Citrus Sinensis ID: 011516
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | 2.2.26 [Sep-21-2011] | |||||||
| Q6CGU8 | 486 | Probable transporter MCH1 | yes | no | 0.440 | 0.438 | 0.250 | 3e-05 |
| >sp|Q6CGU8|MCH1_YARLI Probable transporter MCH1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MCH1 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 38/251 (15%)
Query: 211 RIAQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTV 270
R A+ A AE + H G TL + WL + G
Sbjct: 234 RTAESMASELRKKAEASTDCNCDGPGHEGA--TLKEFFTDKTAWLFLLCFVFIGGPFEMF 291
Query: 271 IDNLGQMSQSLGYDN-------THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323
+N+G + ++ +N TH VS+ + ++ + R+ G+ SE + + RPV +
Sbjct: 292 QNNMGAILDTVTVENADSPSFSTH--VSLFATFSTVSRLVVGFSSEAM--ESHVSRPVLL 347
Query: 324 AVAQFVMAIGHIFLGMG----WPGAMY--VGTLLIGLGYGAHWAIVPAAASELFGLKKFG 377
+V V A H+ + G + A Y V T++ G YG+ + +VP ++++G+ G
Sbjct: 348 SVIALVAACIHLMVPSGIFTVFDNAKYFSVVTIVNGFSYGSSFTLVPTIVTKVWGIANLG 407
Query: 378 ALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCE 437
++ LA GSL + GL+ + +YD +E + G SM +V C
Sbjct: 408 TIWGSFILALAVGSLGY-GLLFAKVYDAASE---------VGVG----SMSQV-----CS 448
Query: 438 GSICYFLTSMI 448
G CY LT +I
Sbjct: 449 GVHCYGLTFVI 459
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Probable transporter. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| 255536871 | 589 | conserved hypothetical protein [Ricinus | 0.985 | 0.809 | 0.843 | 0.0 | |
| 225451469 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.808 | 0.816 | 0.0 | |
| 147853498 | 591 | hypothetical protein VITISV_016786 [Viti | 0.987 | 0.808 | 0.816 | 0.0 | |
| 225451471 | 591 | PREDICTED: uncharacterized protein LOC10 | 0.987 | 0.808 | 0.801 | 0.0 | |
| 356558702 | 587 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.802 | 0.732 | 0.0 | |
| 356570169 | 587 | PREDICTED: uncharacterized protein LOC10 | 0.973 | 0.802 | 0.739 | 0.0 | |
| 312282435 | 579 | unnamed protein product [Thellungiella h | 0.956 | 0.799 | 0.765 | 0.0 | |
| 297807437 | 579 | nodulin family protein [Arabidopsis lyra | 0.956 | 0.799 | 0.752 | 0.0 | |
| 413920529 | 484 | nodulin-like protein, mRNA [Zea mays] gi | 0.987 | 0.987 | 0.725 | 0.0 | |
| 18395988 | 584 | major facilitator protein [Arabidopsis t | 0.962 | 0.797 | 0.759 | 0.0 |
| >gi|255536871|ref|XP_002509502.1| conserved hypothetical protein [Ricinus communis] gi|223549401|gb|EEF50889.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/478 (84%), Positives = 437/478 (91%), Gaps = 1/478 (0%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+P+
Sbjct: 113 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+LIFMVAVGPAMVV+ LMFIIRPVGGHRQVRPSD +SFTF+YSVCLLLAAYLMGVML+
Sbjct: 173 HASLIFMVAVGPAMVVVTLMFIIRPVGGHRQVRPSDGTSFTFVYSVCLLLAAYLMGVMLL 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
EDLVDL+HT+II+FTV+LFVLL +PIVIPI LSFF E DPAEE LL + E E GKS Q
Sbjct: 233 EDLVDLSHTLIIVFTVVLFVLLLLPIVIPIWLSFFHEPRDPAEETLLPESEKQEAGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVILSEVEDEKPK+VDLLPASER+KRIAQLQ +LF AAAEGAVR+KRRRGPHRGEDF
Sbjct: 293 DGHEVILSEVEDEKPKEVDLLPASERKKRIAQLQTKLFQAAAEGAVRIKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIF SLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV
Sbjct: 353 TLMQALIKADFWLIFVSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSEIIVRDYAYPRP+AMAVAQFVMAIGH+F WPG MY+GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEIIVRDYAYPRPIAMAVAQFVMAIGHVFFAFDWPGTMYIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGS 422
VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q HH+ AGS
Sbjct: 473 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASRIYDREAERQAH-EHHMRTAGS 531
Query: 423 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
+F+ + DEPLKCEG++CYFLTSMIMSG CI+AVILS+ILVHRT VY++LYGKSR+
Sbjct: 532 LFSGLFGPDEPLKCEGAVCYFLTSMIMSGFCIIAVILSLILVHRTKIVYANLYGKSRT 589
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451469|ref|XP_002270737.1| PREDICTED: uncharacterized protein LOC100244537 [Vitis vinifera] gi|296082334|emb|CBI21339.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/479 (81%), Positives = 429/479 (89%), Gaps = 1/479 (0%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV
Sbjct: 173 HASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV L+HTV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SEVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHL-LNAG 421
VPAAASELFGLK FGALYNFLTLANPAGSLVFSG+IAS IYD EAEKQ HHHL N G
Sbjct: 473 VPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVG 532
Query: 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
SIF+ M +D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853498|emb|CAN82292.1| hypothetical protein VITISV_016786 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 777 bits (2006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/479 (81%), Positives = 429/479 (89%), Gaps = 1/479 (0%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCLLLAAYLMGVMLV
Sbjct: 173 HASLVFMVAVGPIMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLLLAAYLMGVMLV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV L+HTV+ IFT ILFVL+ PIVIP+ LSFF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVHLSHTVVTIFTAILFVLILAPIVIPVSLSFFSEPKAPEAEALLTEPQKDEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SEVEDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DATEVIFSEVEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGY NTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYHNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRD+AYPRPVAMA AQ +MA+GH+F MGWPGAM++GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDHAYPRPVAMAAAQVIMALGHLFFAMGWPGAMHIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHL-LNAG 421
VPAAASELFGLK FGALYNFLTLANPAGSLVFSG+IAS IYD EAEKQ HHHL N G
Sbjct: 473 VPAAASELFGLKNFGALYNFLTLANPAGSLVFSGVIASSIYDREAEKQAHHHHHLQQNVG 532
Query: 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
SIF+ M +D+P KCEGSIC+FLTSMIMSGLCI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSMDDPPKCEGSICFFLTSMIMSGLCIIAVVLSMVLVHRTKIVYANLYGKSRT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225451471|ref|XP_002270809.1| PREDICTED: uncharacterized protein LOC100266857 [Vitis vinifera] gi|296082332|emb|CBI21337.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/479 (80%), Positives = 427/479 (89%), Gaps = 1/479 (0%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
+CILIFVG NGETYFNT LVSCVQNFPKSRGPVVGILKGF+GL GAILTQ+YTMIH+PD
Sbjct: 113 ICILIFVGTNGETYFNTVDLVSCVQNFPKSRGPVVGILKGFSGLSGAILTQIYTMIHSPD 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
HA+L+FMVAVGP MVV ALMFI+RPVGGHRQVRP+D SFTFIY VCL+LAAYLMGVML+
Sbjct: 173 HASLVFMVAVGPTMVVFALMFIVRPVGGHRQVRPTDDLSFTFIYGVCLVLAAYLMGVMLL 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLVDL+HTV+ IFT ILFVL+ +PIVIP+ LSF E P EALL++P+ EPGKS Q
Sbjct: 233 QDLVDLSHTVVTIFTAILFVLVLVPIVIPVSLSFPSEPKAPELEALLTEPQKEEPGKSEQ 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
+ EVI SE+EDEKPK+VDLLPASER+KRIA LQA+LF AAAEGAVRVKRRRGP RGEDF
Sbjct: 293 DATEVIFSELEDEKPKEVDLLPASERQKRIAHLQAKLFQAAAEGAVRVKRRRGPRRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TL QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGR+
Sbjct: 353 TLMQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRI 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGYFSE+IVRDYAYPRPVAMAVAQ MA+GH+F MGWPG++Y+GTLLIGLGYGAHWAI
Sbjct: 413 GGGYFSEMIVRDYAYPRPVAMAVAQVTMALGHLFFAMGWPGSLYIGTLLIGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ-HQPHHHLLNAG 421
VPAAASELFGLK FGALYNF+ LANP GSLVFSG+IAS IYD EAEKQ H HH N G
Sbjct: 473 VPAAASELFGLKNFGALYNFINLANPTGSLVFSGVIASSIYDREAEKQAHHHHHQQQNMG 532
Query: 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
SIF+ M VD+P KCEGSIC+FLTSMIMSG+CI+AV+LSM+LVHRT VY++LYGKSR+
Sbjct: 533 SIFSGMLSVDDPPKCEGSICFFLTSMIMSGICIIAVVLSMVLVHRTKVVYANLYGKSRT 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558702|ref|XP_003547642.1| PREDICTED: uncharacterized protein LOC100818484 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/483 (73%), Positives = 412/483 (85%), Gaps = 12/483 (2%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC LIFVG NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+Y + H+P+
Sbjct: 113 MCALIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALFHSPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAVGP++V I LMFI+RPVGGH+QVRPSD FT IY VCLLLAAYL+GVM+V
Sbjct: 173 QASLIFMVAVGPSLVGIGLMFIVRPVGGHKQVRPSDGKCFTLIYGVCLLLAAYLLGVMVV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV+++ TVI IFT +L ++L +PIVIPI L+F E+ P EEALL P+N E GKS
Sbjct: 233 QDLVEVSETVISIFTGVLLLILLVPIVIPITLTFGPEQRHPEEEALLPPPQNKEAGKSQL 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
++DEVILSE+EDEKPK+VD+LPASER+KRIA LQ RL AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DSDEVILSELEDEKPKEVDMLPASERQKRIAHLQQRLLQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TLTQALIKADFWL+F S+++GSGSGLTVIDNLGQMSQSLG+DN HIFVSMISIWNFLGRV
Sbjct: 353 TLTQALIKADFWLLFISMIMGSGSGLTVIDNLGQMSQSLGFDNAHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGY SE++VRD+AYPRPVA+AV Q +M +GH+FLGMGWPG+MYVGTLL+GLGYGAHWAI
Sbjct: 413 GGGYISELVVRDHAYPRPVALAVFQLIMTLGHVFLGMGWPGSMYVGTLLVGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHH--HLLNA 420
VPA ASELFGL+ FGALYNF+T+ANPAG+LVFS LIAS IYD EAEKQH+ + +LNA
Sbjct: 473 VPATASELFGLRNFGALYNFITIANPAGTLVFSSLIASTIYDAEAEKQHRQNMILQVLNA 532
Query: 421 GSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
EPLKCEGS+C+FLTSMIM+GLC+V L M+LV RT VY++LYGK+ S
Sbjct: 533 ----------SEPLKCEGSVCFFLTSMIMAGLCVVGAGLCMVLVLRTRIVYANLYGKASS 582
Query: 481 SNL 483
S L
Sbjct: 583 SRL 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356570169|ref|XP_003553263.1| PREDICTED: uncharacterized protein LOC100796700 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/483 (73%), Positives = 411/483 (85%), Gaps = 12/483 (2%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC LIFVG NGETYFNT +LVSCVQNFPKSRGPVVGILKGFAGL GAILTQ+Y + HAP+
Sbjct: 113 MCALIFVGTNGETYFNTVSLVSCVQNFPKSRGPVVGILKGFAGLSGAILTQIYALFHAPN 172
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAVGP++V I LMFI+RPVGGH+QVRPSD FT IY VCLLLAAYL+GVM+V
Sbjct: 173 QASLIFMVAVGPSLVGIGLMFIVRPVGGHKQVRPSDGKCFTLIYGVCLLLAAYLLGVMVV 232
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQ 182
+DLV+++ TVI IFT +L ++L +PIVIPI LSF E+ P EALL P+N E GKS
Sbjct: 233 QDLVEVSETVISIFTGVLLLILLVPIVIPITLSFGPEQRHPEVEALLPPPQNKEAGKSQL 292
Query: 183 ETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGEDF 242
++DEVILSE+EDEKPK+VD+LPASER+KRIA LQ RL AAAEGAVRVKRRRGPHRGEDF
Sbjct: 293 DSDEVILSELEDEKPKEVDMLPASERQKRIAHLQQRLLQAAAEGAVRVKRRRGPHRGEDF 352
Query: 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRV 302
TLTQALIKADFWL+F S+++GSGSGLTVIDNLGQMSQSLGYDN HIFVSMISIWNFLGRV
Sbjct: 353 TLTQALIKADFWLLFISMIMGSGSGLTVIDNLGQMSQSLGYDNAHIFVSMISIWNFLGRV 412
Query: 303 GGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAI 362
GGGY SE++VRD+AYPRPVA+AV Q +M +GH+FLGMGWPG+MYVGTLL+GLGYGAHWAI
Sbjct: 413 GGGYISELVVRDHAYPRPVALAVFQLIMTLGHVFLGMGWPGSMYVGTLLVGLGYGAHWAI 472
Query: 363 VPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHL--LNA 420
VPA ASELFGL+ FGALYNF+T+ANPAG+LVFS LIAS IYD EAEKQH+ + L LNA
Sbjct: 473 VPATASELFGLRNFGALYNFITIANPAGTLVFSSLIASTIYDAEAEKQHRQNMMLRVLNA 532
Query: 421 GSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSRS 480
EPLKCEGS+C+FLTSMIM+GLC+V L M+LV RT VY++LYGK+ S
Sbjct: 533 ----------SEPLKCEGSVCFFLTSMIMAGLCVVGAGLCMVLVLRTRIVYANLYGKASS 582
Query: 481 SNL 483
S L
Sbjct: 583 SRL 585
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312282435|dbj|BAJ34083.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/481 (76%), Positives = 414/481 (86%), Gaps = 18/481 (3%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNT +LVS V NFPKSRGPVVGILKGFAGLGGAIL+Q+YT +H+PD
Sbjct: 114 MCILIFVGNNGETYFNTGSLVSGVHNFPKSRGPVVGILKGFAGLGGAILSQIYTTMHSPD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAVGPA+VV LMF IRPVGGHRQ+RP+D +SFTFIY VC+LLAAYLM VML+
Sbjct: 174 PASLIVMVAVGPAVVVAFLMFFIRPVGGHRQIRPTDGASFTFIYGVCILLAAYLMAVMLI 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
EDLV ++H +I +FT++LFV+L +PI++PI+ SFF E PA EE L+ K EN EPG
Sbjct: 234 EDLVVVSHNIITVFTIVLFVILVVPILVPIMTSFFTESNAPADTVEEPLVPKRENQEPG- 292
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
Q+T ++ILSEVEDEKPK++DLLPASER KRIA LQARL AAAEGAVRVKR RGPHRG
Sbjct: 293 --QQTPDLILSEVEDEKPKEMDLLPASERHKRIAHLQARLMQAAAEGAVRVKRHRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE+IVRDYAYPRPVAMAVAQ VM++GH+F GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELIVRDYAYPRPVAMAVAQLVMSVGHVFFAFGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLN 419
WAIVPA ASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASTIYDREAERQAHV------ 524
Query: 420 AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 479
S+F D+ L+CEG ICYFLTS+IMSG CI+A ILSMILV RT +VYSHLYGK+R
Sbjct: 525 --SVFDP----DDALRCEGYICYFLTSLIMSGFCIIACILSMILVRRTKSVYSHLYGKTR 578
Query: 480 S 480
+
Sbjct: 579 T 579
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297807437|ref|XP_002871602.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] gi|297317439|gb|EFH47861.1| nodulin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/481 (75%), Positives = 415/481 (86%), Gaps = 18/481 (3%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC+LIFVGNNGETYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ +
Sbjct: 114 MCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSN 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAV PA+VV+ LMF IRPVGGH+Q+RPSD +SFTFIY VCLLLAAYLM VML+
Sbjct: 174 PASLILMVAVTPAVVVVCLMFFIRPVGGHKQIRPSDGASFTFIYGVCLLLAAYLMAVMLI 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
+DLV ++H VI +FT++LFV+L +PI++PI+ SFF E +P EE L+ K E+ EPG
Sbjct: 234 QDLVVVSHNVITMFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPG- 292
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
+T ++ILSEVEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRVKRRRGPHRG
Sbjct: 293 --MQTPDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVKRRRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+ VSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE++VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLN 419
WAIVPA ASELFGLKKFGALYNFLTLANPAGSLVFSG+IAS IYD EAE+Q
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQAH------- 523
Query: 420 AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 479
GS+F D+ L+C GSIC+FLTS++MSG CI+A ILSMILV RT +VY+HLYGK+R
Sbjct: 524 -GSVFDP----DDALRCNGSICFFLTSLVMSGFCIIACILSMILVRRTKSVYTHLYGKTR 578
Query: 480 S 480
+
Sbjct: 579 T 579
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413920529|gb|AFW60461.1| nodulin-like protein, mRNA [Zea mays] gi|414869668|tpg|DAA48225.1| TPA: nodulin-like protein, mRNA [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/484 (72%), Positives = 409/484 (84%), Gaps = 6/484 (1%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIF+GNNGETYFNTAALVSCVQNFPKSRGP+VGILKGFAGL GAILTQ+Y ++H+PD
Sbjct: 1 MCILIFIGNNGETYFNTAALVSCVQNFPKSRGPIVGILKGFAGLSGAILTQIYAIVHSPD 60
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A LIFMVAVGP M+VIALMFI+RPVGGHRQVRPSD++SFTF+YSVCLLLAAYLMGVML+
Sbjct: 61 DAALIFMVAVGPTMIVIALMFIVRPVGGHRQVRPSDNTSFTFVYSVCLLLAAYLMGVMLL 120
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPAEEALLSKPENMEPG--KS 180
EDLVDL+ +V ++ T++L + L +PIVIP++LSFF + + LL P EP S
Sbjct: 121 EDLVDLSQSVTVLLTIVLIIFLLVPIVIPVLLSFFSDDDETLHALLLPSPRKEEPSASTS 180
Query: 181 NQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRGE 240
++E EVILSEVEDEKPKDVDLLPASER+KRIA+LQ RLF AAA+GAVRVKRR+GP RGE
Sbjct: 181 SEEQQEVILSEVEDEKPKDVDLLPASERQKRIAELQTRLFQAAADGAVRVKRRKGPRRGE 240
Query: 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLG 300
DFTL QALIKADFWL+F SLLLGSGSGLTVIDNLGQMSQSLGY+ THIFVSMISIWNFLG
Sbjct: 241 DFTLMQALIKADFWLLFLSLLLGSGSGLTVIDNLGQMSQSLGYEETHIFVSMISIWNFLG 300
Query: 301 RVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHW 360
R+GGGYFSEIIV+DYAYPR +A+ +AQ ++AIGH M WPG MYVGTLL+G+GYGAHW
Sbjct: 301 RIGGGYFSEIIVKDYAYPRAIALGIAQILIAIGHFNFAMAWPGTMYVGTLLVGVGYGAHW 360
Query: 361 AIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHH---- 416
AIVPAAASELFG+K FGALYNFLT+ANPAGSLVFSG+IAS IYD EA KQ Q H
Sbjct: 361 AIVPAAASELFGVKNFGALYNFLTVANPAGSLVFSGVIASGIYDAEAAKQAQQRHSTSKL 420
Query: 417 LLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 476
L +G + + + LKCEG+IC+FL+S+IM+G C+VA LS+ILV+RT VY+ LYG
Sbjct: 421 LATSGRVVSVVSEAAPALKCEGAICFFLSSLIMAGFCVVAFGLSLILVYRTKVVYAGLYG 480
Query: 477 KSRS 480
K R+
Sbjct: 481 KPRT 484
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18395988|ref|NP_566157.1| major facilitator protein [Arabidopsis thaliana] gi|6091732|gb|AAF03444.1|AC010797_20 unknown protein [Arabidopsis thaliana] gi|6513938|gb|AAF14842.1|AC011664_24 unknown protein [Arabidopsis thaliana] gi|22136036|gb|AAM91600.1| unknown protein [Arabidopsis thaliana] gi|23197760|gb|AAN15407.1| unknown protein [Arabidopsis thaliana] gi|332640216|gb|AEE73737.1| major facilitator protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 367/483 (75%), Positives = 411/483 (85%), Gaps = 17/483 (3%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D
Sbjct: 114 MCILIFVGNNGETYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAV P++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLV
Sbjct: 174 RASLIFMVAVAPSVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLV 233
Query: 123 EDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFFLERTDPA---EEALLSKPENMEPGK 179
ED +DL+H++II FTV+LF +L +PI IPI S F TDP EE LL + +PG+
Sbjct: 234 EDFIDLSHSIIIAFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQ 293
Query: 180 SN--QETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 237
S E+I SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPH
Sbjct: 294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353
Query: 238 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWN 297
RGEDFTLTQAL+KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH+FVSMISIWN
Sbjct: 354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR+GGGYFSE+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYG
Sbjct: 414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHL 417
AHWAIVPA ASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q Q
Sbjct: 474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQ----- 528
Query: 418 LNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGK 477
GS+F D+ L+C GSICYFLTS+IMSG C++A LSMILV RT VY++LYGK
Sbjct: 529 ---GSLFNP----DDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYGK 581
Query: 478 SRS 480
+R+
Sbjct: 582 TRN 584
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| TAIR|locus:2078643 | 584 | AT3G01930 [Arabidopsis thalian | 0.962 | 0.797 | 0.710 | 6.5e-177 | |
| TAIR|locus:2174683 | 579 | AT5G14120 [Arabidopsis thalian | 0.956 | 0.799 | 0.700 | 1.6e-175 | |
| TAIR|locus:2159752 | 540 | AT5G50520 [Arabidopsis thalian | 0.475 | 0.425 | 0.528 | 2.3e-99 | |
| TAIR|locus:2832385 | 540 | AT5G50630 [Arabidopsis thalian | 0.475 | 0.425 | 0.528 | 2.3e-99 | |
| TAIR|locus:2059829 | 546 | AT2G16660 [Arabidopsis thalian | 0.411 | 0.364 | 0.41 | 6.5e-68 | |
| TAIR|locus:2056103 | 601 | AT2G39210 "AT2G39210" [Arabido | 0.489 | 0.394 | 0.373 | 2.9e-66 | |
| TAIR|locus:2116855 | 567 | AT4G34950 [Arabidopsis thalian | 0.376 | 0.320 | 0.406 | 2.4e-64 | |
| TAIR|locus:2046238 | 577 | AT2G28120 [Arabidopsis thalian | 0.485 | 0.407 | 0.364 | 5.4e-63 | |
| TAIR|locus:2198938 | 561 | AT1G80530 "AT1G80530" [Arabido | 0.384 | 0.331 | 0.428 | 1.9e-62 | |
| TAIR|locus:2027284 | 533 | AT1G74780 [Arabidopsis thalian | 0.347 | 0.315 | 0.394 | 1.6e-61 |
| TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1718 (609.8 bits), Expect = 6.5e-177, P = 6.5e-177
Identities = 343/483 (71%), Positives = 382/483 (79%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MCILIFVGNNGETYFNTAALVS VQNFPKSRGPVVGILKGFAGLGGAIL+QVYTMIH+ D
Sbjct: 114 MCILIFVGNNGETYFNTAALVSGVQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSD 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LIFMVAV P++VV+ LMF IRPVGGHRQ+R SD++SFT IY+VC+LLAAYLM VMLV
Sbjct: 174 RASLIFMVAVAPSVVVVPLMFFIRPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLV 233
Query: 123 EDLVDLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTDPA---EEALLSKPENMEPGK 179
ED +DL+H TDP EE LL + +PG+
Sbjct: 234 EDFIDLSHSIIIAFTVVLFAILLVPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQ 293
Query: 180 SN--QETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPH 237
S E+I SEVEDEKPK+VDLLPA ER KRIAQLQA+L AAAEGAVRVKRRRGPH
Sbjct: 294 STTPDHGPELIFSEVEDEKPKEVDLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPH 353
Query: 238 RGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWN 297
RGEDFTLTQAL+KADFWLIFF TVIDNLGQMSQSLGYDNTH+FVSMISIWN
Sbjct: 354 RGEDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWN 413
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR+GGGYFSE+IVRDYAYPRPVA+AVAQ VM++GHIF GWPGAM++GTLLIGLGYG
Sbjct: 414 FLGRIGGGYFSELIVRDYAYPRPVAIAVAQLVMSVGHIFFAYGWPGAMHIGTLLIGLGYG 473
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHL 417
AHWAIVPA ASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS IYD EAE+Q Q
Sbjct: 474 AHWAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGLIASSIYDREAERQAQ----- 528
Query: 418 LNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGK 477
GS+F P D+ L+C GSICYFLTS+IMSG C++A LSMILV RT VY++LYGK
Sbjct: 529 ---GSLFN--P--DDVLRCRGSICYFLTSLIMSGFCLIAAALSMILVQRTKPVYTNLYGK 581
Query: 478 SRS 480
+R+
Sbjct: 582 TRN 584
|
|
| TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1705 (605.2 bits), Expect = 1.6e-175, P = 1.6e-175
Identities = 337/481 (70%), Positives = 383/481 (79%)
Query: 3 MCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPD 62
MC+LIFVGNNGETYFNT ALVS VQNFPKSRGPVVGILKGFAGLGGAI++Q+YTMIH+ +
Sbjct: 114 MCVLIFVGNNGETYFNTGALVSGVQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSN 173
Query: 63 HANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLV 122
A+LI MVAV PA+VV+ LMF IRPVGGH+Q+RP+D +SFTFIY VCLLLAAYLM VML+
Sbjct: 174 PASLILMVAVTPAVVVVCLMFFIRPVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLI 233
Query: 123 EDLVDLNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXERTDP---AEEALLSKPENMEPGK 179
+DLV ++H E +P EE L+ K E+ EPG
Sbjct: 234 QDLVVVSHNVITVFTIVLFVILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGL 293
Query: 180 SNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGPHRG 239
+T ++ILSEVEDEKPKDVDLLPASER KRIA LQA+L AAAEGAVRV RRRGPHRG
Sbjct: 294 ---QTPDLILSEVEDEKPKDVDLLPASERHKRIAHLQAQLMQAAAEGAVRVNRRRGPHRG 350
Query: 240 EDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFVSMISIWNFL 299
EDFTLTQAL+KADFWLIFF TVIDNLGQMSQSLGYDNTH+ VSMISIWNFL
Sbjct: 351 EDFTLTQALVKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFL 410
Query: 300 GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAH 359
GR+GGGYFSE++VRDYAYPRPVAMAVAQ +M++GHIF GWPGAMY+GTLLIGLGYGAH
Sbjct: 411 GRIGGGYFSELVVRDYAYPRPVAMAVAQLIMSVGHIFFAYGWPGAMYIGTLLIGLGYGAH 470
Query: 360 WAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLN 419
WAIVPA ASELFGLKKFGALYNFLTLANPAGSLVFSG+IAS IYD EAE+Q H
Sbjct: 471 WAIVPATASELFGLKKFGALYNFLTLANPAGSLVFSGMIASSIYDREAERQ--AH----- 523
Query: 420 AGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 479
GS+F P D+ L+C GSIC+FLTS+IMSG CI+A +LSMILV RT +VY+HLYGK+R
Sbjct: 524 -GSVFD--P--DDALRCNGSICFFLTSLIMSGFCIIACMLSMILVRRTKSVYTHLYGKTR 578
Query: 480 S 480
+
Sbjct: 579 T 579
|
|
| TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
Identities = 130/246 (52%), Positives = 169/246 (68%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFV 290
+++R P GEDFTL QAL +ADFWLIF T+IDNLGQ+ SLGY NT IFV
Sbjct: 304 EKKRAPCIGEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFV 363
Query: 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTL 350
S+ISI NFLGRV GGYFSE+I+R + PR +AM+V Q +M++G I+ + WPG +YV T+
Sbjct: 364 SLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTI 423
Query: 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410
+IG+GYGAHWAI PA+ S++FGLK FG+LYNF A P GS VFSG+IAS IYD+ A KQ
Sbjct: 424 VIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQ 483
Query: 411 HQPHHHLLNAGSIFTSMPRVD-EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469
AG P + E L C GS+CY +T +MS LC++A++LS+ +V+RT
Sbjct: 484 ---------AG------PTTETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRK 528
Query: 470 VYSHLY 475
Y L+
Sbjct: 529 FYLRLH 534
|
|
| TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 639 (230.0 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
Identities = 130/246 (52%), Positives = 169/246 (68%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHIFV 290
+++R P GEDFTL QAL +ADFWLIF T+IDNLGQ+ SLGY NT IFV
Sbjct: 304 EKKRAPCIGEDFTLLQALGQADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFV 363
Query: 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTL 350
S+ISI NFLGRV GGYFSE+I+R + PR +AM+V Q +M++G I+ + WPG +YV T+
Sbjct: 364 SLISISNFLGRVAGGYFSELIIRKLSLPRTLAMSVVQAIMSLGLIYYAIDWPGKIYVVTI 423
Query: 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410
+IG+GYGAHWAI PA+ S++FGLK FG+LYNF A P GS VFSG+IAS IYD+ A KQ
Sbjct: 424 VIGMGYGAHWAIAPASVSDIFGLKSFGSLYNFQITALPIGSFVFSGVIASNIYDYYARKQ 483
Query: 411 HQPHHHLLNAGSIFTSMPRVD-EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469
AG P + E L C GS+CY +T +MS LC++A++LS+ +V+RT
Sbjct: 484 ---------AG------PTTETESLVCTGSVCYSVTCSLMSMLCLMAMVLSLSVVYRTRK 528
Query: 470 VYSHLY 475
Y L+
Sbjct: 529 FYLRLH 534
|
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| TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 6.5e-68, Sum P(3) = 6.5e-68
Identities = 82/200 (41%), Positives = 121/200 (60%)
Query: 209 RKRIAQLQARLFHAAAEGAVRV-KRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXX 267
R IA + + AA A K+R+ P GED T+ +A++ DFW++F
Sbjct: 285 RSEIAAAEKEVIVVAAVAAEEEEKKRKKPVLGEDHTIMEAVLTVDFWVLFVSFLCGVGTG 344
Query: 268 XTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327
V++N+GQ+ +LGY N IFVSM SIW F GR+ G SE ++ PRP+ A +Q
Sbjct: 345 LAVMNNMGQIGLALGYTNVSIFVSMTSIWGFFGRILSGTLSEYFLKKAGTPRPLWNAASQ 404
Query: 328 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLAN 387
+MA+G+I + + P ++Y+G++++G+ YG AI ASELFGLK +G +YN L L
Sbjct: 405 ILMAVGYILMALAVPNSLYIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILVLNL 464
Query: 388 PAGSLVFSGLIASYIYDHEA 407
P GS +FSGL+A ++YD EA
Sbjct: 465 PLGSFLFSGLLAGFLYDAEA 484
|
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| TAIR|locus:2056103 AT2G39210 "AT2G39210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 449 (163.1 bits), Expect = 2.9e-66, Sum P(2) = 2.9e-66
Identities = 94/252 (37%), Positives = 144/252 (57%)
Query: 236 PHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMI 293
P RG+D+T+ QAL D ++F T IDNLGQ+ SLGY + FVS++
Sbjct: 328 PERGDDYTILQALFSVDMLILFLATICGVGGTLTAIDNLGQIGNSLGYPKRSVSTFVSLV 387
Query: 294 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIG 353
SIWN+ GRV G SEI + Y +PRP+ + + + GH+ + PG +YV +++IG
Sbjct: 388 SIWNYYGRVVSGVVSEIFLIKYKFPRPLMLTMVLLLSCAGHLLIAFNVPGGLYVASVIIG 447
Query: 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQP 413
+GA W ++ A SE+FGLK + LYNF ++A+P GS + + +A Y+YD EA KQ++
Sbjct: 448 FCFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGSYLLNVRVAGYLYDVEAGKQYKA 507
Query: 414 HHHLLNAGSIFTSMPRVD-EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVY- 471
RV+ + L C G+ C+ L+ +I++ + + V++SM+LV RT Y
Sbjct: 508 -----------LGKTRVEGQDLNCIGTSCFKLSFIIIAAVTLFGVLVSMVLVIRTKKFYK 556
Query: 472 SHLYGKSRSSNL 483
S +Y K R L
Sbjct: 557 SDIYKKFREKAL 568
|
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| TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 2.4e-64, Sum P(3) = 2.4e-64
Identities = 74/182 (40%), Positives = 113/182 (62%)
Query: 226 GAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDN 285
G + ++ P GE+ T+ +A++ DFW++F V++N+GQ+ +LGY +
Sbjct: 324 GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTD 383
Query: 286 THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAM 345
IFVSM SIW F GR+ G SE ++ PRP+ A AQ +MA+G++ + + PG++
Sbjct: 384 VSIFVSMTSIWGFFGRILSGTISEHFIKKAGTPRPLWNAAAQIIMAVGYLLMALALPGSL 443
Query: 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405
Y+G++++G+ YG AI ASELFGLK +G +YN L L P GS +FSGL+A +YD
Sbjct: 444 YIGSMVVGVCYGVRLAITVPTASELFGLKYYGLIYNILILNMPLGSFLFSGLLAGLLYDA 503
Query: 406 EA 407
EA
Sbjct: 504 EA 505
|
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| TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 410 (149.4 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
Identities = 91/250 (36%), Positives = 137/250 (54%)
Query: 236 PHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMI 293
P RGED+T+ QAL+ D ++F T +DNLGQ+ +SLGY N + FVS++
Sbjct: 319 PPRGEDYTILQALLSTDMIILFVATFCGLGSSLTAVDNLGQIGESLGYPNHTVSSFVSLV 378
Query: 294 SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIG 353
SIWN+ GRV G+ SE ++ Y PRP+ M + + GH+ + PG++Y+ ++L+G
Sbjct: 379 SIWNYFGRVFSGFVSEYLLAKYKLPRPLMMTLVLLLSCAGHLLIAFPVPGSVYIASILMG 438
Query: 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQP 413
+GA ++ A SELFGLK + L+N LA+P GS + + + +YD EA KQ
Sbjct: 439 FSFGAQLPLLFAIISELFGLKYYSTLFNCGQLASPLGSYILNVRVTGMLYDKEALKQ--- 495
Query: 414 HHHLLNAGSIFTSMPRVD-EPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 472
L A + R D + L C GS CY L +I++ + ++S+ L RT Y
Sbjct: 496 ----LTA----RGLTRKDVKDLTCLGSQCYKLPFLILAAVTFFGALVSLGLAIRTREFYK 547
Query: 473 -HLYGKSRSS 481
+Y K R S
Sbjct: 548 GDIYKKFRES 557
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| TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 384 (140.2 bits), Expect = 1.9e-62, Sum P(3) = 1.9e-62
Identities = 81/189 (42%), Positives = 109/189 (57%)
Query: 222 AAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSL 281
A AEGAV+ KR+ P RGEDF Q +KADFWL++F TV +NL Q+ +
Sbjct: 318 AEAEGAVKKKRK--PRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQIGFAF 375
Query: 282 GYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW 341
G +T I + + S +NF+GR+ G SE VR PR + M AQ VM + M
Sbjct: 376 GIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLPRTLWMGAAQLVMVFTFLLFAMAI 435
Query: 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401
+YV T LIG+ G + + A SELFGL+ FG +NF+ L NP G+ +FS ++A Y
Sbjct: 436 DHTIYVATALIGICMGFQFLSI-ATISELFGLRHFGINFNFILLGNPLGATIFSAILAGY 494
Query: 402 IYDHEAEKQ 410
IYD EA+KQ
Sbjct: 495 IYDKEADKQ 503
|
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| TAIR|locus:2027284 AT1G74780 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 1.6e-61, Sum P(3) = 1.6e-61
Identities = 67/170 (39%), Positives = 106/170 (62%)
Query: 240 EDFTLTQALIKADFWLIFFXXXXXXXXXXTVIDNLGQMSQSLGYDNTHI--FVSMISIWN 297
E+ L QA+ K FWL+F + I+N+ Q+ +SL Y + I VS+ SIWN
Sbjct: 311 ENLNLLQAMKKLSFWLLFLAMICGMGSGLSTINNIRQIGESLRYSSVEINSLVSLWSIWN 370
Query: 298 FLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYG 357
FLGR G GY S+ ++ +PRP+ MA M+IGH+ + G+ G +YVG++++G+ YG
Sbjct: 371 FLGRFGAGYASDALLHKKGWPRPLLMAATLGTMSIGHLIIASGFQGNLYVGSVIVGVCYG 430
Query: 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407
+ W+++P SELFG++ G ++N +++A+P GS +FS + YIYD A
Sbjct: 431 SQWSLMPTITSELFGIRHMGTIFNTISVASPIGSYIFSVRLIGYIYDKTA 480
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.88.227.1 | annotation not avaliable (585 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 484 | |||
| pfam06813 | 248 | pfam06813, Nodulin-like, Nodulin-like | 5e-55 | |
| TIGR00890 | 377 | TIGR00890, 2A0111, oxalate/formate antiporter fami | 4e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-05 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 4e-05 | |
| PTZ00207 | 591 | PTZ00207, PTZ00207, hypothetical protein; Provisio | 0.001 | |
| TIGR04259 | 405 | TIGR04259, oxa_formateAnti, oxalate/formate antipo | 0.004 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.004 |
| >gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like | Back alignment and domain information |
|---|
Score = 184 bits (468), Expect = 5e-55
Identities = 56/151 (37%), Positives = 91/151 (60%)
Query: 2 QMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAP 61
+C+ I + N +FNTA+LV+C++NFP+SRG V+GILKG+AGL AI TQ+YT I
Sbjct: 98 LLCLAICLAGNSICWFNTASLVTCIRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGN 157
Query: 62 DHANLIFMVAVGPAMVVIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVML 121
D ++L+ + A+ P +V + ++ IRP G + S+S F + + LA YL+ + +
Sbjct: 158 DASSLLLLNALVPLVVSLVALYFIRPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSI 217
Query: 122 VEDLVDLNHTVIIIFTVILFVLLFIPIVIPI 152
+ DL+ I+ +LL +P+ +PI
Sbjct: 218 LSKSFDLSSAEYYALGAIMVLLLLVPLAVPI 248
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This family represents a conserved region within plant nodulin-like proteins. Length = 248 |
| >gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 4e-13
Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 12/171 (7%)
Query: 238 RGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISI 295
+D+T+ + L FW+++ S L + SGL +I QSLG + + VS+ SI
Sbjct: 192 SVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSI 251
Query: 296 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG--HIFLGMGWPGAMYVGTL-LI 352
+N GR G S+ I R M++ + A+G + +++ T+ L+
Sbjct: 252 FNGGGRPFLGALSDKI------GRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305
Query: 353 GLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403
+G ++ P+ S++FG A Y FL A + F GLIAS+
Sbjct: 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI-FGGLIASHAL 355
|
This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 35/154 (22%), Positives = 58/154 (37%), Gaps = 7/154 (4%)
Query: 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIV 312
L FF L G LT + Q L + +S+ + LG + GG S+ +
Sbjct: 180 LALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLG 239
Query: 313 RDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELF 371
R R + + + + A+G + L + + V LL+G G G + + ASEL
Sbjct: 240 R-----RRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELA 294
Query: 372 GLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405
+ G G + L+A + D
Sbjct: 295 PPEARGTASGLFNTFGSLGGALGP-LLAGLLLDT 327
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 36/156 (23%), Positives = 60/156 (38%), Gaps = 11/156 (7%)
Query: 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEI 310
L L G GL L +++ LG + VS S+ LG + GY S+
Sbjct: 2 LLLFLGFFLSGLDRGLLSP-ALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 311 IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASE 369
+ R + + + A+G + L + VG L+GLG GA + A +E
Sbjct: 61 ------FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE 114
Query: 370 LFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405
F K+ G + G+L+ L+ + +
Sbjct: 115 WFPPKERGRALGLFSAGFGLGALL-GPLLGGLLAES 149
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|140234 PTZ00207, PTZ00207, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 13 GETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQV 54
G F+ A+V+ + FP +RG VV I+K F GLG AIL +
Sbjct: 133 GCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSI 174
|
Length = 591 |
| >gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 36/177 (20%), Positives = 70/177 (39%), Gaps = 20/177 (11%)
Query: 231 KRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--- 287
K+ + DF+ + L FW+++ ++ + GL LG +++ G +
Sbjct: 187 KQAKVVQTRRDFSPGEMLRTPVFWVMYTMFVMVAAGGLMATAQLGPIAKDFGVADVPVTL 246
Query: 288 ---------IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG-HIFL 337
+S+ I N R G+ S+ I R+ M VA + +G ++
Sbjct: 247 LGLTMAALTFALSIDRILNGFTRPFFGWISDKIGREN------TMFVAFGIEGVGIYLLP 300
Query: 338 GMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393
G P A + + L+ +G +++ PA ++ FG K L A +L+
Sbjct: 301 TFGHNPVAFVILSALVFFAWGEIYSLFPATCADTFGSKYAATNAGLLYTAKGTAALL 357
|
This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 35/184 (19%), Positives = 58/184 (31%), Gaps = 3/184 (1%)
Query: 213 AQLQARLFHAAAEGAVRVKRRRGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVID 272
A L A L + R K L WL+ LL G +
Sbjct: 165 AVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLT- 223
Query: 273 NLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI 332
L + LG + ++ + LG +G + R R + + + A+
Sbjct: 224 YLPLYQEVLGLSAL-LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAAL 282
Query: 333 GHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 391
G L + + V LL+G G G + + A S+L ++ G A G
Sbjct: 283 GLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGG 342
Query: 392 LVFS 395
+
Sbjct: 343 ALGP 346
|
Length = 346 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| PTZ00207 | 591 | hypothetical protein; Provisional | 100.0 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 100.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.78 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.71 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.7 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.6 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.6 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.58 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.58 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.52 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.49 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.45 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.44 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.44 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.41 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.41 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.38 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.38 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.37 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.35 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.32 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.3 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.29 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.27 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.25 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.23 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.22 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.21 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.21 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.21 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.21 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.2 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.19 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.17 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.17 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.16 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.15 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.15 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.15 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.14 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.14 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.14 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.14 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.13 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.12 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.12 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.1 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.09 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.07 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.07 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.06 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.05 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.05 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.05 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.05 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.04 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.04 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.04 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.04 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.03 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.03 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.02 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.02 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.02 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.0 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.99 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.98 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 98.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.97 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.96 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.96 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.95 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.95 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.94 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.94 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 98.94 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.93 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.92 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.91 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.9 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.9 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.9 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.88 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.87 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.87 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.87 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.86 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.86 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 98.86 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.85 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.85 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.85 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.84 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 98.83 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.83 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.83 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.83 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.82 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.81 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.79 | |
| PRK12382 | 392 | putative transporter; Provisional | 98.79 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.79 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.78 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.77 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.76 | |
| PRK10054 | 395 | putative transporter; Provisional | 98.76 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.75 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.75 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 98.74 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.74 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.74 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.73 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.73 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.7 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.7 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.68 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.68 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.67 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.65 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.65 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.64 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.64 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.62 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 98.62 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.61 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.6 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.57 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.56 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.55 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.54 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.53 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.53 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.52 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.51 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 98.51 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.49 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.48 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.46 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.46 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.44 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.39 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.39 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.38 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.37 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.36 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.33 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.33 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.33 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.31 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 98.31 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.31 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.26 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.26 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.25 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.24 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.24 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 98.23 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.23 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.22 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.21 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.2 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.19 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.18 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.18 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.17 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.16 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.15 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.09 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.08 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.98 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.97 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 97.97 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.93 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 97.91 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 97.91 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.88 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 97.86 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 97.83 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 97.79 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.77 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 97.74 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 97.74 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 97.73 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 97.67 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 97.67 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.62 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 97.6 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.57 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 97.47 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 97.46 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 97.42 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 97.37 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 97.34 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 97.33 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 97.32 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 97.31 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 97.28 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 97.19 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 97.18 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 97.02 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 96.93 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 96.91 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 96.89 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 96.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 96.78 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.72 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 96.55 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 96.54 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 96.47 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 96.44 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.3 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 96.28 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 96.25 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 96.22 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 96.14 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 96.13 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 96.13 | |
| PRK11462 | 460 | putative transporter; Provisional | 95.98 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 95.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 95.52 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.11 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.84 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 94.63 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 94.35 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 94.22 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 93.7 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 92.52 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 90.8 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 90.02 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 89.9 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 89.4 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 86.3 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 86.23 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 86.21 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 85.18 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 84.72 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 84.42 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 84.06 |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-68 Score=574.26 Aligned_cols=407 Identities=20% Similarity=0.321 Sum_probs=340.3
Q ss_pred CchhHHHHHhhcCcccchhhhhHhHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q 011516 1 MQMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 80 (484)
Q Consensus 1 ~~~c~~~~l~~~g~~~~~ta~l~t~~~nFP~~RG~v~gl~k~~~GLSaai~s~i~~~~f~~d~~~fll~la~~~~~v~~~ 80 (484)
|++|++.++.|+|++++++++++++++|||++||+++|+.+++.|||++++++++.+++.+|.+.+++++++++.+++++
T Consensus 121 ~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll 200 (591)
T PTZ00207 121 VRLSVYNGLMTLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGIL 200 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeecccCCCCc---C---CCCCC-----------------CchhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHH
Q 011516 81 LMFIIRPVGGHRQ---V---RPSDS-----------------SSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFT 137 (484)
Q Consensus 81 ~~~~ir~~~~~~~---~---~~~~~-----------------~~f~~~~~~~~~l~~yl~~~~~~~~~~~~s~~~~~~~~ 137 (484)
+++++|.+|++.. + +++|+ .+|.+++++++++++||++++++++|+++++..+..++
T Consensus 201 ~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~ 280 (591)
T PTZ00207 201 AIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFA 280 (591)
T ss_pred HHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999998876532 1 11222 27999999999999999999999999999999999999
Q ss_pred HHHH-HHhhhc-cccceeecccccCCChhhhhhcCCCCCCCCCCCCCccchhhccccccCCCCcCCCCchhhHHHHHHHH
Q 011516 138 VILF-VLLFIP-IVIPIILSFFLERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQL 215 (484)
Q Consensus 138 ~~~~-~ll~~p-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (484)
++++ ++++.| +++|++. .+..++ + + +++ .++ .+. .+++++. +
T Consensus 281 ~v~~~lll~~p~l~ip~~~--~~~~~~-~-~----~~~--~~~---~~~--------~~~~~~~-~-------------- 324 (591)
T PTZ00207 281 VTVIVLTVIFPFMAFPLTT--FDGKRP-H-D----DSD--GKA---KEH--------VEAGEEV-S-------------- 324 (591)
T ss_pred HHHHHHHHHHHHHhhhHHH--hccCCc-C-C----Ccc--ccc---ccc--------ccccccc-c--------------
Confidence 9888 777788 7888764 211111 0 0 000 000 000 0000000 0
Q ss_pred HHHHHhhhhhhh-hhhhcc-CCCCCCCCCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CC-Chh--HH-
Q 011516 216 QARLFHAAAEGA-VRVKRR-RGPHRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GY-DNT--HI- 288 (484)
Q Consensus 216 ~~~~~~~~~~~~-~~~~~~-~~p~~~~~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~-~~~--~~- 288 (484)
+.+++ ...+.+ ..|++++ |++|++++.|||++|++++|+.|+|++++||++||++++ |+ ++. ..
T Consensus 325 -------~~~~~~~~~~~~~~~P~~~~--t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~ 395 (591)
T PTZ00207 325 -------AAEDKVVETDVDYIAPQFQE--TFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTL 395 (591)
T ss_pred -------ccccccccccccCCCCCCcc--hHHHHHhchhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceee
Confidence 00000 001112 3488766 999999999999999999999999999999999999999 77 333 33
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccC----CchhHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHhcccccch
Q 011516 289 FVSMISIWNFLGRVGGGYFSEIIVRDYA----YPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTLLIGLGYGAHWAIV 363 (484)
Q Consensus 289 ~VSl~si~n~~GRl~~G~lsD~~~~~~~----~~r~~~l~~~~~l~~~~~lll~~~~~-~~l~~~~~l~G~~~G~~~~l~ 363 (484)
+|+++|++|++||+++|++| .+.+|++ +||+.++++.++ +.+++++++...| ..||++++++|+|||++|+++
T Consensus 396 ~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~~~L~~~~~lvg~~~G~~~~~~ 473 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPKAALPLPYFIAAFANGFMAATI 473 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCccHhHHHHHHHHHHhhHhHHHH
Confidence 89999999999999999999 6655555 999999999988 8888888877666 899999999999999999999
Q ss_pred hHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccH
Q 011516 364 PAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYF 443 (484)
Q Consensus 364 p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~ 443 (484)
+++++|+|| ||+|++||+++++.++|+++||..++|++||++++|+ ++++|.|++||+
T Consensus 474 ~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~---------------------~~~~C~G~~C~~ 531 (591)
T PTZ00207 474 ALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL---------------------GQDVCTERVCVV 531 (591)
T ss_pred HHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC---------------------CCCeeCCceeeH
Confidence 999999999 9999999999999999999999999999999999765 456999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011516 444 LTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 476 (484)
Q Consensus 444 ~~f~i~~~~~~~~~~l~~~l~~r~r~~~~~~~~ 476 (484)
.+|+|++++|++|+++++++|+||||+|++..+
T Consensus 532 ~~~~v~~~~~~~g~~~s~~l~~R~r~~y~~~~~ 564 (591)
T PTZ00207 532 MPLAFLLGLSFLAFITSTYVHLQYRRLCLKALE 564 (591)
T ss_pred hHHHHHHHHHHHHHHHHhheeeehHHHHHHHHH
Confidence 999999999999999999999999999985533
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=293.13 Aligned_cols=152 Identities=45% Similarity=0.890 Sum_probs=145.5
Q ss_pred CchhHHHHHhhcCcccchhhhhHhHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q 011516 1 MQMCILIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHAPDHANLIFMVAVGPAMVVIA 80 (484)
Q Consensus 1 ~~~c~~~~l~~~g~~~~~ta~l~t~~~nFP~~RG~v~gl~k~~~GLSaai~s~i~~~~f~~d~~~fll~la~~~~~v~~~ 80 (484)
|+||++.++++||++|+|||+++||+||||+|||+|+|++|+|+||||+|||++|++||++|+++|++|+|++|.+++++
T Consensus 97 ~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~ 176 (250)
T PF06813_consen 97 WLMCLFLFLGGNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLV 176 (250)
T ss_pred HHHHHHHHHHcccHHHhhhHHHHHHHHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeecccCC--CCcCCCCCCCchhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHhhhccccce
Q 011516 81 LMFIIRPVGG--HRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPI 152 (484)
Q Consensus 81 ~~~~ir~~~~--~~~~~~~~~~~f~~~~~~~~~l~~yl~~~~~~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~ 152 (484)
+++++|++|+ +++++++|+++|...+.+++++++||+++++++++.++++..+..++++++++|++|++||+
T Consensus 177 ~~~~vr~~~~~~~~~~~~~~~~~F~~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~ 250 (250)
T PF06813_consen 177 AMFFVRPVPPSPSRTRQPSESKRFLFFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV 250 (250)
T ss_pred HhhheeccCCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence 9999999875 34556777889999999999999999999999999999999999999999999999999985
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-18 Score=186.47 Aligned_cols=335 Identities=20% Similarity=0.254 Sum_probs=232.3
Q ss_pred CchhH-HHHHhhcCcccchhhhhHhHhhhCCCCCCchhhhhhhhhhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHH
Q 011516 1 MQMCI-LIFVGNNGETYFNTAALVSCVQNFPKSRGPVVGILKGFAGLGGAILTQVYTMIHA--PDHANLIFMVAVGPAMV 77 (484)
Q Consensus 1 ~~~c~-~~~l~~~g~~~~~ta~l~t~~~nFP~~RG~v~gl~k~~~GLSaai~s~i~~~~f~--~d~~~fll~la~~~~~v 77 (484)
||+.+ |-.++|.|.++..+.+++..-.-|+++|+.|+|+..+--|++..+|..+-..+++ +....++.+.++. +-
T Consensus 135 ~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~--l~ 212 (509)
T KOG2504|consen 135 WQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGIS--LN 212 (509)
T ss_pred HHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHH--HH
Confidence 44444 5677999999999999999999999999999999999999999999999998884 4555555555554 55
Q ss_pred HHhhheeecccCCCCcCCCCCCCchhhHHHHHHHHHHHHHHHHHhhhcccCChhHHHHHHHHHHHHhhhccccceeeccc
Q 011516 78 VIALMFIIRPVGGHRQVRPSDSSSFTFIYSVCLLLAAYLMGVMLVEDLVDLNHTVIIIFTVILFVLLFIPIVIPIILSFF 157 (484)
Q Consensus 78 ~~~~~~~ir~~~~~~~~~~~~~~~f~~~~~~~~~l~~yl~~~~~~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~~~~~~ 157 (484)
++++....||..++.... .+++ .++ +. .+
T Consensus 213 ~~~~~~~~rp~~~~~~~~-~~~~---------------------~~~----~~-----------------------~~-- 241 (509)
T KOG2504|consen 213 VLVAGALLRPLSPPKKPN-EEKD---------------------LRN----SA-----------------------AS-- 241 (509)
T ss_pred HHHHHHHcCCCCcCCCch-hhhh---------------------hcc----cc-----------------------cc--
Confidence 566667788765443221 1000 000 00 00
Q ss_pred ccCCChhhhhhcCCCCCCCCCCCCCccchhhccccccCCCCcCCCCchhhHHHHHHHHHHHHHhhhhhhhhhhhccCCC-
Q 011516 158 LERTDPAEEALLSKPENMEPGKSNQETDEVILSEVEDEKPKDVDLLPASERRKRIAQLQARLFHAAAEGAVRVKRRRGP- 236 (484)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p- 236 (484)
.+..+.+.+. . . .+.++.... .++. + ....++ .+.+.++.+
T Consensus 242 ~~~~~~~~~~--~-~---------~~~~~~~~~--~~~~--~------~~~~~~----------------~~~~~~~~~~ 283 (509)
T KOG2504|consen 242 VESTPKPVEL--R-I---------SERDSGLKK--LSLS--N------LATLKR----------------GPDKWRNSPL 283 (509)
T ss_pred cccccccccc--c-c---------ccCCCCCCc--cccc--c------hhhhhh----------------CCccccccch
Confidence 0000000000 0 0 000000000 0000 0 000000 000000001
Q ss_pred CCCCCCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhc
Q 011516 237 HRGEDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRD 314 (484)
Q Consensus 237 ~~~~~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~ 314 (484)
+..-+.--+++++++.||++.+...+....-......++.++++.|+++. +.++|++++.|.+||++.|++.|+...
