwr~-------~f~~~~~~~~~~~  171 (382)
T PRK10091        123 GKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF-SWRY-------TFLLIAVFNIAVL  171 (382)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhccHHHHHhhhc-cHHH-------HHHHHHHHHHHHH
Confidence            99999999999999999999999999988764 4443       4455554444433

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.39  E-value=3.5e-11  Score=119.00  Aligned_cols=134  Identities=9%  Similarity=-0.039  Sum_probs=114.1

Q ss_pred             hhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHh
Q 011514          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIF  342 (484)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (484)
                      .......| .+++.+|++..+.++..+...++..+++ +..+++.||+|||+.+..+..+..++.....+.++.+.    
T Consensus        25 ~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~----   98 (412)
T TIGR02332        25 INIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICG-IPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPES----   98 (412)
T ss_pred             hhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHH-hhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHH----
Confidence            33444444 6777889999999999999999999999 66699999999999999999999999888888777666    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                            +                            ...-.+.|++.+...|....++.|.+|+++|+++.|+.+....+|
T Consensus        99 ------l----------------------------~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  144 (412)
T TIGR02332        99 ------L----------------------------YLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVT  144 (412)
T ss_pred             ------H----------------------------HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence                  2                            333347888888888988899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 011514          423 NIVSPLIFSPLTAL  436 (484)
Q Consensus       423 ~~~gp~i~g~l~~~  436 (484)
                      ..++|.+.+.+.+.
T Consensus       145 ~~~~~~~~~~l~~~  158 (412)
T TIGR02332       145 MALGLILSGYILAL  158 (412)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999988753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.38  E-value=3.2e-11  Score=118.19  Aligned_cols=152  Identities=8%  Similarity=-0.001  Sum_probs=130.3

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.++.+....++...........+|.+.++. |.|..+.|+..+...++..+++ +..++++||+|||+.+..+..+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-~~s~~~~G~~~s~~~l~~~~~~-~~~g~l~dr~g~k~~~~~~~~~~~   82 (381)
T PRK03633          5 TRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQE-HLPTWQVGVVSSSYFTGNLVGT-LLAGYVIKRIGFNRSYYLASLIFA   82 (381)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888888888888999999998875 9999999999999999999999 667999999999999999999998


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      ++.....+.++.+.                                      +....++.|++.+...+...+.+.+..+
T Consensus        83 ~~~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~~~~~~~  124 (381)
T PRK03633         83 AGCAGLGLMVGFWS--------------------------------------WLAWRFVAGIGCAMIWVVVESALMCSGT  124 (381)
T ss_pred             HHHHHHHHhccHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            88888877776655                                      2334447788888888887777888889


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +++|+++.|..+...++|..+||.+.+.+.+.
T Consensus       125 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        125 SRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999988765

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.38  E-value=2.6e-11  Score=119.10  Aligned_cols=149  Identities=15%  Similarity=0.159  Sum_probs=120.7

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|+++.+.+..++..+.........+...+ .+|.++.+.++..+.+.+...+.. ++.|++.||+|||+++..+..+.+
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~l~~~l~~-~~~G~laDr~grr~vl~~~~~~~~   79 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLK-ELHYPDWSQPLLQMFFVLAYIVLA-PFVGAFADSFPKGRVMFIANGIKL   79 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHH-hhhhHhhhccCCchhhHHHHHHHH
Confidence            356677777777777666555555555554 458888888999999999999998 667999999999999999998887


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      ++.+.+....+.                                         ...-.+.|++.+...|...+++.|.+|
T Consensus        80 ~~~~~~~~~~~~-----------------------------------------~~~r~l~G~~~a~~~pa~~a~i~~~~~  118 (393)
T PRK11195         80 LGCLLMLFGIHP-----------------------------------------LLAYGLVGIGAAAYSPAKYGILTELLP  118 (393)
T ss_pred             HHHHHHHHHHHH-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            776655443221                                         112236788999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +++|+++.|..+....++..+||.++|.+.+.
T Consensus       119 ~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~  150 (393)
T PRK11195        119 GEKLVKANGWMEGSTIAAILLGTVLGGALADP  150 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999986

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.37  E-value=4.3e-11  Score=116.55  Aligned_cols=149  Identities=17%  Similarity=0.152  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      ++...+..+...........+.|.++++.+|+|+.+.++..+...++..++. +..|+++||+|||+.+..+..+..++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~i~~   81 (366)
T TIGR00886         3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLR-IILGFLVDKFGPRYTTTLSLLLLAIPC   81 (366)
T ss_pred             hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4455556666666666777788877888889999999999999999999999 777999999999999999999999988


Q ss_pred             HHHhhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          328 FICSISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       328 ~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      +...+.+ +.+.                                      +.....+.|++.+. .+....++.+..|++
T Consensus        82 ~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  122 (366)
T TIGR00886        82 LWAGLAVQSYSV--------------------------------------LLLLRLFIGIAGGS-FASCMPWISFFFPKK  122 (366)
T ss_pred             HHHHHHhhhHHH--------------------------------------HHHHHHHHHHhchh-hHhHHHHHHHhcCHh
Confidence            8887776 5554                                      13333356666443 455678889999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +|+++.++.....++|..+++.+.+.+.+.
T Consensus       123 ~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~  152 (366)
T TIGR00886       123 IQGTALGLAAGWGNMGGGVAQFVMPPIIGS  152 (366)
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999888888877764

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.37  E-value=3.4e-11  Score=121.71  Aligned_cols=160  Identities=13%  Similarity=0.040  Sum_probs=125.5

Q ss_pred             ccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHhHHH
Q 011514          244 SSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFA  322 (484)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~  322 (484)
                      +++.++..+...++..+.++....+++.|+++.+|++..+.+...+.......... .+.|+++|| +|||+.+..+..+
T Consensus        19 ~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~-~~~G~LaDr~~G~r~~~~~g~~~   97 (500)
T PRK09584         19 QPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLV-AIGGWLGDKVLGTKRVIMLGAIV   97 (500)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccchHHHHHHHHHH
Confidence            34568888888888888989999999999999999999988777776655444444 567999999 5999999999999


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      ..++..++.+..+...          .                           +.....+.+++.+...+...+++.+.
T Consensus        98 ~~ig~~l~~~~~~~~~----------~---------------------------l~~~~~l~gig~g~~~~~~~~l~~~~  140 (500)
T PRK09584         98 LAIGYALVAWSGHDAG----------I---------------------------VYMGMATIAVGNGLFKANPSSLLSTC  140 (500)
T ss_pred             HHHHHHHHHHhcccHH----------H---------------------------HHHHHHHHHHhhhcccCCHHHHHHHh
Confidence            9888877776543222          0                           12334467788887888888899999


Q ss_pred             cCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          403 VGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       403 ~p~~~--~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +|+++  +++++++.+...++|..+||.+.|++.+.. +++.
T Consensus       141 f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~-g~~~  181 (500)
T PRK09584        141 YEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKY-GWSV  181 (500)
T ss_pred             cCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhh-CHHH
Confidence            98653  456788999999999999999999999875 5554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.37  E-value=2.9e-11  Score=119.40  Aligned_cols=150  Identities=12%  Similarity=0.068  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +....+..+...+.........|.+ ++.+|.++.+.++..+...++..+++ +..|++.||+|||+.+..+..+.+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~   91 (405)
T TIGR00891        14 FSAAWLGWLLDAFDFFLVALVLAEV-AGEFGLTTVDAASLISAALISRWFGA-LMFGLWGDRYGRRLPMVTSIVLFSAGT   91 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhhHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3444455555555555555556654 55579999999999999999999999 667999999999999999998888888


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      +...+.++.+.                                      +.....+.|++.+...+...+++.|..|+++
T Consensus        92 ~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~  133 (405)
T TIGR00891        92 LACGFAPGYIT--------------------------------------MFIARLVIGIGMGGEYGSSAAYVIESWPKHL  133 (405)
T ss_pred             HHHHHhccHHH--------------------------------------HHHHHHHHHhhhhhhhHHHHHHHHHhCChhh
Confidence            88877766555                                      2334447888888888999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      |+++.++.+....+|..+++.+.+.+.+..
T Consensus       134 ~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~  163 (405)
T TIGR00891       134 RNKASGLLISGYAVGAVVAAQVYSLVVPVW  163 (405)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999988764

>PRK11043 putative transporter; Provisional

Probab=99.37  E-value=4.3e-11  Score=118.14  Aligned_cols=164  Identities=13%  Similarity=0.082  Sum_probs=121.4

Q ss_pred             hhhhhHHHHHHH--HhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhh
Q 011514          261 SEGGMQASFLYF--LKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (484)
Q Consensus       261 ~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (484)
                      .+.....+.|.+  +++.+|.++.+.+...+...++..+++ +..|+++||+|||+.+..+..+..++.+...+.++.+.
T Consensus        18 ~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~   96 (401)
T PRK11043         18 GFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQ-LLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQ   96 (401)
T ss_pred             HHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            333334444443  455679999999999999999999998 77799999999999999998888888877777666555


Q ss_pred             HHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHH
Q 011514          339 IKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  418 (484)
Q Consensus       339 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  418 (484)
                                                            +.....+.|++.+...+...+.+.|.+|++++++..+..+..
T Consensus        97 --------------------------------------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (401)
T PRK11043         97 --------------------------------------LLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPL  138 (401)
T ss_pred             --------------------------------------HHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                                                  133334666776666777778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          419 SSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       419 ~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      ..++..++|.+.+.+.+.. +.+.       .+.+.+++.++..+..+..+++
T Consensus       139 ~~~~~~~g~~i~~~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~~~~  183 (401)
T PRK11043        139 VALSPALAPLLGAWLLNHF-GWQA-------IFATLFAITLLLILPTLRLKPS  183 (401)
T ss_pred             HHHHHHHHHHHHHHHHhcC-ChHH-------HHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999998865 4443       3444444444444444444443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.37  E-value=3.8e-11  Score=121.70  Aligned_cols=171  Identities=15%  Similarity=0.071  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +....+..++...-........|.+.++ +|.+..+.++..+.+.++..... +..|+++||+|||+.+..+..+..++.
T Consensus         8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~-l~~s~~~~~~~~~~~~l~~~~~~-~~~G~l~D~~Grk~~l~~~~~~~~~~~   85 (495)
T PRK14995          8 LVIIVLVYIPVAIDATVLHVAAPTLSMT-LGASGNELLWIIDIYSLVMAGMV-LPMGALGDRIGFKRLLMLGGTLFGLAS   85 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            4445556666666666677778887655 59999999999999999888888 666999999999999999999999999


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc-CCC
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV-GPN  406 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-p~~  406 (484)
                      +..+..++.+.          +                            ...-.+.|++.+...|.....+.+.. |++
T Consensus        86 ~~~~~a~~~~~----------l----------------------------i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~  127 (495)
T PRK14995         86 LAAAFSPTASW----------L----------------------------IATRALLAIGAAMIVPATLAGIRATFTEEK  127 (495)
T ss_pred             HHHHHcCCHHH----------H----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            99988887776          2                            33344788888888887777776654 678


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      +|+++.|+......+|..+||.++|.+.++. ++++       .|.+...+.++..+...
T Consensus       128 ~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~-gwr~-------~f~i~~~~~~~~~~l~~  179 (495)
T PRK14995        128 QRNMALGVWAAVGSGGAAFGPLVGGILLEHF-YWGS-------VFLINVPIVLVVMGLTA  179 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ChHH-------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875 5544       34554444444443333

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.37  E-value=5.2e-11  Score=117.15  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHH
Q 011514           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (484)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~   97 (484)
                      +............+|.+.++..       +.+..+.|++.+...+..+++.++.|+++||+|||+.+..+.....+....
T Consensus       226 ~~~~~~~~~~~~~~p~~l~~~~-------~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~  298 (393)
T PRK15011        226 TLMWGTNSLYIINMPLFIINEL-------HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAG  298 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence            3333334445566777776543       334445677777777888888999999999999999888777666665555


Q ss_pred             HHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHH
Q 011514           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSAF  173 (484)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f  173 (484)
                      ....++   .+.+++.+++.++.. +...+....+..|..|+ +|+++.+..+...++|..+||.+++.    .+|+.+|
T Consensus       299 ~~~~~~---~~~~l~~~~l~~~~~-g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~  373 (393)
T PRK15011        299 MLMAHS---PAILLGLQLLNAIYI-GILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVF  373 (393)
T ss_pred             HHHHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            555666   566677888877543 55555667788898875 69999999998899999999988876    4789999


Q ss_pred             HHHHHHHHHHHHHHHHHccc
Q 011514          174 QAATIVSMLAAAYMRVFLKD  193 (484)
Q Consensus       174 ~~~~~~~~i~~~~~~~~lpe  193 (484)
                      ++.+++.++..+..+ +.||
T Consensus       374 ~~~~~~~~~~~~~~~-~~~~  392 (393)
T PRK15011        374 WFALVMIIATLFCLL-RIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHH-hhcC
Confidence            888767666555554 4565

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.36  E-value=4.2e-11  Score=118.42  Aligned_cols=160  Identities=19%  Similarity=0.157  Sum_probs=119.8

Q ss_pred             HHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHH
Q 011514           18 FLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAI   97 (484)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~   97 (484)
                      +............+|.+.++.        +.+....|...+...++..++.++.|+++||+|||+.+..+.....++.+.
T Consensus       230 ~~~~~~~~~~~~~~p~~~~~~--------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        230 FFTLIVLYFLLNWLPSLLVGQ--------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            333333444444567777654        333445688889999999999999999999999999998877777777777


Q ss_pred             HHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-----hhHHH
Q 011514           98 LAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-----STTSA  172 (484)
Q Consensus        98 ~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-----~~~~~  172 (484)
                      ..+.++   .+.+.+..++.|++. +...+...+++.|.+|+++|++..++.+....+|..+||.+++.+     +|...
T Consensus       302 ~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~  377 (406)
T PRK11551        302 LAAAPS---FAGMLLAGFAAGLFV-VGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGV  377 (406)
T ss_pred             HHhcCc---HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHH
Confidence            777777   566667777778654 445567889999999999999999999999999999999999875     34555


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 011514          173 FQAATIVSMLAAAYMRV  189 (484)
Q Consensus       173 f~~~~~~~~i~~~~~~~  189 (484)
                      ++......++..+..++
T Consensus       378 ~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        378 IGASIPVILVAALAALL  394 (406)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            66555455554444444

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.36  E-value=5.5e-11  Score=116.98  Aligned_cols=152  Identities=11%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      |.+.......+....+.......+|.+.++ +|.++.+.++..+...++..+++ +..|+++||+|||+.+..+.....+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~i   80 (392)
T PRK10473          3 RFLLCSFALVLLYPAGIDMYLVGLPRIAAD-LNASEAQLHIAFSVYLAGMAAAM-LFAGKIADRSGRKPVAIPGAALFII   80 (392)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhHhHHHHHhCChHHHHHHHHHHHH
Confidence            444455555555555656666677776665 59999999999999998888888 6679999999999999999988888


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +.......++.+.                                      +.....+.|.+.+...+...+++.|..|+
T Consensus        81 ~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~i~~~~~~  122 (392)
T PRK10473         81 ASLLCSLAETSSL--------------------------------------FLAGRFLQGIGAGCCYVVAFAILRDTLDD  122 (392)
T ss_pred             HHHHHHHhCcHHH--------------------------------------HHHHHHHHHhhhhHHHHHHHHHHHHHcCH
Confidence            8888777665544                                      13333467777777788888999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ++|+++.|..+....++..++|.+++.+.+..
T Consensus       123 ~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~  154 (392)
T PRK10473        123 RRRAKVLSLLNGITCIIPVLAPVLGHLIMLKF  154 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            99999999999999999999999998887654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.36  E-value=3.2e-11  Score=122.26  Aligned_cols=153  Identities=14%  Similarity=0.050  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (484)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  328 (484)
                      ..+.+..++..+.........|.+.++ +|.++.+.++..+...++..++. ++.+++.||+|||+.+..+..+..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~   82 (485)
T TIGR00711         5 IVLMLGTFMAVLDSTIVNVAIPTIAGD-LGSSLSQVQWVITSYMLANAISI-PLTGWLAKRFGTRRLFLISTFAFTLGSL   82 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChhhhhHHHHHHHHHHHHHH-HhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            334445555555555666677776655 69999999999999999999998 7779999999999999999999999988


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      .....++.+.                                      +.....+.|++.+...+...+++.|.+|+++|
T Consensus        83 ~~~~~~~~~~--------------------------------------l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r  124 (485)
T TIGR00711        83 LCGVAPNLEL--------------------------------------MIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR  124 (485)
T ss_pred             HHhCcCCHHH--------------------------------------HHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHH
Confidence            8888776665                                      24444578888888899999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +++.++.+....+|..++|.++|.+.++. +.+.
T Consensus       125 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-~w~~  157 (485)
T TIGR00711       125 GRAMAIWGLTVLVAPALGPTLGGWIIENY-HWRW  157 (485)
T ss_pred             HHHHHHHHHHHHHHhhhhhccHhHhccCc-Ccee
Confidence            99999999999999999999999998865 5554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK03699 putative transporter; Provisional

Probab=99.36  E-value=5.3e-11  Score=117.16  Aligned_cols=156  Identities=12%  Similarity=0.016  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      ..+...+..++...........+|.+.+ .+|+|..+.+...+...++..+++ ++.+++.||+|||+.+..+..+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~g~~~~~i~~-~~~~s~~~~g~~~s~~~~~~~i~~-~~~g~l~dr~g~r~~~~~~~~~~~i~   85 (394)
T PRK03699          8 LTWISFLSYALTGALVIVTGMVMGPIAE-YFNLPVSSMSNTFTFLNAGILISI-FLNAWLMEIIPLKRQLIFGFALMILA   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHH-HhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3444444455544444455566777554 569999999999999999989988 77799999999999999999888888


Q ss_pred             HHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          327 MFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .....+.++.+.                                      +.....+.|++.+...+...+.+.|..|++
T Consensus        86 ~~l~~~~~~~~~--------------------------------------~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~  127 (394)
T PRK03699         86 VAGLMFSHSLAL--------------------------------------FSIAMFVLGVVSGITMSIGTFLITHVYEGK  127 (394)
T ss_pred             HHHHHHcchHHH--------------------------------------HHHHHHHHHHhhHhhccchhHHhhhhcccc
Confidence            888877766555                                      133344777777777778888899999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +|+++.+..+....++..++|.+.+.+.+...+.+.
T Consensus       128 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~  163 (394)
T PRK03699        128 QRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYW  163 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHH
Confidence            999999999999999999999999888764324443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.34  E-value=5.1e-11  Score=114.94  Aligned_cols=168  Identities=23%  Similarity=0.251  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchh-HhHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKA-MLTLP   87 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~-~l~~~   87 (484)
                      .++......+.............|.+.++..       +.+..+.++..+...++..++.++.|++.||+|||+ .+..+
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  248 (352)
T cd06174         176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVL-------GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIG  248 (352)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3445555666666777777788888877643       334456789999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      ..+..++.+.....++   .+...+..++.|++. +...+...+++.|..|+++|++.++..+...++|..++|.+.+.+
T Consensus       249 ~~~~~i~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l  324 (352)
T cd06174         249 LLLAALGLLLLALAPS---LALLLVALLLLGFGL-GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLL  324 (352)
T ss_pred             HHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888   778888999999755 666789999999999999999999999999999999999998864


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHH
Q 011514          168 ----STTSAFQAATIVSMLAAAYM  187 (484)
Q Consensus       168 ----~~~~~f~~~~~~~~i~~~~~  187 (484)
                          +|+..+.+.+++.++..+..
T Consensus       325 ~~~~~~~~~~~~~~~~~~i~~i~~  348 (352)
T cd06174         325 LDTGGYGGVFLILAALALLAALLL  348 (352)
T ss_pred             hcccCcchHHHHHHHHHHHHHHHh
Confidence                78999998887777765554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.33  E-value=8e-11  Score=115.02  Aligned_cols=169  Identities=12%  Similarity=0.158  Sum_probs=122.9

Q ss_pred             HHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH-HhHHHHHHHHHHH
Q 011514          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-LGLFAACINMFIC  330 (484)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-~~~~~~~~~~~~~  330 (484)
                      .+..++..++.......+|.|+++.+|.++.+.|...+...+...+.+ ...|+++||+|||+.+. .+.....++....
T Consensus         3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVS-QLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            345677777888888999999988889999999999999999999998 55699999999888654 4555555666666


Q ss_pred             hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhH
Q 011514          331 SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  410 (484)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  410 (484)
                      .+.++.+.                                      +.....+.+.+.+...|...++..|..|++.|++
T Consensus        82 ~~~~~~~~--------------------------------------l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~  123 (375)
T TIGR00899        82 AWNRNYFL--------------------------------------LLVLGVLLSSFASTANPQLFALAREHADRTGREA  123 (375)
T ss_pred             HhcchHHH--------------------------------------HHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence            66665544                                      1222234555555667777888888888777765


Q ss_pred             H--HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          411 A--QGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       411 ~--~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      +  .+......++|..++|.+.+.+.+.. +++.       .|.+.+++.++..+..++
T Consensus       124 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~~-~~~~-------~f~~~~~~~~~~~~~~~~  174 (375)
T TIGR00899       124 VMFSSVMRAQISLAWVIGPPLAFWLALGF-GFTV-------MFLTAALAFVLCGVLVWL  174 (375)
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHHHhc-ccHH-------HHHHHHHHHHHHHHHHHH
Confidence            4  67888888999999999999998865 5544       446655555544444433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.32  E-value=3.9e-11  Score=117.10  Aligned_cols=164  Identities=16%  Similarity=0.224  Sum_probs=122.2

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (484)
                      .+.+....+.............+.+.++.        +.+..+.+...+...++..++.++.|+++||+|||+.+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  278 (377)
T TIGR00890       207 FWVLYLSFFLNAVSGLLLIGLYKPYGQSL--------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFG  278 (377)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            33444444444444444445556665544        2334456888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh---
Q 011514           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF---  166 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~---  166 (484)
                      +..++.++..+.++.. ...++...++.|++. +...+...+++.|.+|+++|+++.++.+....+|..++|.+.+.   
T Consensus       279 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  356 (377)
T TIGR00890       279 ISAVGMAAMLFIPMLN-DVLFLATVALVFFTW-GGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALT  356 (377)
T ss_pred             HHHHHHHHHHHcccch-hHHHHHHHHHHHHHh-ccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9988888887776521 233445566777654 44556678899999999999999999999999999999988876   


Q ss_pred             -hhhHHHHHHHHHHHHHH
Q 011514          167 -LSTTSAFQAATIVSMLA  183 (484)
Q Consensus       167 -l~~~~~f~~~~~~~~i~  183 (484)
                       .||+..|.+.+++.++.
T Consensus       357 ~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       357 EIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             hhchhhHHHHHHHHHHHh
Confidence             47899998887665554

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.32  E-value=6.1e-11  Score=116.03  Aligned_cols=139  Identities=14%  Similarity=0.149  Sum_probs=116.6

Q ss_pred             hhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHh
Q 011514          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIF  342 (484)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (484)
                      ......+|.+.++ +|.++.+.+...+...++..++. +..+++.||+|||+.+..+..+..++.....+.++.+.    
T Consensus         8 ~~~~p~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~----   81 (377)
T PRK11102          8 DMYLPALPVIAAD-FGVSAGSVQMTLSAYILGFAIGQ-LFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQ----   81 (377)
T ss_pred             HHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHH----
Confidence            3445667777766 59999999999999999999998 67799999999999999999998888888877666555    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                                                        +.....+.+++.+...+...+++.|..|+++|+++.++.+....++
T Consensus        82 ----------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  127 (377)
T PRK11102         82 ----------------------------------LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIA  127 (377)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence                                              2344447788888888888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCC
Q 011514          423 NIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       423 ~~~gp~i~g~l~~~~~~~~~  442 (484)
                      ..++|.+.+.+.+.. +.+.
T Consensus       128 ~~~~~~~~~~l~~~~-~~~~  146 (377)
T PRK11102        128 PLLAPIIGGWLLVWF-SWHA  146 (377)
T ss_pred             HHHHHHHHHHHHHHc-ChHH
Confidence            999999999998865 4433

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.32  E-value=4.1e-11  Score=117.64  Aligned_cols=151  Identities=11%  Similarity=0.035  Sum_probs=121.9

Q ss_pred             HHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhh
Q 011514          266 QASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNK  345 (484)
Q Consensus       266 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (484)
                      ....|. +++.+|.++.+.++..+...++..++. +..|++.||+|||+.+..+..+..++.....+.++.+.       
T Consensus        14 ~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~-------   84 (399)
T TIGR00893        14 SFAAPM-LQEDLGLSAAQYGYVFSAFSWGYVVGQ-FPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVS-------   84 (399)
T ss_pred             hHhHHH-HHHhhCCChhhHHHHHHHHHHHHHHHH-HhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHH-------
Confidence            333444 666679999999999999999999999 67799999999999999999888888888877776655       


Q ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHH
Q 011514          346 VFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIV  425 (484)
Q Consensus       346 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~  425 (484)
                                                     +.....+.|++.+...+....++.|..|+++|+++.++.+....+|..+
T Consensus        85 -------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~  133 (399)
T TIGR00893        85 -------------------------------LYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGII  133 (399)
T ss_pred             -------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHH
Confidence                                           2444457888888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          426 SPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       426 gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      +|.+.+.+.+.. +++.       .|.+.++..++..+.
T Consensus       134 ~~~~~~~l~~~~-~~~~-------~~~~~~~~~~~~~~~  164 (399)
T TIGR00893       134 GGPLVGWILIHF-SWQW-------AFIIEGVLGIIWGVL  164 (399)
T ss_pred             HHHHHHHHHHhC-CchH-------HHHHHHHHHHHHHHH
Confidence            999999988765 4443       345544444443333

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.32  E-value=3e-11  Score=113.14  Aligned_cols=177  Identities=14%  Similarity=0.110  Sum_probs=138.1

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +....+.+..+.+....+....|. +.+..++|..|.|.+.+...+...++. ++.|.++||.+.|+.+..++++.++..
T Consensus        31 f~~~fiGYa~fYl~RknF~~a~p~-l~e~~~lsk~~lG~i~s~f~i~YG~sK-f~~G~~sDr~npr~fm~~gLilsai~n  108 (448)
T COG2271          31 FLSIFIGYAAFYLTRKNFNLAMPA-LIEDGGLSKTQLGILGSAFSITYGVSK-FVMGVLSDRSNPRYFMAFGLILSAIVN  108 (448)
T ss_pred             HHHHHHHHHHHHHHHHhHhhccHH-HHHhcCCCHHHHHHHHHHHHHHHHHHH-HHhhhhcccCCCceeehHHHHHHHHHH
Confidence            333444444444444445544555 445558999999999999999999999 888999999999999999999999999


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      +++++.++.+.                                      ..+...+-|.+++...|.+...+++-+|+++
T Consensus       109 il~Gfs~s~~~--------------------------------------~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~e  150 (448)
T COG2271         109 ILFGFSPSLFL--------------------------------------FAVLWVLNGWFQGMGWPPCARTITHWFSRKE  150 (448)
T ss_pred             HHHhhhhHHHH--------------------------------------HHHHHHHHHHHhcCCCcHHHHHHHHHcCccc
Confidence            99999886665                                      2455558899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhcCCCCcccCchHHHHHHHHHH-HHHHHHHHhccCC
Q 011514          408 QGKAQGCISGISSFANIVSPLIF--SPLTALFLSKGAPFNFPGFSIMCIGLASM-VAFIQSLMMSHTP  472 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~--g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  472 (484)
                      ||+..++-|+..++|+.+.|++.  +.+.++. +.+.       .|++.+++.+ ++++..++.|+++
T Consensus       151 RG~~~siWn~shNiGGal~~~~~~la~~~~~~-~w~~-------~f~~pgiiaiival~~~~~~rd~P  210 (448)
T COG2271         151 RGTWWSIWNTSHNIGGALAPLVALLAFFAFHG-GWRA-------AFYFPGIIAIIVALILLFLLRDRP  210 (448)
T ss_pred             cCceEEEehhhhhcccchHHHHHHHHHHHhcc-chhH-------HHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99999999999999999999999  7777764 4444       3455555444 4444455555554

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.31  E-value=2.6e-11  Score=121.47  Aligned_cols=165  Identities=14%  Similarity=0.143  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc--CchhHhH-
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY--GRKAMLT-   85 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~--Grk~~l~-   85 (484)
                      .++......++..++.......+|.+.++.        +.+....|++.++..++..++.++.|.++||.  ++|+... 
T Consensus       242 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  313 (455)
T TIGR00892       242 GFLVYLSGNVIMFLGFFAPIIFLVPYAKDK--------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLF  313 (455)
T ss_pred             hHHHHHHHHHHHHHHccchHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHH
Confidence            344445555555666555566777777654        34455678999999999999999999999984  3343333 


Q ss_pred             -HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           86 -LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        86 -~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                       .+.+..+++.++....++   .+.+++.+++.|++. +...+...+++.|.+|++++++.+++.+...++|..+||.++
T Consensus       314 ~~~~~~~~l~~ll~~~~~~---~~~~~i~~~~~G~~~-g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~  389 (455)
T TIGR00892       314 SFALLFNGLTHLLCALAGD---YTGLVIYCIFFGLSF-GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLA  389 (455)
T ss_pred             HHHHHHHHHHHHHHHHhch---HHHHHHHHHHHHHHh-chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccce
Confidence             334444555566667777   777888999999755 666678899999999999999999999999999999999998


Q ss_pred             Hhh-----hhHHHHHHHHHHHHHHHH
Q 011514          165 RFL-----STTSAFQAATIVSMLAAA  185 (484)
Q Consensus       165 ~~l-----~~~~~f~~~~~~~~i~~~  185 (484)
                      +.+     +|+..|++.+++.++..+
T Consensus       390 G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       390 GRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             eeeehhcCCcchHHHHhhHHHHHHHH
Confidence            863     488888888776655544

>TIGR00897 2A0118 polyol permease family

Probab=99.31  E-value=1.7e-10  Score=113.82  Aligned_cols=153  Identities=18%  Similarity=0.146  Sum_probs=120.0

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.+....+..++..........+.+.+.++ +|.++.+.+...+...++..+++ ++.|++.||+|||+.+..+..+..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~i~~-~~~g~l~dr~g~k~~l~~~~~~~~   89 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKA-LGLSPQQSASAFTLYGIAAAISA-WISGVVAEIIGPLKTMMIGLLLWC   89 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhHHHhHHHHHHH-hCCCHHHhHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHHHHHHHH
Confidence            4666777777777777777777788888866 59999999999999999999999 667999999999999999888877


Q ss_pred             HHHHHHh---hc-cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          325 INMFICS---IS-WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       325 ~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      ++.+...   .. .+.+.                                      +.....+.|++.+...+...+.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~i~G~g~~~~~~~~~~~~~  131 (402)
T TIGR00897        90 VGHAAFIVFGLGHANYPL--------------------------------------ILLFYGIRGLGYPLFAYSFLVWVV  131 (402)
T ss_pred             HHHHHHHHHhccCccHHH--------------------------------------HHHHHHHHHcchHHHHhHHHHHHH
Confidence            7755432   22 22222                                      122333567776666777778888


Q ss_pred             cccCCCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Q 011514          401 KQVGPNEQGKAQGCISGISSFAN-IVSPLIFSPLTALF  437 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~-~~gp~i~g~l~~~~  437 (484)
                      +..|+++|++++|+.+...++|. .++|.+.+.+.+..
T Consensus       132 ~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~  169 (402)
T TIGR00897       132 YNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAF  169 (402)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999996 58899988888765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.31  E-value=1.9e-10  Score=113.68  Aligned_cols=157  Identities=11%  Similarity=0.118  Sum_probs=119.4

Q ss_pred             hhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHH
Q 011514          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIK  340 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (484)
                      ....+...+|.+. +.+|.++.+.+...+...++..++. ++.|+++||+|||+.+..+.....++.......++.+.  
T Consensus        28 ~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--  103 (406)
T PRK15402         28 ANDMIQPGMLAVV-EDFNAGAEWVPTSMTAYLAGGMFLQ-WLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQ--  103 (406)
T ss_pred             hhhhHhcchHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHH--
Confidence            3444555566655 4569999999999999999999988 66699999999999999998888888777777665555  


Q ss_pred             HhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHH
Q 011514          341 IFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       341 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                                                          +.....+.|.+.+...+...+.+.|.+|+++|++..+.......
T Consensus       104 ------------------------------------l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  147 (406)
T PRK15402        104 ------------------------------------FTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVAL  147 (406)
T ss_pred             ------------------------------------HHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence                                                13333466777777777888889999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHH
Q 011514          421 FANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS  465 (484)
Q Consensus       421 lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (484)
                      ++..++|.+.+.+.+.. +++.       .+.+.+++.++.....
T Consensus       148 ~~~~~g~~i~~~l~~~~-~w~~-------~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        148 LAPLLGPLVGAALIHVL-PWRG-------MFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHHHHHHcc-CccH-------HHHHHHHHHHHHHHHH
Confidence            99999999999988864 4444       3455444444444433

>TIGR00895 2A0115 benzoate transport

Probab=99.30  E-value=9.4e-11  Score=115.34  Aligned_cols=140  Identities=14%  Similarity=0.131  Sum_probs=115.2

Q ss_pred             hhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHH
Q 011514          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKI  341 (484)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (484)
                      ........|.+. +.+|.++.+.+++.+...++..++. ++.+++.||+|||+.+..+..+..++.+.....++.+.   
T Consensus        33 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---  107 (398)
T TIGR00895        33 LAAMGFAAPAIS-AEWGLDPVQLGFLFSAGLIGMAFGA-LFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQ---  107 (398)
T ss_pred             HHHHHhhHHHHh-hccCCCHHHHHHHHHHHHHHHHHHH-HHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHH---
Confidence            334444455554 4469999999999999999999988 77799999999999999999888888877777665554   


Q ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 011514          342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF  421 (484)
Q Consensus       342 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l  421 (484)
                                                         +.....+.+++.+...+...+++.|..|+++|+++.|+.+....+
T Consensus       108 -----------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  152 (398)
T TIGR00895       108 -----------------------------------LLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPI  152 (398)
T ss_pred             -----------------------------------HHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHH
Confidence                                               244455788888888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCC
Q 011514          422 ANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       422 g~~~gp~i~g~l~~~~~~~~~  442 (484)
                      |..++|.+.+.+.+.. +++.
T Consensus       153 g~~~~~~~~~~l~~~~-g~~~  172 (398)
T TIGR00895       153 GAAVGGFLAGWLIPVF-GWRS  172 (398)
T ss_pred             HHHHHHHHHHHHhhcc-ccee
Confidence            9999999999998865 5544

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.30  E-value=3.3e-10  Score=114.13  Aligned_cols=131  Identities=15%  Similarity=0.121  Sum_probs=99.5

Q ss_pred             hHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhh
Q 011514          265 MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFN  344 (484)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  344 (484)
                      .....|. +++.+|++..+.+...+...++..+++ ++.|+++||+|+|+.+..+.++.+++.++.++..+.+.      
T Consensus        55 ~~~~~~~-l~~~~gls~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~------  126 (476)
T PLN00028         55 AAPLLPI-IRDNLNLTKSDIGNAGIASVSGSIFSR-LAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATG------  126 (476)
T ss_pred             HHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHH------
Confidence            3334444 456679999999998888888888888 77799999999999999888888888877777766555      


Q ss_pred             hHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 011514          345 KVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI  424 (484)
Q Consensus       345 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~  424 (484)
                          +                            ....++.|++.+... ....++.+.+|+++||++.|+.+...++|..
T Consensus       127 ----l----------------------------~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~  173 (476)
T PLN00028        127 ----F----------------------------IAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG  173 (476)
T ss_pred             ----H----------------------------HHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH
Confidence                1                            222335566655443 3456788999999999999999998888888


Q ss_pred             HHHHHHHHHHHh
Q 011514          425 VSPLIFSPLTAL  436 (484)
Q Consensus       425 ~gp~i~g~l~~~  436 (484)
                      +++.+.+.+.+.
T Consensus       174 ~~~~~~~~i~~~  185 (476)
T PLN00028        174 VTQLLMPLVFPL  185 (476)
T ss_pred             HHHHHHHHHHHH
Confidence            888877766543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.30  E-value=2.1e-10  Score=112.44  Aligned_cols=166  Identities=14%  Similarity=0.096  Sum_probs=135.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|.++...+..++...+........|.+.+|.        +.+..+.|++.+...++..+..++.|++.||+|+|+.+.+
T Consensus       204 ~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~--------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~  275 (382)
T TIGR00902       204 NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAA--------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLI  275 (382)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHH
Confidence            34455666666777777777778888888764        4444567888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHH-HHHHhHHhHHHHhhH
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAAR  165 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~  165 (484)
                      +.+...+...+++++++   .+.+++.+++.|+.. +...+....++.+. |+++|++..++++ ...++|..+||.++|
T Consensus       276 ~~~~~~~~~~~~~~~~~---~~~~~~~q~l~g~~~-~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G  350 (382)
T TIGR00902       276 SAIACVGRWAIIGAIEA---FPLIFLLQILHCGTF-AVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAG  350 (382)
T ss_pred             HHHHHHHHHHHHHhHhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998   888899999999755 77888899999998 9999999999986 567899999999998


Q ss_pred             hh----hhHHHHHHHHHHHHHHHHH
Q 011514          166 FL----STTSAFQAATIVSMLAAAY  186 (484)
Q Consensus       166 ~l----~~~~~f~~~~~~~~i~~~~  186 (484)
                      .+    ++ ..|+..+.+.++..++
T Consensus       351 ~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       351 FIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHhccH-HHHHHHHHHHHHHHHH
Confidence            75    43 4566666666554433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.29  E-value=6.1e-10  Score=109.35  Aligned_cols=148  Identities=15%  Similarity=0.097  Sum_probs=109.0

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      |.++...+..+.............+.+-++.+|+|+.|.+++.++..+...+.+ +..|++.||+|.|+++.++..+..+
T Consensus        34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~r-ip~G~l~Dr~G~R~v~~~~~ll~~i  112 (462)
T PRK15034         34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLR-VPYSFMVPIFGGRRWTVFSTAILII  112 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHH
Confidence            455555544444444444444445555554689999999999999999999998 5559999999999999999999888