T Consensus 284 ~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~- 362 (509)
T KOG2504|consen 284 QAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGI- 362 (509)
T ss_pred hhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCcccc-
Confidence 11011123678999999999999999988888888899999999999864 569999999999999999999998753
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 315 YAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 315 ~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
++.+...++.++.+++.++... .+...++..++++|++.|...++.+.++.|+.|.++++..||++.+..+++..
T Consensus 363 ---~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l- 438 (509)
T KOG2504|consen 363 ---RALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGAL- 438 (509)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHH-
Confidence 3344455555555555544443 45567889999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 394 FSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 394 ~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
.+|+++|++||.++ -|..+|+.++...+++.++++...
T Consensus 439 ~gpPiag~~~d~tg---------------------------------~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 439 VGPPIAGLLYDITG---------------------------------NYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cCcccceeeeeccC---------------------------------CeeeehhhcChHHHHHHHHHHHhH
Confidence 48999999999987 288999999998888888877766
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.8e-16 Score=156.44 Aligned_cols=175 Identities=26% Similarity=0.369 Sum_probs=135.6
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+.++.+|++++|++...+++.......+.....++.+++|.++. ....++.++.+.+|++.+|+++||++||+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~---- 272 (377)
T TIGR00890 197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT---- 272 (377)
T ss_pred hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----
Confidence 34567889999999988887766666666667777788887764 357889999999999999999999987542
Q ss_pred HHHHHHHHHHHHHHHHHhccc--h-hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGMGW--P-GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~~~--~-~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
+.+...+..++.+++...+ . ..++...++.|+++|..+++.+..+.|.++.++.++.+|+......+|.. ++|.
T Consensus 273 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~~ 349 (377)
T TIGR00890 273 --MSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGI-FGGL 349 (377)
T ss_pred --hhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHH-HHHH
Confidence 2333344444444433222 1 22334567889999999999999999999999999999999999999987 5899
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 458 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 458 (484)
+.|.++|..| |+..|.+.+++++++++
T Consensus 350 ~~g~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~ 376 (377)
T TIGR00890 350 IASHALTEIG----------------------------------FEYTFIVTGAFALTSLA 376 (377)
T ss_pred HHHHHHhhhc----------------------------------hhhHHHHHHHHHHHhcc
Confidence 9999999776 88999998888777653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.8e-15 Score=160.61 Aligned_cols=198 Identities=18% Similarity=0.146 Sum_probs=142.0
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
..+|++.+|.+++..++............+.+.++ .|++.. ....+++++++.+|++++|+++||+.++++.... +
T Consensus 248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~-~ 326 (452)
T PRK11273 248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG-V 326 (452)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHH-H
Confidence 36789999999988887766555566777888876 577643 3466788899999999999999999654332211 1
Q ss_pred HHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+. ..+..++.+++.. .+...+++...++|.+...........+.|.++.+..|+..|+......+|+.+.+|.+.
T Consensus 327 ~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~ 404 (452)
T PRK11273 327 FF--MTLVTIATIVYWLNPAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 404 (452)
T ss_pred HH--HHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhH
Confidence 11 1222222222211 222233344445555433333334456789999999999999998877777665678999
Q ss_pred HHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhccc
Q 011516 400 SYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYGKSR 479 (484)
Q Consensus 400 G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~~~~~~~~ 479 (484)
|+++|..| |+..|.++++.++++++...++.+-+||..+|+.+||+
T Consensus 405 g~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (452)
T PRK11273 405 GYTVDFFG----------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRHHEELLQKRN 450 (452)
T ss_pred HHHHHHhc----------------------------------chHHHHHHHHHHHHHHHHHHHHhccccchHHHHHhhhc
Confidence 99999876 89999999999999999999888888888999999987
Q ss_pred c
Q 011516 480 S 480 (484)
Q Consensus 480 ~ 480 (484)
.
T Consensus 451 ~ 451 (452)
T PRK11273 451 G 451 (452)
T ss_pred C
Confidence 5
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.1e-14 Score=148.23 Aligned_cols=192 Identities=14% Similarity=0.087 Sum_probs=126.8
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+.+|++.+|.+++..++..+....+...++.+.+ .+|.+.. ....++..+++.+|++++|+++||+++|+. ..
T Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~----~~ 328 (467)
T PRK09556 253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRA----LV 328 (467)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch----HH
Confidence 4789999999999988877666555566676765 4688754 357778889999999999999999987532 11
Q ss_pred HHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhH-HHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA-GSLVFSGLIAS 400 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~v-g~~l~~~~l~G 400 (484)
............+.+.. .+...+++..++.|++..+........+.|.++.++.|+..|++.....+ |.. ++|.+.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~-~~~~~~G 407 (467)
T PRK09556 329 ACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDS-FAKVGLG 407 (467)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHH-HHhhhHH
Confidence 11111111111122222 23334445666667533223323346677999999999999999887776 545 5899999
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
+++|.+.+.+ ..+. -+ ..-|+..|.++.++++++.++.+.+.
T Consensus 408 ~i~~~~~~g~-----------------~~~~---~~--~~~~~~~f~~~~~~~~~~~~~~~~~~ 449 (467)
T PRK09556 408 MIADPTKNGT-----------------PIFG---YT--LTGWAGTFAALDIAAIGCICLMAIVA 449 (467)
T ss_pred HHhccccccc-----------------cccc---cc--ccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999432100 0000 00 11299999999999999988887765
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-14 Score=150.54 Aligned_cols=177 Identities=14% Similarity=0.185 Sum_probs=133.9
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
+.++++.||.+.+..++......+....++++.+++|+++. ....++.++++.++|++.|+++|+...++ .|...+
T Consensus 236 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~--~~~~~~ 313 (455)
T TIGR00892 236 SLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRP--HVQYLF 313 (455)
T ss_pred HHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCH--HHHHHH
Confidence 57899999999888777666656666777888888888754 45888999999999999999999742211 111122
Q ss_pred HHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 324 ~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.+...+.+++.++.. ..+...+++..++.|+++|..+...+.++.|.++.++.|+.+|+..++..+|.. ++|.++|.+
T Consensus 314 ~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~-igp~i~G~l 392 (455)
T TIGR00892 314 SFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVL-IGPPLAGRL 392 (455)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHH-ccccceeee
Confidence 222222233333332 344556777888999999999999999999999999999999999999999987 589999999
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 458 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 458 (484)
+|..+ -|+..|.+.+++++++.+
T Consensus 393 ~~~~g---------------------------------~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 393 VDATK---------------------------------NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred ehhcC---------------------------------CcchHHHHhhHHHHHHHH
Confidence 99875 188888888887777665
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=140.12 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=131.1
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
.+.++.++++++|.+.+..++.......+....+.+.++ +|.++. ....++..+++.+|++++|+++||++||+...
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 285 (399)
T TIGR00893 206 YQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSL 285 (399)
T ss_pred cchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch
Confidence 356788999999999999888888777777777777754 577654 35778889999999999999999999875211
Q ss_pred hhHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHH-HhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGL-GYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~--~~~~~l~~~~~l~G~-~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
..............+...+.. .+.....+...+++. +.| .......++.|.++.++.|+.+|+......+|.. ++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-~~ 363 (399)
T TIGR00893 286 VFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGI-VG 363 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhh-hh
Confidence 100011111111111111111 112223333333333 444 6788889999999999999999999999999987 48
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
|.+.|.++|..+ .|+..|.+.++.++++.++.++
T Consensus 364 ~~i~g~l~~~~g---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 364 PIVIGAIAATTG---------------------------------SFAGALMVVAALALIGALSYLL 397 (399)
T ss_pred hHHhhhhccCCC---------------------------------chhHHHHHHHHHHHHHHHHHHH
Confidence 999999999765 3888999999888888776654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-13 Score=144.59 Aligned_cols=180 Identities=18% Similarity=0.154 Sum_probs=119.6
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
.++++.+|.+.+.+++.......+...++++.+ ++|++.. ....+++.+++.+||+++|+++||+.++++.+.....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~ 318 (434)
T PRK11663 239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIF 318 (434)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHH
Confidence 678899999988777655544344445666764 5687754 3588899999999999999999999554322221111
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 324 ~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
.+...+..+..+++...+...+++..+++|+...+...+....++|.++.++.|+..|+......+|.. ++|.+.|++.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~p~~~g~l~ 397 (434)
T PRK11663 319 AAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAA-LSGYPLAKVL 397 (434)
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHH-HhcccHHHHH
Confidence 222222222222222222222223333344332222334556789999999999999999999999987 5899999999
Q ss_pred hhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 404 DHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 404 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
|..| |+.+|.+.++++++++++.+
T Consensus 398 ~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 398 EIWH----------------------------------WTGFFVVISIAAGISALLLL 421 (434)
T ss_pred Hhcc----------------------------------cHHHHHHHHHHHHHHHHHHH
Confidence 9876 88999999988888766553
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=139.01 Aligned_cols=187 Identities=19% Similarity=0.139 Sum_probs=126.4
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+.+|++.+|.+.+..++...........++++.++ .|.+.. ....+++++.+.+|++++|+++||++++++...
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~--- 322 (438)
T TIGR00712 246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGAT--- 322 (438)
T ss_pred HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHH---
Confidence 47899999999887776655544566677788876 477653 346778899999999999999999976543321
Q ss_pred HHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
.........++.+.+.. .+....++..++.|++..+........+.|.++.++.|+..|+......+|+..++|.+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~ 402 (438)
T TIGR00712 323 GVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV 402 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhH
Confidence 11111111122222211 122223333344444322211122246789999999999999998777677655689999
Q ss_pred HHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 400 SYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 400 G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
|.+.|..| |..+|.++.+.++++.++.+++...+||
T Consensus 403 G~l~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 403 GYTVDFFG----------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHHHhcc----------------------------------chHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 99999765 8999999999999999998888776654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.8e-13 Score=139.75 Aligned_cols=196 Identities=16% Similarity=0.211 Sum_probs=146.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHH--HhcCCCh--hHHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS--QSLGYDN--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~--~slg~~~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.+-.++||-.|++.++.++.......+ +..++++ |..|++. +...++++.++...|.+++||+|||+.+.+|.|-
T Consensus 245 ~~YVL~Nk~iW~la~a~vfvYivR~gi-~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~ 323 (448)
T COG2271 245 VKYVLKNKLIWLLALANVFVYVVRYGI-NDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPM 323 (448)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchH
Confidence 345689999999999999999888777 4555554 4567775 4569999999999999999999999988777664
Q ss_pred hHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHH-HhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGL-GYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~-~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.. ++...+..++..+.++. +++....+..+++|+ -||.++ +.-..+.|.-..|..|+.-|++.+...+++..++..
T Consensus 324 ~~-i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~iGf~IyGPqm-LiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~ 401 (448)
T COG2271 324 AL-IFMLLITASLVLYWLAPNGSYLLDAILLFIIGFLIYGPQM-LIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGL 401 (448)
T ss_pred HH-HHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhhHHH-HHHHHHhccccHhhccchhchhhhHHHHhhHHhcCC
Confidence 32 22222323333333322 233444556677777 788884 555788898888899999999999888833346778
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhh
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLYG 476 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~~~~~ 476 (484)
..|++-|..| +...|++..+.++++.++.+.+..++++.+++..+
T Consensus 402 ~~g~i~d~~g----------------------------------W~g~Fi~~~~~a~l~~lll~~~~~~~~~~~~~~~~ 446 (448)
T COG2271 402 PLGYIADTWG----------------------------------WDGGFIVLSIAALLAILLLLPVWNAEERKIRDEKK 446 (448)
T ss_pred cceeeEecCC----------------------------------CcchHHHHHHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 8888888865 88899999999999999988888888877765543
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.4e-12 Score=130.20 Aligned_cols=177 Identities=11% Similarity=0.071 Sum_probs=127.7
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
.++++++|.+.+.+++.......+.+.++++.+++|.+.. ..+.+++++++.+||+++|+++||+++++. +.
T Consensus 201 ~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~------~~ 274 (393)
T PRK09705 201 VVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL------LM 274 (393)
T ss_pred cccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH------HH
Confidence 4577888988887766655555666778888888887754 458899999999999999999999877431 22
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhC-ccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 325 ~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG-~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
+...+..++.+++...++....+...+.|++.|..+......+.+.++ .++.|+.+|++.....++.. ++|.+.|++.
T Consensus 275 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~-~gp~~~G~l~ 353 (393)
T PRK09705 275 LALVLQLVGFCGFIWLPLQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG-LAPWFSGVLR 353 (393)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 233333444433321111111223456788888888877777778886 56789999999888888877 5899999999
Q ss_pred hhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 404 DHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 404 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|..| -|...|.+.++.++++.+..++.
T Consensus 354 ~~~g---------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 380 (393)
T PRK09705 354 SISG---------------------------------NYLMDWAFHALCVVGLMIITLRF 380 (393)
T ss_pred HHhC---------------------------------CchHHHHHHHHHHHHHHHHHHHh
Confidence 9876 28899999998888776665443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-12 Score=128.61 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=112.9
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
..++.++++.+|.+.+..++.......+....+.+.+ .+|.++. ....++..+.+.+|+++.|+++||..++++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~ 287 (379)
T TIGR00881 208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL 287 (379)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH
Confidence 4567889999999988888776665555555666664 4577654 357888999999999999999998755443221
Q ss_pred hHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.........++.+.+.. .+.....+..++.|+..++........+.|.++.++.|+.+|+..+...+|.. ++|
T Consensus 288 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~~~ 363 (379)
T TIGR00881 288 ---AVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGI-LAG 363 (379)
T ss_pred ---HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhh-hhh
Confidence 11111222222222221 22233445556667666566666678899999999999999999999889987 589
Q ss_pred HHHHHHHhhhh
Q 011516 397 LIASYIYDHEA 407 (484)
Q Consensus 397 ~l~G~iyD~~~ 407 (484)
.+.|.+.|..|
T Consensus 364 ~~~g~l~~~~g 374 (379)
T TIGR00881 364 LPLGYLADGFG 374 (379)
T ss_pred hhHHHHHHhhc
Confidence 99999999876
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-11 Score=129.11 Aligned_cols=178 Identities=15% Similarity=0.129 Sum_probs=129.4
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
++.+|++.+.+++.......+.+.++.+.+ .+|.+.. ...++++.+++.+||+++|+++||+++|+. +...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~------l~~~ 277 (394)
T PRK03699 204 GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRI------LTVL 277 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhH------HHHH
Confidence 457888888877766554455566777885 4587754 458889999999999999999999977532 1222
Q ss_pred HHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 327 QFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 327 ~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
..+.++..+++. ..+...+.+..++.|++.|..++...+...+.. .++.++.+|++.....+|+. ++|.+.|+++|.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~-i~p~~~G~l~~~ 355 (394)
T PRK03699 278 AGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLGSQQT-KVASPKLVNFILTCGTIGTM-LTFVVTSPIVAH 355 (394)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCHHHHHHHHHhhhHHHH-HHHHHHHHHHHH
Confidence 222233333332 334445556778889988888888877777765 46778889999988888887 589999999998
Q ss_pred hhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 406 EAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
.| ++.+|.+.+++++++.++++.+.+-.||
T Consensus 356 ~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (394)
T PRK03699 356 FG----------------------------------LQAALLTANGLYAVVFVMCILLGFVSKH 385 (394)
T ss_pred hC----------------------------------chhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 76 7789999999998888877766554444
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=4e-12 Score=136.34 Aligned_cols=184 Identities=17% Similarity=0.289 Sum_probs=121.9
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCC-c
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAY-P 318 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~-~ 318 (484)
.+++.++++.+|++++.+++..+....+.+.++.+.+ ..|.+.. ..+.+++.+++.+||+++|+++||++||+.. .
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~ 323 (476)
T PLN00028 244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRG 323 (476)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcch
Confidence 3567889999999999887776666666666777765 4588754 4588899999999999999999999986542 2
Q ss_pred hhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHH----HhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGL----GYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~----~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
|.+.+.+...+..+..+++.. .+.....+..++.++ ++|..+++.| + ++.|+.|+++|++..+..+|+
T Consensus 324 r~~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~-~~~~~~g~~~g~~~~~g~lg~-- 396 (476)
T PLN00028 324 RLWALWIVQTLGGVFCIWLGRANSLGAAIVVMILFSIFVQAACGATFGIVP----F-VSRRSLGVISGLTGAGGNVGA-- 396 (476)
T ss_pred hHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhhcccCc----c-cChhhchhhhhhhhccccHHH--
Confidence 444444444444443333332 222222333334444 4455555544 4 356899999999866554544
Q ss_pred HHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011516 394 FSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 467 (484)
Q Consensus 394 ~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~ 467 (484)
.++++++|.++. .-|+.+|.+.+++.+++.++.++++..+
T Consensus 397 ---~i~~~l~~~~~~-------------------------------~~y~~~f~~~~~~~~i~~~~~~~~~~~~ 436 (476)
T PLN00028 397 ---VLTQLLFFTGSS-------------------------------YSTETGISLMGVMIIACTLPVAFIHFPQ 436 (476)
T ss_pred ---HHHHHHHHhcCC-------------------------------ccHhhHHHHHHHHHHHHHHHHHheeccc
Confidence 455566664320 1399999999999999988888775433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=129.58 Aligned_cols=171 Identities=13% Similarity=0.063 Sum_probs=122.3
Q ss_pred HHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~ 331 (484)
|.++..+++.......+.+..+.+.++.|.++. ....++.++++.+|++..|+++||+++++. +.+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~------~~~~~~~~~ 296 (406)
T PRK11551 223 LLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRV------VLLIYAGIL 296 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HHHHHHHHH
Confidence 344444444433344455667888888887654 457888899999999999999999987532 122222333
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhc
Q 011516 332 IGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410 (484)
Q Consensus 332 ~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~ 410 (484)
++.+++. ..+...+++..++.|++.++..+..+.++.|.++.++.|+..|+......+|.. ++|.++|.++|..+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~~~g~l~~~~~--- 372 (406)
T PRK11551 297 ASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSM-AGPLLAGQLLALGR--- 372 (406)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHH-HHhhhHhhhhccCC---
Confidence 3333332 334445666778889988888888899999999999999999999999999987 58999999998754
Q ss_pred cCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 411 HQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
-|...|.+....++++.++++.+.
T Consensus 373 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 373 ------------------------------STVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred ------------------------------chHHHHHHHHHHHHHHHHHHHHHh
Confidence 166777777777767666666543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-11 Score=130.76 Aligned_cols=199 Identities=14% Similarity=0.149 Sum_probs=135.2
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
..+++.++++.+|.+++..++.......+...++.+.+ .+|.+.. ....++..++..+++++.|+++||+.+++...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~ 331 (465)
T TIGR00894 252 LPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS 331 (465)
T ss_pred CCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 35889999999999999988887777667777787775 4677653 34677889999999999999999998765544
Q ss_pred hhHH----HHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 319 RPVA----MAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 319 r~~~----l~~~~~l~~~~~lll~~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
|... ..+......+..+.... .+.....+...+.+.+.+......-....|..+ ++.|...|+..+...+|+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~ 410 (465)
T TIGR00894 332 LTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGL 410 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHH
Confidence 4322 11111111111111111 122223333444455555444444444556665 7999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011516 393 VFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 472 (484)
Q Consensus 393 l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~ 472 (484)
+ +|.+.|++.|.++. +-|+..|.+.++.++++.++...+...++..+.
T Consensus 411 i-~p~l~g~~~~~~~~-------------------------------~~~~~~f~~~~~~~~i~~i~~~~~~~~~~~~w~ 458 (465)
T TIGR00894 411 I-ASTLAGNILSQDSK-------------------------------NVWLIVFLIMAFVNILCVIFYLIFGSAERQDWA 458 (465)
T ss_pred H-HHHhhheeeCCCCc-------------------------------hHHHHHHHHHHHHHHHHHHHeeeeecceecCCC
Confidence 5 68899988876431 129999999999999998888776655555555
Q ss_pred h
Q 011516 473 H 473 (484)
Q Consensus 473 ~ 473 (484)
+
T Consensus 459 ~ 459 (465)
T TIGR00894 459 K 459 (465)
T ss_pred C
Confidence 3
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.3e-11 Score=124.39 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=128.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
.++.+|++.+|.+.+..++............+.+.+++|.+..+ ...++..+++.+|++..|+++||+++|+.. + +
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~-~-~ 292 (402)
T TIGR00897 215 ATILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTV-R-W 292 (402)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-H-H
Confidence 34578999999988887776655555666777777888887653 466788899999999999999999875421 1 1
Q ss_pred HHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~---~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
...+...+..+...... .++...+++..++.|++++..... ...+.|.+ .++.|+.+|+.+++..+|.. ++|.+
T Consensus 293 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~-~gp~i 369 (402)
T TIGR00897 293 FGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAF-LAPAI 369 (402)
T ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHH-HHHHH
Confidence 11111111111111111 123334566778889888876443 45667765 57999999999999999987 58999
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
+|.++|..| +..+|.+.+++.+++.++..++
T Consensus 370 ~g~l~~~~g----------------------------------~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 370 AVLFIGFFG----------------------------------AIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred HHHHHhhcc----------------------------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 999999876 7889999998888888777664
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.6e-11 Score=128.16 Aligned_cols=178 Identities=14% Similarity=0.120 Sum_probs=119.5
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
.+.+|.+++.++........+.+..+.+.+..|++.. ....++..+.+.+|+++.|+++||++||+. +.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~------~~~~~ 356 (481)
T TIGR00879 283 RRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL------LLIGA 356 (481)
T ss_pred HHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH------HHHHH
Confidence 4455555555554444333444555666677887753 347778889999999999999999987532 22223
Q ss_pred HHHHHHHHHHh-----ccc------hhHHHHHHHHHHHHhcccc-cchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 328 FVMAIGHIFLG-----MGW------PGAMYVGTLLIGLGYGAHW-AIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 328 ~l~~~~~lll~-----~~~------~~~l~~~~~l~G~~~G~~~-~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
.+++++.+++. ... .........+.+.++|..+ ++...++.|.++.++.++..|+......+|+.+ +
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i-~ 435 (481)
T TIGR00879 357 AGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI-V 435 (481)
T ss_pred HHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH-H
Confidence 33344433322 111 2222333444455555444 455566799999999999999999999999985 7
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 468 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r 468 (484)
+.++|.++|..+ |+..|.+.+++++++.++.+.+..++|
T Consensus 436 ~~~~~~~~~~~~----------------------------------~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 436 GFLFPTMLESIG----------------------------------VGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHhcC----------------------------------ccceehhHHHHHHHHHHHHheecccCC
Confidence 899999998765 677899999998888888776554433
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.2e-10 Score=120.98 Aligned_cols=153 Identities=14% Similarity=0.145 Sum_probs=114.9
Q ss_pred cchhhHHHhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Q 011516 272 DNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTL 350 (484)
Q Consensus 272 ~n~~~i~~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~ 350 (484)
..++.+.++.|.+......+++.++..+|++..|++.||+++++ .+.+...++.++.+++. .++...+++..+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (399)
T PRK05122 237 TFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLR------VAIVSLLVEILGLLLLWLAPSPWMALIGAA 310 (399)
T ss_pred HHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 33455556666655556778889999999999999999987643 12333334444444433 344445666778
Q ss_pred HHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCC
Q 011516 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRV 430 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (484)
+.|+++|..+......+.|.++.++.|+.+|+......+|..+ ++.+.|.+.|..|
T Consensus 311 l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~-~~~~~g~l~~~~g----------------------- 366 (399)
T PRK05122 311 LTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGI-TGPLAGLVASWFG----------------------- 366 (399)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcC-----------------------
Confidence 8999999888887788889999999999999999998888864 6789999998765
Q ss_pred CCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 431 DEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 431 ~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
|+.+|.+.+++++++.++...+..
T Consensus 367 -----------~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 367 -----------YPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999988888777665433
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.5e-10 Score=120.08 Aligned_cols=177 Identities=10% Similarity=0.101 Sum_probs=125.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.+|++.+|.+++..++......+..+.++++.++ .|.++. ....+++++.+.+|++..|+++||++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~----- 272 (390)
T PRK03545 198 LPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGF----- 272 (390)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhH-----
Confidence 3567889999887766665554444444555666665 576653 45778899999999999999999986531
Q ss_pred HHHHHHHHHHHHHHHHH--hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFL--GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll--~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
. .+...+...+.+++ ..++...+++..++.|++++.........+.+..+ ++.++..|+......+|.. +++.+
T Consensus 273 ~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~G~~~ 348 (390)
T PRK03545 273 L--LIAIALLLVCLLLLLPAANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIG-AGALL 348 (390)
T ss_pred H--HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHH-HHHHH
Confidence 1 12222222232222 23344456678888899988777777778888876 7889999988887777777 48999
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
.|+++|..+ ++..|.+.+.+.+++.+.....
T Consensus 349 ~G~~~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 349 GNQVSLHLG----------------------------------LSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHHHhccC----------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 8899999998888877775443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.8e-10 Score=120.52 Aligned_cols=158 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred CHHHHhhcHHHHHHHHHHH---HhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 243 TLTQALIKADFWLIFFSLL---LGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~---~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
+.++.++++.+|.+...+. +..+....+.+.++.+.++.|.++. ....++..+++.+|++++|+++||++||+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~- 298 (426)
T PRK12307 220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT- 298 (426)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-
Confidence 4677888988886554332 2222322345567777888888754 346788899999999999999999987531
Q ss_pred chhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHh--cccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGY--GAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVF 394 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~--G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~ 394 (484)
+.....+..+..+++. ........+..++.|+++ .+..++.|..+.|.|+.++.|+..|++.....+|+. +
T Consensus 299 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~-~ 372 (426)
T PRK12307 299 -----FSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGT-F 372 (426)
T ss_pred -----HHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHH-H
Confidence 1222222222322222 222222333444555543 344678889999999999999999999988888887 5
Q ss_pred HHHHHHHHHhhhh
Q 011516 395 SGLIASYIYDHEA 407 (484)
Q Consensus 395 ~~~l~G~iyD~~~ 407 (484)
+|.+.|++.|..+
T Consensus 373 gp~~~g~l~~~~g 385 (426)
T PRK12307 373 NSMAATWLGITMG 385 (426)
T ss_pred HHHHHHHHHHccc
Confidence 8999999998876
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.6e-11 Score=119.79 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=112.5
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
++.+|++.+|.+.+.+++.......+...++.+.++.|.+.. ....+++.++..+||++.|+++||+++++. .
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~-----~ 265 (355)
T TIGR00896 191 VRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRG-----I 265 (355)
T ss_pred chhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchH-----H
Confidence 457888999988777766555555566677888888888754 458889999999999999999999954321 1
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhC-ccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG-~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
+.+...+++++.+.+.........+..++.|+++|..++.....+.+.+. .++.++.+|++.....++.. ++|.+.|+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~gp~~~G~ 344 (355)
T TIGR00896 266 VAVLAVLQLVGLCGLLFAPMHGLWAWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAA-LGPLFVGV 344 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 22333344444443332222222335678899999999887777776665 45678889988877777776 58999999
Q ss_pred HHhhhh
Q 011516 402 IYDHEA 407 (484)
Q Consensus 402 iyD~~~ 407 (484)
++|..|
T Consensus 345 l~~~~g 350 (355)
T TIGR00896 345 LHDISG 350 (355)
T ss_pred HHHHhc
Confidence 999987
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.6e-10 Score=115.21 Aligned_cols=150 Identities=13% Similarity=0.066 Sum_probs=114.9
Q ss_pred chhhHHHhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHH
Q 011516 273 NLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLL 351 (484)
Q Consensus 273 n~~~i~~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l 351 (484)
..+.+.++.+.++.....+..+++..+|++..|.+.||+++++.. .+...+..++.+++. ..+...+++..++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 311 (392)
T PRK12382 238 FVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVA------IVSLLVETVGLLLLWLAPTAWVALAGAAL 311 (392)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeh------HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 344556666766655667778888999999999999999885432 222333344443333 3444456667888
Q ss_pred HHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCC
Q 011516 352 IGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVD 431 (484)
Q Consensus 352 ~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (484)
.|+++|..+......+.|.++.|+.|+.+|+..+...+|.. ++|.+.|.+.|..|
T Consensus 312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-ig~~~~g~l~~~~g------------------------ 366 (392)
T PRK12382 312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYG-VSGPLAGMLATSFG------------------------ 366 (392)
T ss_pred HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC------------------------
Confidence 99999988888888899999999999999999999889887 58999999999876
Q ss_pred CCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 432 EPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 432 ~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|+..|.+.+++.+++.++.+..
T Consensus 367 ----------~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 367 ----------YPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred ----------chHHHHHHHHHHHHHHHHHHhh
Confidence 8999999998888887766543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.7e-10 Score=116.51 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=116.1
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccc-cchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i-~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.++.+|++.+|.+.+..++......... +-.+.+.++ +|.++. ....+..+++..+|++..|+++||.++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 278 (365)
T TIGR00900 203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMA---- 278 (365)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH----
Confidence 4567889999988887776665555454 344455554 577654 34777888999999999999999887642
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.....+.+++.+++.. . +...+++..++.|+++|........++.|.++.++.|+.+|+......++.. +++.
T Consensus 279 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~g~~ 355 (365)
T TIGR00900 279 --LMTGAIFVIGLAILVVGLTPPNFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWP-LGLI 355 (365)
T ss_pred --HHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 222233333444433332 2 2445667888999999999999999999999999999999999999988887 5899
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
+.|.++|..|
T Consensus 356 ~~g~l~~~~g 365 (365)
T TIGR00900 356 LAGPLADHLG 365 (365)
T ss_pred HHHHHHHHcC
Confidence 9999999754
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.23 E-value=7e-10 Score=110.91 Aligned_cols=172 Identities=21% Similarity=0.327 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHhc-CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
+.+|.+.+..++.......+....+++.++. +.++. ....++..+.+.+|++.+|.++||+++|+. .+.+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~~ 249 (352)
T cd06174 175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL-----LLLIGL 249 (352)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-----HHHHHH
Confidence 4455555555555555555555555666554 55543 347778889999999999999999988542 233444
Q ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 328 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 328 ~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
.+..++.+++.. .+...+++..++.|++.+..+......+.|.++.++.++.+|+......+|..+ ++.+.|.++|..
T Consensus 250 ~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~g~l~~~~ 328 (352)
T cd06174 250 LLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGAL-GPLLAGLLLDTG 328 (352)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 455555554443 345567788999999999999999999999999999999999999999999884 789999999855
Q ss_pred hhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 407 AEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
+ |+..|.+.+++++++.++..+
T Consensus 329 ~----------------------------------~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 329 G----------------------------------YGGVFLILAALALLAALLLLL 350 (352)
T ss_pred C----------------------------------cchHHHHHHHHHHHHHHHhee
Confidence 4 889999999998888776543
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-10 Score=120.92 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=104.3
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHhc--CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL--GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl--g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
++++.+|...+.+++....-..+...++++.+++ |.++. ....++..+++.+|+++.|+++||+++|+. .+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~-----~~ 313 (412)
T TIGR02332 239 IFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH-----HT 313 (412)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH-----HH
Confidence 4578899999998888777667778899999885 44433 347788999999999999999999976421 11
Q ss_pred HHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 324 ~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.....+..++.++.. ..++...+.+..+.+++......+......|.|+.|+.++.+|+.+....+|.. ++|.+.|.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~-~~p~~~g~i 392 (412)
T TIGR02332 314 ALPYLFAAAGWLLASATDHNLIQLLGIIMASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSA-LSPFLIGIL 392 (412)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhh-hhhhhcccc
Confidence 122223333322221 222222222222333333333334445557889999999999999999999887 589999999
Q ss_pred Hhhhh
Q 011516 403 YDHEA 407 (484)
Q Consensus 403 yD~~~ 407 (484)
.|..|
T Consensus 393 ~~~~g 397 (412)
T TIGR02332 393 KDATG 397 (412)
T ss_pred cccCC
Confidence 99876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-10 Score=116.55 Aligned_cols=138 Identities=14% Similarity=0.140 Sum_probs=105.4
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHH
Q 011516 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAA 367 (484)
Q Consensus 289 ~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~ 367 (484)
..++.++.+.++++.+|+++||+++++. +.+...+..++.+.+. ..++..+++..++.|++.|...+.....+
T Consensus 263 ~~~~~~l~~~~~~~~~g~l~dr~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (408)
T PRK09874 263 IASVPGVAALLSAPRLGKLGDRIGPEKI------LITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLL 336 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchh------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHH
Confidence 4566778889999999999999987532 1222233333333332 23445566777889999999888888888
Q ss_pred HhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHH
Q 011516 368 SELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSM 447 (484)
Q Consensus 368 se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~ 447 (484)
.+..+.++.|+.+++......+|.. ++|.+.|.+.|..+ |+.+|.
T Consensus 337 ~~~~~~~~~g~~~~~~~~~~~~g~~-~gp~~~G~l~~~~g----------------------------------~~~~f~ 381 (408)
T PRK09874 337 VYNSSNQIAGRIFSYNQSFRDIGNV-TGPLMGAAISANYG----------------------------------FRAVFL 381 (408)
T ss_pred HHhCCcccceeeehHHHHHHHHHHH-hhHHHHHHHHhhcc----------------------------------hhHHHH
Confidence 8889889999999999988888887 58999999998765 899999
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 011516 448 IMSGLCIVAVILSMILVHRT 467 (484)
Q Consensus 448 i~~~~~~~~~~l~~~l~~r~ 467 (484)
+.+++++++.++......|.
T Consensus 382 ~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 382 VTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999888776654333
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.8e-10 Score=120.82 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=97.1
Q ss_pred ccchhhHHHhcCCChhH--------------HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHH
Q 011516 271 IDNLGQMSQSLGYDNTH--------------IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF 336 (484)
Q Consensus 271 i~n~~~i~~slg~~~~~--------------~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~ll 336 (484)
..+.+.+.+++|++... ....+..++..+|.+++|+++||++||+. +.+...++++..++
T Consensus 308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~------l~~~~~~~~~~~~~ 381 (502)
T TIGR00887 308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPI------QLMGFFILTVLFFV 381 (502)
T ss_pred ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhH------HHHHHHHHHHHHHH
Confidence 34467777888875321 13445556777899999999999998642 22233333333322
Q ss_pred Hh--cc--chhHHHHHHHHHHHHhc-ccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhcc
Q 011516 337 LG--MG--WPGAMYVGTLLIGLGYG-AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQH 411 (484)
Q Consensus 337 l~--~~--~~~~l~~~~~l~G~~~G-~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~ 411 (484)
+. .. +........++..+.++ +..++.....+|+|+.+.+++..|+......++++ +++.+.|+++|.++..++
T Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 460 (502)
T TIGR00887 382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI-IGQFGFLYLAQHGDPTKG 460 (502)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH-HHHHHhhhhhcccccccc
Confidence 22 11 11111111122222222 23445566789999999999999999999989987 478999999997642110
Q ss_pred CccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 412 QPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
. ....-+..+|.+.+++++++.+..+
T Consensus 461 --------------------~----~~~~~~~~~~~i~~~~~~~~~i~~~ 486 (502)
T TIGR00887 461 --------------------Y----PTGIWMGHVLEIFALFMFLGILFTL 486 (502)
T ss_pred --------------------c----cccccchHHHHHHHHHHHHHHHHhe
Confidence 0 0000156788999988888876543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.5e-10 Score=120.51 Aligned_cols=179 Identities=14% Similarity=0.131 Sum_probs=121.0
Q ss_pred CCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 241 ~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
..+.+++++++.+|...+...+.........+.+....++++.+.. ....+.++....|+++.|++.||++||+
T Consensus 313 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~l~dr~grr~----- 386 (505)
T TIGR00898 313 QYSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIY-LDLFISGLVELPAKLITLLLIDRLGRRY----- 386 (505)
T ss_pred CCcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChH-HHHHHHHHHHHHHHHHHHHHHHHhCCHH-----
Confidence 3478899999999988777665544432222222222334444432 3344667788899999999999998853
Q ss_pred HHHHHHHHHHHHHHHHHhc-cch--hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGM-GWP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~-~~~--~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.+..++.+++.+++.. .+. ....+..++.+++.+..+.+....++|+|+.+..++..|+..+...+|+. ++|.
T Consensus 387 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~-i~p~ 464 (505)
T TIGR00898 387 -TMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSI-ISPF 464 (505)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHH-HHhH
Confidence 223334444444444332 222 33445566777888888888899999999999999999999999999987 4888
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
+.| .+..+ +..+|.+.+++++++.++.+++
T Consensus 465 i~~--~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~l 494 (505)
T TIGR00898 465 LVY--LGEKW----------------------------------LFLPLVLFGGLALLAGILTLFL 494 (505)
T ss_pred HHH--HHHHH----------------------------------HhhHHHHHHHHHHHHHHHHHcC
Confidence 887 33332 4567888888888777766554
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=123.06 Aligned_cols=190 Identities=11% Similarity=0.098 Sum_probs=139.2
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCCh----------hHHHHHHHHHhhhhcccccccchhhhh
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN----------THIFVSMISIWNFLGRVGGGYFSEIIV 312 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~----------~~~~VSl~si~n~~GRl~~G~lsD~~~ 312 (484)
+.++.+|++.||.+.+..++.......+..+.+...++.|.++ ....+++..+...++++..|.++||++
T Consensus 200 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g 279 (418)
T TIGR00889 200 DAFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFG 279 (418)
T ss_pred hHHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456889999999888877765543333344455566666442 245888899999999999999999998
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHhc--cch---hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHh-hh
Q 011516 313 RDYAYPRPVAMAVAQFVMAIGHIFLGM--GWP---GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-LA 386 (484)
Q Consensus 313 ~~~~~~r~~~l~~~~~l~~~~~lll~~--~~~---~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~-~a 386 (484)
+|+ .+.+..++..++..++.. .+. ..+++..++.|+++|......+..++|.++.++.|+.+|+.+ ..
T Consensus 280 ~r~------~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~ 353 (418)
T TIGR00889 280 IKK------VMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMC 353 (418)
T ss_pred cHH------HHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 754 233344444444433332 212 345667888999999888888899999999999999999997 56
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 011516 387 NPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 466 (484)
Q Consensus 387 ~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r 466 (484)
..+|.. ++|.++|+++|..+..+ ..-|+.+|.+.++.++++.++...++.+
T Consensus 354 ~~lg~~-iGp~l~G~l~~~~g~~~----------------------------~~~~~~~f~~~~~~~~i~~~l~~~~~~~ 404 (418)
T TIGR00889 354 NGFGSL-LGYILSGVMVEKMFAYG----------------------------TFDWQTMWLFFAGYIAILAVLFMIFFKY 404 (418)
T ss_pred HhhHHH-HHHHHHHHHHHHhcccc----------------------------CCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778887 58999999999876321 0139999999999988888777776654
Q ss_pred h
Q 011516 467 T 467 (484)
Q Consensus 467 ~ 467 (484)
.
T Consensus 405 ~ 405 (418)
T TIGR00889 405 S 405 (418)
T ss_pred c
Confidence 4
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.8e-10 Score=116.37 Aligned_cols=145 Identities=8% Similarity=0.052 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
+.+|.+++.+++.......+.+..+.+.++.|.++. ....++.+++..+|++++|+++||++++ + .+.....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~--~~~~~~~ 323 (398)
T TIGR00895 250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR----V--TALLLLL 323 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH----H--HHHHHHH
Confidence 455555555555444443444445666677787754 3578888999999999999999999774 1 1112222
Q ss_pred HHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 329 VMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 329 l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
......++.. ..+...+++..++.|+++|...+...+.+.|.++.++.|+.+|+......+|.. ++|.+.|++
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~-~g~~~~G~l 397 (398)
T TIGR00895 324 GAVFAVLVGSTLFSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAI-IGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHH-HHHHhHHhc
Confidence 2222222222 345556777888999999999999999999999999999999999999889987 589998875
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-09 Score=114.60 Aligned_cols=155 Identities=10% Similarity=-0.019 Sum_probs=107.1
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
+..++++.+|.+++..++.... ..+....+.+.++ +|.++. ....++.+++..+|++++|+++|+..++ +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~----~-- 290 (417)
T PRK10489 218 RFLLASPVVGGIALLGGLLTMA-SAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG----L-- 290 (417)
T ss_pred HHHHcChHHHHHHHHHHHHHHH-HhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc----h--
Confidence 4467788877766554433222 2233445666666 677654 3477788999999999999999874321 2
Q ss_pred HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
.+.....+.+++.+++.. .+...+.+..++.|++.|.......+++.|.+..++.|+.+|+......+|.. +++.+.|
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-~g~~l~G 369 (417)
T PRK10489 291 LMLLSTLGSFLAVGLFGLMPMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDA-IGAALLG 369 (417)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHh-HHHHHHH
Confidence 223334444555544433 33334556677788888776677778899999989999999999998888887 5899999
Q ss_pred HHHhhhh
Q 011516 401 YIYDHEA 407 (484)
Q Consensus 401 ~iyD~~~ 407 (484)
.+.|..+
T Consensus 370 ~l~~~~g 376 (417)
T PRK10489 370 GLGAMMT 376 (417)
T ss_pred HHHHHhc
Confidence 9999876
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=127.61 Aligned_cols=136 Identities=18% Similarity=0.146 Sum_probs=103.0
Q ss_pred HHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHH
Q 011516 290 VSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAAS 368 (484)
Q Consensus 290 VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~s 368 (484)
..+.++...+|.+++|+++||++||+ .+.+..++.+++.+++.. .+...+++..++.|++.++.+.+..++++
T Consensus 601 ~~l~~l~~i~G~il~g~L~Dr~GRr~------~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 601 NFLGTLAVLPGNIVSALLMDKIGRLR------MLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHH------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999864 233444444544444433 33344555667788888889999999999
Q ss_pred hhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHH
Q 011516 369 ELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMI 448 (484)
Q Consensus 369 e~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i 448 (484)
|+|..+..++.+|+......+|++ ++|.++|.+.+.. +..+|++
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGai-igp~i~g~L~~~~-----------------------------------~~~pf~i 718 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAV-LGILIFGSFVGIT-----------------------------------KAAPILF 718 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh-----------------------------------hHHHHHH
Confidence 999999999999999999999998 5899999988642 3578888
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 011516 449 MSGLCIVAVILSMILVHRTT 468 (484)
Q Consensus 449 ~~~~~~~~~~l~~~l~~r~r 468 (484)
.+++.+++.++.+.+ ..||
T Consensus 719 ~a~~lll~~ll~~~L-PET~ 737 (742)
T TIGR01299 719 ASAALACGGLLALKL-PDTR 737 (742)
T ss_pred HHHHHHHHHHHHHhC-CCCc
Confidence 888888877776655 3444
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-09 Score=111.46 Aligned_cols=129 Identities=17% Similarity=0.225 Sum_probs=93.4
Q ss_pred cchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHH-HHHHHhcc-chhHHH
Q 011516 272 DNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI-GHIFLGMG-WPGAMY 346 (484)
Q Consensus 272 ~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~-~~lll~~~-~~~~l~ 346 (484)
...+.+.+ ++|.+.. ....++.+++..+|+++.|+++||++||+.+ .+...+..+ ...++... +...+.
T Consensus 259 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (405)
T TIGR00891 259 DLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY------VCSLLAGQLLIIPVFAIGANVAVLG 332 (405)
T ss_pred hhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh------HHHHHHHHHHHHHHHHhCCchHHHH
Confidence 44455554 5677754 3477889999999999999999999885422 112222211 11122222 233344
Q ss_pred HHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 347 ~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+...+.|++.++.+++.+..+.|.++.++.|+.+|+......+|.. ++|.++|.++|+.|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~g~~~~g~l~~~~g 392 (405)
T TIGR00891 333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGA-LAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 5557778888888999999999999999999999999888888887 58999999999887
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-10 Score=115.47 Aligned_cols=178 Identities=16% Similarity=0.157 Sum_probs=121.3
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc----CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL----GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl----g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
.++.+|++.+|.+.+...+.......+....+.+..+. +.+.. ....++..+.+.+|.+.+|+++||+++|+.
T Consensus 216 ~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~- 294 (420)
T PRK09528 216 ALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA- 294 (420)
T ss_pred HHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-
Confidence 34577888888776654444332222333344444332 33322 346777888899999999999999998642
Q ss_pred chhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhH-HhhhhhHHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF-LTLANPAGSLVFS 395 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~-~~~a~~vg~~l~~ 395 (484)
+.+...+..++.+++. ..++..+++..++.|++++.........+.|.++.+..++.++. ..+...+|.. ++
T Consensus 295 -----~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~-ig 368 (420)
T PRK09528 295 -----LLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAV-FL 368 (420)
T ss_pred -----hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHH-HH
Confidence 2233334444444433 34555666777888888877666666788899999999998877 3556678877 58
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
+.+.|+++|..| |+.+|.+.+++.+++.++.+.
T Consensus 369 ~~~~G~l~~~~G----------------------------------~~~~f~~~~~~~~i~~~~~~~ 401 (420)
T PRK09528 369 STLAGNLYDSIG----------------------------------FQGTYLILGGIVLLFTLISVF 401 (420)
T ss_pred HHHHHHHHHhhC----------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 899999999876 899999999887776655543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-09 Score=110.62 Aligned_cols=172 Identities=15% Similarity=0.152 Sum_probs=114.4
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
++.++++.+|......++....-..+.+.++.+.++.|.++. ...+++..+++.+|++..|++.||+++++ .
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~------~ 267 (381)
T PRK03633 194 WPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLL------V 267 (381)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHH------H
Confidence 446677778865443322211111222345666777787754 35788999999999999999999998753 2
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
+.....+..++.+.+. . ....+....+.|++.+..++.....+.|..+.++.+..++...+...+|.. ++|.+.|++
T Consensus 268 l~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-igp~~~G~l 344 (381)
T PRK03633 268 LRVQVFVVILGSIAML-S-QAAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSL-LGPSFTAML 344 (381)
T ss_pred HHHHHHHHHHHHHHHh-h-hHHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 2333333333333322 1 123344556677777766666667778888877888888888888889987 589999999
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 459 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 459 (484)
+|..+ ++..|.+.+++.+++.++
T Consensus 345 ~~~~g----------------------------------~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 345 MQNYS----------------------------------DNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHhC----------------------------------ccHHHHHHHHHHHHHHHH
Confidence 99875 778888887776655433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.7e-09 Score=114.81 Aligned_cols=156 Identities=13% Similarity=0.110 Sum_probs=116.2
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
.+.+++++||...+..++.........+.++.+.++ +|+++. ........++..+|++++|++.||+++|+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~------ 322 (485)
T TIGR00711 249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRK------ 322 (485)
T ss_pred HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHH------
Confidence 468899999998877776655555555666777765 577754 34677788999999999999999987743
Q ss_pred HHHHHHHHHHHHHHHHh--c---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLG--M---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~--~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.+.+...+++++.+++. . .+...+++..++.|++.|..+......+.+.++.++.|+..|+..+...+|+. +++
T Consensus 323 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~ 401 (485)
T TIGR00711 323 LVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGS-IGT 401 (485)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHH-HHH
Confidence 23344455555555443 1 12234566778899999988877777778889999999999999999888887 488
Q ss_pred HHHHHHHhhhh
Q 011516 397 LIASYIYDHEA 407 (484)
Q Consensus 397 ~l~G~iyD~~~ 407 (484)
.+.|.++|...
T Consensus 402 ~i~g~~~~~~~ 412 (485)
T TIGR00711 402 ALITTILTNRT 412 (485)
T ss_pred HHHHHHHHHHH
Confidence 99999998654
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.9e-09 Score=113.52 Aligned_cols=132 Identities=10% Similarity=0.118 Sum_probs=89.5
Q ss_pred ccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH-HHHHHH--HHHh-ccc
Q 011516 269 TVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF-VMAIGH--IFLG-MGW 341 (484)
Q Consensus 269 ~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~-l~~~~~--lll~-~~~ 341 (484)
.+...++++.+ .+|++.. ....+...++..+|++++|+++||++||+. +.+... +...+. +... ..+
T Consensus 268 ~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~------~~~~~~~~~~~~~~~~~~~~~~~ 341 (490)
T PRK10642 268 MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPF------VILGSVALFVLAIPAFILINSNV 341 (490)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455677764 4677654 335667788899999999999999998642 122221 111111 1111 223
Q ss_pred hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
...++++.++.|+++|..++..+..+.|+|..+..|+..|+.+....+++. ++|.+.|++.|..+
T Consensus 342 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~-~~p~i~g~l~~~~~ 406 (490)
T PRK10642 342 IGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAG-LTPTLAAWLVESTQ 406 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhC
Confidence 344566777888888888888999999999999999999976544445554 47899999998654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.9e-09 Score=109.59 Aligned_cols=157 Identities=8% Similarity=-0.023 Sum_probs=119.8
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+.++.+|+++||.+.+..++..++...+....+++.+++|.++.. .+.++..+...++.+.+|.+.||+++++
T Consensus 197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~----- 271 (382)
T TIGR00902 197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARD----- 271 (382)
T ss_pred hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHH-----
Confidence 356789999999999988887777777777888888999888653 4666677777777777777777776532
Q ss_pred HHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHh-hhhhHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-LANPAGSLVFSGLI 398 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~-~a~~vg~~l~~~~l 398 (484)
.+.+..+...+...++. .++...+++..++-|+++|..+......+.+. ..+++++..++.. ++.++|.. +++.+
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~-~g~~~ 348 (382)
T TIGR00902 272 -LLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIA-IFTAF 348 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 23455555555555554 34455677788999999999999998899987 7778888888865 46678887 47899
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
+|++||+.|
T Consensus 349 ~G~l~~~~g 357 (382)
T TIGR00902 349 AGFIYPTLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999999876
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.5e-09 Score=109.30 Aligned_cols=180 Identities=12% Similarity=0.097 Sum_probs=116.5
Q ss_pred HHhhcHHHHHHHHHHHH-hhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 246 QALIKADFWLIFFSLLL-GSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~-~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
..++++++|.+.+...+ ............+.+. +.+|.++.. ....+.++..+++.+++|+++||++||+..
T Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~---- 319 (438)
T PRK09952 244 ALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY---- 319 (438)
T ss_pred HHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----
Confidence 35677788877553322 2222223334445544 356776543 234456778889999999999999886421
Q ss_pred HHHHHHHHHHHHHHH--Hh--ccc-hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhh-hhHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIF--LG--MGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA-NPAGSLVFS 395 (484)
Q Consensus 322 ~l~~~~~l~~~~~ll--l~--~~~-~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a-~~vg~~l~~ 395 (484)
....++..++.+. +. ..+ ...+.+..++.|+++|..++..++++.|.|+.|+.++..|+.+.. ..+|+. ++
T Consensus 320 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~-~~ 396 (438)
T PRK09952 320 --ITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGG-FT 396 (438)
T ss_pred --HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHH-HH
Confidence 1122222222211 11 122 223334556668899988999999999999999999888886544 446776 58
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
|.+.|+++|..+. -|+..|.+.++.++++.+..+.+.
T Consensus 397 p~i~g~l~~~~~~--------------------------------~~~~~~~~~~~~~~i~~v~~~~~~ 433 (438)
T PRK09952 397 PFIAAALVTYFGG--------------------------------SWHSVAIYLLAGCLISAMTALLMK 433 (438)
T ss_pred HHHHHHHHHhcCC--------------------------------CchHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999987641 288889988888888877776543
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-10 Score=118.70 Aligned_cols=176 Identities=16% Similarity=0.289 Sum_probs=140.2
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
.+.+|+++.++++.......+...++.+.+++|.++.. ..++.+.+...++.+.+|+++||++||+. +....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~------~~~~~ 82 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNI------FFTAI 82 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH------HHHHH
Confidence 34689999998887777767777889999999998754 46788888899999999999999998642 22333
Q ss_pred HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 328 FVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 328 ~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
.+.+++.++.. ..+...+++..++.|++.|..++.....+.|.+..++.++.+|+......+|.. ++|.+.|.+.|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~g~l~~~~ 161 (471)
T PRK10504 83 VLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPL-LGPALGGLLVEYA 161 (471)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHhhc
Confidence 33444443332 345566788889999999999999999999999999999999999999889887 5899999999865
Q ss_pred hhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 011516 407 AEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 466 (484)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r 466 (484)
+ ||..|.+....++++.++......|
T Consensus 162 g----------------------------------w~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 162 S----------------------------------WHWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred c----------------------------------HHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4 9999999998888887777665444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=113.42 Aligned_cols=181 Identities=14% Similarity=0.172 Sum_probs=115.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChhHH--HH-HHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTHI--FV-SMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~~--~V-Sl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+++.++++.+|.+....++............+++. +.+|+++... .. .+..++..+|.+++|+++||+++++
T Consensus 215 l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~---- 290 (491)
T PRK11010 215 LRDFFGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFR---- 290 (491)
T ss_pred HHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----
Confidence 44566777788766555433322222223344554 4578876543 33 3445788999999999999998753
Q ss_pred hHHHH-HHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 320 PVAMA-VAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 320 ~~~l~-~~~~l~~~~~lll~~~--~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
...+. +...+..+...++... +...+....++..++.|..++...+...++...+.-++.||+.+....+|..+ .+
T Consensus 291 ~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~-~~ 369 (491)
T PRK11010 291 ALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVY-VG 369 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHH-HH
Confidence 11111 1111111122222222 22233344555455556555666677778888888899999999988999875 46
Q ss_pred HHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 397 LIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 397 ~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
.+.|+++|..| |+..|.+.+++++.+.++...+
T Consensus 370 ~~~G~l~~~~G----------------------------------~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 370 PVAGWFVEAHG----------------------------------WPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred HHHHHHHHHhC----------------------------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999776 9999999999999988777765
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-09 Score=110.14 Aligned_cols=148 Identities=11% Similarity=0.110 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
++.+.+..++....+..+...++.+.+ ++|++.. ..+++...++..+|+++.|+++||+++++ . +.+...+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~----~--~~~~~~~ 350 (496)
T PRK03893 277 GVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRK----A--YVCSLLI 350 (496)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----H--HHHHHHH
Confidence 444444444444444445566778885 7788764 45888999999999999999999998753 1 1222222
Q ss_pred HHHHHHHH-hccch--hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 330 MAIGHIFL-GMGWP--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 330 ~~~~~lll-~~~~~--~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
..+..+++ ..... ..+.+...+.++...+...+.|.++.|.++.++.|+.+|+......+|+. ++|.+.|.++|..
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-lgp~l~g~l~~~~ 429 (496)
T PRK03893 351 SQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGA-LAPILGALIAQRL 429 (496)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHH-HHHHHHHHHhccC
Confidence 22222222 12221 12222333334433345678899999999999999999999988888887 5899999999987
Q ss_pred h
Q 011516 407 A 407 (484)
Q Consensus 407 ~ 407 (484)
|
T Consensus 430 g 430 (496)
T PRK03893 430 D 430 (496)
T ss_pred C
Confidence 6
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=3e-09 Score=110.57 Aligned_cols=175 Identities=15% Similarity=0.109 Sum_probs=120.1
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH-HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH-IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~-~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
.+++++++++|.+++.+++....-..+.+-++++.++.|++... ...++.. ..|-+..|+++||..|+++ |...
T Consensus 185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~~~--r~~~ 259 (368)
T TIGR00903 185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARAGL--RSIY 259 (368)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhhhh--HHHH
Confidence 46789999999999999998888777777789999888876532 2333333 3444556999999977532 2222
Q ss_pred HHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
......++++..+++.. .++........+.|++.+..++...++++|.|..+..|+..|+.....-+|+.. +|.+.|.
T Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~-~~~~~~~ 338 (368)
T TIGR00903 260 IRAAALLIAAFFLALAFELNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVA-LALAAML 338 (368)
T ss_pred HHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHH-HHHHHHH
Confidence 22222233333333332 223333445556677777777778889999999999999999999988899874 6777776
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
+.. + .+..|.+.++.++++.+..
T Consensus 339 ~~~--~----------------------------------~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 339 FIS--S----------------------------------AEAYFTFLAILITIAFAIA 361 (368)
T ss_pred Hhc--C----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 662 3 5567777777777776664
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.12 E-value=4e-09 Score=107.51 Aligned_cols=158 Identities=17% Similarity=0.081 Sum_probs=108.0
Q ss_pred HHHHhhcHH--HHHHHHHHHHhhccccccccchhhHH-HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 244 LTQALIKAD--FWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 244 ~~~~l~~~~--FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
.++.++++. +|......++......+....++.+. +.+|.++. ....++..+.+.++++++|+++||++||+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-- 287 (394)
T TIGR00883 210 IRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV-- 287 (394)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH--
Confidence 445555554 77777666665555545555667777 45677654 346778889999999999999999987531
Q ss_pred hhHHHHHHHHHHHHHHH-H--Hh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHh-hhhhHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHI-F--LG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-LANPAGSLV 393 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~l-l--l~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~-~a~~vg~~l 393 (484)
.+.........+.+ + +. ..+...+++..++.|+++|..++...+.+.|.++.++.++.+|+.+ .+..+|+.
T Consensus 288 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~- 363 (394)
T TIGR00883 288 ---LIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGG- 363 (394)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhh-
Confidence 11111111111211 1 11 1233344556678899999999999999999999999999999854 55566765
Q ss_pred HHHHHHHHHHhhhh
Q 011516 394 FSGLIASYIYDHEA 407 (484)
Q Consensus 394 ~~~~l~G~iyD~~~ 407 (484)
++|.+.|.++|..+
T Consensus 364 ~~p~~~g~l~~~~g 377 (394)
T TIGR00883 364 FAPYIAAALVAMTG 377 (394)
T ss_pred HHHHHHHHHHHHcC
Confidence 58999999999876
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.6e-09 Score=112.93 Aligned_cols=182 Identities=15% Similarity=0.196 Sum_probs=125.1
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
++.+|+++-|++.+.+++..|.-..+.+.++.+.++ .++... ....+..+...++|.++|+++||+++++.
T Consensus 246 ~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v------ 318 (462)
T PRK15034 246 LPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV------ 318 (462)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH------
Confidence 458999999999999999888877776677777766 333322 23445678899999999999999988531
Q ss_pred HHHHHHHHHHHH-H-HHhcc----chhH-----HHHHHHHHHHHhcccccchhHHHHh--h---------------hCcc
Q 011516 323 MAVAQFVMAIGH-I-FLGMG----WPGA-----MYVGTLLIGLGYGAHWAIVPAAASE--L---------------FGLK 374 (484)
Q Consensus 323 l~~~~~l~~~~~-l-ll~~~----~~~~-----l~~~~~l~G~~~G~~~~l~p~i~se--~---------------FG~k 374 (484)
+.+..+.+.+.. . .+..+ .+-. ++...+..|+++|+.|-+.|.+..+ - -..|
T Consensus 319 l~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
T PRK15034 319 TLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVT 398 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHH
Confidence 122222222221 1 11111 1111 2223344588888888777755442 0 0113
Q ss_pred chhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHH
Q 011516 375 KFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCI 454 (484)
Q Consensus 375 ~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~ 454 (484)
+.|..-|++....++|++++ |+++|..+|.+| .|...|.+..+..+
T Consensus 399 ~~g~v~G~v~a~G~~Ggf~~-p~~~g~~~~~~g---------------------------------~~~~~~~~~~~~~~ 444 (462)
T PRK15034 399 ETAAALGFISAIGAVGGFFI-PQAFGMSLNMTG---------------------------------SPVGAMKVFLIFYI 444 (462)
T ss_pred HHHHHHHHHHHHHHcccchh-hHHHHHHHHHcC---------------------------------CcHHHHHHHHHHHH
Confidence 78899999999999999865 789999999887 38899999999988
Q ss_pred HHHHHHHHhhhhh
Q 011516 455 VAVILSMILVHRT 467 (484)
Q Consensus 455 ~~~~l~~~l~~r~ 467 (484)
++++++.+...|.
T Consensus 445 ~~~~~~w~~y~r~ 457 (462)
T PRK15034 445 VCVLLTWLVYGRR 457 (462)
T ss_pred HHHHHHHHHhccC
Confidence 8888887766554
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=104.28 Aligned_cols=174 Identities=17% Similarity=0.128 Sum_probs=120.2
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
.++++++|.++...++..+...++....+.+. +++|.++.. ...++..+....+++..|+++||+++|+. +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~------~ 268 (375)
T TIGR00899 195 LLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL------M 268 (375)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH------H
Confidence 45677788777666555443333444555555 456776543 35566667788899999999999987531 1
Q ss_pred HHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 324 ~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.+...+..+..+.+. .++...+++..++.|+++|...+.....+.|.+. ++.++..++......+|.. ++|.+.|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-~g~~~~g~~ 346 (375)
T TIGR00899 269 LLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYFQDLMP-GRAGAATTLYTNTGRVGWI-IAGSVGGIL 346 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 222222222222222 2334445566778899999888888888899886 5678999998888888887 589999999
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
+|..+ |+..|.+.++.++++.++...
T Consensus 347 ~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~ 372 (375)
T TIGR00899 347 AERWS----------------------------------YHAVYWFAIVMLIVALFCLLL 372 (375)
T ss_pred HHhcc----------------------------------chhHHHHHHHHHHHHHHHHhe
Confidence 98765 889999999888888776544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.9e-10 Score=112.78 Aligned_cols=165 Identities=18% Similarity=0.288 Sum_probs=126.5
Q ss_pred HHHHhhccccccccchh-hHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHH
Q 011516 259 SLLLGSGSGLTVIDNLG-QMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHI 335 (484)
Q Consensus 259 ~~~~~~g~g~~~i~n~~-~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~l 335 (484)
..++......++...++ .+.+++|.++. ....++..+...++.+.+|+++||++||+ .+.+...+.+++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 4 AFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRR------VLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCee------eEeehhhhhhhHHH
Confidence 33333333334445556 66778887754 45888999999999999999999998854 24445555555533
Q ss_pred HHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCcc
Q 011516 336 FLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPH 414 (484)
Q Consensus 336 ll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~ 414 (484)
+... .+...+++..++.|++.|..+.....++.|++..|+.++.+++......+|.. +++.++|.++|..+
T Consensus 78 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~~------- 149 (352)
T PF07690_consen 78 LLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSI-LGPLLGGFLISYFG------- 149 (352)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHCH-------
T ss_pred HhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhh-cccchhhhhhhccc-------
Confidence 3332 44447888999999999999999999999999999999999999999999997 58899999997765
Q ss_pred ccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 415 HHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
||..|.+.+++++++.++..++.
T Consensus 150 ---------------------------~~~~~~~~~~~~~~~~il~~~~~ 172 (352)
T PF07690_consen 150 ---------------------------WRWAFLISAILSLIAAILFILFL 172 (352)
T ss_dssp ---------------------------HCCHHHHHHHHHHHHHHHHHCCC
T ss_pred ---------------------------cccccccccchhhhhhhhHhhhh
Confidence 88899999999999887544443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=3e-09 Score=112.52 Aligned_cols=173 Identities=15% Similarity=0.167 Sum_probs=131.6
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
+..-++..++.+++.......+...++++.+++|.+..+ ...++..+...++++.+|+++||+++|+ .+.+.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~~~~~ 94 (434)
T PRK11663 21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARY------FMGIG 94 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCch------hHHHH
Confidence 344566666666666555555556678888899988653 5888999999999999999999998864 23444
Q ss_pred HHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 327 ~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
.++..++.+++.. .+...+++..++.|++.|..+.....++.|.|..|+.|+..|+...+..+|.. +++.+.|.++|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~ 173 (434)
T PRK11663 95 LIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGA-LIPLVVGAIALH 173 (434)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 4455555554433 34455666677889999999999999999999999999999999999999997 578999999886
Q ss_pred hhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 406 EAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
.+ ||..|.+.+..+++..++..+
T Consensus 174 ~g----------------------------------w~~~f~~~~i~~~~~~~~~~~ 196 (434)
T PRK11663 174 YG----------------------------------WRYGMMIAGIIAIVVGLFLCW 196 (434)
T ss_pred cc----------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 55 999999988777655544433
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.2e-09 Score=112.16 Aligned_cols=148 Identities=11% Similarity=0.170 Sum_probs=119.4
Q ss_pred ccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHH
Q 011516 269 TVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAM 345 (484)
Q Consensus 269 ~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l 345 (484)
+....++++.+++|.++.+ ..++...+...++++..|.++||++||+ .+.....+.+++.++.. .++...+
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~------~~~~~~~~~~~~~~~~~~~~~~~~l 111 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRY------VVILFAVLLTLSCLLVSFANSFSLL 111 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHH------HHHHHHHHHHHHHHHHHHHChHHHH
Confidence 3445678888999988753 5888999999999999999999999864 23344444455544443 3556678
Q ss_pred HHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccc
Q 011516 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFT 425 (484)
Q Consensus 346 ~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~ 425 (484)
++..++.|++.|..+...+.++.|+|..|+.++..++...+..+|.. ++|.+.+.+.+..+
T Consensus 112 ~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~~~l~~~~g------------------ 172 (394)
T PRK10213 112 LIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALV-IAAPLGSFLGELIG------------------ 172 (394)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcC------------------
Confidence 88899999999999999999999999999999999999999999887 58999999998765
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHH
Q 011516 426 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAV 457 (484)
Q Consensus 426 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~ 457 (484)
||..|.+.+.++++..
T Consensus 173 ----------------w~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 173 ----------------WRNVFNAAAVMGVLCI 188 (394)
T ss_pred ----------------HHHHHHHHHHHHHHHH
Confidence 8999998887665543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=111.18 Aligned_cols=170 Identities=12% Similarity=0.114 Sum_probs=136.0
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
.+.+|.+.+..++.......+...++.+.+++|.+.. ...++...++..+|.+.+|+++||++||+. +.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~ 75 (382)
T PRK10091 2 KKVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI------LLFLV 75 (382)
T ss_pred cchHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH------HHHHH
Confidence 3567888887777766666777788889999998765 458999999999999999999999988542 33444
Q ss_pred HHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 328 FVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 328 ~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
.+.+++.++.. .++...+++..++.|++.|......+.++.|+++.++.++..++...+..+|.. +++++.|.+.|..
T Consensus 76 ~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~~~ 154 (382)
T PRK10091 76 ALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANL-LGIPLGTYLSQEF 154 (382)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHH-HhccHHHHHhhhc
Confidence 44555555443 456677888899999999999888899999999999999999999988888887 4788999988765
Q ss_pred hhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 407 AEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
+ ||.+|.+.+..+++..+..
T Consensus 155 g----------------------------------wr~~f~~~~~~~~~~~~~~ 174 (382)
T PRK10091 155 S----------------------------------WRYTFLLIAVFNIAVLASI 174 (382)
T ss_pred c----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 4 8999999988777665543
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.2e-09 Score=117.80 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=130.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhcccc---c-cccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGL---T-VIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~---~-~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
+.+.-.++..|.+++..+++....- . +..-++++.+++|.+.. ..+.+++.++..+|.+++|+++||++||+.
T Consensus 156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~- 234 (742)
T TIGR01299 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQC- 234 (742)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-
Confidence 3444566778877766655543221 1 22234555567888764 358889999999999999999999999642
Q ss_pred chhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
+.+..++.+++.++.+ ..+...+++.-++.|++.|+.+++.+.+++|+++.++.|..++++.++..+|..+ ++
T Consensus 235 -----lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~il-a~ 308 (742)
T TIGR01299 235 -----LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIY-AA 308 (742)
T ss_pred -----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 2333333344433333 3455678888999999999999999999999999999999999999999999874 66
Q ss_pred HHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 397 LIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 397 ~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
.+++.+....+-+.. . + ..+...-||..|++.+..+++++++..
T Consensus 309 ~la~~il~~~G~~~~------------------~-g--~~~~~~gWR~l~~i~~lp~ll~ll~~~ 352 (742)
T TIGR01299 309 AMAWAIIPHYGWSFQ------------------M-G--SAYQFHSWRVFVIVCAFPCVFAIGALT 352 (742)
T ss_pred HHHHHHHHhccchhc------------------c-c--cccccccHHHHHHHHHHHHHHHHHHHH
Confidence 776666554442110 0 0 112234589988888777766655443
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-08 Score=107.29 Aligned_cols=192 Identities=11% Similarity=0.089 Sum_probs=116.2
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchh-hhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSE-IIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD-~~~~~~~~~r~ 320 (484)
+++.++++.||.+.+..+........+...++.+.++.+.++. ..+.++.++....+....+...| |... .+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~----~~~ 276 (400)
T PRK11646 201 MTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRL----EHR 276 (400)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----hHH
Confidence 4567788888876555443332222233445666677655443 23444445444433333333334 3322 121
Q ss_pred HHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+.....+.+++.+++.. ++...+.+..++.|++++...+..+.++.+..+.++.|+.+|+......+|.. ++|.++
T Consensus 277 --~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~-ig~~l~ 353 (400)
T PRK11646 277 --LMAGLLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRLGLALGGA-IGYIGG 353 (400)
T ss_pred --HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHH-hcccch
Confidence 23334444455444432 33334555667788888888888899999999999999999999999988887 589999
Q ss_pred HHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 011516 400 SYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSH 473 (484)
Q Consensus 400 G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~~ 473 (484)
|.++|..+... -+..+|.+.+.+++++.+. +....|+.|.-++
T Consensus 354 G~l~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 396 (400)
T PRK11646 354 GWLFDLGKALN------------------------------QPELPWMMLGIIGLITLLA-LYWQFSQKRIARR 396 (400)
T ss_pred HHHHHHHhhcC------------------------------CcchHHHHHHHHHHHHHHH-HHHHHhhchHHHh
Confidence 99999875210 1466777777777666544 3344455554443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.8e-09 Score=108.13 Aligned_cols=171 Identities=14% Similarity=0.152 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhhc-cccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSG-SGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 252 ~FWll~~~~~~~~g-~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
.++.....+.+... ...++...++.+.+++|.++. ....+++.++..++.+.+|+++||++||+ .+.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~------~~~~~~~ 78 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRP------VLLLGLF 78 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChH------HHHHHHH
Confidence 34444443333333 334555667888889998765 35888999999999999999999998853 2233444
Q ss_pred HHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 329 VMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 329 l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+.+++.+++. .++...+++..++.|++.|........++.|.+..++.++.+|+......+|.. +++.+.|.+.|..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 79 IFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPA-VAPLLGGYILVWLS 157 (385)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 4455554443 345566777889999999999999999999999999999999999999999987 58899999988765
Q ss_pred hhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 408 EKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|+.+|.+.++.+++..++..+.
T Consensus 158 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
T TIGR00710 158 ----------------------------------WHAIFAFLSLAGILLSALIFFI 179 (385)
T ss_pred ----------------------------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999888877776665543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-08 Score=103.52 Aligned_cols=174 Identities=17% Similarity=0.197 Sum_probs=110.2
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
.+|++.+|.++...+++............++.+ ..|.++. ..+.++.++++.+|+++.|+++||+++++. +
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~------~ 268 (382)
T PRK10091 195 FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI------A 268 (382)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH------H
Confidence 467888898877766654333333344455554 4677754 357889999999999999999999977432 2
Q ss_pred HHHHHHHHHHHHHHh-c-cchhHHHHHHHHHHHHhccccc-chhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLG-M-GWPGAMYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 324 ~~~~~l~~~~~lll~-~-~~~~~l~~~~~l~G~~~G~~~~-l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
.+...++.++.+++. . ++.....+..++.++++++... .....+.+.++.+..+...+ .....+|.. ++|.+.|
T Consensus 269 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~-~Gp~~~G 345 (382)
T PRK10091 269 AVTDFIIVLALLMLFFFGGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGG--QIAFNLGSA-IGAYCGG 345 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHHHH--HHHHHHHHH-HHHHHhH
Confidence 333444455544332 2 2233334444555665544333 23345566677677776533 345567776 5899999
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
.++|.++ -|+..|.+.++++++++.....
T Consensus 346 ~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 346 MMLTLGL---------------------------------AYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHccc---------------------------------CcchHHHHHHHHHHHHHHHHHH
Confidence 9999865 2899999988777766554443
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.5e-09 Score=110.74 Aligned_cols=182 Identities=19% Similarity=0.253 Sum_probs=140.3
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
..++.+.+++|-|.+.+.|+...|.-..+.+.++++.++. |.++.+ ...+++...+.+-|..+|++|||++.+|.
T Consensus 209 ~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-- 286 (417)
T COG2223 209 AQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-- 286 (417)
T ss_pred hHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH--
Confidence 4567788899999999999999999999999999999865 666543 68889999999999999999999988542
Q ss_pred hhHHHHHHHHHHHHHHHHHhcc-------ch-----hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhh
Q 011516 319 RPVAMAVAQFVMAIGHIFLGMG-------WP-----GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 386 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~~-------~~-----~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a 386 (484)
+.+....++++...+... .+ ..+....+..|++.|+.|-..|.+-. |+.|..-|++...
T Consensus 287 ----~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~-----~~~G~v~G~vga~ 357 (417)
T COG2223 287 ----TLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIPVIFP-----KETGAVTGIVGAI 357 (417)
T ss_pred ----HHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeechHHHH-----hhhhHHHHHHHHh
Confidence 222333333333222211 11 12334556678888888888885444 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 011516 387 NPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 466 (484)
Q Consensus 387 ~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r 466 (484)
..+|++.+ |...|..||.+| .|...|++....++++.++..+++.|
T Consensus 358 G~lGGf~l-p~~~g~~~~~tg---------------------------------~~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 358 GGLGGFFL-PLAFGVSLDLTG---------------------------------SYTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred ccccccch-hHHHHHHHHhcc---------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999865 899999999998 38889999999999988888887777
Q ss_pred hh
Q 011516 467 TT 468 (484)
Q Consensus 467 ~r 468 (484)
+|
T Consensus 404 ~~ 405 (417)
T COG2223 404 RR 405 (417)
T ss_pred cc
Confidence 65
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-09 Score=122.32 Aligned_cols=160 Identities=14% Similarity=0.093 Sum_probs=116.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.++.+.+++.+|.+.+.+++......++...++.+.++ +|.+.. ..+.+.++++..+|.++.|+++|+..+++..+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~ 296 (1140)
T PRK06814 217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPI 296 (1140)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehH
Confidence 35667889999999998888777766666778888765 577654 458899999999999999999987665433221
Q ss_pred hHHHHHHHHHHHHHHHHH------------------hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhh
Q 011516 320 PVAMAVAQFVMAIGHIFL------------------GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYN 381 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll------------------~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG 381 (484)
.. +...+..+.+.+. ...+...+++..+++|++.|......++++.+.+..++.|+.+|
T Consensus 297 ~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g 373 (1140)
T PRK06814 297 GA---LLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIA 373 (1140)
T ss_pred HH---HHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeH
Confidence 11 1111111111110 01333456677888999999999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 382 FLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 382 ~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
+..+...+|.. +++.+.|.++|..
T Consensus 374 ~~~~~~~~~~~-ig~~~~g~l~~~~ 397 (1140)
T PRK06814 374 ANNVLNAAFMV-AGTIILALLQALG 397 (1140)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHhc
Confidence 99999888877 4788999998754
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-08 Score=102.36 Aligned_cols=156 Identities=10% Similarity=0.019 Sum_probs=110.4
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+++|++.|+...+..++......+...-.+.+.+. +|.++.. .......+...+++.++|.++||+++|+.
T Consensus 256 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~------ 329 (471)
T PRK10504 256 KLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV------ 329 (471)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH------
Confidence 47899999998887776655433333344555553 6777543 36666777888899999999999977432
Q ss_pred HHHHHHHHHHHHHHHhc----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
+.+...+++++.+++.. .+...+.+..++.|++.|..++....++.+.+..++.|..+++..+...+|.. +++.+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~-ig~~i 408 (471)
T PRK10504 330 LVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMS-IGVTI 408 (471)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHH-HHHHH
Confidence 23333333333333222 11222344566778889988888889999999999999999999999989987 48899
Q ss_pred HHHHHhhhhh
Q 011516 399 ASYIYDHEAE 408 (484)
Q Consensus 399 ~G~iyD~~~~ 408 (484)
.|.+.|..+.
T Consensus 409 ~g~ll~~~g~ 418 (471)
T PRK10504 409 AGLLLGLFGQ 418 (471)
T ss_pred HHHHHHHhhh
Confidence 9999998774
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=103.13 Aligned_cols=157 Identities=11% Similarity=0.038 Sum_probs=109.2
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+.++.+|++.||.+.+..++.......+.+..+.+.++.|.++. ..+.++..+...++++..|.+.||+++++
T Consensus 197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~----- 271 (382)
T PRK11128 197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARD----- 271 (382)
T ss_pred hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 56789999999988777666554444455666777788888754 34666777788888888888888876643
Q ss_pred HHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHh-hhhhHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT-LANPAGSLVFSGLI 398 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~-~a~~vg~~l~~~~l 398 (484)
.+.+.....+++.+++. .+++..+++..++.|+++|......-..+.+.- ..+.++.+++.. ....+|.. ++|.+
T Consensus 272 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~-ig~~i 348 (382)
T PRK11128 272 -LLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYIAARP-GSEVIRLQALYSALAMGGSIA-IMTVL 348 (382)
T ss_pred -HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HhhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 23344445555544443 344556777888899999977666666666664 456678888775 44555655 58999
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
+|+++|..+
T Consensus 349 ~G~l~~~~g 357 (382)
T PRK11128 349 SGFLYQHLG 357 (382)
T ss_pred HHHHHHhcc
Confidence 999999876
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.6e-08 Score=104.10 Aligned_cols=180 Identities=13% Similarity=-0.022 Sum_probs=108.8
Q ss_pred CHHHHhhcHHHHHHHHHHHHh-hccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 243 TLTQALIKADFWLIFFSLLLG-SGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~-~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
++++.+|++.+|++.+.+++. ......+...++++.+ .+|.+..+ ...++..+...++..+.|+++||++||+.
T Consensus 234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~-- 311 (432)
T PRK10406 234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTS-- 311 (432)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH--
Confidence 467788999999887766654 3323334455677664 46777543 46667777888999999999999988631
Q ss_pred hhHHHHHHHHHHHHH---HHH-Hhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhH-HHH
Q 011516 319 RPVAMAVAQFVMAIG---HIF-LGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA-GSL 392 (484)
Q Consensus 319 r~~~l~~~~~l~~~~---~ll-l~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~v-g~~ 392 (484)
. .+...+.++. .+. ... .++........+.+++.|...+..+..+.|+|+.|+.++.+|+.+....+ .+.
T Consensus 312 --~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~ 387 (432)
T PRK10406 312 --M--LCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGG 387 (432)
T ss_pred --H--HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHh
Confidence 1 1111111111 111 111 12221122222233445555566778899999999999999999865433 232
Q ss_pred HHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 393 VFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 393 l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
..|.+.+ +.|.++ -|...|++.++.++++.+..+.+
T Consensus 388 -~~p~~~~-~l~~~g---------------------------------~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 388 -SAEYVAL-SLKSIG---------------------------------METAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred -HHHHHHH-HHHHhC---------------------------------CCcHHHHHHHHHHHHHHHHHHHh
Confidence 3566677 446554 15666777777777776665553
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.4e-08 Score=103.30 Aligned_cols=155 Identities=7% Similarity=0.030 Sum_probs=103.8
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhh-HHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~-i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
++.+|++.+|.+.+..++.......+.....+ +.+++|.++. ....+..++++.+|++++|.+.||..+ + .
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-----~-~ 283 (394)
T PRK10213 210 FRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-----L-A 283 (394)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-----h-H
Confidence 45788999998877655554444344444444 4456787764 346778888999999999988887422 1 1
Q ss_pred HHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFL-GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll-~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
.+.........+.++. ...++..+++..++.|++++......+..+.+... ++.+...++.+....+|.. +++.++|
T Consensus 284 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~-~G~~l~G 361 (394)
T PRK10213 284 LAGAPLVLAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANT-CGAAIGG 361 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 1222222222222222 23344556678888999999988888877777664 6677777777777777776 5899999
Q ss_pred HHHhhhh
Q 011516 401 YIYDHEA 407 (484)
Q Consensus 401 ~iyD~~~ 407 (484)
+++|..|
T Consensus 362 ~l~~~~g 368 (394)
T PRK10213 362 YALDNIG 368 (394)
T ss_pred HHHhccC
Confidence 9999776
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.5e-08 Score=102.19 Aligned_cols=175 Identities=14% Similarity=0.198 Sum_probs=106.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccc-cchhhHHHhcCCChhHH--HHHHHH-HhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i-~n~~~i~~slg~~~~~~--~VSl~s-i~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.++.+|++.+|.+.+..++.......+. .+...+.+++|.++... ..+..+ ++..+|.+++|++.||+++|+..
T Consensus 202 ~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l-- 279 (402)
T PRK11902 202 LRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSL-- 279 (402)
T ss_pred HHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Confidence 4678999999987776655443322221 22233445678876543 434444 35789999999999999875421
Q ss_pred hHHHHHHHHHHHHHHHHHhc--cchhHHHHHH----HHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM--GWPGAMYVGT----LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~--~~~~~l~~~~----~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
+...+...+..+...++.. ++...+++.. +..|++++........++++.++.++++ +......++...
T Consensus 280 -~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ 354 (402)
T PRK11902 280 -MLFGVLQAVSNLGYWVLAVTPKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYA----LLSALASVGRVY 354 (402)
T ss_pred -HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHHHHHHHH
Confidence 1111111121122222222 2223333333 3456677777888888999988866654 444344566664
Q ss_pred HHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 394 FSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 394 ~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
. +.++|.++|..| |+..|.+.+.++++++++.
T Consensus 355 ~-~~~~G~l~~~~G----------------------------------~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 355 V-GPTSGYLVEAYG----------------------------------WPGFYLMTVVIALPGLALL 386 (402)
T ss_pred H-HHHHHHHHHHhC----------------------------------hHHHHHHHHHHHHHHHHHH
Confidence 4 468999999987 8889999888887765543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.2e-09 Score=110.13 Aligned_cols=176 Identities=11% Similarity=0.049 Sum_probs=129.0
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
++++|.+.+..++......++..-++.+. +++|.++. ...+++..+...++++..|+++||++||+. +.+.
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~------~~~~ 79 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY------MLLA 79 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh------HHHH
Confidence 34689998888887666556666666666 46798875 358888889999999999999999998642 2233
Q ss_pred HHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 327 QFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 327 ~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
..+..++.+++.. ++...+++...+.|.+++......+..+.|.++.++.++.+|+......+|.. ++|.+.|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~-igp~l~~~l~~- 157 (395)
T PRK10054 80 ITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWT-VGPPLGTLLVM- 157 (395)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-
Confidence 3334444444433 34444555566777777777778888999999999999999999999999887 58999999884
Q ss_pred hhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011516 406 EAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 467 (484)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~ 467 (484)
.+ |+.+|.+.+.+++++.++..+...|.
T Consensus 158 ~g----------------------------------~~~~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 158 QS----------------------------------INLPFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred hc----------------------------------cCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33 78899988888887766655544343
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.4e-08 Score=104.19 Aligned_cols=156 Identities=11% Similarity=-0.084 Sum_probs=104.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.++++.+|.+.+.+++............+.+. +.+|.++.. .......++..+|+++.|+++||+++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~---- 283 (406)
T PRK15402 208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL---- 283 (406)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH----
Confidence 35678999999988877665544333334445554 456777643 34455667888999999999999977532
Q ss_pred HHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVF 394 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~ 394 (484)
+.+..++++++.+++.. .+...+.+..++.|++.|..++.....+...- .++.|+..+++.+...+|.. +
T Consensus 284 --~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~-~ 359 (406)
T PRK15402 284 --IRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSS-DVSKGTVSAAMGMLSMLIFT-V 359 (406)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhc-cccccHHHHHHHHHHHHHHH-H
Confidence 22333334444433321 22344566788889999887765544443333 37899999999999888876 5
Q ss_pred HHHHHHHHHhhhh
Q 011516 395 SGLIASYIYDHEA 407 (484)
Q Consensus 395 ~~~l~G~iyD~~~ 407 (484)
++.+.|++||..+
T Consensus 360 g~~~~~~l~~~~~ 372 (406)
T PRK15402 360 GIELSKHAYLGGG 372 (406)
T ss_pred HHHHHHhcccCCc
Confidence 8999999998776
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=110.27 Aligned_cols=149 Identities=17% Similarity=0.293 Sum_probs=102.3
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhH-HHhcCCC-hhH--HHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSLGYD-NTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i-~~slg~~-~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+++..+++.+|.+++..++.......+...++.+ .+.+|.+ ... ...++.++...+++++.|+++||+++++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 275 (352)
T PF07690_consen 199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRR--- 275 (352)
T ss_dssp CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH---
Confidence 4667888888855555555543444455555555 4667777 333 46888999999999999999999876431
Q ss_pred hHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.........+..+...+... .++...++..++.|+++|..+......+.|.++.++.|+.+|+..+...+|..+ +|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~i-gP 352 (352)
T PF07690_consen 276 LLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGII-GP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 11111122222222111112 234556668888999999999999999999999999999999999998888763 54
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.5e-09 Score=106.15 Aligned_cols=170 Identities=11% Similarity=-0.009 Sum_probs=128.0
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
||+++.+.++......+....++.+..+.+.++. ....++..+...++.+.+|+++||++||+. +.+...+.
T Consensus 1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~------~~~~~~~~ 74 (365)
T TIGR00900 1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKV------MIGADLIR 74 (365)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHH------HHHHHHHH
Confidence 4666666666655555555666777788877754 358888999999999999999999998642 22223333
Q ss_pred HHHHHHHh-cc-----chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 331 AIGHIFLG-MG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 331 ~~~~lll~-~~-----~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
.++.++.. .. +...+++..++.|++.|...+...+++.|++..++.++.+|+...+..+|.. +++.+.|.+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~~~l~~ 153 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYI-VGPGIGGLMYA 153 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33222221 22 5566778889999999999999999999999999999999999999999987 58999999998
Q ss_pred hhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 405 HEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
..+ ++..|.+.+..++++.++...+
T Consensus 154 ~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 178 (365)
T TIGR00900 154 TLG----------------------------------IKWAIWVDAVGFAISALLIVSV 178 (365)
T ss_pred Hhh----------------------------------HHHHHHHHHHHHHHHHHHHHhc
Confidence 776 8889988877766665544433
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-08 Score=104.38 Aligned_cols=151 Identities=15% Similarity=0.136 Sum_probs=99.0
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.+|++.+|.+.+...+.......+....+.+.+ .+|.++.. ...+...+...+|+++.|+++||+++++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--- 275 (385)
T TIGR00710 199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLL--- 275 (385)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH---
Confidence 456778889998877766655544444445555555 56777543 477788899999999999999999875421
Q ss_pred HHHHHHHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVF 394 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~ 394 (484)
.+...++.++.+++.. .....++...++.|++++..+...+..+.|.++ ++.++..++.......++.+.
T Consensus 276 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~ 351 (385)
T TIGR00710 276 ---RMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIV 351 (385)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHH
Confidence 1222223333222211 112234455677899999999999899999886 678899998776654444444
Q ss_pred HHHHHHHH
Q 011516 395 SGLIASYI 402 (484)
Q Consensus 395 ~~~l~G~i 402 (484)
+ .+.|.+
T Consensus 352 ~-~~~~~~ 358 (385)
T TIGR00710 352 G-YLVSLI 358 (385)
T ss_pred H-HHHHhc
Confidence 4 455533
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.99 E-value=7e-09 Score=111.45 Aligned_cols=168 Identities=19% Similarity=0.278 Sum_probs=130.8
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHh---cCCChh--HHHHHHHHHhhhhcccccccchhh-hhhccCCchhHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNT--HIFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMAV 325 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~s---lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~~l~~ 325 (484)
.+|.+++..++-..+-.++..+++.+.++ +|.++. ...++.+++...++++.+|+++|| ++||+ .+.+
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~------~l~~ 84 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKK------TMVL 84 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHH------HHHH
Confidence 57888877777555555566778888765 677754 458999999999999999999999 78854 2345
Q ss_pred HHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccc---hhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 326 AQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK---FGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 326 ~~~l~~~~~lll~~~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~---~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
...+.+++++++... ++..++++.++.|++.|...+..+++++|.|..++ .++.+++.+.+..+|+. ++|.+.|+
T Consensus 85 ~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~-ig~~l~g~ 163 (475)
T TIGR00924 85 GGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSF-ISPLLAGV 163 (475)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHH-HHHHHHHH
Confidence 555666676666543 34456677788999999999999999999998654 78899999999999998 58999999
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
+.|..+ |+..|.+.+..++++.+..
T Consensus 164 l~~~~g----------------------------------~~~~f~~~~~~~~~~~l~~ 188 (475)
T TIGR00924 164 IAENYG----------------------------------YHVGFNLAAVGMVIGLLTF 188 (475)
T ss_pred HHHhcC----------------------------------hHHHHHHHHHHHHHHHHHH
Confidence 998664 9999999887666654443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.2e-09 Score=107.58 Aligned_cols=170 Identities=9% Similarity=0.106 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
.+|.+.+..++..........-++++.+++|.++.+ ..++++.+...++.+.+|+++||++||+ .+.....+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~ 83 (390)
T PRK03545 10 RVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK------LLIGLFVL 83 (390)
T ss_pred HHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH------HHHHHHHH
Confidence 455554444332222122223468888999988654 5888899999999999999999999964 23444555
Q ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 330 MAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 330 ~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
.+++.++.. ..+...+++..++.|++.|..++....++.|++..++.++..|+...+..+|.. ++|.+.+.+.+..+
T Consensus 84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~-ig~~l~~~l~~~~g- 161 (390)
T PRK03545 84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMV-LGLPLGRVIGQYLG- 161 (390)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHH-HHhhHHHHHHHHhc-
Confidence 555555544 456667778888999999988888889999999999999999999999999887 58889999887665
Q ss_pred hccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 409 KQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
||.+|.+.+.++++..++...
T Consensus 162 ---------------------------------w~~~f~~~~~~~~l~~~~~~~ 182 (390)
T PRK03545 162 ---------------------------------WRTTFLAIGGGALITLLLLIK 182 (390)
T ss_pred ---------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 899999999888776655444
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=101.66 Aligned_cols=169 Identities=22% Similarity=0.361 Sum_probs=131.0
Q ss_pred HHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~ 331 (484)
|.+....++............+.+.++.|.++. ....++..+...++.+.+|+++||++||+. +.+...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~------~~~~~~~~~ 75 (352)
T cd06174 2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV------LLLGLLLFA 75 (352)
T ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh------hHHHHHHHH
Confidence 555566655555555555666777788887764 357888999999999999999999988652 344445555
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhc
Q 011516 332 IGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410 (484)
Q Consensus 332 ~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~ 410 (484)
++.+++. .++...+++..++.|++.|..++..++++.|++..|+.++.+++......+|.. +++.+++.+.|..+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~--- 151 (352)
T cd06174 76 LGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGAL-LGPLLGGLLAESLG--- 151 (352)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHH-HHHHHHHHHHHHhh---
Confidence 5554443 355667788889999999999999999999999999999999999999999998 48899999998765
Q ss_pred cCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 411 HQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
++..|.+.+...+++.++...+
T Consensus 152 -------------------------------~~~~~~~~~~~~~~~~~~~~~~ 173 (352)
T cd06174 152 -------------------------------WRWLFLILAILGLLLALLLLFL 173 (352)
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888887777776655443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.9e-08 Score=104.57 Aligned_cols=155 Identities=9% Similarity=-0.030 Sum_probs=106.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCC--hh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYD--NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~--~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.++.+|++.+|+..+..++..+...+..++++++.++.+.. +. ....+.+-....+||+++|++.||+.+++
T Consensus 225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~---- 300 (410)
T TIGR00885 225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHK---- 300 (410)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHH----
Confidence 34578899999988888888777767777888888765432 22 23566666778899999999999986643
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
.+.+...+..+.+++....+........++.|++.+..|+..-++..+.+|.+.....-+++. +. +|+.+ .|++.
T Consensus 301 --~l~i~~~~~~~~~ll~~~~~~~~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~~-~Gga~-~p~l~ 375 (410)
T TIGR00885 301 --VLMAYAIIGMALCLGSIFAGGHVGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-AI-IGGGI-VPPLQ 375 (410)
T ss_pred --HHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HH-hccch-HHHHH
Confidence 123333333333333333333234556778889999999999999999999544333444444 33 78875 58999
Q ss_pred HHHHhhhh
Q 011516 400 SYIYDHEA 407 (484)
Q Consensus 400 G~iyD~~~ 407 (484)
|++.|..+
T Consensus 376 G~~~d~~~ 383 (410)
T TIGR00885 376 GFIIDMKE 383 (410)
T ss_pred HHHHHHhc
Confidence 99999765
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.3e-08 Score=104.13 Aligned_cols=163 Identities=15% Similarity=0.131 Sum_probs=102.8
Q ss_pred cchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc---cc-hh-H
Q 011516 272 DNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM---GW-PG-A 344 (484)
Q Consensus 272 ~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~---~~-~~-~ 344 (484)
+..+.+.++.|.+.. .......++.+.+|.+++|+++||++||+ .+.....+++++.+++.. .+ .. .
T Consensus 292 ~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~------~~i~~~~~~~v~~~~l~~~~~~~~~~~~ 365 (479)
T PRK10077 292 YYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKP------LQIIGALGMAIGMFSLGTAFYTQAPGIV 365 (479)
T ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChH------HHHHhHHHHHHHHHHHHHHHhcCcccHH
Confidence 345667778887643 34555788899999999999999998753 223334444444443321 11 11 2
Q ss_pred HHHHHHHHHHHhcccc-cchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcc
Q 011516 345 MYVGTLLIGLGYGAHW-AIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSI 423 (484)
Q Consensus 345 l~~~~~l~G~~~G~~~-~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~ 423 (484)
...+.++.+.+++..+ ++....++|.|+.++.++..|+......+|..+ ++.+++.+.|..- ..
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~-~~~~~p~~~~~~~-~~------------- 430 (479)
T PRK10077 366 ALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYF-VSWTFPMMDKNSW-LV------------- 430 (479)
T ss_pred HHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHH-HHHHhHHHHhccc-hh-------------
Confidence 3334455555665544 566789999999999999999998887777764 4455554432100 00
Q ss_pred cccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 424 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 424 ~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
..-.++.+|.+.+++++++.++..++..++|+
T Consensus 431 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 431 --------------AHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred --------------hhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 00125677888888888887776666555554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=107.37 Aligned_cols=157 Identities=11% Similarity=0.033 Sum_probs=121.5
Q ss_pred ccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccc
Q 011516 265 GSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGW 341 (484)
Q Consensus 265 g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~ 341 (484)
....++...+++|.++++.+.. +..++++.++..+|.+.+|+++||++||+. +.....+..++.++.. .++
T Consensus 30 ~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~------l~~~~~~~~~~~~~~~~a~~ 103 (413)
T PRK15403 30 LTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV------LITGALIFTLACAATLFTTS 103 (413)
T ss_pred HHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH------HHHHHHHHHHHHHHHHHcCC
Confidence 3455677788889999988764 458999999999999999999999998642 2333444444444443 455
Q ss_pred hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccC
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAG 421 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~ 421 (484)
...++++.++.|++.|........++.|.|+.++.++..++...+..+|.. ++|.+.|.+.|..+
T Consensus 104 ~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~lg~~l~~~~g-------------- 168 (413)
T PRK15403 104 MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI-IGPLSGAALMHFVH-------------- 168 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC--------------
Confidence 667888889999988876666778899999999999999999999889887 58888888876544
Q ss_pred cccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 422 ~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
||..|.+.++..+++.++..+
T Consensus 169 --------------------w~~~f~~~~~~~~i~~~~~~~ 189 (413)
T PRK15403 169 --------------------WKVLFAIIAVMGLIAFVGLLL 189 (413)
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887777655443
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.6e-09 Score=105.76 Aligned_cols=156 Identities=15% Similarity=0.210 Sum_probs=123.3
Q ss_pred cccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhH
Q 011516 268 LTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGA 344 (484)
Q Consensus 268 ~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~ 344 (484)
.++...++++.+++|.++. ....++..++..++++.+|+++||++||+ .+.....+..++.+++. ..+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~i~~~~~~~~~~~~~ 81 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKP------VILGGTLVFALAAVACALAQTIDQ 81 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChH------HHHHHHHHHHHHHHHHHHHccHHH
Confidence 3455677888999998865 35888999999999999999999998753 23334444444444433 345566
Q ss_pred HHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCccc
Q 011516 345 MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIF 424 (484)
Q Consensus 345 l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~ 424 (484)
+++..++.|++.|........++.|.+..++.++..++......+|.. +++.+.|.+.|..+
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~----------------- 143 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPL-LAPIIGGWLLVWFS----------------- 143 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcC-----------------
Confidence 778889999999999999999999999999999999999999988887 58899999998665
Q ss_pred ccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 425 TSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 425 ~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
|+..|.+.+.+++++.++..+..
T Consensus 144 -----------------~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 144 -----------------WHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 88999999888877766655443
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-08 Score=98.13 Aligned_cols=153 Identities=16% Similarity=0.121 Sum_probs=111.0
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh---cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s---lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
..++++.+|+..+.+++..|....+.+..+.+.++ +|.++. ...++.+..+-.+||++.+.+.||+++++.
T Consensus 135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~---- 210 (310)
T TIGR01272 135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY---- 210 (310)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH----
Confidence 36788999999999999888888877777777764 366653 458899999999999999999999987431
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
+.+...+.+++.+++...+.........++|++.+..++..-+...+.++ ++-++.-+++.+ ..+|+.+ .|.+.|
T Consensus 211 --l~~~~~l~~~~~~l~~~~~~~~~~~~~~l~g~~~s~i~P~~~s~a~~~~~-~~~~~asai~~~-~~~Gg~i-~P~l~G 285 (310)
T TIGR01272 211 --LAFNAFLAVLLSIGAALTHGYVAMWFVLALGLFNSIMFPTIFSLALNALG-RHTSQGSGILCL-AIVGGAI-VPLLQG 285 (310)
T ss_pred --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhHHHHHH-HHhcchH-HHHHHH
Confidence 12222233333333322222222346668899999999998888889898 667777777654 4577774 689999
Q ss_pred HHHhhhh
Q 011516 401 YIYDHEA 407 (484)
Q Consensus 401 ~iyD~~~ 407 (484)
.+.|..+
T Consensus 286 ~lad~~g 292 (310)
T TIGR01272 286 SLADCLG 292 (310)
T ss_pred HHHHhcc
Confidence 9999876
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=109.00 Aligned_cols=173 Identities=17% Similarity=0.231 Sum_probs=123.6
Q ss_pred HhhcH-HHHHHHHHHHHhhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhh-hhhccCCchhH
Q 011516 247 ALIKA-DFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 321 (484)
Q Consensus 247 ~l~~~-~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~ 321 (484)
.+++| .+|.++...++....-..+...+..+. +++|.++.. ..++.+........+++|+++|| ++||+
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~------ 89 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKR------ 89 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH------
Confidence 44666 599999888887766555656666666 678887653 34444554445555789999999 58854
Q ss_pred HHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcccccchhHHHHhhhCccc--hhhhhhHHhhhhhHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~~--~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~--~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.+...+..++.+++... ....++++.++.|++.|...+..+++++|.|..++ .+..+++.+++..+|+. ++|.
T Consensus 90 ~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~-~gp~ 168 (500)
T PRK09584 90 VIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSF-FSML 168 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHH-HHHH
Confidence 2344455555565555432 23345666788999999999999999999997543 45678988889999997 5899
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
+.|++.|..| |+..|.+.++..+++.+..
T Consensus 169 i~g~l~~~~g----------------------------------~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 169 ATPWLAAKYG----------------------------------WSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHhhC----------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 9999998765 9999999876666655443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=101.91 Aligned_cols=155 Identities=10% Similarity=-0.049 Sum_probs=111.4
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
.+++|++.|+...+..++............+.+.|. +|+++. ..+....+++..++.++.|.+.||+++|+
T Consensus 253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~------ 326 (495)
T PRK14995 253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRL------ 326 (495)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------
Confidence 457888888887776666554444444455666664 577764 34777788999999999999999998742
Q ss_pred HHHHHHHHHHHHHHHHh---c-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLG---M-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~---~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.....+.+++.+++. . .+....++..++.|++.|..+......+.+....++.+...++..+...+|.. +++.
T Consensus 327 ~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~-~G~a 405 (495)
T PRK14995 327 VATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAG-LGIA 405 (495)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHH-HHHH
Confidence 12333344444443322 1 22334566788899999988887778888889999999999999999888887 4888
Q ss_pred HHHHHHhhh
Q 011516 398 IASYIYDHE 406 (484)
Q Consensus 398 l~G~iyD~~ 406 (484)
+.|.+++..
T Consensus 406 i~g~i~~~~ 414 (495)
T PRK14995 406 IFGLLLSRS 414 (495)
T ss_pred HHHHHHHHH
Confidence 999998854
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.4e-08 Score=106.86 Aligned_cols=177 Identities=10% Similarity=0.070 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
.++++++.+++...-...+-.-.+.+.+++|.++.+ ...+++.++..++.+..|+++||++||+ .+.+..++
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~------~~~~~~~~ 82 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARR------WIAGIMVL 82 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHH------HHHHHHHH
Confidence 445555555543333333333334456788877654 5889999999999999999999999864 23444445
Q ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 330 MAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 330 ~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
..++.++.+ ..+...+++.-++.|++.|+.++....+++|+|..|+.++..|+...+..+|.. +++.+.+++.+..+-
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~~ 161 (412)
T TIGR02332 83 WGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMA-LGLILSGYILALDGL 161 (412)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCC
Confidence 555555444 355667888899999999999888888899999999999999999999999987 578899988764320
Q ss_pred hccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 409 KQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
.+..-||.+|.+.+..+++..++..+.
T Consensus 162 ----------------------------~~~~gwr~~f~~~~~~~l~~~~~~~~~ 188 (412)
T TIGR02332 162 ----------------------------MALKGWQWLFLLEGFPSVILGVMTWFW 188 (412)
T ss_pred ----------------------------CCccchhHHHHHHHHHHHHHHHHHhhc
Confidence 011139999999888877655544443
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.1e-09 Score=106.88 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=119.7
Q ss_pred ccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHH
Q 011516 271 IDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYV 347 (484)
Q Consensus 271 i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~ 347 (484)
....+++.+++|.++. ....++..+++.++.+.+|+++||++||+.+ .+...+.+++.+++. ..+...+++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTL------AVFIVIWGVFTGLQAFAGAYVSLYI 87 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceee------HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 3444566678888765 4588999999999999999999999986533 223333444443333 345667888
Q ss_pred HHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccC
Q 011516 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSM 427 (484)
Q Consensus 348 ~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~ 427 (484)
..++.|++.|..+...+.++.|++..|+.++..|+......+|.. +++.+.|.+.+..+
T Consensus 88 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~-------------------- 146 (399)
T TIGR00893 88 LRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGI-IGGPLVGWILIHFS-------------------- 146 (399)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHhCC--------------------
Confidence 889999999999999999999999999999999999999999987 47889998887654
Q ss_pred CCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 428 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 428 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
|+..|.+.+..+++..++...+.