Q ss_pred             HHHHHhhc-----cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          326 NMFICSIS-----WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       326 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      ..+..++.     ++.+.          +                            .+...+.|++ +..++.....++
T Consensus       113 ~~~~~~~a~~~~~~s~~~----------l----------------------------li~r~l~Gig-g~~f~~~~~~vs  153 (462)
T PRK15034        113 PCVWLGIAVQNPNTPFGI----------F----------------------------IVIALLCGFA-GANFASSMGNIS  153 (462)
T ss_pred             HHHHHHHHHcccCCCHHH----------H----------------------------HHHHHHHHHH-HHhHHHHHHHHH
Confidence            88877765     33333          2                            3344466776 557788888999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                      +.+|+++||++.|+....+++|..+++.+...+
T Consensus       154 ~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~  186 (462)
T PRK15034        154 FFFPKAKQGSALGINGGLGNLGVSVMQLVAPLV  186 (462)
T ss_pred             HHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999999999999777777776665555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.27  E-value=2.5e-10  Score=112.43  Aligned_cols=151  Identities=15%  Similarity=0.121  Sum_probs=115.5

Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  330 (484)
                      .....++..+........+|.+.++ +|.++.+.+...+...+...++. +..|+++||+|||+.+..+.....++.+..
T Consensus        13 ~~~~~~~~~~~~~~~~p~~~~i~~~-~~~s~~~~~~~~~~~~~~~~~~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   90 (394)
T PRK11652         13 LVLLVAVGQMAQTIYVPAIADMARD-LNVREGAVQAVMAAYLLTYGLSQ-LFYGPLSDRVGRRPVILVGMSIFILGTLVA   90 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHH-hCCCHHHHHHHHHHHHHHHHHHH-HhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            3333444444444445556666554 59999999999999999999998 667999999999999999988888887777


Q ss_pred             hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhH
Q 011514          331 SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  410 (484)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  410 (484)
                      ...++.+.                                      +.....+.|++.+...+.......|..+++++++
T Consensus        91 ~~~~~~~~--------------------------------------l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  132 (394)
T PRK11652         91 LFAHSLTV--------------------------------------LIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRH  132 (394)
T ss_pred             HHHccHHH--------------------------------------HHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHH
Confidence            66665554                                      1333346677766667777788888899899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          411 AQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       411 ~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +.+..+....++..++|.+.+.+.+.. +++.
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~-g~~~  163 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLF-GWRA  163 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-ChHH
Confidence            999999999999999999999988764 4433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.27  E-value=3.1e-10  Score=112.22  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=119.8

Q ss_pred             hhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHH
Q 011514          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIK  340 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (484)
                      ........+|. ..+.+|.+..+.+...+.+.++..+++ +..|+++||+|||+++..+..+..++.+.....++.+.  
T Consensus        31 ~~~~~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~--  106 (413)
T PRK15403         31 TTDLIQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQ-WLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQ--  106 (413)
T ss_pred             HHHhhccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHH-HhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHH--
Confidence            33344444555 445569999999999999999999998 66799999999999999999988888888888777666  


Q ss_pred             HhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHH
Q 011514          341 IFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       341 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                              +                            ...-++.|++.+...+.......|.+|++++++..+..+....
T Consensus       107 --------l----------------------------~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (413)
T PRK15403        107 --------F----------------------------LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVL  150 (413)
T ss_pred             --------H----------------------------HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence                    2                            2333366776665566667788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH
Q 011514          421 FANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ  464 (484)
Q Consensus       421 lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  464 (484)
                      ++..+||.+++.+.++. +++.       .|.+.++..+++.+.
T Consensus       151 ~~~~~g~~lg~~l~~~~-gw~~-------~f~~~~~~~~i~~~~  186 (413)
T PRK15403        151 VAPIIGPLSGAALMHFV-HWKV-------LFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHhc-CHHH-------HHHHHHHHHHHHHHH
Confidence            99999999999988764 4444       455555555554444

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=99.27  E-value=5e-11  Score=112.42  Aligned_cols=399  Identities=15%  Similarity=0.160  Sum_probs=210.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc----cCchhH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ----YGRKAM   83 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr----~Grk~~   83 (484)
                      +.+..+....+-..++...-....++|+++.   |.     +..+.+.+--...+...+.+|+.|..+||    |||||.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l---Gv-----phk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRP  103 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL---GV-----PHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRP  103 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc---CC-----Ccccccccccccccccceecccccccccccccccccccc
Confidence            4445555555666677777788888888877   33     33345666666677888999999999995    898876


Q ss_pred             hH-HHHHHHHHHHHHHHhccchhh--------------HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhH-HHH
Q 011514           84 LT-LPLTLSIIPLAILAYRRSISF--------------FYAYYALRTLTAMVCEGSINCLALAYVADNISERQRAS-AFG  147 (484)
Q Consensus        84 l~-~~~~~~~i~~~~~~~~~~~~~--------------~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~-~~~  147 (484)
                      ++ .+.+..+++.++..++.+...              ....+++-.+.=+.. -.....+.+++.|...++++.+ +++
T Consensus       104 fI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~-n~~qgp~ra~L~Dl~~~d~~~~~Ans  182 (498)
T KOG0637|consen  104 FILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVAN-NTLQGPCRALLADLARGDAKKTRANS  182 (498)
T ss_pred             hHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhh-hhhhhhHHHHHHHhccChhhhhccch
Confidence            65 566777888888888766311              122333333333322 2444568999999998776666 999


Q ss_pred             HHHHHHHhHHhHHHHhhHhhhhH--HHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCcc
Q 011514          148 ILLGVLSASFVCGTLAARFLSTT--SAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVK  225 (484)
Q Consensus       148 ~~~~~~~~g~~ig~~l~~~l~~~--~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (484)
                      .......+|..+|..++++.+|+  .+|.....+.+.+..+-..+..|-+-....+.+......+..... +. ...+.+
T Consensus       183 ~f~~f~avGnvLGY~~g~y~~~~~~~~Ft~~~~~~~~C~~~~~~~~~~v~L~~i~~~~~l~~~~~~~~s~-~~-~~~~~~  260 (498)
T KOG0637|consen  183 VFSFFMAVGNVLGYALGSYLGLYKIFPFTLTTACDLYCANLKLCFFLEVTLLLIETSESLWYPQEKPLSP-KG-TTARSK  260 (498)
T ss_pred             hHHHHHHhcceeeeecccccCceEEeehHHHHHHHHHHHHHHHHHHHhhhhhheecccccccccccCCCC-Cc-cccccc
Confidence            99999999999999999888774  334443333333332222222111100000000000000000000 00 000000


Q ss_pred             CcccCCCCchHHHH-HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHh-hhcCcChhh---------------H-HHH
Q 011514          226 IPVCKKIPSIRDLI-CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLK-AQFHFNKNQ---------------F-ADL  287 (484)
Q Consensus       226 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~---------------~-~~~  287 (484)
                         ..+.....+.+ .....+|.++.+++...+.+++...+.-+...++- +.|+-|+..               . .+-
T Consensus       261 ---~~~~~~~~e~fG~~~~mpr~m~~L~i~~lltW~a~f~f~LF~TDfmG~~vy~GDp~a~~~S~a~~~Y~~GV~~G~~G  337 (498)
T KOG0637|consen  261 ---SSKLPFLLEIFGALKVMPRPMRMLLIVTLLTWIAWFPFLLFDTDFMGREVYGGDPKADENSEAKKLYNAGVRMGCLG  337 (498)
T ss_pred             ---ccCcchHHHHhchHhhCChhHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhCCCCCCCcchhHHHHHHhccccchHH
Confidence               00000011111 11234577888888888888887776666665543 334443221               1 133


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHH
Q 011514          288 MLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLL  367 (484)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  367 (484)
                      +.++.....+.+ +...++.||+|-|+.+..+.....++..+.....+.+.. ..+.+..                    
T Consensus       338 L~ins~~lgi~S-~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~-~~~~~~~--------------------  395 (498)
T KOG0637|consen  338 LMLNSIVLGIYS-LLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVV-LSHRSTA--------------------  395 (498)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHH-HHHHhhc--------------------
Confidence            456666666777 666899999996555444444344443333333322210 0000000                    


Q ss_pred             HHHhhhccchhhH----HHHHHHhhhhhhhHHHHHHhcccCCC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 011514          368 KILKSIFMQVPYA----TTAFSVLVVFATPSFRSIVSKQVGPN--EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKG  441 (484)
Q Consensus       368 ~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~p~~--~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~  441 (484)
                      .+++..+..+.+.    ....+.-....+..-++..+....+.  .+|...|+.+....+.+.+.....|.+.+..++.+
T Consensus       396 G~~~~~~~~~p~~l~~~y~~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~  475 (498)
T KOG0637|consen  396 GILSSPLLTVPYGALALYAILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGN  475 (498)
T ss_pred             ceeecchhcccHHHHHHHHHhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcc
Confidence            0000000000111    11122222222222233332222222  24667778888888888888888888888875555


Q ss_pred             C
Q 011514          442 A  442 (484)
Q Consensus       442 ~  442 (484)
                      .
T Consensus       476 ~  476 (498)
T KOG0637|consen  476 L  476 (498)
T ss_pred             h
Confidence            4

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.27  E-value=3.1e-10  Score=110.12  Aligned_cols=161  Identities=10%  Similarity=-0.104  Sum_probs=110.5

Q ss_pred             hhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHH
Q 011514          262 EGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKI  341 (484)
Q Consensus       262 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (484)
                      ...+...+|...+ .+|.|+.+.|+..+...++..+++ +..|++.||+|||+++..+......+.......++.+.   
T Consensus         7 ~~~~~~~lp~i~~-~~~~s~~~~g~~~s~~~~g~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~---   81 (368)
T TIGR00903         7 WVTFSPVLSLVAE-DIDVSKEELGLLAITYPAAFLALT-IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEW---   81 (368)
T ss_pred             HHHHHhhHHHHHH-HhCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHH---
Confidence            3345556666555 469999999999999999999999 66699999999888766554444443322222233333   


Q ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH
Q 011514          342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF  421 (484)
Q Consensus       342 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l  421 (484)
                             ++..|+                            +.|++.+. .+.......|..|+++|+++.++.+....+
T Consensus        82 -------l~~~R~----------------------------l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~l  125 (368)
T TIGR00903        82 -------LLACQL----------------------------LAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYL  125 (368)
T ss_pred             -------HHHHHH----------------------------HHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence                   333333                            66777765 445555668999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHH-HHHhccC
Q 011514          422 ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQ-SLMMSHT  471 (484)
Q Consensus       422 g~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  471 (484)
                      |..+++.+.+.+.+.. +.+.       .|.+.+++.++..+. ....+++
T Consensus       126 G~~l~~~~~~~l~~~~-gWr~-------~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903       126 GIIFALAAGLKIYTAG-GLQL-------LIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             HHHHHHHHHHHHHHcc-chHH-------HHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999998764 5444       445544444443333 3344443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.26  E-value=1.1e-09  Score=110.24  Aligned_cols=168  Identities=19%  Similarity=0.201  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+..+....++..+..+.....+|.+.++.+       +.+....|++.+..++|.++++...+++.+|+++++.+..+.
T Consensus       219 ~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l-------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~  291 (524)
T PF05977_consen  219 PLRSVLLRSFLFNLFASAVWALLPLFARDVL-------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLAS  291 (524)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHhhhHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHH
Confidence            3344444444444555556667888887765       333456799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-  167 (484)
                      +..+++.+..+++++   .+...+.-++.|.+. ........+.+.+..|++.|||.++++++....+..+|.++.|.+ 
T Consensus       292 ~~~a~~~~~lal~~~---~~~~~~~l~l~G~~~-~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  292 LLFALALLLLALSPS---FWLALIALFLAGAAW-IIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHHHHHHhcchH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999   788888888999655 555567888999999999999999999999888888888877764 


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHH
Q 011514          168 ---STTSAFQAATIVSMLAAAYM  187 (484)
Q Consensus       168 ---~~~~~f~~~~~~~~i~~~~~  187 (484)
                         |-+..+.+.++..++..++.
T Consensus       368 ~~~g~~~al~~a~~~lll~~~~~  390 (524)
T PF05977_consen  368 DHFGVRTALLIAGAALLLSALIA  390 (524)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHH
Confidence               56777777765544444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.26  E-value=3.8e-10  Score=114.75  Aligned_cols=151  Identities=14%  Similarity=0.154  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      .+....+..++..+.........|.+. +.+|.++.+.+...+...++..++. +..+++.||+|||+.+..+..+.+++
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~   98 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQ-GEFGLTTVQAASLISAAFISRWFGG-LLLGAMGDRYGRRLAMVISIVLFSVG   98 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            344445555555555555555566544 5579999999999999999999888 77799999999999999999888888


Q ss_pred             HHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          327 MFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .+...+.++.+.                                      +.....+.|++.+...+...+++.|.+|++
T Consensus        99 ~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~  140 (496)
T PRK03893         99 TLACGFAPGYWT--------------------------------------LFIARLVIGMGMAGEYGSSATYVIESWPKH  140 (496)
T ss_pred             HHHHHHHhHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            888877666555                                      244445778888888888899999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +|+++.++.+....+|..++|.+.+.+.+..
T Consensus       141 ~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~  171 (496)
T PRK03893        141 LRNKASGFLISGFSIGAVVAAQVYSLVVPVW  171 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999988754

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.26  E-value=5.4e-10  Score=109.85  Aligned_cols=178  Identities=12%  Similarity=0.047  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ..+.+.+..++...+.......+|.+.++.        +.+..+.|...+.+.++..++.+..|++.||+|||+.+..+.
T Consensus       206 ~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~--------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~  277 (393)
T PRK09705        206 RAWTLGVYFGLINGGYASLIAWLPAFYIEI--------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLAL  277 (393)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence            344444445555556656666778887664        344456789999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC-ccchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-ERQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      .+..++..+....++.  .....  -++.|++. +...|.......|..+ +++|++..+..+....++..+||.+.+.+
T Consensus       278 ~l~~~~~~~~~~~~~~--~~~~~--~~l~g~g~-g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        278 VLQLVGFCGFIWLPLQ--LPVLW--AMVCGLGL-GGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHHHHHHHHHHHccch--HHHHH--HHHHHHhc-cchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877777665543331  12222  23456544 4445666666677764 67899999999999999999999888875


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 011514          168 -----STTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (484)
Q Consensus       168 -----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~  199 (484)
                           +++..|.+.+...++.......+.||+++++.
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence                 25677777776777666666677777765543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.26  E-value=1.9e-10  Score=114.57  Aligned_cols=150  Identities=13%  Similarity=0.103  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +....+..+...+.........|. .++.+|.++.+.+...+...++..+++ +..|++.||+|||+.+..+....+++.
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~s~~~~~~~~~~~~~~~~l~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~   97 (426)
T PRK12307         20 LFSAWLGYVFDGFDFMLIFYIMYL-IKADLGLTDMEGAFLATAAFIGRPFGG-ALFGLLADKFGRKPLMMWSIVAYSVGT   97 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            344444444444444444444444 455679999999999999999999998 677999999999999999999999988


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                      +...+.++.+.          +                            ...-.+.|++.+...+....++.|..|+++
T Consensus        98 ~~~~~~~~~~~----------l----------------------------~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~  139 (426)
T PRK12307         98 GLSGLASGVIM----------L----------------------------TLSRFIVGMGMAGEYACASTYAVESWPKHL  139 (426)
T ss_pred             HHHHHHhHHHH----------H----------------------------HHHHHHHHHHHhhHHHHHHHHHHHhCCHhH
Confidence            88887776665          2                            334447888888888999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      |+++.|+......+|..++|.+.+.+.+..
T Consensus       140 r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~  169 (426)
T PRK12307        140 KSKASAFLVSGFGIGNIIAAYFMPSFAEAY  169 (426)
T ss_pred             hhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence            999999999999999999999888877654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.25  E-value=3.5e-10  Score=112.98  Aligned_cols=166  Identities=12%  Similarity=0.059  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      .++...+...........+....| ++++. |.++.+.++..+...++..++. +..|++.||+|||+.+..+..+.+++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~-g~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~~~~~~~~~~~~~~~  104 (438)
T TIGR00712        28 VFLGIFFGYAAYYLVRKNFALAMP-YLVEQ-GFSKGELGFALSAISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILSAAV  104 (438)
T ss_pred             HHHHHHHHHHHHHHHhccHHhhhH-HHHHc-CCCHhHhHHHHHHHHHHHHHhh-hccchhhhccCCceehHHHHHHHHHH
Confidence            333333333333333333344445 45564 9999999999999999999998 77799999999999998888888887


Q ss_pred             HHHHhhccc----hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          327 MFICSISWS----AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      .+.....+.    .+.                                      +.....+.+++.+...+.....+.|.
T Consensus       105 ~~~~~~~~~~~~~~~~--------------------------------------l~~~~~l~g~~~g~~~~~~~~~i~~~  146 (438)
T TIGR00712       105 MLLMGFVPWATSSIAI--------------------------------------MFVLLFLNGWFQGMGWPPCGRTMVHW  146 (438)
T ss_pred             HHHHhccccccchHHH--------------------------------------HHHHHHHHHHHhhcchHHHHHHHHHh
Confidence            776655421    111                                      12233366777777778788888999


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHH
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMV  460 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (484)
                      +|+++||+++|+.+....++..++|.+.+...+...+++.       .|.+.+++.++
T Consensus       147 ~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~-------~f~~~~~~~~i  197 (438)
T TIGR00712       147 WSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHA-------ALYFPAICAII  197 (438)
T ss_pred             cCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHH-------HHHHHHHHHHH
Confidence            9999999999999999999999999888766553223333       44555554444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.22  E-value=7.8e-10  Score=106.83  Aligned_cols=161  Identities=11%  Similarity=0.116  Sum_probs=127.7

Q ss_pred             hhHHHHHHHHhhhcCcChhh-HHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHh
Q 011514          264 GMQASFLYFLKAQFHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIF  342 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (484)
                      ...++...++.+.+|++..+ .|.+++....+..+.. +.+|++.||+|.|+++..+.+...+...+.++..+...    
T Consensus        43 ~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~q-Ip~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~----  117 (511)
T TIGR00806        43 PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVL-VPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWH----  117 (511)
T ss_pred             chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            44555555777788999999 9999999999999999 77799999999999999999999999999988776555    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                            +                            .+.-++.|++.+... ....++.+.+|+++|+++.|..+....+|
T Consensus       118 ------L----------------------------~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG  162 (511)
T TIGR00806       118 ------M----------------------------QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLG  162 (511)
T ss_pred             ------H----------------------------HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence                  3                            334448999999888 89999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          423 NIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       423 ~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      .++++++.+.+. .+ +...   +.. ...+......+++++.+++++
T Consensus       163 ~~Ia~~L~qll~-s~-gWr~---y~~-Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       163 VFLSSVLGQLLV-TL-GWIS---YST-LNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             HHHHHHHHHHHH-hc-Cchh---HHH-HHHHHHHHHHHHHHHHHhCCC
Confidence            999999999944 32 3222   111 234444455556666666653

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.22  E-value=8e-11  Score=114.96  Aligned_cols=140  Identities=17%  Similarity=0.179  Sum_probs=113.6

Q ss_pred             HHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccch
Q 011514          257 FSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSA  336 (484)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  336 (484)
                      +.......+....|. +++.+|.+..+.+++.+...++..++. +..|+++||+|||+.+..+..+..++.++..+.++.
T Consensus         6 ~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~   83 (379)
T TIGR00881         6 AYYLVRKNFALAMPY-LVEEIGLSKTDLGLLLSSFSIAYGISK-FVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSL   83 (379)
T ss_pred             HHHHhHHhhhhhhHH-HHHHhCCCHhHHHHHHHHHHHHHHhhh-hhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhH
Confidence            333444455555564 556679999999999999999999998 677999999999999999999998888888877766


Q ss_pred             hhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHH
Q 011514          337 WVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCIS  416 (484)
Q Consensus       337 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~  416 (484)
                      +.                                      +.....+.|++.+...+...+++.|..|+++|+++.++.+
T Consensus        84 ~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~  125 (379)
T TIGR00881        84 WV--------------------------------------MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWN  125 (379)
T ss_pred             HH--------------------------------------HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehh
Confidence            55                                      2444447788888888999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHh
Q 011514          417 GISSFANIVSPL-IFSPLTAL  436 (484)
Q Consensus       417 ~~~~lg~~~gp~-i~g~l~~~  436 (484)
                      ....+|..++|. +.+.+.+.
T Consensus       126 ~~~~~g~~~~~~~~~~~~~~~  146 (379)
T TIGR00881       126 CSHNVGGGLLPPLVLFGIAEL  146 (379)
T ss_pred             ccchhHHHHHHHHHHHHHHhc
Confidence            999999999994 55555443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=99.22  E-value=4.2e-07  Score=89.57  Aligned_cols=288  Identities=12%  Similarity=0.135  Sum_probs=175.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHH-HhhhhhcccccCchhHhH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVM-MPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~-~~~~G~l~Dr~Grk~~l~   85 (484)
                      .+.+..+.+..|+..+++++.-|.=..+.       .+..+.+.....++-+...++..+. .++.+++++|++|++++-
T Consensus         6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lv-------v~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~   78 (472)
T TIGR00769         6 LKKFLPLFLMFFCILFNYTILRDTKDTLV-------VTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFY   78 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhee-------ecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHH
Confidence            44555666666666676666655432222       1111112234567777777776666 889999999999999998


Q ss_pred             HHHHHHHHHHHHHHhc----cch-h-----------------------hHHHHHHHHHHhhhhccchhhH-hhhHHHhhc
Q 011514           86 LPLTLSIIPLAILAYR----RSI-S-----------------------FFYAYYALRTLTAMVCEGSINC-LALAYVADN  136 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~----~~~-~-----------------------~~~~l~~~r~l~G~~~~g~~~~-~~~~~i~~~  136 (484)
                      .....+.....++++.    ++. +                       ..|..-+..+...+.+ ..... ...++.+|.
T Consensus        79 ~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~-~~vvS~lFW~fandi  157 (472)
T TIGR00769        79 TVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWG-SVVLSLLFWGFANQI  157 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Confidence            8777777777766654    110 0                       0122233333444333 22333 678999999


Q ss_pred             CCccchhHHHHHHHHHHHhHHhHHHHhhHhhh------------hH----HHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514          137 ISERQRASAFGILLGVLSASFVCGTLAARFLS------------TT----SAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (484)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~------------~~----~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~  200 (484)
                      ++.+|-.|..++...+.++|.++|+.+...+.            |.    ..+.+..+...+ .+.+..++.+....+++
T Consensus       158 ~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~-~~~~~~~l~~~~~~~~~  236 (472)
T TIGR00769       158 TTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLA-IILLYWWVNRNVLTDPR  236 (472)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCcc
Confidence            99999999999999999999999998776643            21    222333323333 33333334332211111


Q ss_pred             CCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcC
Q 011514          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN  280 (484)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  280 (484)
                      .  .            +.++    +++.++.+.+..+.++.+.++|.++.+.+...+++......+...-..+++.+ -|
T Consensus       237 ~--~------------~~~~----~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~-p~  297 (472)
T TIGR00769       237 S--Y------------NPAL----KEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQY-PS  297 (472)
T ss_pred             c--c------------chhh----ccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CC
Confidence            0  0            0000    11112234578888999999999998888888888777777766666666665 34


Q ss_pred             hhhH----HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH
Q 011514          281 KNQF----ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA  323 (484)
Q Consensus       281 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~  323 (484)
                      +.+.    |.+....++...+.+ ++.+++.+|+|-+....+.-++.
T Consensus       298 ~~~~~~f~g~~~~~~gi~tl~~~-l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       298 PNEYSAFMGDFSTWTGVVSVTMM-LLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHH
Confidence            4443    344455566666666 44489999998877665544443

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.22  E-value=2e-10  Score=115.90  Aligned_cols=163  Identities=13%  Similarity=0.066  Sum_probs=116.7

Q ss_pred             HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHh---c
Q 011514           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY---R  101 (484)
Q Consensus        25 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~---~  101 (484)
                      .......|.+.++.   |.+.     ...++......++..++.++.|+++||+|||+.+..+..+.+++.++..+   .
T Consensus       301 ~~~~~~~~~~~~~~---g~~~-----~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (481)
T TIGR00879       301 NAIMYYSPTIFENA---GVST-----DHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGAS  372 (481)
T ss_pred             eehHHHHHHHHHHc---CCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            33444556666554   3322     34578888888999999999999999999999999988888887777662   1


Q ss_pred             cchh-----hHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHH
Q 011514          102 RSIS-----FFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----LSTTSA  172 (484)
Q Consensus       102 ~~~~-----~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~  172 (484)
                      ....     ....+....+..+..+ ....+....++.|..|+++|+++.+..+...++|..++|.+.+.    .+|++.
T Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~  451 (481)
T TIGR00879       373 FVTGSSKSSGNVAIVFILLFIAFFA-MGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV  451 (481)
T ss_pred             ccCCcccchhHHHHHHHHHHHHHHH-ccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccce
Confidence            1110     1222233333333223 33345677788999999999999999999999999999988765    378899


Q ss_pred             HHHHHHHHHHHHHHHHHHcccCCC
Q 011514          173 FQAATIVSMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       173 f~~~~~~~~i~~~~~~~~lpe~~~  196 (484)
                      |++.++++++..+...++.||+++
T Consensus       452 f~~~~~~~~~~~i~~~~~~~~~~~  475 (481)
T TIGR00879       452 FIFFGGLNVLGLIFVYFFLPETKG  475 (481)
T ss_pred             ehhHHHHHHHHHHHHheecccCCC
Confidence            998888888877777776777553

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.21  E-value=4.7e-10  Score=110.56  Aligned_cols=178  Identities=8%  Similarity=-0.014  Sum_probs=123.2

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +|.++......++..........++|.|+++.+|.++.+.+...+...+...+++ +..|+++||+|||+.+..+....+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~-~~~G~l~Dr~grr~~~~~~~~~~~   79 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQ-PLFGLISDKLGLKKHLLWIISGLL   79 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4678888888888888888999999999999899999999999999999999999 666999999999999887666554


Q ss_pred             HHHHHHh---hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          325 INMFICS---ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       325 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +......   ..+....              +        .+           ........+.+++.+...+...++..+
T Consensus        80 ~~~~~~~~~~~~~~~~~--------------~--------~~-----------~~~~~~~~~~g~~~~~~~~~~~~~~~~  126 (396)
T TIGR00882        80 VLFAPFFIYVFGPLLQS--------------N--------IL-----------VGAIVGGLYLGFVFSAGAGAIEAYIEK  126 (396)
T ss_pred             HHHHHHHHHHhhhHHHH--------------H--------HH-----------HHHHHHHHHHHHHhccchhhHHHHHHH
Confidence            4333221   1110000              0        00           001222345566666667777777666


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ..+  +++..+|......++|..++|.++|.+.+.  +++.       .|.+.+++.++..+..+.
T Consensus       127 ~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~--~~~~-------~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       127 VSR--NSNFEYGKARMFGCVGWALCASIAGILFSI--DPQI-------VFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hhh--hcccccchhhhhcccHHHHHHHHHhhhhcc--CchH-------HHHHHHHHHHHHHHHHHH
Confidence            433  345677888888999999999999988664  4443       445555544444433333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.21  E-value=1.3e-09  Score=107.49  Aligned_cols=149  Identities=11%  Similarity=0.037  Sum_probs=119.3

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINM  327 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~  327 (484)
                      +.......+...+.........|.+ ++.+|.+..+.|++.+...++..+++ +..+++.||+|+|+.+..+..+.+++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~-~~~~~~s~~~~g~l~s~~~~g~~i~~-~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQF-QQAFTLTAFQAALVQSAFYGGYFIMA-IPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            3444455555555555555667665 66679999999999999999999999 667999999999999999999998888


Q ss_pred             HHHhhcc---chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          328 FICSISW---SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       328 ~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      +++....   +.+.                                      +....++.|.+.+...+..+.++.+..|
T Consensus        83 ~l~~~~~~~~~~~~--------------------------------------~l~~~~l~G~g~g~~~~~~~~~~~~~~~  124 (410)
T TIGR00885        83 FLFWPAAEIMNYTL--------------------------------------FLVGLFILTAGLGFLETAANPYILVMGP  124 (410)
T ss_pred             HHHHHHHhhccHHH--------------------------------------HHHHHHHHHhhHHHHHhhhhHHHHHHCC
Confidence            7764432   2333                                      1344457889999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          405 PNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       405 ~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      ++++++..++.+...++|..++|.+.+.+...
T Consensus       125 ~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~  156 (410)
T TIGR00885       125 ESTATRRLNLAQSFNPFGSIIGMVVAQQLILS  156 (410)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999988643

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.20  E-value=3.6e-10  Score=113.79  Aligned_cols=133  Identities=10%  Similarity=0.007  Sum_probs=106.5

Q ss_pred             hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhh-----ccchhh
Q 011514          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSI-----SWSAWV  338 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  338 (484)
                      .+....|. +.+.+|.+..+.|++.+...++..+++ +..|+++||+|+|+++..+.++.++..+.++.     .++.+.
T Consensus        47 ~~~~~~~~-i~~~~~~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (467)
T PRK09556         47 NFKAAQND-MISTYGLSTTELGMIGLGFSITYGVGK-TLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGL  124 (467)
T ss_pred             ChhhhhHH-HHHhcCCCHHHHHHHHHHHHHHHHHHH-hhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            34445665 445679999999999999999999998 66799999999999998888777766665554     233333


Q ss_pred             HHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHH
Q 011514          339 IKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  418 (484)
Q Consensus       339 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  418 (484)
                                +                            ...-.+.|++.+...|...+++.+.+|+++||++.|+.+..
T Consensus       125 ----------l----------------------------~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~  166 (467)
T PRK09556        125 ----------M----------------------------IALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNIS  166 (467)
T ss_pred             ----------H----------------------------HHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecc
Confidence                      2                            33334778888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 011514          419 SSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       419 ~~lg~~~gp~i~g~l~~~  436 (484)
                      ..+|..+++.+...+.+.
T Consensus       167 ~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        167 HNLGGAGAGGVALWGANY  184 (467)
T ss_pred             cchhhhHHHHHHHHHHHh
Confidence            999999999988777664

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.18  E-value=3e-09  Score=105.78  Aligned_cols=178  Identities=17%  Similarity=0.225  Sum_probs=139.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCch--hHh
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRK--AML   84 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk--~~l   84 (484)
                      .|+....+++.++..-+.+.+......|.++.+       +.+..+...+.-+..+...+++.++|++.||+|.|  +++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~l-------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l  352 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVL-------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTL  352 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence            466777788888888888888888888877554       45555566777778888899999999999999999  888


Q ss_pred             HHHHHHHHHHHHHHHh--------ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhH
Q 011514           85 TLPLTLSIIPLAILAY--------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~--------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (484)
                      +.+..+..+..+.-.+        .++   -+.+.+.-++.|++. |...+...++.+|..|+++.+..+|++....-..
T Consensus       353 ~~~l~~~~~i~~~g~~G~~~~~~g~~~---~~~f~~~a~~~G~~~-G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s  428 (477)
T PF11700_consen  353 LISLILWIIIPLYGLFGFWPSFFGLKS---PWEFWVLAVLIGLFM-GGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS  428 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccCccc---HHHHHHHHHHHHHHh-hhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            8888777555444443        344   577788888999866 7777899999999999999999999999999999


Q ss_pred             HhHHHHhhHhh-----hhHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 011514          157 FVCGTLAARFL-----STTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       157 ~~ig~~l~~~l-----~~~~~f~~~~~~~~i~~~~~~~~lpe~~~  196 (484)
                      ..+||++-+.+     +.|..+....++.++.+++. ..+++++.
T Consensus       429 s~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g  472 (477)
T PF11700_consen  429 SWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKG  472 (477)
T ss_pred             HHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhh
Confidence            99999988875     25888887776666665555 44665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.17  E-value=3.3e-10  Score=108.95  Aligned_cols=156  Identities=20%  Similarity=0.195  Sum_probs=125.8

Q ss_pred             hhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      +..++....+++...+..+......+++--++++. +-.+...|..-... .++-+...++..++.+|+|+.+++..++.
T Consensus       367 ~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~-~~~~~LfGv~~a~~-~~gEI~~~ffs~klI~kiGHv~v~~lgLa  444 (618)
T KOG3762|consen  367 VFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDL-GGIKTLFGVVSALC-HAGEILFYFFSFKLIEKIGHVNVMYLGLA  444 (618)
T ss_pred             HhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeehhhhh-ccchHHHHHHHHHHHHHhcccceeeehhh
Confidence            34456666666666777777777777777777776 55555557444444 44444444888999999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          322 AACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +.++-++.+....+.|.                                      ++..-++.|+..+..+...-++++.
T Consensus       445 ~~~~Rf~~~S~L~n~W~--------------------------------------vLPieilqgit~aliWaa~~sY~s~  486 (618)
T KOG3762|consen  445 CNVGRFLYYSYLQNPWM--------------------------------------VLPIEILQGITHALIWAAIISYASH  486 (618)
T ss_pred             HHHHHHHHHHHhcCchh--------------------------------------eeeHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998                                      4667778999999999999999999


Q ss_pred             ccCCCchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhh
Q 011514          402 QVGPNEQGKAQGCISGI-SSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~-~~lg~~~gp~i~g~l~~~~  437 (484)
                      ..||+.+.+++|+.... ..+|..+|.+++|.+.+.+
T Consensus       487 vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  487 VAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             hCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            99999999999988765 5689999999999999886

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.16  E-value=2.8e-09  Score=106.88  Aligned_cols=122  Identities=14%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc----chhhHHHh
Q 011514          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW----SAWVIKIF  342 (484)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  342 (484)
                      ...| ++.+. |.+..+.+...+...++..+++ +..|+++||+|+|+++..+..+.+++.+.+.+..    +.+.    
T Consensus        50 ~~~p-~l~~~-g~s~~~~g~~~~~~~i~~~~~~-~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~----  122 (452)
T PRK11273         50 LAMP-YLVEQ-GFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV----  122 (452)
T ss_pred             HhhH-HHHHc-CCCHHHHHHHHHHHHHHHHHHH-hhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHH----
Confidence            3445 45666 9999999999999999999999 6779999999999999999988888887776643    2222    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                                                        +.....+.|++.+...+.....+.+.+|+++|+++.|+.+....+|
T Consensus       123 ----------------------------------~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  168 (452)
T PRK11273        123 ----------------------------------MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG  168 (452)
T ss_pred             ----------------------------------HHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhh
Confidence                                              1333346677777777777788889999999999999999999988


Q ss_pred             HHH-HHHH
Q 011514          423 NIV-SPLI  429 (484)
Q Consensus       423 ~~~-gp~i  429 (484)
                      ..+ +|.+
T Consensus       169 ~~~~~~l~  176 (452)
T PRK11273        169 GGLPPLLF  176 (452)
T ss_pred             hhHHHHHH
Confidence            754 4443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.15  E-value=8.4e-10  Score=111.68  Aligned_cols=142  Identities=13%  Similarity=0.076  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc--chhhHHHHHHHHHHhhhhccchhhHhhhH
Q 011514           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALA  131 (484)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~  131 (484)
                      ++......+...++.++.|+++||+|||+.++.+.++.+++.++++...  +.... ....+.++.+.+......|....
T Consensus       309 ~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  387 (479)
T PRK10077        309 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI-VALLSMLFYVAAFAMSWGPVCWV  387 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhccccchhHH
Confidence            4555667778889999999999999999999999999888887765432  21111 22223333332222233467889


Q ss_pred             HHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH----------hhhhHHHHHHHHHHHHHHHHHHHHHcccCCC
Q 011514          132 YVADNISERQRASAFGILLGVLSASFVCGTLAAR----------FLSTTSAFQAATIVSMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       132 ~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~----------~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~  196 (484)
                      +++|.+|+++|+++.++......+|.++++.+..          ..+|+..|++.+++.++..++.+++.||+++
T Consensus       388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~  462 (479)
T PRK10077        388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG  462 (479)
T ss_pred             HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence            9999999999999999999999998888754433          3467788888887777777777777787654

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.14  E-value=6.7e-09  Score=103.54  Aligned_cols=148  Identities=12%  Similarity=-0.009  Sum_probs=99.8

Q ss_pred             HHHHhchhhhhHHHHHHHHhhhcC---cChhhH---HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514          255 AFFSGLSEGGMQASFLYFLKAQFH---FNKNQF---ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (484)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  328 (484)
                      .++...-... ..+...++.+.++   .+..+.   +..++...++..+++ ++.|+++||+|||+.+..+....+++.+
T Consensus        31 ~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-~~~G~l~Dr~Grr~~l~~~~~~~~~~~~  108 (432)
T PRK10406         31 NLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGG-WLFGRIADKHGRKKSMLISVCMMCFGSL  108 (432)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence            3333333333 3344445555543   444432   333444444455777 7779999999999999999999999998


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      ..++.++...+  ...+...++..|                            ++.|++.+...|...+++.|..|+++|
T Consensus       109 ~~~~~~~~~~~--~~~~~~~l~~~R----------------------------~l~G~g~g~~~~~~~~~i~e~~p~~~r  158 (432)
T PRK10406        109 VIACLPGYETI--GTWAPALLLLAR----------------------------LFQGLSVGGEYGTSATYMSEVAVEGRK  158 (432)
T ss_pred             HHhhcCCchhH--HHHHHHHHHHHH----------------------------HHHHhhhhhhHhhHHHHHHHhCCCCcc
Confidence            88877654320  000111123333                            388999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                      |+..+..+.....|..+++.+...+.
T Consensus       159 g~~~~~~~~~~~~G~~~~~~~~~~~~  184 (432)
T PRK10406        159 GFYASFQYVTLIGGQLLALLVVVVLQ  184 (432)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999888888888888777655544

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.14  E-value=9.1e-10  Score=108.10  Aligned_cols=158  Identities=13%  Similarity=0.061  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT   89 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~   89 (484)
                      +.......++...........+|.+.++..       +.+..+.+...+...++..++.++.|+++||+|||+.+.....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~  293 (394)
T TIGR00883       221 FLLGLGLVIATTTTFYLITTYLPTYLTQTL-------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence            444455555555666666777888886543       2333456788888999999999999999999999998775554