T Consensus 147 --------------~~~~~~~~~~~~~~~~~~~~~~~ 169 (399)
T TIGR00893 147 --------------WQWAFIIEGVLGIIWGVLWLKFI 169 (399)
T ss_pred --------------chHHHHHHHHHHHHHHHHhhhee
Confidence 89999999888777666655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-07 Score=99.50 Aligned_cols=155 Identities=13% Similarity=0.068 Sum_probs=95.8
Q ss_pred HhhcHHHHHHHHHHHHhhcccc-ccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGL-TVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~-~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
..+++..|.......+....+. .+.+..+.+.++ +|.+..+ ....+.++++.+|++++|+++||++||+ ...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~----~~~ 308 (434)
T PRK15075 233 LAANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRP----VLI 308 (434)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----HHH
Confidence 3455566655443332222222 344456777765 6887543 3566788999999999999999998753 111
Q ss_pred HHHHHHHHHHHHHH--Hhcc--chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhh-hhhHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIF--LGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL-ANPAGSLVFSGL 397 (484)
Q Consensus 323 l~~~~~l~~~~~ll--l~~~--~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~-a~~vg~~l~~~~ 397 (484)
...........+. +... +...+.+...+.|+++|...+.....++|.+..+..|+..|+... +..+++. ++|.
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~-~~p~ 386 (434)
T PRK15075 309 -AFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGG-FTPA 386 (434)
T ss_pred -HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhh-hHHH
Confidence 1111111111111 1111 122233344566788887777777889999999999999998643 4444454 4789
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
+.|++.|..|
T Consensus 387 ~~g~i~~~~g 396 (434)
T PRK15075 387 ISTWLIHVTG 396 (434)
T ss_pred HHHHHHHhcC
Confidence 9999999886
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=104.37 Aligned_cols=172 Identities=11% Similarity=-0.007 Sum_probs=127.3
Q ss_pred cHHHHHHHHHHHHhhc----cccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 250 KADFWLIFFSLLLGSG----SGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g----~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
++++|++.+.+.+... ...++...++++.++++.++. ...++.+.++..++.+..|.++||++||+ .+
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l 81 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRP------VM 81 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HH
Confidence 3566766666665554 344555677888889998765 34788999999999999999999998854 12
Q ss_pred HHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 324 ~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.+...+..++.+++. ..+...+++..++.|++.|.........+.|.|..++.++..++......++.. ++|.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l 160 (406)
T PRK15402 82 LAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPL-LGPLVGAAL 160 (406)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 333344444444333 345556778889999999988888889999999988888888888777777765 588888888
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
.|..+ ||..|.+.+++++++.+....
T Consensus 161 ~~~~~----------------------------------w~~~~~~~~~~~~~~~~~~~~ 186 (406)
T PRK15402 161 IHVLP----------------------------------WRGMFVLFAALAALSFFGLWR 186 (406)
T ss_pred HHccC----------------------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 87544 889999988888776655433
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.9e-08 Score=104.39 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=122.8
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhHH--HHHHHH-HhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~--~VSl~s-i~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+.++.+|++.+|.+....++.......+....+++.+++|+++... ..++.+ +...+|.+..|++.||+++++..
T Consensus 200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-- 277 (390)
T TIGR02718 200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF-- 277 (390)
T ss_pred HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH--
Confidence 4678999999998887777665544445455667788899987643 445554 46678899999999999885421
Q ss_pred hHHHHHHHHHHHHH-HHHHh------ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCc-cchhhhhhHHhhhhhHHH
Q 011516 320 PVAMAVAQFVMAIG-HIFLG------MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLTLANPAGS 391 (484)
Q Consensus 320 ~~~l~~~~~l~~~~-~lll~------~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~-k~~g~~yG~~~~a~~vg~ 391 (484)
.+...+..+. .+.+. ......++...++.+++.|..+....+.+.+..+. ++.|+.+++......+|.
T Consensus 278 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~ 353 (390)
T TIGR02718 278 ----ILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGE 353 (390)
T ss_pred ----HHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHH
Confidence 1122212111 11111 11222334444555778888888887888888887 788999999999999998
Q ss_pred HHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 011516 392 LVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 459 (484)
Q Consensus 392 ~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 459 (484)
. ++|.++|.+||..| |+..|.+++++++++.++
T Consensus 354 ~-~g~~~~G~l~~~~G----------------------------------~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 354 L-IASSIAGYLTDRFG----------------------------------YAGGFLSGTVLAVLAILL 386 (390)
T ss_pred H-HHHHHHHHHHHHHc----------------------------------cHHHHHHHHHHHHHHHHH
Confidence 8 48999999999876 888999888777776554
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.4e-08 Score=103.96 Aligned_cols=175 Identities=13% Similarity=0.159 Sum_probs=151.5
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
....|.+.+.-|+.....++...-+++|++|+|.+..+ .++|+++.+-.+|-++...+.||+.||+ .+....
T Consensus 12 ~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~------lLl~~l 85 (394)
T COG2814 12 WLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRR------LLLGLL 85 (394)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHH------HHHHHH
Confidence 34667888888888888899999999999999998754 5999999999999999999999998854 345566
Q ss_pred HHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 328 FVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 328 ~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
.++.++.++.+. .+...+.++-++.|++-|..|++.-++++++-..++.++.-++++++..++.. +|.+++.++=|..
T Consensus 86 ~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v-~GvPLGt~ig~~~ 164 (394)
T COG2814 86 ALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATV-LGVPLGTFLGQLF 164 (394)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHH-HhccHHHHHHHHh
Confidence 667777776654 56678889999999999999999999999999999999999999999999886 6999999999999
Q ss_pred hhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 407 AEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
| ||.+|.+.+++++++.+.-....-
T Consensus 165 G----------------------------------WR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 G----------------------------------WRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred h----------------------------------HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8 999999999999887776655544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3e-08 Score=103.22 Aligned_cols=171 Identities=12% Similarity=0.158 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
+-+|..++.+++..+...++-..++++.+++|.++.+ ...++..++..+|.+.+|+++||++||+. +.....
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~------~~~~~~ 80 (394)
T PRK03699 7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ------LIFGFA 80 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH------HHHHHH
Confidence 5678877777777666555556678888999988653 47888999999999999999999998642 233444
Q ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 329 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 329 l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+.+++.++... ++...+++..++.|++.|..++.....+.|.|..|+.+...++......+|+.+ +|.+.+.+.+...
T Consensus 81 ~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~l~~~~~ 159 (394)
T PRK03699 81 LMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMI-FPIIAAYLLARSI 159 (394)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccc
Confidence 44455444443 445567778889999999999989999999999889999999988888888874 6788888775432
Q ss_pred hhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 408 EKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
-||..|.+.+.++++..++.+
T Consensus 160 ---------------------------------gw~~~f~~~~~~~~~~~~~~~ 180 (394)
T PRK03699 160 ---------------------------------EWYWVYACIGLVYVAIFILTL 180 (394)
T ss_pred ---------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 289999998887766555443
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.8e-08 Score=103.05 Aligned_cols=170 Identities=11% Similarity=0.123 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
..|++....++......++...++++.+++|.++.. ...+++.+...++.+.+|+++||++||+. +.+...+
T Consensus 9 ~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~------~~~~~~~ 82 (394)
T PRK11652 9 LLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV------ILVGMSI 82 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH------HHHHHHH
Confidence 344555555555555555666788899999988653 58889999999999999999999988542 2333344
Q ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 330 MAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 330 ~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
..++.++.. .++...+++..++.|++.|........++.|.+..++.+...++..++..++.. ++|.+.|.+.|..+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g- 160 (394)
T PRK11652 83 FILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPL-LAPLIGGLLTTLFG- 160 (394)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccC-
Confidence 444444433 344556778888999999887777778889999889999999999888888876 58889998887654
Q ss_pred hccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 409 KQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
||.+|.+.+..+++..++..+
T Consensus 161 ---------------------------------~~~~f~~~~~~~~~~~~~~~~ 181 (394)
T PRK11652 161 ---------------------------------WRACYLFLLLLGAGVTFSMAR 181 (394)
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHHH
Confidence 899999988776655544433
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-08 Score=105.18 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=114.0
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
+++||.++++.++......++...+..+.++++.++. ...++.+.+...+..+.+|+++||++||+.+ .+..
T Consensus 2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl------~~~~ 75 (393)
T PRK11195 2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVM------FIAN 75 (393)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhh------HHHH
Confidence 5789999999988776655666777778888887654 4577888999999999999999999997532 2333
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 328 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 328 ~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
.+..++.+++..... .++..++.|++.|...+..-+++.|+++.|+.++..|++.....+|.. ++|.++|.++|.
T Consensus 76 ~~~~~~~~~~~~~~~--~~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~-~Gp~lgG~l~~~ 150 (393)
T PRK11195 76 GIKLLGCLLMLFGIH--PLLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAIL-LGTVLGGALADP 150 (393)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 333333332222111 255667899999999999999999999999999999999999888876 599999999974
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.7e-09 Score=109.05 Aligned_cols=168 Identities=11% Similarity=0.195 Sum_probs=128.3
Q ss_pred HHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHH
Q 011516 256 IFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIG 333 (484)
Q Consensus 256 l~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~ 333 (484)
+.+..++......++...++++.+++|.+.. ....+.+.+++.++.+.+|+++||++||+ .+.+...+..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~~~~~~ 80 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRR------LFLISTFAFTLG 80 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHH------HHHHHHHHHHHH
Confidence 3344444333334444567888889998754 45888999999999999999999998854 234444555555
Q ss_pred HHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccC
Q 011516 334 HIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQ 412 (484)
Q Consensus 334 ~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~ 412 (484)
.++.. ..+...+++..++.|++.|...+....++.|.+..++.++.+++......+|.. +++.++|++.|..+
T Consensus 81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~~~~----- 154 (485)
T TIGR00711 81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPA-LGPTLGGWIIENYH----- 154 (485)
T ss_pred HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhh-hhhccHhHhccCcC-----
Confidence 55544 345567888889999999999999999999999999999999999999999887 58899999887554
Q ss_pred ccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 413 PHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
||..|.+.+.+++++.++..+..
T Consensus 155 -----------------------------w~~~f~~~~~~~~~~~~~~~~~~ 177 (485)
T TIGR00711 155 -----------------------------WRWIFLINVPIGIIVVVVAFFIL 177 (485)
T ss_pred -----------------------------ceehhhhhhHHHHHHHHHHHHHc
Confidence 78889988888777776655543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=103.84 Aligned_cols=159 Identities=12% Similarity=0.131 Sum_probs=122.3
Q ss_pred ccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccc
Q 011516 265 GSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGW 341 (484)
Q Consensus 265 g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~ 341 (484)
....++...++++.+++|.++.. ...+++.+...++.+..|+++||++||+ .+.+...+..++.+++. .++
T Consensus 17 ~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~------~l~~~~~~~~i~~~~~~~~~~ 90 (392)
T PRK10473 17 AGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKP------VAIPGAALFIIASLLCSLAET 90 (392)
T ss_pred HHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChH------HHHHHHHHHHHHHHHHHHhCc
Confidence 33345556788899999988753 4788889999999999999999998853 23334444455544443 344
Q ss_pred hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccC
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAG 421 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~ 421 (484)
...+++..++.|++.|..+.....++.|.+..|+.++..++......++.. ++|.+++.+.|..+
T Consensus 91 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~-~~~~i~~~l~~~~g-------------- 155 (392)
T PRK10473 91 SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPV-LAPVLGHLIMLKFP-------------- 155 (392)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcC--------------
Confidence 556677788899999998989999999999999999999999988888876 57888888776543
Q ss_pred cccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 422 ~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
|+..|.+.++++++..++..+..
T Consensus 156 --------------------~~~~~~~~~~~~~i~~~~~~~~~ 178 (392)
T PRK10473 156 --------------------WQSLFYTMAAMGILVLLLSLFIL 178 (392)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHc
Confidence 89999999988887777665544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-08 Score=103.51 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=123.2
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
+.+.+|.+.+.+++.......+.... +..++.|.++.+ ...++..++..++.+.+|+++||+++|+.+ .+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~------~~~ 97 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAM-PYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFL------PAG 97 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhh-HHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceeh------HHH
Confidence 55566666665555444433333333 444556877653 588899999999999999999999986422 233
Q ss_pred HHHHHHHHHHHhc-----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 327 QFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 327 ~~l~~~~~lll~~-----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
..+.+++.+++.. .+...+++..++.|++.|..++.....+.|+|..|+.|+..|+..++..+|+.+ ++.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~-~~~l~~~ 176 (438)
T TIGR00712 98 LILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGI-PPLLVLL 176 (438)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHH-HHHHHHH
Confidence 3344444433322 223345566778899999999888899999999999999999999998888874 5677776
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
..+.+. -||.+|++.+..+++..++..++.
T Consensus 177 ~~~~~~---------------------------------~w~~~f~~~~~~~~i~~~~~~~~~ 206 (438)
T TIGR00712 177 GMAWFN---------------------------------DWHAALYFPAICAIIVALFAFAMM 206 (438)
T ss_pred HHHHhh---------------------------------hhHHHHHHHHHHHHHHHHHHHHhc
Confidence 555432 199999999999888776665544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.7e-08 Score=101.30 Aligned_cols=173 Identities=14% Similarity=0.144 Sum_probs=128.0
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh-------HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT-------HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~-------~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+++++.+++..++......++..-++.+.+++|.+.. ....++..+...++.+.+|+++||++||+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------ 86 (408)
T PRK09874 13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM------ 86 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH------
Confidence 4577788777776655545566678888888887642 246778888999999999999999988532
Q ss_pred HHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 323 l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
+.....+.+++.+++. ..+...+++..++.|++.+ ........+.+.+..++.++..++...+..+|.. +++.+.|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~ 164 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGAL-LGPLAGGL 164 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 2333444444444443 3445567778888898755 4566667888999989999999999998888887 58899999
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
+.|..+ ++.+|.+.+.+++++.++..++.
T Consensus 165 l~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 193 (408)
T PRK09874 165 LADSYG----------------------------------LRPVFFITASVLFLCFLVTLFCI 193 (408)
T ss_pred HHHHhC----------------------------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 988664 89999999988877766655544
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=104.44 Aligned_cols=180 Identities=12% Similarity=0.006 Sum_probs=126.9
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+...++++|+.+++..++......+...-++.+.++++.++. ....+...+...++.+..|+++||++||+.+.....
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~ 90 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARG 90 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHH
Confidence 345578899988888666655544455556667778777654 458889999999999999999999998764322111
Q ss_pred HHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 323 l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
+. ......++...+. ..+...+++..++.|++.|...+.....+.|.+..++.++..++......+|.. +++.++|.
T Consensus 91 ~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~l~g~ 168 (417)
T PRK10489 91 TC-GLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV-ISPALGGL 168 (417)
T ss_pred HH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHH-hHHHHHHH
Confidence 11 1111111111111 233445667778889998887777778899999999999999999888888887 58999999
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
++|..+ ++..|.+.+.+++++.++.
T Consensus 169 l~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~ 193 (417)
T PRK10489 169 LIAAGG----------------------------------VAWNYGLAAAGTFITLLPL 193 (417)
T ss_pred HHHHHh----------------------------------hHHHHHHHHHHHHHHHHHH
Confidence 998765 7888888777666655443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.3e-08 Score=100.14 Aligned_cols=153 Identities=16% Similarity=0.205 Sum_probs=116.1
Q ss_pred cccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHH
Q 011516 270 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMY 346 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~ 346 (484)
...-.+++.+++|.++.+ ...+++.++..++.+.+|.++||++||+.+ .+...+.+++.++.. ..+...++
T Consensus 22 ~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 95 (377)
T TIGR00890 22 WTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA------MLGGILYGLGFTFYAIADSLAALY 95 (377)
T ss_pred hhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh------HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777888988653 589999999999999999999999996532 333444445554443 34455677
Q ss_pred HHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCccccc
Q 011516 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTS 426 (484)
Q Consensus 347 ~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~ 426 (484)
+...+.|++.|..+......+.+.|. |+.++..++...+..+|..+ .+++.+.+.|..+
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~------------------- 154 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFI-LSPLITSVINLEG------------------- 154 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhH-HHHHHHHHHhccc-------------------
Confidence 77889999999888877788889896 78999999999999999875 4567777766443
Q ss_pred CCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 427 MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 427 ~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
||..|.+.+.++++..++.+.+.
T Consensus 155 ---------------~~~~f~~~~~~~~~~~~~~~~~~ 177 (377)
T TIGR00890 155 ---------------VPAAFIYMGIIFLLVIVLGAFLI 177 (377)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHhe
Confidence 99999999998888777665543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=4e-08 Score=102.10 Aligned_cols=147 Identities=20% Similarity=0.165 Sum_probs=110.6
Q ss_pred hhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHH
Q 011516 274 LGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTL 350 (484)
Q Consensus 274 ~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~ 350 (484)
.+.+.+++|.++. ....+...++..+|.+..|+++||++||+.+ .+...+..++.++.. ..+...+.+..+
T Consensus 38 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (406)
T PRK11551 38 APRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL------IVSVALFGLFSLATAQAWDFPSLLVARL 111 (406)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3567788888765 3588889999999999999999999986432 222333333333332 355566778889
Q ss_pred HHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCC
Q 011516 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRV 430 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (484)
+.|++.|..++....++.|.|..|+.++..|+......+|.. +++.+.+.+.+..+
T Consensus 112 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~----------------------- 167 (406)
T PRK11551 112 LTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGA-LASVIGVLAAGDAA----------------------- 167 (406)
T ss_pred HHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccccC-----------------------
Confidence 999999999999999999999999999999999999989887 46777766654332
Q ss_pred CCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 431 DEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 431 ~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
|+..|.+.+.+.++..++..
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~~~ 187 (406)
T PRK11551 168 -----------WRHIFYVGGVGPLLLVPLLM 187 (406)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHH
Confidence 88999988766555544443
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-08 Score=102.37 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=115.7
Q ss_pred cccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhH
Q 011516 268 LTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGA 344 (484)
Q Consensus 268 ~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~ 344 (484)
..+..-.+.+.+++|.++. ....++..+...++.+..|+++||++||+. +.+...+..++.+++. ..+...
T Consensus 12 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~~ 85 (379)
T TIGR00881 12 KNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF------LPIGLILCAIVNLFFGFSTSLWV 85 (379)
T ss_pred HhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh------hHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333445667778888765 458899999999999999999999998642 3344444455554443 345556
Q ss_pred HHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH-HHHHHHhhhhhhccCccccccccCcc
Q 011516 345 MYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL-IASYIYDHEAEKQHQPHHHLLNAGSI 423 (484)
Q Consensus 345 l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~-l~G~iyD~~~~~~~~~~~~~~~~~~~ 423 (484)
+++..++.|++.|..++...++++|++..|+.++..++...+..+|..+ ++. +.+.+.+..+
T Consensus 86 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~---------------- 148 (379)
T TIGR00881 86 MAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGL-LPPLVLFGIAELYS---------------- 148 (379)
T ss_pred HHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHH-HHHHHHHHHHhcCC----------------
Confidence 7778889999999999999999999999999999999999999898875 663 4444443322
Q ss_pred cccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 424 FTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 424 ~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
++..|.+.+.++++..++.++..
T Consensus 149 ------------------~~~~~~~~~~~~~~~~~~~~~~~ 171 (379)
T TIGR00881 149 ------------------WHWVFIVPGIIAIIVSLICFLLL 171 (379)
T ss_pred ------------------chhHHHHHHHHHHHHHHHHheee
Confidence 78889888887777665555443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=98.83 Aligned_cols=143 Identities=17% Similarity=0.160 Sum_probs=90.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
..++.++++++|.+.+.+++..+....+.+..+++.++ +|.++. ..+.++..+.+.+||+++|+++||+++|+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-- 294 (366)
T TIGR00886 217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-- 294 (366)
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH--
Confidence 34668899999999988888777666666677777765 577654 3477888999999999999999999886422
Q ss_pred hHHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG 390 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg 390 (484)
.........+...+.+... +...++....+.++..|...+...+++.+++. ++.|+.+|++.....+|
T Consensus 295 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 295 --LMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred --HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 2222222222222222222 22222233333444444444445455666774 89999999987765544
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-08 Score=101.96 Aligned_cols=131 Identities=17% Similarity=0.157 Sum_probs=101.8
Q ss_pred cccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHH
Q 011516 270 VIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMY 346 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~ 346 (484)
+....+.+.+++|.++. ....++..++..++.+..|+++||++||+ .+.+...+..++.+++. ..+...++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (398)
T TIGR00895 36 MGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKR------VLLWSILLFSVFTLLCALATNVTQLL 109 (398)
T ss_pred HHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH------HHHHHHHHHHHHHHHHHHccchHHHH
Confidence 33445667778888764 34778888999999999999999998754 22333444444444433 34555677
Q ss_pred HHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 347 ~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+..++.|++.|..+....+.+.|.+..++.++..|+...+..+|.. +++.+.|.+.|..+
T Consensus 110 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~g 169 (398)
T TIGR00895 110 ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAA-VGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHH-HHHHHHHHHhhccc
Confidence 7889999999999999999999999999999999999999999987 57889999887654
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-08 Score=105.92 Aligned_cols=171 Identities=12% Similarity=0.080 Sum_probs=128.2
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCCh--hHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
+..+.+.+++...-...+...+++|.+++|.+. ....++.+.++...+.+.+|+++||++||+ .+.+...+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~------~l~~~~~~~ 81 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR------LLMLGGTLF 81 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHHHHHH
Confidence 344444444444444445455788999998765 356888999999999999999999999864 234444555
Q ss_pred HHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhh-CccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 331 AIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 331 ~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-G~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
.++.++.. ..+...++++-++.|++.|........++.+.| ..|+.++..|+......+|.. ++|.++|.+.|..+
T Consensus 82 ~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~-~gp~lgg~l~~~~g- 159 (495)
T PRK14995 82 GLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAA-FGPLVGGILLEHFY- 159 (495)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCC-
Confidence 55555444 456667888889999999987766666676777 678999999999999999987 58999999998765
Q ss_pred hccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 409 KQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
||..|++...++++..++..+..
T Consensus 160 ---------------------------------wr~~f~i~~~~~~~~~~l~~~~l 182 (495)
T PRK14995 160 ---------------------------------WGSVFLINVPIVLVVMGLTARYV 182 (495)
T ss_pred ---------------------------------hHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999888877776655543
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.3e-08 Score=104.60 Aligned_cols=150 Identities=10% Similarity=0.140 Sum_probs=111.5
Q ss_pred cchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHH
Q 011516 272 DNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 348 (484)
Q Consensus 272 ~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~ 348 (484)
...+++.+++|.+.. ....+++.+...++..++|+++||++||+. +.+...+..++.++.+. .+...+++.
T Consensus 40 ~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (455)
T TIGR00892 40 VFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV------VIAGGLLASLGMILASFSSNVIELYLT 113 (455)
T ss_pred hhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH------HHhhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 346777788888754 347778888888999999999999988642 23334444444444433 334445443
Q ss_pred -HHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccC
Q 011516 349 -TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSM 427 (484)
Q Consensus 349 -~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~ 427 (484)
.++.|++.|..+.....++.++|. |+.++..|+..++..+|.. ++|.+.|.+.|..+
T Consensus 114 ~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~-~~~~l~~~l~~~~g-------------------- 171 (455)
T TIGR00892 114 AGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLS-TLAPLNQYLFESFG-------------------- 171 (455)
T ss_pred HHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHH-HHHHHHHHHHHHhC--------------------
Confidence 367799998776666778899996 8899999999999999987 47889999998765
Q ss_pred CCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 428 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 428 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
||.+|++.+++++++.++.+++
T Consensus 172 --------------wr~~f~~~~~~~~~~~v~~~~~ 193 (455)
T TIGR00892 172 --------------WRGSFLILGGLLLHCCVCGALM 193 (455)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999888776554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-08 Score=98.93 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
.+...++.+++......++....+++.+++|.++.+ ...++..+...++.+..|+++||++||+. +.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~------~~~~~~~ 86 (405)
T TIGR00891 13 AFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLP------MVTSIVL 86 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHH
Confidence 344455555555444444555557777888887653 58889999999999999999999998642 2333444
Q ss_pred HHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 330 MAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 330 ~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
.+++.++.. ..+...+++..++.|++.|..+......+.|.+..++.++..|+..++..+|.. +++.+.+.+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 87 FSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV-VAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence 444444443 345667788889999999999999999999999999999999999999999987 47888888876543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-07 Score=109.73 Aligned_cols=154 Identities=16% Similarity=0.126 Sum_probs=110.3
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh---HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT---HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~---~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+++.++++.+|.+.+..++.......+...++.+.+ .+|.+.. ..+.++..++..+|.+++|+++||+++++.
T Consensus 225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~--- 301 (1146)
T PRK08633 225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL--- 301 (1146)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc---
Confidence 456788899998888777776666666666777765 4677654 357788889999999999999998876432
Q ss_pred hHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
+.+..++++++.+++. ..+...+.+..+++|++.|.......+++.+.+..++.|+.+++..+...+|..+ ++.+
T Consensus 302 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~-~~~~ 377 (1146)
T PRK08633 302 ---VPLGALGLALSLFLLPTAPSLASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLL-FLAL 377 (1146)
T ss_pred ---hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHH-HHHH
Confidence 2223333334443333 2344456677888999999988888899999999999999999999888888753 4444
Q ss_pred HHHHHhh
Q 011516 399 ASYIYDH 405 (484)
Q Consensus 399 ~G~iyD~ 405 (484)
. .+.+.
T Consensus 378 ~-~~l~~ 383 (1146)
T PRK08633 378 T-TLFSG 383 (1146)
T ss_pred H-HHHHH
Confidence 4 44443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-07 Score=95.82 Aligned_cols=179 Identities=11% Similarity=0.111 Sum_probs=122.2
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc----CCChh--HHHHHHHHHhhhhcccccccchhhhhhccC
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL----GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl----g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~ 316 (484)
+.++.+|++++|.+.+..++.........+..+.+.++. +.+.. ....++..+...++.+..|.+.||+++|+.
T Consensus 207 ~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~ 286 (396)
T TIGR00882 207 LALELFRQRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA 286 (396)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 457789999998876655443322222223344444443 22222 346777788899999999999999988642
Q ss_pred CchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhH-HhhhhhHHHHHH
Q 011516 317 YPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNF-LTLANPAGSLVF 394 (484)
Q Consensus 317 ~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~-~~~a~~vg~~l~ 394 (484)
+.+...+.+++..++. ..++..+++..++.|++++......-..+.+.++.+..++.++. ...+..+|+. +
T Consensus 287 ------l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~-~ 359 (396)
T TIGR00882 287 ------LLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMI-F 359 (396)
T ss_pred ------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHH-H
Confidence 2333444444444433 34555667777888888776665555667788888888887766 4566778887 4
Q ss_pred HHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 395 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 395 ~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
++.+.|+++|..| |+.+|.+.+++.++..+.+..
T Consensus 360 ~~~l~G~l~~~~G----------------------------------~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 360 LSTLAGNMYDSIG----------------------------------FQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHhHHHHHHhcc----------------------------------cHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999876 999999999988887776654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.6e-08 Score=100.55 Aligned_cols=159 Identities=11% Similarity=0.100 Sum_probs=120.6
Q ss_pred hccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-c
Q 011516 264 SGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-G 340 (484)
Q Consensus 264 ~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~ 340 (484)
..+..++...++++.+++|.++.. ...++..+...++.+.+|+++||++||+. +.....+..++.++... .
T Consensus 19 ~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~ 92 (401)
T PRK11043 19 FLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV------LLAGLSLFALGSLGMLWVE 92 (401)
T ss_pred HHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH------HHHHHHHHHHHHHHHHHhc
Confidence 334445556677788889887653 58889999999999999999999988642 23334444444444433 4
Q ss_pred chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccccc
Q 011516 341 WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNA 420 (484)
Q Consensus 341 ~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~ 420 (484)
+...+++..++.|++.|........++.|.|..++.+..++.......++.. ++|.+.|++.|..+
T Consensus 93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~i~~~l~~~~g------------- 158 (401)
T PRK11043 93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPA-LAPLLGAWLLNHFG------------- 158 (401)
T ss_pred CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCC-------------
Confidence 4556777788889988888888888999999988899999998888878876 57899999998765
Q ss_pred CcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 421 GSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 421 ~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
||..|.+.+.++++..++..++
T Consensus 159 ---------------------~~~~~~~~~~~~~~~~~~~~~~ 180 (401)
T PRK11043 159 ---------------------WQAIFATLFAITLLLILPTLRL 180 (401)
T ss_pred ---------------------hHHHHHHHHHHHHHHHHHHHHc
Confidence 8999999988887776655443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.7e-07 Score=96.70 Aligned_cols=156 Identities=14% Similarity=0.158 Sum_probs=107.7
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhh-HHHh-cCCCh-hHHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQS-LGYDN-THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~-i~~s-lg~~~-~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+++.++++.||.+.+..++........ +.... +.+. ++.+. ...+.++..++..++.+++|+++||+++|+.
T Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~---- 289 (437)
T TIGR00792 215 FKALFKNDQLLILCLAYLFYNLAFNIK-NGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKIL---- 289 (437)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHH-cchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH----
Confidence 466789999999887776654443322 22222 2222 23222 2345667789999999999999999987532
Q ss_pred HHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcccccchhHHHHhhh-------CccchhhhhhHHhhhhhHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLTLANPAGS 391 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-------G~k~~g~~yG~~~~a~~vg~ 391 (484)
+.+...+.+++.+++.. ++...+++..++.|++.|..+....++++|.. |.++.|..+|+..+...+|.
T Consensus 290 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~ 367 (437)
T TIGR00792 290 --FAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQ 367 (437)
T ss_pred --HHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHH
Confidence 22333344444443332 23334566778889999999999989988874 57788999999999998988
Q ss_pred HHHHHHHHHHHHhhhh
Q 011516 392 LVFSGLIASYIYDHEA 407 (484)
Q Consensus 392 ~l~~~~l~G~iyD~~~ 407 (484)
. +++.+.|.+.|..|
T Consensus 368 ~-lg~~i~g~ll~~~G 382 (437)
T TIGR00792 368 A-LAGFLVGLILGIIG 382 (437)
T ss_pred H-HHHHHHHHHHHHcC
Confidence 7 58899999999876
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=100.99 Aligned_cols=150 Identities=14% Similarity=0.091 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
.++..+++.++......+..+.++++.+++|.++. ...++.+.++..++.+.+|.+.||++||+. +.....+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~------l~~~~~~ 87 (402)
T TIGR00897 14 NLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT------MMIGLLL 87 (402)
T ss_pred hhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH------HHHHHHH
Confidence 34444444444333333444567788889988765 358899999999999999999999998642 2233333
Q ss_pred HHHHHHHH---hc--cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 330 MAIGHIFL---GM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 330 ~~~~~lll---~~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
.+++.+++ .. .+...+++..++.|++++.........+.+.+..|+.++..|+...+..+|..++++.+.|+++|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~ 167 (402)
T TIGR00897 88 WCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIP 167 (402)
T ss_pred HHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333221 22 34455667778889888877666667788999999999999999999888864468888889888
Q ss_pred hhh
Q 011516 405 HEA 407 (484)
Q Consensus 405 ~~~ 407 (484)
..|
T Consensus 168 ~~g 170 (402)
T TIGR00897 168 AFG 170 (402)
T ss_pred ccc
Confidence 765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.5e-08 Score=100.28 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=112.4
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhh-HHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~-i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+...+..+|.+++..++.....-++..-++. +.+++|.+... ..++...+...++++.+|+++||++||+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~------ 83 (392)
T PRK12382 10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS------ 83 (392)
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH------
Confidence 3457778888888877766554455555554 35688987654 59999999999999999999999998642
Q ss_pred HHHHHHHHHHHH---HHHhc------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 323 MAVAQFVMAIGH---IFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 323 l~~~~~l~~~~~---lll~~------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
+....++..++. .+... .+...+++..++.|++.+.......+.+.|.+..|+.++..|+..++...|..
T Consensus 84 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~- 162 (392)
T PRK12382 84 ALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALA- 162 (392)
T ss_pred HHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHH-
Confidence 122222222221 11111 23345777889999999988877778889999999999999999888877776
Q ss_pred HHHHHHHHHHhhhh
Q 011516 394 FSGLIASYIYDHEA 407 (484)
Q Consensus 394 ~~~~l~G~iyD~~~ 407 (484)
++|.++|.+++..+
T Consensus 163 ~g~~~~~~l~~~~g 176 (392)
T PRK12382 163 AGAPLGLLLHSHFG 176 (392)
T ss_pred HHHHHHHHHHhccC
Confidence 58889999887554
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.4e-08 Score=100.36 Aligned_cols=148 Identities=11% Similarity=0.144 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
+...++.+++....-.......+.+.+++|.++. ....++..++..+|.+.+|+++||++||+ .+.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~------~l~~~~~~~ 93 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP------LMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChH------HHHHHHHHH
Confidence 4444454544333333344555667778888764 35788899999999999999999998854 234455555
Q ss_pred HHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 331 AIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 331 ~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+++.++.. ..+...+++..++.|++.|..+.....++.|.+..|+.++..|+...+..+|..+ ++.+.+.+.|..+
T Consensus 94 ~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~-~~~l~~~l~~~~~ 170 (426)
T PRK12307 94 SVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNII-AAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHH-HHHHHHHHcccCC
Confidence 55555443 3455678888899999999999999999999999999999999999999898874 6777777765443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.1e-08 Score=97.52 Aligned_cols=145 Identities=16% Similarity=0.213 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHhhccccccccchhh-HHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~-i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
.||..++.+++......++..-.++ +.+++|.++.. ...++..+...++.+.+|+++||++||+ .+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 75 (366)
T TIGR00886 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRY------TTTLSLL 75 (366)
T ss_pred chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHH
Confidence 5889988888877777776666675 77889988754 5888999999999999999999998864 2344555
Q ss_pred HHHHHHHHHhc-c-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 329 VMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 329 l~~~~~lll~~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
++.++.+++.. . +...+++..++.|++.| .+.....+++|++..|+.++..++......+|.. +++.+.+.+.+
T Consensus 76 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~i~~~l~~ 151 (366)
T TIGR00886 76 LLAIPCLWAGLAVQSYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGG-VAQFVMPPIIG 151 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHH-HHHHHHHHHHH
Confidence 55666555443 4 55567778888999855 4566778899999999999999988865555554 24455544444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=8e-08 Score=102.66 Aligned_cols=150 Identities=15% Similarity=0.208 Sum_probs=116.2
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
..++.+++.+++......+....++++.+++|.++. ...++++.+...++.+..|+++||++||+ .+.+...
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~------~~~~~~~ 93 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRL------AMVISIV 93 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHH
Confidence 466677777766555555555566778888998864 35888899999999999999999998854 2334444
Q ss_pred HHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 329 VMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 329 l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+.+++.+++.. .+...+++..++.|++.|..++....++.|.|..|+.++..++...+..+|.. +++.+.+.+.+..+
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~ 172 (496)
T PRK03893 94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAV-VAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC
Confidence 44555544433 45556788889999999999999999999999999999999999999999987 58899998887544
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=98.84 Aligned_cols=171 Identities=15% Similarity=0.189 Sum_probs=125.3
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
|-++ |.++++.++......++..-++... +++|.+... ...++..+...+.++++|.++||+++|+ .+..
T Consensus 9 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~------~l~~ 81 (400)
T PRK11646 9 NLGK-YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKP------MIVT 81 (400)
T ss_pred cccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchH------HHHH
Confidence 3445 5555555555555555555555544 677887653 4777788888888999999999998854 2344
Q ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 326 AQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 326 ~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
...+..++.+++. .++...+++..++.|++.|.......+++.|.+..++.++.+|+......+|.. ++|.++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~-ig~~l~g~l~- 159 (400)
T PRK11646 82 GMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAV-IGALLGSWLL- 159 (400)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-
Confidence 4445555554443 345566778888899998877777888899999999999999999999999987 5899999998
Q ss_pred hhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 405 HEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
..+ |+..|.+.+..++++.++..+
T Consensus 160 ~~g----------------------------------~~~~f~~~~~~~~~~~i~~~~ 183 (400)
T PRK11646 160 QYD----------------------------------FRLVCATGAVLFVLAAAFNAW 183 (400)
T ss_pred Hhh----------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 334 889999988887776655443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=101.87 Aligned_cols=150 Identities=20% Similarity=0.324 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhh-hhccCCchhHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPRPVAMAVA 326 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~-~~~~~~~r~~~l~~~ 326 (484)
+.+|.++...+.-..+-.++..-++.+.+ .+|+++.+ ...+.+.+...++.+.+|+++||+ +||+ .+.+.
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr------~iliG 82 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRM------AVMLG 82 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHH------HHHHH
Confidence 35666666555544444444455555554 56887643 477888888999999999999998 8854 23455
Q ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcccccchhHHHHhhhCcc--chhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 327 QFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK--KFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 327 ~~l~~~~~lll~~~--~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k--~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.+++.++++++... ++..+++...+++++.|...+..+++++|.|..+ ...+.+++.+....+|+. ++|.+.|++
T Consensus 83 ~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~-iap~l~g~L 161 (493)
T PRK15462 83 ALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSI-IAPIACGYA 161 (493)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHH-HHHHHHHHH
Confidence 55666666655432 2234555666777888888888889999999865 577888888888888887 589999999
Q ss_pred Hhhhh
Q 011516 403 YDHEA 407 (484)
Q Consensus 403 yD~~~ 407 (484)
.+..|
T Consensus 162 ~~~~G 166 (493)
T PRK15462 162 QEEYS 166 (493)
T ss_pred HhhhC
Confidence 87655
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.6e-07 Score=94.75 Aligned_cols=155 Identities=9% Similarity=-0.046 Sum_probs=97.0
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh---cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS---LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s---lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
++.+|++.||.+.+..++.......+....+++... .+.+.. ....++.++.....+...|.+.||.++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~---- 275 (395)
T PRK10054 200 SVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRP---- 275 (395)
T ss_pred hhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchh----
Confidence 557889999988877776554433333344444432 233222 23455555555555666666777665432
Q ss_pred hHHHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.....+..++.+.+.. ++...+.+..++.|++++...+.....+.+.-..+..|+.+|.... ..+|.. ++|.
T Consensus 276 --~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~-~~~G~~-~Gp~ 351 (395)
T PRK10054 276 --LMTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSL-GWLGAA-INPL 351 (395)
T ss_pred --HHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcccceehHhHHHH-HHHHHH-HHHH
Confidence 223334444555544432 3333455677888888887777777788888888888988886553 336776 5899
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
++|+++|+.|
T Consensus 352 ~~G~l~~~~g 361 (395)
T PRK10054 352 VSGVILTTLP 361 (395)
T ss_pred HHHHHHHHcC
Confidence 9999999887
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=101.38 Aligned_cols=180 Identities=13% Similarity=0.069 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHhhccc----cccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 251 ADFWLIFFSLLLGSGSG----LTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g----~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
+.+|..+...+++.... ..+-.-.+++.+++|.++.+ ...+.+.+...++.+..|+++||+++|+.+....+ .
T Consensus 25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~-~ 103 (467)
T PRK09556 25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLI-L 103 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHH-H
Confidence 34665555555544432 22223356778889987654 58889999999999999999999998753321111 1
Q ss_pred HHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 325 ~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
.......++.++.. ..+...+++.-++.|++.|..++....+++|+|..++.|+..|+...+..+|..+ ++.+..++.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l-~~~i~~~~~ 182 (467)
T PRK09556 104 SAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAG-AGGVALWGA 182 (467)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhH-HHHHHHHHH
Confidence 11111222222211 2445567778889999999999999999999999999999999999999999875 667776665
Q ss_pred hhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 404 DHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 404 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
+..-. ..++..|.+.+.++++..++.+.+
T Consensus 183 ~~~~~-------------------------------~~~~~~f~~~g~~~~~~~i~~~~~ 211 (467)
T PRK09556 183 NYFFD-------------------------------GHVIGMFIFPSIIALIIGFIGLRY 211 (467)
T ss_pred Hhhcc-------------------------------CcchhHHHHHHHHHHHHHHHHHHh
Confidence 44210 136778888777766655554433
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-07 Score=97.28 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=115.5
Q ss_pred hhcHHHHHHHHHHHHhhcccccc----ccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTV----IDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~----i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
+|+.+ |.++...++......+. ..-.+.+.++ |.++.+ ...+...++..++.+.+|+++||+++|+
T Consensus 23 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~------ 94 (452)
T PRK11273 23 YRRLR-WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------ 94 (452)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch------
Confidence 34433 66555555543332222 1223444444 777653 4889999999999999999999999864
Q ss_pred HHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.+.+..++.+++.+++.. .+...+++..++.|++.|..++....++.|+|..|+.++..|+...+..+|..+.++
T Consensus 95 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 174 (452)
T PRK11273 95 FLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPL 174 (452)
T ss_pred hHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHH
Confidence 233344444444444332 133345666788899999888877788999999999999999998888888654454
Q ss_pred HHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 397 LIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 397 ~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
.+.+.+....+ ||..|++.+.++++..++.++..
T Consensus 175 l~~~~~~~~~g----------------------------------w~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 175 LFLLGMAWFND----------------------------------WHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHHHhcc----------------------------------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33222222112 89999999888777666655544
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=100.83 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=110.9
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
...++++||.+++.+++...+-..+...++.+.++ +|.+..+ ..+++..+...++++.+|+++||+++|+.+ .
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~----~ 80 (420)
T PRK09528 5 YYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL----L 80 (420)
T ss_pred hhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH----H
Confidence 35788999999988888776554555666666665 7888754 599999999999999999999999985422 1
Q ss_pred HHHHHHHHHHHHHH-Hhccc----h--hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 323 MAVAQFVMAIGHIF-LGMGW----P--GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 323 l~~~~~l~~~~~ll-l~~~~----~--~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
............+. +.... . ....+..+..|.++..........+.+ + .++.+..||.......+|.. ++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~-i~ 157 (420)
T PRK09528 81 WIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWA-LC 157 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHH-HH
Confidence 11111111111111 11100 0 011223333444444444444444433 3 35678888888888888887 47
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
+.++|.++|. + ++..|++.+++++++.++.+.+
T Consensus 158 ~~~~g~l~~~-~----------------------------------~~~~f~~~~~~~~~~~~~~~~~ 190 (420)
T PRK09528 158 AFIAGILFNI-N----------------------------------PQINFWLGSGSALILLVLLFFA 190 (420)
T ss_pred HHHHHHHHhc-C----------------------------------chHhHHHHHHHHHHHHHHHhcc
Confidence 8999999874 2 5678888887777766555443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.9e-07 Score=91.44 Aligned_cols=150 Identities=13% Similarity=0.137 Sum_probs=82.7
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
++.++++.+|...+...+.......+.+..+.+. +++|.++. ....+..++.+.+|++..|++.||+++|+ .
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~----~- 271 (392)
T PRK10473 197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRT----L- 271 (392)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH----H-
Confidence 3567788888766665554444334433334444 45687764 34777889999999999999999998753 1
Q ss_pred HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCc-cchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~-k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+.+...+..++.+++.. .......+...+.+.++|..++.. ...++... ++-|...++. .++.. .++.++
T Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~----~~~~~-~g~~~~ 343 (392)
T PRK10473 272 -MLTSQVLFLAAGITLALSPSHAVSLFGITLICAGFSVGFGVA--MSQALGPFSLRAGVASSTL----GIAQV-CGSSLW 343 (392)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHhccCcccccHHHHHH----HHHHH-HHHHHH
Confidence 23333333444433332 222233444455555555444332 22233332 3334444443 34433 356677
Q ss_pred HHHHhhhh
Q 011516 400 SYIYDHEA 407 (484)
Q Consensus 400 G~iyD~~~ 407 (484)
|.+.|..|
T Consensus 344 ~~l~~~~g 351 (392)
T PRK10473 344 IWLAAVLG 351 (392)
T ss_pred HHHHHHhc
Confidence 77887765
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-07 Score=100.73 Aligned_cols=150 Identities=22% Similarity=0.300 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHH-HhcCCChh--HHHHHHHHHhhhhcccccccchhh-hhhccCCchhHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPVAMAVA 326 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~~l~~~ 326 (484)
+.+|+++...++--.+-..+...+..+. +++|.++. ...++.+.....+.-+++|+++|| +|||+. +.+.
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~------~~~g 87 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT------IVLG 87 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH------HHHH
Confidence 4577777766655444444444454444 56888764 346677777778888899999999 898652 3455
Q ss_pred HHHHHHHHHHHhcc--chhHHHHHHHHHHHHhcccccchhHHHHhhhCcc--chhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 327 QFVMAIGHIFLGMG--WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK--KFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 327 ~~l~~~~~lll~~~--~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k--~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
.+++.++.+++... .+..++++-++.|++.|...+..+++++|.|..+ +.+..|++.+++..+|+. ++|.+.|++
T Consensus 88 ~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~-~g~~l~g~l 166 (489)
T PRK10207 88 AIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSL-ISLSLAPVI 166 (489)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHH-HHHHHHHHH
Confidence 55666666554432 2334557788899999999999999999999766 347789999999999998 588999999
Q ss_pred Hhhhh
Q 011516 403 YDHEA 407 (484)
Q Consensus 403 yD~~~ 407 (484)
-|..|
T Consensus 167 ~~~~g 171 (489)
T PRK10207 167 ADKFG 171 (489)
T ss_pred HHhhC
Confidence 87654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.6e-07 Score=93.04 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=101.2
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
.++.+|++++|...+.+.+....-..+.+..+.+.++.|+++.. .......++..+|++..+++.||+++++.. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~-~-- 272 (401)
T PRK11043 196 FKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLL-P-- 272 (401)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH-H--
Confidence 45678888998877666655544445555566777778887643 344556677888999999999998775422 1
Q ss_pred HHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
...+...+..+..+++.. .....+.+...+.|+++|..+........+.+. ++.|+..|+..+....++. .++.+
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~-~~~~~ 350 (401)
T PRK11043 273 WLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCF-LASLL 350 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHH-HHHHH
Confidence 112222222222222221 222334455677788888888777777777775 6889999999887666665 46778
Q ss_pred HHHHHhh
Q 011516 399 ASYIYDH 405 (484)
Q Consensus 399 ~G~iyD~ 405 (484)
.|.+.|.
T Consensus 351 ~g~l~~~ 357 (401)
T PRK11043 351 VSALIST 357 (401)
T ss_pred HHHccCC
Confidence 8888764
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.2e-07 Score=94.43 Aligned_cols=155 Identities=9% Similarity=0.102 Sum_probs=105.1
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHH-H-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-Q-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.++.++++.||...+..++..+......+..+.+. + .+|.++. ....+.+.++..+||+..|++.||+++++.
T Consensus 251 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~--- 327 (438)
T PRK10133 251 LSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV--- 327 (438)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH---
Confidence 35678999999887777666555443334444443 4 4577764 458889999999999999999999987542
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+.....+.++++++....+....+....+.|++.|..++..-+...+.+| |+-++.-+++.+.. +|..+ .|.+.
T Consensus 328 ---l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glg~~~i~P~~~s~a~~~~~-~~~~~as~l~~~~~-~g~~~-~~~i~ 401 (438)
T PRK10133 328 ---LAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLG-QDTKYGSSFIVMTI-IGGGI-VTPVM 401 (438)
T ss_pred ---HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhccchhHHhHHh-ccchH-HHHHH
Confidence 12222222222222222111123456778999999999999999999998 56777777776544 55554 57899
Q ss_pred HHHHhhhh
Q 011516 400 SYIYDHEA 407 (484)
Q Consensus 400 G~iyD~~~ 407 (484)
|.+.|..|
T Consensus 402 G~l~~~~g 409 (438)
T PRK10133 402 GFVSDAAG 409 (438)
T ss_pred HHHHHhcc
Confidence 99999765
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-07 Score=97.42 Aligned_cols=150 Identities=12% Similarity=0.051 Sum_probs=111.5
Q ss_pred cchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHH
Q 011516 272 DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVG 348 (484)
Q Consensus 272 ~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~ 348 (484)
.-++++.+++|.++.+ ...+.+.+...++.+..|+++||++||+. +.........+.+.... .+...+++.
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~------~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF------LFGSLATFAAAAGRLLDPFNYEWLLAC 85 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH------HHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 4457788899988654 48888999999999999999999987531 12222222222222222 456678889
Q ss_pred HHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCC
Q 011516 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMP 428 (484)
Q Consensus 349 ~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~ 428 (484)
-++.|++.|.... ....++|.|..|+.++..++...+.++|..+ ++.+.+.+.+..+
T Consensus 86 R~l~G~g~~~~~~-~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l-~~~~~~~l~~~~g--------------------- 142 (368)
T TIGR00903 86 QLLAALGQPFLLN-AFAPAASQIREERRDLVISLLSFAMYLGIIF-ALAAGLKIYTAGG--------------------- 142 (368)
T ss_pred HHHHHhHhHHHHH-HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHccc---------------------
Confidence 9999999986543 3345589999999999999999999999984 7888888876544
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 429 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 429 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
||..|++.+.++++..++..+.
T Consensus 143 -------------Wr~~f~~~~~l~~~~~~~~~~~ 164 (368)
T TIGR00903 143 -------------LQLLIIPIAAVAAAGIILVLAA 164 (368)
T ss_pred -------------hHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888876665543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.4e-07 Score=94.73 Aligned_cols=148 Identities=15% Similarity=0.237 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHhhcccccc---ccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTV---IDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~---i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
+.-|++...++.+.....++ -.-++++.+++|.++.+ ..++++.++..++-+..|+++||++||+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~------~l~~ 79 (393)
T PRK09705 6 PLNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERR------SVAI 79 (393)
T ss_pred chHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchH------HHHH
Confidence 34577766666665555332 22356677788887653 5888999999999999999999999964 3455
Q ss_pred HHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 326 AQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 326 ~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
...+.+++.++.+ .++...+++..++.|++.|......+.++.+.|. ++.+...|+...+..+|.. +++.+.+.+.+
T Consensus 80 ~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~-~g~~~~~~l~~ 157 (393)
T PRK09705 80 SLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGG-LGAAITPWLVQ 157 (393)
T ss_pred HHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 6666667766655 4556678889999999999999999999999996 8889999999888877776 47778888776
Q ss_pred hh
Q 011516 405 HE 406 (484)
Q Consensus 405 ~~ 406 (484)
..
T Consensus 158 ~~ 159 (393)
T PRK09705 158 HS 159 (393)
T ss_pred hc
Confidence 54
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.68 E-value=4.4e-07 Score=92.67 Aligned_cols=138 Identities=14% Similarity=0.092 Sum_probs=93.0
Q ss_pred HHHHhhcHH---HHHHHHHHHHhhccccccccchhhHHHhcCCChhHH--HHHHHH-HhhhhcccccccchhhhhhccCC
Q 011516 244 LTQALIKAD---FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI--FVSMIS-IWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 244 ~~~~l~~~~---FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~--~VSl~s-i~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
.++.++++. +|.+.+..++............+.+.+++|+++... ..++.+ +...+|.+++|++.||+++|+..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l 278 (356)
T TIGR00901 199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYAL 278 (356)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 344556654 777766666555444455566777778888877543 444444 56789999999999999886431
Q ss_pred chhHHHHHHHHHHHHHHHHH---hc---------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhh
Q 011516 318 PRPVAMAVAQFVMAIGHIFL---GM---------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL 385 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll---~~---------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~ 385 (484)
....++.+++..++ .. ++...+....++.++++|..++...+++.|.+..++.|+.+|+.+.
T Consensus 279 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~ 352 (356)
T TIGR00901 279 ------LLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSS 352 (356)
T ss_pred ------HHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 22222223332221 11 1223355566677999999999999999999999999999999876
Q ss_pred hh
Q 011516 386 AN 387 (484)
Q Consensus 386 a~ 387 (484)
..
T Consensus 353 ~~ 354 (356)
T TIGR00901 353 LS 354 (356)
T ss_pred HH
Confidence 54
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=97.44 Aligned_cols=172 Identities=16% Similarity=0.145 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
||+||.+....++....--.+...++.+.+ ++|.++.+ ..+++..+...++++.+|+++||++||+.+... .+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~---~~~ 77 (396)
T TIGR00882 1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWI---ISG 77 (396)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH---HHH
Confidence 689999988887777765556566666665 46887654 599999999999999999999999986532111 111
Q ss_pred HHHHHHHHHHHhccc------hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 327 QFVMAIGHIFLGMGW------PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 327 ~~l~~~~~lll~~~~------~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
..+.....+.+...+ ...+.+..++.|++++...+.....+.+. .|+.+.+||.......+|.. +++.++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~g~~-~g~~~~g 154 (396)
T TIGR00882 78 LLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKV--SRNSNFEYGKARMFGCVGWA-LCASIAG 154 (396)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHh--hhhcccccchhhhhcccHHH-HHHHHHh
Confidence 111111111111111 11234456777888888888877777664 24556678887777778876 5888888
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
.++|. + ++..|.+.+.++++..++.+.