Q ss_pred             HHHHHH-H-HHHhc--cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHH-HHHHHhHHhHHHHhh
Q 011514           90 LSIIPL-A-ILAYR--RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAA  164 (484)
Q Consensus        90 ~~~i~~-~-~~~~~--~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~l~  164 (484)
                      +..+.. . ...+.  ++   .+.+....++.|++. +...+...+++.|.+|+++|+++.+.. +....+|..++|.++
T Consensus       294 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~  369 (394)
T TIGR00883       294 LAALLAVPLLMALLDSGS---FTLFFFLVLGLALIG-GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIA  369 (394)
T ss_pred             HHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHH-HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHH
Confidence            443332 2 22222  33   556666777778644 566678899999999999999999974 566678888999888


Q ss_pred             Hhh----h-hHHHHHHHHH
Q 011514          165 RFL----S-TTSAFQAATI  178 (484)
Q Consensus       165 ~~l----~-~~~~f~~~~~  178 (484)
                      +.+    + |+..++....
T Consensus       370 g~l~~~~g~~~~~~~~~~~  388 (394)
T TIGR00883       370 AALVAMTGDWYAIGYYLAA  388 (394)
T ss_pred             HHHHHHcCcchhHHHHHHH
Confidence            764    4 6666555543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09952 shikimate transporter; Provisional

Probab=99.14  E-value=5.7e-09  Score=104.16  Aligned_cols=167  Identities=16%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHH
Q 011514           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (484)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~   96 (484)
                      .+...++........|.+.++..  +.++     .....+.....+...++.+..|+++||+|||+.+..+.++..++.+
T Consensus       259 ~~~~~~~~~~~~~~~~~y~~~~~--g~s~-----~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~  331 (438)
T PRK09952        259 RLCELLTMYIVTAFALNYSTQNL--GLPR-----ELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAF  331 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc--CCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            33444455555666777765543  2222     2223444455666778888999999999999998888776655544


Q ss_pred             HHHh---ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHH-HHhHHhHHHHhhHhh-----
Q 011514           97 ILAY---RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAARFL-----  167 (484)
Q Consensus        97 ~~~~---~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~l~~~l-----  167 (484)
                      ....   ..+  ..+.+++..++.+++. +...+...++++|.+|.+.|+.+.+..... ..+|..++|.+.+.+     
T Consensus       332 ~~~~~~~~~~--~~~~~~~~~~l~~~~~-~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~  408 (438)
T PRK09952        332 PFFMALEAQS--IFWIVFFSIMLANIAH-DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG  408 (438)
T ss_pred             HHHHHHHcCC--hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3322   222  1334444555656543 455567889999999999999888885444 457888888887764     


Q ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHcccC
Q 011514          168 -STTSAFQAATIVSMLAAAYMRVFLKDD  194 (484)
Q Consensus       168 -~~~~~f~~~~~~~~i~~~~~~~~lpe~  194 (484)
                       +|+.++...++..++..+..+ .+||+
T Consensus       409 ~~~~~~~~~~~~~~~i~~v~~~-~~~~~  435 (438)
T PRK09952        409 GSWHSVAIYLLAGCLISAMTAL-LMKDN  435 (438)
T ss_pred             CCchHHHHHHHHHHHHHHHHHH-Hcccc
Confidence             367777777766665555544 46663

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.14  E-value=3.7e-09  Score=104.36  Aligned_cols=172  Identities=13%  Similarity=0.104  Sum_probs=121.7

Q ss_pred             HHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchH-HHHHhHHHHHH
Q 011514          252 AVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAK-LLSLGLFAACI  325 (484)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~-~~~~~~~~~~~  325 (484)
                      ...++.+..........+|.|+++. |++.++.|.+......  .+.. ++.++++||+     |||| .+..+....++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~-g~~~~~ig~~~~~~~~--~~~~-~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVE-GLDIQTIGFFSLVGQA--YIFK-FLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHH--HHHH-HHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            4456667777777888999999997 9999999988665544  4666 5559999999     6765 67777777777


Q ss_pred             HHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          326 NMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +...+.+......                       +|.            +.....+.+...+...+...+++.|..|+
T Consensus        81 ~~~~l~~~~~~~~-----------------------~~~------------l~~~~~~~~~~~~~~~~~~~al~~~~~~~  125 (402)
T PRK11902         81 SIAAMAFCPPHAA-----------------------LWP------------LAGLAVLVAFLSASQDIVFDAYSTDVLHP  125 (402)
T ss_pred             HHHHHHhcCccch-----------------------HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            7777666532211                       000            12233345667777888999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhc
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMS  469 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (484)
                      ++|+++.++......+|..+++.+.+.+.+...+.+.       .|.+.++..++........+
T Consensus       126 ~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~-------~f~i~a~~~l~~~l~~~~~~  182 (402)
T PRK11902        126 EERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGN-------TYLLMAGLMLAGALTTLWAP  182 (402)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHH-------HHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999988874323333       34554444444443333343

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.13  E-value=5.7e-11  Score=112.42  Aligned_cols=178  Identities=11%  Similarity=0.126  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      .+..+.+...+...-.+.....++- .++.+|.++.+.|.+.....+..++.+ .+.|++.||++|++++.+|..+..++
T Consensus        34 ~l~il~~vnlmny~Dr~~iagv~~~-v~~~fni~~s~~Gll~~vf~v~~~i~s-Pl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   34 TLVILCLVNLMNYADRYTIAGVLKE-VQTYFNISDSELGLLQTVFIVVFMIAS-PLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHH-HHHhcCCCchhccchhHHHHHHHHHHH-HHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            3444444555544444444433333 556679999999999999999999999 66699999999999999999999999


Q ss_pred             HHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC
Q 011514          327 MFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN  406 (484)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  406 (484)
                      .+..++....|.          +                            .+.=.+.|+|.+...|..+++++|.+|++
T Consensus       112 v~~~~fs~~Fwq----------~----------------------------~l~R~~vGiGeAs~~~ia~s~IaD~f~~~  153 (493)
T KOG1330|consen  112 VFASGFSNHFWQ----------V----------------------------LLCRGFVGIGEASYSPIAPSLIADSFPDD  153 (493)
T ss_pred             HHHHHHHHHHHH----------H----------------------------HHHHHHhccchhhhcccchhHhhhcCcch
Confidence            998888877777          3                            33444899999999999999999999999


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      +|++++++.+.....|..+|-..++.+.++...+++.+       ...+++.++..++.....++
T Consensus       154 ~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af-------~~~avl~vi~~~L~~~f~~e  211 (493)
T KOG1330|consen  154 KRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAF-------RGSAVLGVIVGLLVFLFVRE  211 (493)
T ss_pred             hhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEE-------EeehHHHHHHHHHHHhhccC
Confidence            99999999999999999999998888888763344433       45555555554444444333

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.13  E-value=4.7e-09  Score=102.84  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=121.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |.++.+....++...........+|.+.+|.        +.+....|...+...++..+..++.|++.||+|+|+.+..+
T Consensus       205 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~  276 (382)
T PRK11128        205 PTVWRFLLCVSLLQGSHAAYYGFSAIYWQAA--------GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLS  276 (382)
T ss_pred             hhHHHHHHHHHHHHHHhHhHHHHHHHHHHHC--------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            3344455555555555555666677777654        33445668888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHH-HHHHhHHhHHHHhhHh
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL-GVLSASFVCGTLAARF  166 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~g~~ig~~l~~~  166 (484)
                      .+..+++.++.+..++   .+.+++..++.|++. +...+....++.+. +++++++..+..+ ...++|..+||.++|.
T Consensus       277 ~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~  351 (382)
T PRK11128        277 AICGVVRWGLMGSTTA---LPWLIVIQILHCGTF-TVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF  351 (382)
T ss_pred             HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998888888888   788888999999754 66677888888887 5667788888876 5567788899999887


Q ss_pred             h----hhHHHHHHHHHHHHHH
Q 011514          167 L----STTSAFQAATIVSMLA  183 (484)
Q Consensus       167 l----~~~~~f~~~~~~~~i~  183 (484)
                      +    ++ ..++..+.+.++.
T Consensus       352 l~~~~g~-~~~~~~~~~~~~~  371 (382)
T PRK11128        352 LYQHLGA-GVFWVMALVALPA  371 (382)
T ss_pred             HHHhccH-HHHHHHHHHHHHH
Confidence            5    44 4555555555443

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=4.9e-10  Score=103.94  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=125.3

Q ss_pred             CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhh
Q 011514          278 HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITR  357 (484)
Q Consensus       278 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~  357 (484)
                      +-+..++|+++....+...+.+ .+.|.+.||+|+|..+.+|+.++..+.+++++..+.+.                   
T Consensus       102 ~~e~~~iG~LFaskA~~qllvn-p~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~-------------------  161 (464)
T KOG3764|consen  102 DRENTQIGLLFASKALVQLLVN-PFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPM-------------------  161 (464)
T ss_pred             cccccchhHHHHHHHHHHHHhc-ccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHH-------------------
Confidence            4566778999999999999999 45599999999999999999999999999999988777                   


Q ss_pred             hhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          358 KQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE-QGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~-~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                                         +++.=.+.|++.+.......+++++.+|+++ ||+++|+.-.+.++|-.+||+++|.+||.
T Consensus       162 -------------------l~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~  222 (464)
T KOG3764|consen  162 -------------------LFVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF  222 (464)
T ss_pred             -------------------HHHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh
Confidence                               2444558999999999999999999999775 79999999999999999999999999999


Q ss_pred             hhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          437 FLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      . |++.||       ++.+++.++...+-++.-+.
T Consensus       223 ~-Gk~aPF-------lVL~~v~Lld~~L~l~vi~p  249 (464)
T KOG3764|consen  223 A-GKSAPF-------LVLAIVLLLDGALQLLVIEP  249 (464)
T ss_pred             c-CCcCcH-------HHHHHHHHHHHHHHHheeCc
Confidence            7 888865       77776666666555544333

>PRK10133 L-fucose transporter; Provisional

Probab=99.13  E-value=7.8e-09  Score=102.95  Aligned_cols=146  Identities=10%  Similarity=-0.009  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (484)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  328 (484)
                      ....+..+...+.........|.+ ++.+|.++.+.+...+...++..+++ +..+++.||+|+|+++..+..+.+++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~-~~~g~l~dr~G~r~~l~~g~~~~~~~~~  106 (438)
T PRK10133         29 ALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            344455566666666667777776 77789999999999999999999999 6779999999999999999999998887


Q ss_pred             HHh---hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          329 ICS---ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       329 ~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +..   ..++.+.                                      +....++.|++.+...+..+.++.+..|+
T Consensus       107 l~~~~~~a~~~~~--------------------------------------ll~~r~l~G~g~g~~~~~~~~~v~~~~~~  148 (438)
T PRK10133        107 LFWPAAEIMNYTL--------------------------------------FLVGLFIIAAGLGCLETAANPFVTVLGPE  148 (438)
T ss_pred             HHHHHHhcCCHHH--------------------------------------HHHHHHHHHHHHHHHHhhHHHHHHHhCCh
Confidence            652   3444444                                      23444588999999999999998887776


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                      +++++..+..+....+|..++|.+++.+.
T Consensus       149 ~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        149 SSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66667899999999999999999987765

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.09  E-value=9.5e-10  Score=90.77  Aligned_cols=132  Identities=20%  Similarity=0.241  Sum_probs=99.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHH
Q 011514          290 IAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKI  369 (484)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  369 (484)
                      ...++..++. ...+++.||+|||+.+..+.....++.+.....++.+.                               
T Consensus         6 ~~~~~~~~~~-~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   53 (141)
T TIGR00880         6 GYALGQLIYS-PLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITV-------------------------------   53 (141)
T ss_pred             eehhHHHHHH-hhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHH-------------------------------
Confidence            3455666777 66699999999999998888888887777766555444                               


Q ss_pred             HhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCch
Q 011514          370 LKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGF  449 (484)
Q Consensus       370 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~  449 (484)
                             ......+.+++.+...+...++..|..|+++|+++.+..+....++..++|.+.+.+.+.. +++.       
T Consensus        54 -------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~-------  118 (141)
T TIGR00880        54 -------LIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFL-GWRA-------  118 (141)
T ss_pred             -------HHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhccc-chHH-------
Confidence                   1344557788888888889999999999999999999999999999999999999998764 4333       


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 011514          450 SIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~  468 (484)
                      .+.+.+...++......+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       119 PFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            3455544444444444443

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=99.09  E-value=1e-07  Score=91.12  Aligned_cols=320  Identities=16%  Similarity=0.106  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHH
Q 011514           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYV  133 (484)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i  133 (484)
                      |.+.-+-.++.++..+.+.+..+|...+.=.....++..++.++.+++++   .+.-+++-.+.++.. |.--....++ 
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~---v~~~l~Gv~las~ss-g~GE~tfL~l-  136 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS---VWVRLLGVVLASLSS-GLGEVTFLSL-  136 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc---hhHHHHHHHHHhhhh-hhhHHHHHHH-
Confidence            55666677888888888889999988666666677788889999999999   777788888888654 4443344444 


Q ss_pred             hhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh---h--hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcc
Q 011514          134 ADNISERQRASAFGILLGVLSASFVCGTLAARF---L--STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPII  208 (484)
Q Consensus       134 ~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~---l--~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~  208 (484)
                      +..+++    ...+.++.+.+.+.++|+..-..   +  +-|..+.....+.++..+..++.+|+++...+.++.+.+ .
T Consensus       137 t~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~~~~~~~~~~-~  211 (402)
T PF02487_consen  137 THFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTNRPYQESESE-D  211 (402)
T ss_pred             HHhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcccCCC-C
Confidence            445543    34677777777777777643322   2  347777777777766665556666655433221111110 0


Q ss_pred             cccccccCCCCCCCCccCcccCCCCchHHHHHHhhcc-chhHHHHHHHHHHhchhhhhHHHHHHHH-hhhcCcChhhHHH
Q 011514          209 TEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSS-VTLSQAAVVAFFSGLSEGGMQASFLYFL-KAQFHFNKNQFAD  286 (484)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~  286 (484)
                      +.+++..+.   +.+..+.....+.+.++.++..++- +....+.+.++.......+   ..+... .....-...+..+
T Consensus       212 ~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqG---v~~tl~fp~~~~~~r~~Y~~  285 (402)
T PF02487_consen  212 EAEDDLLES---ETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQG---VAPTLLFPNSFFSPRDQYRW  285 (402)
T ss_pred             ccccccccc---ccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---hHHHhcCCccCCCHHHHHHH
Confidence            000000000   0000001111122334433322110 1222233333333333333   222221 1221222334455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHh------hccchhhHHHhhhhHHHHHHHHhhhhhhh
Q 011514          287 LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICS------ISWSAWVIKIFFNKVFKLLLLSFITRKQI  360 (484)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  360 (484)
                      +...+.++..+++.-.     .-+.-|++.+... +..+-+.++.      +.++.|.                      
T Consensus       286 Y~~~YQ~GVFISRSS~-----~~~rir~lwils~-LQ~~nl~~~~l~s~~~fipsi~i----------------------  337 (402)
T PF02487_consen  286 YQLLYQLGVFISRSSL-----PFFRIRRLWILSL-LQVINLVFLLLQSWYRFIPSIWI----------------------  337 (402)
T ss_pred             HHHHHHHHHhhhhcce-----eeeehhhHHHHHH-HHHHHHHHHHHHHHHHHhhHHHH----------------------
Confidence            5555555554444221     2222233333222 2222222211      1122222                      


Q ss_pred             hHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          361 SVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                                      ++..++..|+..|..+......+.+..|+++|..++|......+.|..++..++-.+
T Consensus       338 ----------------vf~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  338 ----------------VFVLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             ----------------HHHHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                            245566778888888888888899999999999999999999998887777665433

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.08  E-value=1.9e-09  Score=103.70  Aligned_cols=183  Identities=15%  Similarity=0.161  Sum_probs=151.5

Q ss_pred             hccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcC----cChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHH
Q 011514          243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH----FNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLS  317 (484)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~  317 (484)
                      .++|.++.++..-+.--+++++....+..|+...++    +|++++...++.++...-+.. +++||++|| +|+|+.+.
T Consensus        18 ~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~-i~GG~laDr~LG~~~tI~   96 (498)
T COG3104          18 GQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTP-IIGGWLADRVLGTRRTIV   96 (498)
T ss_pred             CCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHH-HHHHHHHHHhcchhHHHH
Confidence            356788888889999999999999999999988888    999998888888877777776 888999999 59999999


Q ss_pred             HhHHHHHHHHHHHhhcc--chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHH
Q 011514          318 LGLFAACINMFICSISW--SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSF  395 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  395 (484)
                      .+.++.+++.++++...  ....                                      +.+...++..|.|..=|..
T Consensus        97 lGail~~iGh~~L~~~~~~~~~g--------------------------------------l~i~L~~I~iG~Gl~K~Ni  138 (498)
T COG3104          97 LGAILMAIGHLVLAISSVSGPGG--------------------------------------LYIGLALIIVGTGLFKPNI  138 (498)
T ss_pred             HHHHHHHHHHHHHhccccccccH--------------------------------------HHHHHHHHHhccccccccH
Confidence            99999999999998874  2222                                      2555667779999999999


Q ss_pred             HHHHhcccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          396 RSIVSKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       396 ~~~~~~~~p~~~--~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+++.|.+|+++  |-..+++..+..++|+.++|.+.+++.+.. +++.       .|..+++-...+++..+..+++.
T Consensus       139 S~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~-g~~~-------gF~~aavGm~~gl~~f~~~~r~~  209 (498)
T COG3104         139 SSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINY-GWHV-------GFGLAAVGMIIGLVIFLLGRRHV  209 (498)
T ss_pred             HHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhh-CHHH-------HHHHHHHHHHHHHHHHHHccchh
Confidence            999999998653  666788889999999999999999999986 5554       56788888888887777666543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.06  E-value=2.7e-09  Score=107.51  Aligned_cols=128  Identities=13%  Similarity=0.067  Sum_probs=106.2

Q ss_pred             hcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc--chhhHHHhhhhHHHHHHHH
Q 011514          276 QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW--SAWVIKIFFNKVFKLLLLS  353 (484)
Q Consensus       276 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  353 (484)
                      .++++..+.|.+.+...++..+++ +..|++.||+|+|+.+..+.++..++.++..+..  +.+.               
T Consensus        70 ~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------  133 (465)
T TIGR00894        70 NFKWSGALQGLILSSHFYGQIIIQ-IPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIAL---------------  133 (465)
T ss_pred             CCCCCHHHhhHHHHHHHHHHHHHH-cchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchH---------------
Confidence            568999999999999999999999 7779999999999999988888777766654332  2222               


Q ss_pred             hhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          354 FITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       354 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                                             +...-++.|++.+...|....++.+..|+++|+++.|+.+....+|..++|.+.+.+
T Consensus       134 -----------------------l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l  190 (465)
T TIGR00894       134 -----------------------VVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWL  190 (465)
T ss_pred             -----------------------HHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                   134445889999999999999999999999999999999999999999999999998


Q ss_pred             HHhhhcCCC
Q 011514          434 TALFLSKGA  442 (484)
Q Consensus       434 ~~~~~~~~~  442 (484)
                      .+...+.+.
T Consensus       191 ~~~~~gw~~  199 (465)
T TIGR00894       191 CESWGGWPM  199 (465)
T ss_pred             HhccCCCCe
Confidence            876224444

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.05  E-value=1.2e-08  Score=103.70  Aligned_cols=124  Identities=16%  Similarity=0.110  Sum_probs=98.2

Q ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhh
Q 011514          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRK  358 (484)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  358 (484)
                      .+..+.+.+.+...++..++. ++.+++.||+|||+.+..+.++..++.++..+..+....    .....+         
T Consensus        53 ~~~~~~~~~~~~~~ig~~ig~-~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~~~---------  118 (502)
T TIGR00887        53 LPSSVSAAVNGSASIGTLAGQ-LFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPK----SVMATL---------  118 (502)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccc----hHHHHH---------
Confidence            455566888888899899998 777999999999999999988888887776665431100    000001         


Q ss_pred             hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          359 QISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                                         ...-++.|++.+...+....+++|.+|+++||++.++.+....+|..+++.+...+..
T Consensus       119 -------------------~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~  176 (502)
T TIGR00887       119 -------------------CFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLA  176 (502)
T ss_pred             -------------------HHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               3444488999999999999999999999999999999999999999999998877654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.05  E-value=5.1e-07  Score=87.86  Aligned_cols=322  Identities=13%  Similarity=0.073  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhc
Q 011514           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (484)
Q Consensus        57 ~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~  136 (484)
                      .++-+....++.++.+.+.|+.|.|..+.++......-.+.+-+.++    +.++....+.|++. +..+...-.|++|.
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~----y~~yfssallG~Ga-allw~GqG~ylt~~  130 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS----YYLYFSSALLGFGA-ALLWTGQGGYLTSN  130 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch----HHHHHHHHHhhhhH-Hheecccceehhhc
Confidence            66777777888888999999999999999999999988888877766    67789999999754 77677888999999


Q ss_pred             CCccchhHHHHHHHHHHHhHHhHHHHhhHhh------------hhH-HH----------HHHHHHHHHHHHHHHH--HHc
Q 011514          137 ISERQRASAFGILLGVLSASFVCGTLAARFL------------STT-SA----------FQAATIVSMLAAAYMR--VFL  191 (484)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l------------~~~-~~----------f~~~~~~~~i~~~~~~--~~l  191 (484)
                      .++|++.+..++.-+....+.++|...-..+            +.+ ..          ..+.+++..+..+...  .+.
T Consensus       131 st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~  210 (461)
T KOG3098|consen  131 STRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL  210 (461)
T ss_pred             CChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence            9999999999999999999999887554332            111 11          1111111111111111  111


Q ss_pred             ccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHH
Q 011514          192 KDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLY  271 (484)
Q Consensus       192 pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (484)
                      |.+......+                       ..+ ....+.++...+. .+++++..+....+..++....+....|.
T Consensus       211 p~~~~~~~~~-----------------------~~~-~~~~~~l~~~~~l-~~~~~ml~L~~~f~~tG~~~Sf~~~iypt  265 (461)
T KOG3098|consen  211 PSKDVVNCKS-----------------------SSE-TSFSELLKLTFKL-LKTPKMLLLFPFFFYTGLETSFWISIYPT  265 (461)
T ss_pred             Cccchhhhhh-----------------------hcc-ccHHHHHHHHHHH-hcCHhHHHHHHHHHHHHHHHHHHHhccch
Confidence            1111000000                       000 1111223343443 34566666665555555555555555555


Q ss_pred             HHhhh--cCcChhh-HHHHHHHHHHHHHHHHHHHHHHhhh---hhcchHHHHHhHHHHHHHHHHHhhccchhh-HHHhhh
Q 011514          272 FLKAQ--FHFNKNQ-FADLMLIAGLAGTISQLLFMPLLAP---ILGEAKLLSLGLFAACINMFICSISWSAWV-IKIFFN  344 (484)
Q Consensus       272 ~~~~~--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  344 (484)
                      .+.-.  .+.+... .+......+.+..++. ...+.+.|   ++|+++++.++..+..+..++.-....... .+    
T Consensus       266 ~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g-~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~----  340 (461)
T KOG3098|consen  266 CISFTRKLGSNTTYLIAIYSIGIGLGEVIGG-LDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLR----  340 (461)
T ss_pred             hhhhhhhccCcchhHHHHHHHHHhHHHHHHH-HHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCC----
Confidence            33322  2333333 3344444555555555 44466665   467788888877776666665543221100 00    


Q ss_pred             hHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHH
Q 011514          345 KVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANI  424 (484)
Q Consensus       345 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~  424 (484)
                                 +.+....      ...+......+...+.|++.+......+.++.+..| ++|.+++++...-+.++..
T Consensus       341 -----------~t~~~~~------~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~  402 (461)
T KOG3098|consen  341 -----------PTDSPPL------LFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASC  402 (461)
T ss_pred             -----------CCccccc------ccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHH
Confidence                       0000000      000011123556668899999999999999999995 8888999988888888777


Q ss_pred             HHHHHHH
Q 011514          425 VSPLIFS  431 (484)
Q Consensus       425 ~gp~i~g  431 (484)
                      ++-....
T Consensus       403 v~~f~~~  409 (461)
T KOG3098|consen  403 VAFFFSP  409 (461)
T ss_pred             HHhhhhh
Confidence            7655443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.05  E-value=1.4e-07  Score=95.43  Aligned_cols=166  Identities=13%  Similarity=0.076  Sum_probs=111.1

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHH
Q 011514           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQA-IIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPL   95 (484)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s-~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~   95 (484)
                      .++...+........+.+..+..       +.+..+.|+... ...++..++.++.|+++||+|||+.+..+.++.+++.
T Consensus       231 ~~l~~~~~~~~~~~~~~~l~~~~-------G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~  303 (491)
T PRK11010        231 IVLYKLGDAFAMSLTTTFLIRGV-------GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSN  303 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            33444444444444455544322       445566788774 5568999999999999999999988777666555544


Q ss_pred             HHH---Hhc-cchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----h
Q 011514           96 AIL---AYR-RSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----L  167 (484)
Q Consensus        96 ~~~---~~~-~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----l  167 (484)
                      +.+   +.. ++   .+.+...-++..+.. +...+...++..+..+++.+++..++.+...++|..+++.+.|.    .
T Consensus       304 l~~~~l~~~~~~---~~~l~~~~~l~~~~~-g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~  379 (491)
T PRK11010        304 AGYWLLSITDKN---LYSMGAAVFFENLCG-GMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAH  379 (491)
T ss_pred             HHHHHHHhcccc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            332   333 23   344444455544322 44445678889999999999999999999999998877666665    4


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcccC
Q 011514          168 STTSAFQAATIVSMLAAAYMRVFLKDD  194 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~~~~lpe~  194 (484)
                      ||+..|.+.+++.++..+...+ ++++
T Consensus       380 G~~~~f~~~~~~~l~~l~~~~~-~~~~  405 (491)
T PRK11010        380 GWPTFYLFSVAAAVPGLLLLLV-CRQT  405 (491)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            8999999888777776665554 4554

>TIGR00898 2A0119 cation transport protein

Probab=99.04  E-value=9.1e-09  Score=104.88  Aligned_cols=137  Identities=18%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcC
Q 011514           58 AIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNI  137 (484)
Q Consensus        58 s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~  137 (484)
                      ....+..+.+.++.++++||+|||+.+..+.++.+++.++..+.++.. .+...+.-++.+.+. +...+....+.+|.+
T Consensus       362 ~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~  439 (505)
T TIGR00898       362 FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL-YFLRTALAVLGKFGI-TSAFQMVYLYTAELY  439 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHH-HHHHHHHHHHhcccc
Confidence            345566777888899999999999999999999999888888776521 133334444444333 444567889999999


Q ss_pred             CccchhHHHHHHHHHHHhHHhHHHHhhHh--hhhHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 011514          138 SERQRASAFGILLGVLSASFVCGTLAARF--LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (484)
Q Consensus       138 ~~~~r~~~~~~~~~~~~~g~~ig~~l~~~--l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~  197 (484)
                      |++.|+.++|+.+....+|.+++|.+.+.  .++..++.+.+...++..+.. +++||++.+
T Consensus       440 p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~  500 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKGV  500 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCC
Confidence            99999999999999999999999988873  245667777776666665554 458887543

>TIGR00896 CynX cyanate transporter

Probab=99.04  E-value=7.3e-09  Score=100.45  Aligned_cols=133  Identities=14%  Similarity=0.094  Sum_probs=103.9

Q ss_pred             hhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHh
Q 011514          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIF  342 (484)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (484)
                      ......+|.+.+ .+|++..+.++..+...++..++. +..+++.||+|+|+.+..+..+..++.+.. ..++.+.    
T Consensus        17 ~~~~~~lp~l~~-~~~~s~~~~g~~~s~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~----   89 (355)
T TIGR00896        17 TSVGPLLPQIRS-ALGMSFSVAGLLTALPVLCFAVLA-PLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTAL----   89 (355)
T ss_pred             ccCcccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHH----
Confidence            334556676555 569999999999999999999999 777999999999999998887777766655 4444443    


Q ss_pred             hhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHH
Q 011514          343 FNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFA  422 (484)
Q Consensus       343 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg  422 (484)
                                                        +.....+.+++.+...+.......|..| ++|+++.|..+....+|
T Consensus        90 ----------------------------------l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g  134 (355)
T TIGR00896        90 ----------------------------------LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGG  134 (355)
T ss_pred             ----------------------------------HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHH
Confidence                                              1333446677777666666777778776 68999999999999999


Q ss_pred             HHHHHHHHHHHHHhh
Q 011514          423 NIVSPLIFSPLTALF  437 (484)
Q Consensus       423 ~~~gp~i~g~l~~~~  437 (484)
                      ..+++.+.+.+.+..
T Consensus       135 ~~i~~~~~~~l~~~~  149 (355)
T TIGR00896       135 AALAAAATVPLAQHS  149 (355)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999888764

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.02  E-value=1.9e-08  Score=98.93  Aligned_cols=167  Identities=10%  Similarity=0.016  Sum_probs=112.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHH-HHHHHHhhhhhcccccCchhHhHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+......++...+........+.+.+|.        +.+..+.|++...... ...++.++.|++.||+|+|+.+..+.
T Consensus       210 ~~~~~~~~~l~~~~~~~~~~~~~~~l~~~--------G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~  281 (390)
T TIGR02718       210 AWSLLALALLSAMTAVSGFGLSKLYLVDA--------GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGV  281 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHhc--------CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34445555566666666666777777664        4555677888887764 66677889999999999999998877


Q ss_pred             HHHHHHHHHHHhccc---hhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc-cchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           89 TLSIIPLAILAYRRS---ISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~---~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      .+.++.........+   ......+.....+.++.. +...+...+.+.+..++ +++++.++..+...++|..+||.++
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~  360 (390)
T TIGR02718       282 GLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLIT-GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA  360 (390)
T ss_pred             HHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            665333332221111   001233344444545333 45556677777777765 8899999999999999999999998


Q ss_pred             Hh----hhhHHHHHHHHHHHHHHHH
Q 011514          165 RF----LSTTSAFQAATIVSMLAAA  185 (484)
Q Consensus       165 ~~----l~~~~~f~~~~~~~~i~~~  185 (484)
                      |.    .|++..|...+.+.++..+
T Consensus       361 G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       361 GYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHH
Confidence            86    3678888887766655443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.02  E-value=1.6e-08  Score=98.10  Aligned_cols=165  Identities=11%  Similarity=0.111  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchHH-HHHhHHHHHHHHHHHhhccchh
Q 011514          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKL-LSLGLFAACINMFICSISWSAW  337 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~~  337 (484)
                      ......|.+.++. |+|..+.+..... .+...+ . ++.+.++||+     ||||. +..+....++....+.+..+..
T Consensus         6 ~~~~~~~~~~~~~-g~s~~~~g~~~~~-~~~~~~-~-~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~   81 (356)
T TIGR00901         6 LVGNTLPYWLRSK-NVSLKTIGFFSLV-GLPYSL-K-FLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST   81 (356)
T ss_pred             hHHhHHHHHHHHc-CCCHHHHHHHHHH-HHHHHH-H-HHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence            4455677877765 9999999988644 444443 5 5669999997     78776 4566666766666665553321


Q ss_pred             hHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHH
Q 011514          338 VIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISG  417 (484)
Q Consensus       338 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~  417 (484)
                      .                       ++.            +.....+.+.+.+...+...+++.|.+|+++|+++.|....
T Consensus        82 ~-----------------------l~~------------l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~  126 (356)
T TIGR00901        82 D-----------------------LPL------------LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIV  126 (356)
T ss_pred             h-----------------------HHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHH
Confidence            1                       000            12233345666677788889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCC-CcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          418 ISSFANIVSPLIFSPLTALFLSKGA-PFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       418 ~~~lg~~~gp~i~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      ...+|..+++.+.+.+.+..+.... .+.+ ...|.+.+++.++.....++.
T Consensus       127 ~~~~G~~~~~~l~~~l~~~~g~~~~~~~~w-r~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       127 GYRAGMLLSGSLALVLASPEFANTGLITLW-GYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             HHHHHHHHHHHHHHHHhhhccccccccccc-HHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999887621110 0001 114566666555555444433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.02  E-value=3.3e-09  Score=109.90  Aligned_cols=165  Identities=12%  Similarity=0.110  Sum_probs=114.4

Q ss_pred             hhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHh
Q 011514          263 GGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIF  342 (484)
Q Consensus       263 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (484)
                      .++....-..++++++++..+.|++.+...++..+.. +..+++.||.+|++.+.++.++.+++.+++++.+-... .|.
T Consensus        49 ~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~-i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~-~y~  126 (633)
T TIGR00805        49 NGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLI-IFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSG-RYS  126 (633)
T ss_pred             HHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHH-HHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcC-Ccc
Confidence            3333333345677789999999999999999999998 56699999999999999999999999988876531000 000


Q ss_pred             h--------h-hH-HHHHHHHhh------------hhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          343 F--------N-KV-FKLLLLSFI------------TRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       343 ~--------~-~~-~~~~~~~f~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      .        . .. ...++..--            .++...        -+..+..++..-++.|++.+...+...+++.
T Consensus       127 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~  198 (633)
T TIGR00805       127 YSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHK--------ESLMWLLFLVSQLLRGIGATPIFPLGISYID  198 (633)
T ss_pred             ccccccccccccccccccccCCCCCCccccccccccccccC--------CCceehhhHHHHHHHhccCCcchhcCchhhh
Confidence            0        0 00 000000000            000000        0000111244556889999999999999999


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      |.+|+++|++..|+.+....+|..+|+.++|.+.+..
T Consensus       199 d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~  235 (633)
T TIGR00805       199 DFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIY  235 (633)
T ss_pred             ccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999988764

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.01  E-value=2.7e-09  Score=98.50  Aligned_cols=116  Identities=16%  Similarity=0.123  Sum_probs=96.4

Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhh
Q 011514          280 NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQ  359 (484)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  359 (484)
                      +..-.|++-+.+++...+.+..+ |.++||+|||.++.+|.+..++..++.+...+...          +.+.||     
T Consensus        66 ~~~yaGflGSsF~ilQ~~sS~~~-G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~a----------fv~aR~-----  129 (451)
T KOG2615|consen   66 SVFYAGFLGSSFSILQFISSPLW-GCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAA----------FVLARF-----  129 (451)
T ss_pred             cchhhhhHhhHHHHHHHHhhhhh-hhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHH-----
Confidence            34456788888999999999555 99999999999999999999999888888877633          333344     


Q ss_pred             hhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          360 ISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                                             +.|...+. .....++++|.+++++|+.+++.++...++|.++||.++|++..
T Consensus       130 -----------------------l~Gi~kgn-l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  130 -----------------------LGGIFKGN-LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             -----------------------hhhhccCc-hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence                                   55665554 45678999999999999999999999999999999999999988

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.99  E-value=5e-08  Score=95.22  Aligned_cols=180  Identities=15%  Similarity=0.202  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |.+...++..++...+.+.+....+.|.+|.   |.    .+....|.+.++..++-++.-...+++..|+|.|+++.++
T Consensus       207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~---gg----~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a  279 (400)
T PF03825_consen  207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQEL---GG----YSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLA  279 (400)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            3445566677777888888888889998876   31    2333457777888888889889999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-cchhhH-HHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHH-HHhHHhHHHHhh
Q 011514           88 LTLSIIPLAILAYR-RSISFF-YAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV-LSASFVCGTLAA  164 (484)
Q Consensus        88 ~~~~~i~~~~~~~~-~~~~~~-~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~g~~ig~~l~  164 (484)
                      .+..++=..+++.. ++.+.. ...+....++|+.- +....+...++.+..|++.|+++.+++.+. .++|..+|..++
T Consensus       280 ~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf-~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~ig  358 (400)
T PF03825_consen  280 LVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTF-GLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIG  358 (400)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999999987 442111 22333456789754 777789999999999999999999998764 689999999999


Q ss_pred             Hhh----------hhHHHHHHHHHHHHHHHHHHHHHcccCC
Q 011514          165 RFL----------STTSAFQAATIVSMLAAAYMRVFLKDDV  195 (484)
Q Consensus       165 ~~l----------~~~~~f~~~~~~~~i~~~~~~~~lpe~~  195 (484)
                      |.+          .|...+.+.+.+.++..++.+++.||++
T Consensus       359 G~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  359 GWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            874          2345566666666666666666666543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.99  E-value=1.5e-08  Score=113.92  Aligned_cols=162  Identities=13%  Similarity=0.077  Sum_probs=122.5

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHH-HHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIY-LSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~-~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ++...+..++...........+|.+..+.+       +.+.. ..|++.+...++.++++++.|+++||+++|+.+.++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~  306 (1146)
T PRK08633        234 LWLAIIGLSYFWFISQLAQANFPAYAKEVL-------GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGA  306 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHH
Confidence            344444444444445556667777776653       23334 6689999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-  167 (484)
                      ++.+++.++..+..+   .+.+++..++.|++. +...+...+++.+..|+++|+++++..+....+|..+++.+++.+ 
T Consensus       307 ~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~  382 (1146)
T PRK08633        307 LGLALSLFLLPTAPS---LASVLVLFFLFGFSA-GLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS  382 (1146)
T ss_pred             HHHHHHHHHHHHhhh---HHHHHHHHHHHHHHH-HHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888777   677778888888655 666677899999999999999999999999999988888777654 


Q ss_pred             ----hhHHHHHHHHHHHHH
Q 011514          168 ----STTSAFQAATIVSML  182 (484)
Q Consensus       168 ----~~~~~f~~~~~~~~i  182 (484)
                          ++...+++.+.+.++
T Consensus       383 ~~~~~~~~~~~~~~~~~~~  401 (1146)
T PRK08633        383 GLGLSPAGLFYLIALVTLI  401 (1146)
T ss_pred             HhccCHHHHHHHHHHHHHH
Confidence                234455554444433

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.98  E-value=2e-08  Score=112.50  Aligned_cols=157  Identities=16%  Similarity=0.055  Sum_probs=106.7