T Consensus 155 ~l~~~-~----------------------------------~~~~f~~~~~~~~~~~~~~~~ 181 (396)
T TIGR00882 155 ILFSI-D----------------------------------PQIVFWLGSGFALILMLLLMF 181 (396)
T ss_pred hhhcc-C----------------------------------chHHHHHHHHHHHHHHHHHHH
Confidence 88763 2 778999988888777665543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-07 Score=81.72 Aligned_cols=132 Identities=12% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHh
Q 011516 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASE 369 (484)
Q Consensus 291 Sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se 369 (484)
+..++.+.++.+..|++.||++||+. +.....+..++.+++. ..+...+.+..++.|++.|.........+.|
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPV------LLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHH------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677888999999999999987542 2333333444443333 3445567778899999999999999999999
Q ss_pred hhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHH
Q 011516 370 LFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIM 449 (484)
Q Consensus 370 ~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~ 449 (484)
.+..++.++.+++......+|.. +++.+.|.+.|..+ |+..|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 123 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPL-LGPPLGGVLAQFLG----------------------------------WRAPFLFL 123 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHH-HhHHhHHHHhcccc----------------------------------hHHHHHHH
Confidence 99999999999999999999987 57899999886543 78889988
Q ss_pred HHHHHHHHHHHHHh
Q 011516 450 SGLCIVAVILSMIL 463 (484)
Q Consensus 450 ~~~~~~~~~l~~~l 463 (484)
+..++++.+....+
T Consensus 124 ~~~~~~~~~~~~~~ 137 (141)
T TIGR00880 124 AILALAAFILLAFL 137 (141)
T ss_pred HHHHHHHHHHHhhc
Confidence 88877776665543
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1e-06 Score=90.47 Aligned_cols=144 Identities=10% Similarity=0.006 Sum_probs=81.3
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.++++.+|...+..++.......+....+.+..+ .|.++. ....++.+++..++++..|++.||+++|+..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~--- 263 (377)
T PRK11102 187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML--- 263 (377)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH---
Confidence 3456788888877666665554444455555555544 577654 3477888999999999999999999885421
Q ss_pred HHHH-HHHHHHHHHHHHHh-cc-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhh-hhHHHH
Q 011516 321 VAMA-VAQFVMAIGHIFLG-MG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA-NPAGSL 392 (484)
Q Consensus 321 ~~l~-~~~~l~~~~~lll~-~~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a-~~vg~~ 392 (484)
.+. ....+..+..+... .+ ....+.+...+.+.+.+......-..+.|.+. ++.|+..++.... ..+|+.
T Consensus 264 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~ 337 (377)
T PRK11102 264 -RFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAI 337 (377)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHH
Confidence 111 11111222222111 11 12223333444444444444444455677776 7778887776543 334443
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.6e-07 Score=95.85 Aligned_cols=186 Identities=18% Similarity=0.213 Sum_probs=141.4
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
.++++.-|.++.+...+++++..-...+++...+-+++ .+|.++.+. +.-+..+.+++|-+++|++.||++.|.+
T Consensus 272 ~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~-- 349 (477)
T PF11700_consen 272 RTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTK-- 349 (477)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchh--
Confidence 36788888899999888888766555555555555554 689887653 5567788899999999999999988632
Q ss_pred hhHHHHHHHHHHHHHHHHHh--------ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLG--------MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG 390 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~--------~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg 390 (484)
|.. +........+....+. ..++..+|+..+++|++.|+..+..-++.+|+=...+-+.-||+-.+..-..
T Consensus 350 ~~l-~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~s 428 (477)
T PF11700_consen 350 RTL-LISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKAS 428 (477)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 222 2222222122222221 4556779999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 391 SLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 391 ~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
+. +||.++|.+-|.++ ..|..|.....+.++|.++-..+.
T Consensus 429 s~-lGPll~g~i~~~tg---------------------------------~~r~g~~~l~~lf~~gl~ll~~v~ 468 (477)
T PF11700_consen 429 SW-LGPLLFGLITDATG---------------------------------SQRYGFLFLLVLFLIGLILLFFVD 468 (477)
T ss_pred HH-HHHHHHHHHHHHhC---------------------------------CchhHHHHHHHHHHHHHHHHhhcc
Confidence 87 59999999999997 278889988888888887665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-06 Score=94.37 Aligned_cols=200 Identities=14% Similarity=0.155 Sum_probs=136.7
Q ss_pred CCCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCCh--hHHHHHHHHHhhhhcccccccchhhhhhccC
Q 011516 240 EDFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDN--THIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (484)
Q Consensus 240 ~~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~ 316 (484)
.+.+.+++++++.+|.+|++.++....-.+++...+.+.++ +|++- ...+.++=-+..++-++++|.++|++.+| .
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~ 325 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I 325 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence 57799999999999999999999988888888888888865 57764 45677788888999999999999999775 4
Q ss_pred Cc----hhHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHH
Q 011516 317 YP----RPVAMAVAQFVMAIGHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG 390 (484)
Q Consensus 317 ~~----r~~~l~~~~~l~~~~~lll~~~~--~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg 390 (484)
++ |-.+-.+++...++.++.+...+ ...+.+....++.+..+............-.++|-+...|+......++
T Consensus 326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~ 405 (466)
T KOG2532|consen 326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA 405 (466)
T ss_pred CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence 33 33344555555555555444322 2212222222333333333333233333337899999999999999898
Q ss_pred HHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011516 391 SLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 470 (484)
Q Consensus 391 ~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~ 470 (484)
++ ++|.+.|.+-. +..+ +=++..|++.+++.+++.+.-.+.-.-++.-
T Consensus 406 ~~-~~P~~vg~~~~-~~t~------------------------------~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~ 453 (466)
T KOG2532|consen 406 GF-IAPLLVGIIVT-DNTR------------------------------EEWRIVFLIAAGILIVGNIIFLFFGSGEPAP 453 (466)
T ss_pred HH-HHHHheeeEeC-CCCH------------------------------HHHHHHHHHHHHHHHHhchheeEeecCcccC
Confidence 87 58999988873 2111 1299999999999999885554443334444
Q ss_pred hh
Q 011516 471 YS 472 (484)
Q Consensus 471 ~~ 472 (484)
+.
T Consensus 454 w~ 455 (466)
T KOG2532|consen 454 WT 455 (466)
T ss_pred cc
Confidence 43
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.7e-07 Score=100.32 Aligned_cols=169 Identities=13% Similarity=0.170 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhhccccccccch--hhHHHhcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNL--GQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~--~~i~~slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
++|.+..++++....|.++..++ +++.+++|++..+. ..++ +..-..+.+.+|+++||+++|+ .+.+..
T Consensus 26 Rw~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R~------vllig~ 98 (591)
T PTZ00207 26 RFALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPRP------IFVLSM 98 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHH------HHHHHH
Confidence 45666666666666666665554 67777889887543 2233 2222345567899999998853 345566
Q ss_pred HHHHHHHHHHhc-------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 328 FVMAIGHIFLGM-------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 328 ~l~~~~~lll~~-------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
++..++.++++. .+...+++..++.|++-|..+......+.++|. ++.|...|+...+.++|+.++++...+
T Consensus 99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~ 177 (591)
T PTZ00207 99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA 177 (591)
T ss_pred HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777666543 244567778888999988888888889999995 889999999999999999877654444
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
++. ++ ++..|++.+.+.++..++++.+.
T Consensus 178 -l~~-~~----------------------------------~~~~fl~l~vl~~vv~ll~~~~v 205 (591)
T PTZ00207 178 -FFS-DN----------------------------------TSAYFFFLMSFALVVGILAIVFM 205 (591)
T ss_pred -HHH-Hh----------------------------------HHHHHHHHHHHHHHHHHHHHhhe
Confidence 442 11 56678888877777666666543
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=90.27 Aligned_cols=184 Identities=15% Similarity=0.228 Sum_probs=139.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+..+.+|+|.-|..++..++..+...+....+.++.++. |.+.. +...-+++++.++|-++.|.++|| +.+ |
T Consensus 203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~----~ 277 (394)
T COG2814 203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR----R 277 (394)
T ss_pred HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch----h
Confidence 567899999999999999999999999889999999876 66654 457778999999999999999998 332 2
Q ss_pred hHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLG--MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~--~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
. +.....++++..+.+. ..++....+..++.|+..+........-.++ ...++....-++...+..+|-. .|..
T Consensus 278 ~--l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia-~GA~ 353 (394)
T COG2814 278 A--LIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIA-LGAA 353 (394)
T ss_pred H--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHH-HHHH
Confidence 1 2333333444443332 2334344455556777777777777777777 5568888888888888888877 4889
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
++|.++|+.| |..+..+.+.+.+++.++.++..+++||
T Consensus 354 lGG~v~~~~g----------------------------------~~~~~~~~a~l~~~a~~~~~~~~~~~~~ 391 (394)
T COG2814 354 LGGLVLDALG----------------------------------YAATGWVGAALLLLALLLALLSARKDRR 391 (394)
T ss_pred HHHHHHHhhc----------------------------------hHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999966 8999999999999998888886655544
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.2e-07 Score=93.07 Aligned_cols=150 Identities=13% Similarity=0.144 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHhhccccccccchhh-HHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~-i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
++|..+.+..+......-++..-++. +.+++|.++. ....++..+...++.+..|+++||++||+.+ .+..
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l------~~~~ 88 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV------VFGL 88 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH------HHHH
Confidence 34555555555444444444445555 4567887765 4588899999999999999999999997532 2222
Q ss_pred HHHHHHHHHH---h-cc-----chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 328 FVMAIGHIFL---G-MG-----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 328 ~l~~~~~lll---~-~~-----~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
++.+++.+.+ . .. +...+++..++.|++.|.........+.|.+..|+.++..++...+..+|.. +++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~l 167 (399)
T PRK05122 89 CGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALA-IGAPL 167 (399)
T ss_pred HHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHH-HHHHH
Confidence 2222222111 1 11 1235677888999999999888888889999999999999998888777765 58888
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
+|.+.+..+
T Consensus 168 ~~~l~~~~g 176 (399)
T PRK05122 168 GVLLYHWGG 176 (399)
T ss_pred HHHHHHccc
Confidence 898887544
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.5e-07 Score=94.66 Aligned_cols=123 Identities=25% Similarity=0.398 Sum_probs=91.2
Q ss_pred cccchhhHHHhcCCC--------hh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-
Q 011516 270 VIDNLGQMSQSLGYD--------NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG- 338 (484)
Q Consensus 270 ~i~n~~~i~~slg~~--------~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~- 338 (484)
+...++.+..+++.+ .. ....+++.++..++.+.+|+++||++||+. +.+...+..++.++..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~------~~~~~~~~~~~~~~~~~ 120 (481)
T TIGR00879 47 IGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS------LLIIALLFVIGAILMGL 120 (481)
T ss_pred hhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH------HHHHHHHHHHHHHHHHH
Confidence 333455566665554 22 358899999999999999999999998542 2333444444444432
Q ss_pred ccc---hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 339 MGW---PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 339 ~~~---~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
... ...+++..++.|++.|..+.....+++|.+..|+.++..++...+..+|..+ ++.+.
T Consensus 121 ~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~ 183 (481)
T TIGR00879 121 AAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV-AYGFG 183 (481)
T ss_pred hccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH-HHHHH
Confidence 122 2267788899999999999999999999999999999999999999898874 66555
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.5e-07 Score=98.43 Aligned_cols=142 Identities=11% Similarity=0.141 Sum_probs=108.9
Q ss_pred cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHH--hc-cchhHHHHHHHHHHHH
Q 011516 281 LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--GM-GWPGAMYVGTLLIGLG 355 (484)
Q Consensus 281 lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll--~~-~~~~~l~~~~~l~G~~ 355 (484)
++.+.. ....+.+.++..++.+..|+++||+++|+.+ .+..++.+++.++. +. .+...+++.-++.|++
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l------~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~ 144 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSI------GIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLA 144 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhh------HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHh
Confidence 444443 3488899999999999999999999986532 23333333333332 22 2344577788999999
Q ss_pred hcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh-hhhccCccccccccCcccccCCCCCCCC
Q 011516 356 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE-AEKQHQPHHHLLNAGSIFTSMPRVDEPL 434 (484)
Q Consensus 356 ~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (484)
.|..+...+.+++|+|..|+.++..|+...+..+|..+ ++.+.|.+.|.. +
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i-~~~l~~~l~~~~~g--------------------------- 196 (465)
T TIGR00894 145 QGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFI-FLPISGWLCESWGG--------------------------- 196 (465)
T ss_pred cccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccCC---------------------------
Confidence 99999999999999999999999999999999999884 889999998763 4
Q ss_pred ccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 435 KCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 435 ~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
||.+|++.+..+++..++...+
T Consensus 197 -------w~~~f~i~~~~~~~~~~~~~~~ 218 (465)
T TIGR00894 197 -------WPMIFYVFGIVGCAWSLLWFVF 218 (465)
T ss_pred -------CCeehhhhhHHHHHHHHHHHHH
Confidence 8889999988877666555544
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-06 Score=93.95 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
++..|+.+++..........-.+.+.+++|.+..+ ...+.+.++..+|.+.+|+++||+++|+. +.+..++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~------~~~~~~~~ 111 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG------SAFLLMLT 111 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------HHHHHHHH
Confidence 33333434443333323333456677889987654 36677778888999999999999998532 23334444
Q ss_pred HHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhh
Q 011516 331 AIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEK 409 (484)
Q Consensus 331 ~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~ 409 (484)
+++.++.. ..+...+++..++.|++.|... .....++|+|..|+.|...|+......+|+. +++.+.+.+.+...+.
T Consensus 112 ~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~-~~~~~~~~i~~~~~~~ 189 (476)
T PLN00028 112 APAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGG-VTQLLMPLVFPLIKDA 189 (476)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 44444443 3455566677788899887643 3446789999989999999998766555554 3445555554432210
Q ss_pred ccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 410 QHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
.+.+..-||.+|.+.++++++..++...+
T Consensus 190 -------------------------~~~~~~gWr~~f~i~g~l~l~~~l~~~~~ 218 (476)
T PLN00028 190 -------------------------GAPSFTAWRIAFFVPGLLHIIMGILVLTL 218 (476)
T ss_pred -------------------------CCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 01011139999999999888776665543
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-06 Score=89.54 Aligned_cols=127 Identities=15% Similarity=0.245 Sum_probs=98.0
Q ss_pred chhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 011516 273 NLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTL 350 (484)
Q Consensus 273 n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~ 350 (484)
-++++.+++|.+..+ ...++..++..++.+..|+++||+++|+. +.+...+..++.++....+...+++..+
T Consensus 22 ~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (355)
T TIGR00896 22 LLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS------VAAGLLLIAAGILIRSAPGTALLFAGTA 95 (355)
T ss_pred cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH------HHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456777888888653 58899999999999999999999998642 2233333344444333455566778888
Q ss_pred HHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 351 LIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+.|++.|......+.++.|.|. ++.++..|+...+..+|.. +++.+.+.+.|..+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~-i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAA-LAAAATVPLAQHSG 150 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Confidence 9999999988899999999995 7899999999998888887 47788888876653
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.1e-07 Score=97.86 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=121.5
Q ss_pred hhcHHHHHHHHHHHHhhccc---cc-cccchhhHHHhcCCChh-HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 248 LIKADFWLIFFSLLLGSGSG---LT-VIDNLGQMSQSLGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g---~~-~i~n~~~i~~slg~~~~-~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
.+++.|+..+.++.+..... +. .-+-+++|.+++|.++. ..+.+...+.++++-.+.|-+||.+|||+ +
T Consensus 37 ~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~------~ 110 (599)
T PF06609_consen 37 YRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRY------F 110 (599)
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchH------H
Confidence 35677777766554433222 11 12335788899988764 45777888999999999999999999863 5
Q ss_pred HHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
+.+..++..+|.++.+. .+...+..+.++.|++.|.... ....++|+...|+....+.+......+... .++.++..
T Consensus 111 ~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~~~~~~~~~i~~~~-~~~~ia~~ 188 (599)
T PF06609_consen 111 FIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISELVPNKWRGLGLAIASIPFIITTW-ISPLIAQL 188 (599)
T ss_pred HHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhHhHHHHHHHHhhhc-ccHHHHHH
Confidence 66778888888887664 4566788899999999998874 567799999999887666555443322221 23333322
Q ss_pred HHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 402 IYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 402 iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
++.. .-||+.|++.+..+.+++++.++..+
T Consensus 189 ~~~~----------------------------------~~WRw~~~~~~i~~~i~~vl~~~fY~ 218 (599)
T PF06609_consen 189 FAAH----------------------------------SGWRWIFYIFIIWSGIALVLIFFFYF 218 (599)
T ss_pred hccC----------------------------------CCcchHHHHHHHHHHHHHHHHHHHhC
Confidence 2211 13999999999998888877665443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=8.4e-07 Score=104.90 Aligned_cols=160 Identities=9% Similarity=0.035 Sum_probs=111.9
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hc----CCCh---hHHHHHHHHHhhhhcccccccchhhhhhccC
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SL----GYDN---THIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-sl----g~~~---~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~ 316 (484)
++++++++|+.+|+..++....-.++...+..+.. .+ +.+. .....+++.+...+.-+++|+++||++||+.
T Consensus 5 ~~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~ 84 (1140)
T PRK06814 5 LYLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKL 84 (1140)
T ss_pred hhhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHH
Confidence 35788999999998887766543333222222221 22 2211 1235556777788889999999999999652
Q ss_pred CchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 317 YPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 317 ~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
+.. ...+.......+.+.+...+...+++..++.|++.+..+...-+++.+++..++.+...|++.++..+|.. ++|
T Consensus 85 ~~~--~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~-igp 161 (1140)
T PRK06814 85 AKI--LKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAIL-LGT 161 (1140)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHH-HHH
Confidence 211 11222222222222233356677889999999999999999999999999999999999999999999987 589
Q ss_pred HHHHHHHhhhh
Q 011516 397 LIASYIYDHEA 407 (484)
Q Consensus 397 ~l~G~iyD~~~ 407 (484)
.++|.+.+..+
T Consensus 162 ~l~g~l~~~~~ 172 (1140)
T PRK06814 162 IIGGLATISGN 172 (1140)
T ss_pred HHHHHHHhccc
Confidence 99999998655
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-07 Score=93.13 Aligned_cols=150 Identities=17% Similarity=0.133 Sum_probs=115.1
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
.++++|+++.+.++.......+...++++.+++|.++. ....+...+++.++.+.+|+++||++||+. +.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~------~~~~ 77 (381)
T PRK03633 4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS------YYLA 77 (381)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHH
Confidence 46679999988887665555566778888889998764 458999999999999999999999999642 2333
Q ss_pred HHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 327 QFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 327 ~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
..+..++.++.. .++...+++..++.|++.|..+......+.+....++.++.+|....+..+|.. +++.+.+.+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~g~~~~~~l~~~ 156 (381)
T PRK03633 78 SLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTV-LGQLLVSKVSTE 156 (381)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhccccc
Confidence 444444444433 355667788889999999988877777777888888999999999888888887 478888877654
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.5e-06 Score=92.36 Aligned_cols=141 Identities=17% Similarity=0.157 Sum_probs=98.9
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc----------cc---hhHHHHHHHHHH
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM----------GW---PGAMYVGTLLIG 353 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~----------~~---~~~l~~~~~l~G 353 (484)
...++++.++..+|-+++|+++||++||+. +.+...++.++.+..+. .+ ...+++.-++.|
T Consensus 58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~------~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G 131 (479)
T PRK10077 58 GFCVASALIGCIIGGALGGYCSNRFGRRDS------LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGG 131 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHH------HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHh
Confidence 358999999999999999999999999652 23333344444333221 11 234667889999
Q ss_pred HHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCC
Q 011516 354 LGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEP 433 (484)
Q Consensus 354 ~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (484)
++.|..++..+++++|++..|+.|+..|+...+..+|..+ ++. .+...+......
T Consensus 132 ~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~-~~~-~~~~~~~~~~~~----------------------- 186 (479)
T PRK10077 132 IGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLV-VYF-VNYFIARSGDAS----------------------- 186 (479)
T ss_pred hhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHH-HHH-HHHHHhccCccc-----------------------
Confidence 9999999999999999999999999999999998888774 544 444443211000
Q ss_pred CccccCcccHHHHHHHHHHHHHHHHHH
Q 011516 434 LKCEGSICYFLTSMIMSGLCIVAVILS 460 (484)
Q Consensus 434 ~~C~G~~Cy~~~f~i~~~~~~~~~~l~ 460 (484)
.. +..-||..|.+.+...++..++.
T Consensus 187 -~~-~~~gWr~~f~~~~~~~~~~~~~~ 211 (479)
T PRK10077 187 -WL-NTDGWRYMFASEAIPALLFLMLL 211 (479)
T ss_pred -cc-ccCChHHHHHHHHHHHHHHHHHH
Confidence 00 11249999998877776655443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-06 Score=89.42 Aligned_cols=151 Identities=14% Similarity=0.081 Sum_probs=103.8
Q ss_pred cccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHH
Q 011516 270 VIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAM 345 (484)
Q Consensus 270 ~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l 345 (484)
+....+.+.+ .+|.++.. ...++..+...++++++|+++||+++|+. . ........+...... .+++..+
T Consensus 235 ~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~ 308 (393)
T PRK15011 235 YIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL----M--RVAAVAGVCFYAGMLMAHSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----H--HHHHHHHHHHHHHHHHHhhHHHH
Confidence 4445666664 56777543 45666677788899999999999988642 1 111111112222221 3344445
Q ss_pred HHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccc
Q 011516 346 YVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFT 425 (484)
Q Consensus 346 ~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~ 425 (484)
.+...+.++++|...+..+....|.+. ++.|+..++......+|.. +++.+.|.++|..+
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~g~~~~~~~~~~~lg~~-~g~~l~G~i~~~~g------------------ 368 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMP-GQAGSATTLYTNTSRVGWI-IAGSLAGIVAEIWN------------------ 368 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHhh------------------
Confidence 555666777888877888888899997 5699999998887788887 58999999999875
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 426 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 426 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
|+..|.+.+..++++.++...
T Consensus 369 ----------------~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK15011 369 ----------------YHAVFWFALVMIIATLFCLLR 389 (393)
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHh
Confidence 888998888777766655443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=103.16 Aligned_cols=158 Identities=11% Similarity=0.118 Sum_probs=111.6
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChh----HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNT----HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~----~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.+.+++.+|+.++++.++......++..-+.... .+.+.+.. ....+++.+...++.+.+|+++||++||+.+.
T Consensus 3 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~- 81 (1146)
T PRK08633 3 KNLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIR- 81 (1146)
T ss_pred cchhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHH-
Confidence 3568899999999888876555444333333333 34444332 34677888889999999999999999964221
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+...+..+...+..+.....+...+++..++.|++.|...+...++++|++..++.++..|+..++..+|.. +++.++
T Consensus 82 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~-lg~~l~ 159 (1146)
T PRK08633 82 -IVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAIL-AGTALF 159 (1146)
T ss_pred -HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHH-HHHHHH
Confidence 011111111111111112345567888889999999999999999999999999999999999999999887 589999
Q ss_pred HHHHhh
Q 011516 400 SYIYDH 405 (484)
Q Consensus 400 G~iyD~ 405 (484)
|.+.+.
T Consensus 160 ~~l~~~ 165 (1146)
T PRK08633 160 SFLFES 165 (1146)
T ss_pred HHHHHh
Confidence 999886
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-06 Score=93.50 Aligned_cols=105 Identities=17% Similarity=0.208 Sum_probs=79.3
Q ss_pred HHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-chh--------HHHHHHHHHHHHhccccc
Q 011516 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPG--------AMYVGTLLIGLGYGAHWA 361 (484)
Q Consensus 291 Sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~-~~~--------~l~~~~~l~G~~~G~~~~ 361 (484)
++.-++-.+|.+++|+++||+|||+ .+.+..++++++.++.+.. +.. .+.+.-++.|++.|+.++
T Consensus 64 ~~~~l~~~ig~~~~G~l~Dr~Grr~------~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~ 137 (490)
T PRK10642 64 SVPFLIRPLGGLFFGMLGDKYGRQK------ILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYT 137 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHH------HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHH
Confidence 5555777889999999999999965 2455566666666655443 322 267788999999999999
Q ss_pred chhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 362 IVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 362 l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
....+++|+|..|+.|..-++...+..+|.. +++.+...+
T Consensus 138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~-lg~~~~~~~ 177 (490)
T PRK10642 138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFV-LGAGVVVLI 177 (490)
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999998888877767665 355444433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=92.38 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=104.2
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHH-Hhc-CCChh-HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSL-GYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~sl-g~~~~-~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.+++.+|++.||.+.+..++..... ...+....+. +.. +.++. ..+.....+...+|.+++++++||+++|+..
T Consensus 221 ~~~~~~~n~~~~~l~~~~~~~~~~~-~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~-- 297 (444)
T PRK09669 221 DLKLLLGNSQWRIMFIFNVVLLTAV-VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF-- 297 (444)
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHH-HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH--
Confidence 4567889999999987766543332 2222222322 211 22222 2234445577778999999999999885422
Q ss_pred hHHHHHHHHHHH-HHHHHH--hccchhHHHHHHHHHHHHhcccccchhHHHHhhh-------CccchhhhhhHHhhhhhH
Q 011516 320 PVAMAVAQFVMA-IGHIFL--GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLTLANPA 389 (484)
Q Consensus 320 ~~~l~~~~~l~~-~~~lll--~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-------G~k~~g~~yG~~~~a~~v 389 (484)
.. ...+.+ .+..++ ..++...+++..++.|+++|....+..++++|.. |.+.-|..+++...+.-+
T Consensus 298 --~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~kl 373 (444)
T PRK09669 298 --KW--TIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKL 373 (444)
T ss_pred --HH--HHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHH
Confidence 11 122112 122122 2234445677778999999999999999999987 778888999999988889
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 011516 390 GSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 390 g~~l~~~~l~G~iyD~~~ 407 (484)
|.. +++.+.|.++|..|
T Consensus 374 g~a-lg~~i~g~ll~~~G 390 (444)
T PRK09669 374 GLA-IGGAVVGWILAWVD 390 (444)
T ss_pred HHH-HHHHHHHHHHHHcC
Confidence 887 58999999999887
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.7e-06 Score=84.83 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=87.0
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.++++.+|...+..++.......+....+.+.++ +|.++.. .......++..+|.++.|.+.||.++ +.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~-----~~ 274 (394)
T PRK11652 200 YRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LM 274 (394)
T ss_pred HHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3456778888876655444332222222233445555 6776543 23333444444555555555554432 11
Q ss_pred HHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~---~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
+.......+..+..+... ..+...+.+..++.|++.|..+......+.|.+. |+.|+..++......+|.. +++.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~-~~~~ 352 (394)
T PRK11652 275 WQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSG-LAAL 352 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHH-HHHH
Confidence 111111111111111111 1233446667788899999888888888889885 8899999999888888887 4677
Q ss_pred HHHHHHh
Q 011516 398 IASYIYD 404 (484)
Q Consensus 398 l~G~iyD 404 (484)
++|++.+
T Consensus 353 ~~~~~~~ 359 (394)
T PRK11652 353 LSAMLPQ 359 (394)
T ss_pred HHHHccC
Confidence 7776653
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-06 Score=89.24 Aligned_cols=186 Identities=18% Similarity=0.209 Sum_probs=125.3
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
-++.+|+-++.++++...=.+.-.-..++.+ ++|.++.+ .++++..+...++|+..|.+.||++.|+. +.+
T Consensus 32 a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v------~~~ 105 (462)
T PRK15034 32 ARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW------TVF 105 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH------HHH
Confidence 3458898888877766555444333455555 68888754 48889999999999999999999988542 233
Q ss_pred HHHHHHHHHHHHhc------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHh----hhhhHHHHHHH
Q 011516 326 AQFVMAIGHIFLGM------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLT----LANPAGSLVFS 395 (484)
Q Consensus 326 ~~~l~~~~~lll~~------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~----~a~~vg~~l~~ 395 (484)
..++..+..+++.. ++...+++..++.|++ |+.|+.....++++|..|+.|+..|+.. ++..++..+ .
T Consensus 106 ~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l-~ 183 (462)
T PRK15034 106 STAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLV-A 183 (462)
T ss_pred HHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHH-H
Confidence 33333444444332 4566788899999998 8899999999999999899999999984 444444443 3
Q ss_pred HHHHH-HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 396 GLIAS-YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 396 ~~l~G-~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|.+.+ .+++..|.+.. ....+ +..-.+.++.+...+.+++.++..++
T Consensus 184 p~~i~~~l~~~~G~~~~----------------~~~~g-----~~~~~~~~~~~~~~~~iv~~i~~~~~ 231 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGV----------------PQADG-----SVMSLANAAWIWVPLLAIATIAAWSG 231 (462)
T ss_pred HHHHHHHHHHHhccccc----------------ccccc-----chHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44333 35565552210 00000 13347888888888888777766654
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.5e-06 Score=90.57 Aligned_cols=175 Identities=18% Similarity=0.166 Sum_probs=135.8
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
.|-..|+.+|+.+.....+.--+.-..+.+.++.|++.++ .+-|.+++.=.+++.++|.+|||...|+- +.+
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f------m~~ 99 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF------MAF 99 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee------ehH
Confidence 4555677777777777777666666678888888888765 49999999999999999999999877542 344
Q ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH--HHH
Q 011516 326 AQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA--SYI 402 (484)
Q Consensus 326 ~~~l~~~~~lll~~~~-~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~--G~i 402 (484)
.+++.++..+++.+.+ -..+.+.-++-|+.-|..|+-.--++..+|..|..|+.|++-.++..+|+.+. |.+. |++
T Consensus 100 gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~-~~~~~la~~ 178 (448)
T COG2271 100 GLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALA-PLVALLAFF 178 (448)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchH-HHHHHHHHH
Confidence 5555555555555433 33455667888999999999999999999999999999999999999999974 6777 777
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
-++.+ +|.+|++-++++++-.+..+++
T Consensus 179 ~~~~~----------------------------------w~~~f~~pgiiaiival~~~~~ 205 (448)
T COG2271 179 AFHGG----------------------------------WRAAFYFPGIIAIIVALILLFL 205 (448)
T ss_pred Hhccc----------------------------------hhHHHHHHHHHHHHHHHHHHHH
Confidence 77654 9999999998876554444443
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.2e-06 Score=90.38 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=110.8
Q ss_pred ccccchhhHHHhcCCChhHH-HHHHHHHhhhhcccccccchhhh-----hhccCCchhHHHHHHHHHHHHHHHHHhcc--
Q 011516 269 TVIDNLGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEII-----VRDYAYPRPVAMAVAQFVMAIGHIFLGMG-- 340 (484)
Q Consensus 269 ~~i~n~~~i~~slg~~~~~~-~VSl~si~n~~GRl~~G~lsD~~-----~~~~~~~r~~~l~~~~~l~~~~~lll~~~-- 340 (484)
+....++.+.++.|.+..+. .+++++.. .++++++|.++||+ +|| |.| +.+.++.++++..+++..
T Consensus 30 ~~~~~l~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~gpl~Dr~~~~~~Grr----r~~-ll~~~i~~~~~~~~~a~~~~ 103 (491)
T PRK11010 30 LTSGTLQAWMTVENIDLKTIGFFSLVGQA-YVFKFLWSPLMDRYTPPFLGRR----RGW-LLATQLLLLVAIAAMGFLEP 103 (491)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCCc----hHH-HHHHHHHHHHHHHHHHHcCC
Confidence 34445666777778776543 44444444 36899999999998 543 333 344555555554443322
Q ss_pred --chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccc
Q 011516 341 --WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLL 418 (484)
Q Consensus 341 --~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~ 418 (484)
+...+.+..++.|++.+.......+++.|+|..|+.++..++...+..+|.. +++.+.+.+.+...
T Consensus 104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~l-lg~~l~~~l~~~~~----------- 171 (491)
T PRK11010 104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAML-VSGGLALWLADRYL----------- 171 (491)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHhccc-----------
Confidence 2335666778889999999999999999999999999999999999999987 47788888887321
Q ss_pred ccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 419 NAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 419 ~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
-||.+|.+.+++++++.+..+.
T Consensus 172 ----------------------GWr~~f~i~a~l~ll~~l~~~~ 193 (491)
T PRK11010 172 ----------------------GWQGMYWLMAALLIPCIIATLL 193 (491)
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHHHHh
Confidence 2999999999888777665544
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-06 Score=87.50 Aligned_cols=149 Identities=15% Similarity=0.089 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
++|.+...+++...+.-++..-++.+.+++|.+..+ ..+++..+...++..++|.++||.+|+... +. .+.+...+
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~-~~-~~~~~~~l 82 (382)
T TIGR00902 5 PFRWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIA-LR-LLALASAI 82 (382)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH-HH-HHHHHHHH
Confidence 334455555555444445566688899999998764 488889999999999999999998763211 11 11111111
Q ss_pred HHHHHHHH-hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 330 MAIGHIFL-GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 330 ~~~~~lll-~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
..+ ++. ..++...+++..++.|.+++...+..-+++.+. .|+.+++||.+.....+|.. ++|.+.|.+.|..|
T Consensus 83 ~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~-~g~~l~g~l~~~~g 156 (382)
T TIGR00902 83 FAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFI-IGSALFGGLIGMFD 156 (382)
T ss_pred HHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 111 122 234455666777778888888888877777654 58889999999999999887 58999999999876
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1e-05 Score=85.86 Aligned_cols=104 Identities=19% Similarity=0.199 Sum_probs=77.9
Q ss_pred HhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-chh--------HHHHHHHHHHHHhcccccchhH
Q 011516 295 IWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WPG--------AMYVGTLLIGLGYGAHWAIVPA 365 (484)
Q Consensus 295 i~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~-~~~--------~l~~~~~l~G~~~G~~~~l~p~ 365 (484)
++..+|.++.|+++||++||+ .+.+...+++++.++.+.. +.. .+.+.-++.|++.|+.++....
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~ 148 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKR------MLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAAL 148 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHH
Confidence 445677788999999999964 2344555555555555443 322 3667789999999999999999
Q ss_pred HHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 366 AASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 366 i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
.++|.+..|+.|...+....+..+|.. ++..+.+.+...
T Consensus 149 ~~~e~~p~~~rg~~~~~~~~g~~~G~~-l~~~~~~~l~~~ 187 (438)
T PRK09952 149 LAVESAPKNKKAFYSSGVQVGYGVGLL-LSTGLVSLISMM 187 (438)
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 999999999999999999888888876 465666665543
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=85.31 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=104.0
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
-.|-||+++++.++..-+-..+|.--+-..++ .|.++.+ ...|..-.-+++---+.|.++||.|++- |+.+.
T Consensus 262 f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~-----~wv~~ 336 (459)
T KOG4686|consen 262 FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNL-----WWVAS 336 (459)
T ss_pred cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhccee-----hhHHH
Confidence 35789999999888776665554433333444 4777543 3455555556666778899999999853 44566
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 326 AQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 326 ~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
+.+....+|..+.+.-. .=|.+..+.|++|-...+..=+.++.+...++.|+.||+++...-+|-.+ .|.++|.+.|.
T Consensus 337 a~~~tl~~H~~l~Ft~l-sPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~-i~Iiag~i~d~ 414 (459)
T KOG4686|consen 337 ACILTLLGHSGLFFTFL-SPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAF-IPIIAGFIADG 414 (459)
T ss_pred HHHHHHHHhhhHHhhhc-cHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhH-HhhhhheeecC
Confidence 66677777766543321 12567778899887544433333344444589999999999999898874 68999999998
Q ss_pred hh
Q 011516 406 EA 407 (484)
Q Consensus 406 ~~ 407 (484)
.|
T Consensus 415 ~g 416 (459)
T KOG4686|consen 415 DG 416 (459)
T ss_pred CC
Confidence 76
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-06 Score=84.00 Aligned_cols=152 Identities=9% Similarity=-0.039 Sum_probs=101.7
Q ss_pred cchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHH
Q 011516 272 DNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYV 347 (484)
Q Consensus 272 ~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~ 347 (484)
.-++.+. +++|.++.. ...++..+...+....+|.++||++||+. + +.....+..++.++.+ .++...+++
T Consensus 18 ~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~----~-~~~~~~~~~~~~~~~~~~~~~~~l~~ 92 (375)
T TIGR00899 18 PTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKG----L-ILFCCLLAALACLLFAWNRNYFLLLV 92 (375)
T ss_pred hHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchH----H-HHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 3444443 567887653 57788888999999999999999988542 1 2222333333333333 344445666
Q ss_pred HHHHHHHHhcccccchhHHHHhhhCccchhh--hhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccc
Q 011516 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGA--LYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFT 425 (484)
Q Consensus 348 ~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~--~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~ 425 (484)
..++.|.+.+...+....++.|....+..+. .++.......+|.. +++.+.|.+.|..+
T Consensus 93 ~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-ig~~~~~~l~~~~~------------------ 153 (375)
T TIGR00899 93 LGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWV-IGPPLAFWLALGFG------------------ 153 (375)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHH-HhhhHHHHHHHhcc------------------
Confidence 6677777766666666667778776554442 36777777778876 58889999988665
Q ss_pred cCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 426 SMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 426 ~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
||..|.+.+..+++..++....
T Consensus 154 ----------------~~~~f~~~~~~~~~~~~~~~~~ 175 (375)
T TIGR00899 154 ----------------FTVMFLTAALAFVLCGVLVWLF 175 (375)
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999988777666655543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.1e-06 Score=86.08 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHhhccccccc-cchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVI-DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i-~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
.|+++...+++ .|....+. .-++++.+++|.++.+ ...+...++..++.+..|++.||+++|+ .+.+...
T Consensus 4 ~~~~~~~~f~~-~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~------~~~~g~~ 76 (410)
T TIGR00885 4 PFALITSLFAL-WGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKA------GILLGLF 76 (410)
T ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH------HHHHHHH
Confidence 35555544443 33332232 3345666778887653 5888999999999999999999999864 2345556
Q ss_pred HHHHHHHHHhc----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 329 VMAIGHIFLGM----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 329 l~~~~~lll~~----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
+++++.+++.. .+...+.+..++.|++.|.......+.+.+....++.++..++......+|.. +++.+.+.+..
T Consensus 77 l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~-~g~~i~~~l~~ 155 (410)
T TIGR00885 77 LYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSI-IGMVVAQQLIL 155 (410)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 66666655421 24455677889999999999998888898988888899999999988889887 58888887764
Q ss_pred h
Q 011516 405 H 405 (484)
Q Consensus 405 ~ 405 (484)
.
T Consensus 156 ~ 156 (410)
T TIGR00885 156 S 156 (410)
T ss_pred c
Confidence 3
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2e-05 Score=83.05 Aligned_cols=184 Identities=17% Similarity=0.206 Sum_probs=123.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhcccccccc-chhhHHHhcCCCh----h--HHHHHHHHHhhhhcccccccchhhhhhccC
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVID-NLGQMSQSLGYDN----T--HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~-n~~~i~~slg~~~----~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~ 316 (484)
.++.+|+++||.+.+- .++..+...+.. +.+.+.+++.-+. . ..+.|+=.+..++.=.++.++-+|++.|+
T Consensus 213 ~~~l~k~~~fw~~~l~-v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~- 290 (412)
T PF01306_consen 213 VLSLFKMRNFWFFVLF-VIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKN- 290 (412)
T ss_dssp HHHHTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-
T ss_pred HHHHhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHh-
Confidence 4578899999997553 333322222222 2333344433222 1 13666666667777777777777777754
Q ss_pred CchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHH-hhhhhHHHHHH
Q 011516 317 YPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSLVF 394 (484)
Q Consensus 317 ~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~-~~a~~vg~~l~ 394 (484)
.+.++..++++=.+..+ .+++..+.+.-.+-|+-++......-=.+++.|..|-.++.|.+. ..+..+|..++
T Consensus 291 -----~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 291 -----LLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp -----HHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666555554 456667777788888888877666667888899988888999886 57788999876
Q ss_pred HHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 395 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 395 ~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
+.++|++||+.| |+.+|.+++++.+..++++.......++
T Consensus 366 -s~~~G~lyd~~G----------------------------------~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 366 -SPLAGYLYDRIG----------------------------------FQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp -HHHHHHHHHHHH----------------------------------HHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred -hhhHHhhHhhcC----------------------------------cHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 579999999998 8999999999988888888876655443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.3e-06 Score=85.47 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=94.4
Q ss_pred cccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHH
Q 011516 270 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMY 346 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~ 346 (484)
+..-++.+.+++|.+..+ ..+++..+...++.+++|.++||++|+....|... +...+.. ..... .++...++
T Consensus 23 ~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~l~ 98 (382)
T PRK11128 23 FLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLA--LLTLLFA--VAFWFGAHSFWLLF 98 (382)
T ss_pred HhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHH--HHHHHHH--HHHHHhcccHHHHH
Confidence 445667888999988654 58999999999999999999999988433223221 1111111 11222 24455566
Q ss_pred HHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 347 ~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
+..++.|++.++..+...+++.++ .|+.+..+|.......+|.. ++|.++|.++|..|
T Consensus 99 i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~-igp~lgg~l~~~~g 156 (382)
T PRK11128 99 VAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFV-IGSALTGKLVSWFG 156 (382)
T ss_pred HHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHH-HHHHHHHHHHHHcC
Confidence 777778999888888877777765 46788889998888888876 58999999999876
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.33 E-value=3e-06 Score=90.91 Aligned_cols=144 Identities=17% Similarity=0.202 Sum_probs=108.3
Q ss_pred hhhHHHhcCCC---hh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHH
Q 011516 274 LGQMSQSLGYD---NT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYV 347 (484)
Q Consensus 274 ~~~i~~slg~~---~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~ 347 (484)
.+.+.++.+.+ +. ....+++.++..+|.+++|+++||++||+ .+.+..++..++.++.+ ..+...+++
T Consensus 112 ~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~------~~~~~~~~~~i~~~~~~~~~~~~~~~~ 185 (505)
T TIGR00898 112 SSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKK------VLLLSTLVTAVSGVLTAFSPNYTVFLV 185 (505)
T ss_pred cccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchH------HHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 34566677765 32 45889999999999999999999999853 23334444444444433 345667888
Q ss_pred HHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccC
Q 011516 348 GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSM 427 (484)
Q Consensus 348 ~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~ 427 (484)
..++.|++.|+.+.....+++|+++.|+.+...++...+..+|.. +++.+++.+.
T Consensus 186 ~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~-~~~~~~~~~~------------------------ 240 (505)
T TIGR00898 186 FRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLV-LLPLVAYFIP------------------------ 240 (505)
T ss_pred HHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHH-HHHHHHHHhh------------------------
Confidence 889999999999999999999999999999999999888888876 4565543332
Q ss_pred CCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 428 PRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 428 ~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
-||..|.+.+..+++..+..+
T Consensus 241 -------------~wr~~~~~~~i~~~~~~~~~~ 261 (505)
T TIGR00898 241 -------------DWRWLQLAVSLPTFLFFLLSW 261 (505)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Confidence 188899998888777766653
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=84.96 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=73.9
Q ss_pred HHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cc--------hhHHHHHHHHHHHHhccccc
Q 011516 291 SMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW--------PGAMYVGTLLIGLGYGAHWA 361 (484)
Q Consensus 291 Sl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~--------~~~l~~~~~l~G~~~G~~~~ 361 (484)
++.-++..+|.+++|+++||++||+. +.+...+++++.++.+. ++ +..+.+.-++.|++.|+.++
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Grr~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~ 143 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGRKKS------MLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 33334445888899999999999752 34445555555554433 22 23477788999999999999
Q ss_pred chhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHH
Q 011516 362 IVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASY 401 (484)
Q Consensus 362 l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~ 401 (484)
....+++|.+..|+.|...++...+...|.. +++.+.+.
T Consensus 144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~-~~~~~~~~ 182 (432)
T PRK10406 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQL-LALLVVVV 182 (432)
T ss_pred hHHHHHHHhCCCCcccHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999988887777666654 34444333
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00013 Score=78.39 Aligned_cols=188 Identities=12% Similarity=0.081 Sum_probs=121.0
Q ss_pred CCCCHHHHhhcHH----HHHHHHHHHHhhccccccccc-hhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhh
Q 011516 240 EDFTLTQALIKAD----FWLIFFSLLLGSGSGLTVIDN-LGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIV 312 (484)
Q Consensus 240 ~~~t~~~~l~~~~----FWll~~~~~~~~g~g~~~i~n-~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~ 312 (484)
.+.+++|+++++. .++.....++....|...++. .-.|.++.|.+.. ...-...++.|.+..+.+.++-||++
T Consensus 254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g 333 (485)
T KOG0569|consen 254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG 333 (485)
T ss_pred cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5778999998743 445555566666666654443 3455677788754 34666788999999999999999999
Q ss_pred hccCCchhHHHHHHHHHHHHHHHHHh-------ccchh---HHHHHHHHHHHHhcccccch-hHHHHhhhCccchhhhhh
Q 011516 313 RDYAYPRPVAMAVAQFVMAIGHIFLG-------MGWPG---AMYVGTLLIGLGYGAHWAIV-PAAASELFGLKKFGALYN 381 (484)
Q Consensus 313 ~~~~~~r~~~l~~~~~l~~~~~lll~-------~~~~~---~l~~~~~l~G~~~G~~~~l~-p~i~se~FG~k~~g~~yG 381 (484)
||. . +.....++.+..+++. ...+. ....+.++..+.|+...+-. ..+++|+|..++.++...
T Consensus 334 RRp-----L-ll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s 407 (485)
T KOG0569|consen 334 RRP-----L-LLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQS 407 (485)
T ss_pred CcH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHH
Confidence 853 2 2223333333222221 11111 12344455555666554433 458999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 382 FLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 382 ~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
+......+..++.+ ..+=.+++..|. ..|++..+.|++..+...
T Consensus 408 ~~~~~~w~~~fiv~-~~fp~l~~~~g~-----------------------------------~~filF~i~~~~~~i~~~ 451 (485)
T KOG0569|consen 408 VATAVNWLSNFIVG-FAFPPLQNVIGP-----------------------------------YVFILFVIPLAIFLIYLY 451 (485)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHhcc-----------------------------------hhhHHHHHHHHHHHHHHH
Confidence 99988888777653 566666666551 456777777777666666
Q ss_pred Hhhhhhhh
Q 011516 462 ILVHRTTN 469 (484)
Q Consensus 462 ~l~~r~r~ 469 (484)
...-.||.
T Consensus 452 ~~lPETkg 459 (485)
T KOG0569|consen 452 RYLPETKG 459 (485)
T ss_pred HhCcccCC
Confidence 66666663
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-05 Score=82.06 Aligned_cols=159 Identities=15% Similarity=0.129 Sum_probs=115.4
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+-....|+|.-|.+-+-+.+.+..-..++.-+++|..|.|++... .++|+..+.....-++..++.+|. |+ .|+
T Consensus 200 ~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~--~n--~r~ 275 (395)
T COG2807 200 SVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRS--KN--QRP 275 (395)
T ss_pred cccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHh--cc--cch
Confidence 445589999999999999888888888999999999999999754 599999999999999999999873 22 233
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccch-hhhhhHHhhhhhHHHHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF-GALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~-g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
+ ..+...++.++.+-+...+....+...++.|++.|+.|++.-..+.+..-..+. +..=|+......+=+. ++|.+.
T Consensus 276 ~-~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa-~GP~l~ 353 (395)
T COG2807 276 L-VVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAA-FGPWLF 353 (395)
T ss_pred H-HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHh-hhhhhH
Confidence 3 334444455555434333333344457999999999999988888777654333 3344444433333333 589999
Q ss_pred HHHHhhhh
Q 011516 400 SYIYDHEA 407 (484)
Q Consensus 400 G~iyD~~~ 407 (484)
|+++|.+|
T Consensus 354 G~lhDa~g 361 (395)
T COG2807 354 GFLHDATG 361 (395)
T ss_pred hHHHHhcC
Confidence 99999998
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.3e-06 Score=87.89 Aligned_cols=156 Identities=11% Similarity=0.069 Sum_probs=103.4
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVA 322 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~ 322 (484)
+..++|+.|+.+.+..++......+.......+.+....++. ..+.++.++...++-+++|+++||+++|+.+
T Consensus 225 ~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~----- 299 (473)
T PRK10429 225 ALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW----- 299 (473)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-----
Confidence 445688888888777766654333322222222222222222 2355556678889999999999999886421
Q ss_pred HHHHHHHHHHHHHHH-----h-ccchhHHHHHHHHHHHHhcccccchhHHHHhh-------hCccchhhhhhHHhhhhhH
Q 011516 323 MAVAQFVMAIGHIFL-----G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLTLANPA 389 (484)
Q Consensus 323 l~~~~~l~~~~~lll-----~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~-------FG~k~~g~~yG~~~~a~~v 389 (484)
.+...+.+++.+.+ . ..+...+++..++.|++.|..+.+.+++++|. .|.|.-|..|++.....-+
T Consensus 300 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~ 378 (473)
T PRK10429 300 -AGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKG 378 (473)
T ss_pred -HHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHH
Confidence 12222222222221 1 12233456677889999999999999999999 7888899999999999888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 011516 390 GSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 390 g~~l~~~~l~G~iyD~~~ 407 (484)
|.. +++.+.|.+.|..|
T Consensus 379 ~~a-l~~~i~g~~l~~~G 395 (473)
T PRK10429 379 GSA-FAAFFIGVVLGLIG 395 (473)
T ss_pred HHH-HHHHHHHHHHHHcC
Confidence 887 48899999999776
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.3e-05 Score=83.38 Aligned_cols=145 Identities=15% Similarity=0.116 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
-|+++++.++.....-.....-++++.+++|.++.+ ...+.+.++..++-+..|.+.||+++|+ .+.+...+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~------~l~~g~~~ 100 (438)
T PRK10133 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFL 100 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH------HHHHHHHH
Confidence 566777666665555555555667777788988654 5888999999999999999999999964 23445555
Q ss_pred HHHHHHHH---h-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 330 MAIGHIFL---G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 330 ~~~~~lll---~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
.+++.+++ . ..+...+.++-++.|++.|.........+.|....+......++......+|.. +++.+.+.+-
T Consensus 101 ~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~-~g~~~g~~l~ 177 (438)
T PRK10133 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLI 177 (438)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 55665443 2 345556778889999999999999999999875544444467788888888887 4666655543
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-06 Score=87.86 Aligned_cols=141 Identities=16% Similarity=0.192 Sum_probs=122.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHhcccccchhHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW-PGAMYVGTLLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~-~~~l~~~~~l~G~~~G~~~~l~p~i 366 (484)
.+.+..++.+.+--.+.|.+.||++.| +| +++...+|..+-.+|++.+ ...+.++-.+-|++..+.+...-++
T Consensus 110 ~LFaskA~~qllvnp~~G~l~~~iGy~--ip----m~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglam 183 (464)
T KOG3764|consen 110 LLFASKALVQLLVNPFFGNLIDRIGYK--IP----MVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAM 183 (464)
T ss_pred HHHHHHHHHHHHhcccchhhHHHhccc--cH----HHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHH
Confidence 588888899999999999999999884 33 5667777888888888755 5578889999999999999999999
Q ss_pred HHhhhCccch-hhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHH
Q 011516 367 ASELFGLKKF-GALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLT 445 (484)
Q Consensus 367 ~se~FG~k~~-g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~ 445 (484)
++|.|+.++- |+..|+...+..+|.. .+|++.|.+||..| |+.+
T Consensus 184 lAd~f~~d~er~~vmGialgfislG~l-vgPpfGGilYe~~G----------------------------------k~aP 228 (464)
T KOG3764|consen 184 LADVFPEDNERGSVMGIALGFISLGVL-VGPPFGGILYEFAG----------------------------------KSAP 228 (464)
T ss_pred HHHHcccchhhhHHHHHHHHHHhccce-ecCCcccchHhhcC----------------------------------CcCc
Confidence 9999997764 9999999999999987 59999999999988 7789
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 446 SMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 446 f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
|+|+++++++...+-+.+...+|.