Q ss_pred             hhccchhHHHHHHHHHHhchhhhhHHHHHHH----HhhhcCcC-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGGMQASFLYF----LKAQFHFN-KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +.++++++.++...++..+........++.+    +.+..+.+ ....++..+...+...+.+ ++.|+++||++||+++
T Consensus         7 l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~-~~~G~laDr~~rk~~~   85 (1140)
T PRK06814          7 LMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFS-ALAGQLADKYDKAKLA   85 (1140)
T ss_pred             hhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHh-hhHHhhhhhccHHHHH
Confidence            3455677777777666665544333222222    22221222 2345666777777778888 6779999999999976


Q ss_pred             HHhHHH--HHHHHHHHh-hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          317 SLGLFA--ACINMFICS-ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       317 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      .....+  ......... ...+.+.                                      ++...++.|++.+...|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~s~~~--------------------------------------l~~~~~l~gi~~a~~~p  127 (1140)
T PRK06814         86 KILKFAEIGIAALAIYGFHLNSVPL--------------------------------------LFAALFLMGIHSALFGP  127 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHH--------------------------------------HHHHHHHHHHHHHhhch
Confidence            432222  111111222 2234444                                      24455588999999999


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ...+++.+.+|++++++++|+.++..++|..+||.++|.+.+..
T Consensus       128 ~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~  171 (1140)
T PRK06814        128 IKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISG  171 (1140)
T ss_pred             HHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999864

>PRK15075 citrate-proton symporter; Provisional

Probab=98.97  E-value=2.6e-08  Score=99.35  Aligned_cols=156  Identities=13%  Similarity=0.048  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHH-HHHHH-----HHHHHHHHHHHHhhhhhcchHHHHHhHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLM-LIAGL-----AGTISQLLFMPLLAPILGEAKLLSLGLF  321 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~l~~~~g~~~~~~~~~~  321 (484)
                      .....+..++...-...+....|...+ .++.++.+.+... +....     ...+++ ++.|++.||+|||+.+..+..
T Consensus        17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~-~~~G~l~Dr~Grr~~l~~~~~   94 (434)
T PRK15075         17 ILRVTSGNFLEMFDFFLFGFYATAIAK-TFFPAGNEFASLMLTFAVFGAGFLMRPLGA-IVLGAYIDRVGRRKGLIVTLS   94 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCCCchHHHHHHHHHHHHHHHHhhhHH-HHHHHHhhhhchHHHHHHHHH
Confidence            344455556666555666666665544 4587776654332 22111     112455 666999999999999999999


Q ss_pred             HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          322 AACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +..++.++.++.++.+...  ......+                            ...-++.|++.+...+....++.|
T Consensus        95 ~~~~~~~l~~~~~~~~~~~--~~~~~~l----------------------------~~~R~l~G~~~g~~~~~~~~~~~e  144 (434)
T PRK15075         95 IMASGTLLIAFVPGYATIG--LAAPLLV----------------------------LLGRLLQGFSAGVELGGVSVYLAE  144 (434)
T ss_pred             HHHHHHHHHHhCCcHHHHH--HHHHHHH----------------------------HHHHHHhhccccccHHHHHHHHHh
Confidence            9999998888877654300  0000001                            223337788888888888899999


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      .+|+++|+++.++.+...+++..+++.+++.+..
T Consensus       145 ~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~  178 (434)
T PRK15075        145 IATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQ  178 (434)
T ss_pred             hCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888877654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.96  E-value=3.4e-08  Score=97.80  Aligned_cols=196  Identities=10%  Similarity=0.020  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhcchHHHHHh-HHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP----ILGEAKLLSLG-LFA  322 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~g~~~~~~~~-~~~  322 (484)
                      +.......+..++.+.....+.+.|+++ +|.++.+.+.......+...+.+ .+.|+++|    |+|||+..+.+ ...
T Consensus         6 li~~~~~~~Giq~~~~l~~~~l~~yl~~-lg~~~~~~~~i~~~~~l~~~i~~-Pi~G~lSDr~~sr~GRRrp~il~g~~~   83 (477)
T TIGR01301         6 LLRVASVAAGVQFGWALQLSLLTPYVQE-LGIPHAWASIIWLCGPLSGLLVQ-PLVGYLSDRCTSRFGRRRPFIAAGAAL   83 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-hHeeehhcCCCCCCCChHHHHHHHHHH
Confidence            4445555566667777778888888765 59999999999999999999999 66699999    59999987664 566


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhh-hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRK-QISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      ..+++.++++..+...          ...-+. .++ .....+.           .+....+..++.....+...+++.|
T Consensus        84 ~~~~l~ll~~~~~~~~----------~~~~~~-~~~~~~~~i~~-----------~~i~~~lld~~~n~~~~p~rALiaD  141 (477)
T TIGR01301        84 VAFAVILIGFAADIGH----------LFGDNL-DKKTKPRAIIV-----------FVVGFWILDVANNMLQGPCRAFLAD  141 (477)
T ss_pred             HHHHHHHHHhCchhhh----------hccccc-cccchhHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6667677766554321          000000 000 0000000           1233334556777777888999999


Q ss_pred             ccCCCch--hHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhcCC--CCcc----cCchHHHHHHHHHHHHHHHHHHh
Q 011514          402 QVGPNEQ--GKAQGCISGISSFANIVSPLIFSPL--TALFLSKG--APFN----FPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       402 ~~p~~~~--g~~~g~~~~~~~lg~~~gp~i~g~l--~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      .+|+++|  +.+.+..+...++|+.+|+.+++..  .+.+ +..  ....    -....|.+.+++.+++.......
T Consensus       142 l~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~  217 (477)
T TIGR01301       142 LTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIF-PFTKTEACGVSCANLKSCFLIDIILLAILTYIALSA  217 (477)
T ss_pred             ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhc-ccccccccccccchHHHHHHHHHHHHHHHHHHHeee
Confidence            9998865  6799999999999999999999875  2221 100  0000    11225667777666666655543

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.96  E-value=2.4e-08  Score=94.15  Aligned_cols=176  Identities=13%  Similarity=0.164  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      ++++....++.++..=+.+.+...-..+..       ++.+++..+..++.-..++..+++++++|++.||+|.|+++..
T Consensus       251 ~~~i~~FLiA~~~~~DGv~til~~~~~fg~-------~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~  323 (438)
T COG2270         251 RKNLVLFLIARFFYIDGVNTILAMGGVFGA-------ADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI  323 (438)
T ss_pred             ccchHHHHHHHHHHHhhHHHHHHHHHHHHH-------HHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence            456666666666666566655555555544       3447777788888888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      +.++..+.++...+...   -..+.+.-.+.|.+. |.....+.++.++..|+++-++.+|+++.....+..+||.+-+.
T Consensus       324 ~lvi~~~~~~~~~~~~~---~~~f~i~gll~g~s~-G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v  399 (438)
T COG2270         324 GLVILSIAALYLIFLEG---ELDFWILGLLVGTSL-GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV  399 (438)
T ss_pred             HHHHHHHHHHHHHHccc---cHHHHHHHHHHHHhc-chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence            99988888877776666   445566667778655 66678999999999999999999999999999999999988877


Q ss_pred             h-----hhHHHHHHHHHHHHHHHHHHHHHcccC
Q 011514          167 L-----STTSAFQAATIVSMLAAAYMRVFLKDD  194 (484)
Q Consensus       167 l-----~~~~~f~~~~~~~~i~~~~~~~~lpe~  194 (484)
                      +     .-|..+....++..+.++. ...+|++
T Consensus       400 ~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~  431 (438)
T COG2270         400 ITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVP  431 (438)
T ss_pred             HHHHhcchhhHHHHHHHHHHhhHhh-EEeecCC
Confidence            5     2366666555444443333 3345554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.94  E-value=2e-08  Score=94.59  Aligned_cols=132  Identities=17%  Similarity=0.114  Sum_probs=105.2

Q ss_pred             HHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHH
Q 011514          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVF  347 (484)
Q Consensus       268 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (484)
                      .+...+++.+|+|+.|.+++..+..+.+.+.+ +..+.+.||+|.|+....+.++..+-++.+.+..+.+.         
T Consensus        35 ~l~~~i~~~~~LS~~q~~ll~aiPil~GallR-l~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~---------  104 (417)
T COG2223          35 PLGVFIKSDFGLSEGQKGLLVAIPILVGALLR-LPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPS---------  104 (417)
T ss_pred             HHHhhhccccCCCHHHHHHHHHHHHHHhHHHH-HHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCc---------
Confidence            34445567889999999999999999999999 55599999999999999999999998888888766542         


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 011514          348 KLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       348 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                                    .|.            ++....+.|++ +..+......+++.+|||++|.+.|++. .+++|..+..
T Consensus       105 --------------~~~------------ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q  156 (417)
T COG2223         105 --------------TWQ------------LLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQ  156 (417)
T ss_pred             --------------hHH------------HHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHH
Confidence                          000            13444455554 3455667778899999999999999999 9999988888


Q ss_pred             HHHHHHHHhh
Q 011514          428 LIFSPLTALF  437 (484)
Q Consensus       428 ~i~g~l~~~~  437 (484)
                      .+...+....
T Consensus       157 ~~~P~v~~~~  166 (417)
T COG2223         157 LVAPLVAVAF  166 (417)
T ss_pred             HHHHHHHHHH
Confidence            8888777765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.94  E-value=1.8e-08  Score=100.66  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |.++.++...++...+........+.+.++..  +      +....+++.++..++.+++.+++|+++||+|||+.+..+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~  293 (437)
T TIGR00792       222 DQLLILCLAYLFYNLAFNIKNGVQVYYFTYVL--G------DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGG  293 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcchhheeEeeec--C------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            44455555556655555554444444443322  1      122456777788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC-------ccchhHHHHHHHHHHHhHHhHH
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS-------ERQRASAFGILLGVLSASFVCG  160 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~g~~ig  160 (484)
                      ..+.+++.+...+.++.  .+.+.+..++.|++. +...+...++++|..|       ++++|...++.+....+|..+|
T Consensus       294 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg  370 (437)
T TIGR00792       294 ILLMVLGYLIFFFAGSN--LPLILVLIILAGFGQ-NFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALA  370 (437)
T ss_pred             HHHHHHHHHHHHHcchh--HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHH
Confidence            98888888777765421  455666777777654 5666788899998875       4567999999999999999999


Q ss_pred             HHhhHh
Q 011514          161 TLAARF  166 (484)
Q Consensus       161 ~~l~~~  166 (484)
                      +.+.+.
T Consensus       371 ~~i~g~  376 (437)
T TIGR00792       371 GFLVGL  376 (437)
T ss_pred             HHHHHH
Confidence            988776

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.94  E-value=1.5e-07  Score=90.43  Aligned_cols=183  Identities=11%  Similarity=0.065  Sum_probs=140.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      |+++.+.+........+.....-.|.|..+++    ++.+.+....|++.++.-+.-++.-.+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f----~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAAIYDVFDQQFPIYFASFF----QSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            44444444433333344444455777777663    34466777899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHH-HHHHHhHHhHHHHhhHh
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF  166 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~  166 (484)
                      ..+.++=..+++++++   .+.+.+.+.+.|+-. +....+...|+++.+|+|-.++...+. +...++|..+.+.++|.
T Consensus       296 g~i~~iRi~~~~~~~~---~~~i~~~klLH~~e~-~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~  371 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN---PWVISLIKLLHALEF-PLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGY  371 (412)
T ss_dssp             HHHHHHHHHHHHT--S---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc---hHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            9999999999999999   899999999999754 666678999999999988877777764 67778888888877776


Q ss_pred             ----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 011514          167 ----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (484)
Q Consensus       167 ----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~  198 (484)
                          +|.+..|++.+.+.+...++..+.++++++..
T Consensus       372 lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~  407 (412)
T PF01306_consen  372 LYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI  407 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred             hHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence                47888999999888888888888888766543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.91  E-value=8.4e-08  Score=87.47  Aligned_cols=356  Identities=14%  Similarity=0.081  Sum_probs=209.4

Q ss_pred             HHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccch
Q 011514           63 GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQR  142 (484)
Q Consensus        63 ~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r  142 (484)
                      .+++.-.+.=.+.|-.-.|++++.-.+.......+..+.++   .+.+-+.-+..|... +. ..+.++|+-+..+++++
T Consensus        54 SYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s---V~~mQvlE~FyG~~t-Aa-EIAYysYIYs~Vd~~~Y  128 (433)
T KOG3810|consen   54 SYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS---VKAMQVLEFFYGPAT-AA-EIAYYSYIYSKVDPEMY  128 (433)
T ss_pred             HHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC---chheeeehhhcChHH-HH-HHhhhheeeeecCHHHH
Confidence            34445555667889998899999988888899999999999   888888899999755 33 35799999999999999


Q ss_pred             hHHHHHHHHHHHhHHhHHHHhhHhh------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccC
Q 011514          143 ASAFGILLGVLSASFVCGTLAARFL------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVN  216 (484)
Q Consensus       143 ~~~~~~~~~~~~~g~~ig~~l~~~l------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~  216 (484)
                      .++.+...+..-.|...|..++-.+      +++..=.+......++.++ ..++|..++..-.+.++++..      ..
T Consensus       129 qrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~-A~fLP~v~rSl~f~~~~~~~~------v~  201 (433)
T KOG3810|consen  129 KRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLL-ALFLPRVKRSLYFHRLEDKIS------VG  201 (433)
T ss_pred             HHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHH-HhhCCCCchhhhhhcccccce------ec
Confidence            9999999999888888887777553      2222222322222233333 345776653321111111110      00


Q ss_pred             CCCCCCCccCccc---CCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhc-CcChhhHHHHHHHHH
Q 011514          217 QNESNSPVKIPVC---KKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF-HFNKNQFADLMLIAG  292 (484)
Q Consensus       217 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~  292 (484)
                      +.++..+..+...   .....+.+-+....+||++....+-..+...++.....+....-++.- .-.....|..-....
T Consensus       202 ~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~t  281 (433)
T KOG3810|consen  202 DLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVST  281 (433)
T ss_pred             cchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHH
Confidence            0011101000000   000011222333557888887777777777777666655555444431 111111244555666


Q ss_pred             HHHHHHHHHHHHHhhhhhcchH--HHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHH
Q 011514          293 LAGTISQLLFMPLLAPILGEAK--LLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKIL  370 (484)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  370 (484)
                      +.+++.. +..|.+.-++.|..  ++..+....+...+.+....+.|.                                
T Consensus       282 lLGa~~~-~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~--------------------------------  328 (433)
T KOG3810|consen  282 LLGAIAA-LAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWV--------------------------------  328 (433)
T ss_pred             HHHHHHH-HHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceeh--------------------------------
Confidence            6677776 66677766555543  444555556666666666666666                                


Q ss_pred             hhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcCCCCcccC
Q 011514          371 KSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF---LSKGAPFNFP  447 (484)
Q Consensus       371 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~---~~~~~~~~~~  447 (484)
                            .-...+++........+.....+++....|.-|-.+|++.++.-+-+.+-..+   +.|..   .....-+...
T Consensus       329 ------~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~i---Vvd~~g~~L~ir~Q~~~Y  399 (433)
T KOG3810|consen  329 ------CYAGYVLFRVIYQLTITIATFQIARNLSSELFGLVFGINTFVALILQSILTLI---VVDDRGLGLDIRTQFVVY  399 (433)
T ss_pred             ------hhhhHHHHHhhHhhhhhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhheEE---EEcccccCCCcceeEEEE
Confidence                  12223355566666677777777888888899999999888766555443333   23321   1122223333


Q ss_pred             chHHHHHHHHHHHHHHHHHHhccCC
Q 011514          448 GFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      +.-|++.+++.++.....+...++.
T Consensus       400 ~~Yf~v~~~i~~~~~~~~~~~~~~~  424 (433)
T KOG3810|consen  400 SSYFIVLGVIFLIGFGIEYLMCRRN  424 (433)
T ss_pred             eehHHHHHHHHHHHHHHHHHHhhcC
Confidence            4456777777777765554444433

>PTZ00207 hypothetical protein; Provisional

Probab=98.90  E-value=1.6e-07  Score=95.17  Aligned_cols=125  Identities=9%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             HHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc------chhhHHHhh
Q 011514          270 LYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW------SAWVIKIFF  343 (484)
Q Consensus       270 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~  343 (484)
                      ...+++.+|+|..+.+.+.+.. ......+ +..|++.||+|+|+++.++.++..++.++.++..      +.+.     
T Consensus        50 s~~L~~~lgls~~~l~~i~svg-~~~g~~~-lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~-----  122 (591)
T PTZ00207         50 SGAMQARYNLTQRDLSTITTVG-IAVGYFL-LPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVR-----  122 (591)
T ss_pred             HHHHHHHhCcCHHHHHHHHHHH-HHHHHHH-HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHH-----
Confidence            3346777899999998887663 3334455 4569999999999999999999999998888752      2232     


Q ss_pred             hhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHH
Q 011514          344 NKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFAN  423 (484)
Q Consensus       344 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~  423 (484)
                                                       +.+...+.|.+.+...+.....+.+.+| ++||++.|+......+|.
T Consensus       123 ---------------------------------l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGs  168 (591)
T PTZ00207        123 ---------------------------------LSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGS  168 (591)
T ss_pred             ---------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHH
Confidence                                             1333446777777777777778888887 789999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 011514          424 IVSPLIFSPLTA  435 (484)
Q Consensus       424 ~~gp~i~g~l~~  435 (484)
                      .+.+.+...++.
T Consensus       169 aI~~~l~~~l~~  180 (591)
T PTZ00207        169 AILGSIQLAFFS  180 (591)
T ss_pred             HHHHHHHHHHHH
Confidence            865555554443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.88  E-value=2.1e-08  Score=99.16  Aligned_cols=154  Identities=15%  Similarity=0.177  Sum_probs=123.1

Q ss_pred             hhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHH
Q 011514          274 KAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLS  353 (484)
Q Consensus       274 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (484)
                      +..+.+++.+.+++++....+.++++ +-++++.||+|.|+++..+.++.++..++.++..+...        ..+++.|
T Consensus        65 ~~~~~ws~~~k~~i~ss~~~G~i~~~-iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~--------~~~~~~R  135 (466)
T KOG2532|consen   65 AGEYDWSSTEKGLIFSSFFWGYILGQ-IPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGF--------YLLLVLR  135 (466)
T ss_pred             CceecCCHHHHHHHHHHHHHHHHHHH-cCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcc--------hhhHHHH
Confidence            34678999999999999999999999 66699999999999999999999999988887654332        0134444


Q ss_pred             hhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          354 FITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       354 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                      +                            +.|++.+..+|....+..+-.|+++|++..++.....++|.+++-++.|.+
T Consensus       136 ~----------------------------lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~l  187 (466)
T KOG2532|consen  136 F----------------------------LQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLL  187 (466)
T ss_pred             H----------------------------HhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            4                            899999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcCCCCcccCchHHHHHHHHHHH-HHHHHHHhccC
Q 011514          434 TALFLSKGAPFNFPGFSIMCIGLASMV-AFIQSLMMSHT  471 (484)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  471 (484)
                      .+...|...       .|.+.+++.++ ..++.+...++
T Consensus       188 c~s~~GW~s-------ifY~~g~~g~i~~~~w~~~~~d~  219 (466)
T KOG2532|consen  188 CESSLGWPS-------IFYVFGIVGLIWFILWFLFYSDS  219 (466)
T ss_pred             hccCCCCch-------HHHHHHHHHHHHHHHHHHHhcCC
Confidence            987325544       44555554444 33333444433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.86  E-value=2.2e-07  Score=87.08  Aligned_cols=147  Identities=16%  Similarity=0.028  Sum_probs=117.6

Q ss_pred             HHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhc
Q 011514          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSIS  333 (484)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  333 (484)
                      +.|+.+.........+...+++.++.+..|++.+......+..+.+ +-.+++.||+|+|+-+..++.++++++.++.-+
T Consensus        20 ~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~-lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pA   98 (422)
T COG0738          20 SLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMS-LPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPA   98 (422)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHh-ccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhh
Confidence            3344444444455566667888899999999999988888888887 777999999999999999999999999888644


Q ss_pred             cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514          334 WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  413 (484)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  413 (484)
                      .+....                                   ...+...++.+.|.+......+.+++..-|++...+-+.
T Consensus        99 a~~~~y-----------------------------------~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rln  143 (422)
T COG0738          99 ASSKSY-----------------------------------GFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLN  143 (422)
T ss_pred             hhhhhH-----------------------------------HHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHH
Confidence            332220                                   001444557888888889999999999999988899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 011514          414 CISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       414 ~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +.+.++.+|..++|++++.+..+
T Consensus       144 l~q~fn~lGa~~gp~~g~~lils  166 (422)
T COG0738         144 LAQAFNGLGAILGPLLGSSLILS  166 (422)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHh
Confidence            99999999999999999999884

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.81  E-value=3.6e-07  Score=89.73  Aligned_cols=149  Identities=16%  Similarity=0.132  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch---h--hH-HHHHHHHHHhhhhccc
Q 011514           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI---S--FF-YAYYALRTLTAMVCEG  123 (484)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~---~--~~-~~l~~~r~l~G~~~~g  123 (484)
                      ....-+..........+..++...+.||+|||+.++.+..+..+..+++......   .  +. +..+++.++..++-+-
T Consensus       304 ~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~  383 (485)
T KOG0569|consen  304 PEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAI  383 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc
Confidence            3344566667778888888899999999999999999999998888877765322   1  11 1223444444433333


Q ss_pred             hhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHH----HHhhHhhhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCC
Q 011514          124 SINCLALAYVADNISERQRASAFGILLGVLSASFVCG----TLAARFLSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDD  199 (484)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig----~~l~~~l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~  199 (484)
                      ...|...-+.+|.+|++.|+.+.++......+...+-    |.+-..+|- +.|....+...+..++.++.+||++.+..
T Consensus       384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~  462 (485)
T KOG0569|consen  384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTP  462 (485)
T ss_pred             CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCH
Confidence            3447889999999999999999999888877765443    333444555 67777777888888999999999986543

>PRK09848 glucuronide transporter; Provisional

Probab=98.79  E-value=1e-07  Score=95.59  Aligned_cols=151  Identities=12%  Similarity=0.078  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|.+....+..++...+........|.+.++.+       +.+....++......++.+++.+++++++||+|+|+.+..
T Consensus       227 n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~  299 (448)
T PRK09848        227 NRPLFMLCIGALCVLISTFAVSASSLFYVRYVL-------NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLI  299 (448)
T ss_pred             CchHHHHHHHHHHHHHHHHHHhhhheeeEeeec-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence            345555555566666665555555666655432       2223333444444567788899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCcc-------chhHHHHHHHHHHHhHHhH
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISER-------QRASAFGILLGVLSASFVC  159 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~g~~i  159 (484)
                      +.++.+++.++..+.++.. .+.+++..++.|++. +...+...++.+|..|++       ++|...+..+....+|..+
T Consensus       300 g~~~~~i~~~~~~~~~~~~-~~~~~~~~~l~g~G~-~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~ai  377 (448)
T PRK09848        300 GALLGTCGYLLFFWVSVWS-LPVALVALAIASIGQ-GVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAI  377 (448)
T ss_pred             HHHHHHHHHHHHHHcCchh-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHH
Confidence            9998888888777654211 455666677788654 666678899999988754       3588899999999999999


Q ss_pred             HHHhhHh
Q 011514          160 GTLAARF  166 (484)
Q Consensus       160 g~~l~~~  166 (484)
                      |+.+.+.
T Consensus       378 g~~i~g~  384 (448)
T PRK09848        378 GGSIPAF  384 (448)
T ss_pred             HHHHHHH
Confidence            9877765

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=98.77  E-value=1.5e-07  Score=94.37  Aligned_cols=172  Identities=18%  Similarity=0.277  Sum_probs=139.5

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccC--chhHhH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYG--RKAMLT   85 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~G--rk~~l~   85 (484)
                      +.+..+.+...+..++.....-.+|.+.++.   +.++     .....+.++.++...++.+..|+++|+..  ++.+..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~---g~~~-----~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~  369 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSL---GLSS-----NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFL  369 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCh-----hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHH
Confidence            4566677777888888888888888888765   4433     45578899999999999999999999988  455677


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      ++.+..+++....++.++   ++.+...-.+.|+.. |.........+.|..+.++-+.+.|+.....+++.++||.+++
T Consensus       370 ~~ll~~gl~~~~~p~~~~---~~~l~~~~~~fG~~~-g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag  445 (509)
T KOG2504|consen  370 LTLLIAGLARLFLPFATT---YVGLIVFSILFGFCV-GSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAG  445 (509)
T ss_pred             HHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccce
Confidence            888888999999999999   888899999999654 7776666678999999999999999999999999999999998


Q ss_pred             hh-----hhHHHHHHHHHHHHHHHHHHHHHcc
Q 011514          166 FL-----STTSAFQAATIVSMLAAAYMRVFLK  192 (484)
Q Consensus       166 ~l-----~~~~~f~~~~~~~~i~~~~~~~~lp  192 (484)
                      .+     .|...|+..+...++..... +..|
T Consensus       446 ~~~d~tg~Y~~~f~~~g~~~~~s~~~~-~~~~  476 (509)
T KOG2504|consen  446 LLYDITGNYDHAFYFCGLCFLLSAVLL-LILR  476 (509)
T ss_pred             eeeeccCCeeeehhhcChHHHHHHHHH-HHhH
Confidence            74     37788988886666655443 3345

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.76  E-value=3.4e-07  Score=92.27  Aligned_cols=127  Identities=16%  Similarity=0.143  Sum_probs=93.2

Q ss_pred             HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhH
Q 011514          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKV  346 (484)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (484)
                      +.++...+ ..|-++. ..++.....+...+.. .+.|+++|.+|||+.++.+.++..++.++.+-.++...        
T Consensus        65 ~~l~~I~~-diG~~~~-~~w~~~~~~l~~av~~-~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~--------  133 (599)
T PF06609_consen   65 SILPYINA-DIGGSDN-WSWFSTAWTLASAVSF-PFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNT--------  133 (599)
T ss_pred             HHHHHHHH-hcCCCcc-chHHHHHHHHHHHHHH-HhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHH--------
Confidence            34444444 4476544 4788888888888888 55699999999999999999999999999998888766        


Q ss_pred             HHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHH
Q 011514          347 FKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVS  426 (484)
Q Consensus       347 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~g  426 (484)
                                                    ++....+.|++.+... .....++|..|.+.|+...++.....-.....+
T Consensus       134 ------------------------------~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~  182 (599)
T PF06609_consen  134 ------------------------------FIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWIS  182 (599)
T ss_pred             ------------------------------HHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhccc
Confidence                                          3556667777755544 455668999999999887776665554445566


Q ss_pred             HHHHHHHHH
Q 011514          427 PLIFSPLTA  435 (484)
Q Consensus       427 p~i~g~l~~  435 (484)
                      |.+...+..
T Consensus       183 ~~ia~~~~~  191 (599)
T PF06609_consen  183 PLIAQLFAA  191 (599)
T ss_pred             HHHHHHhcc
Confidence            666655543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.75  E-value=3.1e-07  Score=91.47  Aligned_cols=148  Identities=19%  Similarity=0.220  Sum_probs=122.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|.+..++...++..++........+.+.++.+  +.+      ...+.+..+..++..++.+++++++||+|+|+.+..
T Consensus       224 nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl--~~~------~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~  295 (428)
T PF13347_consen  224 NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVL--GNE------GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYII  295 (428)
T ss_pred             cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHh--cCc------hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhh
Confidence            566777888888888888888888888888875  322      234677788999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcc--chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc-------cchhHHHHHHHHHHHhHH
Q 011514           87 PLTLSIIPLAILAYRR--SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSASF  157 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~--~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~  157 (484)
                      +..+.+++.++..+.+  +   .+.+++.-++.|++. +...+...++++|..+.       ++.|..++..+....+|.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~---~~~~~i~~~l~gi~~-~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~  371 (428)
T PF13347_consen  296 GLLLAALGFLLLFFLGPGS---PWLVLILFILAGIGY-GAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQ  371 (428)
T ss_pred             hHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhHhhh-cccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHH
Confidence            9999999999988886  6   788889999999766 66667899999999873       334778888888888888


Q ss_pred             hHHHHhhHh
Q 011514          158 VCGTLAARF  166 (484)
Q Consensus       158 ~ig~~l~~~  166 (484)
                      .+++.+.+.
T Consensus       372 ~la~~i~g~  380 (428)
T PF13347_consen  372 GLAGAIVGL  380 (428)
T ss_pred             HHHHHHHHH
Confidence            888876654

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.70  E-value=1.3e-06  Score=82.25  Aligned_cols=161  Identities=24%  Similarity=0.309  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (484)
                      .....+....+.....+..+.+..+.   +.+..  . ...++..+.+.++..++.++.|.++||+|||+.+..+.....
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~-~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~   80 (338)
T COG0477           7 LALAALLLGLDLGLLSPALPLLLSTL---SLSSG--R-LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFL   80 (338)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHc---CCCch--h-HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHH
Confidence            44445555566777777888887765   21111  0 356899999999999999999999999999988888887666


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc-cchhHHHHHHHH-HHHhHHhHHHHhhHhh---
Q 011514           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLG-VLSASFVCGTLAARFL---  167 (484)
Q Consensus        93 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~g~~ig~~l~~~l---  167 (484)
                      ++.+...+..+ ...+.+.+.|+.+|++. +...+...+++.|+.|+ ++|+...+.... ...+|..++|.+++.+   
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477          81 LGTLLLALAPN-VGLALLLILRLLQGLGG-GGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHhCcc-chHHHHHHHHHHHHhhh-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666655 33688899999999755 67778999999999988 788999998888 5888888888777653   


Q ss_pred             ---hhHHHHHHHHHHHH
Q 011514          168 ---STTSAFQAATIVSM  181 (484)
Q Consensus       168 ---~~~~~f~~~~~~~~  181 (484)
                         +||..|........
T Consensus       159 ~~~~~~~~~~~~~~~~~  175 (338)
T COG0477         159 LLWGWRAAFLLAALLGL  175 (338)
T ss_pred             HhcchHHHHHHHHHHHH
Confidence               68886666554443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.70  E-value=5e-06  Score=85.88  Aligned_cols=134  Identities=16%  Similarity=0.129  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccc-cCchhHhHHHHHHHHHHHHHHHhccch-----hhHHHHHHHHHHhhhhccchhhH
Q 011514           54 GFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLTLPLTLSIIPLAILAYRRSI-----SFFYAYYALRTLTAMVCEGSINC  127 (484)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~~~~~~~~i~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~g~~~~  127 (484)
                      ..+...+....-+...+.|.++|+ +||++.+.++.++..++..+.++....     ......+++-.+..++ .|..-|
T Consensus        26 ~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G-~GgiKp  104 (654)
T TIGR00926        26 TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALG-TGGIKP  104 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhh-cccccc
Confidence            444555555556667779999997 599999999999999999888775321     1112234444444434 477778


Q ss_pred             hhhHHHhhcCCcc---chhHHHHHHHHHHHhHHhHHHHhhHhh-----------hhHHHHHHHHHHHHHHHHHHH
Q 011514          128 LALAYVADNISER---QRASAFGILLGVLSASFVCGTLAARFL-----------STTSAFQAATIVSMLAAAYMR  188 (484)
Q Consensus       128 ~~~~~i~~~~~~~---~r~~~~~~~~~~~~~g~~ig~~l~~~l-----------~~~~~f~~~~~~~~i~~~~~~  188 (484)
                      +..+...|.++++   +|.+.+.+...+.++|.++++.+...+           +|...|.+.++..++.++...
T Consensus       105 ~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       105 CVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             CchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999754   366788888889999999887776543           488888888877766655544

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.68  E-value=9.9e-07  Score=78.44  Aligned_cols=148  Identities=18%  Similarity=0.216  Sum_probs=105.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +..+|.+....+.......-....-|.+.++.+       +.|+...|-+.+.-..-.++.+|+.|.++||+||+...+.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rf-------GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRF-------GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA  335 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhh-------CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence            445666666666665555444445555666554       5555566777777788888999999999999999987765


Q ss_pred             H-HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           87 P-LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        87 ~-~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      + ++...++-....++.     +.=+.+..+.|+.. ..........++-..|+++.|.+.+..+...++|..+.|++++
T Consensus       336 ~a~~~tl~~H~~l~Ft~-----lsPy~~m~~lGLsy-sllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag  409 (459)
T KOG4686|consen  336 SACILTLLGHSGLFFTF-----LSPYTSMTFLGLSY-SLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAG  409 (459)
T ss_pred             HHHHHHHHHhhhHHhhh-----ccHHHHHHHHhhhH-HHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhh
Confidence            5 444555555544432     12245566778633 3333346788999999999999999999999999999999998


Q ss_pred             hh
Q 011514          166 FL  167 (484)
Q Consensus       166 ~l  167 (484)
                      .+
T Consensus       410 ~i  411 (459)
T KOG4686|consen  410 FI  411 (459)
T ss_pred             ee
Confidence            75

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.68  E-value=1.4e-05  Score=77.21  Aligned_cols=389  Identities=12%  Similarity=0.089  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----ccCchhHhH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRKAMLT   85 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grk~~l~   85 (484)
                      .++.+..++.++-.++..-.+|.++++..      -+.+-.+.|. .|....++- .-++|.++.|     |+||||..+
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~------~~~sy~q~~~-fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWi   74 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMA------KKVSYSQQAI-FSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWI   74 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhcccc------CCCChhHhee-eeeeechhH-HHHhhhhhhhhhcccccCCcchhh
Confidence            34566667777777777677888887610      0222223332 111111211 2345666666     899999866


Q ss_pred             HH-HHHHHHHHHHHHhcc----------c---------hhhH--HHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchh
Q 011514           86 LP-LTLSIIPLAILAYRR----------S---------ISFF--YAYYALRTLTAMVCEGSINCLALAYVADNISERQRA  143 (484)
Q Consensus        86 ~~-~~~~~i~~~~~~~~~----------~---------~~~~--~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~  143 (484)
                      +- ..+.++..+..+...          +         .+..  ..+...-++.-+.+ +....+...+.-.+..+++++
T Consensus        75 iP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~-ATQDIAVDGWALT~Ls~~n~~  153 (544)
T PF13000_consen   75 IPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLC-ATQDIAVDGWALTMLSPENVG  153 (544)
T ss_pred             hHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHH-ccCCceeehhhhhhcChhhcc
Confidence            43 344444444333222          0         0000  11122222222222 333446677777777788888


Q ss_pred             HHHHHHHHHHHhHHhHHHHhhHhhh-------h-------------HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCC
Q 011514          144 SAFGILLGVLSASFVCGTLAARFLS-------T-------------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDL  203 (484)
Q Consensus       144 ~~~~~~~~~~~~g~~ig~~l~~~l~-------~-------------~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~  203 (484)
                      .+..-...+.++|..++-.+--.+.       |             ..-..+.+.+.++..+++.++.+|.+..+..+ +
T Consensus       154 ~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg~~~l~~T~~v~~~k~E~~~~~~~~-~  232 (544)
T PF13000_consen  154 YASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWGWVFLIVTILVAFFKKEKPHSESLP-K  232 (544)
T ss_pred             hHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHHHHHHHHHHHHheEeecccccccCc-c
Confidence            7777666666666665543221110       0             11122344444455555556566655332211 1


Q ss_pred             CCCcccccccccCCCCCCCCccCcccCCCCchHHHHHH---hhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcC
Q 011514          204 TRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL---LRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN  280 (484)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  280 (484)
                      .+.....+.+.+....+.++.+....++..+.++..+.   +.+-|.+..+.+.....-+++.........=+.|. |++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlEk-G~~  311 (544)
T PF13000_consen  233 IEPINKSDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLEK-GLS  311 (544)
T ss_pred             ccccccccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHHc-CCC
Confidence            11000000000000001111110111112233333332   34568888888888888888888787777777776 999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcch---------------------------HHHHHhHHHHHHHHHHHhhc
Q 011514          281 KNQFADLMLIAGLAGTISQLLFMPLLAPILGEA---------------------------KLLSLGLFAACINMFICSIS  333 (484)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~---------------------------~~~~~~~~~~~~~~~~~~~~  333 (484)
                      .++.+....+..=..++.. ...++++.--.+.                           +....+...-.+..++..  
T Consensus       312 KE~LAl~~li~~P~qii~~-~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~--  388 (544)
T PF13000_consen  312 KEDLALLVLIDFPFQIILP-YYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALRPWLWAFWGRLVAALLAQ--  388 (544)
T ss_pred             HHHhHHHHHHhhhHHHHHH-HHhhhhhcCCCccccccccccccccccchhhhhhccchhhHHHHHHHHHHHHHHHHHH--
Confidence            9997766544433344444 3333333211110                           111111111001000000  


Q ss_pred             cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514          334 WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  413 (484)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  413 (484)
                                     .++..|-.++..+.+...         .++..-.+..+.....+....++-++..+|..=|+.+.
T Consensus       389 ---------------~iV~~fP~~g~v~~~Yf~---------lvI~~~~l~sf~stvmFVai~AFharISDP~IGGTYMT  444 (544)
T PF13000_consen  389 ---------------LIVYFFPSDGPVPTYYFL---------LVIIQHVLSSFMSTVMFVAIMAFHARISDPAIGGTYMT  444 (544)
T ss_pred             ---------------heEEeCCCCCCcchHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchHHHH
Confidence                           000111001111111110         01222334455566677788889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          414 CISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       414 ~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +.|++.++|+-.-..+.=++.|.+
T Consensus       445 LLNTvSNLGGtWP~~~vL~lVD~f  468 (544)
T PF13000_consen  445 LLNTVSNLGGTWPRTFVLWLVDYF  468 (544)
T ss_pred             HHHHHHhcCCCchHHHHHHHhhhc
Confidence            999999999988777776777754

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR01272 gluP glucose/galactose transporter

Probab=98.68  E-value=1.6e-06  Score=82.11  Aligned_cols=157  Identities=11%  Similarity=0.016  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      ..+...+..|+...........++.|.++.     ...+.+..+.++..+.+..+..++....+++.||+|+||.+..+.
T Consensus       141 ~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~-----~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~  215 (310)
T TIGR01272       141 HLVLGALGIFVYVGAEVSAGSFLVNFLSDP-----HALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNA  215 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            344444455554445666666777777643     123455667789999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh-
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL-  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l-  167 (484)
                      .+..++.++....++   ... ...-++.|++. +...|...+...+..|+ +.+++.++. ....+|..++|.+.|.+ 
T Consensus       216 ~l~~~~~~l~~~~~~---~~~-~~~~~l~g~~~-s~i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~la  288 (310)
T TIGR01272       216 FLAVLLSIGAALTHG---YVA-MWFVLALGLFN-SIMFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLA  288 (310)
T ss_pred             HHHHHHHHHHHHcCC---HHH-HHHHHHHHHHH-HHHHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHH
Confidence            888888776666655   222 23444677655 67778888888888774 345566665 56678889999877764 


Q ss_pred             ---hhHHHHHHHH
Q 011514          168 ---STTSAFQAAT  177 (484)
Q Consensus       168 ---~~~~~f~~~~  177 (484)
                         +.+.+|++..
T Consensus       289 d~~g~~~a~~v~~  301 (310)
T TIGR01272       289 DCLGIQLAFALPV  301 (310)
T ss_pred             HhccchHHHHHHH
Confidence               4466665433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=98.66  E-value=6.7e-06  Score=76.28  Aligned_cols=361  Identities=12%  Similarity=0.006  Sum_probs=194.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccc-----ccCch
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-----QYGRK   81 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D-----r~Grk   81 (484)
                      ++++..+.+...+.++-.++.. .+|.+.+..        +.|-+..+. .+..+.. .-.-+.|.++.|     |+|||
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak--------~vSyt~~a~-fS~ay~P-~sLKllWaPiVDs~y~k~~Grr   98 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK--------GVSYTSQAI-FSFAYWP-FSLKLLWAPIVDSVYSKRFGRR   98 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC--------Ccchhhhhh-hhhhhhH-HHHHHHHHhhhHHHHHHhhccc
Confidence            5667777777788888888888 889888643        222222232 2222222 223567999999     99999


Q ss_pred             hHhHH-HHHHHHHHHHHHHhccch--------hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHH
Q 011514           82 AMLTL-PLTLSIIPLAILAYRRSI--------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGV  152 (484)
Q Consensus        82 ~~l~~-~~~~~~i~~~~~~~~~~~--------~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  152 (484)
                      |..+. +..+.+..+.+.+.-.+.        +....+...-++.-+.+ +....+...+.-.+.++++.|.+......+
T Consensus        99 ksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnfla-AtQDIAVDgwALtmLs~e~lgyaST~q~Vg  177 (510)
T KOG3574|consen   99 KSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLA-ATQDIAVDGWALTMLSRENLGYASTCQSVG  177 (510)
T ss_pred             cceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHH-hhhhhhhhHHHHHhcCHhhcCchhHHHHHH
Confidence            87653 333333333333332110        11222222333444322 455567888888888889988888777777


Q ss_pred             HHhHHhHHHHhhHhh-----------hh---------HHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccc
Q 011514          153 LSASFVCGTLAARFL-----------ST---------TSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEET  212 (484)
Q Consensus       153 ~~~g~~ig~~l~~~l-----------~~---------~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~  212 (484)
                      .+.|..+|..+--.+           +|         ..-.++.+.+..++-.+..+.-+|.+....++           
T Consensus       178 ~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~~~~e-----------  246 (510)
T KOG3574|consen  178 QTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDESVDEE-----------  246 (510)
T ss_pred             HhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchhhhhh-----------
Confidence            777766664321110           11         11233444455555555544333332221111           


Q ss_pred             cccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHH
Q 011514          213 EGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAG  292 (484)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  292 (484)
                                     .+.......+.++...+-|.+..........-.++.+.....+.-+.|. |.+.++.+.......
T Consensus       247 ---------------~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~LkLle~-Gv~ke~Lal~~v~~~  310 (510)
T KOG3574|consen  247 ---------------LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTSLKLLEH-GVPKEELALIAVPLV  310 (510)
T ss_pred             ---------------hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccchHHHHc-CCChhHheeeeeehh
Confidence                           0111111222233345567777777777777888888888888878776 999988776653333


Q ss_pred             HHHHHHHHHHHHHhhhhhc------chHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhh--hhhHHH
Q 011514          293 LAGTISQLLFMPLLAPILG------EAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRK--QISVHV  364 (484)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~  364 (484)
                      -..++..... |+++....      |+....+........+..  ..+....                 +++  +....+
T Consensus       311 plqI~l~~~~-gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~--~~~~~~~-----------------~~G~~~~~~~i  370 (510)
T KOG3574|consen  311 PLQIALPLYI-GKWTAGPRPLNVFLKAVPYRLGGGLVQTALVW--WTPTLGH-----------------SDGTFPRGYYI  370 (510)
T ss_pred             hHHHhhhhhh-eeecCCCCcchHHHHhhhHHHHHHHHHHHHHh--hhccccc-----------------CCCceeechHH
Confidence            3333333222 33332111      111222222222221111  1111000                 000  000100


Q ss_pred             HHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          365 LLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +           .+..-.+.+......+....+.-++..||...|+.+.+.|+..++|+-.=..+..++.|..
T Consensus       371 l-----------~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~l  432 (510)
T KOG3574|consen  371 L-----------LITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGL  432 (510)
T ss_pred             H-----------HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccC
Confidence            0           0111223344444556667788889999999999999999999999988888888888865

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.65  E-value=7.3e-07  Score=89.94  Aligned_cols=152  Identities=15%  Similarity=0.155  Sum_probs=107.4

Q ss_pred             HHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhh----hhcc-hHHHHHhHHHHHHHH
Q 011514          253 VVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAP----ILGE-AKLLSLGLFAACINM  327 (484)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~g~-~~~~~~~~~~~~~~~  327 (484)
                      +..+..++.......+++.|+.+.+|.++..+|.++.+.-+...+.. ++.|+++|    |+|| |+.+..+....++++
T Consensus        13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~d-p~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~   91 (473)
T PRK10429         13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAIND-PIMGWIVNNTRSRWGKFKPWILIGTLANSVVL   91 (473)
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-chheeehhcCCCCCCCcchhHhhhhHHHHHHH
Confidence            34444555666777889999999999999999999999999999999 55599999    4587 556666777777776


Q ss_pred             HHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc-CCC
Q 011514          328 FICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV-GPN  406 (484)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-p~~  406 (484)
                      .++...++...                   ....+|             +.+...+...+.........++..|.. +++
T Consensus        92 ~llf~~p~~~~-------------------~~~~~~-------------~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~  139 (473)
T PRK10429         92 FLLFSAHLFEG-------------------TAQYVF-------------VCVTYILWGMTYTIMDIPFWSLVPTLTLDKR  139 (473)
T ss_pred             HHHHcCCCCCc-------------------cHHHHH-------------HHHHHHHHHHHHHHHcchHHhhhHHhCCCHH
Confidence            55543321111                   000000             122333556777777888888999988 578


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          407 EQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       407 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +|.+..+......++++.+.+.+...+.+..
T Consensus       140 eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~  170 (473)
T PRK10429        140 EREQLVPYPRFFASLAGFVTAGFTLPFVNYV  170 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999888888888777776666555443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.63  E-value=2.1e-06  Score=87.48  Aligned_cols=112  Identities=16%  Similarity=0.061  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhH
Q 011514          283 QFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISV  362 (484)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  362 (484)
                      +.+++.+...+++.+++ +..++++|++|||+.+..+.+...++.++.+++.+.+.          +             
T Consensus        90 ~~s~~~s~~~lga~~g~-l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~----------l-------------  145 (513)
T KOG0254|consen   90 RQGLLTSILNLGALVGS-LLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQ----------L-------------  145 (513)
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHH----------H-------------
Confidence            44899999999999999 77799999999999999999999999999999988777          3             


Q ss_pred             HHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          363 HVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                                     ...=++.|++.+........+.+|..|++.||...+..+....+|..++ .+.+...
T Consensus       146 ---------------~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~  201 (513)
T KOG0254|consen  146 ---------------IVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGT  201 (513)
T ss_pred             ---------------HHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhh
Confidence                           3344488999999989999999999999999999999999999888877 4444443

>PRK09669 putative symporter YagG; Provisional

Probab=98.63  E-value=5.2e-07  Score=90.32  Aligned_cols=149  Identities=11%  Similarity=0.107  Sum_probs=102.8

Q ss_pred             HHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcch-HHHHHhHHHHHHHHHHH
Q 011514          256 FFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEA-KLLSLGLFAACINMFIC  330 (484)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~-~~~~~~~~~~~~~~~~~  330 (484)
                      +..+........+++.|+.+.+|.++..+|.++.+.-+...+.. ++.|+++||    +||| +.+..+....++...+.
T Consensus        19 ~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~d-p~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~   97 (444)
T PRK09669         19 TACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTD-PLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLT   97 (444)
T ss_pred             hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHccc-ceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            33444455567788999999999999999999999999999999 556999998    5664 45556666666665544


Q ss_pred             hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhccc-CCCchh
Q 011514          331 SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQV-GPNEQG  409 (484)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-p~~~~g  409 (484)
                      ...++.+.                   ....+|             ......+.+.+.........++..|.. ++++|+
T Consensus        98 f~~p~~~~-------------------~~~~~~-------------~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~  145 (444)
T PRK09669         98 FYTPDFGA-------------------TGKIIY-------------ACVTYILLSLVYTAINVPYCAMPGAITNDPRERH  145 (444)
T ss_pred             HhCCCCCc-------------------chHHHH-------------HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHH
Confidence            44432111                   000000             122223445555566666778888877 457899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          410 KAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       410 ~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +..+.......+|..+++.+...+....
T Consensus       146 ~l~~~r~~~~~~G~~i~~~~~~pl~~~~  173 (444)
T PRK09669        146 SLQSWRFALSFIGGLIVSVIALPLVDIL  173 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999988888777666654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.56  E-value=7.8e-07  Score=86.17  Aligned_cols=163  Identities=17%  Similarity=0.228  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSI   92 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~   92 (484)
                      +++...+.+.+.+.+...+-.+++|.   +     -.....|........+-++.-++.+++.+|+|+-+++..++....
T Consensus       376 ff~~av~mG~g~~lv~tFLfWHled~---~-----~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~  447 (618)
T KOG3762|consen  376 FFFVAVVMGAGVGLVFTFLFWHLEDL---G-----GIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNV  447 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhc---C-----CcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHH
Confidence            45555667777788888887777765   3     223345777777888888888999999999999999999999999


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHH-HhHHhHHHHhhHh----h
Q 011514           93 IPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVL-SASFVCGTLAARF----L  167 (484)
Q Consensus        93 i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~-~~g~~ig~~l~~~----l  167 (484)
                      +=.+..+..+|   .|+.+-..+++|+.- +..+.+..+|+++..||+-|..+.++.+... ++|--+|.++||.    +
T Consensus       448 ~Rf~~~S~L~n---~W~vLPieilqgit~-aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f  523 (618)
T KOG3762|consen  448 GRFLYYSYLQN---PWMVLPIEILQGITH-ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF  523 (618)
T ss_pred             HHHHHHHHhcC---chheeeHHHHHHHHH-HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence            99999999999   899999999999865 7777899999999999999999999987554 7777777777776    4


Q ss_pred             hhHHHHHHHHHHHHHHHHHH
Q 011514          168 STTSAFQAATIVSMLAAAYM  187 (484)
Q Consensus       168 ~~~~~f~~~~~~~~i~~~~~  187 (484)
                      +-|..|.+.++.+++.+++.
T Consensus       524 g~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  524 GARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             hhHHHHHHHHHHHHHHHHHH
Confidence            66888888776666554443

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.56  E-value=3.2e-06  Score=76.09  Aligned_cols=116  Identities=18%  Similarity=0.133  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch----hhHHHHHHHHHHhhhhcc
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI----SFFYAYYALRTLTAMVCE  122 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~----~~~~~l~~~r~l~G~~~~  122 (484)
                      +.+..+...+.+...+|..+ +++.|.+.||+|++.++.+|.+...+|..+...+-+.    ..+|.+.+..++.|. +.
T Consensus        33 ~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~-s~  110 (250)
T PF06813_consen   33 GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGN-SS  110 (250)
T ss_pred             CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcc-cH
Confidence            44445667888888888876 5889999999999999999999999998887764221    135677766777664 33


Q ss_pred             chhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514          123 GSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus       123 g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      +....++.....+.+| ++||.+.|+.-...+++..+-..+..
T Consensus       111 ~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~  152 (250)
T PF06813_consen  111 CWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS  152 (250)
T ss_pred             HHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH
Confidence            4444555566667787 68999999999999998766554443

>TIGR00788 fbt folate/biopterin transporter

Probab=98.51  E-value=4.9e-06  Score=83.62  Aligned_cols=175  Identities=13%  Similarity=0.121  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----chHHHHHhHHH
Q 011514          248 LSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILG-----EAKLLSLGLFA  322 (484)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g-----~~~~~~~~~~~  322 (484)
                      +......++..... .......+.++++.+|.+..+.+.+.+...+...+-. + .+.++||++     ||+.+.++.++
T Consensus        28 ~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-F-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-H-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            33444456666666 6666678888888889999999899898888888865 5 499999996     66666666655


Q ss_pred             H-HHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          323 A-CINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       323 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      . .+.+..++..++...          .                           ......+.+++.+.......++..|
T Consensus       105 ~~~~~~~~l~~~~~~~~----------~---------------------------~~~~~~l~~~~~a~~dv~~da~~~e  147 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAK----------V---------------------------AAAFIFLAALAKALYDVLVDSLYSE  147 (468)
T ss_pred             HHHHHHHhcccccchHH----------H---------------------------HHHHHHHHHHHHHHHHHhHHHHHhh
Confidence            5 233333332222111          0                           1224446777777788888999999


Q ss_pred             ccCCCchhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccC
Q 011514          402 QVGPNEQGK---AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHT  471 (484)
Q Consensus       402 ~~p~~~~g~---~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (484)
                      ..+ ++++.   ..+......++|..+++.++|.+.+.. +.+.       .|.+.+++.++......+.+|+
T Consensus       148 ~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~-~~~~-------~f~~~a~l~ll~~~~~~~~~E~  211 (468)
T TIGR00788       148 RIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKT-LTRI-------LFLITAALLLLQLFVSNLSKER  211 (468)
T ss_pred             hhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhc-Ccch-------HHHHHHHHHHHHHHHHHhcccc
Confidence            988 54444   344444555689999999999999875 5444       4455555555544444455554

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.49  E-value=1.5e-06  Score=76.56  Aligned_cols=327  Identities=11%  Similarity=0.020  Sum_probs=161.8

Q ss_pred             HHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHH
Q 011514           17 VFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLA   96 (484)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~   96 (484)
                      .++...+..+..|.+-.+.+.+ ..+..  +     +|.+.-...-..++.+.+.|.++|+-|||+.-+.-++.+.++++
T Consensus        46 yslmmAgDWLQgPYvYyLYstY-gFgkG--~-----IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi  117 (454)
T KOG4332|consen   46 YSLMMAGDWLQGPYVYYLYSTY-GFGKG--D-----IGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI  117 (454)
T ss_pred             HHHHHhhhhhcCceeeeeehhc-CccCC--c-----cceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence            3444555566666654444333 11222  2     23333333445566677789999999999976655555555443


Q ss_pred             HHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHH-HhhcCCccchhHHHHHHHHHHHhH--------HhHHHHhhHh-
Q 011514           97 ILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY-VADNISERQRASAFGILLGVLSAS--------FVCGTLAARF-  166 (484)
Q Consensus        97 ~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~-i~~~~~~~~r~~~~~~~~~~~~~g--------~~ig~~l~~~-  166 (484)
                       .-.+++   +-.++++|.+-|+.. .....+..++ +.|..  |+|+.-.-+....++=+        .+++.+.+.. 
T Consensus       118 -TKhSpq---YkVLmVGR~LGGiaT-sLLFSaFEsWliaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~l  190 (454)
T KOG4332|consen  118 -TKHSPQ---YKVLMVGRVLGGIAT-SLLFSAFESWLIAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLL  190 (454)
T ss_pred             -hhcCCc---eEEEeehhhhhhHHH-HHHHHHHHHHHHHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHH
Confidence             334555   678899999999865 4444455554 55654  34544443433333222        2222222222 


Q ss_pred             -----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHH
Q 011514          167 -----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICL  241 (484)
Q Consensus       167 -----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (484)
                           +|--.||-.++.+..+...++..--.|.-.++.++                           +.-....+...+.
T Consensus       191 vd~~slGPVAPFdAAacfLaigmAvil~~W~ENygdps~~---------------------------kdlltqf~gaa~a  243 (454)
T KOG4332|consen  191 VDTFSLGPVAPFDAAACFLAIGMAVILSSWSENYGDPSEN---------------------------KDLLTQFKGAARA  243 (454)
T ss_pred             HHHhccCCCCchHHHHHHHHHHHHHHHhhhhhccCChhhh---------------------------HHHHHHhhHhHHH
Confidence                 23355666555444444333332222221111111                           0001122333333


Q ss_pred             hhccchhHHHHHHHHHHhchhhh-hHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHh
Q 011514          242 LRSSVTLSQAAVVAFFSGLSEGG-MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLG  319 (484)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~  319 (484)
                      +..++++..+-....++-...+. ..-|.|..-.+.-+   .--|.+++.+.+..++++.+....++++ ......+.+.
T Consensus       244 iaSD~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~---iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqiv  320 (454)
T KOG4332|consen  244 IASDEKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEE---IPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIV  320 (454)
T ss_pred             HhcchHHHHHHHHHHHHhhhhheeeeeecccCCCCccc---CCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHH
Confidence            44455544333333332222222 11122221111111   1137888888888999986654444332 2223455555


Q ss_pred             HHHHHHHHHHHhhccchhh-HHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHH
Q 011514          320 LFAACINMFICSISWSAWV-IKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSI  398 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  398 (484)
                      +.+..+.+.+...+..... +..+..                                -.+..+++-.+.+...|...-+
T Consensus       321 f~vs~a~l~Lpilt~~vsP~kes~~~--------------------------------s~i~F~~~E~cvGlfwPSimkm  368 (454)
T KOG4332|consen  321 FLVSIAALLLPILTSSVSPSKESPSE--------------------------------SLIGFCLFEACVGLFWPSIMKM  368 (454)
T ss_pred             HHHHHHHHHHHHHHhccCCCcCCchH--------------------------------HHHHHHHHHHHHhhcchHHHHH
Confidence            5555554444333221110 000000                                1334446667788889999999


Q ss_pred             HhcccCCCchhHHHHHHHHHHH
Q 011514          399 VSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       399 ~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                      -++..|++.|++.+-.+..--+
T Consensus       369 RsqyIPEearstimNfFRvPLn  390 (454)
T KOG4332|consen  369 RSQYIPEEARSTIMNFFRVPLN  390 (454)
T ss_pred             HHhhCCHHHHhhhhhheechhh
Confidence            9999999999877665544333

>PRK11462 putative transporter; Provisional

Probab=98.47  E-value=6.1e-06  Score=82.79  Aligned_cols=151  Identities=15%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             HHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchH-HHHHhHHHHHHHHH
Q 011514          254 VAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAK-LLSLGLFAACINMF  328 (484)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~~-~~~~~~~~~~~~~~  328 (484)
                      ..+..+........++..|..+..|.++..+|.++.+.-+...+.- ++.|+++||    +|||| .+.++.+..++.+.
T Consensus        17 g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~D-p~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~   95 (460)
T PRK11462         17 GDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISD-PCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV   95 (460)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHh-hhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence            3344455556667788999999999999999999999999999999 555999996    56654 55667666776666


Q ss_pred             HHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC-CCc
Q 011514          329 ICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG-PNE  407 (484)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~  407 (484)
                      ++...++...                   ....+|             +.....++..+.........++..|..+ +++
T Consensus        96 llf~~p~~s~-------------------~~~~~y-------------~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~e  143 (460)
T PRK11462         96 LAYSTPDLSM-------------------NGKMIY-------------AAITYTLLTLLYTVVNIPYCALGGVITNDPTQ  143 (460)
T ss_pred             HHHhCCCCCc-------------------chHHHH-------------HHHHHHHHHHHHHHHhccHHHHHHHhcCCHHH
Confidence            5544432111                   000011             1233335567777777788888888876 678


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      |++..+.......+|..+++.+...+.+..
T Consensus       144 Rt~l~s~r~~~~~iG~~~~~~~~~plv~~~  173 (460)
T PRK11462        144 RISLQSWRFVLATAGGMLSTVLMMPLVNLI  173 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999988888877777665

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.46  E-value=7.2e-07  Score=82.32  Aligned_cols=126  Identities=18%  Similarity=0.209  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhh-HHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc
Q 011514           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNISE  139 (484)
Q Consensus        61 ~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~  139 (484)
                      .+....+.++.+.+.||+|||+.+..+.+++++..++.....+-.. ..+++.+|++..    +.+ .+.+.|..|++|.
T Consensus       391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafis----g~f-qvaYvYtPEVyPT  465 (528)
T KOG0253|consen  391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFIS----GAF-QVAYVYTPEVYPT  465 (528)
T ss_pred             HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHh----chh-eEEEEecCcccch
Confidence            4455667778999999999999999999999999887766544211 245566776644    344 3789999999999


Q ss_pred             cchhHHHHHHHHHHHhHHhHHHHhhHhh--hhHHHHHHHHHHHHHHHHHHHHHcc
Q 011514          140 RQRASAFGILLGVLSASFVCGTLAARFL--STTSAFQAATIVSMLAAAYMRVFLK  192 (484)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~ig~~l~~~l--~~~~~f~~~~~~~~i~~~~~~~~lp  192 (484)
                      .-|+...|.-+....+|.++.|+++-..  .-..+..+.+.+.++..+...+ +|
T Consensus       466 avRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcf-fP  519 (528)
T KOG0253|consen  466 AVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCF-FP  519 (528)
T ss_pred             hhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHhee-ee
Confidence            9999999999999999999999998433  3345566666666666666655 55

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.5e-05  Score=73.93  Aligned_cols=167  Identities=17%  Similarity=0.120  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CchhHhHHHH
Q 011514           10 LSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPL   88 (484)
Q Consensus        10 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l~~~~   88 (484)
                      -|.+.+..-+.....+....-+|.+..|.        +.|..+.|++.+...+.++..++....+++|. ++|+......
T Consensus       210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~--------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~  281 (395)
T COG2807         210 AWQVTLFMGLQSLLYYIVIGWLPAILIDR--------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLAL  281 (395)
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHc--------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence            34444445566667777788899999887        66677889999999999999999999999965 6788888888


Q ss_pred             HHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc-cchhHHHHHHHHHHHhHHhHHHHhhHhh
Q 011514           89 TLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-RQRASAFGILLGVLSASFVCGTLAARFL  167 (484)
Q Consensus        89 ~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~ig~~l~~~l  167 (484)
                      ..+.++...+.+.+....+++    -++.|++. |..+|.+...+.+.+++ ++-++..+..|....+=..+||.+.|++
T Consensus       282 ~~~l~G~~G~~~~P~~~~~lw----~~llG~G~-G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~l  356 (395)
T COG2807         282 LLMLVGLVGLLLAPGQLPILW----ALLLGLGQ-GGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFL  356 (395)
T ss_pred             HHHHHHHHHHHHhhhhHHHHH----HHHHhCcc-chHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHH
Confidence            888888888888777332222    48889765 66668999999988864 4444555555555555566789888886


Q ss_pred             -----hhHHHHHHHHHHHHHHHHHHHH
Q 011514          168 -----STTSAFQAATIVSMLAAAYMRV  189 (484)
Q Consensus       168 -----~~~~~f~~~~~~~~i~~~~~~~  189 (484)
                           +|+.+........++..+..+.
T Consensus       357 hDa~gsw~~~~~~l~~~~i~m~i~Gl~  383 (395)
T COG2807         357 HDATGSWSAPLVLLALATLLMLIFGLR  383 (395)
T ss_pred             HHhcCChHHHHHHHHHHHHHHHHHHhh
Confidence                 6888887777666655555544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.44  E-value=1.7e-06  Score=88.53  Aligned_cols=121  Identities=16%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             hhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHh
Q 011514          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  354 (484)
                      +.++.+........++..++..++. ++.|.++||+|||+++..+..+..++-+..++.++.+.          ++..||
T Consensus       111 ~~~c~~~~~~~~~~s~~~~G~~vG~-~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~----------~~~~Rf  179 (521)
T KOG0255|consen  111 NLVCDSSTLVALGQSLFFLGVLVGS-LIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWM----------FLIFRF  179 (521)
T ss_pred             ceeeCcHhHHHHHHHHHHHHHHHHH-hhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHH----------HHHHHH
Confidence            3445666677777888888888888 77799999999999999999999999999999999888          666666


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                                                  +.|++.+........+..|.+++++|+.+..+ ......++.++|...+++.
T Consensus       180 ----------------------------l~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~  230 (521)
T KOG0255|consen  180 ----------------------------LSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYIT  230 (521)
T ss_pred             ----------------------------HHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence                                        88999999999999999999999999999999 8888888889999988888


Q ss_pred             H
Q 011514          435 A  435 (484)
Q Consensus       435 ~  435 (484)
                      .
T Consensus       231 ~  231 (521)
T KOG0255|consen  231 R  231 (521)
T ss_pred             h
Confidence            7

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.42  E-value=6.8e-06  Score=81.83  Aligned_cols=155  Identities=20%  Similarity=0.168  Sum_probs=112.8

Q ss_pred             hhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHh
Q 011514          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  354 (484)
                      +..+....+.+...+++.++.+++. +.++.+.||++..+.+....++..+..++....++.+.          ++++|+
T Consensus        74 edl~~~~~~l~~~~t~F~v~Yii~~-~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~----------~ialr~  142 (495)
T KOG2533|consen   74 EDLKLVGNQLGVLDTVFYVGYIIGQ-FPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPG----------LIALRF  142 (495)
T ss_pred             cccchhhhhhhhHHHHHHHHHHHHH-hhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHH----------HHHHHH
Confidence            5557888889999999999999999 67799999999666665555554444434434445554          555555


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLT  434 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~  434 (484)
                                                  +.|+..+...|....+++..+.+++||+.+|+.+...++|+++|+.+...++
T Consensus       143 ----------------------------llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~  194 (495)
T KOG2533|consen  143 ----------------------------LLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVF  194 (495)
T ss_pred             ----------------------------HHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhh
Confidence                                        8999999999999999999999999999999999999999999999999876


Q ss_pred             HhhhcCCCCcccCchHHHHHHHHHHHHHHHHH-Hhcc
Q 011514          435 ALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL-MMSH  470 (484)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  470 (484)
                      +.- +......| ...|++-+++.+...++.+ .+++
T Consensus       195 ~~~-~~~~~~gW-~~~FiI~G~i~~~~gi~~f~~lp~  229 (495)
T KOG2533|consen  195 KLN-GSGGLAGW-RWLFIIEGVITLVLGIVVFFFLPD  229 (495)
T ss_pred             hhc-CCCCcCCc-eeehhHHHHHHHHHHheEEEEecC
Confidence            632 11111111 1156666666555544443 3443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.42  E-value=0.00019  Score=67.13  Aligned_cols=152  Identities=14%  Similarity=0.036  Sum_probs=100.4

Q ss_pred             hhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHh
Q 011514          275 AQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSF  354 (484)
Q Consensus       275 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f  354 (484)
                      +.+|++..+++.++........+.. .+.|.+.||+|||+..+...++..++++.-- .++.+.                
T Consensus        62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g-~~~G~laD~~Grk~~cl~~cily~~scl~k~-~~~~~~----------------  123 (354)
T PF05631_consen   62 ESYGFSEHQIAILFVAGFASSAIFG-TFVGSLADRYGRKKACLLFCILYSLSCLTKH-SSNYPV----------------  123 (354)
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHHHHHHh-ccccHH----------------
Confidence            3579999999999988888888888 5559999999999998888888888876443 333333                


Q ss_pred             hhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh-----cccCCCchhHHHHHHH-HHHHHHHHHHHH
Q 011514          355 ITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS-----KQVGPNEQGKAQGCIS-GISSFANIVSPL  428 (484)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----~~~p~~~~g~~~g~~~-~~~~lg~~~gp~  428 (484)
                                            ++..=++-|++....+...-++..     +-.|++..+..++... ..+.+-.+.+..
T Consensus       124 ----------------------L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv  181 (354)
T PF05631_consen  124 ----------------------LLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGV  181 (354)
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhH
Confidence                                  133334666766666666555443     3356666677777666 334455566666


Q ss_pred             HHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          429 IFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       429 i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      ++..+.+.. +.....     +|..+..+.+++.+......+|+
T Consensus       182 ~a~~l~~~~-~~g~va-----PF~~a~~~l~~~~~~I~~~W~EN  219 (354)
T PF05631_consen  182 VANVLADWF-GFGPVA-----PFDAAIVLLAVAAVLILKTWPEN  219 (354)
T ss_pred             HHHHHHHHh-CCCCcc-----hHHHHHHHHHHHHHHHHhccccc
Confidence            666666665 332111     56777777777766665544444

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.41  E-value=0.0014  Score=65.32  Aligned_cols=235  Identities=11%  Similarity=0.119  Sum_probs=143.5

Q ss_pred             HHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhc--c-------ch-------------h------hHHHHHHHHHH
Q 011514           65 LVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYR--R-------SI-------------S------FFYAYYALRTL  116 (484)
Q Consensus        65 ~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~--~-------~~-------------~------~~~~l~~~r~l  116 (484)
                      .+.......++||++|.+++-.....+.....++++.  |       +.             .      ..|...+..+.
T Consensus        73 ~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~  152 (491)
T PF03219_consen   73 ILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVM  152 (491)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            4446678999999999999887777766666666553  1       10             0      01222233333


Q ss_pred             hhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhhh-------------hHHHHH-HHHH--HH
Q 011514          117 TAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS-------------TTSAFQ-AATI--VS  180 (484)
Q Consensus       117 ~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~-------------~~~~f~-~~~~--~~  180 (484)
                      .-+.++-...-.-..+..|.++.+|-.|..++...+.++|.++++.+...+.             |...+. ..++  +.
T Consensus       153 aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~  232 (491)
T PF03219_consen  153 AELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLIL  232 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHH
Confidence            3332212222246889999999999999999999999999998886665432             222211 1111  11


Q ss_pred             HHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhc
Q 011514          181 MLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGL  260 (484)
Q Consensus       181 ~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (484)
                      .+........+.+....+++.                  .+...+++.++.+.+.++.++.+.++|.+..+.+...+++.
T Consensus       233 g~~i~~~~~~~~~~vl~~~~~------------------~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi  294 (491)
T PF03219_consen  233 GIVIILLYRYMNKNVLTDPRF------------------YPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGI  294 (491)
T ss_pred             HHHHHHHHHHHHHHccCcccc------------------chhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence            112222222333221111110                  00011122234455788999999999999999998888888


Q ss_pred             hhhhhHHHHHHHHhhhcCcChhh----HHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHh
Q 011514          261 SEGGMQASFLYFLKAQFHFNKNQ----FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLG  319 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~  319 (484)
                      .....+..+-..+++.+. |+.+    .|......++...+.. ++++.+.+|+|-+....+.
T Consensus       295 ~inLvE~~wK~~lk~~~~-~~~~ysafmG~~~~~tGivtii~~-~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  295 SINLVEVVWKSQLKQLYP-DPNDYSAFMGKFSSWTGIVTIIMM-FLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             HHHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHh
Confidence            888877777777777653 4443    3445566677777777 7778999999877766554

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.38  E-value=2.1e-05  Score=70.82  Aligned_cols=163  Identities=12%  Similarity=0.189  Sum_probs=104.1

Q ss_pred             HHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHH
Q 011514          268 SFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVF  347 (484)
Q Consensus       268 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (484)
                      .+...+++.+|+|.+|...+-....++..++  +..|.+.|+.|++.++.+|.....+++..+...-+...         
T Consensus        23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G--~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i---------   91 (250)
T PF06813_consen   23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG--ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI---------   91 (250)
T ss_pred             hhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc--HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc---------
Confidence            3444577888999999888888777777653  66699999999999999999999999887765433221         


Q ss_pred             HHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 011514          348 KLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       348 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                                ...++|.            +.....+.+.+....+........+.+| ++||++.|+.-....+++.+-.
T Consensus        92 ----------~~~~~~~------------~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t  148 (250)
T PF06813_consen   92 ----------PSLPVWL------------MCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT  148 (250)
T ss_pred             ----------CccchHH------------HHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH
Confidence                      0011111            1222223344444444555555567888 6899999999999998877777


Q ss_pred             HHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCC
Q 011514          428 LIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       428 ~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+...+++.   ....+     .++.+.....++++..++.|+.+
T Consensus       149 ~i~~~~f~~---~~~~f-----ll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  149 QIYSAFFGD---DPSSF-----LLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             HHHHHHcCC---ChHHH-----HHHHHHHHHHHHHHHhhheeccC
Confidence            666655543   11222     33334334444455555555443

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.33  E-value=5.5e-06  Score=80.79  Aligned_cols=151  Identities=16%  Similarity=0.165  Sum_probs=112.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|++..+++..++...+.++....+..|.+..+  |.++     ....+.......+.+++.+++.++++|+|+|+++.+
T Consensus       235 Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~l--g~~~-----l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~  307 (467)
T COG2211         235 NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVL--GDPE-----LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLI  307 (467)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEc--CChH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHH
Confidence            456666677777777788888888887776543  2222     234566777778888889999999999999999999


Q ss_pred             HHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc-------cchhHHHHHHHHHHHhHHhH
Q 011514           87 PLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE-------RQRASAFGILLGVLSASFVC  159 (484)
Q Consensus        87 ~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~g~~i  159 (484)
                      +.++..++.++..+.+. +..+..++..++.+++. +...+...++++|..+-       +.-|...+.+....-+|..+
T Consensus       308 ~~~~~~i~~~~~~f~~~-~~~~l~~~~~~i~~~g~-~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~al  385 (467)
T COG2211         308 GLLLLAVGYLLLYFTPA-GSVVLIVVALIIAGVGT-GIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLAL  385 (467)
T ss_pred             HHHHHHHHHHHHHhhcC-cchHHHHHHHHHHHHHh-hccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHH
Confidence            99999999999988872 22677788888888655 66777889999988863       22355667777777777777


Q ss_pred             HHHhhHh
Q 011514          160 GTLAARF  166 (484)
Q Consensus       160 g~~l~~~  166 (484)
                      +..+.+.
T Consensus       386 a~~~~g~  392 (467)
T COG2211         386 AGFIPGW  392 (467)
T ss_pred             HHHHHHH
Confidence            7655544

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.31  E-value=5.5e-06  Score=78.97  Aligned_cols=123  Identities=15%  Similarity=0.178  Sum_probs=90.6

Q ss_pred             cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhh
Q 011514          279 FNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRK  358 (484)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  358 (484)
                      +++...+.+.....++.++++ ++.|++.||+|||+++...++++.++.+..+.......   +......+...||    
T Consensus        81 ~ps~i~~~Vn~~A~vGti~GQ-l~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~---~~~~m~~L~~~R~----  152 (538)
T KOG0252|consen   81 YPSGVLALVNAAALVGTIFGQ-LFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTS---PLGVMMTLCFFRF----  152 (538)
T ss_pred             CCchHHHHHHHHHHHHHHHHH-HHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCC---CcchhhHHHHHHH----
Confidence            344556778888889999999 66699999999999999999888888876655432211   0001112333444    


Q ss_pred             hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          359 QISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                                              ++|+|.+.-+|...++.+|...++.||+-.+..-..+..|...|..+.-.+
T Consensus       153 ------------------------~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv  203 (538)
T KOG0252|consen  153 ------------------------LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIV  203 (538)
T ss_pred             ------------------------HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHH
Confidence                                    889999999999999999999999999988877777776666555544433

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.30  E-value=3.5e-06  Score=60.85  Aligned_cols=70  Identities=21%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           13 LFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        13 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      +-...|+...+.+...|.+|.+.++.        +.+..++|.+.++..+...++.|++|.++||++|++..+.....
T Consensus         5 lk~~yf~~f~~~g~~~Pfl~~~~~~~--------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    5 LKAFYFFYFAALGCLYPFLPLYLKQL--------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHhhhhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            33455667778889999999998765        67778889999999999999999999999999998877765544

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.28  E-value=4.4e-05  Score=79.04  Aligned_cols=173  Identities=11%  Similarity=0.024  Sum_probs=120.0

Q ss_pred             hhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHhHHHHHHHHHHHhhccchhhH
Q 011514          261 SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFAACINMFICSISWSAWVI  339 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (484)
                      ++++....+..|+.+.+|++..++..++.......-+.. ++++++.|+ +|+++.+.++.++..++..++.+.......
T Consensus         2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~p-ilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~   80 (654)
T TIGR00926         2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTP-LIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG   80 (654)
T ss_pred             ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            456777788889888899999888777777777677776 777999995 799999999999988888877664321110


Q ss_pred             HHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCC---chhHHHHHHH
Q 011514          340 KIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPN---EQGKAQGCIS  416 (484)
Q Consensus       340 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~  416 (484)
                                       +... .            ........+...|.+..-|...+...+.++++   ++-+.+.+..
T Consensus        81 -----------------~~~~-~------------~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY  130 (654)
T TIGR00926        81 -----------------HPLH-D------------LLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFY  130 (654)
T ss_pred             -----------------cchH-H------------HHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHH
Confidence                             0000 0            00144555778888889999999999988754   3667888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCC--CCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          417 GISSFANIVSPLIFSPLTALFLSKG--APFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       417 ~~~~lg~~~gp~i~g~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ...++|+.+++.+.+.+.+..+...  ..|   ...|.+.+++.+++.+....
T Consensus       131 ~~iNiGSlis~~i~~~l~~~~~~fg~~~~~---~~aF~i~~i~m~ia~lvf~~  180 (654)
T TIGR00926       131 FAINAGSLISTIITPILRGDVGCFGCQDCY---PLAFGVPAILMILALIVFMA  180 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccccCcch---HHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998875432211  111   11456666666665554443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.26  E-value=7.6e-05  Score=70.99  Aligned_cols=169  Identities=18%  Similarity=0.168  Sum_probs=129.4