T Consensus 229 FlVL~~v~Lld~~L~l~vi~p~~~ 252 (464)
T KOG3764|consen 229 FLVLAIVLLLDGALQLLVIEPTEM 252 (464)
T ss_pred HHHHHHHHHHHHHHHHheeCcccc
Confidence 999999999999999988766543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=8e-05 Score=77.39 Aligned_cols=156 Identities=15% Similarity=0.168 Sum_probs=114.6
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
+..++++++.+|+-.+..||..|...++=+.+.++..+ +|.++. +.++|.+=.+-++||..+-++-.|+... |
T Consensus 228 ~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~----k 303 (422)
T COG0738 228 GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPE----K 303 (422)
T ss_pred hHHHHHhChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----H
Confidence 67889999999999999999999999999999999988 676654 4589999999999996666555566442 2
Q ss_pred hHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~ 399 (484)
. +.+..+...+-++.....+...-..+..++|+..+..|+..-++..+..| +|-+..=+++.++. +|+.+. |++.
T Consensus 304 ~--Laf~a~~~ill~~~~~l~~g~v~~~~l~~ig~F~simfPTIfslal~~l~-~~ts~~s~~l~mai-vGGAii-P~l~ 378 (422)
T COG0738 304 Y--LAFYALIAILLLLAVALIGGVVALYALFLIGLFNSIMFPTIFSLALKNLG-EHTSVGSGLLVMAI-VGGAII-PPLQ 378 (422)
T ss_pred H--HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHhHHHHHHHHHHHHhccC-ccccccceeeeehe-ecchHH-HHHH
Confidence 2 22211111111111112222344456788999999999999999999999 77777777777775 676654 8999
Q ss_pred HHHHhhhh
Q 011516 400 SYIYDHEA 407 (484)
Q Consensus 400 G~iyD~~~ 407 (484)
|++-|..+
T Consensus 379 G~i~d~~g 386 (422)
T COG0738 379 GVIADMFG 386 (422)
T ss_pred HHHHHhhh
Confidence 99999987
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.24 E-value=2.3e-06 Score=95.41 Aligned_cols=168 Identities=15% Similarity=0.179 Sum_probs=115.7
Q ss_pred hhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-----------
Q 011516 274 LGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG----------- 340 (484)
Q Consensus 274 ~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~----------- 340 (484)
++++-+.++.++.. .++|.+.+++.++.+..|++.||.+|++.+ .+..++++++.++++..
T Consensus 56 l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i------~~g~ll~~lg~ll~alphf~~~~y~~~~ 129 (633)
T TIGR00805 56 LTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVI------GIGCAIMGLGSFLLSLPHFLSGRYSYST 129 (633)
T ss_pred chhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEE------EecHHHHHHHHHHHhChHHhcCCccccc
Confidence 34555667776543 589999999999999999999999886533 33344444554443221
Q ss_pred -----------------------------------------chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhh
Q 011516 341 -----------------------------------------WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGAL 379 (484)
Q Consensus 341 -----------------------------------------~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~ 379 (484)
....++++-++.|++.|..+.+.++.+.|.+..|+.+..
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~ 209 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLY 209 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHH
Confidence 012356788999999999999999999999999999999
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 011516 380 YNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 459 (484)
Q Consensus 380 yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 459 (484)
.|+...+..+|.. +++.+.|.+.+...+-... +.. .....+++ -...+.|+..|++.+++.++..+.
T Consensus 210 ~~i~~~~~~iG~~-lG~llgg~l~~~~~d~~~~------~~~---~~~l~~~d---prWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 210 IGILESIAVFGPA-FGYLLGSFCLQIYVDTGSV------NTE---DVILTPTD---PRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred HHHHHHHHHhhhH-HHHHHHHHHHhcccccccC------CCC---CCCCCCCC---ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987 5888988887654311000 000 00000111 111235888999999888776654
Q ss_pred H
Q 011516 460 S 460 (484)
Q Consensus 460 ~ 460 (484)
.
T Consensus 277 l 277 (633)
T TIGR00805 277 F 277 (633)
T ss_pred H
Confidence 3
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.7e-05 Score=81.13 Aligned_cols=172 Identities=8% Similarity=-0.022 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhH-HHhcCCChhHH--HHHHHHH-hhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSLGYDNTHI--FVSMISI-WNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i-~~slg~~~~~~--~VSl~si-~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
|..-|.+++..++.....-++...++.. .+++|.++.+. .++...+ ...++.+.+|+ +||+++|+.+ +..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~-----~~~ 87 (393)
T PRK15011 14 DLTSTAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSL-----IVF 87 (393)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHH-----HHH
Confidence 5566777777666555544455555554 46788876643 4444444 45566777777 9999986421 222
Q ss_pred HHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccch--hhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 326 AQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF--GALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 326 ~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~--g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
..++..++..+++. .+...+++...+.|...+........++.+....++. +...++...+..+|.. ++|+++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~-~g~~i~~~l 166 (393)
T PRK15011 88 CCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWV-IGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHH-HhhHHHHHH
Confidence 22333333333333 2333344444444444445555666667776654432 2333677778888887 589999999
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
.|..| +|.+|.+.+.++++..++..+
T Consensus 167 ~~~~g----------------------------------w~~~f~~~~~~~~~~~~~~~~ 192 (393)
T PRK15011 167 AMGFS----------------------------------FTVMYLSAAVAFIVCGVMVWL 192 (393)
T ss_pred HHhcC----------------------------------hHHHHHHHHHHHHHHHHHHHh
Confidence 99776 999999998888777655444
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2e-05 Score=85.22 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=90.0
Q ss_pred CCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 241 ~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
...+++++++|..|.+.+..+|.......+.+.++.+.++ .|++..+ .+-..+.+.+.+|-+++|++|||+... ..
T Consensus 263 ~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~-~~ 341 (495)
T KOG2533|consen 263 WKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTI-FA 341 (495)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhh-HH
Confidence 4578899999999999999999999998888888888888 4566543 467788899999999999999996410 01
Q ss_pred chhHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhh
Q 011516 318 PRPVAMAVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 386 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~~~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a 386 (484)
.|..+.....+...+++..+... .....+... -+|......+.++.+..=.++.+.+++-+.+.
T Consensus 342 ~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~ 406 (495)
T KOG2533|consen 342 RRLLFIVFLCLYAIIGAISLLAAAVLPGAYGAF-----LIGPYGLIATAIIALSWTSANLAGNTKALTTV 406 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchHHhHHH-----HhcchhhHHHHHHHHhhccccccchHHhHHHH
Confidence 23334444555666664443332 222222222 22222233344555555555666666655443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.2e-05 Score=86.67 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=84.9
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cc------hhHHHHHHHHHHHHhcccc
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GW------PGAMYVGTLLIGLGYGAHW 360 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~------~~~l~~~~~l~G~~~G~~~ 360 (484)
...+...++..+|.+++|+++||++||+. +.+..++..++.++... .+ ...+++.-++.|++.|..+
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRV------YGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHH------HHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhh
Confidence 58888999999999999999999999652 22333333333333222 21 3467788899999999999
Q ss_pred cchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 361 AIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 361 ~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
+..+..++|.+..|+.|+..++......+|.. +++.+.+.+..
T Consensus 134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~-~g~~~~~~~~~ 176 (502)
T TIGR00887 134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGIL-AGAIVALIVLA 176 (502)
T ss_pred HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999999988886 46666665543
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.6e-05 Score=82.22 Aligned_cols=161 Identities=16% Similarity=0.212 Sum_probs=106.9
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcC-CChhHHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLG-YDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg-~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
+.++++|+|+++..++..++...+--.+.+..+.+.+++| ++.... ..+.++ +.+.=+..=.+++|+.+|.+..+
T Consensus 199 ~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~-g~~~~l-~~~aEi~~f~~~~~~~~r~g~~~-- 274 (400)
T PF03825_consen 199 DALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTI-GILWAL-GVVAEIPFFFFSGRFLKRFGIKW-- 274 (400)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHH-HHHHHH-HHHHHHHHHHHHHHHHHhcCHHH--
Confidence 4568999999998777776665555455445555678888 443321 112221 12334444456678877766443
Q ss_pred HHHHHHHHHHHHHHHHhcc-ch-hHHHH----HHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhh-hhhHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGMG-WP-GAMYV----GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTL-ANPAGSLVF 394 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~~-~~-~~l~~----~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~-a~~vg~~l~ 394 (484)
++.++.+..++=..+++.. ++ ...+. .-.+-|++||..+......+.+.+..+..++..++... ..++|..+
T Consensus 275 ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~i- 353 (400)
T PF03825_consen 275 LLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAI- 353 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHH-
Confidence 3455555555555555543 33 22222 23457999999999999999999999999999998764 56899884
Q ss_pred HHHHHHHHHhhhhh
Q 011516 395 SGLIASYIYDHEAE 408 (484)
Q Consensus 395 ~~~l~G~iyD~~~~ 408 (484)
+..++|++||+.|.
T Consensus 354 G~~igG~l~~~~g~ 367 (400)
T PF03825_consen 354 GSLIGGWLYDAFGA 367 (400)
T ss_pred HHHHHHHHHHHhcc
Confidence 78999999999883
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=83.33 Aligned_cols=157 Identities=12% Similarity=0.108 Sum_probs=104.0
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhHH-HHHH-HHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTHI-FVSM-ISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~~-~VSl-~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++++|++.|+.+.+..++............+.+.++ +|.++... +..+ ..+...++..++|.+.||+++|+ .
T Consensus 221 ~~~l~~n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~----~ 296 (448)
T PRK09848 221 LQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKN----T 296 (448)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH----H
Confidence 5678999999998887776655444443334444443 35443322 2222 24556778888899999887643 2
Q ss_pred HHHHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcccccchhHHHHhhh-------CccchhhhhhHHhhhhhHH
Q 011516 321 VAMAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLTLANPAG 390 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-------G~k~~g~~yG~~~~a~~vg 390 (484)
+.+..++..++.+++... +...+++..++.|++.|..+....++.+|.- |.|+.|..+|+..+..-+|
T Consensus 297 --~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg 374 (448)
T PRK09848 297 --FLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCG 374 (448)
T ss_pred --HHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHH
Confidence 233344444454443322 2334555677889999998888888887765 5566799999999999999
Q ss_pred HHHHHHHHHHHHHhhhh
Q 011516 391 SLVFSGLIASYIYDHEA 407 (484)
Q Consensus 391 ~~l~~~~l~G~iyD~~~ 407 (484)
.. +++.+.|.+.+..|
T Consensus 375 ~a-ig~~i~g~~l~~~G 390 (448)
T PRK09848 375 QA-IGGSIPAFILGLSG 390 (448)
T ss_pred HH-HHHHHHHHHHHHcC
Confidence 88 48899999988766
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.3e-05 Score=78.89 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=107.9
Q ss_pred chhhHHHhcCCChhHH-HHHHHHHhhhhcccccccchhhhhh-ccCCchhHHHHHHHHHHHHHHHHHhcc----chhHHH
Q 011516 273 NLGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEIIVR-DYAYPRPVAMAVAQFVMAIGHIFLGMG----WPGAMY 346 (484)
Q Consensus 273 n~~~i~~slg~~~~~~-~VSl~si~n~~GRl~~G~lsD~~~~-~~~~~r~~~l~~~~~l~~~~~lll~~~----~~~~l~ 346 (484)
-++.+.++.|.+..+. ..+...+...+ ++++|.++||+.. +.+..|+|+ ....++.++..+.+... ....++
T Consensus 10 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l-~~~~~~~~~~~~~l~~~~~~~~l~~l~ 87 (356)
T TIGR00901 10 TLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWL-VLTQVLLLSLLLILSFLVPSTDLPLLA 87 (356)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHH-HHHHHHHHHHHHHHHcCCcchhHHHHH
Confidence 4567778899987653 33433444443 9999999999832 112234443 33444444443333322 222355
Q ss_pred HHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCccccc
Q 011516 347 VGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTS 426 (484)
Q Consensus 347 ~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~ 426 (484)
...++.+++.+......-+++.|++..|+.+...|+...+..+|.. +++.+++.+++..+..+
T Consensus 88 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~-~~~~l~~~l~~~~g~~~---------------- 150 (356)
T TIGR00901 88 GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGML-LSGSLALVLASPEFANT---------------- 150 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHH-HHHHHHHHHhhhccccc----------------
Confidence 5556777888878778888999999999999999999999999887 57889999987766211
Q ss_pred CCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 427 MPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 427 ~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
..+..||.+|.+.+...+++.+..++
T Consensus 151 ----------~~~~~wr~~f~i~ai~~l~~~~~~~~ 176 (356)
T TIGR00901 151 ----------GLITLWGYIFFWTALLILPGLLVTLF 176 (356)
T ss_pred ----------ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 12457999999988877765555443
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.6e-05 Score=81.21 Aligned_cols=159 Identities=19% Similarity=0.284 Sum_probs=118.7
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCCh-hHHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDN-THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~-~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
..+++.++++.|+.+++..++......+.......+.+. +|.++ ...+..+..+.+.++-.++++++||+++|+.+
T Consensus 216 ~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~-- 293 (428)
T PF13347_consen 216 DSLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY-- 293 (428)
T ss_pred cchhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh--
Confidence 356888999999999999888755555444444555554 35443 23466678888999999999999999987632
Q ss_pred hHHHHHHHHHHHHHHHHHh-c--cchhHHHHHHHHHHHHhcccccchhHHHHhhh-------CccchhhhhhHHhhhhhH
Q 011516 320 PVAMAVAQFVMAIGHIFLG-M--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLTLANPA 389 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~-~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-------G~k~~g~~yG~~~~a~~v 389 (484)
.....+.+++.+++. . ++...+++..++.|+++|..+.+..++.+|.. |.++-|..+++.....-+
T Consensus 294 ----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~ 369 (428)
T PF13347_consen 294 ----IIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKI 369 (428)
T ss_pred ----hhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHH
Confidence 333344444443322 2 46777888999999999999999999999877 467789999999988888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 011516 390 GSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 390 g~~l~~~~l~G~iyD~~~ 407 (484)
+..+ ++.+.|.+.+..|
T Consensus 370 ~~~l-a~~i~g~~l~~~G 386 (428)
T PF13347_consen 370 GQGL-AGAIVGLLLALVG 386 (428)
T ss_pred HHHH-HHHHHHHHHHHhC
Confidence 8874 7788888888776
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.3e-05 Score=81.91 Aligned_cols=148 Identities=16% Similarity=0.108 Sum_probs=104.5
Q ss_pred cchhhHHHhcCCChhHH-HHHHHHHhhhhcccccccchhhh-----hhccCCchhHHHHHHHHHHHHHHHHHhcc----c
Q 011516 272 DNLGQMSQSLGYDNTHI-FVSMISIWNFLGRVGGGYFSEII-----VRDYAYPRPVAMAVAQFVMAIGHIFLGMG----W 341 (484)
Q Consensus 272 ~n~~~i~~slg~~~~~~-~VSl~si~n~~GRl~~G~lsD~~-----~~~~~~~r~~~l~~~~~l~~~~~lll~~~----~ 341 (484)
.-++.+.++.|++..++ +++....- .+.+.++|.++||+ +||+ .| +.++..+++++...+... +
T Consensus 20 ~~~~~~l~~~g~~~~~ig~~~~~~~~-~~~~~l~g~~~Dr~~~~~~g~rr----~~-l~~~~~~~~l~~~~l~~~~~~~~ 93 (402)
T PRK11902 20 GTLQAWMTVEGLDIQTIGFFSLVGQA-YIFKFLWAPLMDRYTPPLLGRRR----GW-LLLTQVGLAASIAAMAFCPPHAA 93 (402)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHcccccCCCcch----hH-HHHHHHHHHHHHHHHHhcCccch
Confidence 44566778899997764 33443333 58899999999999 5533 23 344444444444443332 1
Q ss_pred hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccC
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAG 421 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~ 421 (484)
...+++..++.+++.........+++.|++..|+.++..++...+..+|.. +++.+.+.+.+...
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i-~g~~l~~~l~~~~~-------------- 158 (402)
T PRK11902 94 LWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAML-VSGGLALWLADRVL-------------- 158 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHH-HHhHHHHHHHhccc--------------
Confidence 233555556678888888888899999999999899999999999888887 47788888887531
Q ss_pred cccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHH
Q 011516 422 SIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVIL 459 (484)
Q Consensus 422 ~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l 459 (484)
-+|..|.+.+.++++..+.
T Consensus 159 -------------------gw~~~f~i~a~~~l~~~l~ 177 (402)
T PRK11902 159 -------------------GWGNTYLLMAGLMLAGALT 177 (402)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHH
Confidence 1899999998887665553
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=75.61 Aligned_cols=153 Identities=13% Similarity=0.007 Sum_probs=88.8
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
++.++++.++...+..++..+.......-.+.+.+ .+|.++.. ...+..+++..+|.+..|.+.|+.+++ +.
T Consensus 199 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~----~~- 273 (393)
T PRK11195 199 RVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL----RV- 273 (393)
T ss_pred HHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc----ch-
Confidence 34566666665544443333333333333344444 35776543 466777777778877777777654432 21
Q ss_pred HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccc--hhhhhhHHhhhhhHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~--~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
+.... ++++..+++.. +++..+.+..++.|++.|.......+.+.+. ..++ .|+..++..+...++..+ +..+
T Consensus 274 -~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~-~~~~~~~g~~~a~~~~~~~~~~~~-~~~~ 349 (393)
T PRK11195 274 -LPAGI-LMGLVVLLMALQHSLLPAYPLLILIGALGGFFVVPMNALLQHR-GHVLVGAGHSIAVQNFNENLAMLL-MLGL 349 (393)
T ss_pred -HHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhh-CcccccchhHHHHHhHHHHHHHHH-HHHH
Confidence 12222 22232222332 2333344566688998888777677777775 5554 588999999998888774 6677
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
++.+ |..+
T Consensus 350 ~~~~-~~~~ 357 (393)
T PRK11195 350 YSLL-VKLG 357 (393)
T ss_pred HHHH-HHcC
Confidence 7754 5554
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00023 Score=75.02 Aligned_cols=155 Identities=12% Similarity=-0.010 Sum_probs=81.1
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.+|++.||...+.+++.......+....+.+.++. |.++... .......+..+|-.+.+ ++.+++.-+|.
T Consensus 211 ~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~----~~~~~~~~~~~ 286 (413)
T PRK15403 211 FRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVA----RFVKDPTEPRF 286 (413)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH----HHhccCCchhH
Confidence 45789999999988887776665555555667777765 6765432 22223333334333333 32222211222
Q ss_pred HHH-----HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 321 VAM-----AVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 321 ~~l-----~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
... .+...++.++.++ ..++...++++.++.|+|.|...+......-.-.. ...|+.-++.......+.. .+
T Consensus 287 ~~~~~~~~~ig~~l~~~~~~~-~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al~~~~-~~~G~a~a~~~~~~~~~~~-~~ 363 (413)
T PRK15403 287 IWRAVPIQLVGLALLIVGNLL-WPHVWLWSVLGTSLYAFGIGLIFPTLFRFTLFSNN-LPKGTVSASLNMVILMVMA-VS 363 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-ccccHHHHHHHHHHHHHHHHHHhHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHH-HH
Confidence 111 1111111111111 11122224567778888888766655543322222 2357777776666555555 46
Q ss_pred HHHHHHHHhh
Q 011516 396 GLIASYIYDH 405 (484)
Q Consensus 396 ~~l~G~iyD~ 405 (484)
+.+.|++++.
T Consensus 364 ~~~~g~~~~~ 373 (413)
T PRK15403 364 VEIGRWLWFN 373 (413)
T ss_pred HHHHHHHHHc
Confidence 7788888876
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.7e-05 Score=79.26 Aligned_cols=131 Identities=18% Similarity=0.262 Sum_probs=91.6
Q ss_pred hhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-ch--------hHHHHHHHHHHHHhcccccchhHH
Q 011516 296 WNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-WP--------GAMYVGTLLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 296 ~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~-~~--------~~l~~~~~l~G~~~G~~~~l~p~i 366 (484)
...+|.++.|+++||++||+. +.+...+..++.+++... +. ..+++..++.|++.|..++..+..
T Consensus 47 ~~~i~~~~~G~l~dr~g~r~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 120 (394)
T TIGR00883 47 ARPLGAIVFGHFGDRIGRKKT------LVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALY 120 (394)
T ss_pred HhhhHHHHhhhhhhhhhhHHH------HHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 345688999999999998642 334455555555554432 21 136667789999999999999999
Q ss_pred HHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHH
Q 011516 367 ASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTS 446 (484)
Q Consensus 367 ~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f 446 (484)
++|.+..|+.+...++...+..+|..+ ++.+.+.+.+..++.. ...-.||..|
T Consensus 121 ~~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~~~~~~~~~~~--------------------------~~~~~w~~~~ 173 (394)
T TIGR00883 121 LAEYAPPGKRGFYGSFQQVGAPVGLLL-AALTVLLLSYLLGDDA--------------------------LLEWGWRIPF 173 (394)
T ss_pred hhhcCCcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHH--------------------------hhccchHHHH
Confidence 999999999999999999998888874 6777666654322100 0011489999
Q ss_pred HHHHHHHHHHHHH
Q 011516 447 MIMSGLCIVAVIL 459 (484)
Q Consensus 447 ~i~~~~~~~~~~l 459 (484)
.+.+..++++.++
T Consensus 174 ~~~~~~~~~~~~~ 186 (394)
T TIGR00883 174 LVSAVLVLIGLYL 186 (394)
T ss_pred HHHHHHHHHHHHH
Confidence 8877766655433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.09 E-value=5.9e-05 Score=80.60 Aligned_cols=159 Identities=9% Similarity=0.088 Sum_probs=123.1
Q ss_pred hhhHHHhcCCChhH---HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Q 011516 274 LGQMSQSLGYDNTH---IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGT 349 (484)
Q Consensus 274 ~~~i~~slg~~~~~---~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~ 349 (484)
.+++.+++|.++.+ ...+.+.++-.+..+..|+++||++.|+. +.+..+...+..+++.. .+...+.+.-
T Consensus 49 ~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v------L~l~~l~Wsl~t~L~~fa~Sl~~L~i~R 122 (511)
T TIGR00806 49 TPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV------LVLQALSFVCVWLLLLLGTSVWHMQLME 122 (511)
T ss_pred HHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688988765 48999999999999999999999987542 23333333333333332 3456788889
Q ss_pred HHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCC
Q 011516 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPR 429 (484)
Q Consensus 350 ~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
++.|++.|+.+ ..-..+...|..|++++..++...+..+|..+ ++++.+.+. ..|
T Consensus 123 ~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~I-a~~L~qll~-s~g---------------------- 177 (511)
T TIGR00806 123 VFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFL-SSVLGQLLV-TLG---------------------- 177 (511)
T ss_pred HHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hcC----------------------
Confidence 99999999999 88899999999999999999999999999985 778888733 232
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011516 430 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 472 (484)
Q Consensus 430 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~ 472 (484)
-.-|+.-.+|..+...+++++++.+=...|..|-
T Consensus 178 ---------Wr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f 211 (511)
T TIGR00806 178 ---------WISYSTLNIISLVFMTFSVFLALFLKRPKRSLFF 211 (511)
T ss_pred ---------chhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhh
Confidence 1249999999999999999999998766666553
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.2e-05 Score=79.56 Aligned_cols=126 Identities=14% Similarity=0.198 Sum_probs=84.2
Q ss_pred cccchhhHHHhcCCChhH---HHHHHH-----HHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-
Q 011516 270 VIDNLGQMSQSLGYDNTH---IFVSMI-----SIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG- 340 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~~---~~VSl~-----si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~- 340 (484)
+....+++.++++.++.+ ...+.. .+...+|.+.+|+++||++||+. +.....+..++.++....
T Consensus 34 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~------l~~~~~~~~~~~~l~~~~~ 107 (434)
T PRK15075 34 FGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKG------LIVTLSIMASGTLLIAFVP 107 (434)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHH------HHHHHHHHHHHHHHHHhCC
Confidence 334456677888766532 122221 12224677889999999999652 334444555555554433
Q ss_pred chh--------HHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 341 WPG--------AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 341 ~~~--------~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
+.. .+.+.-++.|++.|..++..+..++|++..|+.++..++......+|.. +++.+++.+
T Consensus 108 ~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~-~g~~~g~~l 176 (434)
T PRK15075 108 GYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVV-FAALLGYLL 176 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 222 3567788999999999998999999999999999999998877666655 355444443
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.7e-05 Score=78.42 Aligned_cols=161 Identities=16% Similarity=0.179 Sum_probs=118.6
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
.|+++..+.++.-+..++.++..=...+++.-.+-++. ++|.++.+. +--..++..++|-+++|++.||++.|+.+
T Consensus 243 ~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl- 321 (438)
T COG2270 243 STFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVL- 321 (438)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceee-
Confidence 36677776666666555555543333344444455555 788887654 55567888899999999999999886322
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
+....++..+....+....+..+++...++|+..|+..+..-+..+++...++-+.-||+-.+..-.+++ ++|.+
T Consensus 322 ----~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~-~gp~l 396 (438)
T COG2270 322 ----MIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASF-LGPFL 396 (438)
T ss_pred ----hHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHH-HHHHH
Confidence 2222222333333333445667888999999999999999999999999999999999999999988887 69999
Q ss_pred HHHHHhhhhh
Q 011516 399 ASYIYDHEAE 408 (484)
Q Consensus 399 ~G~iyD~~~~ 408 (484)
.|.+-|.+++
T Consensus 397 v~v~t~iTg~ 406 (438)
T COG2270 397 VAVITQITGS 406 (438)
T ss_pred HHHHHHHhcc
Confidence 9999999983
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.6e-05 Score=81.86 Aligned_cols=154 Identities=14% Similarity=0.172 Sum_probs=106.8
Q ss_pred HHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhHHHHHHHH----HhhhhcccccccchhhhhhccCCchh
Q 011516 245 TQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMIS----IWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 245 ~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~~VSl~s----i~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
+.-+|+++|..+|++-.+......+..--++-+..++..+ ...+++.. +-..+--+.+|.+.||+.||+.
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S--~~~valv~~a~~LP~~Llsl~aG~laDr~drrri---- 77 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGS--PLMVALVQAASTLPILLLSLFAGALADRFDRRRI---- 77 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH----
Confidence 4568999999999998765444433333333333333322 23444443 3444556788999999988652
Q ss_pred HHHHHHHHHHHHHHHH---H---hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIF---L---GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVF 394 (484)
Q Consensus 321 ~~l~~~~~l~~~~~ll---l---~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~ 394 (484)
+..+.++.++..+. + ...++..+++.+++.|++.....+..-+++.|+...++.....++..+...++-. +
T Consensus 78 --li~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~-i 154 (524)
T PF05977_consen 78 --LILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARI-I 154 (524)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHh-c
Confidence 33334333322211 1 1234667888999999999999999999999999999999999999888888776 5
Q ss_pred HHHHHHHHHhhhh
Q 011516 395 SGLIASYIYDHEA 407 (484)
Q Consensus 395 ~~~l~G~iyD~~~ 407 (484)
||.++|.++...|
T Consensus 155 GPalgG~Lva~~G 167 (524)
T PF05977_consen 155 GPALGGILVAFFG 167 (524)
T ss_pred cchHHHHHHHHHH
Confidence 9999999998887
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=81.74 Aligned_cols=131 Identities=16% Similarity=0.042 Sum_probs=103.7
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhH
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPA 365 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~ 365 (484)
....+++-++..+|-+++|++||++|||. .+.++..+..+..+..+ ..+...+.+.-++.|++.++.+.+...
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~------~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKP------VLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHH------HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHh
Confidence 34778888999999999999999999964 23444555555554444 456677888999999999999999999
Q ss_pred HHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHH
Q 011516 366 AASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLT 445 (484)
Q Consensus 366 i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~ 445 (484)
+++|+++.|+.+..-.+ ......++.+ .+.+++++.. + ||..
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~-~~~~~a~~~~--~----------------------------------Wr~~ 236 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLM-LPAGAAYITR--D----------------------------------WRWL 236 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHH-HHHHHHHHHh--h----------------------------------HHHH
Confidence 99999999999999999 5555566664 5778877775 2 9999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011516 446 SMIMSGLCIVAVILSM 461 (484)
Q Consensus 446 f~i~~~~~~~~~~l~~ 461 (484)
+++....+++.+++.+
T Consensus 237 ~~~~~~~~~~~~~~~~ 252 (521)
T KOG0255|consen 237 FWIISIPSGLFLLLWF 252 (521)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999888877733
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0003 Score=75.44 Aligned_cols=158 Identities=11% Similarity=0.052 Sum_probs=93.4
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCChh-HHHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~~~-~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
+++.++|+.|+.+....++..............+.+.. |.++. ..+..+..+.+.+|-+++++++||+++|+. +
T Consensus 221 l~~~~~Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~----~ 296 (460)
T PRK11462 221 LRDIWQNDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTI----F 296 (460)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH----H
Confidence 45677888888886655444332222222222233322 32222 245667788899999999999999987532 1
Q ss_pred HHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcccccchhHHHHhh-------hCccchhhhhhHHhhhhhHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM--GWPGAMYVGTLLIGLGYGAHWAIVPAAASEL-------FGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~-------FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
. .........+.+++.. .+...+++..++.|++.|....+..++++|. .|.|+-|..|+....+.=+|..
T Consensus 297 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~a 375 (460)
T PRK11462 297 W-WTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLA 375 (460)
T ss_pred H-HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHH
Confidence 1 1111111112222222 2222345556677887777666555666655 5688888888887777777776
Q ss_pred HHHHHHHHHHHhhhh
Q 011516 393 VFSGLIASYIYDHEA 407 (484)
Q Consensus 393 l~~~~l~G~iyD~~~ 407 (484)
+++.+.|.+.+..|
T Consensus 376 -lg~~i~g~iL~~~G 389 (460)
T PRK11462 376 -FGGALIGWMLAYGG 389 (460)
T ss_pred -HHHHHHHHHHHHcC
Confidence 47788888888765
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=75.61 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=105.5
Q ss_pred CCCHHHHhhcHHHHHHHHHHHHhhccccccccchhh-HHHhcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQ-MSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 241 ~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~-i~~slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
+..+++++++|+-|+...+...+..+--+.=..++- +.+...-+.... ..--.++.-.+|--+.|.+.||+.+.
T Consensus 260 ~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~--- 336 (464)
T KOG3764|consen 260 GTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHL--- 336 (464)
T ss_pred CccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCch---
Confidence 446677888888887766543322221111111122 122222111111 11123455678888999999998752
Q ss_pred chhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCcc------chhhhhhHHhhhhh
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLK------KFGALYNFLTLANP 388 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~---~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k------~~g~~yG~~~~a~~ 388 (484)
| |.+.+ ..+..++..... .++...+++.-...|++-|..-+.+-.+...+...+ -||..|++-..+..
T Consensus 337 -~-wl~~~-~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~s 413 (464)
T KOG3764|consen 337 -R-WLLSL-GGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFS 413 (464)
T ss_pred -h-HHHHH-HHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHHHHHHH
Confidence 3 43332 333333433322 234445666555555555544444444444443333 57788999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 389 AGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 389 vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
+|.. +||.++|.++.+-| |++.-.+.+..+++=.-+...+
T Consensus 414 la~a-~GP~~gg~iv~~iG----------------------------------F~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 414 LAYA-IGPTFGGSLVEAIG----------------------------------FEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred Hhhh-ccccccchheeehh----------------------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 9887 59999999998887 8899899998887766555554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00013 Score=76.38 Aligned_cols=156 Identities=13% Similarity=0.148 Sum_probs=101.4
Q ss_pred HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccc------hhHHHHHH
Q 011516 279 QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGW------PGAMYVGT 349 (484)
Q Consensus 279 ~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~------~~~l~~~~ 349 (484)
+.+|.++. ....++..+++++...+.|+++||..+|++-.|+|++. .....+++.+++. .++ ...+.+..
T Consensus 28 ~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 106 (437)
T TIGR00792 28 DVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLI-GAIPFSIVLVLLFTTPDFSATGKLVYAYITY 106 (437)
T ss_pred HccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHH-hHHHHHHHHHHHHhCCCCCcchHHHHHHHHH
Confidence 45688765 35888999999999999999999987665545666544 3333344443332 221 12334455
Q ss_pred HHHHHHhcccccchhHHHHhhh-CccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCC
Q 011516 350 LLIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMP 428 (484)
Q Consensus 350 ~l~G~~~G~~~~l~p~i~se~F-G~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~ 428 (484)
++.+.+++......-++..|+. ..++.++..++...+..+|..+ ...+.+.+....+...
T Consensus 107 ~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l-~~~~~~~l~~~~~~~~------------------ 167 (437)
T TIGR00792 107 ILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLL-VAVIVLPLVSYFGGGD------------------ 167 (437)
T ss_pred HHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc------------------
Confidence 6678888776555556777776 3578888888888887787764 4456666665433100
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 429 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 429 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
...-|+..|.+.++++++..++..+.
T Consensus 168 ---------~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 168 ---------DKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred ---------ccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 01248999999988887776655443
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.7e-05 Score=79.42 Aligned_cols=152 Identities=21% Similarity=0.375 Sum_probs=109.8
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhh-hhccCCchhHH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEII-VRDYAYPRPVA 322 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~-~~~~~~~r~~~ 322 (484)
-++-..+||=-|--+..- ++...+-.-+..+.+|+++.+ .+++.++-.-..--+++||++||+ |+|+ +
T Consensus 24 ~~if~vE~WERFsyYGmr---aiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~----t-- 94 (498)
T COG3104 24 YLIFFVELWERFSYYGMR---AILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRR----T-- 94 (498)
T ss_pred HHHHHHHHHHHHhhhhhH---HHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhH----H--
Confidence 345555666554433221 111112222333346687654 488888888888999999999996 4533 2
Q ss_pred HHHHHHHHHHHHHHHhcc---chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchh--hhhhHHhhhhhHHHHHHHHH
Q 011516 323 MAVAQFVMAIGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFG--ALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g--~~yG~~~~a~~vg~~l~~~~ 397 (484)
+++..+++.+||++++.. .+..++++.+++++|+|..=+-...+++|+++.++-- .-+++.+++..+|++ ++|.
T Consensus 95 I~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl-~~p~ 173 (498)
T COG3104 95 IVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSL-IAPI 173 (498)
T ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHH-HHHH
Confidence 467788899999998755 4678999999999999999999999999999976543 456777888889997 5999
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
+.|++-+..|
T Consensus 174 i~~~~~~~~g 183 (498)
T COG3104 174 ITGLLAINYG 183 (498)
T ss_pred HHHHHHHhhC
Confidence 9999887654
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=79.47 Aligned_cols=144 Identities=15% Similarity=0.207 Sum_probs=110.6
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHH
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i 366 (484)
....+++.++-.+|.+.+|++.||+.- ++. .........+++.+-...++...+.+.-++.|+.-++.|+....+
T Consensus 84 ~~~~t~F~v~Yii~~~p~~~L~~r~~l----s~~-l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~ 158 (495)
T KOG2533|consen 84 GVLDTVFYVGYIIGQFPSGLLGDRFPL----SKG-LSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAI 158 (495)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHhCCh----HHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHH
Confidence 458889999999999999999999853 221 111122222222222335666678888899999999999999999
Q ss_pred HHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHH
Q 011516 367 ASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTS 446 (484)
Q Consensus 367 ~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f 446 (484)
++.+|+.+++|+..|+.+....+|++ +++.++..++..++.. +...||..|
T Consensus 159 lg~wy~~~e~g~r~~~~~a~~~~g~i-~ggliA~g~~~~~~~~----------------------------~~~gW~~~F 209 (495)
T KOG2533|consen 159 LGNWYGKSERGLRMGIWYASASLGNI-FGGLIAYGVFKLNGSG----------------------------GLAGWRWLF 209 (495)
T ss_pred HHhhcChhhhhhhHHHHHHhcchhhH-HHHHHHHHhhhhcCCC----------------------------CcCCceeeh
Confidence 99999999999999999999999998 5888888887755521 234699999
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 011516 447 MIMSGLCIVAVILSMILV 464 (484)
Q Consensus 447 ~i~~~~~~~~~~l~~~l~ 464 (484)
+|.++++++..++.++..
T Consensus 210 iI~G~i~~~~gi~~f~~l 227 (495)
T KOG2533|consen 210 IIEGVITLVLGIVVFFFL 227 (495)
T ss_pred hHHHHHHHHHHheEEEEe
Confidence 999999888777766543
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.023 Score=61.14 Aligned_cols=83 Identities=16% Similarity=0.156 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 324 AVAQFVMAIGHIFLG----------MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 324 ~~~~~l~~~~~lll~----------~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
.+..++.+++.+.+. ..+...+.+..++.|++.....+....++++.-..+..|+..|+..++..+|.++
T Consensus 353 ~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l 432 (475)
T TIGR00924 353 TLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLL 432 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554433 2355668889999999999999999999999999999999999999999999884
Q ss_pred HHHHHHHHHHhhhh
Q 011516 394 FSGLIASYIYDHEA 407 (484)
Q Consensus 394 ~~~~l~G~iyD~~~ 407 (484)
++.+....+|..+
T Consensus 433 -~~~~~~~~~~~~~ 445 (475)
T TIGR00924 433 -GGYLATFGAVPQG 445 (475)
T ss_pred -HHHHHHHHhcccc
Confidence 6777777766543
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.01 Score=64.39 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=95.7
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHHHhc
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW----------PGAMYVGTLLIGLGYG 357 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~----------~~~l~~~~~l~G~~~G 357 (484)
.+-++.+++..+.-.+.+++-.|+++|. +....+.+...+++++.+.+.... ...+.+..++.|++.+
T Consensus 320 ~~~s~n~i~iil~~p~~~~~~~~l~~r~--~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~ 397 (500)
T PRK09584 320 QYQALNPFWIMIGSPILAAIYNKMGDRL--PMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGEL 397 (500)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhCcCC--CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHH
Confidence 3444445444444444444445555543 333445666777777776643211 2367778899999999
Q ss_pred ccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccc
Q 011516 358 AHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCE 437 (484)
Q Consensus 358 ~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ 437 (484)
...++....+.++-..+..|...|+.+++..+|+.+ +..+.+.+....... ++ ....
T Consensus 398 ~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~-~g~~~~~~~~~~~~~-------------------~~--~~~~- 454 (500)
T PRK09584 398 MISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALI-AGYVANLMAVPDNVT-------------------DP--LMSL- 454 (500)
T ss_pred HHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccccccc-------------------cc--hhhh-
Confidence 999999999999999999999999888888777764 444444332111100 00 0011
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 438 GSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 438 G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
.-|...|...+.++++..++.+++..+.+|
T Consensus 455 --~~~~~~f~~~~~~~~~~a~~~~~~~~~~~k 484 (500)
T PRK09584 455 --EVYGRVFLQIGIATAVIAVLMLLTAPKLNR 484 (500)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 118899999988877655555554444444
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00033 Score=76.03 Aligned_cols=133 Identities=19% Similarity=0.250 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhH
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPA 365 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~ 365 (484)
+.+++.+.+++.+|.+.+|.++|++|||+. +.++.++..++.++.+. .+...++++-++.|+|.|....+.|.
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~------l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKT------LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchh
Confidence 479999999999999999999999999753 34555566666665543 46678999999999999999999999
Q ss_pred HHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHH
Q 011516 366 AASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLT 445 (484)
Q Consensus 366 i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~ 445 (484)
.++|+=..+..|..-.+..+...+|.. ++ .+.|+..+.. . .-||..
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~-~~-~~~~~~~~~~-~-------------------------------~~Wr~~ 211 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGIL-LG-YCINYGTSKV-Y-------------------------------AGWRIP 211 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHH-HH-HHHhhhhccC-C-------------------------------ccHHHH
Confidence 999999988999888888888776554 34 4554444332 0 138877
Q ss_pred HHHHHHHHHHHHHH
Q 011516 446 SMIMSGLCIVAVIL 459 (484)
Q Consensus 446 f~i~~~~~~~~~~l 459 (484)
+.+....+++-.+.
T Consensus 212 ~~~~~i~~~~~~~~ 225 (513)
T KOG0254|consen 212 LGLALIPAVILALG 225 (513)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777666655
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00039 Score=72.15 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=94.7
Q ss_pred HHHHHHHHhhccccccccchhhHHHhcCCChhHH-HH---HHHHHhhhhccccc-ccchhhhhhccCCchhHHHHHHHHH
Q 011516 255 LIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHI-FV---SMISIWNFLGRVGG-GYFSEIIVRDYAYPRPVAMAVAQFV 329 (484)
Q Consensus 255 ll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~-~V---Sl~si~n~~GRl~~-G~lsD~~~~~~~~~r~~~l~~~~~l 329 (484)
.++..++......-....-++.+.+++|.+..+. +. ++-.+..++.-.++ ++.+||++| +|.|++.+ +.+
T Consensus 5 ~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~----r~~~i~~~-~~~ 79 (390)
T TIGR02718 5 TLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGR----RRSWVLPM-QCL 79 (390)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCc----chhHHHHH-HHH
Confidence 3333343333332334466788889999887654 32 33333343333222 444454444 34443333 222
Q ss_pred HHHHHHHHh---cc-c-hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 330 MAIGHIFLG---MG-W-PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 330 ~~~~~lll~---~~-~-~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
.......++ .. . ...+.....+.+++...+-...-.++.|....|+++..-+....+..+|.. +++.+.|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~-~g~~~~~~l~~ 158 (390)
T TIGR02718 80 VSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFF-GGGAGTLVLFG 158 (390)
T ss_pred HHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 221111111 11 1 112233333444555555555556778888878777766666666677776 57788889998
Q ss_pred hhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 405 HEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
..+ +|.+|++.+++.++..+..+++
T Consensus 159 ~~g----------------------------------w~~~f~~~a~l~~~~~~~~~~~ 183 (390)
T TIGR02718 159 KFG----------------------------------QRPAFLLVACVPLASLVCVLWL 183 (390)
T ss_pred HhC----------------------------------HHHHHHHHHHHHHHHHHHHHHc
Confidence 876 8999999999888777665444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00065 Score=73.27 Aligned_cols=168 Identities=15% Similarity=0.119 Sum_probs=107.5
Q ss_pred cccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhh----hhhccCCchhHHHHHHHHHHHHHHHHHhccch-
Q 011516 270 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEI----IVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP- 342 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~----~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~- 342 (484)
...+++++.+.+|.+... ....+..+...+.-.+.|++||| +||| |++++ .......++.+++.....
T Consensus 23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~il-~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPFIA-AGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHHHH-HHHHHHHHHHHHHHhCchh
Confidence 346677888899998653 47778888999999999999996 6664 44433 223333444444332111
Q ss_pred -----------------hHHHHHHHHHHHHhcccccchhHHHHhhhCccch--hhhhhHHhhhhhHHHHHHHHHHHHHH-
Q 011516 343 -----------------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKF--GALYNFLTLANPAGSLVFSGLIASYI- 402 (484)
Q Consensus 343 -----------------~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~--g~~yG~~~~a~~vg~~l~~~~l~G~i- 402 (484)
..+.++..+..++.........++++|++..++. +..+++......+|+. +++.+.|..
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i-lg~~~g~~~~ 176 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV-LGYAAGAYSG 176 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 1122233344557777777888999999997754 6789988888889987 466666543
Q ss_pred -HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 403 -YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 403 -yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
++..+-. .++.++.-..-++..|++.+.+.+++++++++..
T Consensus 177 ~~~~~~~~---------------------~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v 218 (477)
T TIGR01301 177 LYKIFPFT---------------------KTEACGVSCANLKSCFLIDIILLAILTYIALSAV 218 (477)
T ss_pred HHHhcccc---------------------cccccccccchHHHHHHHHHHHHHHHHHHHeeee
Confidence 3322210 0111122334589999998888777777766654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=75.39 Aligned_cols=109 Identities=18% Similarity=0.203 Sum_probs=86.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHhcccccchhHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWP-GAMYVGTLLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~-~~l~~~~~l~G~~~G~~~~l~p~i 366 (484)
.+-|.+++.-++.-..||-+||+.|||. .+ .+.....++..++++..+. ..+.++-++.|+..| ..++.-++
T Consensus 72 flGSsF~ilQ~~sS~~~G~~SD~yGRkp-----vl-l~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rAi 144 (451)
T KOG2615|consen 72 FLGSSFSILQFISSPLWGCLSDRYGRKP-----VL-LACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRAI 144 (451)
T ss_pred hHhhHHHHHHHHhhhhhhhhhhhhCchH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHHH
Confidence 4778999999999999999999999952 22 3333344445555554333 345556788898888 56677799
Q ss_pred HHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 367 ASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 367 ~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
++|++-.|+.+...+.+.++..+|.+ +||.++|++-.
T Consensus 145 isdV~sek~r~l~ms~v~~a~~lGfi-lGPmIGgyla~ 181 (451)
T KOG2615|consen 145 ISDVVSEKYRPLGMSLVGTAFGLGFI-LGPMIGGYLAQ 181 (451)
T ss_pred HHhhcChhhccceeeeeehhhhcchh-hcchhhhHHHh
Confidence 99999999999999999999999987 59999998887
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=77.86 Aligned_cols=168 Identities=17% Similarity=0.243 Sum_probs=121.0
Q ss_pred HHHHHHHHHhhccccccccchh----hHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLG----QMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~----~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
|...++.|+..+....+++..+ .+.++++.+.. +...|+..-...+.-.+.+.+.||++.|. ..++..
T Consensus 45 WvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~------v~i~G~ 118 (509)
T KOG2504|consen 45 WVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRT------VMIAGG 118 (509)
T ss_pred eeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchH------HHHHHH
Confidence 4444445445455555555554 33345555443 45777777667777778888888887642 235566
Q ss_pred HHHHHHHHHHhcc-chhHHHH-HHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh
Q 011516 328 FVMAIGHIFLGMG-WPGAMYV-GTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 328 ~l~~~~~lll~~~-~~~~l~~-~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~ 405 (484)
++.++++++-.+. +...+++ ..++.|+|.|..+.-...++..+|- |+.+..-|+...+.++|..++ |++--++.|.
T Consensus 119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~-~~l~~~l~~~ 196 (509)
T KOG2504|consen 119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVF-PPLLKYLLSK 196 (509)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeH-HHHHHHHHHH
Confidence 6677777665543 3334444 6788899999999999999999996 999999999999999999988 5788899999
Q ss_pred hhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 406 EAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
.| +|.++++.+++++-.++..+.+
T Consensus 197 ~G----------------------------------~r~~~l~~~~~~l~~~~~~~~~ 220 (509)
T KOG2504|consen 197 YG----------------------------------WRGALLIFGGISLNVLVAGALL 220 (509)
T ss_pred hC----------------------------------cHHHHHHHHHHHHHHHHHHHHc
Confidence 87 8999999999986665555553
|
|
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=77.05 Aligned_cols=138 Identities=13% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh--c-cchhHHHHHHHHHHHHhcccccch
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG--M-GWPGAMYVGTLLIGLGYGAHWAIV 363 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~--~-~~~~~l~~~~~l~G~~~G~~~~l~ 363 (484)
..+.|.+.++..++-+-.|++.||+|.|+ .+....++.+++-++.. . .....+.+.-++.|+++|..++.+
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~------v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~ 149 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARR------VFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAI 149 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchH------HHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhh
Confidence 35777888888888999999999998864 23333444444444432 1 222366788899999999999999
Q ss_pred hHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhh-hhhhccCccccccccCcccccCCCCCCCCccccCccc
Q 011516 364 PAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDH-EAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICY 442 (484)
Q Consensus 364 p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy 442 (484)
..++++++..++.++..++++.+..+|..+ +-+++|++-+. .| |
T Consensus 150 ~~i~~~W~P~~Ers~~~ail~~g~q~g~v~-~mp~sg~lc~s~~G----------------------------------W 194 (466)
T KOG2532|consen 150 GSILAKWAPPNERSTFIAILTAGSQLGTII-TMPVSGLLCESSLG----------------------------------W 194 (466)
T ss_pred hceeeeECCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHhccCCC----------------------------------C
Confidence 999999999999999999999999999985 66799999887 33 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 011516 443 FLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 443 ~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
+..|++.++++++-.+++.++..
T Consensus 195 ~sifY~~g~~g~i~~~~w~~~~~ 217 (466)
T KOG2532|consen 195 PSIFYVFGIVGLIWFILWFLFYS 217 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888887765
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0016 Score=69.02 Aligned_cols=163 Identities=17% Similarity=0.193 Sum_probs=104.5
Q ss_pred cchhhHHHhcCCChh----------HHHHHHHHHhhhh-cccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc
Q 011516 272 DNLGQMSQSLGYDNT----------HIFVSMISIWNFL-GRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG 340 (484)
Q Consensus 272 ~n~~~i~~slg~~~~----------~~~VSl~si~n~~-GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~ 340 (484)
-+.+.|.++.|..+. +..-.++.+++.+ |-.+..+++|+++||+ +....+.++.+.++.++..
T Consensus 325 L~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~------iq~~GF~~~~i~~~~~~~~ 398 (538)
T KOG0252|consen 325 LFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKY------IQLMGFFIMTIFFFVIAGP 398 (538)
T ss_pred cHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHH------HHHhhHHHHHHHHHHHcCC
Confidence 355777777776432 1123355556665 9999999999999975 3344555555555555432
Q ss_pred c-----hhHHHHHHHHHHH--HhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCc
Q 011516 341 W-----PGAMYVGTLLIGL--GYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQP 413 (484)
Q Consensus 341 ~-----~~~l~~~~~l~G~--~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~ 413 (484)
. ...+.+...+..+ .+|..-.++ .+-+|.|..+-.|+.||+-....=+|+++ +...+++.-|++- .
T Consensus 399 y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttf-ivpaE~FParvR~t~hGIsAA~GK~GAiv-g~~~F~~~t~~~y--p--- 471 (538)
T KOG0252|consen 399 YNQLENTIGFVVLYSLTFFFGNFGPNATTF-IVPAEIFPARVRSTCHGISAASGKAGAIV-GAFGFLYLTDHNY--P--- 471 (538)
T ss_pred cccccccCceeehHHHHHHHHhcCCCceeE-EeehhhchHHHhhhhhhHHHHhccchHHH-HHHHhhHhhhccC--C---
Confidence 1 1122222222222 445444433 56689999999999999998888888874 6666666555431 0
Q ss_pred cccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 011516 414 HHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYS 472 (484)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~ 472 (484)
+ . .-++.+|++.+++++++.+..+.+- .++++-.
T Consensus 472 ----------------~----~----~g~~~v~~i~~~~~~~gi~~T~l~p-Etk~~~l 505 (538)
T KOG0252|consen 472 ----------------P----N----IGVRNVFIILAGCMLLGILFTLLIP-ETKGKSL 505 (538)
T ss_pred ----------------c----c----ccchHHHHHHHHHHHHhHheeEEee-cccccCH
Confidence 0 0 1389999999999999999988876 6665554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=97.60 E-value=2.7e-07 Score=97.36 Aligned_cols=159 Identities=18% Similarity=0.277 Sum_probs=98.2
Q ss_pred cchhhHHHhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHH------hccc----
Q 011516 272 DNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL------GMGW---- 341 (484)
Q Consensus 272 ~n~~~i~~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll------~~~~---- 341 (484)
+..+.+.+..|.++......+.++.+.++.+++.++.||++||+.. .+...++++..+.+ ....
T Consensus 274 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~------i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (451)
T PF00083_consen 274 YYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLL------IIGLLLMAICSLILGIIFFLGVSSSSWW 347 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence 3345566666666553333466677889999999999999997532 12222222222211 1111
Q ss_pred hhHHHHHHHHHHHHhcccccchh-HHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCcccccccc
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVP-AAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNA 420 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p-~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~ 420 (484)
.....+...+...+++..+...+ .++.|+|..+..++..|+.....-+++.+ .+.+...+.+..+
T Consensus 348 ~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i-~~~~~~~~~~~~~------------- 413 (451)
T PF00083_consen 348 SILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFI-IPFLFPYLFNNLG------------- 413 (451)
T ss_pred ccccceeeeeccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-------------
Confidence 11222233334445554555555 77799999999999999998887777764 5666666665543
Q ss_pred CcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011516 421 GSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVY 471 (484)
Q Consensus 421 ~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~ 471 (484)
....|.+.+++++++.+........||+.-
T Consensus 414 ---------------------~~~~~~i~~~~~~i~~i~~~~~lpET~g~~ 443 (451)
T PF00083_consen 414 ---------------------GWGVFLIFAGVCLIAIIFVYFFLPETKGKT 443 (451)
T ss_pred ---------------------ccccchhhHHHHHHHHhheeEEEeeCCCCC
Confidence 234677777888888877776666666543
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0023 Score=65.99 Aligned_cols=173 Identities=18% Similarity=0.246 Sum_probs=114.9
Q ss_pred HHHHHHHHHhhccccccccchhhHH----HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLGQMS----QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~~i~----~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
|++.....+....-=..+..++++. +++|.+.+. .+.++=-++-...-.+.. ++.||.+..|. ++...