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccc-ccCchhHhHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSD-QYGRKAMLTLPLT   89 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~D-r~Grk~~l~~~~~   89 (484)
                      ...+...++..+++++.-+++-+|-       .+-++.+..++.-+.+....|.+++-...|++.. |.++|+.-..++.
T Consensus       211 ~~f~~fl~l~t~a~~~QD~iLEPyg-------g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~  283 (403)
T PF03209_consen  211 RRFFVFLFLGTLAFFMQDVILEPYG-------GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCL  283 (403)
T ss_pred             hHHHHHHHHHHHHHHhhHHHcCCch-------hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            3445556666666666666666664       4445777778889999999999999999998887 6778888888998


Q ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhh--
Q 011514           90 LSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFL--  167 (484)
Q Consensus        90 ~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l--  167 (484)
                      ..+++..+..++...+..+.+...-++.|++. |.+.....+...|..++++.|..+|.+.....++.-+|..+++..  
T Consensus       284 ~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~-G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D  362 (403)
T PF03209_consen  284 LGALAFALIILAGPLGSPWLFRPGVFLLGLGN-GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD  362 (403)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888777665543333688899999999755 888888999999999999999999999999999888888887652  


Q ss_pred             ------------hhHHHHHHHHHHHHHHHHHH
Q 011514          168 ------------STTSAFQAATIVSMLAAAYM  187 (484)
Q Consensus       168 ------------~~~~~f~~~~~~~~i~~~~~  187 (484)
                                  ++..+|.+.++..+++..+.
T Consensus       363 ~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  363 LVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence                        34567777776555554444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.19  E-value=7.2e-05  Score=73.31  Aligned_cols=153  Identities=16%  Similarity=0.154  Sum_probs=107.1

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhh-hcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-hHHHHHhHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKA-QFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGE-AKLLSLGLFAA  323 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~  323 (484)
                      |.++...+..++.......+....-.|+++ ..+-+.+-.|+..+...++..+.+ +..+++.+|.+. |+.++.+.+++
T Consensus        34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~-liF~~Ws~k~~~~k~Pli~s~ii~  112 (488)
T KOG2325|consen   34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFS-LIFGIWSNKTGSVKKPLIVSFLIA  112 (488)
T ss_pred             HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcc-hhhcccccccCCcccCHHHHHHHH
Confidence            445556666666666665554444455655 237777888999999999999999 555888988775 77788899888


Q ss_pred             HHHHHHHh-hc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHh
Q 011514          324 CINMFICS-IS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVS  400 (484)
Q Consensus       324 ~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  400 (484)
                      .++.++.. +.  ++.+.        +.+                            ++.=++.|++.+ ......++++
T Consensus       113 ~~g~llY~~l~~~~~~~~--------y~m----------------------------L~~R~l~Gvg~~-n~a~lR~Y~a  155 (488)
T KOG2325|consen  113 IIGNLLYLALAYVPNGVK--------YLM----------------------------LVARILTGVGVG-NFAVLRAYIA  155 (488)
T ss_pred             HHHHHHHHHHHhcccchH--------HHH----------------------------HHHHHHcCcCcc-cHHHHHHHHH
Confidence            88888773 22  22121        112                            222225555544 3456788889


Q ss_pred             cccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          401 KQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       401 ~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +..-.++|.++++..+....+|.++||.+...+...
T Consensus       156 ~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~L  191 (488)
T KOG2325|consen  156 DASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPL  191 (488)
T ss_pred             hccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhh
Confidence            888889999999999998899999999887665543

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.11  E-value=9.8e-05  Score=61.37  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhc
Q 011514           57 QAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADN  136 (484)
Q Consensus        57 ~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~  136 (484)
                      .++......++.++.+.+.+++|.|+.++++.+...+-..... -++   .+.++.+-++.|++. +...++...++.+.
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~---~~~l~~~s~l~G~~~-a~lW~aqg~ylt~~  117 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPN---SYTLYPASALLGFGA-ALLWTAQGTYLTSY  117 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhh---HHHHHHHHHHHhhhh-HHhhHhhhHHHHHc
Confidence            3445555666677788899999999999999998886665543 445   588899999999755 78888889999999


Q ss_pred             CCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514          137 ISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus       137 ~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      .++++|++..++.-.....+.++|.+..-
T Consensus       118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~  146 (156)
T PF05978_consen  118 STEETIGRNTGIFWAIFQSSLIFGNLFLF  146 (156)
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999888888888876543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.10  E-value=2e-05  Score=57.35  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             HHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHh
Q 011514           21 GFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAY  100 (484)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~  100 (484)
                      +++...+.|.+|.+.+|.        +.+..+.|++.+...+|++++++...++.++..+++.+..+.+...+..+.+++
T Consensus         5 GigRFayTplLP~M~~~~--------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~   76 (85)
T PF06779_consen    5 GIGRFAYTPLLPLMQADG--------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL   76 (85)
T ss_pred             hhHHHHHHhHhHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            456678899999998775        677778899999999999999999999999988899999999999999999999


Q ss_pred             ccc
Q 011514          101 RRS  103 (484)
Q Consensus       101 ~~~  103 (484)
                      .++
T Consensus        77 ~~~   79 (85)
T PF06779_consen   77 THS   79 (85)
T ss_pred             Hhc
Confidence            988

Note that many members are hypothetical proteins.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.02  E-value=9.6e-08  Score=95.87  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=95.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhcc---chhhHHHhhhhHHHHHHHHhhhhh
Q 011514          282 NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISW---SAWVIKIFFNKVFKLLLLSFITRK  358 (484)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~f~~~~  358 (484)
                      .+.+...+...++..+++ ++.|++.||+|||+.+..+..+..++.++..+.+   +.+.          +         
T Consensus        46 ~~~~~~~~~~~~g~~~G~-~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~---------  105 (451)
T PF00083_consen   46 LLSSLLTSSFFIGAIVGA-LIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWM----------L---------  105 (451)
T ss_pred             HHHHHHHHHHHhhhcccc-ccccccccccccccccccccccccccccccccccccccccc----------c---------
Confidence            345778888888899998 7779999999999999999999999999998888   6665          2         


Q ss_pred             hhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          359 QISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPL  433 (484)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l  433 (484)
                                         .+.-.+.|++.+...+....++.|..|+++||+..++.+....+|..++..+.-.+
T Consensus       106 -------------------~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~  161 (451)
T PF00083_consen  106 -------------------LIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIV  161 (451)
T ss_pred             -------------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                               33344889999999999999999999999999999999999888888777665433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.00  E-value=0.0064  Score=62.08  Aligned_cols=132  Identities=18%  Similarity=0.167  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhccccc-CchhHhHHHHHHHHHHHHHHHhccch----------------------hhHHHH
Q 011514           54 GFQQAIIGLGTLVMMPVIGNLSDQY-GRKAMLTLPLTLSIIPLAILAYRRSI----------------------SFFYAY  110 (484)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l~~~~~~~~i~~~~~~~~~~~----------------------~~~~~l  110 (484)
                      .-..+.+.-.+....+..+.++|-| ||-+.+.++.++..++..+..++...                      .....+
T Consensus        76 a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~  155 (571)
T KOG1237|consen   76 ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVL  155 (571)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHH
Confidence            3445555666666677789999976 89899999888888876554432110                      112345


Q ss_pred             HHHHHHhhhhccchhhHhhhHHHhhcCC---cc---chhHHHHHHHHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHH
Q 011514          111 YALRTLTAMVCEGSINCLALAYVADNIS---ER---QRASAFGILLGVLSASFVCGTLAARF----LSTTSAFQAATIVS  180 (484)
Q Consensus       111 ~~~r~l~G~~~~g~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~  180 (484)
                      +.+.-+..++. |..-|+..+.-+|.++   ++   .+...+.++....+.|..++-.+...    .+|...|.+..+..
T Consensus       156 ~~~l~lia~G~-gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~  234 (571)
T KOG1237|consen  156 YGALYLIALGA-GGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLN  234 (571)
T ss_pred             HHHHHHheecc-CCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHH
Confidence            55555555444 6677899999999998   22   22367788888888888887655543    58888888777665


Q ss_pred             HHHHHH
Q 011514          181 MLAAAY  186 (484)
Q Consensus       181 ~i~~~~  186 (484)
                      .++.++
T Consensus       235 ~lai~i  240 (571)
T KOG1237|consen  235 ALAILI  240 (571)
T ss_pred             HHHHHH
Confidence            554443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.98  E-value=0.021  Score=55.84  Aligned_cols=249  Identities=12%  Similarity=0.075  Sum_probs=153.1

Q ss_pred             HHHHHHHHHHH-HHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccc-------------------h-------
Q 011514           52 LSGFQQAIIGL-GTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRS-------------------I-------  104 (484)
Q Consensus        52 ~~g~~~s~~~l-~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~-------------------~-------  104 (484)
                      ...++-+..-+ ..++..++.+.+.+++.|.+++.+-...+....+++++.-.                   .       
T Consensus        62 ~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~  141 (509)
T COG3202          62 SISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWF  141 (509)
T ss_pred             hhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceee
Confidence            34566565566 56677788999999999999999888888888777776411                   0       


Q ss_pred             ------hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhhhh---------
Q 011514          105 ------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLST---------  169 (484)
Q Consensus       105 ------~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~---------  169 (484)
                            +.+..++++.=+.|-   -...-.-.....|.+..+|-.|..+..+...+++.+++..+...++-         
T Consensus       142 ili~~~Ws~s~~Yi~aELWgs---lV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~~~~~~~  218 (509)
T COG3202         142 ILIVGEWSYSLFYIMAELWGS---LVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRDALASEF  218 (509)
T ss_pred             eEeecchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhHhHHH
Confidence                  111222333333331   12222567788999999999999999999999999988877766431         


Q ss_pred             -----HHHHHHHHHHHHHHHHHHHHHccc----CCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHH
Q 011514          170 -----TSAFQAATIVSMLAAAYMRVFLKD----DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLIC  240 (484)
Q Consensus       170 -----~~~f~~~~~~~~i~~~~~~~~lpe----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (484)
                           +..+.+.+....++... .+++..    +|+...+.                     ..+++.++.+.++.+.++
T Consensus       219 ~~~~~~~~~~vi~~~~~i~~~l-~~~~~r~il~~~~f~~~~---------------------~~kk~~~k~k~~~~~s~k  276 (509)
T COG3202         219 KDLLLQILFIVIVILGIIAILL-YRYINRNVLTDPLFYLRA---------------------KKKKKKKKLKLGLIESFK  276 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccCcchhHHH---------------------hcccccccccCcHHHHHH
Confidence                 22233333233333322 222322    22210000                     011112233457888899


Q ss_pred             HhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhH---HHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH
Q 011514          241 LLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQF---ADLMLIAGLAGTISQLLFMPLLAPILGEAKLLS  317 (484)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~  317 (484)
                      .+.++|.++.+.+...+++.+...+....-.-.++.+..+.+..   |.+....++...+.....++.+.+|.|-.....
T Consensus       277 ~i~~SkyL~~ial~vl~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv~~v~~~~~~s~~ir~~GW~~~Al  356 (509)
T COG3202         277 MILRSKYLGAIALLVLAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVVSLVVFLFPGSNLIRRVGWFTGAL  356 (509)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHH
Confidence            99999999999999998888888777766665555544333322   334455566655566577788888888666555


Q ss_pred             HhHHHHHH
Q 011514          318 LGLFAACI  325 (484)
Q Consensus       318 ~~~~~~~~  325 (484)
                      +.-++..+
T Consensus       357 itPiv~li  364 (509)
T COG3202         357 ITPLVMLI  364 (509)
T ss_pred             HHHHHHHH
Confidence            54444333

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=97.92  E-value=4.8e-05  Score=68.63  Aligned_cols=136  Identities=13%  Similarity=0.055  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHH
Q 011514           53 SGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAY  132 (484)
Q Consensus        53 ~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~  132 (484)
                      .|.+.-.-.+..++..+......||+---.=..+..++.+.+..+.+++++   .++-+.+-.+..+++ |.--. ..--
T Consensus        64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s---~~~sL~GV~~aSiss-GlGEi-TFL~  138 (409)
T KOG3880|consen   64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS---VPMSLLGVVFASISS-GLGEI-TFLA  138 (409)
T ss_pred             cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc---hhHHHhhhhhhhhcC-Cccee-ehhh
Confidence            366677778888888888899999875443344566778888899999999   777777777776543 33322 2222


Q ss_pred             HhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 011514          133 VADNISERQRASAFGILLGVLSASFVCGTLAARF------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (484)
Q Consensus       133 i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~  197 (484)
                      .+..+++    ...+.++.+.+.+.++|..--..      +.-|...++...+.++.+..-++.+++++..
T Consensus       139 lss~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pes~  205 (409)
T KOG3880|consen  139 LSSRYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPESV  205 (409)
T ss_pred             hhccCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCccc
Confidence            2222322    22333333334444555432222      2447777777777777766666666665443

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.89  E-value=0.00011  Score=52.98  Aligned_cols=71  Identities=21%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          250 QAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      .+-...++...+.+....++|.|+++. |+|+.++|.+.++..+...++. .+.|+++||.++++........
T Consensus         4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~~-Gl~~~~iGil~~i~~~~~~~~~-pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen    4 PLKAFYFFYFAALGCLYPFLPLYLKQL-GLSPSQIGILSAIRPLIRFLAP-PLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHhhhhc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCccHHHHHHHHH
Confidence            344566777778888999999999985 9999999999999999999999 5559999999998877655543

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.87  E-value=0.0074  Score=59.72  Aligned_cols=52  Identities=12%  Similarity=0.071  Sum_probs=42.2

Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  429 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i  429 (484)
                      .+.+.++|+..|........+..+.+++++|..+-.+....-.+|-.+|..+
T Consensus       376 ~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       376 IILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688999999989888899999998889888888877777777777665

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.86  E-value=0.00058  Score=67.84  Aligned_cols=160  Identities=18%  Similarity=0.249  Sum_probs=104.6

Q ss_pred             HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-----cchHHHHHhHHHHHHHHHHHhhccchhhHHH
Q 011514          267 ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-----GEAKLLSLGLFAACINMFICSISWSAWVIKI  341 (484)
Q Consensus       267 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (484)
                      .....|+++.+|.++.+...+.....+-..+-- +. |.++|-+     +||.-+.++..+..++...++..+....   
T Consensus        10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp-~~-g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~---   84 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQLQRLSSLASLPWSIKP-LY-GLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASES---   84 (433)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHhCchHHhh-hH-HhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccc---
Confidence            345567888899999998888877777666553 55 8999964     3555666677776666665555443111   


Q ss_pred             hhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC--CCchhHHHHHHHHHH
Q 011514          342 FFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG--PNEQGKAQGCISGIS  419 (484)
Q Consensus       342 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p--~~~~g~~~g~~~~~~  419 (484)
                                                     ......+...+..++.........+...|...  ++.+|..++......
T Consensus        85 -------------------------------s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~  133 (433)
T PF03092_consen   85 -------------------------------SAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVR  133 (433)
T ss_pred             -------------------------------hhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHH
Confidence                                           00001333445667777777777777777762  234888999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          420 SFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       420 ~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      .+|+.++..+.|.+.+.. +++..       |.+.+.+..+..+......+
T Consensus       134 ~~G~lv~~~l~G~l~~~~-~~~~~-------f~i~~~~~~l~~~~~~~~~~  176 (433)
T PF03092_consen  134 SVGSLVGSLLSGPLLDSF-GPQGV-------FLISAALPLLMLIVALFLLE  176 (433)
T ss_pred             HHHHHHHHHhhhhhhhcC-CCeEE-------ehHHHHHHHHHHHHHHHhhh
Confidence            999999999999999875 55543       34444444444434444433

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.83  E-value=0.00082  Score=64.48  Aligned_cols=160  Identities=13%  Similarity=-0.021  Sum_probs=99.8

Q ss_pred             chhHHHHHHHHHHhchhhh-hH--HHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGG-MQ--ASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      ++-|..++...+.++.... ..  .-...|.++.|| +....-+...++.+..+... +.+-|+.||+|-|....++...
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~g-f~~mw~ldk~GLR~a~llgt~l  118 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFG-FAAMWILDKFGLRTALLLGTVL  118 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHh-hHHHHhhcccchHHHHHHHHHH
Confidence            3334444444444444422 22  234446777778 66666778888888888887 7778999999999999999999


Q ss_pred             HHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcc
Q 011514          323 ACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQ  402 (484)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  402 (484)
                      .+++..+=.....+...                    ...|          .........+.+.........-.-+..-.
T Consensus       119 n~iGa~Ir~iss~p~v~--------------------~~f~----------~~l~~~Gq~iaa~Aq~Fim~lPskiA~~W  168 (480)
T KOG2563|consen  119 NGIGAWIRLISSLPFVP--------------------PLFR----------RPLTHTGQSIAAAAQPFILGLPSKIAAVW  168 (480)
T ss_pred             HHHHHHHhhhccCcccc--------------------ccch----------hhhhHHhHHHHHHhhhHhhccccHHHHhh
Confidence            98888765444332110                    0000          00012222233333322222222344456


Q ss_pred             cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          403 VGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       403 ~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      +|+++|+.+..+..+.+.+|..++-.+...+....
T Consensus       169 F~~~qra~A~~~~v~~n~LGvavg~llppilV~~~  203 (480)
T KOG2563|consen  169 FPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS  203 (480)
T ss_pred             CCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence            89999999999999999999999888888777763

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.81  E-value=0.00066  Score=67.33  Aligned_cols=131  Identities=15%  Similarity=0.149  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHh
Q 011514          292 GLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILK  371 (484)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  371 (484)
                      ++...+.+ .+.|.++||+|||..+........+....+.+..  |.                                 
T Consensus        72 ~~~~~i~s-~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~--~~---------------------------------  115 (463)
T KOG2816|consen   72 GLLTLISS-PLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG--YW---------------------------------  115 (463)
T ss_pred             HHHHHHHH-hhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH--HH---------------------------------
Confidence            56677777 5559999999999999888887777666655444  22                                 


Q ss_pred             hhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHH
Q 011514          372 SIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSI  451 (484)
Q Consensus       372 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~  451 (484)
                            .+...-...+.+.......+++++...+++|....|+.+.....+..++|.+++.+.... +...       ++
T Consensus       116 ------~~~~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~-~~a~-------~f  181 (463)
T KOG2816|consen  116 ------FFLLLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFL-GIAL-------VF  181 (463)
T ss_pred             ------HhhhcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-CchH-------HH
Confidence                  111112223445566778889999999999999999999999999999999999999874 5444       55


Q ss_pred             HHHHHHHHHHHHHHHHhccCC
Q 011514          452 MCIGLASMVAFIQSLMMSHTP  472 (484)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~  472 (484)
                      .+..+..++........-++.
T Consensus       182 ~ia~~~~~~~~~y~~~~l~Es  202 (463)
T KOG2816|consen  182 LIAAASGILSLLYMLLFLPES  202 (463)
T ss_pred             HHHHHHHHHHHHHHhhccccc
Confidence            677666666666555444443

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.56  E-value=0.0076  Score=50.17  Aligned_cols=107  Identities=16%  Similarity=0.080  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHH
Q 011514          289 LIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLK  368 (484)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  368 (484)
                      ++......+.. ++.+.+.+++|.|+.+.++.+...+-..... -++.+.                              
T Consensus        44 ai~Y~~~~~s~-l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~~~~~------------------------------   91 (156)
T PF05978_consen   44 AILYGSFAISC-LFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YPNSYT------------------------------   91 (156)
T ss_pred             HHHHHHHHHHH-HhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hhhHHH------------------------------
Confidence            33344445555 6678899999999999999988876544442 233333                              


Q ss_pred             HHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          369 ILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       369 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                              +.....+.|++.+......-.++.+..+++.+++..|+.-.+.+.+.++|..+.-.+..
T Consensus        92 --------l~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~~  150 (156)
T PF05978_consen   92 --------LYPASALLGFGAALLWTAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIFQ  150 (156)
T ss_pred             --------HHHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    25666789999999999999999999999999999999999999888888877655544

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.45  E-value=0.08  Score=50.91  Aligned_cols=50  Identities=14%  Similarity=0.064  Sum_probs=35.3

Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHH
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                      +....++|+..|........+..+.+|++++..+-.+....-..|-..|.
T Consensus       347 ~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~  396 (406)
T KOG1479|consen  347 IFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGS  396 (406)
T ss_pred             HHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence            55666889999988888889999999877775555555444444444443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=97.23  E-value=0.02  Score=53.29  Aligned_cols=137  Identities=16%  Similarity=0.148  Sum_probs=94.8

Q ss_pred             chhhhhHHHHHHHHhhhcCcCh--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccc--
Q 011514          260 LSEGGMQASFLYFLKAQFHFNK--NQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS--  335 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--  335 (484)
                      ..........+.+..+. +.+.  ...+...+...+...++. +..|++.||.|||+.+..+......+.+...+...  
T Consensus        16 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (338)
T COG0477          16 LDLGLLSPALPLLLSTL-SLSSGRLLYGLLLSAFFLGYAIGS-LLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVG   93 (338)
T ss_pred             HhcchHHHHHHHHHHHc-CCCchhHHHHHHHHHHHHHHHHHh-hhhhhccccccchHHHHHHHHHHHHHHHHHHhCccch
Confidence            33344444566655554 4443  356888888888888887 77799999999997777776654444444444443  


Q ss_pred             hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC-CchhHHHHH
Q 011514          336 AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP-NEQGKAQGC  414 (484)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~  414 (484)
                      .+.                                      ........+++.+...+...++..+..|+ ++|+...+.
T Consensus        94 ~~~--------------------------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (338)
T COG0477          94 LAL--------------------------------------LLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGL  135 (338)
T ss_pred             HHH--------------------------------------HHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence            222                                      12222236777778888999999999997 678998898


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHh
Q 011514          415 ISG-ISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       415 ~~~-~~~lg~~~gp~i~g~l~~~  436 (484)
                      ... ...++..++|.+.+.+.+.
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~  158 (338)
T COG0477         136 VTLGAGALGLALGPLLAGLLLGA  158 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            888 5788888999888777765

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.21  E-value=0.0059  Score=59.55  Aligned_cols=105  Identities=16%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             hHhHHHHHHHHHHHHHHHhccchh------hHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCcc---chhHHHHHHHHH
Q 011514           82 AMLTLPLTLSIIPLAILAYRRSIS------FFYAYYALRTLTAMVCEGSINCLALAYVADNISER---QRASAFGILLGV  152 (484)
Q Consensus        82 ~~l~~~~~~~~i~~~~~~~~~~~~------~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~  152 (484)
                      |.+.++.++..+|.++..++....      ..+.++++-.+.+++. |..-|...++.+|.++++   +|.+.+.++..+
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~-G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGT-GGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHH-HCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhcc-ccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            567788888888888854432211      1256677778888755 777899999999999865   567788899999


Q ss_pred             HHhHHhHHHHhhHh----hhhHHHHHHHHHHHHHHHHHH
Q 011514          153 LSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYM  187 (484)
Q Consensus       153 ~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~  187 (484)
                      .++|..+++.+.+.    .+|...|.+.++..++..+..
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            99999999877766    478999999886665554433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=97.20  E-value=0.035  Score=53.76  Aligned_cols=164  Identities=11%  Similarity=0.044  Sum_probs=108.2

Q ss_pred             hhhhhHHHHHHHHhhh-cCcChhhHHH-HHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhh
Q 011514          261 SEGGMQASFLYFLKAQ-FHFNKNQFAD-LMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (484)
                      -+-...+++..|+.+. .|++.+|... ++-...-...+.. +....+.|..+.|++++++.+...+...++.+.++...
T Consensus        18 ~frPsEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l-~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~   96 (412)
T PF01770_consen   18 EFRPSEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFL-LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLA   96 (412)
T ss_pred             hcCCCCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence            3445677888888886 7898888653 2222233333333 55578999999999999999988888888877776555


Q ss_pred             HHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHH
Q 011514          339 IKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGI  418 (484)
Q Consensus       339 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~  418 (484)
                                                            .-..-+..|...+. .....+++-..+|+++--++.+.....
T Consensus        97 --------------------------------------mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   97 --------------------------------------MQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             --------------------------------------HHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHH
Confidence                                                  13333345554443 556678888889999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          419 SSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       419 ~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      .-+|..++..++-.+.+.. +.+...     ...+......++.++.+++++
T Consensus       138 ~l~g~~~s~~lgQllvs~~-~~sy~~-----L~~isl~~~~~a~~~~~fLP~  183 (412)
T PF01770_consen  138 TLVGRFISSLLGQLLVSFG-GVSYFQ-----LNYISLASVSLALLIALFLPM  183 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CCCHHH-----HHHHHHHHHHHHHHHHHHcCC
Confidence            9999888888877666542 322211     223343444455555555544

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=97.00  E-value=0.0077  Score=43.96  Aligned_cols=77  Identities=14%  Similarity=0.136  Sum_probs=64.8

Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhh
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWV  338 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  338 (484)
                      .+-..+...+|...+|. ++|..+.|++-+...++..++. +...++.++.++++.+..+.+...+..+.+++.++.+.
T Consensus         6 igRFayTplLP~M~~~~-~ls~~~ag~lasaNy~GYL~GA-l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~   82 (85)
T PF06779_consen    6 IGRFAYTPLLPLMQADG-GLSLSQAGWLASANYLGYLVGA-LLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWL   82 (85)
T ss_pred             hHHHHHHhHhHHHHHhc-CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence            34456677788866665 9999999999999999999999 77788888888889999999999999999998877654

Note that many members are hypothetical proteins.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.99  E-value=0.088  Score=52.46  Aligned_cols=177  Identities=11%  Similarity=-0.054  Sum_probs=95.4

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCc-----ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF-----NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGL  320 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~  320 (484)
                      |.+....+..|+..+.+...     --++|....     +.+...++.+...+...+....+.+++++|++|+++.....
T Consensus         7 ~k~~~~~l~fF~il~~Y~iL-----R~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~   81 (472)
T TIGR00769         7 KKFLPLFLMFFCILFNYTIL-----RDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVI   81 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-----HhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHH
Confidence            34444555555544333322     225666555     33566777776666556653355699999999999877666


Q ss_pred             HHHHHHHHHHhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh-HHHH
Q 011514          321 FAACINMFICSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP-SFRS  397 (484)
Q Consensus       321 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~  397 (484)
                      ......+.++++.  +.....+ ++.......    ...+....|.+  ..+..|...+.  .+...+......+ ..++
T Consensus        82 ~~F~~~f~lF~~vl~p~~~~~~-p~~~~~~~~----~~~~~~~~~~i--~~~~~W~~~~F--Yv~~elw~~~vvS~lFW~  152 (472)
T TIGR00769        82 SPFLGFFALFAFVIYPLSDLLH-PTALADKLL----SLLPPGFMGFI--AILRIWSFALF--YVMAELWGSVVLSLLFWG  152 (472)
T ss_pred             HHHHHHHHHHHHHHhcchhhcC-CcHHHHHHH----hhcchhhHHHH--HHHhhhhHHHH--HHHHHHHHHHHHHHHHHH
Confidence            5555555544432  1110000 000000000    00000000000  01111111111  1122233333444 7788


Q ss_pred             HHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          398 IVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       398 ~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +++|...+++..|-+++.....++|..+++.+..++.+.
T Consensus       153 fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~  191 (472)
T TIGR00769       153 FANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKL  191 (472)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998887753

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=96.94  E-value=0.00016  Score=73.36  Aligned_cols=176  Identities=10%  Similarity=0.006  Sum_probs=2.8

Q ss_pred             chhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhH
Q 011514          260 LSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVI  339 (484)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (484)
                      ....++....-.-++++++++..+.|.+.+.+-++..+.. ++..+..+|..|-|.+-.+.++++++.+++.+.+-....
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~-~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~   94 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVV-LFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP   94 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence            4444444444456788899999999999999999999998 555788888888888889999999998887754321100


Q ss_pred             -----HH---hhhhHHHHHH---HHhhhhhh-hhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCc
Q 011514          340 -----KI---FFNKVFKLLL---LSFITRKQ-ISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNE  407 (484)
Q Consensus       340 -----~~---~~~~~~~~~~---~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  407 (484)
                           ..   ..........   ..--.+.. ...-.-.-+..+.....++...++.|+|....++...+++-|.+++++
T Consensus        95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~  174 (539)
T PF03137_consen   95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKN  174 (539)
T ss_dssp             ---------------------------------------------------------SSS--------------------
T ss_pred             CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeecccccccc
Confidence                 00   0000000000   00000000 000000001111112234566678899999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011514          408 QGKAQGCISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       408 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      .+...|+......+|-++|=.+++...+.
T Consensus       175 splYiGi~~~~~~lGPa~Gf~lg~~~L~~  203 (539)
T PF03137_consen  175 SPLYIGILYAMSILGPALGFLLGSFCLRI  203 (539)
T ss_dssp             -----------------------------
T ss_pred             CccchhhhhHHhhccHHHHHHHHHHHHhc
Confidence            99999999999999988888888877654

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=96.76  E-value=0.0024  Score=61.49  Aligned_cols=161  Identities=11%  Similarity=0.060  Sum_probs=109.5

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh----hcchHHH-HHhH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI----LGEAKLL-SLGL  320 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~g~~~~~-~~~~  320 (484)
                      +.+.......+...++...-.++.+.|+++. |.+....+.......+.+.+.++++ |..+||    +||||.. ..+.
T Consensus        32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~l-Gvphk~~S~iw~~gPi~G~~vQP~v-G~~SDrc~sr~GRRRPfI~~~s  109 (498)
T KOG0637|consen   32 RKLISVASIAAGVQFGWALELSYLTPYLQSL-GVPHKWSSIIWLCGPLSGLLVQPLV-GSASDRCTSRYGRRRPFILAGS  109 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccHHHHHc-CCCcccccccccccccccceecccc-cccccccccccccccchHHHhh
Confidence            3444555566666777777788899999886 9999998999888899999999555 999994    6776654 4555


Q ss_pred             HHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhh--hhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHH
Q 011514          321 FAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQ--ISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSI  398 (484)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  398 (484)
                      ....++++++++......              .+..+..  .-.+-+.         +.++...+.-+..........++
T Consensus       110 ~~i~~~l~Lig~aaDig~--------------~lgd~~~~~~~~rai~---------~~~lg~~LLD~A~n~~qgp~ra~  166 (498)
T KOG0637|consen  110 LLIAVSLFLIGYAADIGL--------------LLGDNERKPVKPRAIV---------LFILGFWLLDVANNTLQGPCRAL  166 (498)
T ss_pred             HHHHHHHhhhhhHhhhhH--------------HhcCCcccccchHHHH---------HHHHHhHHHHhhhhhhhhhHHHH
Confidence            667777777776554222              0001110  0000000         01333335556666777888999


Q ss_pred             HhcccCCCchhH-HHHHHHHHHHHHHHHHHHHHH
Q 011514          399 VSKQVGPNEQGK-AQGCISGISSFANIVSPLIFS  431 (484)
Q Consensus       399 ~~~~~p~~~~g~-~~g~~~~~~~lg~~~gp~i~g  431 (484)
                      ..|...++++.+ +.+.......+|+.+|=.+++
T Consensus       167 L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~  200 (498)
T KOG0637|consen  167 LADLARGDAKKTRANSVFSFFMAVGNVLGYALGS  200 (498)
T ss_pred             HHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence            999998887777 999999999999888766654

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.68  E-value=0.0078  Score=62.06  Aligned_cols=197  Identities=9%  Similarity=0.079  Sum_probs=132.7

Q ss_pred             hhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchh-----h
Q 011514          264 GMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAW-----V  338 (484)
Q Consensus       264 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  338 (484)
                      ++....-.-++++++++..+.|++.+.+-++..+.. ....+...|..|-+.+-+|.++++++.++..+.+-..     .
T Consensus       114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i-~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLI-IFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhh-HhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            555555556888899999999999999989888888 4447888888888888999999999988877542100     0


Q ss_pred             H-H-----HhhhhHHHHHHH----Hhh----------hhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHH
Q 011514          339 I-K-----IFFNKVFKLLLL----SFI----------TRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSI  398 (484)
Q Consensus       339 ~-~-----~~~~~~~~~~~~----~f~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  398 (484)
                      . .     ....+-..+...    .+.          ++.+...|++           ++...++.|+|....++...++
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-----------ff~~q~l~GIG~Tpi~tlGisY  261 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLL-----------FFLGQLLLGIGATPIFTLGISY  261 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHH-----------HHHHHHHhhcCCCCCccCCCcc
Confidence            0 0     000000000000    000          0001113333           2666778899999999999999


Q ss_pred             HhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-CC--------CcccCc---hHHHHHHHHHHHHHHHHH
Q 011514          399 VSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSK-GA--------PFNFPG---FSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       399 ~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~-~~--------~~~~~~---~~~~~~~~~~~~~~~~~~  466 (484)
                      +-|.+.+++.....|+..++..+|-++|=.+++.+.....+. ..        |- |.|   +.|++.+.+.++..+..+
T Consensus       262 iDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPr-WIGAWWlGFLi~g~~~~~~a~p~f  340 (735)
T KOG3626|consen  262 IDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPR-WIGAWWLGFLICGALLLFSAVPLF  340 (735)
T ss_pred             ccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcc-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887765443 11        11 111   245777777777777777


Q ss_pred             HhccCCC
Q 011514          467 MMSHTPA  473 (484)
Q Consensus       467 ~~~~~~~  473 (484)
                      +.+++.+
T Consensus       341 ~fPk~lp  347 (735)
T KOG3626|consen  341 FFPKELP  347 (735)
T ss_pred             hCcccCc
Confidence            7666543

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.073  Score=52.49  Aligned_cols=150  Identities=18%  Similarity=0.220  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc---cCchhHhH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ---YGRKAMLT   85 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr---~Grk~~l~   85 (484)
                      .+..+....+..++..+......|.-+.-....+.++    ....++..-...++..+++.+.+.+++|   +||++.+.
T Consensus       241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~----~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~  316 (461)
T KOG3098|consen  241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT----TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVL  316 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc----hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchh
Confidence            3444444555555555555555555443221112222    2233455555567777777778888764   78999999


Q ss_pred             HHHHHHHHHHHHHHhccch---------------hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHH
Q 011514           86 LPLTLSIIPLAILAYRRSI---------------SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILL  150 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~---------------~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~  150 (484)
                      ++..+..++.++.-.....               +.....++.-++.|+ +.+......+.++.+.. +++|..+.++..
T Consensus       317 ~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~-~D~~~~t~~~~ii~~~~-~~~~~~~fsi~k  394 (461)
T KOG3098|consen  317 IGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGF-GDACFNTQRYVIIALLY-PDDRAQAFSLFK  394 (461)
T ss_pred             HHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhh-HHHHHHHHHHHHHHHHh-cCchHHHHHHHH
Confidence            9988888887776653211               124567788899995 66888888899999999 688899999888


Q ss_pred             HHHHhHHhHHHHhh
Q 011514          151 GVLSASFVCGTLAA  164 (484)
Q Consensus       151 ~~~~~g~~ig~~l~  164 (484)
                      .-..++..++-...
T Consensus       395 fyq~~~s~v~~f~~  408 (461)
T KOG3098|consen  395 FYQSVASCVAFFFS  408 (461)
T ss_pred             HHHHHHHHHHhhhh
Confidence            88777766654433

>PRK03612 spermidine synthase; Provisional

Probab=96.30  E-value=0.44  Score=48.50  Aligned_cols=145  Identities=14%  Similarity=0.058  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH-
Q 011514           12 HLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL-   90 (484)
Q Consensus        12 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~-   90 (484)
                      .+....|+.+++.-.+--+..-+....+       +.+....+.+.+++..+..+++.+.|++.++--|+.. ..-..+ 
T Consensus        18 ~l~~~~f~sg~~~L~yEv~~~r~l~~~~-------G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~   89 (521)
T PRK03612         18 LLLAAVFVCAACGLVYELLLGTLASYLL-------GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLA   89 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh-------CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHH
Confidence            4444555555444333333333333332       3334455888999999999998888887644323322 111111 


Q ss_pred             --HHHHHHHHHhccch--hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514           91 --SIIPLAILAYRRSI--SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus        91 --~~i~~~~~~~~~~~--~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                        ..++..+......+  .....++...++.++.. |...|....+..+... ++-++..|.......+|.++|+++.++
T Consensus        90 l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~-G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~  167 (521)
T PRK03612         90 LLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLI-GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF  167 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence              11111111111110  00112233344455444 4556766665554332 234667788888888888888877765

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.14  Score=48.19  Aligned_cols=76  Identities=20%  Similarity=0.248  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      +....++.+.++...+.-+--.....++.++   +.+...+    ...-..+-....++.+++.|...|+..|+|++...
T Consensus        27 ~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L---~gnsl~l----vAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~   99 (503)
T KOG2601|consen   27 STVIFLYLGYFLTTWGDRMWEFSVSLFMILL---GGNSLLL----VAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW   99 (503)
T ss_pred             ceeehhhHHHHHhHhhHhHHHHHHHHHHHHH---cCceehh----HHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence            3445677888888888777666777777666   3333222    23333344555677888899999999999998876


Q ss_pred             HHH
Q 011514           88 LTL   90 (484)
Q Consensus        88 ~~~   90 (484)
                      +.+
T Consensus       100 L~l  102 (503)
T KOG2601|consen  100 LLL  102 (503)
T ss_pred             Hhh
Confidence            554

>PRK03612 spermidine synthase; Provisional

Probab=96.21  E-value=0.6  Score=47.57  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=84.7

Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  330 (484)
                      +.+..++..++...++..+.-.+...+|-+....+.+.+++-.+..+++ .+++++.++..+ +....-..+..++.+..
T Consensus        19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs-~l~~~~~~~~~~-~~~~~e~~i~l~~~~~~   96 (521)
T PRK03612         19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGA-LLSKYLLRDAAA-GFVAVELLLALLGGLSA   96 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH-HHHHhhhhhHHH-HHHHHHHHHHHHHHHHH
Confidence            3444455555666667777777777789888888888888888888887 555666533222 22111111111111100


Q ss_pred             h--hccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCch
Q 011514          331 S--ISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQ  408 (484)
Q Consensus       331 ~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~  408 (484)
                      .  .....+.    .  ...+.                          .....++.++..|+..|....+..+... ++.
T Consensus        97 ~ll~~~~~~~----~--~~~~~--------------------------~~~~~~~~~~l~G~~~Pl~~~~~~~~~~-~~~  143 (521)
T PRK03612         97 LILYAAFAFQ----G--LSRLL--------------------------LYVLVLLIGLLIGMEIPLLMRILQRIRD-QHL  143 (521)
T ss_pred             HHHHHHHHHH----H--HHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhccc-cch
Confidence            0  0000000    0  00000                          0222335567777778877666654322 345


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          409 GKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       409 g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      |+..|-....+.+|+++|+++.+++.-
T Consensus       144 g~~~g~ly~~ntlGa~~G~l~~~~vLl  170 (521)
T PRK03612        144 GHNVATVLAADYLGALVGGLAFPFLLL  170 (521)
T ss_pred             hhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence            677888889999999999999988765

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=96.01  E-value=0.21  Score=48.37  Aligned_cols=109  Identities=11%  Similarity=0.147  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHH--H---HHHHHHHHHhccchhhHHHHHHHHHHhhhhccch
Q 011514           50 IYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLT--L---SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGS  124 (484)
Q Consensus        50 ~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~--~---~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~  124 (484)
                      ..+.-+....|.+|..++.--...+  |+  |+..+.+.+  +   ..+....+-+.++   .|..++.-+..|+.+ |.
T Consensus       280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips---i~ivf~lif~eGLlG-Ga  351 (402)
T PF02487_consen  280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS---IWIVFVLIFYEGLLG-GA  351 (402)
T ss_pred             HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHhh-hH
Confidence            3466777888888877765432221  33  333333222  2   2222223334556   788888899999866 66


Q ss_pred             hhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh
Q 011514          125 INCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF  166 (484)
Q Consensus       125 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~  166 (484)
                      .+......+.|..|+++|..+++....+-++|..++.+++-.
T Consensus       352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~  393 (402)
T PF02487_consen  352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP  393 (402)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            677888899999999999999999999999999998887754

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=95.75  E-value=0.074  Score=51.85  Aligned_cols=86  Identities=9%  Similarity=-0.001  Sum_probs=65.9

Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHH
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPN---EQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCI  454 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~---~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~  454 (484)
                      .....++++|.|..=|...++..|.++++   +|.+.+.......++|..+++.+.+++.+.. ++..       .|.+.
T Consensus        37 ~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~-~~~~-------~f~i~  108 (372)
T PF00854_consen   37 YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNY-GWFL-------GFGIP  108 (372)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS--HHH-------HHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhcccc-chhh-------hhhHH
Confidence            45566889999999999999999999865   4667888889999999999999999998764 4443       56777


Q ss_pred             HHHHHHHHHHHHHhccC
Q 011514          455 GLASMVAFIQSLMMSHT  471 (484)
Q Consensus       455 ~~~~~~~~~~~~~~~~~  471 (484)
                      ++..+++.+..+.-++.
T Consensus       109 ~~~~~~~~~~f~~~~~~  125 (372)
T PF00854_consen  109 AIGMLLALIVFLSGRKR  125 (372)
T ss_dssp             HHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHhCCcC
Confidence            77777766655544433

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=95.42  E-value=0.45  Score=45.20  Aligned_cols=157  Identities=10%  Similarity=0.045  Sum_probs=78.2

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHH--HHHHHHHHHHHHHHhhhhhcchHHH-HHhHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIA--GLAGTISQLLFMPLLAPILGEAKLL-SLGLF  321 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~g~~~~~-~~~~~  321 (484)
                      ++.+..+...+.......+... .+|..++.. |.|-.+.+.+-..+  ...-.+-++++=..-.+|+||||.- .-+..
T Consensus        30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak-~vSyt~~a~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~  107 (510)
T KOG3574|consen   30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK-GVSYTSQAIFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQY  107 (510)
T ss_pred             hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC-CcchhhhhhhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHH
Confidence            3566666777777777666555 889988855 66665544432211  1112222222222333499998753 33444


Q ss_pred             HHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          322 AACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +....+..+....+.+..                .++..+..+.           ..+...+.-+..+.--.......-.
T Consensus       108 llG~~mllLs~~v~~~~g----------------~ng~~p~v~~-----------lt~~f~LLnflaAtQDIAVDgwALt  160 (510)
T KOG3574|consen  108 LLGLFMLLLSYLVDRGLG----------------GNGGLPNVVA-----------LTLLFLLLNFLAATQDIAVDGWALT  160 (510)
T ss_pred             HHHHHHHHHhhCCCcccc----------------cCCCCcchHH-----------HHHHHHHHHHHHhhhhhhhhHHHHH
Confidence            455555555544433330                0110000000           0112223333333334445556666


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIF  430 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~  430 (484)
                      +..+++.|-+.......+..|.+++..++
T Consensus       161 mLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  161 MLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             hcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            67777777766666666666666655443

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=95.09  E-value=0.9  Score=44.85  Aligned_cols=129  Identities=13%  Similarity=0.013  Sum_probs=86.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHH---hccc----hhhHHHHHHHHHHhhh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILA---YRRS----ISFFYAYYALRTLTAM  119 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~---~~~~----~~~~~~l~~~r~l~G~  119 (484)
                      +.+....|..-+...+..+.+.....++.+|+|..|.=..+......+..++.   +.+.    ......++.+-.+.=+
T Consensus       289 G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~  368 (432)
T PF06963_consen  289 GYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRI  368 (432)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHH
Confidence            56667789999999999999999999999999998877766665444333322   2222    1112333333333222


Q ss_pred             hccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHhhhhHHHHHHH
Q 011514          120 VCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLSTTSAFQAA  176 (484)
Q Consensus       120 ~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~l~~~~~f~~~  176 (484)
                      |-=+.- -+..-++.|..|+++||...|...+..++--++-..++-.+....-|...
T Consensus       369 GLW~fD-L~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~P~~F~~l  424 (432)
T PF06963_consen  369 GLWSFD-LAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPRPSQFGWL  424 (432)
T ss_pred             HHHhhh-HHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCChHhcChH
Confidence            221333 47888899999999999999999998888877776666554444444333

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=94.22  E-value=4.1  Score=36.83  Aligned_cols=50  Identities=0%  Similarity=-0.123  Sum_probs=29.3

Q ss_pred             cchhHHHHHHHHHHHhHHhHH--HHhhH-------hhhhHHHHHHHHHHHHHHHHHHHH
Q 011514          140 RQRASAFGILLGVLSASFVCG--TLAAR-------FLSTTSAFQAATIVSMLAAAYMRV  189 (484)
Q Consensus       140 ~~r~~~~~~~~~~~~~g~~ig--~~l~~-------~l~~~~~f~~~~~~~~i~~~~~~~  189 (484)
                      ++|+........++++|.++.  |.+-.       .-.|+..+.+.+++.++-+++...
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i   60 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII   60 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555556666667776554  33222       126888888888666665544433

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.67  E-value=0.86  Score=41.20  Aligned_cols=55  Identities=15%  Similarity=0.200  Sum_probs=37.8

Q ss_pred             HHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHH
Q 011514          271 YFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACIN  326 (484)
Q Consensus       271 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  326 (484)
                      +|+-+.+|+...++|.++...-...++.. .+.+-+.||.|||+.-..-.+...++
T Consensus        61 YyLYstYgFgkG~IgqLfiaGfgSsmLFG-tivgSLaDkqGRKracvtycitYiLs  115 (454)
T KOG4332|consen   61 YYLYSTYGFGKGDIGQLFIAGFGSSMLFG-TIVGSLADKQGRKRACVTYCITYILS  115 (454)
T ss_pred             eeeehhcCccCCccceeeecccchHHHHH-HHHHHHHhhhccccceeeehHHHHHH
Confidence            45666789999998887766555555555 55588999999998654444444333

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.63  E-value=3.4  Score=42.54  Aligned_cols=175  Identities=13%  Similarity=0.061  Sum_probs=105.5

Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHhHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLGLFAACINMFI  329 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~  329 (484)
                      .+....+...+..+....+-.|+.+.++.+..++.-.....+....... +.+++++|- .||-+.+.++.++...+..+
T Consensus        42 il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~-l~g~~laD~f~gry~tI~~~s~i~~~G~~~  120 (571)
T KOG1237|consen   42 ILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLP-LLGAFLADSFLGRYFTINIGSLISLLGLFG  120 (571)
T ss_pred             HHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            4444455556666666777788888888888777766666666666665 777999995 58888888888888777665


Q ss_pred             HhhccchhhHHHhhhhHHHHHHHHhhhh----hhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          330 CSISWSAWVIKIFFNKVFKLLLLSFITR----KQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +..........       +..+ .+-+.    ....-+...         .+.....+...|.+..-|...++-.|.+++
T Consensus       121 lt~~a~~~~l~-------p~~~-~~~~~~~~c~~~s~~q~~---------~~~~~l~lia~G~gg~r~~~~~fGadQfd~  183 (571)
T KOG1237|consen  121 LTLSAMIPALL-------PFMC-KFKPGGNVCESPSKLQLA---------VLYGALYLIALGAGGIRPCLLAFGADQFDE  183 (571)
T ss_pred             HHHHHHhhhcC-------Cccc-cCCCCCCcccCcchHHHH---------HHHHHHHHheeccCCCCCcchhhcccccCc
Confidence            54432211100       0000 00000    000000000         012233366678888889999999988882


Q ss_pred             ----Cchh--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Q 011514          406 ----NEQG--KAQGCISGISSFANIVSPLIFSPLTALFLSKGAPF  444 (484)
Q Consensus       406 ----~~~g--~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~  444 (484)
                          +.+.  +-+.......+.|..++-.+.-++.+.. +....+
T Consensus       184 ~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~-~w~lgf  227 (571)
T KOG1237|consen  184 LDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNV-GWKLGF  227 (571)
T ss_pred             cCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcc-cceeec
Confidence                2223  5677777788888888777776665553 544443

>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=91.28  E-value=0.13  Score=45.84  Aligned_cols=147  Identities=13%  Similarity=0.025  Sum_probs=77.5

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAAC  324 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  324 (484)
                      +-.+....+.+.+.-.-...-+.+++.|..+.++++.+..+.+-++..+.....+.+..-.--++.+.|.....|.+...
T Consensus       200 ~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~eipwngkrlKayYsaGgiiwi  279 (412)
T KOG4830|consen  200 HVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNSEIPWNGKRLKAYYSAGGIIWI  279 (412)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcccCCcCcceeeeeeecccHHHH
Confidence            34556666666666666667778889888888888777666665555555554442221111112222333344444443


Q ss_pred             HHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccC
Q 011514          325 INMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVG  404 (484)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p  404 (484)
                      .+...+.+.+..+..              +                      ......++|+..+.......++......
T Consensus       280 fcga~ilLlpr~i~s--------------y----------------------myAisvfIGIAnAimlvtslsitavli~  323 (412)
T KOG4830|consen  280 FCGAVILLLPRGIKS--------------Y----------------------MYAISVFIGIANAIMLVTSLSITAVLIN  323 (412)
T ss_pred             HhhhheeecccchHH--------------H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333333333333320              0                      0223335666666655555555555554


Q ss_pred             C--CchhHHHHHHHHHHHHHHHHHH
Q 011514          405 P--NEQGKAQGCISGISSFANIVSP  427 (484)
Q Consensus       405 ~--~~~g~~~g~~~~~~~lg~~~gp  427 (484)
                      +  +..+.+.|..+.+-.+.+.++-
T Consensus       324 ~~~~~~aFv~GamSF~DKlS~GiA~  348 (412)
T KOG4830|consen  324 KNTESGAFVYGAMSFFDKLSNGIAY  348 (412)
T ss_pred             cccCCceEEEehHHHHHhhcccHHH
Confidence            3  3345566777777776655543

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=90.95  E-value=14  Score=34.75  Aligned_cols=97  Identities=18%  Similarity=0.132  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCC--
Q 011514           61 GLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNIS--  138 (484)
Q Consensus        61 ~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~--  138 (484)
                      .+.-..++.+.+.+..++|-|..+.++...+.....    .+-..-+..++-.-...|++. +.....--+|+++...  
T Consensus        68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA----~Nl~pr~~tlVPa~~~~G~aa-~p~W~SkgtYlT~~g~~y  142 (390)
T KOG3097|consen   68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIA----ANLEPRYETLVPAGLVLGMAA-GPIWASKGTYLTPMGQNY  142 (390)
T ss_pred             hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhcchhHHhhccHHHhhcccc-ccccccCcceecHHHHHH
Confidence            344445555566888999999999887776654332    222233677888888999755 6655555566665543  


Q ss_pred             ccch---------hHHHHHHHHHHHhHHhHHHH
Q 011514          139 ERQR---------ASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus       139 ~~~r---------~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .++|         .+.++...+.+.-+..+|..
T Consensus       143 a~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~  175 (390)
T KOG3097|consen  143 ANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNL  175 (390)
T ss_pred             HHhhhhhccCceeeeehhHHHHHHHHHHHHHHH
Confidence            2233         34555555555555555433

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=90.61  E-value=13  Score=33.73  Aligned_cols=32  Identities=6%  Similarity=-0.037  Sum_probs=14.7

Q ss_pred             hhhhhHHHHHHHHhhhc----CcChhhHHHHHHHHH
Q 011514          261 SEGGMQASFLYFLKAQF----HFNKNQFADLMLIAG  292 (484)
Q Consensus       261 ~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~  292 (484)
                      ..++....=..|.++.-    +-+.....+.++-..
T Consensus       193 vlyGs~fvPv~Yi~~~~~~y~~as~~~ldYvFs~f~  228 (254)
T PF07857_consen  193 VLYGSNFVPVIYIQDHPDIYPGASQNGLDYVFSHFS  228 (254)
T ss_pred             HHHhcccchHHHHHhCccccCCCCCcchheeHHHHh
Confidence            33443433344666653    334444444544433

The region concerned is approximately 280 residues long.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=90.00  E-value=4.4  Score=40.34  Aligned_cols=111  Identities=11%  Similarity=0.108  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhcccccCch-hHhHHHHHHHHHHH---HHHHhcc------chhhHHHHHHHHHHhhhhc
Q 011514           52 LSGFQQAIIGLGTLVMMPVIGNLSDQYGRK-AMLTLPLTLSIIPL---AILAYRR------SISFFYAYYALRTLTAMVC  121 (484)
Q Consensus        52 ~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk-~~l~~~~~~~~i~~---~~~~~~~------~~~~~~~l~~~r~l~G~~~  121 (484)
                      ..-....+++++-.+|..+..+. ..-++| +.+.+..+...+..   ++|..-+      -...-+..++.-++.|+ .
T Consensus       308 ~~~i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gl-t  385 (437)
T TIGR00939       308 YPIICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGF-S  385 (437)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHH-h
Confidence            44577888999999988755432 111222 13333344333332   3332221      01114666777888996 4


Q ss_pred             cchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514          122 EGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus       122 ~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      .|.....+..+..+..++++|..+-.+...+..+|..+|..++
T Consensus       386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~  428 (437)
T TIGR00939       386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS  428 (437)
T ss_pred             hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4777778888899999999999999999999888888887665

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=89.84  E-value=0.12  Score=48.99  Aligned_cols=52  Identities=17%  Similarity=0.163  Sum_probs=3.6

Q ss_pred             hhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 011514          378 PYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLI  429 (484)
Q Consensus       378 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i  429 (484)
                      ++.+.++++..|........+..+.+++++|..+-.+....-..|-.+|..+
T Consensus       252 ~i~~~l~g~TNGyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  252 IILMLLFGFTNGYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             ---------------HHHH---------------------------------
T ss_pred             HHHHHHHHHccchhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456688999999999999999999998888887777777777666666554

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=85.89  E-value=42  Score=33.96  Aligned_cols=176  Identities=12%  Similarity=0.016  Sum_probs=89.7

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhc---CcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQF---HFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA  322 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~  322 (484)
                      +++..+.+..|+..+.+...-.     ++|.+   ..+++...++=....+-..+....+..++++++++.++..+....
T Consensus        24 ~k~~~l~~m~f~i~f~y~~lR~-----~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~   98 (491)
T PF03219_consen   24 KKFLPLALMFFFILFNYTILRD-----LKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIP   98 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----hcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            5566666666665544433222     23322   224555555544333333333335568999999999877655555


Q ss_pred             HHHHHHHHhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhh-hHHHHHH
Q 011514          323 ACINMFICSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFAT-PSFRSIV  399 (484)
Q Consensus       323 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~  399 (484)
                      ....+.++++.  +..... .++........  ..++  ..-|.  ...+++|...+.+...  -.-..... -..+.++
T Consensus        99 F~~fF~~f~~vlyP~~~~l-hp~~~~~~~~~--~~~~--~~~~~--i~~~~~Wt~slfYv~a--ElwgsvvlSlLFW~fA  169 (491)
T PF03219_consen   99 FLGFFALFAFVLYPNRDIL-HPDAFADKLLA--ILPP--GFKGF--IAMFRNWTFSLFYVMA--ELWGSVVLSLLFWGFA  169 (491)
T ss_pred             HHHHHHHHHHHHhhchhhc-CCCHHHHHhhh--hccc--hHHHH--HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            44444444331  110000 00000010000  0000  01111  1222333332222221  11112222 3468899


Q ss_pred             hcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          400 SKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       400 ~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      .|..+.++..+.+++.....++|.++++.+...+.+
T Consensus       170 N~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  170 NEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888887777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=84.10  E-value=4.9  Score=37.33  Aligned_cols=74  Identities=15%  Similarity=0.085  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhH
Q 011514           88 LTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAAR  165 (484)
Q Consensus        88 ~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~  165 (484)
                      .+++.+.-.+..+.++   .|..++.-+..|+.+ |..+....--+.+-.++++|..+++.....-++|..++..++-
T Consensus       326 Nl~ff~~~a~~~ftps---i~ivf~lI~~EGLlG-GasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lal  399 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPS---IWIVFALILFEGLLG-GASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLAL  399 (409)
T ss_pred             HHHHHHHHHHHHhccH---HHHHHHHHHHHhhcC-chHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhc
Confidence            3455555666777888   788888888999876 5555667777778788899999999999999999888777653

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=80.85  E-value=27  Score=31.37  Aligned_cols=23  Identities=17%  Similarity=0.078  Sum_probs=15.6

Q ss_pred             HHHhhhhhcchHHHHHhHHHHHH
Q 011514          303 MPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       303 ~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +..++.|+..|++.+++..++.+
T Consensus       260 Gk~lAskIS~rtVt~~ggi~Fi~  282 (294)
T KOG2881|consen  260 GKYLASKISVRTVTLIGGILFII  282 (294)
T ss_pred             hHHHhhhheeEEEEEecchhHHH
Confidence            35678888888877666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	484
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 50/280 (17%), Positives = 88/280 (31%), Gaps = 85/280 (30%)

Query: 109 AYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARFLS 168
               LR L  +  +   NCL L  V  N+   +  +AF            C     + L 
Sbjct: 230 IQAELRRL--LKSKPYENCL-L--VLLNVQNAKAWNAFN---------LSC-----KILL 270

Query: 169 TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-----VNQNESNSP 223
           TT   Q    +S  AA    + L     +     LT     +E +      ++    + P
Sbjct: 271 TTRFKQVTDFLS--AATTTHISL-----DHHSMTLT----PDEVKSLLLKYLDCRPQDLP 319

Query: 224 VKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQ 283
            +  V    P    +I           A        + +    A++  +     H N ++
Sbjct: 320 RE--VLTTNPRRLSII-----------AES------IRD--GLATWDNWK----HVNCDK 354

Query: 284 FADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLF--AACINMFICSISWSAW---V 338
                    L   I     + +L P         L +F  +A I   + S+ W       
Sbjct: 355 ---------LTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403

Query: 339 IKIFFNKVFKLLLLSFITRKQ-----ISVHVLLLKILKSI 373
           + +  NK+ K  L+     KQ     IS+  + L++   +
Sbjct: 404 VMVVVNKLHKYSLV----EKQPKESTISIPSIYLELKVKL 439

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 4e-05
 Identities = 59/384 (15%), Positives = 103/384 (26%), Gaps = 124/384 (32%)

Query: 135 DNI-SERQRASAFGILLGVLSASFVCGT-LAARFLSTTSAFQAATIVSMLAAAYMRVFLK 192
           D+I   +   S    L   L +       +  +F           +  +L   Y   FL 
Sbjct: 52  DHIIMSKDAVSGTLRLFWTLLSK---QEEMVQKF-----------VEEVLRINYK--FLM 95

Query: 193 DDVPNDDDD--DLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS------ 244
             +  +      +TR  I +     N N+  +   +   +    +R  +  LR       
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 245 --------SV----TLSQAAVVAFFSG----LSEGG---------MQASFLYFLKAQFHF 279
                   +           V          L+            M    LY +   +  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 280 NKNQFADLML-IAGLAGTISQLLFMP-----LLAPILGEAKLLSLGLFAACINMFICSIS 333
             +  +++ L I  +   + +LL        LL  +L                       
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNV-------------------- 253

Query: 334 WSAWVIKIFFNKVFKLLL----------LSFITRKQISV-HV-----------LLLKILK 371
            +A     F     K+LL          LS  T   IS+ H            LLLK L 
Sbjct: 254 QNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 372 SIFMQVPYATTAFSVLVV--FATPSFRSIVS-----KQVGPNEQGKAQGCISGISSFANI 424
                +P      +   +   A  S R  ++     K V  ++          I S  N+
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAE-SIRDGLATWDNWKHVNCDKLTTI------IESSLNV 365

Query: 425 VSPLIFSPL-TALFLSKGAPFNFP 447
           + P  +  +   L +       FP
Sbjct: 366 LEPAEYRKMFDRLSV-------FP 382

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 69/223 (30%)

Query: 186 YMRVFLKD-DVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRS 244
           +   F+ + D    D  D+ + I+++E       E +  +       +     L   L S
Sbjct: 25  FEDAFVDNFDC--KDVQDMPKSILSKE-------EIDHIIMSK--DAVSGTLRLFWTLLS 73

Query: 245 SVTLSQAAVVAFFSGLSEGGMQASFLY-FLKAQFHFNKNQFADLMLIAGLAGTISQL--- 300
                Q  +V  F    E  ++ +  Y FL +     + Q + +  +      I Q    
Sbjct: 74  ----KQEEMVQKF---VEEVLRIN--YKFLMSPIKTEQRQPSMMTRM-----YIEQRDRL 119

Query: 301 -----LFMPL----LAPILG-EAKLLSL---------GLFAACINMFICSISW------- 334
                +F       L P L     LL L         G       +     +W       
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-------VLGSGKTWVALDVCL 172

Query: 335 SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQV 377
           S  V      K+F      ++  K  +    +L++L+ +  Q+
Sbjct: 173 SYKVQCKMDFKIF------WLNLKNCNSPETVLEMLQKLLYQI 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 5e-04
 Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 31/144 (21%)

Query: 8   KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGL--DECSLAIYLSGFQQAIIGLGTL 65
           K L    +T         +     T +++      L  DE   ++ L         L   
Sbjct: 267 KIL----LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL--- 318

Query: 66  VMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSI 125
              P          R+ + T P  LSII    +    +    + +     LT ++ E S+
Sbjct: 319 ---P----------REVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTII-ESSL 363

Query: 126 NCLALAYVADNISERQRASAFGIL 149
           N L      +    R+      + 
Sbjct: 364 NVL------EPAEYRKMFDRLSVF 381

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	484
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.96
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.54
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.53
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.48
2xut_A	524	Proton/peptide symporter family protein; transport	99.46
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.4
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.37
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.17

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=2.9e-37  Score=307.95  Aligned_cols=388  Identities=12%  Similarity=0.079  Sum_probs=300.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHH
Q 011514            9 TLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPL   88 (484)
Q Consensus         9 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~   88 (484)
                      .+..+++..++..++.....+.+|.+.+++         .+..+.|++.+++.++..++++++|+++||+|||+++..+.
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~   99 (451)
T 1pw4_A           29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQG---------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGL   99 (451)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHTTSST---------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHH
Confidence            445566677777777788888888776432         33345699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh----ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           89 TLSIIPLAILAY----RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        89 ~~~~i~~~~~~~----~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      ++.+++.+++++    +++   ++.++++|+++|++. +...+...+++.|++|+++|++++++.+...++|.++||.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  175 (451)
T 1pw4_A          100 ILAAAVMLFMGFVPWATSS---IAVMFVLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF  175 (451)
T ss_dssp             HHHHHHHHHHHHCHHHHSS---SSHHHHHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHHHh-hhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999    888   788899999999765 777789999999999999999999999999999999999988


Q ss_pred             Hh----hh-hHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH-
Q 011514          165 RF----LS-TTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL-  238 (484)
Q Consensus       165 ~~----l~-~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (484)
                      +.    .+ ||++|++.+++.++..++.++.+||++++.+.+++++....       ..++. .   +.+++..+.++. 
T Consensus       176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~---~~~~~~~~~~~~~  244 (451)
T 1pw4_A          176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-------YPDDY-N---EKAEQELTAKQIF  244 (451)
T ss_dssp             HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------CCTHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhccc-------ccccc-h---hhhhcccccccch
Confidence            76    46 99999999988888877777888987765433211110000       00000 0   000111122222 


Q ss_pred             HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh--cchHHH
Q 011514          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPIL--GEAKLL  316 (484)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~~~~~  316 (484)
                      .+...++|.++...+..++..........+.|.|+++.+|+++.+.+...+..+++..++. ++.+++.||+  ++|+.+
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~g~l~~~~~~~~~~~~  323 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGAT  323 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCchhH
Confidence            3446778889988888888888888899999999999889999999999999999999998 7779999999  999888


Q ss_pred             HHhHHHHH-HHHHHHhhccc--hhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhh
Q 011514          317 SLGLFAAC-INMFICSISWS--AWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATP  393 (484)
Q Consensus       317 ~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  393 (484)
                      ..+..+.. ++++.+.+.++  .+.                                      ......+.|++.+...+
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~g~~~~~~~~  365 (451)
T 1pw4_A          324 GVFFMTLVTIATIVYWMNPAGNPTV--------------------------------------DMICMIVIGFLIYGPVM  365 (451)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTCHHH--------------------------------------HHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCHHH--------------------------------------HHHHHHHHHHHHhchHH
Confidence            77776665 66666655532  222                                      13444567777778888


Q ss_pred             HHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHH
Q 011514          394 SFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLM  467 (484)
Q Consensus       394 ~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  467 (484)
                      ...++..|.+|+++||++.|+.+...++ |..++|.+.|.+.+.. ++..       .|.+.+++.+++.+....
T Consensus       366 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          366 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF-GWDG-------GFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS-CSHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcHH-------HHHHHHHHHHHHHHHHHH
Confidence            8889999999999999999999999999 9999999999999975 4433       445555555555544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=5.2e-36  Score=297.79  Aligned_cols=353  Identities=13%  Similarity=0.088  Sum_probs=289.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHH
Q 011514            8 KTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLP   87 (484)
Q Consensus         8 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~   87 (484)
                      +.+..++...++..+..+...+.+|.+.+++        +.+..+.|++.+.+.++..++++++|+++||+|||++++.+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~   97 (438)
T 3o7q_A           26 IPFALLCSLFFLWAVANNLNDILLPQFQQAF--------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITG   97 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHH
Confidence            3455566677788888889999999988776        34445679999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH---HhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhh
Q 011514           88 LTLSIIPLAIL---AYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAA  164 (484)
Q Consensus        88 ~~~~~i~~~~~---~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~  164 (484)
                      .++.+++.+++   .++++   ++.+++.|++.|++. +...+...++++|++|+|+|++++++.+...++|..+||.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~---~~~l~~~~~l~G~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~  173 (438)
T 3o7q_A           98 LFLYALGAALFWPAAEIMN---YTLFLVGLFIIAAGL-GCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_dssp             HHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccc---HHHHHHHHHHHHhhH-HHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999   88899   899999999999765 777789999999999999999999999999999999999998


Q ss_pred             Hhhh------------------------------hHHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCCCCCCCccccccc
Q 011514          165 RFLS------------------------------TTSAFQAATIVSMLAAAYMRV-FLKDDVPNDDDDDLTRPIITEETE  213 (484)
Q Consensus       165 ~~l~------------------------------~~~~f~~~~~~~~i~~~~~~~-~lpe~~~~~~~~~~~~~~~~~~~~  213 (484)
                      +.+.                              ||++|++.+.+..+..+..++ ..||++++++++            
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~------------  241 (438)
T 3o7q_A          174 QSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD------------  241 (438)
T ss_dssp             THHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC------------
T ss_pred             HHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc------------
Confidence            7754                              999998877666655554433 123332211110            


Q ss_pred             ccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHH-HhhhcCcChhhHHHHHHHHH
Q 011514          214 GVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYF-LKAQFHFNKNQFADLMLIAG  292 (484)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~  292 (484)
                                      ++.++.++..+.+.++|.++...+..++..........+.|.| +++.+|+++.+.+...+...
T Consensus       242 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          242 ----------------AKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             ----------------SSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             ----------------ccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence                            0112333445557788999999888888888888888999999 88888999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhh
Q 011514          293 LAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKS  372 (484)
Q Consensus       293 ~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  372 (484)
                      ++..++. ++.+++.||+++|+.+..+..+..++++.+.+.++.+.                                  
T Consensus       306 ~~~~~~~-~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  350 (438)
T 3o7q_A          306 VCFFIGR-FTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVG----------------------------------  350 (438)
T ss_dssp             HHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHH----------------------------------
T ss_pred             HHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHH----------------------------------
Confidence            9999998 77799999999999999999888888887777665544                                  


Q ss_pred             hccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 011514          373 IFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       373 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                           .+...+.+++.+...|...++..|..|++ ++++.++.. ...++..++|.+.|.+.|..+++..
T Consensus       351 -----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~  413 (438)
T 3o7q_A          351 -----LIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPT  413 (438)
T ss_dssp             -----HHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGG
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHH
Confidence                 34445778888888999999999999965 888888877 7789999999999999999732555

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=2.7e-34  Score=289.81  Aligned_cols=415  Identities=13%  Similarity=0.081  Sum_probs=269.3

Q ss_pred             HHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHH
Q 011514           15 VTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIP   94 (484)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~   94 (484)
                      ++.++.+++.+.+.+.+|.+..++..+...+.+.+..+.|++.+.+.+|.+++++++|+++||+|||+++.++.++..++
T Consensus        19 lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~   98 (491)
T 4gc0_A           19 LGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFIS   98 (491)
T ss_dssp             HHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            34566777778888888888777633333444666778899999999999999999999999999999999999999999


Q ss_pred             HHHHHh------------------ccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhH
Q 011514           95 LAILAY------------------RRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSAS  156 (484)
Q Consensus        95 ~~~~~~------------------~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  156 (484)
                      .+++++                  +++   ++.++++|+++|++. |...+....+++|+.|+++|++..+..+.....|
T Consensus        99 ~i~~a~~~~~~~~~~~~~~~~~~~a~~---~~~l~~~R~l~G~g~-G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g  174 (491)
T 4gc0_A           99 GVGSAWPELGFTSINPDNTVPVYLAGY---VPEFVIYRIIGGIGV-GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFG  174 (491)
T ss_dssp             HHHHHCTTTTTSCSSSSSSCCGGGGGC---HHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhcchhHHHHHHhhh---HHHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhh
Confidence            999984                  667   899999999999866 7777899999999999999999999999999999


Q ss_pred             HhHHHHhhHhh------------hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCc
Q 011514          157 FVCGTLAARFL------------STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV  224 (484)
Q Consensus       157 ~~ig~~l~~~l------------~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (484)
                      .++++.++...            .||..+....+..++ .+...+++||+|++...+++.++.....++...+.+..+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~  253 (491)
T 4gc0_A          175 QLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAV  253 (491)
T ss_dssp             HHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhcchhhccccccccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHH
Confidence            99988777542            477777776644444 44455679999876443332222221111100000000000


Q ss_pred             cCcccCCCCchHH-HHHHhhccchhHHHHHHHHHHhc-hhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHH
Q 011514          225 KIPVCKKIPSIRD-LICLLRSSVTLSQAAVVAFFSGL-SEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF  302 (484)
Q Consensus       225 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  302 (484)
                      .+..+...+..+. ......+.++.........+..+ .......+.+.+. +..+.+...........++...++. ++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~  331 (491)
T 4gc0_A          254 QEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF-KTLGASTDIALLQTIIVGVINLTFT-VL  331 (491)
T ss_dssp             HHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSSCCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH-HhcCCCccchhhHHHHHHHHHHHHH-HH
Confidence            0000000000000 01112233333333333333333 3334444444444 4457777776666677777777777 77


Q ss_pred             HHHhhhhhcchHHHHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHH
Q 011514          303 MPLLAPILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATT  382 (484)
Q Consensus       303 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (484)
                      .+++.||+|||+.+..+.....++++.+........                    ....              ......
T Consensus       332 ~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~--------------------~~~~--------------~~~~~~  377 (491)
T 4gc0_A          332 AIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA--------------------PGIV--------------ALLSML  377 (491)
T ss_dssp             HHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------CHHH--------------HHHHHH
T ss_pred             HHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc--------------------chHH--------------HHHHHH
Confidence            799999999999998888887777666543321111                    0000              011111


Q ss_pred             H-HHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHH
Q 011514          383 A-FSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVA  461 (484)
Q Consensus       383 ~-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  461 (484)
                      + .........|..+.+.+|.+|++.|+++.|+.+..+++++.+++.+.+.+.+..... .. ...+..|++.+++.+++
T Consensus       378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~-~~-~~~~~~~~i~~~~~~~~  455 (491)
T 4gc0_A          378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV-AH-FHNGFSYWIYGCMGVLA  455 (491)
T ss_dssp             HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH-HH-HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-hhhhHHHHHHHHHHHHH
Confidence            2 222223345677889999999999999999999999999999999888776542110 00 01122556666666666


Q ss_pred             HHHHHHhccCC
Q 011514          462 FIQSLMMSHTP  472 (484)
Q Consensus       462 ~~~~~~~~~~~  472 (484)
                      .++.++.-+|+
T Consensus       456 ~i~~~~~~PET  466 (491)
T 4gc0_A          456 ALFMWKFVPET  466 (491)
T ss_dssp             HHHHHHHCCCC
T ss_pred             HHHHHheecCC
Confidence            66655444443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=5.1e-32  Score=273.18  Aligned_cols=405  Identities=14%  Similarity=0.026  Sum_probs=280.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc-cCchhHhH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQ-YGRKAMLT   85 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr-~Grk~~l~   85 (484)
                      +|.++.++...+...++.....+.++.+.++..  ..+|.+.+..+.|++.+.+.++..+++++.|+++|| +|||+++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~   89 (491)
T 4aps_A           12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLI--STGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVF   89 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence            456777788888888888888888888887641  123346677788999999999999999999999999 89999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccc--hhHHHHHHHHHHHhHHhHHHHh
Q 011514           86 LPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQ--RASAFGILLGVLSASFVCGTLA  163 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~g~~ig~~l  163 (484)
                      .+.++.+++.++++++++   ++.+++.|+++|++. +...+...++++|++|+++  |+.++++.+...++|..+||.+
T Consensus        90 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~  165 (491)
T 4aps_A           90 WGGVLIMLGHIVLALPFG---ASALFGSIILIIIGT-GFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI  165 (491)
T ss_dssp             HHHHHHHHHHHHHHSCCS---TTHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHH-HhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence            999999999999999999   788899999999765 7777899999999999988  7778888999999999999998


Q ss_pred             hHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccc-------------------cCCCCC
Q 011514          164 ARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEG-------------------VNQNES  220 (484)
Q Consensus       164 ~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~  220 (484)
                      ++.    .+||++|++.++..++..+...+..|+..+++.++.+.+.......+.                   ..+..+
T Consensus       166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~  245 (491)
T 4aps_A          166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNS  245 (491)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence            876    489999999887766665555544444332221111110000000000                   000000


Q ss_pred             CCCccCc---------------ccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHH
Q 011514          221 NSPVKIP---------------VCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFA  285 (484)
Q Consensus       221 ~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  285 (484)
                      .++....               ..++. ...  .+..++....+...+..++...........+|.|.++..+.+..+.+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (491)
T 4aps_A          246 LPAYINLLTIVAIAIPVFYFAWMISSV-KVT--STEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS  322 (491)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG
T ss_pred             cccchhhhhHHHHHHHHHHHHHHhhcc-ccc--HHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH
Confidence            0000000               00000 000  00011222344455555666666667778899999988888867778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhcchHHHH-----HhHHHHHHHHHHHhhcc---------chhhHHHhhhhHHHHHH
Q 011514          286 DLMLIAGLAGTISQLLFMPLLAPILGEAKLLS-----LGLFAACINMFICSISW---------SAWVIKIFFNKVFKLLL  351 (484)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~-----~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~  351 (484)
                      ......++...++. .+.+++.||++||+...     .+..+.++++.++....         +.+.             
T Consensus       323 ~~~~~~~~~~~~~~-~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  388 (491)
T 4aps_A          323 WFQSLNPLFIMLYT-PFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLW-------------  388 (491)
T ss_dssp             GGTTHHHHHHHHHH-HHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHH-------------
T ss_pred             HHhccchHHHHHHH-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHH-------------
Confidence            88888888888887 66699999999876543     56666666655554422         1111             


Q ss_pred             HHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 011514          352 LSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSFANIVSPLIFS  431 (484)
Q Consensus       352 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g  431 (484)
                                               ......+.+++.+...+...++..|..|++.||++.|+.+...++|..++|.+.+
T Consensus       389 -------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~  443 (491)
T 4aps_A          389 -------------------------LVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVT  443 (491)
T ss_dssp             -------------------------HHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGG
T ss_pred             -------------------------HHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     1444557788888888999999999999999999999999999999999999998