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~----~Lar~~g~er~--l~~~L 84 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAP----RLARRFGEERS--LFLAL 84 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHhhHHH--HHHHH
Confidence 5555555555444445556666655 456776543 233332222222223333 44444444554 45556
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 328 FVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 328 ~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
++.+++.++=.......++.++.++|.+.+..-.+.|.++.+.|+ |+.+...|+-.++-.+|+.+ ++.+.-.+-...+
T Consensus 85 lli~~G~~iR~~~~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaL-aa~lavpla~~~~ 162 (395)
T COG2807 85 LLIAAGILIRSLGGLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAAL-AAALAVPLAQHSG 162 (395)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHH-HhhhhhHHHHhhc
Confidence 667777766444456679999999999999999999999999998 99999999988887777663 5444434433331
Q ss_pred hhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011516 408 EKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRT 467 (484)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~ 467 (484)
-+|.++..++..+++++++++.-..|+
T Consensus 163 ---------------------------------gW~~aL~~WAl~allAl~~WlPq~~r~ 189 (395)
T COG2807 163 ---------------------------------GWRGALGFWALLALLALLIWLPQALRE 189 (395)
T ss_pred ---------------------------------cHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 399999999999999999988765444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0028 Score=69.21 Aligned_cols=181 Identities=11% Similarity=0.114 Sum_probs=114.7
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
..+++....+.+..++....+..+..-++-+++ .+|.++. ..+.+.++++..+|-++.+.+.+++.+ .+ ++
T Consensus 214 v~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~----~~--lv 287 (524)
T PF05977_consen 214 VRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS----RR--LV 287 (524)
T ss_pred HhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc----ch--hh
Confidence 334555444333322222222233344555554 4566554 357788888888877777766655433 22 23
Q ss_pred HHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLGMG-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 324 ~~~~~l~~~~~lll~~~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
....++.+++.+.++.. +.....+..++.|++........-+++-+.-..+..|+.+++..+....+.. +|..+.|.+
T Consensus 288 ~~~~~~~a~~~~~lal~~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~-lGsll~G~l 366 (524)
T PF05977_consen 288 LLASLLFALALLLLALSPSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMP-LGSLLWGFL 366 (524)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44455555555555554 3444556778889999988888888888999989999999998877655444 588999999
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 468 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r 468 (484)
-|..| .+.++.+.++..+++.++......|.+
T Consensus 367 a~~~g----------------------------------~~~al~~a~~~lll~~~~~~~~~l~~~ 398 (524)
T PF05977_consen 367 ADHFG----------------------------------VRTALLIAGAALLLSALIALRFPLRQG 398 (524)
T ss_pred HHHhC----------------------------------HHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 99887 566777777665566655555444433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0038 Score=64.60 Aligned_cols=179 Identities=17% Similarity=0.155 Sum_probs=115.1
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCCh----h--------------H-HHHHHHHHhhhhcccc
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN----T--------------H-IFVSMISIWNFLGRVG 303 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~----~--------------~-~~VSl~si~n~~GRl~ 303 (484)
+.+=..+|...|.+|++..........++..+-|...+.+..+ . . .=+-+.+...+.|-++
T Consensus 321 sp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLI 400 (528)
T KOG0253|consen 321 SPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLI 400 (528)
T ss_pred ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhH
Confidence 3334456778888888877665555555555555544332211 0 0 1233567778999999
Q ss_pred cccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc--c-c--hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhh
Q 011516 304 GGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM--G-W--PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA 378 (484)
Q Consensus 304 ~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~--~-~--~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~ 378 (484)
.|++-||+|||+++ +..+++.++-.+++.. + + ...+..+.+.+-.+|+..+.-.| |.|..+-.++
T Consensus 401 t~~iverlGRKkTM------al~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtP----EVyPTavRat 470 (528)
T KOG0253|consen 401 TGVIVERLGRKKTM------ALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTP----EVYPTAVRAT 470 (528)
T ss_pred HHHHHHHhcchhHH------HHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecC----cccchhhhhc
Confidence 99999999998754 3334444433333221 1 1 22345566777777777776666 9999999999
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH
Q 011516 379 LYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI 458 (484)
Q Consensus 379 ~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~ 458 (484)
.-|......=+|++ +.|.++ ..... .-..+..+-+++|+++.+
T Consensus 471 gvGtcSsmaRIggI-~~p~iA-~~~e~-----------------------------------s~sl~i~vy~~~~ilagI 513 (528)
T KOG0253|consen 471 GVGTCSSMARIGGI-FSPVIA-MRAEL-----------------------------------STSLPIFVYGALFILAGI 513 (528)
T ss_pred chhhhhhHHhhhhh-hhhHHH-HHhcc-----------------------------------ceeehHHHHHHHHHHHHH
Confidence 99999999999997 578776 22111 123456677888888888
Q ss_pred HHHHhhhhhh
Q 011516 459 LSMILVHRTT 468 (484)
Q Consensus 459 l~~~l~~r~r 468 (484)
+++.+=+.+|
T Consensus 514 avcffPiEtk 523 (528)
T KOG0253|consen 514 AVCFFPIETK 523 (528)
T ss_pred HheeeeeccC
Confidence 8777655554
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.12 Score=55.91 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchh-HHHHHHHHHHHHHHHH-------Hhc----cchhHHHHHHHHHHHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP-VAMAVAQFVMAIGHIF-------LGM----GWPGAMYVGTLLIGLG 355 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~-~~l~~~~~l~~~~~ll-------l~~----~~~~~l~~~~~l~G~~ 355 (484)
.+.++..++-.+...+.|.+.||+++|+.-+++ .-+.+..++.+++.+. +.. .+...+....++.|++
T Consensus 313 ~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~G 392 (489)
T PRK10207 313 SFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG 392 (489)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHH
Confidence 344555555545555568899999887532222 2223333444444432 111 1234466678899999
Q ss_pred hcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 356 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 356 ~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
.+......-..+.+.-..+..|...|+.++...+|..+ +..+++
T Consensus 393 e~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~l-g~~l~~ 436 (489)
T PRK10207 393 ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLL-GGYVAT 436 (489)
T ss_pred HHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999998899999999999999999999999898874 654444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00041 Score=73.24 Aligned_cols=98 Identities=18% Similarity=0.260 Sum_probs=71.2
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHH--h--ccch----hHHHHHHHHHHHHhcccc
Q 011516 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFL--G--MGWP----GAMYVGTLLIGLGYGAHW 360 (484)
Q Consensus 289 ~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll--~--~~~~----~~l~~~~~l~G~~~G~~~ 360 (484)
.=..-.+++.+|.++.||+.|+++||+.+-... +++.++-.+. . .+++ .+|...-.+.|+|.|+-+
T Consensus 89 Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~l------iImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 89 VNAAALVGTIFGQLFFGWLGDKFGRKKVYGKEL------IIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHH------HHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 334566789999999999999999987654332 2222222222 1 2223 346667789999999999
Q ss_pred cchhHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 361 AIVPAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 361 ~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
++..++++|.=-.|..|+.-+.++...++|..
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil 194 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGIL 194 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence 99999999999999999888877776665543
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0038 Score=66.17 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=95.0
Q ss_pred HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc------hhHHHHHHH
Q 011516 279 QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW------PGAMYVGTL 350 (484)
Q Consensus 279 ~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~------~~~l~~~~~ 350 (484)
+.+|.+.. ...+++..+++++.-.+.|+++||...|.+-.|+|++...........+++..++ ...+++..+
T Consensus 38 ~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~ 117 (444)
T PRK09669 38 DVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYI 117 (444)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 45688765 3588899999999999999999998766665677765433322222222333321 123444556
Q ss_pred HHHHHhcccccchhHHHHhhh-CccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCC
Q 011516 351 LIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPR 429 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~F-G~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (484)
+.+.+|.......-++.+|+. ..++.++..++-.....+|..+ ++.+...+....++..
T Consensus 118 l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i-~~~~~~pl~~~~~~~~------------------- 177 (444)
T PRK09669 118 LLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLI-VSVIALPLVDILGKGD------------------- 177 (444)
T ss_pred HHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCc-------------------
Confidence 667777766666667888877 3466777666655555555543 3333333333222100
Q ss_pred CCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 430 VDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 430 ~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
....|+.++.+.+.++++..+++++.
T Consensus 178 --------~~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 178 --------EQKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 01258888888888887776655543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0029 Score=70.87 Aligned_cols=149 Identities=24% Similarity=0.382 Sum_probs=107.1
Q ss_pred hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc---------hhHHHHH
Q 011516 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW---------PGAMYVG 348 (484)
Q Consensus 280 slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~---------~~~l~~~ 348 (484)
.+|.++. ...+..+.-...+--++.|+++|++..++ | .+.+..++..+++.+++... ...++++
T Consensus 17 ~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~---~--tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~g 91 (654)
T TIGR00926 17 FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKF---K--TILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLG 91 (654)
T ss_pred HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---H--HHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHH
Confidence 4676654 34667777777788899999999864432 2 23445556667776654321 1236677
Q ss_pred HHHHHHHhcccccchhHHHHhhhCcc---chhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccc
Q 011516 349 TLLIGLGYGAHWAIVPAAASELFGLK---KFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFT 425 (484)
Q Consensus 349 ~~l~G~~~G~~~~l~p~i~se~FG~k---~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~ 425 (484)
..++.+|.|+.=+...+...|.|..+ .+-+.|.+-+.+..+|+. +++.+.+++.+..+
T Consensus 92 LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSl-is~~i~~~l~~~~~------------------ 152 (654)
T TIGR00926 92 LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSL-ISTIITPILRGDVG------------------ 152 (654)
T ss_pred HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc------------------
Confidence 88889999999999999999999754 477889999999889987 47788887765432
Q ss_pred cCCCCCCCCcccc-CcccHHHHHHHHHHHHHHHHHHHH
Q 011516 426 SMPRVDEPLKCEG-SICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 426 ~~~~~~~~~~C~G-~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
|.| ..||..+|.+.+++.++++++-..
T Consensus 153 ----------~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 153 ----------CFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred ----------ccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 444 358999999999888877665443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=66.95 Aligned_cols=176 Identities=18% Similarity=0.137 Sum_probs=109.1
Q ss_pred hcHHHHHHHHHHHHhhccccccccchhhHHH-hcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 249 IKADFWLIFFSLLLGSGSGLTVIDNLGQMSQ-SLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 249 ~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~-slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
.+....++...++.-... ......+.++.+ ++|.++++ .++++..+--.+ +.++|.++|++.. .+..|-+.+.+
T Consensus 24 ~~~~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i-~G~rRr~~l~~ 100 (468)
T TIGR00788 24 PRVVLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPL-FGYTKRWYLVL 100 (468)
T ss_pred cchHHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCC-CCccchHHHHH
Confidence 455666666666554444 444455566665 57998764 477777777666 6669999999952 12223334444
Q ss_pred HHHHH-HHHHHHHhcc-chhHHH-HHHHHHHHHhcccccchhHHHHhhhCccchhh---hhhHHhhhhhHHHHHHHHHHH
Q 011516 326 AQFVM-AIGHIFLGMG-WPGAMY-VGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNFLTLANPAGSLVFSGLIA 399 (484)
Q Consensus 326 ~~~l~-~~~~lll~~~-~~~~l~-~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~---~yG~~~~a~~vg~~l~~~~l~ 399 (484)
..++. ++....++.. +...+. +...+.+++.+..-...=.++.|... ++.+. +..+.+....+|.. +++.++
T Consensus 101 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~-vg~~l~ 178 (468)
T TIGR00788 101 SGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGL-ISSLLG 178 (468)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHH-HHHHHH
Confidence 44444 2333333322 212233 35678888888888888889999887 44433 33344444446665 578889
Q ss_pred HHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 400 SYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 400 G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|.+.|..+ ++..|.+++++.++..+...++
T Consensus 179 G~l~~~~~----------------------------------~~~~f~~~a~l~ll~~~~~~~~ 208 (468)
T TIGR00788 179 GPLLDKTL----------------------------------TRILFLITAALLLLQLFVSNLS 208 (468)
T ss_pred HHHHHhcC----------------------------------cchHHHHHHHHHHHHHHHHHhc
Confidence 99988765 7788999888877774444443
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=69.60 Aligned_cols=153 Identities=16% Similarity=0.245 Sum_probs=86.7
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
.|+++||.+-..+++...+--....-.+-..++ .|.+..+ ...|+.++...+...+.|+++||++.|++. +..
T Consensus 4 ~~~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~L----l~~ 79 (412)
T PF01306_consen 4 FKNKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHL----LWF 79 (412)
T ss_dssp CHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHH----HHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHH----HHH
Confidence 578899987776666555533444555555554 7888654 589999999999999999999999886532 122
Q ss_pred HHHHHHHHHHHHH-hccc--hhHHHHHHHHH----HHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFL-GMGW--PGAMYVGTLLI----GLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 325 ~~~~l~~~~~lll-~~~~--~~~l~~~~~l~----G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
+..++...+-++. ...+ ...++++.++. |+++.+..++.=+.+ |.+. |+.+-.||=.=+-..+|-.+ +..
T Consensus 80 i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~-er~s-r~~~feYG~~R~wGSig~ai-~s~ 156 (412)
T PF01306_consen 80 IAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYA-ERVS-RRNGFEYGRARMWGSIGFAI-ASL 156 (412)
T ss_dssp HHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHH-HHHH-HHHSS-HHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHH-HHHH-HHhcCCcchHHHHhhHHHHH-HHH
Confidence 2222222222221 1111 12234444443 444444444443333 3343 66666677666666666654 568
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
++|++++.+.
T Consensus 157 ~~G~L~~i~p 166 (412)
T PF01306_consen 157 LAGILFNINP 166 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HhheeeeeCc
Confidence 8999998653
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.006 Score=64.68 Aligned_cols=105 Identities=12% Similarity=0.143 Sum_probs=64.8
Q ss_pred hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc--c---h--hHHHHHHH
Q 011516 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG--W---P--GAMYVGTL 350 (484)
Q Consensus 280 slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~--~---~--~~l~~~~~ 350 (484)
.+|.+.. ...+++..+++++..+.+|+++||.++|++..|+|++.....++..+.+++... . . ..+++...
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYM 117 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHH
Confidence 4577764 358889999999999999999999988776678876555444444444433221 1 1 11334456
Q ss_pred HHHHHhcccccchhHHHHhhhC-ccchhhhhhHHh
Q 011516 351 LIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLT 384 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG-~k~~g~~yG~~~ 384 (484)
+.+++|+......-++..++-- .++..+..++-.
T Consensus 118 ~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~ 152 (448)
T PRK09848 118 GLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARG 152 (448)
T ss_pred HHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHH
Confidence 7788888776544444444332 234555544433
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=63.51 Aligned_cols=184 Identities=18% Similarity=0.208 Sum_probs=117.9
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh-HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT-HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVA 326 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~-~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~ 326 (484)
.+++.++...+..+.....-..+++..+++.+..|.++. .....+.++.|.++-++.+++-||++||. ++...
T Consensus 292 ~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~------lll~s 365 (513)
T KOG0254|consen 292 VRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK------LLLFG 365 (513)
T ss_pred hHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH------HHHHh
Confidence 455566666666666665556777888899999888754 55666788889999999999999998854 23444
Q ss_pred HHHHHHHHHHHhc------c------chhHH-HHHHHHHHHHhcccccchhH-HHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 327 QFVMAIGHIFLGM------G------WPGAM-YVGTLLIGLGYGAHWAIVPA-AASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 327 ~~l~~~~~lll~~------~------~~~~l-~~~~~l~G~~~G~~~~l~p~-i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
...+.++++++.. . ....+ .+...+.-.++...++-.|- +.+|+|..+-.++..++......+..+
T Consensus 366 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~ 445 (513)
T KOG0254|consen 366 AAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNF 445 (513)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHH
Confidence 4445555444321 1 01112 22333334466666666665 779999999999999988877766654
Q ss_pred HHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHH-HHHHhhhhhhhhh
Q 011516 393 VFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVI-LSMILVHRTTNVY 471 (484)
Q Consensus 393 l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~-l~~~l~~r~r~~~ 471 (484)
+. ...|....+. .+ ...+|.+.++.|.++.+ ........||...
T Consensus 446 ~v-----~~~~~~~~~~---------------------------~~---~~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 446 LI-----SFFFPFITEA---------------------------LG---IGGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HH-----HHHHHHHHHh---------------------------cc---ccchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 32 3333222210 01 35677888888888777 5666666677655
Q ss_pred h
Q 011516 472 S 472 (484)
Q Consensus 472 ~ 472 (484)
.
T Consensus 491 l 491 (513)
T KOG0254|consen 491 L 491 (513)
T ss_pred H
Confidence 4
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=9.3e-05 Score=78.07 Aligned_cols=146 Identities=14% Similarity=0.188 Sum_probs=102.3
Q ss_pred hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHh
Q 011516 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGY 356 (484)
Q Consensus 280 slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~ 356 (484)
..+.++. ..+-+.+.+.-.+.-.+.|++.||+.|++-+ .+...+..++.+.-.+ .....+.++-.+.|+|-
T Consensus 62 ~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~------~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGe 135 (493)
T KOG1330|consen 62 YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVI------AVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGE 135 (493)
T ss_pred hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEE------eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3444443 2355667777778889999999999886532 2333333333322222 22334667889999999
Q ss_pred cccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCcc
Q 011516 357 GAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKC 436 (484)
Q Consensus 357 G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 436 (484)
.....+.|++++|.|-..+.|..+++.+++.++|+. +|-...+++-+.++
T Consensus 136 As~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsg-lG~vvgs~va~~~~----------------------------- 185 (493)
T KOG1330|consen 136 ASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSG-LGYVVGSVVASLTF----------------------------- 185 (493)
T ss_pred hhhcccchhHhhhcCcchhhhHHHHHhhhhcccccc-eeEEeeeeeccCcc-----------------------------
Confidence 999999999999999999999999999999999987 45333333333322
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 437 EGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 437 ~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
-||.+|.+.+++.++..++..+...
T Consensus 186 ----~Wr~af~~~avl~vi~~~L~~~f~~ 210 (493)
T KOG1330|consen 186 ----WWRWAFRGSAVLGVIVGLLVFLFVR 210 (493)
T ss_pred ----ceEEEEEeehHHHHHHHHHHHhhcc
Confidence 2889999999998887777666543
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0067 Score=64.06 Aligned_cols=88 Identities=20% Similarity=0.227 Sum_probs=55.4
Q ss_pred hhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 011516 274 LGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGT 349 (484)
Q Consensus 274 ~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~ 349 (484)
++... +++|.+..+ .+.++..++..++.+.+|.++||++++|+ .+.+...+..+...+.. ..+...+++..
T Consensus 25 l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (418)
T TIGR00889 25 LGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQK-----VYAVCHFAGALLLFFAAQVTTPAGMFPVL 99 (418)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH-----HHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33344 457887654 58899999999999999999999976431 12232333333333322 34455556666
Q ss_pred HHHHHHhcccccchhHH
Q 011516 350 LLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 350 ~l~G~~~G~~~~l~p~i 366 (484)
++.|++++...++.-++
T Consensus 100 ~l~~~~~~~~~~~~~~l 116 (418)
T TIGR00889 100 LANSLAYMPTIALTNSI 116 (418)
T ss_pred HHHHHHHccHHHHHHHH
Confidence 77788777666655444
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=96.93 E-value=2.7e-05 Score=82.16 Aligned_cols=101 Identities=25% Similarity=0.375 Sum_probs=81.9
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-c---chhHHHHHHHHHHHHhcccccc
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-G---WPGAMYVGTLLIGLGYGAHWAI 362 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~---~~~~l~~~~~l~G~~~G~~~~l 362 (484)
....+...++..+|-++.|+++||+|||+.+ .+...+..++.++... . +...+.++-++.|++.|....+
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~ 122 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPAL------IISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVV 122 (451)
T ss_pred HHHHHHHHhhhcccccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccc
Confidence 3477888999999999999999999997643 3344445555555443 3 5667888899999999999999
Q ss_pred hhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 363 VPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 363 ~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
.|..+.|.-..|+.|....+...+..+|..+
T Consensus 123 ~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~ 153 (451)
T PF00083_consen 123 SPIYISEIAPPKHRGFLSSLFQLFWALGILL 153 (451)
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999998888887653
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0092 Score=64.18 Aligned_cols=156 Identities=11% Similarity=0.058 Sum_probs=98.4
Q ss_pred CHHHHhhcHHHHHHHHHHHH--hhccccccccchhhH-HHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 243 TLTQALIKADFWLIFFSLLL--GSGSGLTVIDNLGQM-SQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~--~~g~g~~~i~n~~~i-~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
..++.++++..|...+..++ ..+.+. .++.-.+ -+.+|+++.. ...+..++++.+|-.+.+.+.+|++.
T Consensus 244 ~l~~~l~~~~i~~~l~fifl~~~~~~~~--~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~---- 317 (468)
T TIGR00788 244 GLRGAIQLLEIAKPLIFIFLSYANLPGA--SGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPY---- 317 (468)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHhhcCCC--CceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCH----
Confidence 35567888998864333333 223322 2221111 1356777643 35555666666666555555433322
Q ss_pred chhHHHHHHHHHHHHHHHHHh---------c--cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhh
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG---------M--GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLA 386 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~---------~--~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a 386 (484)
...+.+..++.+++.+... . .+...+....++.++++|..+...-..+++.-..++-|+.|++....
T Consensus 318 --r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~ 395 (468)
T TIGR00788 318 --RLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASI 395 (468)
T ss_pred --HHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHH
Confidence 2234445555554443211 0 12223445678889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhh
Q 011516 387 NPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 387 ~~vg~~l~~~~l~G~iyD~~~ 407 (484)
..+|.. +++.++|.++|..|
T Consensus 396 ~~lg~~-v~~~~gg~l~~~~g 415 (468)
T TIGR00788 396 LHLGSS-VSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHH-HHHHHHHHHHHHcC
Confidence 999987 47899999999887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.024 Score=60.83 Aligned_cols=113 Identities=11% Similarity=0.098 Sum_probs=70.7
Q ss_pred hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHH-HHhcc--chh----HHHHHHH
Q 011516 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHI-FLGMG--WPG----AMYVGTL 350 (484)
Q Consensus 280 slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~l-ll~~~--~~~----~l~~~~~ 350 (484)
.+|.+.. .....+..+++++.-.++|+++||...|++-.|+|++.. ....+++.. ++..+ +.. .+.+..+
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g-~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~ 114 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG-TLANSVVLFLLFSAHLFEGTAQYVFVCVTYI 114 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh-hHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 3588765 347788899999999999999997755444457776543 344444433 33222 111 2333445
Q ss_pred HHHHHhcccccchhHHHHhhh-CccchhhhhhHHhhhhhHHHHH
Q 011516 351 LIGLGYGAHWAIVPAAASELF-GLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~F-G~k~~g~~yG~~~~a~~vg~~l 393 (484)
+.+++|-....-+-++..|+= ..++..+..++......+|+.+
T Consensus 115 l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~ 158 (473)
T PRK10429 115 LWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFV 158 (473)
T ss_pred HHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 566677666655666667765 4677888788765555566554
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.015 Score=61.09 Aligned_cols=109 Identities=18% Similarity=0.219 Sum_probs=79.6
Q ss_pred hHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh--ccc--hhHHHHHH
Q 011516 276 QMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG--MGW--PGAMYVGT 349 (484)
Q Consensus 276 ~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~--~~~--~~~l~~~~ 349 (484)
+|-++.+.++.+ .++++=.+...+-|+.-|++.||++.|+ +..+..+++.+-++.+. ... ...+++..
T Consensus 39 ~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~------~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 39 FIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRK------WTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred hhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 344677888765 4888999999999999999999998754 23444555555554433 222 23677788
Q ss_pred HHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 350 LLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 350 ~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
.+.|++-| .|++.-+.++++|.+|+.|...|+-. +.-+|..
T Consensus 113 ll~G~~Ga-sFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~a 153 (417)
T COG2223 113 LLLGLAGA-SFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVA 153 (417)
T ss_pred HHHhcccc-eehcccccccccCChhhhhHHHHHhc-cccccHH
Confidence 88888754 77777789999999999999999887 3335554
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.093 Score=56.80 Aligned_cols=151 Identities=15% Similarity=0.113 Sum_probs=87.6
Q ss_pred CCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 241 ~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
..+..++++++++....+...+.+....+..+-+......+|.+.. ....+.+.....+....+..-|+++|+
T Consensus 308 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~-~~~~~~~~~~~p~~~~~~~~~~~~gR~------ 380 (521)
T KOG0255|consen 308 KISFLDLFRTPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIY-LNFTLSGLVELPAYFRNGLLLPEFGRR------ 380 (521)
T ss_pred CCchhhhhcCHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHH-HHHHHHHHHHhhHHHHHHHHHHHhCcH------
Confidence 4568888888854333333333332212222222333334444332 122222234555556667888888663
Q ss_pred HHHHHHHHHHHHHHHHHhccc--hh--HHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHIFLGMGW--PG--AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 321 ~~l~~~~~l~~~~~lll~~~~--~~--~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
+..+....+..++.+++.... .. ...+...+..++.+..+.+.-...+|++..-..+...+.+.+...+|+.+ +|
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~-ap 459 (521)
T KOG0255|consen 381 PPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSIL-AP 459 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 244566666666666654322 22 24455555666777777777889999999888899999998888888874 55
Q ss_pred HHH
Q 011516 397 LIA 399 (484)
Q Consensus 397 ~l~ 399 (484)
.+.
T Consensus 460 ~~~ 462 (521)
T KOG0255|consen 460 LFP 462 (521)
T ss_pred HHH
Confidence 443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.039 Score=59.18 Aligned_cols=154 Identities=15% Similarity=0.211 Sum_probs=98.3
Q ss_pred HHhhcHHHHHHHHHHHHhhccccccccchhhHHHh--cCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhH
Q 011516 246 QALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS--LGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPV 321 (484)
Q Consensus 246 ~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s--lg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~ 321 (484)
..++|+.|-++.+++.+. ..+.-+.+..-.++.. +|.++.. ............+-+++..+.+|+++|+.
T Consensus 231 ~~~~Nrp~~~~l~~~l~~-~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~----- 304 (467)
T COG2211 231 LIFKNRPLLLLLLMNLLL-FIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKL----- 304 (467)
T ss_pred HHHccchHHHHHHHHHHH-HHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHH-----
Confidence 677888888877754443 3332222222222222 2333322 23333344444458889999999988642
Q ss_pred HHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhh-------CccchhhhhhHHhhhhhHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELF-------GLKKFGALYNFLTLANPAGS 391 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~F-------G~k~~g~~yG~~~~a~~vg~ 391 (484)
+.+..++.+++.+.+.+ ++...+++..++.+++.|....+..++++|.- |.|.-|..|+.+...-=+|.
T Consensus 305 -~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ 383 (467)
T COG2211 305 -FLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGL 383 (467)
T ss_pred -HHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 23445555555544332 23344556668889999999999999988865 77888999999998887887
Q ss_pred HHHHHHHHHHHHhhhh
Q 011516 392 LVFSGLIASYIYDHEA 407 (484)
Q Consensus 392 ~l~~~~l~G~iyD~~~ 407 (484)
.+ +..+.|++-+..|
T Consensus 384 al-a~~~~g~~L~~~G 398 (467)
T COG2211 384 AL-AGFIPGWILGAIG 398 (467)
T ss_pred HH-HHHHHHHHHHHcC
Confidence 74 6788899988877
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.17 Score=56.21 Aligned_cols=224 Identities=14% Similarity=0.045 Sum_probs=122.3
Q ss_pred HHHhhc-HHHHHHHHHHHHhhccccccccchhhHHHhcC-CCh-----hHHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 245 TQALIK-ADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLG-YDN-----THIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 245 ~~~l~~-~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg-~~~-----~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
.+++|+ +.|+...+..++....-....+..++.....- -+. ........+++.++|-++.|++.-+++| .
T Consensus 303 ~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~-~-- 379 (599)
T PF06609_consen 303 HRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRH-I-- 379 (599)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccc-h--
Confidence 346665 56887766555543333333345555555442 221 1234456777778888888888755533 2
Q ss_pred chhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVF 394 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~---~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~ 394 (484)
| |.+.+...++.+..-+++ .++....+...++.|++.|..-.+.-.++.-.-..++.|+.-|++...-.+|+.+
T Consensus 380 -K-w~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsI- 456 (599)
T PF06609_consen 380 -K-WQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSI- 456 (599)
T ss_pred -h-HHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHH-
Confidence 2 233333444433222222 2344556677888898888766555555555566789999999999888887775
Q ss_pred HHHHHHHHHhhhhhhccCccccc----------cc---------cCcccccCCCCC--CCCc--------cccCcccHHH
Q 011516 395 SGLIASYIYDHEAEKQHQPHHHL----------LN---------AGSIFTSMPRVD--EPLK--------CEGSICYFLT 445 (484)
Q Consensus 395 ~~~l~G~iyD~~~~~~~~~~~~~----------~~---------~~~~~~~~~~~~--~~~~--------C~G~~Cy~~~ 445 (484)
+.-++..++...-.++.+ .++. +. .+....+..-|+ ++.. =-=.+-||.+
T Consensus 457 g~aIy~~I~~n~~~~~l~-~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V 535 (599)
T PF06609_consen 457 GYAIYNAIFTNKLPKELP-KYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYV 535 (599)
T ss_pred HHHHHHHHHHhhhhHhHH-HHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666533222100 0000 00 000000000011 1100 0112468999
Q ss_pred HHHHHHHHHHHHHHHHHhh----hhhhhhhhhhh
Q 011516 446 SMIMSGLCIVAVILSMILV----HRTTNVYSHLY 475 (484)
Q Consensus 446 f~i~~~~~~~~~~l~~~l~----~r~r~~~~~~~ 475 (484)
|++.....+++++.++.+- +.+.++-..++
T Consensus 536 ~~~siaFG~vaiiaa~fl~d~~~~mt~hVa~~~~ 569 (599)
T PF06609_consen 536 YYSSIAFGVVAIIAALFLGDIDKYMTNHVAVQLE 569 (599)
T ss_pred HHHHHHHHHHHHHHHHHcCChHHhhccchhHHhh
Confidence 9999999999999999873 33444444444
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.02 Score=64.03 Aligned_cols=72 Identities=14% Similarity=0.239 Sum_probs=57.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChhH--HHHHHHHH-hhhhcccccccchhhhhhc
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNTH--IFVSMISI-WNFLGRVGGGYFSEIIVRD 314 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~~--~~VSl~si-~n~~GRl~~G~lsD~~~~~ 314 (484)
..+++++++.||...+..++..+....+...++.+.++ +|.++.. .+.++..+ ...+|.++.|+++||++.+
T Consensus 322 ~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~ 397 (633)
T TIGR00805 322 IIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLN 397 (633)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeeccc
Confidence 46789999999999999999888888888888888875 5777543 35555565 5679999999999998653
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.015 Score=61.32 Aligned_cols=162 Identities=16% Similarity=0.208 Sum_probs=106.4
Q ss_pred hHHH-hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhcc-c----h----h
Q 011516 276 QMSQ-SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMG-W----P----G 343 (484)
Q Consensus 276 ~i~~-slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~-~----~----~ 343 (484)
++++ .+|.++. .....+..+++++--.+.|.++||...|.+-.|+|.+ +...+.+++..++... + . .
T Consensus 26 ~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l-~g~i~~~~~~~llf~~~p~~~~~~~~~~ 104 (428)
T PF13347_consen 26 YFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWIL-IGAILLALSFFLLFSPPPAGLSFTAKLV 104 (428)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEee-hhhHHHHHHHHHhhccccchhhhhhHHH
Confidence 3343 3488765 3477788899999999999999954444443566654 3444445554443322 1 1 1
Q ss_pred HHHHHHHHHHHHhcccccchhHHHHhhhC-ccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCc
Q 011516 344 AMYVGTLLIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGS 422 (484)
Q Consensus 344 ~l~~~~~l~G~~~G~~~~l~p~i~se~FG-~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~ 422 (484)
.+.+..++..++|-....-+-++..|+.. .++..+..+.-.....+|..+ ...+.+.+.+..++.+.
T Consensus 105 ~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l-~~~~~~~l~~~~g~~~~----------- 172 (428)
T PF13347_consen 105 WLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLL-ASFLAPILVSWFGGGDT----------- 172 (428)
T ss_pred HHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhhhccCcc-----------
Confidence 24555666677777777766677778776 467888998888888888864 35778888877663220
Q ss_pred ccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 011516 423 IFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHR 466 (484)
Q Consensus 423 ~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r 466 (484)
..-|+....+.+++++++.+++....+.
T Consensus 173 ----------------~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 173 ----------------SNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred ----------------chHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 0248888888888888777766665444
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.055 Score=57.17 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=82.7
Q ss_pred HHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHH
Q 011516 255 LIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAI 332 (484)
Q Consensus 255 ll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~ 332 (484)
.+++.++...|+-. .-++.+.++.|++..+ .+.++..+...++..++|+++||..++++. +.+..++.++
T Consensus 9 ~~~f~~f~~~G~~~---p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~-----l~~~~l~~~~ 80 (400)
T PF03825_consen 9 LMYFLYFFAYGAFL---PYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRI-----LALLSLLSAL 80 (400)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHH-----HHHHHHHHHH
Confidence 34444445555543 3467888999998765 489999999999999999999998664332 2222232333
Q ss_pred HHHHH-hccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHH
Q 011516 333 GHIFL-GMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGS 391 (484)
Q Consensus 333 ~~lll-~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~ 391 (484)
..++. ...+...+.+..++..+.+....++.-+++.+.-+ +.+.+||-+=+-..+|-
T Consensus 81 ~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf 138 (400)
T PF03825_consen 81 ALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGF 138 (400)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHH
Confidence 22222 23445556667777888888888888888888754 45666666654444443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.19 Score=47.57 Aligned_cols=126 Identities=20% Similarity=0.277 Sum_probs=84.5
Q ss_pred chhhHHHhcCCCh----hHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-cc--chhHH
Q 011516 273 NLGQMSQSLGYDN----THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MG--WPGAM 345 (484)
Q Consensus 273 n~~~i~~slg~~~----~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~--~~~~l 345 (484)
....+..+.+.+. .....+...+...++.+..|.++|+.+|| +.. .........+.++.. .. ....+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRR----KVL--IIGLLLFLLGTLLLALAPNVGLALL 97 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccch----HHH--HHHHHHHHHHHHHHHhCccchHHHH
Confidence 3344445554443 35688888888888889999999999775 222 222211222322222 22 24456
Q ss_pred HHHHHHHHHHhcccccchhHHHHhhhCc-cchhhhhhHHhh-hhhHHHHHHHHHHHHHHHhh
Q 011516 346 YVGTLLIGLGYGAHWAIVPAAASELFGL-KKFGALYNFLTL-ANPAGSLVFSGLIASYIYDH 405 (484)
Q Consensus 346 ~~~~~l~G~~~G~~~~l~p~i~se~FG~-k~~g~~yG~~~~-a~~vg~~l~~~~l~G~iyD~ 405 (484)
.+.....|++.|........+++|.+.. ++.+..++.... ...+|.. +++.+++.+.+.
T Consensus 98 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 158 (338)
T COG0477 98 LILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLA-LGPLLAGLLLGA 158 (338)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6666668999999999999999999986 678888888888 4556655 577777778776
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.099 Score=51.73 Aligned_cols=136 Identities=17% Similarity=0.160 Sum_probs=78.1
Q ss_pred HHHHhhcccccccc--chhhHHHhcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHH
Q 011516 259 SLLLGSGSGLTVID--NLGQMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGH 334 (484)
Q Consensus 259 ~~~~~~g~g~~~i~--n~~~i~~slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~ 334 (484)
+..+...+|..|.. -.+++-+.+|+++.+. +-..-.++..+| +.+|.+.|+.+. +. .+.+..+...+|.
T Consensus 8 ~~~v~~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp-----~~-~l~iG~~~~~~GY 80 (250)
T PF06813_consen 8 SIWVQLCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGP-----WV-VLLIGAVLGFVGY 80 (250)
T ss_pred HHHHHHhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcch-----HH-HHHHHHHHHHHHH
Confidence 33444444444433 3466667789987643 444555666676 888999998864 22 3455666666676
Q ss_pred HHHh--cc-----chh-HHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 335 IFLG--MG-----WPG-AMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 335 lll~--~~-----~~~-~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
.++. .. .+. .+.+...+.|.+-+......-....+.|. +|.|+.-|++-...++++.++. .++-.++
T Consensus 81 ~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t-~i~~~~f 155 (250)
T PF06813_consen 81 GLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFT-QIYSAFF 155 (250)
T ss_pred HHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHH-HHHHHHc
Confidence 5532 21 121 22222333333322222233344557895 8999999999999888887764 3444444
|
|
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.027 Score=60.83 Aligned_cols=99 Identities=21% Similarity=0.343 Sum_probs=74.5
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHH----HhccchhHHHHHHHHHHHHhcccccch
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIF----LGMGWPGAMYVGTLLIGLGYGAHWAIV 363 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~ll----l~~~~~~~l~~~~~l~G~~~G~~~~l~ 363 (484)
..||++.+++++|-++.|+++|++|||.. +.+..++..++.++ ........+.++-++.|++.|...++.
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~------l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~ 137 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNA------LLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLV 137 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHH
Confidence 48999999999999999999999999743 22222222222222 124556788999999999999999999
Q ss_pred hHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 364 PAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 364 p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
|..+.|+=..+..|..=-+..++..+|..
T Consensus 138 pmyl~E~sP~~~RG~~g~~~~~~~~~g~l 166 (485)
T KOG0569|consen 138 PMYLTEISPKNLRGALGTLLQIGVVIGIL 166 (485)
T ss_pred HHHHhhcChhhhccHHHHHHHHHHHHHHH
Confidence 99999999888887765555566555544
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.051 Score=58.75 Aligned_cols=180 Identities=14% Similarity=0.069 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhhccccccccchhhH-HHhc-CCC--------hh----HHHHHHHHHhhhhcccccccchhhhhhccC
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYD--------NT----HIFVSMISIWNFLGRVGGGYFSEIIVRDYA 316 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i-~~sl-g~~--------~~----~~~VSl~si~n~~GRl~~G~lsD~~~~~~~ 316 (484)
+.+|.+.+..++.+..-+.+.....+. +++. +.+ +. .....++++.+. +++++-+++.|+.+
T Consensus 258 ~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~----i~s~~l~~l~~~~g 333 (477)
T TIGR01301 258 RPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLG----ITSIGMEKLCRGWG 333 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhc
Confidence 578888888888877666555444443 3332 221 11 113334444444 55555566655543
Q ss_pred C-chhHHHHHHHHHHHHHHHHHh-ccc---------------------hhHHHHHHHHHHHHhcccccchhHHHHhhhC-
Q 011516 317 Y-PRPVAMAVAQFVMAIGHIFLG-MGW---------------------PGAMYVGTLLIGLGYGAHWAIVPAAASELFG- 372 (484)
Q Consensus 317 ~-~r~~~l~~~~~l~~~~~lll~-~~~---------------------~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG- 372 (484)
- ++.|. +..++.+++++... ..+ ...+.+...++|+++....++--+++++.-.
T Consensus 334 ~~k~~~~--~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~ 411 (477)
T TIGR01301 334 AGKRLWG--IVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSN 411 (477)
T ss_pred cchhHHH--HHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccc
Confidence 2 34443 33444444433321 110 2556778889999999999999899999887
Q ss_pred -ccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHH
Q 011516 373 -LKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSG 451 (484)
Q Consensus 373 -~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~ 451 (484)
.++.|...|+...+..++-.+. ....|.+.+..|.. -..++.+.++
T Consensus 412 ~~~~~G~~mgilN~~I~lpQii~-sl~~g~~~~~~g~~--------------------------------~~~~~~~~gv 458 (477)
T TIGR01301 412 LGAGQGLSMGVLNLAIVIPQIIV-SLGSGPWDQLFGGG--------------------------------NLPAFVVGAV 458 (477)
T ss_pred cCCCCcchhhHHHHHHHHHHHHH-HHHHHHHHHHcCCC--------------------------------CeeHHHHHHH
Confidence 4688999999999998888864 56788866666521 3567888888
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 011516 452 LCIVAVILSMILVHRTTN 469 (484)
Q Consensus 452 ~~~~~~~l~~~l~~r~r~ 469 (484)
..+++.++++++.-|.++
T Consensus 459 ~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 459 AAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHhCCCCCC
Confidence 888888888887766653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.081 Score=55.46 Aligned_cols=143 Identities=14% Similarity=0.179 Sum_probs=97.4
Q ss_pred hhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh----ccchhHHHHHHHHHHHHhcccccchhHHHHhhhC
Q 011516 297 NFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG----MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFG 372 (484)
Q Consensus 297 n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~----~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG 372 (484)
=+.+-+-.|++-+|++.|++ +.+.+.+++++..++. ..+...+..+-++.|.|-|..=...-+.++.+.-
T Consensus 61 Yf~~~lpa~~~~kk~gyk~g------i~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~ 134 (422)
T COG0738 61 YFIMSLPAGLLIKKLGYKAG------IVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGK 134 (422)
T ss_pred HHHHhccHHHHHHHhhhHHH------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCC
Confidence 34566777777777777543 3566777888887763 2334456667788899999888888888888998
Q ss_pred ccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCcccc--CcccHHHHHHHH
Q 011516 373 LKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEG--SICYFLTSMIMS 450 (484)
Q Consensus 373 ~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G--~~Cy~~~f~i~~ 450 (484)
.++-+..-|++...+++|+.+ +|.+.+++.+..- .+. .+ +.....-.+ ..-.+..|++++
T Consensus 135 ~~~a~~rlnl~q~fn~lGa~~-gp~~g~~lils~~-~~~-----~~-----------~~~~~~~~~~~~~~v~~pYl~~~ 196 (422)
T COG0738 135 PESAAFRLNLAQAFNGLGAIL-GPLLGSSLILSGV-ALT-----MS-----------AAQILAIKGADASSVQFPYLILA 196 (422)
T ss_pred chhHHHHHHHHHHhhhhHHHH-HHHHHHHHHHhhh-hhc-----cC-----------HHHHHHHHHHHHHhhhhHHHHHH
Confidence 888999999999999999985 8999999998531 000 00 000000111 124888999998
Q ss_pred HHHHHHHHHHHHh
Q 011516 451 GLCIVAVILSMIL 463 (484)
Q Consensus 451 ~~~~~~~~l~~~l 463 (484)
+.+++-.+.-...
T Consensus 197 ~~lvll~v~~~~~ 209 (422)
T COG0738 197 GLLVLLAVLILLS 209 (422)
T ss_pred HHHHHHHHHHHhc
Confidence 8876655554443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.11 Score=54.55 Aligned_cols=128 Identities=16% Similarity=0.086 Sum_probs=81.9
Q ss_pred HHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH-------HHHHHHHHHhc-------cc
Q 011516 278 SQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF-------VMAIGHIFLGM-------GW 341 (484)
Q Consensus 278 ~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~-------l~~~~~lll~~-------~~ 341 (484)
..+++.+.. ..++++=-... .-|..+|+.||+...-.++.|+=.+..... ++....+++.. ..
T Consensus 7 IvEL~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~ 85 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPF 85 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccccccccc
Confidence 356777653 23444433333 459999999998761122222211222222 22222333333 11
Q ss_pred h---hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhh
Q 011516 342 P---GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 342 ~---~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
. ....+...++|+|.+..-..+-++.+|.-..|+.++.-++++.--.+|.. .+..++|.+-|...
T Consensus 86 ~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~i-v~ai~~g~lL~~~s 153 (403)
T PF03209_consen 86 WLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGII-VSAIVFGRLLDPFS 153 (403)
T ss_pred HHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHH-HHHHHHHHHccccC
Confidence 1 12445667788888888888889999999999999999999998877776 57889998887664
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.12 Score=55.40 Aligned_cols=125 Identities=14% Similarity=0.117 Sum_probs=89.4
Q ss_pred hcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc------hhHHHHHHHH
Q 011516 280 SLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW------PGAMYVGTLL 351 (484)
Q Consensus 280 slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~------~~~l~~~~~l 351 (484)
..|.++. ..+..+.-+++++.=.+.|.++||..+|++--|||++..+.-+..+..+++..++ ....++.-++
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l 121 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYML 121 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHH
Confidence 3567764 3577788899999999999999999888888899988776666666655554432 2245566778
Q ss_pred HHHHhccc----ccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 352 IGLGYGAH----WAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 352 ~G~~~G~~----~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
.+++|-.. .++.|.++.| .+...+..++=.....+|..+. ..+.+.+....++
T Consensus 122 ~~l~YT~vniPy~al~~~iT~d---~~ER~~l~s~R~~~~~~g~~l~-~~~~~plv~~~g~ 178 (467)
T COG2211 122 LGLGYTLVNIPYGALGPEITQD---PQERASLTSWRMVFASLGGLLV-AVLFPPLVKLFGG 178 (467)
T ss_pred HHHHHHheeCchhhcchhhcCC---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCC
Confidence 88888754 4566677776 3677778888777777777653 4677777766663
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.16 Score=54.46 Aligned_cols=127 Identities=10% Similarity=-0.020 Sum_probs=77.0
Q ss_pred HhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccc------hhHHHHHHH
Q 011516 279 QSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGW------PGAMYVGTL 350 (484)
Q Consensus 279 ~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~------~~~l~~~~~ 350 (484)
+.+|.++. .....+--+++++-=.+.|+++||...|.+-.|+|++.....+.....+++..+. ...+.+..+
T Consensus 38 ~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~ 117 (460)
T PRK11462 38 DIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYT 117 (460)
T ss_pred HhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHH
Confidence 34577765 3577788899999999999999998777677788876544333333333332221 122444555
Q ss_pred HHHHHhcccccchhHHHHhhhC-ccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 351 LIGLGYGAHWAIVPAAASELFG-LKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG-~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
+..++|-..-.-+-++.+|+=- .++.++..++-..+..+|..+ .+.+...+....
T Consensus 118 ~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~-~~~~~~plv~~~ 173 (460)
T PRK11462 118 LLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGML-STVLMMPLVNLI 173 (460)
T ss_pred HHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 5666666544444444444422 577788888777777776653 344444444333
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.019 Score=60.76 Aligned_cols=157 Identities=13% Similarity=0.124 Sum_probs=91.2
Q ss_pred CCCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCCh--hHHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 241 DFTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDN--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 241 ~~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
-.+.++++++.+|-++.+.+.++.|.-......+-+.....||+. +...-.+.-++..+|-+++|.+.||..+-+
T Consensus 256 ~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk--- 332 (480)
T KOG2563|consen 256 PKSIKSCFKNRQFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFK--- 332 (480)
T ss_pred HHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHH---
Confidence 347789999999999998887766665555444444445567774 334555666778999999999999985422
Q ss_pred hhHHHHHHHHHHHHH-HHHHh----ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHH
Q 011516 319 RPVAMAVAQFVMAIG-HIFLG----MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 319 r~~~l~~~~~l~~~~-~lll~----~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
.+..+. .....++ +.++. ......++....+.|++--+..++.--+-.|.=.+..=++--|++.+...+-+.+
T Consensus 333 ~~~~v~--~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~ 410 (480)
T KOG2563|consen 333 LTTLVL--YLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVI 410 (480)
T ss_pred HHHHHH--HHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHH
Confidence 221111 1111222 21111 1223456666777777665566655444444444455566667766555444443
Q ss_pred HHHHHHHHHH
Q 011516 394 FSGLIASYIY 403 (484)
Q Consensus 394 ~~~~l~G~iy 403 (484)
+ ..+-|...
T Consensus 411 ~-~~~~~~~~ 419 (480)
T KOG2563|consen 411 L-VFIMGILA 419 (480)
T ss_pred H-HHHHHHHh
Confidence 3 34444433
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.45 Score=50.11 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=102.3
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCCh--hHHHHHHHHHhhhhcccccccchhhhhhccCCch
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDN--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPR 319 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r 319 (484)
.+++...+++-..+++..+++...-.|==--+-|++ +-+|.+. ++.+-++.+.+-.+|-++.|++..+-..+ .|
T Consensus 200 a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~---~~ 276 (403)
T PF03209_consen 200 AWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGK---KR 276 (403)
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc---hH
Confidence 345556666666665555543322111100112222 2346654 34588889999999999999876632222 22
Q ss_pred hHHHHHHHHHHHHHHHHHh--ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLG--MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~--~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
...+-+.....+...+.++ ..++..+..+.+++|++.|....-.-+.+.++-..++-|..-|.-..+..++-- ++..
T Consensus 277 ~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~G-lg~~ 355 (403)
T PF03209_consen 277 TAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARG-LGTF 355 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHH-HHHH
Confidence 2222222222233333333 345667888999999999988877778888999889999888888888777765 5788
Q ss_pred HHHHHHhhhh
Q 011516 398 IASYIYDHEA 407 (484)
Q Consensus 398 l~G~iyD~~~ 407 (484)
+.|.+.|--.
T Consensus 356 ~GG~~~D~~~ 365 (403)
T PF03209_consen 356 LGGALRDLVR 365 (403)
T ss_pred HHHHHHHHHH
Confidence 9999999765
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=53.89 Aligned_cols=111 Identities=23% Similarity=0.394 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHH--hc-cch-------hHHHHHHHHHHHHhcccccchhHHHHhhhCcc---chhhhhhHHhhhhhH
Q 011516 323 MAVAQFVMAIGHIFL--GM-GWP-------GAMYVGTLLIGLGYGAHWAIVPAAASELFGLK---KFGALYNFLTLANPA 389 (484)
Q Consensus 323 l~~~~~l~~~~~lll--~~-~~~-------~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k---~~g~~yG~~~~a~~v 389 (484)
+.+..++.++|++++ +. ... ..++++-.++++|.|+.=+..+++.+|.|..+ +..+.|++-+.+.-+
T Consensus 4 I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in~ 83 (372)
T PF00854_consen 4 ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGINI 83 (372)
T ss_dssp HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHhh
Confidence 455667777888773 22 211 36889999999999999999999999999865 355677788888888
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 390 GSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 390 g~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
|+. ++..+.+++.|..| |...|.+.++..++++++-+ -.|+
T Consensus 84 G~~-~~~~~~~~i~~~~~----------------------------------~~~~f~i~~~~~~~~~~~f~----~~~~ 124 (372)
T PF00854_consen 84 GSL-FSPTLVPYIQQNYG----------------------------------WFLGFGIPAIGMLLALIVFL----SGRK 124 (372)
T ss_dssp HHH-HHHHCCCHHHHCS-----------------------------------HHHHHHHHHHHHHHHHHHHH----CCCC
T ss_pred hhH-hhcccchhhccccc----------------------------------hhhhhhHHHHHHHHHHHHHH----hCCc
Confidence 887 47777888886554 99999988877666655333 3444
Q ss_pred hhh
Q 011516 470 VYS 472 (484)
Q Consensus 470 ~~~ 472 (484)
.|+
T Consensus 125 ~y~ 127 (372)
T PF00854_consen 125 RYR 127 (372)
T ss_dssp TT-
T ss_pred CCc
Confidence 454
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.47 Score=51.98 Aligned_cols=146 Identities=18% Similarity=0.222 Sum_probs=72.4
Q ss_pred HHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHH-H
Q 011516 255 LIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFV-M 330 (484)
Q Consensus 255 ll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l-~ 330 (484)
++.+.+++...+++.+=--+..+..- +|.+.. +..++++-.+-++|-.++|.+.++..++ ....-+...+ .
T Consensus 18 ~l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~-----~~~~e~~i~l~~ 92 (521)
T PRK03612 18 LLLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAG-----FVAVELLLALLG 92 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-----HHHHHHHHHHHH
Confidence 34455556666666654444444432 354432 3466666656666665555554322221 1111111111 1
Q ss_pred HHHH-HHHh-cc----chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH-
Q 011516 331 AIGH-IFLG-MG----WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY- 403 (484)
Q Consensus 331 ~~~~-lll~-~~----~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy- 403 (484)
.++. ++.. .. ....++...++.++..|+.+++..-+..+. ..++.|.+.|-++.+..+|+. +|+.++|.+-
T Consensus 93 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~~Pl~~~~~~~~-~~~~~g~~~g~ly~~ntlGa~-~G~l~~~~vLl 170 (521)
T PRK03612 93 GLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGMEIPLLMRILQRI-RDQHLGHNVATVLAADYLGAL-VGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchhhhhhhhHhHHhHHHH-HHHHHHHHHHH
Confidence 1111 1111 11 112234455677888888866655544442 224577777777777778876 4777777544
Q ss_pred hhhh
Q 011516 404 DHEA 407 (484)
Q Consensus 404 D~~~ 407 (484)
..-|
T Consensus 171 p~lG 174 (521)
T PRK03612 171 PRLG 174 (521)
T ss_pred Hhcc
Confidence 3444
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.31 Score=44.71 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=63.9
Q ss_pred HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHH
Q 011516 289 FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAAS 368 (484)
Q Consensus 289 ~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~s 368 (484)
+-..+.+++ ++.+.+-++++.|+ .+++..+..++-...+...+...++.++++.|++.+..|......+.