Q ss_pred             HHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHh
Q 011514          432 PLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMM  468 (484)
Q Consensus       432 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  468 (484)
                      .+.+.  ++..       .|...+++.+++.+..+..
T Consensus       444 ~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~  471 (491)
T 4aps_A          444 LYNAK--SEVA-------YFSYFGLGSVVLGIVLVFL  471 (491)
T ss_dssp             GGGGS--STTH-------HHHHTHHHHHHHHHHHHHC
T ss_pred             HHhcc--cHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            88764  3332       3444444444444444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=2e-33  Score=273.36  Aligned_cols=342  Identities=13%  Similarity=0.077  Sum_probs=272.9

Q ss_pred             HHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHH
Q 011514           11 SHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTL   90 (484)
Q Consensus        11 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~   90 (484)
                      ..++...++..++.+...|.+|.+.+++        +.+..+.|++.+.+.++..++++++|+++||+|||+++..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   74 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDL--------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSI   74 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTS--------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence            4567778888889999999999887554        45556779999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----
Q 011514           91 SIIPLAILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF----  166 (484)
Q Consensus        91 ~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----  166 (484)
                      .+++.++..++++   ++.+++.|++.|++. +...+...+++.|+.|+|+|+++++..+...++|..+||.+++.    
T Consensus        75 ~~~~~~~~~~~~~---~~~l~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~  150 (375)
T 2gfp_A           75 FMLATLVAVTTSS---LTVLIAASAMQGMGT-GVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM  150 (375)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHhcc---HHHHHHHHHHHHHHH-HhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            9999999999998   899999999999755 77778999999999999999999999999999999999999887    


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccc
Q 011514          167 LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSV  246 (484)
Q Consensus       167 l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (484)
                      .+||+.|++.+++..+..+...+.+||++++++++                           ++..++.++    ..++|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~----~~~~~  199 (375)
T 2gfp_A          151 WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR---------------------------TRLLTSYKT----LFGNS  199 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC---------------------------CCTTTCSTH----HHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCccc---------------------------ccHHHHHHH----HhcCc
Confidence            38999999988777776665556677765432221                           001122333    45567


Q ss_pred             hhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHH-HHH
Q 011514          247 TLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFA-ACI  325 (484)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~-~~~  325 (484)
                      .++...+..++..........+.|.|+++.+|+++.+.+...+...++..++. .+.+++.||.+++  ...+... ...
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~-~~~~~l~~r~~~~--~~~~~~~~~~~  276 (375)
T 2gfp_A          200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGA-WFAGRPNKRFSTL--MWQSVICCLLA  276 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHH-HHHHTTTTHHHHH--HHHHHHHHHHT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            88888888888888888888899999999889999999999999999988888 6779999998872  2222222 111


Q ss_pred             HHHH--Hhhc--cchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          326 NMFI--CSIS--WSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       326 ~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +...  ....  ++.+.                                      ......+.+++.+...+...++..|
T Consensus       277 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~  318 (375)
T 2gfp_A          277 GLLMWIPDWFGVMNVWT--------------------------------------LLVPAALFFFGAGMLFPLATSGAME  318 (375)
T ss_dssp             SSSSSHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHTSSTTHHHHHT
T ss_pred             HHHHHHHhhhccccHHH--------------------------------------HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            1111  1110  01111                                      1344557778888889999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALF  437 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~  437 (484)
                      ..| ++||++.|+.+...++|..++|.+.|.+.+..
T Consensus       319 ~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~  353 (375)
T 2gfp_A          319 PFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTG  353 (375)
T ss_dssp             HHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHH
T ss_pred             hCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            998 89999999999999999999999999998764

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=1.6e-30  Score=256.40  Aligned_cols=384  Identities=15%  Similarity=0.109  Sum_probs=248.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHH
Q 011514            7 IKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTL   86 (484)
Q Consensus         7 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~   86 (484)
                      +|+++.+....++...+.+...|.+|.+.++.+  |.     +..+.|++.+.+.++..++++++|+++||+|||++++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--g~-----s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~   78 (417)
T 2cfq_A            6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN--HI-----SKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLW   78 (417)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTT--CC-----CTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            456677777778888888889999999987643  33     33345999999999999999999999999999999998


Q ss_pred             HHHHHHHHH---HHHHhccchhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCc--cchhHHHHHHHHHHHhHHhHHH
Q 011514           87 PLTLSIIPL---AILAYRRSISFFYAYYALRTLTAMVCEGSINCLALAYVADNISE--RQRASAFGILLGVLSASFVCGT  161 (484)
Q Consensus        87 ~~~~~~i~~---~~~~~~~~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~g~~ig~  161 (484)
                      +..+.++..   ....+.+..  .......+.+.|+.. +...+.....+.++.++  ++|+...+..+...++|..++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~  155 (417)
T 2cfq_A           79 IITGMLVMFAPFFIFIFGPLL--QYNILVGSIVGGIYL-GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGA  155 (417)
T ss_dssp             HHHHTTSCHHHHHHHTHHHHH--HTTCCHHHHGGGSST-THHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHH
Confidence            887765532   211222210  011234556655433 33333344444444433  4566677888778888999999


Q ss_pred             HhhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHH
Q 011514          162 LAARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDL  238 (484)
Q Consensus       162 ~l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (484)
                      .+++.+   +||.+|++.++..++..+. .+..||+++++.+++              +.+++       +++..+.++ 
T Consensus       156 ~l~~~l~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~~~~~-------~~~~~~~~~-  212 (417)
T 2cfq_A          156 SIVGIMFTINNQFVFWLGSGCALILAVL-LFFAKTDAPSSATVA--------------NAVGA-------NHSAFSLKL-  212 (417)
T ss_dssp             HHHHHHHHHCSHHHHTTTTTTTTTHHHH-SCSSCCCCSCSSCSS--------------SSSSS-------CCCCCCHHH-
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHcCcccccccccc--------------ccccc-------ccccccHHH-
Confidence            888764   6899998776554333333 233333221111000              00000       000112222 


Q ss_pred             HHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCc---ChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHH
Q 011514          239 ICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHF---NKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKL  315 (484)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~  315 (484)
                      .+...++|.++...+..+........+..++|.|+++.++.   +....+...+...+...++. +..+++.||+|||+.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~~~~  291 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNA  291 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHH
T ss_pred             HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcHHHH
Confidence            22345567777666555555545555566788888776542   34455777777777777777 777999999999999


Q ss_pred             HHHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHH
Q 011514          316 LSLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSF  395 (484)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  395 (484)
                      +..+..+.+++.+.+.+.++.+.                                      +.....+.+++.+...+..
T Consensus       292 l~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~~~~~~~~~~~~  333 (417)
T 2cfq_A          292 LLLAGTIMSVRIIGSSFATSALE--------------------------------------VVILKTLHMFEVPFLLVGC  333 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSHHH--------------------------------------HHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHH--------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence            88888888777766666554443                                      1222334455555555667


Q ss_pred             HHHHhcccCCCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHHHhcc
Q 011514          396 RSIVSKQVGPNEQGKAQGCI-SGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSLMMSH  470 (484)
Q Consensus       396 ~~~~~~~~p~~~~g~~~g~~-~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (484)
                      ..+..|..|++.||++.+.. +..+.+|+.++|.+.|.+.+.. ++..       .|.+.+++.+++.+..+...+
T Consensus       334 ~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~-g~~~-------~f~~~~~~~l~~~~~~~~~~~  401 (417)
T 2cfq_A          334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG-------AYLVLGLVALGFTLISVFTLS  401 (417)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHS-HHHH-------HHHHHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhc-CcHH-------HHHHHHHHHHHHHHHHHhhhc
Confidence            78999999999999999984 8888999999999999999865 3332       456666666665555444333

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.96  E-value=1.9e-27  Score=241.66  Aligned_cols=386  Identities=10%  Similarity=0.026  Sum_probs=237.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhccccc-CchhHh
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQY-GRKAML   84 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~-Grk~~l   84 (484)
                      +++.++.+++..++..++.....+.++.+.++.++++ ++.+.+..+.|++.+.+.++..++.++.|+++||+ |||+++
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~   88 (524)
T 2xut_A           10 WPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLS-IPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTI   88 (524)
T ss_dssp             ---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC-CSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            3556677888888888888888889998887654211 01124555679999999999999999999999999 999999


Q ss_pred             HHHHHHHHHHHHHHHhcc-chhhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHH---HHHHHHhHHhHH
Q 011514           85 TLPLTLSIIPLAILAYRR-SISFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI---LLGVLSASFVCG  160 (484)
Q Consensus        85 ~~~~~~~~i~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~g~~ig  160 (484)
                      ..+.++.+++.+++++++ +   ++.+++.|++.|++. +...+...+++.|++|+++|+++.+.   .+...++|..+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g  164 (524)
T 2xut_A           89 LWLSLIYCVGHAFLAIFEHS---VQGFYTGLFLIALGS-GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFA  164 (524)
T ss_dssp             HHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHHHH-HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhc-cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 8   888999999999765 66778999999999999999876666   889999999999


Q ss_pred             HHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCc------------
Q 011514          161 TLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPV------------  224 (484)
Q Consensus       161 ~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  224 (484)
                      |.+++.    .+||++|++.+++.++..+...+..|+.++.++++++..+..+.......+...+.+.            
T Consensus       165 ~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (524)
T 2xut_A          165 SLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIGLVLALIGGVS  244 (524)
T ss_dssp             HHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccchhhhhhhhhh
Confidence            988875    3799999998877665554443322322211111100000000000000000000000            


Q ss_pred             -------cCc---------------ccCCCCchHHHH--------HHhhccchhHHHH---HHHHHHhchhhhhHHHHHH
Q 011514          225 -------KIP---------------VCKKIPSIRDLI--------CLLRSSVTLSQAA---VVAFFSGLSEGGMQASFLY  271 (484)
Q Consensus       225 -------~~~---------------~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~  271 (484)
                             ...               +.+..+++++..        +...++++.....   ....+...........++.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  324 (524)
T 2xut_A          245 AAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWIL  324 (524)
T ss_dssp             HHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHH
T ss_pred             hhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHH
Confidence                   000               000000000000        0001112222111   1111222222223334444


Q ss_pred             HHhhhcCcCh-hhHHHHHHHHHHHHHHHHHHHHHHhh----hhhcc----hHHHHHhHHHHHHHHHHHhhcc--------
Q 011514          272 FLKAQFHFNK-NQFADLMLIAGLAGTISQLLFMPLLA----PILGE----AKLLSLGLFAACINMFICSISW--------  334 (484)
Q Consensus       272 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~g~----~~~~~~~~~~~~~~~~~~~~~~--------  334 (484)
                      +..+. +.+. ...+.+.....+...+.. .+.+++.    ||.++    ++.+..+..+.+++++.+.+..        
T Consensus       325 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  402 (524)
T 2xut_A          325 QANDM-VKPQWFEPAMMQALNPLLVMLLI-PFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSA  402 (524)
T ss_dssp             HHHHS-CCCSSSCHHHHHTTSGGGHHHHG-GGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCC
T ss_pred             hHHhc-CCCeeecHHHHHHHHHHHHHHhH-HHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            44332 3221 133555444444444444 2324432    33332    3456667777777776665532        


Q ss_pred             -chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHH
Q 011514          335 -SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQG  413 (484)
Q Consensus       335 -~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  413 (484)
                       +.+.                                      +.....+.+++.+...+...++..|..|+++||+++|
T Consensus       403 ~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g  444 (524)
T 2xut_A          403 LSIFW--------------------------------------QILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMS  444 (524)
T ss_dssp             CCSHH--------------------------------------HHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHH
T ss_pred             cCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHH
Confidence             1111                                      1444557788888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 011514          414 CISGISSFANIVSPLIFSPLTAL  436 (484)
Q Consensus       414 ~~~~~~~lg~~~gp~i~g~l~~~  436 (484)
                      +.+...++|+.++|.+.|.+.+.
T Consensus       445 ~~~~~~~~g~~~g~~~~g~~~~~  467 (524)
T 2xut_A          445 FWTLSVTVGNLWVLLANVSVKSP  467 (524)
T ss_dssp             HHGGGHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999998874

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.54  E-value=5.4e-13  Score=132.20  Aligned_cols=176  Identities=14%  Similarity=0.093  Sum_probs=139.6

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHH
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACI  325 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~  325 (484)
                      +.+....+..+.............|.+.++.  .+..+.+++.+...++..+++ +..|+++||+|||+.+..+..+.++
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~g~r~~l~~~~~~~~~  104 (451)
T 1pw4_A           28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAA  104 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHH-HhHHHHHHhcCchHHHHHHHHHHHH
Confidence            4455556666666666666777788777664  899999999999999999998 6679999999999999999999999


Q ss_pred             HHHHHhh----ccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhc
Q 011514          326 NMFICSI----SWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSK  401 (484)
Q Consensus       326 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  401 (484)
                      +.++.++    .++.+.                                      +....++.|++.+...+...+++.|
T Consensus       105 ~~~~~~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~i~~  146 (451)
T 1pw4_A          105 VMLFMGFVPWATSSIAV--------------------------------------MFVLLFLCGWFQGMGWPPCGRTMVH  146 (451)
T ss_dssp             HHHHHHHCHHHHSSSSH--------------------------------------HHHHHHHHHHHHHHTHHHHHHHHHT
T ss_pred             HHHHHHhhhhccccHHH--------------------------------------HHHHHHHHHHHhhhccchHHHHHHH
Confidence            9998888    666555                                      2444558899999999999999999


Q ss_pred             ccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCCcccCchHHHHHHHHHHHHHHHH-HHhcc
Q 011514          402 QVGPNEQGKAQGCISGISSFANIVSPLIFSPLTALFLS-KGAPFNFPGFSIMCIGLASMVAFIQS-LMMSH  470 (484)
Q Consensus       402 ~~p~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  470 (484)
                      .+|+++|+++.|+.+....+|..++|.+++.+.+.. + ++..+       .+.+++.++..+.. +..++
T Consensus       147 ~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~w~~~f-------~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          147 WWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF-NDWHAAL-------YMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             TCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT-CCSTTCT-------HHHHHHHHHHHHHHHHHCCC
T ss_pred             HCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHH-------HHHHHHHHHHHHHHHhhccC
Confidence            999999999999999999999999999999988876 5 55543       55544444433333 33443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.53  E-value=5e-13  Score=134.15  Aligned_cols=174  Identities=13%  Similarity=0.169  Sum_probs=144.4

Q ss_pred             chhHHHHHHHHHHhchhhhhHHHHHHHHhhh-----cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhh-hcchHHHHHh
Q 011514          246 VTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ-----FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPI-LGEAKLLSLG  319 (484)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~g~~~~~~~~  319 (484)
                      +.++......++..+.......+++.|+++.     +|.+..+.+++.+...++..+++ +..|+++|| +|||+.+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~g~l~dr~~g~r~~~~~~   91 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSG-TIGGFVADRIIGARPAVFWG   91 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccchHHHHHH
Confidence            4566677777788888888888999999988     89999999999999999999999 777999999 8999999999


Q ss_pred             HHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHH
Q 011514          320 LFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIV  399 (484)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  399 (484)
                      ..+..++.++..+.++.+.                                      +....++.|++.+...+...+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~~~~  133 (491)
T 4aps_A           92 GVLIMLGHIVLALPFGASA--------------------------------------LFGSIILIIIGTGFLKPNVSTLV  133 (491)
T ss_dssp             HHHHHHHHHHHHSCCSTTH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHH--------------------------------------HHHHHHHHHHHHHhccchHHHHH
Confidence            9999999999888877766                                      24445588899999999999999


Q ss_pred             hcccCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          400 SKQVGPNE--QGKAQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       400 ~~~~p~~~--~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      .|.+|+++  |+++.+..+...++|..++|.+.+.+.+.. +++.       .|.+.++..+++.+...
T Consensus       134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA-GYHV-------AFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh-hHHH-------HHHHHHHHHHHHHHHHH
Confidence            99999988  778888899999999999999999999865 4443       34555544444444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.48  E-value=1.9e-12  Score=127.75  Aligned_cols=147  Identities=10%  Similarity=-0.013  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHH
Q 011514          249 SQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMF  328 (484)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~  328 (484)
                      ....+..+...+.........|. +++.+|.+..+.+++.+...++..++. +..|++.||+|||+.+..+..+.+++.+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~-~~~G~l~dr~g~r~~l~~~~~~~~~~~~  106 (438)
T 3o7q_A           29 ALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIP-IPAGILMKKLSYKAGIITGLFLYALGAA  106 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTH-HHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHH-HhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33444445555555556666666 455579999999999999999999999 6679999999999999999999999988


Q ss_pred             HH---hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCC
Q 011514          329 IC---SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGP  405 (484)
Q Consensus       329 ~~---~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~  405 (484)
                      +.   ...++.+.                                      +....++.|++.+...+...+++.|..|+
T Consensus       107 ~~~~~~~~~~~~~--------------------------------------l~~~~~l~G~~~~~~~~~~~~~~~~~~~~  148 (438)
T 3o7q_A          107 LFWPAAEIMNYTL--------------------------------------FLVGLFIIAAGLGCLETAANPFVTVLGPE  148 (438)
T ss_dssp             HHHHHHHTTCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             HHHhccccccHHH--------------------------------------HHHHHHHHHhhHHHhhhhHHHHHHHHcCc
Confidence            88   66666666                                      24445588999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011514          406 NEQGKAQGCISGISSFANIVSPLIFSPLTA  435 (484)
Q Consensus       406 ~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  435 (484)
                      ++|+++.++.+....+|..++|.+++.+.+
T Consensus       149 ~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  178 (438)
T 3o7q_A          149 SSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999983

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.46  E-value=1.4e-12  Score=132.09  Aligned_cols=175  Identities=14%  Similarity=0.044  Sum_probs=141.4

Q ss_pred             cchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcC------cChhhHHHHHHHHHHHHHHHHHHHHHHhhhhh-cchHHHH
Q 011514          245 SVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFH------FNKNQFADLMLIAGLAGTISQLLFMPLLAPIL-GEAKLLS  317 (484)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-g~~~~~~  317 (484)
                      +|.++...+..++..+..+....+++.|+++.+|      +++.+.+++.+...++..++. +..|+++||+ |||+.+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~-~~~G~l~dr~~g~r~~~~   89 (524)
T 2xut_A           11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFP-LLGGWIADRFFGKYNTIL   89 (524)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTH-HHHHHHHTTSSCSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHH
Confidence            3566677778888888888888999999998889      999999999999999999998 7779999999 9999999


Q ss_pred             HhHHHHHHHHHHHhhcc-chhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          318 LGLFAACINMFICSISW-SAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       318 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      .+..+.+++.++..+.+ +.+.                                      +.....+.|++.+...+...
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~  131 (524)
T 2xut_A           90 WLSLIYCVGHAFLAIFEHSVQG--------------------------------------FYTGLFLIALGSGGIKPLVS  131 (524)
T ss_dssp             HHHHHHHHHHHHHHHTSSCHHH--------------------------------------HHHHHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccHHH--------------------------------------HHHHHHHHHHhccccchhHH
Confidence            99999999888888877 6555                                      24445578899999999999


Q ss_pred             HHHhcccCCCchhHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHHH
Q 011514          397 SIVSKQVGPNEQGKAQGC---ISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQSL  466 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~---~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (484)
                      +++.|.+|+++|++..+.   .+...++|..++|.+.+.+.+.. +++.       .|.+.+++.+++.+...
T Consensus       132 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~-g~~~-------~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          132 SFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF-GAAV-------AFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS-CHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHH-------HHHHHHHHHHHHHHHHH
Confidence            999999999999876665   89999999999999999998754 4333       44555555555444443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.40  E-value=7.9e-12  Score=122.65  Aligned_cols=164  Identities=12%  Similarity=0.079  Sum_probs=123.8

Q ss_pred             HhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch
Q 011514           25 MMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI  104 (484)
Q Consensus        25 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~  104 (484)
                      ......+|.+..+.+    ++.+.+....|+..++..++..++.++.|+++||+|||+.+..+.++.+++.++.++.++ 
T Consensus       237 ~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~-  311 (417)
T 2cfq_A          237 DVFDQQFANFFTSFF----ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS-  311 (417)
T ss_dssp             HHHHHHHHHHHHHTS----SSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS-
T ss_pred             HHHHHHHHHHHHHHH----hccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence            333344677765542    112334456688888888899999999999999999999999998888888888887777 


Q ss_pred             hhHHHHHHHHHHhhhhccchhhHhhhHHHhhcCCccchhHHHHH-HHHHHHhHHhHHHHhhHhh----hhHHHHHHHHHH
Q 011514          105 SFFYAYYALRTLTAMVCEGSINCLALAYVADNISERQRASAFGI-LLGVLSASFVCGTLAARFL----STTSAFQAATIV  179 (484)
Q Consensus       105 ~~~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~g~~ig~~l~~~l----~~~~~f~~~~~~  179 (484)
                        .+.+++..++.+++. +...+....+++|..|++.|+++.+. .+....+|..+||.+++.+    +++..|.+.+++
T Consensus       312 --~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~  388 (417)
T 2cfq_A          312 --ALEVVILKTLHMFEV-PFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLV  388 (417)
T ss_dssp             --HHHHHHHTTHHHHHH-HHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHH
Confidence              666677777777543 44455678899999999999999998 4788889999999888763    677788888877


Q ss_pred             HHHHHHHHHHHcccCCC
Q 011514          180 SMLAAAYMRVFLKDDVP  196 (484)
Q Consensus       180 ~~i~~~~~~~~lpe~~~  196 (484)
                      .++..+..++..||+++
T Consensus       389 ~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          389 ALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHhhhcCCCc
Confidence            77776666555665443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.37  E-value=1.5e-12  Score=125.73  Aligned_cols=165  Identities=11%  Similarity=0.076  Sum_probs=132.2

Q ss_pred             HHHHHHHHhchhhhhHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHH
Q 011514          251 AAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFIC  330 (484)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~  330 (484)
                      ..+..++...........+|.+.++ +|.++.+.++..+...++..+++ +..|+++||+|||+.+..+..+..++.+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~-~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A            5 LVLLVAVGQMAQTIYIPAIADMARD-LNVREGAVQSVMGAYLLTYGVSQ-LFYGPISDRVGRRPVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT-SSSTTHHHHHHHHHHHHHHHHHH-TTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHH-cCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence            4455566666666677777776554 69999999999999999999998 667999999999999999999999988888


Q ss_pred             hhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhH
Q 011514          331 SISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGK  410 (484)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~  410 (484)
                      .+.++.+.                                      +.....+.|++.+...+...+++.|..|+++|++
T Consensus        83 ~~~~~~~~--------------------------------------l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  124 (375)
T 2gfp_A           83 VTTSSLTV--------------------------------------LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH  124 (375)
T ss_dssp             HHHHHHHH--------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred             HHhccHHH--------------------------------------HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence            77766555                                      2444557888889899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHH
Q 011514          411 AQGCISGISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFI  463 (484)
Q Consensus       411 ~~g~~~~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (484)
                      +.+..+....+|..++|.+.+.+.+.. +++.       .+.+.++..++..+
T Consensus       125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~~-------~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          125 ANSLLNMGILVSPLLAPLIGGLLDTMW-NWRA-------CYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCHH-HHHH-------HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhc-cHHH-------HHHHHHHHHHHHHH
Confidence            999999999999999999999998765 4333       34555444444333

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.17  E-value=6e-10  Score=111.58  Aligned_cols=143  Identities=15%  Similarity=0.109  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhcc---chhhHHHHHHHHHHhhhhccchhhHhhh
Q 011514           54 GFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRR---SISFFYAYYALRTLTAMVCEGSINCLAL  130 (484)
Q Consensus        54 g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~r~l~G~~~~g~~~~~~~  130 (484)
                      ........+...++.++.+.+.||+|||+.++.+.....++.+..+...   ..+........-+..+ .. ....|...
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~  392 (491)
T 4gc0_A          315 LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAA-FA-MSWGPVCW  392 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-HH-TTTTHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH-HH-hHHHHHHH
Confidence            4555666778888899999999999999999998888887776655431   1111112222222222 22 33446778


Q ss_pred             HHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh----------hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCC
Q 011514          131 AYVADNISERQRASAFGILLGVLSASFVCGTLAARF----------LSTTSAFQAATIVSMLAAAYMRVFLKDDVPND  198 (484)
Q Consensus       131 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~----------l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~  198 (484)
                      .+.+|.+|.+.|+++.++......++..+++.+...          .++..+|++.+.++++..++.++++||++.+.
T Consensus       393 ~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t  470 (491)
T 4gc0_A          393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT  470 (491)
T ss_dssp             HHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred             HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence            999999999999999999999999988887765432          23456788888888888888999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	484
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	0.004

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 46/346 (13%), Positives = 110/346 (31%), Gaps = 12/346 (3%)

Query: 4   EKEIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLG 63
            +   T   L   +FL  F        +     +A+ P L E   +    GF  + I + 
Sbjct: 13  AEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSRGDLGFALSGISIA 71

Query: 64  TLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG 123
                 ++G++SD+   +  L   L L+   +  + +    +   A   +        +G
Sbjct: 72  YGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQG 131

Query: 124 SINCLALAYVADNISERQRASAFGILLGVLS-ASFVCGTLAARFLSTTSAFQAATIVSML 182
                    +    S+++R     +     +    +   L    ++  + + AA  +   
Sbjct: 132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191

Query: 183 AAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLL 242
            A  + +F    + +        PI   + +  +     +       +++ + +  +  +
Sbjct: 192 CAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAE------QELTAKQIFMQYV 245

Query: 243 RSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLF 302
             +  L   A+   F  L   G+      +LK   HF  ++ +    +   AG    LL 
Sbjct: 246 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLC 305

Query: 303 MPLL----APILGEAKLLSLGLFAACINMFICSISWSAWVIKIFFN 344
             +         G   +  + L      ++  + + +  V  I   
Sbjct: 306 GWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMI 351

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	484
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.45
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.33

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-35  Score=287.70  Aligned_cols=344  Identities=13%  Similarity=0.066  Sum_probs=257.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHhhhhccchh
Q 011514           47 SLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSI-SFFYAYYALRTLTAMVCEGSI  125 (484)
Q Consensus        47 ~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~-~~~~~l~~~r~l~G~~~~g~~  125 (484)
                      +.+..+.|++.+++.++..++++++|+++||+|||+++..+.++.+++.++++++++. ..++.+++.|++.|++. +..
T Consensus        55 g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~  133 (447)
T d1pw4a_          55 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQ-GMG  133 (447)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHH-HHT
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhh-hhh
Confidence            4555567999999999999999999999999999999999999999999998887531 11678899999999765 667


Q ss_pred             hHhhhHHHhhcCCccchhHHHHHHHHHHHhHHhHHHHhhHh-----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCC
Q 011514          126 NCLALAYVADNISERQRASAFGILLGVLSASFVCGTLAARF-----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPNDDD  200 (484)
Q Consensus       126 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~ig~~l~~~-----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~  200 (484)
                      .+...++++|++|+++|++++++.+....+|..++|.+++.     .+||+.|++.+.+..+..++.++.++|+|++...
T Consensus       134 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (447)
T d1pw4a_         134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGL  213 (447)
T ss_dssp             HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCC
T ss_pred             hhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhccc
Confidence            78899999999999999999999999999999999987765     2789999999988888888888878887765443


Q ss_pred             CCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHHHHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhhcCcC
Q 011514          201 DDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLICLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQFHFN  280 (484)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  280 (484)
                      ..+++.          +.+..++..++.+++....+...+...++|.++......++..........+.|.|+++.++++
T Consensus       214 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (447)
T d1pw4a_         214 PPIEEY----------KNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFA  283 (447)
T ss_dssp             CSCTTT----------CCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCC
T ss_pred             chhhhh----------hhhcccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccc
Confidence            211100          0000000111111111222333455677888888888888888888888999999999999999


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHH---HHHHHHHhhccc--hhhHHHhhhhHHHHHHHHhh
Q 011514          281 KNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAA---CINMFICSISWS--AWVIKIFFNKVFKLLLLSFI  355 (484)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~  355 (484)
                      ..+.+.......+...++. ++.+++.||.++++.........   .++.........  .+.                 
T Consensus       284 ~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------  345 (447)
T d1pw4a_         284 LDKSSWAYFLYEYAGIPGT-LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV-----------------  345 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHH-----------------
T ss_pred             cchhhhhhhcchhhhhhhh-hhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHH-----------------
Confidence            9999999999999999998 77799999998765433333222   222222222221  222                 


Q ss_pred             hhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 011514          356 TRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISSF-ANIVSPLIFSPLT  434 (484)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~l-g~~~gp~i~g~l~  434 (484)
                                           ......+.+++.+...+....+..|.+|++.||++.|+.+...++ |..++|.+.|.+.
T Consensus       346 ---------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~  404 (447)
T d1pw4a_         346 ---------------------DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV  404 (447)
T ss_dssp             ---------------------HHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                 133444667777777888889999999999999999999998887 4567899999999


Q ss_pred             HhhhcCC
Q 011514          435 ALFLSKG  441 (484)
Q Consensus       435 ~~~~~~~  441 (484)
                      |.. ++.
T Consensus       405 ~~~-g~~  410 (447)
T d1pw4a_         405 DFF-GWD  410 (447)
T ss_dssp             HSS-CSH
T ss_pred             HHh-ChH
Confidence            986 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-29  Score=246.34  Aligned_cols=390  Identities=14%  Similarity=0.069  Sum_probs=268.4

Q ss_pred             hhhHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhH
Q 011514            6 EIKTLSHLFVTVFLWGFATMMVVPAITDVTMMALCPGLDECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLT   85 (484)
Q Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~   85 (484)
                      |+|+++.+....|+..++.+...|.+|.+++|..       +.+..+.|++.+++.++..++++++|+++||+||||+++
T Consensus         5 kn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~-------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~   77 (417)
T d1pv7a_           5 KNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDIN-------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLL   77 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHH
Confidence            4678899999999999999999999999887654       556678899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhh-HHHHHHHHHHhhhhccchhhHhhhHHHhhcCC--ccchhHHHHHHHHHHHhHHhHHHH
Q 011514           86 LPLTLSIIPLAILAYRRSISF-FYAYYALRTLTAMVCEGSINCLALAYVADNIS--ERQRASAFGILLGVLSASFVCGTL  162 (484)
Q Consensus        86 ~~~~~~~i~~~~~~~~~~~~~-~~~l~~~r~l~G~~~~g~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~g~~ig~~  162 (484)
                      .+..+..++..+..+..+... ....+..+.+.+... +...+.......+..+  ++++.+..+........+..++|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (417)
T d1pv7a_          78 WIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYL-GFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGAS  156 (417)
T ss_dssp             HHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTG-GGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcc-cccccchhhcccccccchhhhhHHHHHHHhhhhccccccccc
Confidence            999999999888888766321 122344555555433 3332333333333332  234556677778888888889998


Q ss_pred             hhHhh---hhHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCCCCCcccccccccCCCCCCCCccCcccCCCCchHHHH
Q 011514          163 AARFL---STTSAFQAATIVSMLAAAYMRVFLKDDVPNDDDDDLTRPIITEETEGVNQNESNSPVKIPVCKKIPSIRDLI  239 (484)
Q Consensus       163 l~~~l---~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (484)
                      +++.+   +|+..+........+..+...+..||+++.++++++                      ++..++.....+ .
T Consensus       157 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~-~  213 (417)
T d1pv7a_         157 IVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANA----------------------VGANHSAFSLKL-A  213 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSSHH----------------------HHSCCCCCCHHH-H
T ss_pred             cccccccccccccccchhhHHHHHHHHHHHHhcccccchhhhhh----------------------hhhhcccccccc-c
Confidence            88764   566677666666666666767767776655443310                      000011111111 2


Q ss_pred             HHhhccchhHHHHHHHHHHhchhhhhHHHHHHHHhhh---cCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHH
Q 011514          240 CLLRSSVTLSQAAVVAFFSGLSEGGMQASFLYFLKAQ---FHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLL  316 (484)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~  316 (484)
                      +...+++..+....................+.+....   .+.+....+.......++..++. ...+++.||.++++.+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~r~~~~~~~  292 (417)
T d1pv7a_         214 LELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM-FFAPLIINRIGGKNAL  292 (417)
T ss_dssp             HHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHCHHHHH
T ss_pred             ccccccccccchhhhhHHHHHHHHhhhccccccccccccccccchhhhcccccccccccccch-hhhhhhhcccccccch
Confidence            2233334444444433433333333333333333322   23445556667777777777777 6779999999999999


Q ss_pred             HHhHHHHHHHHHHHhhccchhhHHHhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHH
Q 011514          317 SLGLFAACINMFICSISWSAWVIKIFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFR  396 (484)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  396 (484)
                      ..+..+.+++.+.+.+.++.+.                                      ......+.+++.+...+...
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~l~g~~~~~~~~~~~  334 (417)
T d1pv7a_         293 LLAGTIMSVRIIGSSFATSALE--------------------------------------VVILKTLHMFEVPFLLVGCF  334 (417)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHH--------------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhccccccccch--------------------------------------hhHHHHHHHHHHHHHHHHHH
Confidence            9999999999988888887776                                      25555678888888999999


Q ss_pred             HHHhcccCCCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCcccCchHHHHHHHHHHHHHHHH-HHhccCCC
Q 011514          397 SIVSKQVGPNEQGKAQGCIS-GISSFANIVSPLIFSPLTALFLSKGAPFNFPGFSIMCIGLASMVAFIQS-LMMSHTPA  473 (484)
Q Consensus       397 ~~~~~~~p~~~~g~~~g~~~-~~~~lg~~~gp~i~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  473 (484)
                      ++++|.+|++.||++.|+.. ....+|..++|.+.|.+.|.. +++.       .+.+.+++.++..+.. +.++++.+
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-g~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~  405 (417)
T d1pv7a_         335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-GFQG-------AYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-CHHH-------HHHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHH-------HHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999854 567799999999999999987 5443       4455555555444444 44444443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=3.6e-12  Score=123.46  Aligned_cols=137  Identities=15%  Similarity=0.081  Sum_probs=113.6

Q ss_pred             hHHHHHHHHhhhcCcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHHhHHHHHHHHHHHhhccc----hhhHH
Q 011514          265 MQASFLYFLKAQFHFNKNQFADLMLIAGLAGTISQLLFMPLLAPILGEAKLLSLGLFAACINMFICSISWS----AWVIK  340 (484)
Q Consensus       265 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  340 (484)
                      +....| +++| +|+|..+.|++.+...++..+++ +..|+++||+|||+.+..+..+.+++.++.++...    .+.  
T Consensus        44 ~~~~~p-~~~~-~g~s~~~~g~~~s~~~~~~~~~~-~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  118 (447)
T d1pw4a_          44 FALAMP-YLVE-QGFSRGDLGFALSGISIAYGFSK-FIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAV--  118 (447)
T ss_dssp             HHHHHH-HTTS-STTCSSCHHHHHHHHHHHHHHHH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSH--
T ss_pred             HHHHHH-HHHH-hCcCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHH--
Confidence            333344 5565 59999999999999999999999 77799999999999999999999888888776542    222  


Q ss_pred             HhhhhHHHHHHHHhhhhhhhhHHHHHHHHHhhhccchhhHHHHHHHhhhhhhhHHHHHHhcccCCCchhHHHHHHHHHHH
Q 011514          341 IFFNKVFKLLLLSFITRKQISVHVLLLKILKSIFMQVPYATTAFSVLVVFATPSFRSIVSKQVGPNEQGKAQGCISGISS  420 (484)
Q Consensus       341 ~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  420 (484)
                                                          +.....+.+++.+...+...+++.|.+|+++|+++.|+.+....
T Consensus       119 ------------------------------------~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~  162 (447)
T d1pw4a_         119 ------------------------------------MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN  162 (447)
T ss_dssp             ------------------------------------HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             ------------------------------------HHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccc
Confidence                                                24444578888888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhcCCC
Q 011514          421 FANIVSPLIFSPLTALFLSKGA  442 (484)
Q Consensus       421 lg~~~gp~i~g~l~~~~~~~~~  442 (484)
                      +|..++|.+.+.+.+...+.+.
T Consensus       163 ~g~~i~~~~~~~~~~~~~~w~~  184 (447)
T d1pw4a_         163 VGGGIPPLLFLLGMAWFNDWHA  184 (447)
T ss_dssp             HHHTSHHHHHHHHHHHTCCSTT
T ss_pred             hhhhhhhhhhhhHhhhhhcccc
Confidence            9999999999988887544444

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=8.9e-12  Score=118.67  Aligned_cols=150  Identities=13%  Similarity=0.083  Sum_probs=128.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhhhcccccCchhHhHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhhccc
Q 011514           44 DECSLAIYLSGFQQAIIGLGTLVMMPVIGNLSDQYGRKAMLTLPLTLSIIPLAILAYRRSISFFYAYYALRTLTAMVCEG  123 (484)
Q Consensus        44 ~~~~~~~~~~g~~~s~~~l~~~~~~~~~G~l~Dr~Grk~~l~~~~~~~~i~~~~~~~~~~~~~~~~l~~~r~l~G~~~~g  123 (484)
                      .+.+.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.++..+.++   .+.+++..++.|++. +
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~-~  327 (417)
T d1pv7a_         252 ATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS---ALEVVILKTLHMFEV-P  327 (417)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHH-H
T ss_pred             cccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc---cchhhHHHHHHHHHH-H
Confidence            444666677888899999999999999999999999999999999999999999999999   788888889999755 6


Q ss_pred             hhhHhhhHHHhhcCCccchhHHHHHH-HHHHHhHHhHHHHhhHh----hhhHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 011514          124 SINCLALAYVADNISERQRASAFGIL-LGVLSASFVCGTLAARF----LSTTSAFQAATIVSMLAAAYMRVFLKDDVPN  197 (484)
Q Consensus       124 ~~~~~~~~~i~~~~~~~~r~~~~~~~-~~~~~~g~~ig~~l~~~----l~~~~~f~~~~~~~~i~~~~~~~~lpe~~~~  197 (484)
                      ...+...+++.|..|+++|++..+.. +....+|..++|.+++.    .|++..|++.+++.++..++..+.++++++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  406 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPL  406 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCT
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence            77788999999999999999999975 55677899999988776    4789999999888888877777777765544