T Consensus 46 ~Y~~~~~s~----l~~P~iv~~lg~K~------sm~lg~~~y~~y~~~~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt 115 (156)
T PF05978_consen 46 LYGSFAISC----LFAPSIVNKLGPKW------SMILGSLGYAIYIASFFYPNSYTLYPASALLGFGAALLWTAQGTYLT 115 (156)
T ss_pred HHHHHHHHH----HhHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHH
Confidence 333444444 44566777777653 34444443333222333456678899999999999999999999998
Q ss_pred hhhCccchhhhhhHHhhhhhHHHH
Q 011516 369 ELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 369 e~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
+.--.++.++|.|+-+.....+..
T Consensus 116 ~~s~~~~~~~~~~ifw~i~~~s~i 139 (156)
T PF05978_consen 116 SYSTEETIGRNTGIFWAIFQSSLI 139 (156)
T ss_pred HcCCHHHHhhHHHHHHHHHHHHHH
Confidence 888888888888877666655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.2 Score=46.14 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=72.5
Q ss_pred hHHHhcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 011516 276 QMSQSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIG 353 (484)
Q Consensus 276 ~i~~slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G 353 (484)
..+++.|+++.++ +...--..+.+-..+.|.+.||+|||+.. .+-.++-.+++++-...+...|+++-++-|
T Consensus 59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~c------l~~cily~~scl~k~~~~~~~L~~GRvlgG 132 (354)
T PF05631_consen 59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKAC------LLFCILYSLSCLTKHSSNYPVLLLGRVLGG 132 (354)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHH------HHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3456778876532 22222233444556678899999997532 222334444555555677778999999999
Q ss_pred HHhcccccchhHH-HHh----hhCccchhhhhhHHh-hhhhHHHHHHHHHHHHHHHhhhh
Q 011516 354 LGYGAHWAIVPAA-ASE----LFGLKKFGALYNFLT-LANPAGSLVFSGLIASYIYDHEA 407 (484)
Q Consensus 354 ~~~G~~~~l~p~i-~se----~FG~k~~g~~yG~~~-~a~~vg~~l~~~~l~G~iyD~~~ 407 (484)
++.-..++.+=+- +.| -|..+..+..++.+. ..+.+-++ .+..++-...|..+
T Consensus 133 iaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI-~aGv~a~~l~~~~~ 191 (354)
T PF05631_consen 133 IATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAI-GAGVVANVLADWFG 191 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHH-HHhHHHHHHHHHhC
Confidence 9999888877663 333 234444555666555 44443333 23344434444443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.64 Score=49.79 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH-HHHHHHHHHH-hc----------cchhHHHHHHHHHHHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ-FVMAIGHIFL-GM----------GWPGAMYVGTLLIGLG 355 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~-~l~~~~~lll-~~----------~~~~~l~~~~~l~G~~ 355 (484)
..+.++.+++++||.+..+.. +-.++ +| ++...+. =+..+-.+++ .. .+....++..++.|+.
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~---~~-~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDED---SR-WLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCC---cc-chHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 588899999999999776542 11111 12 1111111 1111222111 11 2333455678899998
Q ss_pred hcccccchhHHHHhhhCccchhhhhhHHhhhhhHH
Q 011516 356 YGAHWAIVPAAASELFGLKKFGALYNFLTLANPAG 390 (484)
Q Consensus 356 ~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg 390 (484)
+|-..++.-....+..-.++.-..-+++..+-.+|
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~G 420 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVG 420 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 88766665544455544444544555555444444
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=13 Score=40.61 Aligned_cols=106 Identities=14% Similarity=0.029 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhcccccccchhhhhhccCCc-hhHHHHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHH
Q 011516 287 HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP-RPVAMAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLG 355 (484)
Q Consensus 287 ~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~-r~~~l~~~~~l~~~~~lll~~----------~~~~~l~~~~~l~G~~ 355 (484)
+.+-|+..++-.+.-.+.+++-.+..|+++-| .+.=..+..++++++.+++.. .++.++.+..++..++
T Consensus 311 ~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~g 390 (493)
T PRK15462 311 AMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFA 390 (493)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHH
Confidence 34456666666655555555655664433222 222245566666677655421 1344567777888888
Q ss_pred hcccccchhHHHHhhhCccchhhhhhHHhhhh-hHHHH
Q 011516 356 YGAHWAIVPAAASELFGLKKFGALYNFLTLAN-PAGSL 392 (484)
Q Consensus 356 ~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~-~vg~~ 392 (484)
.=..-++.-+.++++-..|..|...|.-+++. .+|..
T Consensus 391 El~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~ 428 (493)
T PRK15462 391 ELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANY 428 (493)
T ss_pred HHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899999999998888888888876643 45554
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.5 Score=46.75 Aligned_cols=149 Identities=21% Similarity=0.277 Sum_probs=85.6
Q ss_pred HhcCCChhHH--HHHHHHHhhhhcccccccchhhhhhccCC-chhHHHHHHHHHHHHHHHHHh---c--cchhHHHHHHH
Q 011516 279 QSLGYDNTHI--FVSMISIWNFLGRVGGGYFSEIIVRDYAY-PRPVAMAVAQFVMAIGHIFLG---M--GWPGAMYVGTL 350 (484)
Q Consensus 279 ~slg~~~~~~--~VSl~si~n~~GRl~~G~lsD~~~~~~~~-~r~~~l~~~~~l~~~~~lll~---~--~~~~~l~~~~~ 350 (484)
+++|.++++. +.++.++ =..-+.+.|.+||.+-- .+. .|++ +++..++..++.+.++ . .+.....+...
T Consensus 18 ~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi-~G~rr~~Y-~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~ 94 (433)
T PF03092_consen 18 DDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPI-FGYRRKPY-MIIGWLLGAVSALVLALLPASESSAAIAVVLLF 94 (433)
T ss_pred HHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccc-cCCcchHH-HHHHHHHHHHHHHHHHhcccccchhhhHHHHHH
Confidence 4678887643 3333222 23668999999998631 111 2333 3444444433333222 1 12233444555
Q ss_pred HHHHHhcccccchhHHHHhhhC--ccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCC
Q 011516 351 LIGLGYGAHWAIVPAAASELFG--LKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMP 428 (484)
Q Consensus 351 l~G~~~G~~~~l~p~i~se~FG--~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~ 428 (484)
+..+|+...-.+.=+++.|.=- .+..|..-..++..-.+|+.+ +..+.|..+|..+
T Consensus 95 la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv-~~~l~G~l~~~~~--------------------- 152 (433)
T PF03092_consen 95 LASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLV-GSLLSGPLLDSFG--------------------- 152 (433)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCC---------------------
Confidence 6666666666666667777642 122455666666666777764 6678888888765
Q ss_pred CCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 429 RVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 429 ~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
++..|.+.+.+.++..+.++.+..
T Consensus 153 -------------~~~~f~i~~~~~~l~~~~~~~~~~ 176 (433)
T PF03092_consen 153 -------------PQGVFLISAALPLLMLIVALFLLE 176 (433)
T ss_pred -------------CeEEehHHHHHHHHHHHHHHHhhh
Confidence 455677777777777666666554
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=90.80 E-value=3.8 Score=44.46 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=51.5
Q ss_pred hhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccc
Q 011516 297 NFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK 375 (484)
Q Consensus 297 n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~ 375 (484)
+++.-+..|++-.++.+ ... +.+.+..++.+..++++. .++...-|++.++++..|.....+...-++.---.+.
T Consensus 311 ga~~a~~ag~~~~~w~~---~~~-l~l~v~s~~~~gll~~m~~t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~~ 386 (511)
T TIGR00806 311 GAITSFIAGFVNIRWAR---WSK-LLIAVVSAIQAGLVFWMSQSHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKEL 386 (511)
T ss_pred HHHHHHHHHhhcCCchh---hHH-HHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34555667776433311 111 223333333332233333 3456678889999999999998888888888877777
Q ss_pred hhhhhhHHh
Q 011516 376 FGALYNFLT 384 (484)
Q Consensus 376 ~g~~yG~~~ 384 (484)
||-.+|+=+
T Consensus 387 ~aLvFGiNt 395 (511)
T TIGR00806 387 CALVFGINT 395 (511)
T ss_pred eEEEEecHH
Confidence 777777743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.02 E-value=2.3 Score=45.90 Aligned_cols=126 Identities=14% Similarity=0.204 Sum_probs=80.9
Q ss_pred HHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH--HhcccccchhHHHHhh
Q 011516 293 ISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGL--GYGAHWAIVPAAASEL 370 (484)
Q Consensus 293 ~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~--~~G~~~~l~p~i~se~ 370 (484)
.++..++--...|.+||+++||.-. .+......+.-+.+.+.. .++++ +.|+ ++++.++..-+.++|.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L------~~~~~~~~l~~~~~~~~~-~~~~~---~~~l~g~~~~~~s~~~a~vadi 140 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVL------LLPLFGTILPALCLLFQG-YWFFL---LLGLSGGFSAIFSVGFAYVADI 140 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhH------HHHHHHHHHhHHHHHHHH-HHHhh---hcccccchhhhhhhhhhheeec
Confidence 3455666678899999999996422 222222222222222211 12221 4444 5556666666778888
Q ss_pred hCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHH
Q 011516 371 FGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMS 450 (484)
Q Consensus 371 FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~ 450 (484)
=-.+++..-||++.....++..+ +|.+.+++....+ |-.+|.+.+
T Consensus 141 s~~~~R~~~~gll~~~~~~~~~~-~p~~~~~~~~~~~----------------------------------~a~~f~ia~ 185 (463)
T KOG2816|consen 141 SSEEERSSSIGLLSGTFGAGLVI-GPALGGYLVKFLG----------------------------------IALVFLIAA 185 (463)
T ss_pred cchhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHhcC----------------------------------chHHHHHHH
Confidence 88889999999999877777764 7788887776643 677888888
Q ss_pred HHHHHHHHHHHHh
Q 011516 451 GLCIVAVILSMIL 463 (484)
Q Consensus 451 ~~~~~~~~l~~~l 463 (484)
+..+++.+-.+..
T Consensus 186 ~~~~~~~~y~~~~ 198 (463)
T KOG2816|consen 186 ASGILSLLYMLLF 198 (463)
T ss_pred HHHHHHHHHHhhc
Confidence 8877777655543
|
|
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.90 E-value=28 Score=37.68 Aligned_cols=120 Identities=13% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCChh--HHHHHHHHHhhhhcccccc-cchhhhhhccCCchhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcc
Q 011516 282 GYDNT--HIFVSMISIWNFLGRVGGG-YFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGA 358 (484)
Q Consensus 282 g~~~~--~~~VSl~si~n~~GRl~~G-~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~ 358 (484)
|.++. ..+.++.++.+.++-++.. .++-.++.++ .+.+.+....+..+++++......+.....++...+.
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~------~i~lGl~~~~~~~~~~af~~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKR------LISLGLLSEFLQLLLFAFATETWMMFAAGVVVALAGI 346 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh------HhhHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Confidence 44443 3477777777788777777 5554444432 3455666666777777776654554455555555666
Q ss_pred cccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhh
Q 011516 359 HWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAE 408 (484)
Q Consensus 359 ~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~ 408 (484)
....+-++++.+-+.+..|++++++...-.+.+. ++|.+++.+|-.+-+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~-~~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGV-VSPALYGNIFALTLD 395 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhh-hhHHHHHHHHHHHHH
Confidence 7777778999999999999999999999988887 478999999988764
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=89.40 E-value=0.89 Score=38.34 Aligned_cols=59 Identities=17% Similarity=0.276 Sum_probs=44.2
Q ss_pred chhHHHHHhhcCcccchhhhhHhHhhhCC-CCCCchhhhhhhhhhhhHHHHHHHHHHhcC
Q 011516 2 QMCILIFVGNNGETYFNTAALVSCVQNFP-KSRGPVVGILKGFAGLGGAILTQVYTMIHA 60 (484)
Q Consensus 2 ~~c~~~~l~~~g~~~~~ta~l~t~~~nFP-~~RG~v~gl~k~~~GLSaai~s~i~~~~f~ 60 (484)
.+.+..++.+.+.+..++.......+.+| ++||.+.++......+++.+-..+.....+
T Consensus 53 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 112 (141)
T TIGR00880 53 VLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQ 112 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc
Confidence 34455666777777666666677788898 579999999999888888877777666653
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=86.30 E-value=3.7 Score=41.55 Aligned_cols=64 Identities=9% Similarity=-0.018 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhh
Q 011516 342 PGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHE 406 (484)
Q Consensus 342 ~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~ 406 (484)
...+.++.+++|.|.+..-...-+.++++...|+.++.-|+....+++|+. ++|.+++.+....
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~-~gP~i~~~~i~~~ 73 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTT-VAPLFGGSLILSG 73 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHH-HHHHHHHHHHhcC
Confidence 345667888999999999999999999999999999999999999999998 5999999888543
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.23 E-value=11 Score=39.78 Aligned_cols=94 Identities=17% Similarity=0.159 Sum_probs=60.5
Q ss_pred HHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhh
Q 011516 292 MISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASEL 370 (484)
Q Consensus 292 l~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~ 370 (484)
..-..-.+|-..||.++|+++||+...- +....++...+-. .++...+.+.-.++|++.|+ .+...++-.|
T Consensus 121 ~v~~gmllga~~w~l~~d~~grr~~f~~------T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle- 192 (528)
T KOG0253|consen 121 SVFLGMLVGAMVWGLSADTIGRRKGFNL------TFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLE- 192 (528)
T ss_pred HHHhhhhhhhhhhheehhhhhcchhhhh------hHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHH-
Confidence 3334455778899999999999875432 2223333222222 34456788888899999998 6666555554
Q ss_pred hCccchhhhhhHHhhhhhHHHHH
Q 011516 371 FGLKKFGALYNFLTLANPAGSLV 393 (484)
Q Consensus 371 FG~k~~g~~yG~~~~a~~vg~~l 393 (484)
|+...-..-+-++...+.+|...
T Consensus 193 ~lp~~~r~~~~V~~~~waig~v~ 215 (528)
T KOG0253|consen 193 FLPSSHRWLLTVMSFFWAIGQVF 215 (528)
T ss_pred hccCcCCCcchhHHHHHHHHHHH
Confidence 55555555667777778888764
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.21 E-value=13 Score=40.46 Aligned_cols=184 Identities=15% Similarity=0.160 Sum_probs=110.0
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhc--CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSL--GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~sl--g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
.|+..+..++.....-.+....-++.+++ +-++. ...++..+++-+++-+..|+=+-|.++- .+| +.+..+
T Consensus 36 i~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~---k~P--li~s~i 110 (488)
T KOG2325|consen 36 IYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSV---KKP--LIVSFL 110 (488)
T ss_pred HHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCc---ccC--HHHHHH
Confidence 34444444444333333444455556653 33332 3488889999999999999888766542 233 466777
Q ss_pred HHHHHHHHH-h---c-c-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHH
Q 011516 329 VMAIGHIFL-G---M-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYI 402 (484)
Q Consensus 329 l~~~~~lll-~---~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~i 402 (484)
++++|+++. + . . ..+.+.++-++.|+|.|....+--.++..-. .++..+.+.....+..+|.. +|| ..+.+
T Consensus 111 i~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~-~~dR~rA~a~~~~~~vlg~i-lGp-~~q~~ 187 (488)
T KOG2325|consen 111 IAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADAST-VEDRPRAFAATSGGFVLGII-LGP-TIQLA 187 (488)
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccC-ccchHHHHHHhhhHHHHHHH-HhH-HHHHH
Confidence 888888775 2 1 2 3345667889999999866655544433333 46777777777776666655 453 55555
Q ss_pred HhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 403 YDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 403 yD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
..--+++.. .+.+ + .--+=|..+=++++.++++.++.-....
T Consensus 188 f~~Lg~~G~-------------~i~~--~-----~~~n~YTap~w~m~i~~i~~~v~i~~~f 229 (488)
T KOG2325|consen 188 FTPLGEKGF-------------MILP--G-----LIFNMYTAPAWLMAILWIIYIVIILFFF 229 (488)
T ss_pred HhhhcCCce-------------EEcC--c-----ceEEecchHHHHHHHHHHHHHHHHHhhe
Confidence 554443220 0000 0 0112488888899989888777655543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=85.18 E-value=45 Score=35.51 Aligned_cols=133 Identities=11% Similarity=0.126 Sum_probs=71.1
Q ss_pred HHHHhhcH--HHHHHHHHHHHhhccccccccchhhHH-HhcCCCh-h----HHHHHHHHHhhhhcccccccchhhhhhcc
Q 011516 244 LTQALIKA--DFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDN-T----HIFVSMISIWNFLGRVGGGYFSEIIVRDY 315 (484)
Q Consensus 244 ~~~~l~~~--~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~-~----~~~VSl~si~n~~GRl~~G~lsD~~~~~~ 315 (484)
+++..+++ -.|-+|+++..+. ...+.|-.|.. ++..-++ . ...-++..+.++++-+..|++..++.+.
T Consensus 240 ~~~~y~~~~ll~WSlWWa~atcg---y~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~- 315 (412)
T PF01770_consen 240 FKSCYSNPRLLLWSLWWAFATCG---YYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRW- 315 (412)
T ss_pred HHHHhcCchHHHHHHHHHHHHhH---HHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHH-
Confidence 44454444 5788998886542 22222222222 3331111 0 1233344455666777788874444331
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHH
Q 011516 316 AYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL 383 (484)
Q Consensus 316 ~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~ 383 (484)
. .+.+.+..++.+..++++.. ++....|++.++++..|-....+.-.-++.---.+.||-.+|+=
T Consensus 316 --~-~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiN 381 (412)
T PF01770_consen 316 --G-ELALGVFSLLQAGLLFLMSFTGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEERYALVFGIN 381 (412)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeeeH
Confidence 1 12334444444444444443 45566788888888888887777766666666666666666553
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.72 E-value=1.4 Score=48.13 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=91.2
Q ss_pred HhcCCChhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhc
Q 011516 279 QSLGYDNTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYG 357 (484)
Q Consensus 279 ~slg~~~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G 357 (484)
|+.|..+. +..+.++-+..|-+..=++|=|+.+|.+-.| ++.+.+....+-++.+.. .+++.....=++-|+.+|
T Consensus 399 ed~~~~~~--LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~--v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~a 474 (618)
T KOG3762|consen 399 EDLGGIKT--LFGVVSALCHAGEILFYFFSFKLIEKIGHVN--VMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHA 474 (618)
T ss_pred hhcCCcce--eeeehhhhhccchHHHHHHHHHHHHHhcccc--eeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHH
Confidence 56653322 2233444444555443333333333322122 223333333333444443 345444445688999999
Q ss_pred ccccchhHHHHhhhCccchhhhhhHHhhh-hhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCcc
Q 011516 358 AHWAIVPAAASELFGLKKFGALYNFLTLA-NPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKC 436 (484)
Q Consensus 358 ~~~~l~p~i~se~FG~k~~g~~yG~~~~a-~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C 436 (484)
..|..+.+-++..-.++--.+.-|++... .++|-- +|.+++|.+..+.+
T Consensus 475 liWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g-~GslIGG~~v~~fg----------------------------- 524 (618)
T KOG3762|consen 475 LIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKG-LGSLIGGFVVERFG----------------------------- 524 (618)
T ss_pred HHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcc-hhhhhhhhhheeeh-----------------------------
Confidence 99999999999999999889998887644 355544 47778888887776
Q ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHhhhh
Q 011516 437 EGSICYFLTSMIMSGLCIVAVILSMILVHR 466 (484)
Q Consensus 437 ~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r 466 (484)
-+.+|.+.+..|++.+++-..+.++
T Consensus 525 -----~~ttf~~~giAcl~~l~~~~~iq~~ 549 (618)
T KOG3762|consen 525 -----ARTTFRIFGIACLVTLALFISIQLL 549 (618)
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4678888888888777666554433
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=84.42 E-value=1.6 Score=35.02 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=36.8
Q ss_pred cccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhcc
Q 011516 270 VIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDY 315 (484)
Q Consensus 270 ~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~ 315 (484)
+..-++-+.+++|++..+ .+.++.-+...++..++|++.||.++++
T Consensus 19 ~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~ 66 (77)
T PF12832_consen 19 LYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRK 66 (77)
T ss_pred HHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccH
Confidence 344556677889998764 4788888889999999999999998854
|
|
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.06 E-value=1.3 Score=44.77 Aligned_cols=149 Identities=20% Similarity=0.256 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhccccccccchhhHHH-h--cCCC--h--hHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 252 DFWLIFFSLLLGSGSGLTVIDNLGQMSQ-S--LGYD--N--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 252 ~FWll~~~~~~~~g~g~~~i~n~~~i~~-s--lg~~--~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
+|-.+.++.+++.|+-..+ ..+.-.| + ++.+ . -..+-|++|.=|.+--++.|++-||... + | |-..
T Consensus 42 r~m~lv~mc~lgfgsyfcy--d~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fg---i-r-~gti 114 (459)
T KOG4686|consen 42 RFMALVFMCLLGFGSYFCY--DAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFG---I-R-LGTI 114 (459)
T ss_pred HHHHHHHHHHhcccceeec--CCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhh---h-h-HHHH
Confidence 5666666666666665554 2222222 2 2222 1 1347889999999999999999997532 1 1 1223
Q ss_pred HHHHHHHHHHHHHhccc-h---hHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFLGMGW-P---GAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 325 ~~~~l~~~~~lll~~~~-~---~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
+...+.++|+++++.+. . .....+-+++|+|-=.....--..+.-+|--|..+-.+|+-....-+|+- .|=.+.+
T Consensus 115 i~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst-vNf~lm~ 193 (459)
T KOG4686|consen 115 ILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST-VNFLLMP 193 (459)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhce-eeeeecH
Confidence 44556678898887543 2 23445667777766555555666677788889999999999888889987 4778899
Q ss_pred HHHhhhhh
Q 011516 401 YIYDHEAE 408 (484)
Q Consensus 401 ~iyD~~~~ 408 (484)
++||.-+.
T Consensus 194 ~ly~~~~~ 201 (459)
T KOG4686|consen 194 FLYDTMGR 201 (459)
T ss_pred HHHHHHHH
Confidence 99998873
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.66 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.53 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.17 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.14 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.14 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.12 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.02 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.02 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.99 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.93 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.68 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.6 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.44 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.32 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=155.68 Aligned_cols=185 Identities=18% Similarity=0.153 Sum_probs=145.7
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhh--hhccCCc
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEII--VRDYAYP 318 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~--~~~~~~~ 318 (484)
.++.++++.+|.+.+..++......++....+.+.++ +|.++. ....++.++++.+|+++.|+++||+ ++|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~--- 321 (451)
T 1pw4_A 245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRG--- 321 (451)
T ss_dssp HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHH---
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---
Confidence 5778899999999999888877777777778888877 688764 4588889999999999999999998 5532
Q ss_pred hhHHHHHHHHHHH-HHHHHHhcc---chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhH-HHHH
Q 011516 319 RPVAMAVAQFVMA-IGHIFLGMG---WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPA-GSLV 393 (484)
Q Consensus 319 r~~~l~~~~~l~~-~~~lll~~~---~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~v-g~~l 393 (484)
. +.+...+.. ++.+++... +...+.+..++.|++++..+.....++.|.++.++.|+.+|+......+ |..
T Consensus 322 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~- 397 (451)
T 1pw4_A 322 --A-TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV- 397 (451)
T ss_dssp --H-HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH-
T ss_pred --h-HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH-
Confidence 2 222223323 455544432 3445667778889999988888889999999999999999999999888 887
Q ss_pred HHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 011516 394 FSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTN 469 (484)
Q Consensus 394 ~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~ 469 (484)
+++.+.|.++|..+ |+..|.+.+++++++.++.+++..+.++
T Consensus 398 ~~~~~~g~l~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
T 1pw4_A 398 AASAIVGYTVDFFG----------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKR 439 (451)
T ss_dssp HHHHHHHHHHHSSC----------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC----------------------------------cHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 58999999999765 8999999999999988887776544443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-13 Score=142.09 Aligned_cols=156 Identities=9% Similarity=0.105 Sum_probs=119.7
Q ss_pred CHHHHhhcHHHHHHHHHHHHhhccccccccchhhH-HHhc-CCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 243 TLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQM-SQSL-GYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 243 t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i-~~sl-g~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
+.++.+|++.+|...+..++..+....+...++.+ .++. |.++. ....++..++..+|+++.|+++||+++|+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~--- 326 (438)
T 3o7q_A 250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHK--- 326 (438)
T ss_dssp HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH---
T ss_pred hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---
Confidence 34678899999999999998888877787888888 7776 87764 45788889999999999999999998753
Q ss_pred hhHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLGMGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.+.+...+..++.+++...+.....+..++.|++++..++.....+.|.++.+ .++..++.... .+|.. ++|.+
T Consensus 327 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~g~~-~~~~~ 400 (438)
T 3o7q_A 327 ---VLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVMT-IIGGG-IVTPV 400 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHHHT-THHHH-HHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHH-HHHHH-HHHHH
Confidence 23334444455554444443334455668899999999999999989999854 77777777744 47776 58999
Q ss_pred HHHHHhhhh
Q 011516 399 ASYIYDHEA 407 (484)
Q Consensus 399 ~G~iyD~~~ 407 (484)
.|+++|..|
T Consensus 401 ~g~l~~~~g 409 (438)
T 3o7q_A 401 MGFVSDAAG 409 (438)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999886
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-10 Score=119.31 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHh------cCCChh--HHHHHHHHHhhhhcccccccchhh-hhhccCCchhH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS------LGYDNT--HIFVSMISIWNFLGRVGGGYFSEI-IVRDYAYPRPV 321 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~s------lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~-~~~~~~~~r~~ 321 (484)
+.+|.+++..++.......+...++.+.++ +|.+.. ....++..++..++.+.+|+++|| ++||+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~------ 86 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARP------ 86 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHH------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchH------
Confidence 467888877777666555565666666654 788764 458899999999999999999999 88854
Q ss_pred HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccc--hhhhhhHHhhhhhHHHHHHHHHH
Q 011516 322 AMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKK--FGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 322 ~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~--~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.+.+..++.+++.++++. .+...+++..++.|++.|..++..+++++|+|..++ .++.+++...+..+|.. ++|.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~~~~~ 165 (491)
T 4aps_A 87 AVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF-IAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHH-HHHHH
Confidence 234455566666665554 456678889999999999999999999999999888 88899999899999987 58999
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVH 465 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~ 465 (484)
.|.+.|..+ |+..|.+.+..++++.++.++...
T Consensus 166 ~~~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~~~~ 198 (491)
T 4aps_A 166 VGAAQEAAG----------------------------------YHVAFSLAAIGMFIGLLVYYFGGK 198 (491)
T ss_dssp HHHHHHHSC----------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhh----------------------------------HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999998765 999999998888777776655433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.14 E-value=8e-10 Score=115.40 Aligned_cols=183 Identities=11% Similarity=0.061 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhhccccccccchhhHHHh-cCCC--hhHHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHH
Q 011516 251 ADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYD--NTHIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQ 327 (484)
Q Consensus 251 ~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~--~~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~ 327 (484)
..+|.+++..++...........++.+.++ .+.+ +.....++.++...++..+.|+++||++||+... .+.+.+..
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~-~~~~~~~~ 361 (491)
T 4aps_A 283 VSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSS-PTKFAVGL 361 (491)
T ss_dssp TTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---C-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCc-hHHHHHHH
Confidence 345555544444444444444555666655 3443 2345667778888889999999999999875332 23334445
Q ss_pred HHHHHHHHHHhc----------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHH
Q 011516 328 FVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGL 397 (484)
Q Consensus 328 ~l~~~~~lll~~----------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~ 397 (484)
.+.+++.+++.. .+...+.+..++.|++.+...+.....+.|.++.++.|+..|+..+...+|..+ ++.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i-~~~ 440 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSAL-NAQ 440 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 555555444322 134456778889999999999999999999999999999999999999898874 788
Q ss_pred HHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011516 398 IASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 470 (484)
Q Consensus 398 l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~ 470 (484)
+.|.+.|.. |...|.+.+++++++.++.+++..+.|+.
T Consensus 441 ~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (491)
T 4aps_A 441 LVTLYNAKS-----------------------------------EVAYFSYFGLGSVVLGIVLVFLSKRIQGL 478 (491)
T ss_dssp HGGGGGGSS-----------------------------------TTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred HHHHHhccc-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877766431 56788888888888877776655554443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-11 Score=119.65 Aligned_cols=155 Identities=14% Similarity=0.076 Sum_probs=115.5
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchh
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRP 320 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~ 320 (484)
.++.+|++.+|.+.+..++.......+....+.+.++ +|.++. ....++.+++..+|+++.|+++||.++ +.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~-----~~ 266 (375)
T 2gfp_A 192 YKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST-----LM 266 (375)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH-----HH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 3568899999999998888777766676777777766 676653 357788889999999999999998865 11
Q ss_pred HHHHHHHHHHHHHHH--HHhc---cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 321 VAMAVAQFVMAIGHI--FLGM---GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 321 ~~l~~~~~l~~~~~l--ll~~---~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
. .... .....+.+ .+.. .+...+++..++.|+++|..++.....+.|.++ ++.|+.+|+......+|.. ++
T Consensus 267 ~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~-~~ 342 (375)
T 2gfp_A 267 W-QSVI-CCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSG-VL 342 (375)
T ss_dssp H-HHHH-HHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHH-CC
T ss_pred H-HHHH-HHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHH-HH
Confidence 1 1111 11112211 1111 133445677889999999999999999999998 9999999999999999988 47
Q ss_pred HHHHHHHHhhhh
Q 011516 396 GLIASYIYDHEA 407 (484)
Q Consensus 396 ~~l~G~iyD~~~ 407 (484)
+.+.|.++|..+
T Consensus 343 ~~~~g~l~~~~~ 354 (375)
T 2gfp_A 343 ASLSAMLPQTGQ 354 (375)
T ss_dssp STTCTHHHHHHH
T ss_pred HHHHHHHhcCCc
Confidence 899999998665
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=2e-10 Score=118.01 Aligned_cols=176 Identities=15% Similarity=0.098 Sum_probs=136.2
Q ss_pred hhcHHHHHHHHHHHHhhccccccccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAV 325 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~ 325 (484)
.+.+.++.+++..++......++...++.+.+++ .++. ....++..+...++.+.+|+++||++||+ .+.+
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~------~l~~ 97 (451)
T 1pw4_A 25 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPA 97 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchH------HHHH
Confidence 3455667777766666555455555667777777 6643 46889999999999999999999999864 3445
Q ss_pred HHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHH
Q 011516 326 AQFVMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIAS 400 (484)
Q Consensus 326 ~~~l~~~~~lll~~-----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G 400 (484)
...+.+++.++++. .+...+++..++.|++.|..++...++++|++..|+.++..|+...+..+|.. +++.++|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~ 176 (451)
T 1pw4_A 98 GLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFL 176 (451)
T ss_dssp HHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 55555666555433 45567888999999999999999999999999999999999999999999987 5889999
Q ss_pred HHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 401 YIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 401 ~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
.+.+..+ .||.+|.+.+.++++..++..+..
T Consensus 177 ~l~~~~g---------------------------------~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 177 LGMAWFN---------------------------------DWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHTC---------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhc---------------------------------cHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9886553 278889999888877766655543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-10 Score=113.18 Aligned_cols=167 Identities=11% Similarity=0.133 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMA 331 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~ 331 (484)
+++++..++......++...++.+.+++|.++.+ ...++..+...++.+.+|+++||++||+.+ .+...+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~------~~~~~~~~ 76 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI------LVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH------HHHHHHHH
Confidence 3444555554444445556677788888887653 588999999999999999999999987643 23333444
Q ss_pred HHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHhhhhhhc
Q 011516 332 IGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYDHEAEKQ 410 (484)
Q Consensus 332 ~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD~~~~~~ 410 (484)
++.+++. .++...+++..++.|++.|...+....++.|.+..|+.++.+++......+|.. ++|.++|.+.|..+
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~--- 152 (375)
T 2gfp_A 77 LATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL-LAPLIGGLLDTMWN--- 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHH-HHHHHHHHSSCHHH---
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHhcc---
Confidence 4444433 345566788899999999999999999999999999999999999999999987 58999999988765
Q ss_pred cCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHH
Q 011516 411 HQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSM 461 (484)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~ 461 (484)
||..|.+.+..+++..++..
T Consensus 153 -------------------------------~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 153 -------------------------------WRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHCCCC
T ss_pred -------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 89999988888776655333
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-09 Score=111.98 Aligned_cols=179 Identities=9% Similarity=0.043 Sum_probs=123.9
Q ss_pred HHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHhc-CCC---h--hHHHHHHHHHhhhhcccccccchhhhhhccCC
Q 011516 244 LTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQSL-GYD---N--THIFVSMISIWNFLGRVGGGYFSEIIVRDYAY 317 (484)
Q Consensus 244 ~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~sl-g~~---~--~~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~ 317 (484)
.++.++++++|.+++..++....-..+...++.+.++. +.. . .....++..+++.+|++..|+++||+++|+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~-- 290 (417)
T 2cfq_A 213 ALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN-- 290 (417)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH--
T ss_pred HHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHH--
Confidence 45678999999887664443322222223344454442 211 1 123566777888999999999999998853
Q ss_pred chhHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHH-hhhhhHHHHHHH
Q 011516 318 PRPVAMAVAQFVMAIGHIFLGM-GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFL-TLANPAGSLVFS 395 (484)
Q Consensus 318 ~r~~~l~~~~~l~~~~~lll~~-~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~-~~a~~vg~~l~~ 395 (484)
.+.+...+++++.+++.. .+...+.+..++.+++++.........++|.++.+..|+.+|+. ..+..+|.. ++
T Consensus 291 ----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~-~g 365 (417)
T 2cfq_A 291 ----ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI-FM 365 (417)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHH-HH
T ss_pred ----HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHH-Hh
Confidence 123344444555544443 34445556666778887776666778999999999999999995 777778887 48
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMIL 463 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l 463 (484)
|.+.|.++|..+ |+..|.+++++++++.++.+.+
T Consensus 366 p~l~G~l~~~~g----------------------------------~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 366 SVLAGNMYESIG----------------------------------FQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp THHHHTHHHHSH----------------------------------HHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHHHHhcC----------------------------------cHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999765 8889999999988888776543
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.8e-09 Score=109.13 Aligned_cols=145 Identities=15% Similarity=0.109 Sum_probs=110.5
Q ss_pred HHHHHHHHHHhhccccccccchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHH
Q 011516 253 FWLIFFSLLLGSGSGLTVIDNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVM 330 (484)
Q Consensus 253 FWll~~~~~~~~g~g~~~i~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~ 330 (484)
++.++..+++.......+..-++.+.+++|.++.+ ...++..++..++.+.+|+++||++||+ .+.+...+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~------~l~~~~~~~ 101 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKA------GIITGLFLY 101 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchH------HHHHHHHHH
Confidence 33444444333222223333456677888988654 5889999999999999999999999864 234455555
Q ss_pred HHHHHHH---h-ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 331 AIGHIFL---G-MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 331 ~~~~lll---~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
+++.++. . ..+...+++..++.|++.|..++...++++|++..|+.++..|+...+..+|.. +++.+++.+.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~-~g~~~~~~l~~ 178 (438)
T 3o7q_A 102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI-IAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH-HHHHHTTHHHH
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 5665554 3 345667888899999999999999999999999999999999999999999998 58899999883
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-09 Score=112.19 Aligned_cols=172 Identities=17% Similarity=0.187 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHhhccccccccchhhHH-HhcC------CChh--HHHHHHHHHhhhhcccccccchhhh-hhccCCch
Q 011516 250 KADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLG------YDNT--HIFVSMISIWNFLGRVGGGYFSEII-VRDYAYPR 319 (484)
Q Consensus 250 ~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg------~~~~--~~~VSl~si~n~~GRl~~G~lsD~~-~~~~~~~r 319 (484)
++.+|++++..++......++...++.+. +++| .++. ....+++.+...++.+.+|+++||+ +||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~---- 86 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYN---- 86 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHH----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH----
Confidence 45678888877777666555666666655 4577 6654 4588999999999999999999999 8854
Q ss_pred hHHHHHHHHHHHHHHHHHhc-c-chhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhh---hhhHHhhhhhHHHHHH
Q 011516 320 PVAMAVAQFVMAIGHIFLGM-G-WPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGA---LYNFLTLANPAGSLVF 394 (484)
Q Consensus 320 ~~~l~~~~~l~~~~~lll~~-~-~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~---~yG~~~~a~~vg~~l~ 394 (484)
.+.+..++.+++.+++.. . +...+++..++.|++.|...+..+++++|.|..++.++ .+|+...+..+|.. +
T Consensus 87 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~-~ 163 (524)
T 2xut_A 87 --TILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSF-F 163 (524)
T ss_dssp --HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHH-H
T ss_pred --HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHH-H
Confidence 234445555555555443 4 56678888999999999999999999999999888854 56668888888887 5
Q ss_pred HHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHH
Q 011516 395 SGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMI 462 (484)
Q Consensus 395 ~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~ 462 (484)
+|.+.|.+.|..+ |+..|.+.+.+++++.++.++
T Consensus 164 g~~~~~~l~~~~g----------------------------------~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 164 ASLSMPLLLKNFG----------------------------------AAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSTHHHHTSC----------------------------------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcccc----------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999987654 899999998887776665543
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1e-06 Score=91.64 Aligned_cols=188 Identities=14% Similarity=0.118 Sum_probs=113.4
Q ss_pred hhcHHHHHHHHHHHHhhccccccc-cchhhHHHhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHH
Q 011516 248 LIKADFWLIFFSLLLGSGSGLTVI-DNLGQMSQSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMA 324 (484)
Q Consensus 248 l~~~~FWll~~~~~~~~g~g~~~i-~n~~~i~~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~ 324 (484)
.+.+..++......+....+...+ ...+.+.+..+.+... ....+.++.+.++.++++++.||++||+. +.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~------~~ 346 (491)
T 4gc0_A 273 FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL------QI 346 (491)
T ss_dssp SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH------HH
T ss_pred hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch------hc
Confidence 334444444444444444444333 3344555666766532 35567788899999999999999998642 12
Q ss_pred HHHHHHHHHHHHHh----ccchh-HHHHHHHHHHHHhccccc-chhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHH
Q 011516 325 VAQFVMAIGHIFLG----MGWPG-AMYVGTLLIGLGYGAHWA-IVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLI 398 (484)
Q Consensus 325 ~~~~l~~~~~lll~----~~~~~-~l~~~~~l~G~~~G~~~~-l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l 398 (484)
.....++++.+.+. ...+. ...+...+...+++..++ +...+++|+|..+..++..|+.....-+++++ .+.+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i-~~~~ 425 (491)
T 4gc0_A 347 IGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYF-VSWT 425 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHH-HHTH
T ss_pred cchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 22222333322221 12222 222333333444444443 44578999999999999999998888888875 5677
Q ss_pred HHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 011516 399 ASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNV 470 (484)
Q Consensus 399 ~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~ 470 (484)
+..+.+....... -.+..+|.+.+++|+++.+....+...||.+
T Consensus 426 ~p~l~~~~~~~~~----------------------------~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 426 FPMMDKNSWLVAH----------------------------FHNGFSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHCHHHHHHHH----------------------------HTTCHHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHhh----------------------------hhhhHHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 7777665432110 0145678999999999998887777667654
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.3e-07 Score=96.44 Aligned_cols=122 Identities=16% Similarity=0.099 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhc----------cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHH
Q 011516 323 MAVAQFVMAIGHIFLGM----------GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSL 392 (484)
Q Consensus 323 l~~~~~l~~~~~lll~~----------~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~ 392 (484)
+.+...+.+++.+++.. .+...+.+..++.|+++|...+.....+.|.++.++.|+..|+..+...+|..
T Consensus 376 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ 455 (524)
T 2xut_A 376 MGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNL 455 (524)
T ss_dssp HHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHH
Confidence 34455555555555433 13345667888999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 011516 393 VFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTT 468 (484)
Q Consensus 393 l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r 468 (484)
+++.+.|.++|..+.... ++ .=.|. .+..|.+.+++++++.++.+++..++|
T Consensus 456 -~g~~~~g~~~~~~~~~~~------------------~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (524)
T 2xut_A 456 -WVLLANVSVKSPTVTEQI------------------VQ---TGMSV--TAFQMFFFAGFAILAAIVFALYARSYQ 507 (524)
T ss_dssp -HHHHHHHHTTSCHHHHHH------------------HH---HHSCH--HHHHHHHHHHHHHHHHHHHC-------
T ss_pred -HHHHHHHHhccccccccc------------------cc---ccccc--cccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999986431100 00 00000 133488888888888777666554444
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-06 Score=90.81 Aligned_cols=110 Identities=22% Similarity=0.258 Sum_probs=86.5
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-------------------ccchhHHHHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-------------------MGWPGAMYVG 348 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-------------------~~~~~~l~~~ 348 (484)
..+|.+.++..+|-+++|+++||+|||+ .+.+..+++.++.++.+ ..+...++++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~------~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~ 132 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRD------SLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIY 132 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHH------HHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHH------HHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHH
Confidence 4778888999999999999999999974 23445555555554433 3445678899
Q ss_pred HHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHHh
Q 011516 349 TLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIYD 404 (484)
Q Consensus 349 ~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iyD 404 (484)
-++.|++.|+..++.|..++|+...++.+...++...+..+|..+ +..+...+.+
T Consensus 133 R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~-~~~~~~~~~~ 187 (491)
T 4gc0_A 133 RIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLL-VYCVNYFIAR 187 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhh-hhhcchhhcc
Confidence 999999999999999999999999999999999999998888764 5444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-08 Score=99.03 Aligned_cols=151 Identities=12% Similarity=0.085 Sum_probs=91.5
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
.+|+++||.+...+++......++...++.+.++ +|.++. ...+++..+...++++.+|+++||++||+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l------ 76 (417)
T 2cfq_A 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL------ 76 (417)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH------
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH------
Confidence 5899999999888776655544555666666654 687754 4689999999999999999999999996522
Q ss_pred HHHHHHHHH---HHHHHhccc--hhHHHHHHHHHHHHhcccccchhHHHHhhhC--ccchhhhhhHHhhhhhHHHHHHHH
Q 011516 324 AVAQFVMAI---GHIFLGMGW--PGAMYVGTLLIGLGYGAHWAIVPAAASELFG--LKKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 324 ~~~~~l~~~---~~lll~~~~--~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG--~k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.+...+..+ ..+...... ...++...++.|+..|..++.....+.++.. .|+.+..+|.......+|.. ++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~-~~~ 155 (417)
T 2cfq_A 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHH-HHH
Confidence 111111111 111101100 0011222233333334333333333333332 25667788888777778876 578
Q ss_pred HHHHHHHh
Q 011516 397 LIASYIYD 404 (484)
Q Consensus 397 ~l~G~iyD 404 (484)
.+.|++.|
T Consensus 156 ~l~~~l~~ 163 (417)
T 2cfq_A 156 SIVGIMFT 163 (417)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.72 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.03 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 98.58 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.1e-17 Score=164.52 Aligned_cols=199 Identities=18% Similarity=0.140 Sum_probs=149.6
Q ss_pred CCHHHHhhcHHHHHHHHHHHHhhccccccccchhhHHHh-cCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCc
Q 011516 242 FTLTQALIKADFWLIFFSLLLGSGSGLTVIDNLGQMSQS-LGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYP 318 (484)
Q Consensus 242 ~t~~~~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~~s-lg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~ 318 (484)
...++.++++.+|.+....++.......+....+.+.++ .+.+.. ....++..+.+.+|+++.|+++||++++++..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 240 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 345678899999999998888877777776666666654 466643 45888999999999999999999998754221
Q ss_pred hhHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHH
Q 011516 319 RPVAMAVAQFVMAIGHIFLG---MGWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFS 395 (484)
Q Consensus 319 r~~~l~~~~~l~~~~~lll~---~~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~ 395 (484)
.......+..++.+++. ..+.....+..++.|++.++........+.|.++.+..|+..|+..+...+++.+.+
T Consensus 320 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~ 396 (447)
T d1pw4a_ 320 ---TGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396 (447)
T ss_dssp ---HHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222222333322 223445666778889999888889999999999999999999999877666555568
Q ss_pred HHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 011516 396 GLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILVHRTTNVYSHLY 475 (484)
Q Consensus 396 ~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~~r~r~~~~~~~ 475 (484)
|.+.|++.|..| |+..|.+++++++++.++..++..+++|..+++.
T Consensus 397 ~~~~g~~~~~~g----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 442 (447)
T d1pw4a_ 397 SAIVGYTVDFFG----------------------------------WDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLL 442 (447)
T ss_dssp HHHHHHHHHSSC----------------------------------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhC----------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 899999999876 8889999999999999988888777777666665
Q ss_pred hc
Q 011516 476 GK 477 (484)
Q Consensus 476 ~~ 477 (484)
++
T Consensus 443 ~e 444 (447)
T d1pw4a_ 443 QE 444 (447)
T ss_dssp GG
T ss_pred Hh
Confidence 54
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=4.6e-10 Score=108.88 Aligned_cols=143 Identities=10% Similarity=0.025 Sum_probs=115.0
Q ss_pred HHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHHHHHHHHHHHh-ccchhHHHHHHHHHHHHhcccccchhHH
Q 011516 288 IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQFVMAIGHIFLG-MGWPGAMYVGTLLIGLGYGAHWAIVPAA 366 (484)
Q Consensus 288 ~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~l~~~~~lll~-~~~~~~l~~~~~l~G~~~G~~~~l~p~i 366 (484)
...+...+...+++...|.+.||.++++ .+.+...+.+++.+++. ..+...+++..++.|+++|..++.....
T Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~r~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 336 (417)
T d1pv7a_ 263 YVTTMGELLNASIMFFAPLIINRIGGKN------ALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHCHHH------HHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhhccccccc------chhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888999999999999987743 23444555555555554 3556677888899999999999999999
Q ss_pred HHhhhCccchhhhhhHH-hhhhhHHHHHHHHHHHHHHHhhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHH
Q 011516 367 ASELFGLKKFGALYNFL-TLANPAGSLVFSGLIASYIYDHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLT 445 (484)
Q Consensus 367 ~se~FG~k~~g~~yG~~-~~a~~vg~~l~~~~l~G~iyD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~ 445 (484)
+.|.++.++.|+.+|+. .++..+|.. ++|.++|+++|..| |+.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~g~~-i~~~~~G~l~~~~g----------------------------------~~~~ 381 (417)
T d1pv7a_ 337 ITSQFEVRFSATIYLVCFCFFKQLAMI-FMSVLAGNMYESIG----------------------------------FQGA 381 (417)
T ss_dssp HHHHSCGGGHHHHHHHHHTTTHHHHHH-HHHHHHHHHHHHHC----------------------------------HHHH
T ss_pred HHHHCCHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC----------------------------------HHHH
Confidence 99999999999999986 456678887 47899999999987 8899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q 011516 446 SMIMSGLCIVAVILSMILVHRTTNVY 471 (484)
Q Consensus 446 f~i~~~~~~~~~~l~~~l~~r~r~~~ 471 (484)
|.+++++++++.++++++..+.|+..
T Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 382 YLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 99999999998888888776665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=5.2e-10 Score=111.50 Aligned_cols=171 Identities=15% Similarity=0.167 Sum_probs=124.0
Q ss_pred HHHHHHHHHhhccccc---cccchhhHHHhcCCChh--HHHHHHHHHhhhhcccccccchhhhhhccCCchhHHHHHHHH
Q 011516 254 WLIFFSLLLGSGSGLT---VIDNLGQMSQSLGYDNT--HIFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAMAVAQF 328 (484)
Q Consensus 254 Wll~~~~~~~~g~g~~---~i~n~~~i~~slg~~~~--~~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l~~~~~ 328 (484)
|.+++..+++.....+ .++.+.+..+++|.++. ....+++.++..+|.+.+|+++||++||+ .+.+..+
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~------~~~~~~~ 97 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRV------FLPAGLI 97 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchH------HHHHHHH
Confidence 5555544444333322 22334445567788765 45899999999999999999999999864 2334444
Q ss_pred HHHHHHHHHhc-----cchhHHHHHHHHHHHHhcccccchhHHHHhhhCccchhhhhhHHhhhhhHHHHHHHHHHHHHHH
Q 011516 329 VMAIGHIFLGM-----GWPGAMYVGTLLIGLGYGAHWAIVPAAASELFGLKKFGALYNFLTLANPAGSLVFSGLIASYIY 403 (484)
Q Consensus 329 l~~~~~lll~~-----~~~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~k~~g~~yG~~~~a~~vg~~l~~~~l~G~iy 403 (484)
+.+++.++.+. .+...+++..++.|++.|..+.....+++|+|..|+.++..|+...+..+|.. +++.+.+.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~-i~~~~~~~~~ 176 (447)
T d1pw4a_ 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG-IPPLLFLLGM 176 (447)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHT-SHHHHHHHHH
T ss_pred HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhh-hhhhhhhhHh
Confidence 44555444332 34557888889999999999999999999999999999999999999999987 4777888777
Q ss_pred hhhhhhccCccccccccCcccccCCCCCCCCccccCcccHHHHHHHHHHHHHHHHHHHHhh
Q 011516 404 DHEAEKQHQPHHHLLNAGSIFTSMPRVDEPLKCEGSICYFLTSMIMSGLCIVAVILSMILV 464 (484)
Q Consensus 404 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~G~~Cy~~~f~i~~~~~~~~~~l~~~l~ 464 (484)
+..+ -++..|.+.+.++++..++.+.+.
T Consensus 177 ~~~~---------------------------------~w~~~~~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 177 AWFN---------------------------------DWHAALYMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHTC---------------------------------CSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred hhhh---------------------------------cccccchhhhhhHHHHHHHHHHhc
Confidence 6654 167778888777776666555543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1.4e-07 Score=90.91 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=91.4
Q ss_pred HhhcHHHHHHHHHHHHhhccccccccchhhHH-HhcCCChhH--HHHHHHHHhhhhcccccccchhhhhhccCCchhHHH
Q 011516 247 ALIKADFWLIFFSLLLGSGSGLTVIDNLGQMS-QSLGYDNTH--IFVSMISIWNFLGRVGGGYFSEIIVRDYAYPRPVAM 323 (484)
Q Consensus 247 ~l~~~~FWll~~~~~~~~g~g~~~i~n~~~i~-~slg~~~~~--~~VSl~si~n~~GRl~~G~lsD~~~~~~~~~r~~~l 323 (484)
-+||++||.+.+.+++.....-++..-++.+. +++|.++.+ ...++..+...++.+.+|+++||++||+. +
T Consensus 3 ~lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~------l 76 (417)
T d1pv7a_ 3 YLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKY------L 76 (417)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTH------H
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH------H
Confidence 58999999999988877655545555566555 457888764 58899999999999999999999999642 2
Q ss_pred HHHHHHHHHHHHHHhc-cc----hhHHHHHHHHHHHHhcccccchhHHHHhhhCc--cchhhhhhHHhhhhhHHHHHHHH
Q 011516 324 AVAQFVMAIGHIFLGM-GW----PGAMYVGTLLIGLGYGAHWAIVPAAASELFGL--KKFGALYNFLTLANPAGSLVFSG 396 (484)
Q Consensus 324 ~~~~~l~~~~~lll~~-~~----~~~l~~~~~l~G~~~G~~~~l~p~i~se~FG~--k~~g~~yG~~~~a~~vg~~l~~~ 396 (484)
.+......++..++.. .. .....+...+.+.+.+...........+.... ++....++........+.. +++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 155 (417)
T d1pv7a_ 77 LWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWA-LGA 155 (417)
T ss_dssp HHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccc-ccc
Confidence 2222223333322221 11 11223333334444444443333333222221 2333455555556656655 577
Q ss_pred HHHHHHHhhhh
Q 011516 397 LIASYIYDHEA 407 (484)
Q Consensus 397 ~l~G~iyD~~~ 407 (484)
.+.|.+++...
T Consensus 156 ~~~~~l~~~~~ 166 (417)
T d1pv7a_ 156 SIVGIMFTINN 166 (417)
T ss_dssp HHHHHHHHHCH
T ss_pred ccccccccccc
Confidence 88888887654
|